Query 024694
Match_columns 264
No_of_seqs 139 out of 625
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 12:47:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024694.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024694hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p0t_A Uncharacterized protein 73.6 3.4 0.00012 32.5 4.2 41 196-236 24-65 (138)
2 3ksv_A Uncharacterized protein 71.7 3.8 0.00013 33.1 4.1 41 196-236 30-71 (149)
3 3o0m_A HIT family protein; ssg 69.4 6.1 0.00021 31.6 4.8 41 196-236 24-65 (149)
4 1fit_A FragIle histidine prote 68.0 5.2 0.00018 31.8 4.1 41 196-236 18-59 (147)
5 3lb5_A HIT-like protein involv 67.9 6.4 0.00022 32.2 4.8 41 196-236 47-88 (161)
6 3imi_A HIT family protein; str 67.8 5.7 0.00019 31.7 4.3 41 196-236 28-69 (147)
7 2eo4_A 150AA long hypothetical 66.5 5.8 0.0002 31.5 4.1 41 196-236 18-59 (149)
8 3l7x_A SMU.412C, putative HIT- 65.5 6.2 0.00021 32.8 4.2 41 196-236 55-96 (173)
9 2oik_A Histidine triad (HIT) p 64.0 7.3 0.00025 31.2 4.3 40 196-235 25-65 (154)
10 1y23_A HIT, histidine triad pr 62.8 5 0.00017 31.6 3.1 40 196-235 24-64 (145)
11 3r6f_A HIT family protein; str 59.6 3.3 0.00011 32.6 1.4 37 196-232 23-60 (135)
12 3n1s_A HIT-like protein HINT; 59.2 9.2 0.00032 29.4 3.9 36 196-231 22-58 (119)
13 3oj7_A Putative histidine tria 58.1 6.8 0.00023 29.8 3.0 36 196-231 26-62 (117)
14 4egu_A Histidine triad (HIT) p 57.9 5.6 0.00019 30.3 2.5 36 196-231 23-59 (119)
15 3o1c_A Histidine triad nucleot 48.1 14 0.00047 28.6 3.3 36 196-231 34-70 (126)
16 1xqu_A HIT family hydrolase; p 46.1 9.9 0.00034 30.6 2.2 36 196-231 54-90 (147)
17 3ano_A AP-4-A phosphorylase; d 44.3 23 0.00079 30.5 4.4 40 196-235 89-129 (218)
18 2gww_B IPAA; protein complex, 35.4 16 0.00056 21.7 1.4 15 143-157 9-23 (30)
19 1ems_A Nitfhit, NIT-fragIle hi 34.4 33 0.0011 31.7 4.1 41 196-236 314-355 (440)
20 2rdd_B UPF0092 membrane protei 32.6 26 0.00089 21.9 2.1 18 65-82 2-19 (37)
21 1gup_A Galactose-1-phosphate u 32.0 39 0.0013 30.8 4.1 39 196-234 215-254 (348)
22 1q90_G Cytochrome B6F complex 31.1 54 0.0019 20.9 3.4 21 104-124 7-27 (37)
23 3i24_A HIT family hydrolase; s 28.3 60 0.002 26.1 4.2 39 197-235 19-58 (149)
24 3ohe_A Histidine triad (HIT) p 28.3 66 0.0023 25.3 4.4 40 197-236 19-59 (137)
25 1pp9_G Ubiquinol-cytochrome C 25.6 1.9E+02 0.0065 21.1 6.2 46 40-85 20-65 (81)
26 3i4s_A Histidine triad protein 24.7 79 0.0027 25.4 4.3 38 198-236 25-64 (149)
27 1vf5_G Protein PET G; photosyn 20.2 56 0.0019 20.8 1.9 21 104-124 7-27 (37)
28 3d31_C Sulfate/molybdate ABC t 20.0 2.5E+02 0.0085 24.0 6.9 37 107-143 96-134 (295)
No 1
>3p0t_A Uncharacterized protein; ssgcid, HIT-like protein, mycobacerium paratuberculosis, STR genomics; 1.90A {Mycobacterium avium subsp}
Probab=73.63 E-value=3.4 Score=32.48 Aligned_cols=41 Identities=5% Similarity=0.173 Sum_probs=34.4
Q ss_pred CCceEEEEecCCCCCCeeEEEEeCCCeecC-CCCHHHHHHHH
Q 024694 196 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEIV 236 (264)
Q Consensus 196 ~e~~v~VfvPtsp~tsG~l~lV~~~~V~~l-DmsveeAmk~i 236 (264)
+++.+.+|++-.|.+-|.++++|++-+..+ |++.+|...+.
