BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024694
         (264 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q99JA4|CLTR1_MOUSE Cysteinyl leukotriene receptor 1 OS=Mus musculus GN=Cysltr1 PE=2
           SV=1
          Length = 352

 Score = 34.7 bits (78), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 15/131 (11%)

Query: 66  CVILFPIAVTFYI---TWWFIHFVDGFFS-PIYAQLGIDIF---GLGFITSVTFIFLI-G 117
           CV   P+ V +Y+    W F  F+    +  +Y  L   IF    + F   V  +F +  
Sbjct: 87  CVCTLPLRVVYYVHKGKWLFGDFLCRLTTYALYVNLYCSIFFMTAMSFFRCVAIVFPVQN 146

Query: 118 VFMSSWLGASVLSLGEWF---IKRMPFVRHI-YNASKQISAAISPDQNTQAFKEVAIIRH 173
           + + +   A  + +G W    +   PF+ +  Y   K  +    P QN QA K V I+ +
Sbjct: 147 INLVTQKKARFVCIGIWIFVILTSSPFLMYKSYQDEKNNTKCFEPPQNNQAKKYVLILHY 206

Query: 174 PRIGEYAFGFI 184
             +    FGFI
Sbjct: 207 VSL---FFGFI 214


>sp|B9EB51|MURD_MACCJ UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Macrococcus
           caseolyticus (strain JCSC5402) GN=murD PE=3 SV=1
          Length = 445

 Score = 31.6 bits (70), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 13/77 (16%)

Query: 189 VLQNY---------SGEEELCCVYVPTNHLYIGDIFLINTKDVIRPNLSVREGIEIVVS- 238
           +LQNY         S +E++   Y+  N +Y  D F+I+ KD++ P +   E +   ++ 
Sbjct: 228 LLQNYNIKSKVVYFSTDEKVEGAYIDQNKVYFYDEFIIDVKDIVLPGVHNLENVLASIAA 287

Query: 239 ---GGMSMPQILSTLET 252
               G+    I  TL+T
Sbjct: 288 AKLAGIDNIHICDTLKT 304


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.138    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,283,369
Number of Sequences: 539616
Number of extensions: 3684678
Number of successful extensions: 15935
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 15929
Number of HSP's gapped (non-prelim): 10
length of query: 264
length of database: 191,569,459
effective HSP length: 115
effective length of query: 149
effective length of database: 129,513,619
effective search space: 19297529231
effective search space used: 19297529231
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 60 (27.7 bits)