Your job contains 1 sequence.
>024696
MALQIPMDILPLEGYVCPLLLILSCFKLLVWLLVWYFLSLIKVLCLFNTAFQKRNGYSQG
KRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRF
AFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYC
TNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVL
GSLPIRVSPSKTPVRPRAPRPPLH
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 024696
(264 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2139242 - symbol:CID12 "CTC-interacting domain... 905 9.3e-91 1
TAIR|locus:2035629 - symbol:CID11 "CTC-interacting domain... 886 9.6e-89 1
TAIR|locus:2082961 - symbol:CID10 "CTC-interacting domain... 886 9.6e-89 1
TAIR|locus:2091657 - symbol:CID9 "CTC-interacting domain ... 868 7.7e-87 1
TAIR|locus:2024842 - symbol:CID8 "CTC-interacting domain ... 854 2.4e-85 1
TAIR|locus:2184022 - symbol:CID13 "CTC-interacting domain... 732 2.0e-72 1
UNIPROTKB|J9P0H2 - symbol:SREK1 "Uncharacterized protein"... 153 1.0e-10 2
UNIPROTKB|F1NA16 - symbol:Gga.54187 "Uncharacterized prot... 141 8.3e-10 2
TAIR|locus:2100696 - symbol:PHIP1 "phragmoplastin interac... 155 8.4e-09 2
ZFIN|ZDB-GENE-040801-132 - symbol:srek1 "splicing regulat... 153 1.5e-08 2
FB|FBgn0005649 - symbol:Rox8 "Rox8" species:7227 "Drosoph... 154 1.5e-08 1
RGD|621696 - symbol:Srek1 "splicing regulatory glutamine/... 153 2.2e-08 1
UNIPROTKB|Q9JKL7 - symbol:Srek1 "Splicing regulatory glut... 153 2.2e-08 1
MGI|MGI:2145245 - symbol:Srek1 "splicing regulatory gluta... 153 2.2e-08 1
UNIPROTKB|Q8WXA9 - symbol:SREK1 "Splicing regulatory glut... 153 2.3e-08 1
UNIPROTKB|E2R749 - symbol:SREK1 "Uncharacterized protein"... 153 2.3e-08 1
TAIR|locus:2040625 - symbol:PAB7 "poly(A) binding protein... 154 2.3e-08 1
TAIR|locus:2009036 - symbol:PAB1 "poly(A) binding protein... 149 4.6e-08 1
UNIPROTKB|Q9LEB4 - symbol:RBP45 "Polyadenylate-binding pr... 146 1.0e-07 1
POMBASE|SPBC1861.04c - symbol:SPBC1861.04c "RNA-binding p... 150 1.4e-07 1
FB|FBgn0035016 - symbol:CG4612 species:7227 "Drosophila m... 142 1.6e-07 1
TAIR|locus:2086884 - symbol:NUC-L2 "nucleolin like 2" spe... 144 3.6e-07 1
TAIR|locus:2160210 - symbol:RBP45A "RNA-binding protein 4... 138 8.0e-07 1
POMBASE|SPAC19G12.07c - symbol:rsd1 "RNA-binding protein ... 139 1.3e-06 1
FB|FBgn0028577 - symbol:pUf68 "poly U binding factor 68kD... 139 1.4e-06 1
TAIR|locus:2116322 - symbol:ATRBP45C species:3702 "Arabid... 136 1.5e-06 2
POMBASE|SPBC16E9.12c - symbol:pab2 "poly(A) binding prote... 119 2.2e-06 1
DICTYBASE|DDB_G0277371 - symbol:pabpn1 "polyadenylate-bin... 127 3.4e-06 1
DICTYBASE|DDB_G0275459 - symbol:DDB_G0275459 "RNA-binding... 130 3.9e-06 1
ASPGD|ASPL0000010999 - symbol:fabM species:162425 "Emeric... 135 4.9e-06 1