T Consensus 24 e~~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~ 65 (138)
T 3p0t_A 24 EDDDVVAFLTIEPMTQGHTLVVPREEIDNWQDVDSAAFNRVM 65 (138)
T ss_dssp ECSSEEEEECSSCSSTTCEEEEESSCCCCGGGSCHHHHHHHH
T ss_pred eCCCEEEEecCCCCCCcEEEEEEhHHhCchhhCCHHHHHHHH
Confidence 467888999999988999999999998765 89988876554
No 2
>3ksv_A Uncharacterized protein; HIT family, structural genomics, structural genomics of PATH protozoa consortium, SGPP, unknown function; 1.90A {Leishmania major} SCOP: d.13.1.0
Probab=71.75 E-value=3.8 Score=33.08 Aligned_cols=41 Identities=15% Similarity=0.267 Sum_probs=34.7
Q ss_pred CCceEEEEecCCCCCCeeEEEEeCCCeecC-CCCHHHHHHHH
Q 024694 196 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEIV 236 (264)
Q Consensus 196 ~e~~v~VfvPtsp~tsG~l~lV~~~~V~~l-DmsveeAmk~i 236 (264)
+++.+.+|+|-.|..-|-++++|++.+..+ |++-||...+.
T Consensus 30 ed~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~ 71 (149)
T 3ksv_A 30 ETSKALAFMDINPLSRGHMLVIPKEHASCLHELGMEDAADVG 71 (149)
T ss_dssp ECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHH
T ss_pred ECCCEEEEECCCCCCCCEEEEEeChhhhhhhhCCHHHHHHHH
Confidence 467889999999988999999999998765 99988866554
No 3
>3o0m_A HIT family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, hydrola structural genomics; HET: AMP; 1.90A {Mycobacterium smegmatis str}
Probab=69.43 E-value=6.1 Score=31.60 Aligned_cols=41 Identities=10% Similarity=0.083 Sum_probs=34.2
Q ss_pred CCceEEEEecCCCCCCeeEEEEeCCCeecC-CCCHHHHHHHH
Q 024694 196 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEIV 236 (264)
Q Consensus 196 ~e~~v~VfvPtsp~tsG~l~lV~~~~V~~l-DmsveeAmk~i 236 (264)
+++.+.+|+|-.|.+-|-++++|++.+..+ |++-+|...+.
T Consensus 24 e~~~~~af~d~~p~~pgh~lViPk~H~~~l~dl~~~~~~~l~ 65 (149)
T 3o0m_A 24 EDENFLGILDIRPFTRGHTLVIPKTHTVDLTDTPPETVAGMA 65 (149)
T ss_dssp ECSSEEEEECSSCSSTTCEEEEESSCCCSTTTSCHHHHHHHH
T ss_pred ECCCEEEEEcCCCCCCCeEEEEechhhCCHhHCCHHHHHHHH
Confidence 467889999999988899999999998765 89988876543
No 4
>1fit_A FragIle histidine protein; FHIT, fragIle histidine triad protein, putative human tumor suppressor, advanced photon source, APS; HET: FRU; 1.85A {Homo sapiens} SCOP: d.13.1.1 PDB: 1fhi_A* 2fit_A* 3fit_A* 4fit_A 5fit_A* 6fit_A* 2fhi_A*
Probab=68.00 E-value=5.2 Score=31.75 Aligned_cols=41 Identities=20% Similarity=0.257 Sum_probs=34.6
Q ss_pred CCceEEEEecCCCCCCeeEEEEeCCCeecC-CCCHHHHHHHH
Q 024694 196 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEIV 236 (264)
Q Consensus 196 ~e~~v~VfvPtsp~tsG~l~lV~~~~V~~l-DmsveeAmk~i 236 (264)
+++.+.+|+|-.|..-|.++++|++.+..+ |++.+|...+.
