Query 024694
Match_columns 264
No_of_seqs 139 out of 625
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 12:48:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024694.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024694hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fita_ d.13.1.1 (A:) FHIT (fr 69.3 2.2 0.00016 32.3 4.1 42 196-237 17-59 (146)
2 d1y23a_ d.13.1.1 (A:) Hit {Bac 68.3 2 0.00014 31.9 3.6 39 196-234 20-59 (139)
3 d2oika1 d.13.1.1 (A:6-144) His 60.4 4.4 0.00032 30.0 4.3 42 196-237 19-61 (139)
4 d1emsa1 d.13.1.1 (A:281-440) N 55.4 5.5 0.0004 30.6 4.1 40 196-235 34-74 (160)
5 d1guqa2 d.13.1.2 (A:178-348) G 51.8 7.2 0.00053 29.6 4.3 39 196-234 38-77 (171)
6 d1xqua_ d.13.1.1 (A:) Putative 42.7 5.1 0.00037 28.6 1.9 33 196-228 21-54 (113)
7 d1z84a2 d.13.1.2 (A:196-351) G 40.9 15 0.0011 27.5 4.5 40 196-235 35-75 (156)
8 d1pw4a_ f.38.1.1 (A:) Glycerol 39.2 86 0.0063 24.9 10.2 21 34-54 2-22 (447)
9 d1kpfa_ d.13.1.1 (A:) Protein 35.5 13 0.00096 26.3 3.2 36 196-231 19-55 (111)
10 d1q90g_ f.23.26.1 (G:) PetG su 29.6 31 0.0022 19.4 3.4 21 104-124 7-27 (30)
11 d2axtl1 f.23.31.1 (L:1-37) Pho 24.4 41 0.003 19.7 3.4 21 104-124 15-35 (37)
No 1
>d1fita_ d.13.1.1 (A:) FHIT (fragile histidine triad protein) {Human (Homo sapiens) [TaxId: 9606]}
Probab=69.26 E-value=2.2 Score=32.32 Aligned_cols=42 Identities=19% Similarity=0.239 Sum_probs=35.4
Q ss_pred CCceEEEEecCCCCCCeeEEEEeCCCeecC-CCCHHHHHHHHh
Q 024694 196 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEIVV 237 (264)
Q Consensus 196 ~e~~v~VfvPtsp~tsG~l~lV~~~~V~~l-DmsveeAmk~ii 237 (264)
+++.+.+|++..|..-|-++++|++-+..+ |++-||+..+.-
T Consensus 17 e~e~~~afld~~P~~pgH~LViPk~H~~~l~dL~~~e~~~l~~ 59 (146)
T d1fita_ 17 KTELSFALVNRKPVVPGHVLVCPLRPVERFHDLRPDEVADLFQ 59 (146)
T ss_dssp ECSSEEEEECSSCSSTTCEEEEESSCCSSGGGSCHHHHHHHHH
T ss_pred ECCCEEEEECCCCCCCcEEEEEecceehHHHHhhHHHHHHHHH
Confidence 567899999999988999999999999875 999887765443
No 2
>d1y23a_ d.13.1.1 (A:) Hit {Bacillus subtilis [TaxId: 1423]}
Probab=68.34 E-value=2 Score=31.90 Aligned_cols=39 Identities=10% Similarity=0.208 Sum_probs=33.2
Q ss_pred CCceEEEEecCCCCCCeeEEEEeCCCeecC-CCCHHHHHH
Q 024694 196 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIE 234 (264)
Q Consensus 196 ~e~~v~VfvPtsp~tsG~l~lV~~~~V~~l-DmsveeAmk 234 (264)
+++++.||++..|..-|.++++|++.+..+ |++.++...