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 134 5.5e-06 1
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 133 5.9e-06 1
UNIPROTKB|Q804A5 - symbol:Pabpn1l-a "Embryonic polyadenyl... 123 1.0e-05 1
WB|WBGene00003904 - symbol:pabp-2 species:6239 "Caenorhab... 121 1.3e-05 1
UNIPROTKB|A4QUF0 - symbol:PAB1 "Polyadenylate-binding pro... 131 1.5e-05 1
WB|WBGene00020354 - symbol:T08B6.5 species:6239 "Caenorha... 117 1.7e-05 1
WB|WBGene00004704 - symbol:rsp-7 species:6239 "Caenorhabd... 89 2.0e-05 2
DICTYBASE|DDB_G0291386 - symbol:DDB_G0291386 "RNA recogni... 127 2.0e-05 1
TAIR|locus:2150215 - symbol:AT5G19350 species:3702 "Arabi... 103 2.3e-05 2
ZFIN|ZDB-GENE-080709-5 - symbol:pabpn1l "poly(A) binding ... 118 2.3e-05 1
UNIPROTKB|H0YEM1 - symbol:PUF60 "Poly(U)-binding-splicing... 124 2.5e-05 1
UNIPROTKB|B4DEH8 - symbol:PABPN1 "cDNA FLJ57714, highly s... 114 2.6e-05 1
DICTYBASE|DDB_G0293558 - symbol:pabpc1A "polyadenylate bi... 127 2.7e-05 1
DICTYBASE|DDB_G0293252 - symbol:DDB_G0293252 "putative RN... 128 2.8e-05 1
UNIPROTKB|F1NA97 - symbol:LOC426301 "Uncharacterized prot... 124 3.0e-05 1
POMBASE|SPAC140.02 - symbol:gar2 "nucleolar protein requi... 126 3.0e-05 1
UNIPROTKB|Q5JQF3 - symbol:PABPC5 "Polyadenylate-binding p... 119 3.1e-05 1
ZFIN|ZDB-GENE-050327-97 - symbol:rbm39b "RNA binding moti... 126 3.4e-05 1
UNIPROTKB|E9PQ56 - symbol:PUF60 "Poly(U)-binding-splicing... 122 4.0e-05 1
TAIR|locus:2142519 - symbol:AT5G10350 species:3702 "Arabi... 118 4.1e-05 1
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 126 4.2e-05 1
UNIPROTKB|J9P4I7 - symbol:PUF60 "Uncharacterized protein"... 125 4.6e-05 1
UNIPROTKB|G3V4T2 - symbol:PABPN1 "Polyadenylate-binding p... 114 4.6e-05 1
FB|FBgn0031883 - symbol:CG11266 species:7227 "Drosophila ... 125 5.0e-05 1
UNIPROTKB|F1P1V2 - symbol:LOC426301 "Uncharacterized prot... 124 5.4e-05 1
UNIPROTKB|F1N238 - symbol:PUF60 "Poly(U)-binding-splicing... 124 5.5e-05 1
UNIPROTKB|Q2HJG2 - symbol:PUF60 "Poly(U)-binding-splicing... 124 5.5e-05 1
ZFIN|ZDB-GENE-000501-1 - symbol:celf1 "cugbp, Elav-like f... 124 5.6e-05 1
WB|WBGene00007396 - symbol:tiar-3 species:6239 "Caenorhab... 123 5.6e-05 1
UNIPROTKB|Q9UHX1 - symbol:PUF60 "Poly(U)-binding-splicing... 124 5.9e-05 1
MGI|MGI:1915209 - symbol:Puf60 "poly-U binding splicing f... 124 6.0e-05 1
RGD|621674 - symbol:Puf60 "poly-U binding splicing factor... 124 6.0e-05 1
UNIPROTKB|I3LVL9 - symbol:PUF60 "Uncharacterized protein"... 122 6.1e-05 1
ZFIN|ZDB-GENE-040426-2852 - symbol:rbm39a "RNA binding mo... 123 7.1e-05 1
FB|FBgn0085383 - symbol:CG34354 species:7227 "Drosophila ... 123 7.1e-05 1