T Consensus 18 e~~~~~a~~d~~p~~pgh~LViPk~h~~~~~dL~~~e~~~l~ 59 (147)
T 1fit_A 18 KTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLF 59 (147)
T ss_dssp ECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHH
T ss_pred ECCCEEEEECCCCCCCcEEEEEEccccCChhhCCHHHHHHHH
Confidence 467899999999988899999999988775 89988866544
No 5
>3lb5_A HIT-like protein involved in cell-cycle regulatio; niaid, seattle structural genomics center for infectious DIS ssgcid, histidine triad; 1.90A {Bartonella henselae}
Probab=67.91 E-value=6.4 Score=32.17 Aligned_cols=41 Identities=10% Similarity=0.125 Sum_probs=34.2
Q ss_pred CCceEEEEecCCCCCCeeEEEEeCCCeecC-CCCHHHHHHHH
Q 024694 196 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEIV 236 (264)
Q Consensus 196 ~e~~v~VfvPtsp~tsG~l~lV~~~~V~~l-DmsveeAmk~i 236 (264)
+++.+.+|+|-.|.+-|-++++|++-+..+ |++-||...+.
T Consensus 47 e~e~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~ee~~~l~ 88 (161)
T 3lb5_A 47 EDDDVIAFMDIMPQAPGHTLVIPKKGSRNLLDADTETLFPVI 88 (161)
T ss_dssp ECSSEEEEECSSCSSTTCEEEEESSCCSSTTTSCHHHHHHHH
T ss_pred ECCCEEEEECCCcCCCcEEEEEEeeccchhhhCCHHHHHHHH
Confidence 467789999999988899999999998765 89998866443
No 6
>3imi_A HIT family protein; structural genomics, infectious diseases for structural genomics of infectious diseases, unknown FUN csgid; 2.01A {Bacillus anthracis str} SCOP: d.13.1.1
Probab=67.82 E-value=5.7 Score=31.71 Aligned_cols=41 Identities=15% Similarity=0.181 Sum_probs=34.1
Q ss_pred CCceEEEEecCCCCCCeeEEEEeCCCeecC-CCCHHHHHHHH
Q 024694 196 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEIV 236 (264)
Q Consensus 196 ~e~~v~VfvPtsp~tsG~l~lV~~~~V~~l-DmsveeAmk~i 236 (264)
+++.+.+|+|-.|.+-|-++++|++.+..+ |++.||...+.
T Consensus 28 e~~~~~a~~d~~p~~pgh~lViPk~H~~~l~dL~~~e~~~l~ 69 (147)
T 3imi_A 28 EDEHVLAFLDISQVTKGHTLVIPKVHKQDIFALTPEIASHIF 69 (147)
T ss_dssp ECSSEEEEECTTCSSTTCEEEEESSCCCSGGGCCHHHHHHHH
T ss_pred ECCCEEEEEcCCCCCCcEEEEEEeeccCChhhCCHHHHHHHH
Confidence 467788999999988999999999998765 89998865543
No 7
>2eo4_A 150AA long hypothetical histidine triad nucleotid protein; HIT family, structural genomics, NPPSFA; 1.80A {Sulfolobus tokodaii}
Probab=66.46 E-value=5.8 Score=31.54 Aligned_cols=41 Identities=15% Similarity=0.157 Sum_probs=34.3
Q ss_pred CCceEEEEecCCCCCCeeEEEEeCCCeecC-CCCHHHHHHHH
Q 024694 196 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEIV 236 (264)
Q Consensus 196 ~e~~v~VfvPtsp~tsG~l~lV~~~~V~~l-DmsveeAmk~i 236 (264)
+++.+.+|+|-.|..-|-++++|++-+..+ |++-+|...+.
T Consensus 18 e~~~~~a~~d~~p~~pgh~lViPk~H~~~~~dL~~~e~~~l~ 59 (149)
T 2eo4_A 18 EDEKFAAILDKYPVSLGHTLVIPKKHFENYLEADEDTLAELA 59 (149)
T ss_dssp ECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHH
T ss_pred ECCCEEEEECCCCCCCCeEEEEechhhCCHhHCCHHHHHHHH
Confidence 467789999999988899999999988775 89988876554
No 8
>3l7x_A SMU.412C, putative HIT-like protein involved in cell-cycle regulation; 1.70A {Streptococcus mutans}
Probab=65.51 E-value=6.2 Score=32.79 Aligned_cols=41 Identities=12% Similarity=0.264 Sum_probs=34.2
Q ss_pred CCceEEEEecCCCCCCeeEEEEeCCCeecC-CCCHHHHHHHH
Q 024694 196 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEIV 236 (264)
Q Consensus 196 ~e~~v~VfvPtsp~tsG~l~lV~~~~V~~l-DmsveeAmk~i 236 (264)
+++.+.+|+|-.|.+-|-++++|++.+..+ |++-||...+.