T Consensus 20 ede~~~af~d~~P~~~GH~LViPk~H~~~~~dL~~~~~~~ 59 (139)
T d1y23a_ 20 EDEHVLAFLDISQVTKGHTLVIPKTHIENVYEFTDELAKQ 59 (139)
T ss_dssp ECSSEEEEECTTCSSTTCEEEEESSCCSSGGGCCHHHHHT
T ss_pred ECCCEEEEecCCCCCCcEEEEEEecccccccccchHHHHH
Confidence 356889999999988899999999999875 899887643
No 3
>d2oika1 d.13.1.1 (A:6-144) Histidine triad protein Mfla2506 {Methylobacillus flagellatus [TaxId: 405]}
Probab=60.42 E-value=4.4 Score=30.02 Aligned_cols=42 Identities=24% Similarity=0.278 Sum_probs=34.5
Q ss_pred CCceEEEEecCCCCCCeeEEEEeCCCeecC-CCCHHHHHHHHh
Q 024694 196 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEIVV 237 (264)
Q Consensus 196 ~e~~v~VfvPtsp~tsG~l~lV~~~~V~~l-DmsveeAmk~ii 237 (264)
.++.+.||+.-.|.+-|.++++|++.+..+ |++-+|...+.-
T Consensus 19 e~~~~~v~l~~~p~~pGh~Lvipk~H~~~l~dL~~~e~~~l~~ 61 (139)
T d2oika1 19 QDALCRVVHVENQDYPGFCRVILNRHVKEMSDLRPAERDHLML 61 (139)
T ss_dssp ECSSEEEEECCCTTCTTCEEEEESSCCSCGGGSCHHHHHHHHH
T ss_pred ECCCEEEEEcCCCCCCcEEEEecccccchhhhccHHHHHHHHH
Confidence 356788999888876799999999999876 999998876643
No 4
>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=55.41 E-value=5.5 Score=30.65 Aligned_cols=40 Identities=18% Similarity=0.237 Sum_probs=34.1
Q ss_pred CCceEEEEecCCCCCCeeEEEEeCCCeecC-CCCHHHHHHH
Q 024694 196 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEI 235 (264)
Q Consensus 196 ~e~~v~VfvPtsp~tsG~l~lV~~~~V~~l-DmsveeAmk~ 235 (264)
+++++.+|+.-.|.+-|-++++|++-+..+ |++-||...+
T Consensus 34 ede~~~af~Di~P~~pgH~LVIPK~H~~~l~dL~~ee~~~l 74 (160)
T d1emsa1 34 STPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAETADL 74 (160)
T ss_dssp ECSSEEEEECSSCSSTTCEEEEESSCCSCGGGSCHHHHHHH
T ss_pred eCCCEEEEECCCCCCCCeEEEEEecccchhhhhhhHHHHHH
Confidence 577889999999988899999999999875 9998886543
No 5
>d1guqa2 d.13.1.2 (A:178-348) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]}
Probab=51.82 E-value=7.2 Score=29.58 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=32.5
Q ss_pred CCceEEEEecCCCCCCeeEEEEeCCCeecC-CCCHHHHHH
Q 024694 196 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIE 234 (264)
Q Consensus 196 ~e~~v~VfvPtsp~tsG~l~lV~~~~V~~l-DmsveeAmk 234 (264)
.++.+.+|+|-+|..-|-+.++|++.+-.+ |++-+|...
T Consensus 38 e~e~~~af~~~~p~~p~h~lIiPk~h~~~~~~l~~~e~~~ 77 (171)
T d1guqa2 38 ETEHWLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSD 77 (171)
T ss_dssp ECSSEEEECCTTCCSTTCEEEEESSCCSSGGGCCHHHHHH
T ss_pred ECCeEEEEEcCCCCCcceEEEecchhcCChhhCCHHHHHH
Confidence 467889999999988899999999999765 888766543
No 6
>d1xqua_ d.13.1.1 (A:) Putative hydrolase {Clostridium thermocellum [TaxId: 1515]}
Probab=42.73 E-value=5.1 Score=28.64 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=27.0
Q ss_pred CCceEEEEecCCCCCCeeEEEEeCCCeecC-CCC
Q 024694 196 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLS 228 (264)
Q Consensus 196 ~e~~v~VfvPtsp~tsG~l~lV~~~~V~~l-Dms 228 (264)
+++.+.+|++..|.+-|-++++|++-+..+ |++
T Consensus 21 ede~~~af~d~~P~~~gH~LViPk~H~~~~~~l~ 54 (113)
T d1xqua_ 21 EDERVIAIKDINPAAPVHVLIIPKEHIANVKEIN 54 (113)