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 100 7.2e-05 1
RGD|1311646 - symbol:Sart3 "squamous cell carcinoma antig... 125 9.3e-05 1
DICTYBASE|DDB_G0289337 - symbol:DDB_G0289337 species:4468... 127 9.5e-05 1
UNIPROTKB|E2RA48 - symbol:PUF60 "Uncharacterized protein"... 122 9.6e-05 1
UNIPROTKB|Q6TY21 - symbol:Pabpn1l-b "Embryonic polyadenyl... 115 9.6e-05 1
GENEDB_PFALCIPARUM|PFL1170w - symbol:PFL1170w "polyadenyl... 124 0.00011 1
UNIPROTKB|Q8I5H4 - symbol:PFL1170w "Polyadenylate-binding... 124 0.00011 1
TAIR|locus:2831834 - symbol:AT5G03580 species:3702 "Arabi... 98 0.00012 1
MGI|MGI:1100851 - symbol:Elavl1 "ELAV (embryonic lethal, ... 118 0.00012 1
RGD|1308649 - symbol:Elavl1 "ELAV (embryonic lethal, abno... 118 0.00012 1
MGI|MGI:1858230 - symbol:Sart3 "squamous cell carcinoma a... 124 0.00012 1
UNIPROTKB|Q96DU9 - symbol:PABPC5 "Polyadenylate-binding p... 119 0.00012 1
ZFIN|ZDB-GENE-030131-2891 - symbol:puf60a "poly-U binding... 121 0.00012 1
DICTYBASE|DDB_G0283687 - symbol:DDB_G0283687 "RNA-binding... 122 0.00014 1
TAIR|locus:2065190 - symbol:AT2G47310 species:3702 "Arabi... 120 0.00015 1
WB|WBGene00011059 - symbol:R06C1.4 species:6239 "Caenorha... 97 0.00015 1
UNIPROTKB|Q5U259 - symbol:elavl1-b "ELAV-like protein 1-B... 117 0.00016 1
UNIPROTKB|Q6GLB5 - symbol:elavl1 "ELAV-like protein 1" sp... 117 0.00016 1
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 121 0.00016 1
UNIPROTKB|E1C240 - symbol:ELAVL2 "Uncharacterized protein... 118 0.00016 1
ASPGD|ASPL0000055210 - symbol:AN0917 species:162425 "Emer... 120 0.00017 1
MGI|MGI:1859158 - symbol:Pabpn1 "poly(A) binding protein,... 116 0.00017 1
TAIR|locus:2027372 - symbol:RBP45B species:3702 "Arabidop... 118 0.00018 1
GENEDB_PFALCIPARUM|MAL13P1.120 - symbol:MAL13P1.120 "spli... 122 0.00018 1
UNIPROTKB|Q8IE99 - symbol:MAL13P1.120 "Splicing factor, p... 122 0.00018 1
UNIPROTKB|Q01085 - symbol:TIAL1 "Nucleolysin TIAR" specie... 117 0.00020 1
SGD|S000005846 - symbol:HSH49 "U2-snRNP associated splici... 112 0.00020 1
UNIPROTKB|F2Z4H8 - symbol:TIAL1 "Uncharacterized protein"... 117 0.00021 1
UNIPROTKB|Q96B58 - symbol:TIA1 "TIA1 cytotoxic granule-as... 112 0.00021 1
POMBASE|SPAC57A7.04c - symbol:pabp "mRNA export shuttling... 120 0.00021 1
GENEDB_PFALCIPARUM|PFF0300w - symbol:PFF0300w "RNA-bindin... 118 0.00023 2
UNIPROTKB|F1MTN4 - symbol:PABPN1 "Polyadenylate-binding p... 114 0.00024 1
RGD|1559517 - symbol:Pabpc4l "poly(A) binding protein, cy... 116 0.00025 1
UNIPROTKB|E2R8F6 - symbol:CELF1 "Uncharacterized protein"... 118 0.00025 1
UNIPROTKB|G5EA30 - symbol:CELF1 "CUG triplet repeat, RNA ... 118 0.00026 1