T Consensus 55 e~e~~~afld~~P~~pgH~LVIPkrHv~~l~dL~~ee~~~L~ 96 (173)
T 3l7x_A 55 EDEDVLAFLDISQATKGHTLVIPKEHVRNALEMTQTQAANLF 96 (173)
T ss_dssp ECSSEEEEECTTCSSTTCEEEEESSCCSCGGGCCHHHHHHHH
T ss_pred ECCCEEEEEcCCCCCCcEEEEEeccccCChhhCCHHHHHHHH
Confidence 467888999999988999999999998765 89988865543
No 9
>2oik_A Histidine triad (HIT) protein; HIT-like fold, structural genomics, joint center for structu genomics, JCSG; HET: MSE; 1.65A {Methylobacillus flagellatus} SCOP: d.13.1.1
Probab=63.99 E-value=7.3 Score=31.19 Aligned_cols=40 Identities=25% Similarity=0.263 Sum_probs=33.7
Q ss_pred CCceEEEEecCCCCCCeeEEEEeCCCeecC-CCCHHHHHHH
Q 024694 196 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEI 235 (264)
Q Consensus 196 ~e~~v~VfvPtsp~tsG~l~lV~~~~V~~l-DmsveeAmk~ 235 (264)
+++.+.+|+|-.|..-|.++++|++-+..+ |++-||...+
T Consensus 25 e~~~~~a~~d~~p~~pgh~LViPk~H~~~l~dL~~~~~~~l 65 (154)
T 2oik_A 25 QDALCRVVHVENQDYPGFCRVILNRHVKEMSDLRPAERDHL 65 (154)
T ss_dssp ECSSEEEEECCCTTCTTCEEEEESSCCSCGGGSCHHHHHHH
T ss_pred ECCcEEEEEcCCCCCCeEEEEEecCCcCChHHCCHHHHHHH
Confidence 467789999999988899999999999775 8998886544
No 10
>1y23_A HIT, histidine triad protein; HIT protein, PKCI-1, cell-cycle regulation, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Bacillus subtilis} SCOP: d.13.1.1
Probab=62.80 E-value=5 Score=31.59 Aligned_cols=40 Identities=10% Similarity=0.197 Sum_probs=33.3
Q ss_pred CCceEEEEecCCCCCCeeEEEEeCCCeecC-CCCHHHHHHH
Q 024694 196 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEI 235 (264)
Q Consensus 196 ~e~~v~VfvPtsp~tsG~l~lV~~~~V~~l-DmsveeAmk~ 235 (264)
+++.+.+|+|-.|..-|.++++|++.+..+ |++-+|...+
T Consensus 24 e~~~~~a~~~~~p~~pgh~LViPk~h~~~l~dL~~~~~~~l 64 (145)
T 1y23_A 24 EDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQY 64 (145)
T ss_dssp ECSSEEEEECTTCSSTTCEEEEESSCCSSGGGCCHHHHHTT
T ss_pred ECCCEEEEECCCCCCCCeEEEEEhhhhhhHHhCCHHHHHHH
Confidence 357789999999988899999999988775 8998886543
No 11
>3r6f_A HIT family protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, protozoan parasite; 1.85A {Encephalitozoon cuniculi}
Probab=59.60 E-value=3.3 Score=32.63 Aligned_cols=37 Identities=16% Similarity=0.088 Sum_probs=31.6
Q ss_pred CCceEEEEecCCCCCCeeEEEEeCCCeecC-CCCHHHH
Q 024694 196 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREG 232 (264)
Q Consensus 196 ~e~~v~VfvPtsp~tsG~l~lV~~~~V~~l-DmsveeA 232 (264)
+++.+.+|+|-.|.+-|-++++|++.+..+ |++.||.
