BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024694
         (264 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ZRH|A Chain A, Crystal Structure Of The Lys29, Lys33-Linkage-Specific
           Trabid Otu Deubiquitinase Domain Reveals An
           Ankyrin-Repeat Ubiquitin Binding Domain (Ankubd)
          Length = 454

 Score = 31.2 bits (69), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 147 NASKQISAAISPDQNTQAFKEVAIIRHPRIGEYAFGFITSSVV 189
            A+K I A + P+   Q  +E+A   H R G++A  F+T  V 
Sbjct: 95  QAAKCIPAMVCPELTEQIRREIAASLHQRKGDFACYFLTDLVT 137


>pdb|4GPT|C Chain C, Crystal Structure Of Kpt251 In Complex With
           Crm1-ran-ranbp1
 pdb|4GMX|C Chain C, Crystal Structure Of Kpt185 In Complex With
           Crm1-Ran-Ranbp1
          Length = 1060

 Score = 28.9 bits (63), Expect = 2.9,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 12/100 (12%)

Query: 130 SLGEWFIKRMPFVRHIYNA-SKQISAAISPDQNTQAFKEVAIIRHPRIGEYAFGFITSSV 188
           +L   ++KR P  +HIY     Q+   I   +N    +EV ++ +   GE    F+  S 
Sbjct: 406 ALNPEYMKRFPLKKHIYEEICSQLRLVII--ENMVRPEEVLVVENDE-GEIVREFVKESD 462

Query: 189 VLQNYSGEEELCCVYVPTNHLYIGDIFLINTKDVIRPNLS 228
            +Q Y  E E+         +Y+  + +I+T++++   L+
Sbjct: 463 TIQLYKSEREVL--------VYLTHLNVIDTEEIMISKLA 494


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.141    0.435 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,210,001
Number of Sequences: 62578
Number of extensions: 267637
Number of successful extensions: 589
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 588
Number of HSP's gapped (non-prelim): 2
length of query: 264
length of database: 14,973,337
effective HSP length: 97
effective length of query: 167
effective length of database: 8,903,271
effective search space: 1486846257
effective search space used: 1486846257
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)