WARNING: Descriptions of 95 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2139242 [details] [associations]
symbol:CID12 "CTC-interacting domain 12" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 InterPro:IPR009818 Pfam:PF07145 EMBL:AL161517
EMBL:AL049523 EMBL:AF118222 EMBL:AF109721 EMBL:AY039599
EMBL:AY078011 EMBL:AY086286 IPI:IPI00524673 PIR:T04196
RefSeq:NP_192799.1 UniGene:At.24082 ProteinModelPortal:Q9S7N9
SMR:Q9S7N9 STRING:Q9S7N9 PRIDE:Q9S7N9 EnsemblPlants:AT4G10610.1
GeneID:826653 KEGG:ath:AT4G10610 TAIR:At4g10610 InParanoid:Q9S7N9
OMA:DMRELHE PhylomeDB:Q9S7N9 ProtClustDB:CLSN2682834
ArrayExpress:Q9S7N9 Genevestigator:Q9S7N9 Uniprot:Q9S7N9
Length = 336
Score = 905 (323.6 bits), Expect = 9.3e-91, P = 9.3e-91
Identities = 176/217 (81%), Positives = 195/217 (89%)
Query: 50 AFQKRNGYSQ-GKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDC 108
+F+++ + Q GKRRMN RTS AQ++E+IRRTVYVSDIDQQVTEEQLA LF+ GQVVDC
Sbjct: 120 SFRRKKSFGQQGKRRMNPRTSLAQREEIIRRTVYVSDIDQQVTEEQLAGLFIGFGQVVDC 179
Query: 109 RICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSE 168
RICGDPNSVLRFAF+EFTDE GAR AL+L+GTMLGFYPV+V+PSKTAIAPVNPTFLPR+E
Sbjct: 180 RICGDPNSVLRFAFIEFTDEVGARTALNLSGTMLGFYPVKVMPSKTAIAPVNPTFLPRTE 239
Query: 169 DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAES 228
DEREMC+RTIYCTNIDKK+TQ DIKLFFESVCGEV RLRLLGDY H TRI FVEF MAES
Sbjct: 240 DEREMCARTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRLLGDYHHPTRIGFVEFVMAES 299
Query: 229 AIAALNCSGAVLGSLPIRVSPSKTPVRPRA-PRPPLH 264
AIAALNCSG +LGSLPIRVSPSKTPVR RA PR +H
Sbjct: 300 AIAALNCSGVLLGSLPIRVSPSKTPVRSRAIPRHQMH 336
>TAIR|locus:2035629 [details] [associations]
symbol:CID11 "CTC-interacting domain 11" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0046482 "para-aminobenzoic acid metabolic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
IPI:IPI00657306 RefSeq:NP_001031131.1 UniGene:At.27546
ProteinModelPortal:F4IEC7 SMR:F4IEC7 PRIDE:F4IEC7
EnsemblPlants:AT1G32790.2 GeneID:840173 KEGG:ath:AT1G32790
OMA:NARTSMA PhylomeDB:F4IEC7 Uniprot:F4IEC7
Length = 406
Score = 886 (316.9 bits), Expect = 9.6e-89, P = 9.6e-89
Identities = 167/201 (83%), Positives = 185/201 (92%)
Query: 48 NTAFQKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVD 107
N F+++ + QGKRRMN RTS AQ+++VIRRTVYVSD+DQQVTEEQLA LF++CGQVVD
Sbjct: 142 NGGFRRKKSFGQGKRRMNARTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQVVD 201
Query: 108 CRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS 167
CRICGDPNSVLRFAF+EFTDEEGA AL+L+GTMLGFYPV+VLPSKTAIAPVNPTFLPR+
Sbjct: 202 CRICGDPNSVLRFAFIEFTDEEGAMTALNLSGTMLGFYPVKVLPSKTAIAPVNPTFLPRT 261
Query: 168 EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAE 227