T Consensus 23 e~~~~~af~d~~p~~pgh~lViPk~H~~~l~dL~~~~~ 60 (135)
T 3r6f_A 23 ETDRLFALIDRYPLSKGHFLVIPKAHHPYLHNYKPEEL 60 (135)
T ss_dssp ECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCGGGG
T ss_pred ECCCEEEEECCCCCCCCeEEEEEhhHhCCHhHCCHHHH
Confidence 467889999999988999999999998765 8887764
No 12
>3n1s_A HIT-like protein HINT; histidine triad nucleotide binding protein, GMP, hydro; HET: 5GP; 1.45A {Escherichia coli} SCOP: d.13.1.0 PDB: 3n1t_A*
Probab=59.15 E-value=9.2 Score=29.36 Aligned_cols=36 Identities=11% Similarity=0.160 Sum_probs=30.5
Q ss_pred CCceEEEEecCCCCCCeeEEEEeCCCeecC-CCCHHH
Q 024694 196 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVRE 231 (264)
Q Consensus 196 ~e~~v~VfvPtsp~tsG~l~lV~~~~V~~l-Dmsvee 231 (264)
+++.+.+|.+-.|..-|-++++|++-+..+ |++-||
T Consensus 22 ede~~~af~d~~P~~pgH~LViPk~Hv~~l~dL~~~e 58 (119)
T 3n1s_A 22 QDDLVTAFRDISPQAPTHILIIPNILIPTVNDVSAEH 58 (119)
T ss_dssp ECSSEEEEECSSCSSSEEEEEEESSCCCSGGGCCGGG
T ss_pred ECCCEEEEECCCCCCCCeEEEEehhHhCCHhHcCHHH
Confidence 357788999999988899999999998775 888773
No 13
>3oj7_A Putative histidine triad family protein; hydrolase, structural genomics, seattle structural genomics for infectious disease, ssgcid; 1.40A {Entamoeba histolytica} SCOP: d.13.1.0 PDB: 3omf_A* 3oxk_A*
Probab=58.05 E-value=6.8 Score=29.81 Aligned_cols=36 Identities=11% Similarity=0.191 Sum_probs=29.6
Q ss_pred CCceEEEEecCCCCCCeeEEEEeCCCeecC-CCCHHH
Q 024694 196 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVRE 231 (264)
Q Consensus 196 ~e~~v~VfvPtsp~tsG~l~lV~~~~V~~l-Dmsvee 231 (264)
+++.+.+|+|-.|..-|-++++|++-+..+ |++-||
T Consensus 26 e~~~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e 62 (117)
T 3oj7_A 26 EDDEIFAFKDINPIAPIHILVIPKQHIASLNEITEEN 62 (117)
T ss_dssp ECSSEEEEECSSCSSSEEEEEEESSCCCSGGGCCTTT
T ss_pred ECCcEEEEECCCCCCCceEEEEechHhCCHHHCCHHH
Confidence 357788999999988899999999998765 777553
No 14
>4egu_A Histidine triad (HIT) protein; structural genomics, center for structural genomics of infec diseases, csgid, HIT domain, unknown function; HET: 5GP; 0.95A {Clostridium difficile}
Probab=57.89 E-value=5.6 Score=30.34 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=30.0
Q ss_pred CCceEEEEecCCCCCCeeEEEEeCCCeecC-CCCHHH
Q 024694 196 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVRE 231 (264)
Q Consensus 196 ~e~~v~VfvPtsp~tsG~l~lV~~~~V~~l-Dmsvee 231 (264)
+++.+.+|+|-.|.+-|-++++|++-+..+ |++-||
T Consensus 23 e~e~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e 59 (119)
T 4egu_A 23 EDDRVLAFNDLNPVAPYHILVVPKKHYDSLIDIPDKE 59 (119)
T ss_dssp ECSSEEEEECSSCSSSEEEEEEESSCCSSGGGSCGGG
T ss_pred ECCCEEEEECCCCCCCceEEEEechhhCCHhHCCHhH
Confidence 457788999999988899999999998765 787653
No 15
>3o1c_A Histidine triad nucleotide-binding protein 1; hydrolase, HINT protein, HIT protein, adenosine 5'- monophosphoramidase; HET: ADN; 1.08A {Oryctolagus cuniculus} SCOP: d.13.1.1 PDB: 3llj_A* 1rzy_A* 3qgz_A* 3o1z_A 3o1x_A* 4eqe_A* 4eqg_A* 4eqh_A* 3tw2_A* 1kpb_A 1kpf_A* 1kpa_A 1kpc_A 1av5_A* 1kpe_A* 4rhn_A* 3rhn_A* 5rhn_A* 6rhn_A
