Query 024693
Match_columns 264
No_of_seqs 26 out of 28
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 12:47:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024693.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024693hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fftc_ f.25.1.1 (C:) Cytochro 17.3 30 0.0022 26.1 2.2 56 47-103 116-178 (185)
2 d1v54c_ f.25.1.1 (C:) Mitochon 11.8 2.3E+02 0.017 22.4 6.4 57 46-103 189-252 (259)
3 d1m56c_ f.25.1.1 (C:) Bacteria 9.1 3.4E+02 0.025 21.2 6.5 58 45-103 194-258 (265)
4 d1x2la1 a.35.1.7 (A:9-95) Home 8.5 98 0.0071 22.0 2.5 18 19-36 66-83 (87)
5 d2ad6b1 a.137.2.1 (B:1-69) Met 7.9 60 0.0044 22.6 1.0 13 193-205 20-32 (69)
6 d3bona1 d.92.1.7 (A:3-419) Bot 7.3 96 0.007 27.7 2.3 13 196-208 66-78 (417)
7 d1w6sb_ a.137.2.1 (B:) Methano 7.2 67 0.0049 22.6 1.0 13 193-205 20-32 (73)
8 d1m0ga_ g.46.1.1 (A:) Metallot 7.2 63 0.0046 19.2 0.7 6 3-8 1-6 (30)
9 d1lrwb_ a.137.2.1 (B:) Methano 5.7 90 0.0066 22.3 1.0 13 193-205 20-32 (83)
10 d1f1oa_ a.127.1.1 (A:) Adenylo 5.6 3.9E+02 0.028 21.9 5.3 37 15-52 140-180 (408)
No 1
>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]}
Probab=17.34 E-value=30 Score=26.09 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=33.1
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHH----hcC---CchhhHHHHHHHHHHHHHHHHHHHHhh
Q 024693 47 LIGSLGALYNGVLLINLAIALFALVAI----ESS---SQSLGRTYAVLLFCSILLDISWFILFT 103 (264)
Q Consensus 47 liGSLga~Y~GVl~~nlAiaLFALVAI----Esg---Sq~LgRtYAvLL~~~llLDI~Wf~lfa 103 (264)
..||.=++.||.|..-+.++++.+..+ ..+ +.+-.+..++ -.+==.+|++|+.+|.
T Consensus 116 ~~~s~fy~lTGlH~lHV~~Gli~L~~~~~r~~~~~~~~~~~~~v~~~-~~YWHFvd~vWi~lf~ 178 (185)
T d1fftc_ 116 GFLSAFFALVGTHGLHVTSGLIWMAVLMVQIARRGLTSTNRTRIMCL-SLFWHFLDVVWICVFT 178 (185)
T ss_dssp STTTHHHHHHHHHTTHHHHTTHHHHHHHHHHHHTCCCTTCCCHHHHH-HHHHHHHHHHHHHHCC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccchhHHHHH-HHHHHHHHHHHHHHHH
Confidence 455666777999988888777766532 111 1111122222 2233468999999985
No 2
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=11.84 E-value=2.3e+02 Score=22.41 Aligned_cols=57 Identities=18% Similarity=0.178 Sum_probs=34.5
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHhc-------CCchhhHHHHHHHHHHHHHHHHHHHHhh
Q 024693 46 ALIGSLGALYNGVLLINLAIALFALVAIES-------SSQSLGRTYAVLLFCSILLDISWFILFT 103 (264)
Q Consensus 46 AliGSLga~Y~GVl~~nlAiaLFALVAIEs-------gSq~LgRtYAvLL~~~llLDI~Wf~lfa 103 (264)
...||.=++-||.|..-+.+++..+.-+=. ++++-.+.-+ .-++==.+|++|+.+|.
T Consensus 189 ~~~gS~ff~lTG~Hg~HVi~G~i~l~~~~~r~~~~~~~~~~~~~~e~-~~~YWHFVDvVWi~lf~ 252 (259)
T d1v54c_ 189 GVYGSTFFVATGFHGLHVIIGSTFLIVCFFRQLKFHFTSNHHFGFEA-AAWYWHFVDVVWLFLYV 252 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCCHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchhHHH-HHHHHhHHHHHHHHHHH
Confidence 677888888899988887777655543321 2222222111 12222358999999985
No 3
>d1m56c_ f.25.1.1 (C:) Bacterial aa3 type cytochrome c oxidase subunit III {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=9.13 E-value=3.4e+02 Score=21.17 Aligned_cols=58 Identities=12% Similarity=0.214 Sum_probs=35.3
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHhc-------CCchhhHHHHHHHHHHHHHHHHHHHHhh
Q 024693 45 CALIGSLGALYNGVLLINLAIALFALVAIES-------SSQSLGRTYAVLLFCSILLDISWFILFT 103 (264)
Q Consensus 45 cAliGSLga~Y~GVl~~nlAiaLFALVAIEs-------gSq~LgRtYAvLL~~~llLDI~Wf~lfa 103 (264)
-...||.=+.-||.|..-+.+++..+.-+=. ++.+..+. -...++==.+|++|+.+|.