T ss_dssp ECSSEEEEECSSCSSSEEEEEEESSCCSSGGGCC
T ss_pred eCCCEEEEECCCCCCCceEEEeecccccchhhcc
Confidence 457889999999988999999999887654 444
No 7
>d1z84a2 d.13.1.2 (A:196-351) Galactose-1-phosphate uridylyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=40.92 E-value=15 Score=27.54 Aligned_cols=40 Identities=15% Similarity=0.207 Sum_probs=32.7
Q ss_pred CCceEEEEecCCCCCCeeEEEEeCCCeecC-CCCHHHHHHH
Q 024694 196 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVREGIEI 235 (264)
Q Consensus 196 ~e~~v~VfvPtsp~tsG~l~lV~~~~V~~l-DmsveeAmk~ 235 (264)
.++.+.+|+|-+|..-|-+.++|++.+-.+ |++-+|...+
T Consensus 35 e~~~~~a~~p~~p~~p~h~lIiPk~h~~~~~~l~~~e~~~l 75 (156)
T d1z84a2 35 ESSHFVSVAPFAATYPFEIWIIPKDHSSHFHHLDDVKAVDL 75 (156)
T ss_dssp ECSSEEEEECTTCSSTTCEEEEESSCCSCGGGCCHHHHHHH
T ss_pred ECCCEEEEEccCCCcCcEEEEEecchhhhhccCCHHHHHHH
Confidence 356789999999977899999999999875 8988765443
No 8
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=39.16 E-value=86 Score=24.85 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCCChhHHHHHH
Q 024694 34 KPSSSSSSSHHAGRETFSKVV 54 (264)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~l 54 (264)
+|+|..+..+.+..+.-+++.
T Consensus 2 ~pap~~~~~p~~~~~~~~~~~ 22 (447)
T d1pw4a_ 2 KPAPHKARLPAAEIDPTYRRL 22 (447)
T ss_dssp CCCCCCCCCCCSCCHHHHHHH
T ss_pred CCCCCCCCCChhhhccchhhH
Confidence 344444444444444444444
No 9
>d1kpfa_ d.13.1.1 (A:) Protein kinase C inhibitor-1, PKCI-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.46 E-value=13 Score=26.30 Aligned_cols=36 Identities=11% Similarity=0.182 Sum_probs=28.9
Q ss_pred CCceEEEEecCCCCCCeeEEEEeCCCeecC-CCCHHH
Q 024694 196 EEELCCVYVPTNHLYIGDIFLINTKDVIRP-NLSVRE 231 (264)
Q Consensus 196 ~e~~v~VfvPtsp~tsG~l~lV~~~~V~~l-Dmsvee 231 (264)
++|.+.+|....|..-|-++++|++-+..+ |++.|+
T Consensus 19 ede~~~af~D~~P~~~gH~LViPk~H~~~~~~l~~~~ 55 (111)
T d1kpfa_ 19 EDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDD 55 (111)
T ss_dssp ECSSEEEEECSSCSSSEEEEEEESSCCSCGGGCCGGG
T ss_pred eCCCEEEEecCCCCCCceEEEeecchhcchhhhhhHH
Confidence 356788899888888899999999988765 676654
No 10
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=29.64 E-value=31 Score=19.38 Aligned_cols=21 Identities=19% Similarity=0.586 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 024694 104 LGFITSVTFIFLIGVFMSSWL 124 (264)
Q Consensus 104 lgll~~llliflvG~l~~~~l 124 (264)
.|+++.++=+.++|+++..|+
T Consensus 7 ~GivlGlipiTl~Glfv~Ayl 27 (30)
T d1q90g_ 7 CGIVLGLVPVTIAGLFVTAYL 27 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHhhHHHHHHHHHHHHHH
Confidence 467777777889999988764
No 11
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=24.37 E-value=41 Score=19.75 Aligned_cols=21 Identities=14% Similarity=0.461 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 024694 104 LGFITSVTFIFLIGVFMSSWL 124 (264)
Q Consensus 104 lgll~~llliflvG~l~~~~l 124 (264)
-++...+++||+.|++.++++
T Consensus 15 tsLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 15 TSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHh
Confidence 345556778899999988875
Done!