Probab=48.12 E-value=14 Score=28.61 Aligned_cols=36 Identities=8% Similarity=0.101 Sum_probs=30.2
Q ss_pred CCceEEEEecCCCCCCeeEEEEeCCCeecC-CCCHHH
Q 024694 196 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVRE 231 (264)
Q Consensus 196 ~e~~v~VfvPtsp~tsG~l~lV~~~~V~~l-Dmsvee 231 (264)
+++.+.+|.+-.|..-|-++++|++-+..+ |++-+|
T Consensus 34 e~e~~~af~d~~P~~pgH~LViPk~H~~~l~dL~~~e 70 (126)
T 3o1c_A 34 EDDQALAFHDISPQAPTHFLVIPKKHISQISAAEDAD 70 (126)
T ss_dssp ECSSEEEEECSSCSSSEEEEEEESSCCCCGGGCCGGG
T ss_pred ECCCEEEEECCCCCCCceEEEEechHhchHhhCchhH
Confidence 467888999999988899999999998765 787655
No 16
>1xqu_A HIT family hydrolase; protein STRU initiative, PSI, southeast collaboratory for structural GEN secsg; 2.30A {Clostridium thermocellum} SCOP: d.13.1.1
Probab=46.06 E-value=9.9 Score=30.65 Aligned_cols=36 Identities=11% Similarity=0.129 Sum_probs=29.7
Q ss_pred CCceEEEEecCCCCCCeeEEEEeCCCeecC-CCCHHH
Q 024694 196 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVRE 231 (264)
Q Consensus 196 ~e~~v~VfvPtsp~tsG~l~lV~~~~V~~l-Dmsvee 231 (264)
+++.+.+|+|-.|..-|-++++|++-+..+ |++-||
T Consensus 54 e~e~~~af~d~~P~~pgH~LViPkrHv~~l~dL~~~e 90 (147)
T 1xqu_A 54 EDERVIAIKDINPAAPVHVLIIPKEHIANVKEINESN 90 (147)
T ss_dssp ECSSEEEEECSSCSSSEEEEEEESSCCSSGGGCCTTT
T ss_pred ECCcEEEEEecCCCCccEEEEEeCcccCChhHCCHHH
Confidence 467889999999988999999999988765 776543
No 17
>3ano_A AP-4-A phosphorylase; diadenosine polyphosphate, HIT transferase; HET: PG4; 1.89A {Mycobacterium tuberculosis}
Probab=44.34 E-value=23 Score=30.53 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=33.4
Q ss_pred CCceEEEEecCCCCCCeeEEEEeCCCeecC-CCCHHHHHHH
Q 024694 196 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEI 235 (264)
Q Consensus 196 ~e~~v~VfvPtsp~tsG~l~lV~~~~V~~l-DmsveeAmk~ 235 (264)
..+.+.+|++-.|..-|-++++|++-+..+ |++-+|...+
T Consensus 89 edd~~~afld~~P~~pGH~LVIPkrHv~~l~dL~~ee~~~L 129 (218)
T 3ano_A 89 RGKLVYAVLNLYPYNPGHLMVVPYRRVSELEDLTDLESAEL 129 (218)
T ss_dssp ECSSEEEEECSSCSSTTCEEEEESSCCCCGGGSCHHHHHHH
T ss_pred ECCcEEEEEccCCCCCcEEEEEechhhCChhhCCHHHHHHH
Confidence 467889999988877899999999998775 8998886543
No 18
>2gww_B IPAA; protein complex, cell adhesion, structural protein; 2.72A {Shigella flexneri}
Probab=35.36 E-value=16 Score=21.72 Aligned_cols=15 Identities=33% Similarity=0.733 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHhC
Q 024694 143 RHIYNASKQISAAIS 157 (264)
Q Consensus 143 k~IY~~iKqv~~~~~ 157 (264)
+.||++.||+..+++
T Consensus 9 nniykaakdvttsls 23 (30)
T 2gww_B 9 NNIYKAAKDVTTSLS 23 (30)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 479999999999876
No 19
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=34.43 E-value=33 Score=31.72 Aligned_cols=41 Identities=17% Similarity=0.232 Sum_probs=34.5
Q ss_pred CCceEEEEecCCCCCCeeEEEEeCCCeecC-CCCHHHHHHHH
Q 024694 196 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEIV 236 (264)
Q Consensus 196 ~e~~v~VfvPtsp~tsG~l~lV~~~~V~~l-DmsveeAmk~i 236 (264)
+++++.+|+|-.|..-|.++++|++.+..+ |++-+|...+.