EDEREMC+RTIYCTNIDKKVTQ D+K+FFES CGEV RLRLLGDYQHSTRIAFVEF MAE
Sbjct: 262 EDEREMCARTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTRIAFVEFVMAE 321
Query: 228 SAIAALNCSGAVLGSLPIRVS 248
SAIAALNCSG VLGSLPIR S
Sbjct: 322 SAIAALNCSGVVLGSLPIRSS 342
Score = 176 (67.0 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 38/91 (41%), Positives = 56/91 (61%)
Query: 170 ERE-MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAES 228
+RE + RT+Y +++D++VT+ + F S CG+V R+ GD R AF+EF E
Sbjct: 166 QREDVIRRTVYVSDLDQQVTEEQLAGLFVS-CGQVVDCRICGDPNSVLRFAFIEFTDEEG 224
Query: 229 AIAALNCSGAVLGSLPIRVSPSKTPVRPRAP 259
A+ ALN SG +LG P++V PSKT + P P
Sbjct: 225 AMTALNLSGTMLGFYPVKVLPSKTAIAPVNP 255
>TAIR|locus:2082961 [details] [associations]
symbol:CID10 "CTC-interacting domain 10" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GO:GO:0000166 EMBL:AC012329
EMBL:AL132956 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818
Pfam:PF07145 EMBL:AK317338 IPI:IPI00545615 PIR:T45844
RefSeq:NP_001030833.1 RefSeq:NP_190508.1 UniGene:At.738
ProteinModelPortal:Q9SG10 SMR:Q9SG10 PRIDE:Q9SG10
EnsemblPlants:AT3G49390.1 EnsemblPlants:AT3G49390.2 GeneID:824101
KEGG:ath:AT3G49390 TAIR:At3g49390 InParanoid:Q9SG10 OMA:ETDDRIN
PhylomeDB:Q9SG10 ProtClustDB:CLSN2684239 Genevestigator:Q9SG10
Uniprot:Q9SG10
Length = 353
Score = 886 (316.9 bits), Expect = 9.6e-89, P = 9.6e-89
Identities = 168/209 (80%), Positives = 190/209 (90%)
Query: 52 QKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRIC 111
++R + QGKRRMN RTS AQ+D+VIRRTVYVSDIDQQVTEE LA +F+ CGQVVDCR+C
Sbjct: 142 RRRRSFGQGKRRMNKRTSLAQKDDVIRRTVYVSDIDQQVTEENLAGVFINCGQVVDCRVC 201
Query: 112 GDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDER 171
GDPNSVLRFAF+EFT+EEGARAALS++GT+LGFYP++VLPSKTAIAPVNPTFLPRSEDER
Sbjct: 202 GDPNSVLRFAFIEFTNEEGARAALSMSGTVLGFYPLKVLPSKTAIAPVNPTFLPRSEDER 261
Query: 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIA 231
EMC RT+YCTNIDK++TQ D+K FFE +CGEV RLRL GDY H TRIAFVEFAMAESAIA
Sbjct: 262 EMCVRTVYCTNIDKRITQIDLKGFFEMLCGEVHRLRL-GDYHHQTRIAFVEFAMAESAIA 320
Query: 232 ALNCSGAVLGSLPIRVSPSKTPVRPRAPR 260
AL+CSG VLG+LPIRVSPSKTPVRP PR
Sbjct: 321 ALHCSGIVLGALPIRVSPSKTPVRPHFPR 349
>TAIR|locus:2091657 [details] [associations]
symbol:CID9 "CTC-interacting domain 9" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
EMBL:AB028617 HSSP:P11940 HOGENOM:HOG000006309 IPI:IPI00526270
RefSeq:NP_188063.1 UniGene:At.53311 ProteinModelPortal:Q9LRR6
SMR:Q9LRR6 EnsemblPlants:AT3G14450.1 GeneID:820668
KEGG:ath:AT3G14450 TAIR:At3g14450 eggNOG:NOG243629
InParanoid:Q9LRR6 OMA:PRVNRVG PhylomeDB:Q9LRR6
ProtClustDB:CLSN2915572 Genevestigator:Q9LRR6 Uniprot:Q9LRR6
Length = 327
Score = 868 (310.6 bits), Expect = 7.7e-87, P = 7.7e-87