T Consensus 194 ~~~~gs~ff~lTG~Hg~HV~~G~i~l~~~~~~~~~~~~~~~~~~~~-e~~~~YWHFVDvVWi~lf~ 258 (265)
T d1m56c_ 194 GNIYGANFFMATGFHGFHVIVGTIFLLVCLIRVQRGHFTPEKHVGF-EAAIWYWHFVDVVWLFLFA 258 (265)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSSCCHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhHHH-HHHHHHHHHHHHHHHHHHH
Confidence 3457888888899998888777665443221 12222222 2222334468999999986
No 4
>d1x2la1 a.35.1.7 (A:9-95) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.48 E-value=98 Score=21.97 Aligned_cols=18 Identities=11% Similarity=0.198 Sum_probs=14.4
Q ss_pred HHHHHHhhchHHHHHHHH
Q 024693 19 DEIQTLLRDYDRLQYIAV 36 (264)
Q Consensus 19 ~ri~~wl~dyd~lQ~lA~ 36 (264)
-|+++||.|++++..|..
T Consensus 66 ~RM~~WL~~p~~v~~L~~ 83 (87)
T d1x2la1 66 IKMKQFLSDEQNVLALRT 83 (87)
T ss_dssp HHHHHHHTCTHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHH
Confidence 368999999998887754
No 5
>d2ad6b1 a.137.2.1 (B:1-69) Methanol dehydrogenase, light chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}
Probab=7.90 E-value=60 Score=22.65 Aligned_cols=13 Identities=38% Similarity=0.754 Sum_probs=10.7
Q ss_pred CCcccccccCccc
Q 024693 193 DDAVGGSIYDPAY 205 (264)
Q Consensus 193 ~~ilgGSIYdpay 205 (264)
.|.+.||-|||-.
T Consensus 20 P~kiaGsKYDPkh 32 (69)
T d2ad6b1 20 PEKIAGSKYDPKH 32 (69)
T ss_dssp CSCCTTSTTCCCC
T ss_pred chhhcCCcCCCCC
Confidence 4788999999963
No 6
>d3bona1 d.92.1.7 (A:3-419) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]}
Probab=7.25 E-value=96 Score=27.73 Aligned_cols=13 Identities=46% Similarity=0.692 Sum_probs=10.5
Q ss_pred ccccccCcccchh
Q 024693 196 VGGSIYDPAYFSS 208 (264)
Q Consensus 196 lgGSIYdpayysS 208 (264)
.-|++|||.|-|.
T Consensus 66 ~~~~yYDpnyLsT 78 (417)
T d3bona1 66 VPVSYYDSTYLST 78 (417)
T ss_dssp CSSCCCCTTTTCS
T ss_pred CCcceeCcccccc
Confidence 4478999999874
No 7
>d1w6sb_ a.137.2.1 (B:) Methanol dehydrogenase, light chain {Methylobacterium extorquens [TaxId: 408]}
Probab=7.22 E-value=67 Score=22.58 Aligned_cols=13 Identities=38% Similarity=0.754 Sum_probs=10.7
Q ss_pred CCcccccccCccc
Q 024693 193 DDAVGGSIYDPAY 205 (264)
Q Consensus 193 ~~ilgGSIYdpay 205 (264)
.+.+.||-|||-.
T Consensus 20 P~kiaGsKYDPkh 32 (73)
T d1w6sb_ 20 PEKIAGSKYDPKH 32 (73)
T ss_dssp CSCCTTSTTCCCC
T ss_pred chhhcCCcCCCCC
Confidence 4788999999963
No 8
>d1m0ga_ g.46.1.1 (A:) Metallothionein {Black rockcod (Notothenia coriiceps) [TaxId: 8208]}
Probab=7.20 E-value=63 Score=19.21 Aligned_cols=6 Identities=67% Similarity=2.261 Sum_probs=3.1
Q ss_pred cccccC
Q 024693 3 RCCWCC 8 (264)
Q Consensus 3 ~cc~~~ 8 (264)
+||=||
T Consensus 1 scc~cc 6 (30)
T d1m0ga_ 1 SCCPCC 6 (30)
T ss_dssp CCCTTS
T ss_pred CCCCcc
Confidence 356555
No 9
>d1lrwb_ a.137.2.1 (B:) Methanol dehydrogenase, light chain {Paracoccus denitrificans [TaxId: 266]}
Probab=5.73 E-value=90 Score=22.32 Aligned_cols=13 Identities=46% Similarity=0.657 Sum_probs=10.7
Q ss_pred CCcccccccCccc
Q 024693 193 DDAVGGSIYDPAY 205 (264)
Q Consensus 193 ~~ilgGSIYdpay 205 (264)
.+.+.||-|||-.
T Consensus 20 P~kiaGsKYDPkH 32 (83)
T d1lrwb_ 20 PAKVEGSKYDPQH 32 (83)
T ss_dssp CSCCTTSTTCCCC
T ss_pred chhhcCCcCCCCC
Confidence 4788999999963
No 10
>d1f1oa_ a.127.1.1 (A:) Adenylosuccinate lyase {Bacillus subtilis [TaxId: 1423]}
Probab=5.63 E-value=3.9e+02 Score=21.94 Aligned_cols=37 Identities=14% Similarity=0.176 Sum_probs=27.0
Q ss_pred ccchHHHHHHh----hchHHHHHHHHHHHHHHHHHHHHhhhh
Q 024693 15 HRLKDEIQTLL----RDYDRLQYIAVILIYIQIGCALIGSLG 52 (264)
Q Consensus 15 ~~~~~ri~~wl----~dyd~lQ~lA~~LiY~QI~cAliGSLg 52 (264)
..++.++..|. ||.++++..-.-+.+.|.+-| +|+.+
T Consensus 140 ~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~~lGGA-~Gt~~ 180 (408)
T d1f1oa_ 140 TTFGLKLALWHEEMKRNLERFKQAKAGIEVGKISGA-VGTYA 180 (408)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchh-hhccc
Confidence 56777777774 999999998888888888643 45443
Done!