T Consensus 314 e~~~~~a~~~~~p~~pgh~lviPk~h~~~~~~l~~~~~~~l~ 355 (440)
T 1ems_A 314 STPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADLF 355 (440)
T ss_dssp ECSSEEEEECSSCSSTTCEEEEESSCCSCGGGSCHHHHHHHH
T ss_pred ECCCEEEEEcCCcCCCCeEEEEEccccCChhHCCHHHHHHHH
Confidence 567889999999988899999999988775 89988866544
No 20
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=32.62 E-value=26 Score=21.89 Aligned_cols=18 Identities=11% Similarity=0.218 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 024694 65 GCVILFPIAVTFYITWWF 82 (264)
Q Consensus 65 GLlvLLPi~iTi~Il~w~ 82 (264)
|+..++|+++.+.++||+
T Consensus 2 ~~~~~l~~v~~~~ifYFl 19 (37)
T 2rdd_B 2 PMSLILMLVVFGLIFYFM 19 (37)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 455677877777666654
No 21
>1gup_A Galactose-1-phosphate uridylyltransferase; nucleotidyltransferase, galactose metabolism; HET: GDU; 1.80A {Escherichia coli} SCOP: d.13.1.2 d.13.1.2 PDB: 1guq_A* 1hxq_A* 1hxp_A*
Probab=31.99 E-value=39 Score=30.81 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=33.0
Q ss_pred CCceEEEEecCCCCCCeeEEEEeCCCeecC-CCCHHHHHH
Q 024694 196 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIE 234 (264)
Q Consensus 196 ~e~~v~VfvPtsp~tsG~l~lV~~~~V~~l-DmsveeAmk 234 (264)
+++.+.+|+|-.|.+-|-++++|++.+..+ |++-+|...
T Consensus 215 E~e~~~af~~~~p~~pgh~lViPK~Hv~~l~dL~~~e~~~ 254 (348)
T 1gup_A 215 ETEHWLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSD 254 (348)
T ss_dssp ECSSEEEECCTTCCSTTCEEEEESSCCSSGGGCCHHHHHH
T ss_pred eCCcEEEEEccCCCCceEEEEEeCcccCChHHCCHHHHHH
Confidence 467899999999988899999999998775 898887643
No 22
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=31.14 E-value=54 Score=20.87 Aligned_cols=21 Identities=19% Similarity=0.586 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 024694 104 LGFITSVTFIFLIGVFMSSWL 124 (264)
Q Consensus 104 lgll~~llliflvG~l~~~~l 124 (264)
.|+++.++-+.++|+++..|.
T Consensus 7 ~GIVlGlipvtlaGLfv~Ay~ 27 (37)
T 1q90_G 7 CGIVLGLVPVTIAGLFVTAYL 27 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHhhHHHHHHHHHHHHHH
Confidence 578888888999999988764
No 23
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}
Probab=28.34 E-value=60 Score=26.09 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=28.4
Q ss_pred CceEEEEecCCCCCCeeEEEEeCCCeecC-CCCHHHHHHH
Q 024694 197 EELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEI 235 (264)
Q Consensus 197 e~~v~VfvPtsp~tsG~l~lV~~~~V~~l-DmsveeAmk~ 235 (264)
.+.+.||+=-.|.+-|.++++|++.+..+ |++.||+.++
T Consensus 19 ~~~~~v~L~~~p~~pGh~LV~pk~Hv~~l~dL~~e~~~~l 58 (149)
T 3i24_A 19 LPLCKVLLIKEDIGPWLILVPRIEELKEIHHMTDEQQIQF 58 (149)
T ss_dssp CSSEEEEEECBSSTTEEEEEESCTTCSSGGGSCHHHHHHH
T ss_pred CCCEEEEEcCCCCCCEEEEEeCccccCChhHCCHHHHHHH
Confidence 45667777777766688776666678765 9999987544
No 24
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Probab=28.31 E-value=66 Score=25.27 Aligned_cols=40 Identities=13% Similarity=0.205 Sum_probs=29.3
Q ss_pred CceEEEEecCCCCCCeeEEEEeCCCeecC-CCCHHHHHHHH
Q 024694 197 EELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEIV 236 (264)
Q Consensus 197 e~~v~VfvPtsp~tsG~l~lV~~~~V~~l-DmsveeAmk~i 236 (264)
.+.+.||+=-.|.+-|.++++|++.+..+ |++-||+.++.
T Consensus 19 ~~~~~v~l~~~p~~pGh~lV~~k~h~~~l~dl~~~~~~~l~ 59 (137)
T 3ohe_A 19 SRLCDVLLMNDNTWPWVILVPRVSGIREIYELPNEQQQRLL 59 (137)
T ss_dssp CSSEEEEEESCTTSCEEEEEESCTTCCSGGGSCHHHHHHHH
T ss_pred CCcEEEEEcCCCCCCEEEEEecccccCChHHCCHHHHHHHH
Confidence 45667777777766788877777888775 99999875443
No 25
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=25.64 E-value=1.9e+02 Score=21.15 Aligned_cols=46 Identities=13% Similarity=0.047 Sum_probs=30.0
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 024694 40 SSSHHAGRETFSKVVRSWASKKFMTGCVILFPIAVTFYITWWFIHF 85 (264)
Q Consensus 40 ~~~~~~~~~~~~~~lr~~l~~~FltGLlvLLPi~iTi~Il~w~~~~ 85 (264)
+..+.+-...|.+-+....||.-=+-+.++.|++++.++..|.-+-
T Consensus 20 P~~Qr~~~g~~~~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~ 65 (81)
T 1pp9_G 20 PFEQRAFPHYFSKGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQE 65 (81)
T ss_dssp TTTBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccccchHhhhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHH
Confidence 3344444455666666666666555668888888888887776553
No 26
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum}
Probab=24.67 E-value=79 Score=25.37 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=26.4
Q ss_pred ceEEEEecCCCCCCeeEEEEeCC-CeecC-CCCHHHHHHHH
Q 024694 198 ELCCVYVPTNHLYIGDIFLINTK-DVIRP-NLSVREGIEIV 236 (264)
Q Consensus 198 ~~v~VfvPtsp~tsG~l~lV~~~-~V~~l-DmsveeAmk~i 236 (264)
..+.||+ ..|++-|.+++||++ -+..+ |++.||..++.
T Consensus 25 p~~~v~l-~~~~~~~H~LVIPk~~H~~~l~dL~~e~~~~l~ 64 (149)
T 3i4s_A 25 PLSKVLV-IKDANYPWLLLVPRRPDAVEIIDLDEVQQAQLM 64 (149)
T ss_dssp SSEEEEE-ESCTTSCEEEEEECCTTCCSGGGSCHHHHHHHH
T ss_pred CceEEEE-CCCCCCCEEEEEecccccCChhHCCHHHHHHHH
Confidence 3455555 345556678899999 48775 99999876553
No 27
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=20.23 E-value=56 Score=20.79 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 024694 104 LGFITSVTFIFLIGVFMSSWL 124 (264)
Q Consensus 104 lgll~~llliflvG~l~~~~l 124 (264)
.|+++.++-+.++|+++..|.
T Consensus 7 ~GIVlGlipvtl~GLfv~Ay~ 27 (37)
T 1vf5_G 7 DGLVLGLVFATLGGLFYAAYQ 27 (37)
T ss_dssp --CHHHHHHHHHHHHTHHHHH
T ss_pred hhHHHhhHHHHHHHHHHHHHH
Confidence 467777788899999988764
No 28
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1
Probab=20.01 E-value=2.5e+02 Score=24.01 Aligned_cols=37 Identities=8% Similarity=0.030 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhchhceeh
Q 024694 107 ITSVTFIFLIGVFMSS--WLGASVLSLGEWFIKRMPFVR 143 (264)
Q Consensus 107 l~~llliflvG~l~~~--~lg~~l~~~~E~~l~rIPlVk 143 (264)
++.+++-+.+|++... ..+++++..+=.+..-+|.+-
T Consensus 96 ~l~~~lg~~~a~~l~~~~~~~~~~~~~~~~~~~~iP~~v 134 (295)
T 3d31_C 96 LLALLLGAPTGYILARFDFPGKRLVESIIDVPVVVPHTV 134 (295)
T ss_dssp HHHHHHHHHHHHHHTTCCCTTHHHHHHHHHGGGTSCHHH
T ss_pred HHHHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHH
Confidence 3334444555555443 234555544444555677543
Done!