Identities = 166/211 (78%), Positives = 184/211 (87%)
Query: 52 QKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRIC 111
+KR YSQG+RR+ R S AQ+++ IRRTVYVSDIDQ VTEE LA LF CGQVVDCRIC
Sbjct: 114 RKRRNYSQGRRRLTGRISKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSNCGQVVDCRIC 173
Query: 112 GDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDER 171
GDP+SVLRFAFVEF D++GA ALSL GTMLGFYPVRVLPSKTAI PVNPTFLPRSEDER
Sbjct: 174 GDPHSVLRFAFVEFADDQGAHEALSLGGTMLGFYPVRVLPSKTAILPVNPTFLPRSEDER 233
Query: 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIA 231
EMC+RTIYCTNIDKKV+Q D++ FFES CGEV RLRLLGD HSTRIAFVEFA+A+SA++
Sbjct: 234 EMCTRTIYCTNIDKKVSQADVRNFFESACGEVTRLRLLGDQLHSTRIAFVEFALADSALS 293
Query: 232 ALNCSGAVLGSLPIRVSPSKTPVRPRAPRPP 262
ALNCSG V+GS PIRVSPSKTPVRPR RPP
Sbjct: 294 ALNCSGMVVGSQPIRVSPSKTPVRPRITRPP 324
>TAIR|locus:2024842 [details] [associations]
symbol:CID8 "CTC-interacting domain 8" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0005515
"protein binding" evidence=IPI] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
EMBL:AC024260 HSSP:P11940 EMBL:BT014885 IPI:IPI00524059 PIR:F96576
RefSeq:NP_175769.1 UniGene:At.37370 ProteinModelPortal:Q9C8M0
SMR:Q9C8M0 STRING:Q9C8M0 EnsemblPlants:AT1G53650.1 GeneID:841802
KEGG:ath:AT1G53650 TAIR:At1g53650 HOGENOM:HOG000006309
InParanoid:Q9C8M0 OMA:ITEMATD PhylomeDB:Q9C8M0
ProtClustDB:CLSN2682126 Genevestigator:Q9C8M0 Uniprot:Q9C8M0
Length = 314
Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
Identities = 164/212 (77%), Positives = 184/212 (86%)
Query: 52 QKRNGYSQGKR-RMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRI 110
++RN Y+QG+R R+ R S AQ+++ IRRTVYVSDIDQ VTEE LA LF +CGQVVDCRI
Sbjct: 100 RRRNNYNQGRRVRLPGRASKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRI 159
Query: 111 CGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDE 170
CGDPNSVLRFAFVEF+D++GAR+ALSL GTM+G+YPVRVLPSKTAI PVNPTFLPRSEDE
Sbjct: 160 CGDPNSVLRFAFVEFSDDQGARSALSLGGTMIGYYPVRVLPSKTAILPVNPTFLPRSEDE 219
Query: 171 REMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAI 230
REMCSRTIYCTN+DK T+ D+ FF+S CGEV RLRLLGD HSTRIAFVEFAMAESA+
Sbjct: 220 REMCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVHSTRIAFVEFAMAESAV 279
Query: 231 AALNCSGAVLGSLPIRVSPSKTPVRPRAPRPP 262
AALNCSG VLGS PIRVSPSKTPVR R R P
Sbjct: 280 AALNCSGIVLGSQPIRVSPSKTPVRSRITRSP 311
>TAIR|locus:2184022 [details] [associations]
symbol:CID13 "CTC-interacting domain 13" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
EMBL:AB025641 HOGENOM:HOG000006309 IPI:IPI00536712
RefSeq:NP_197832.1 UniGene:At.54975 ProteinModelPortal:Q9FGE6
SMR:Q9FGE6 EnsemblPlants:AT5G24440.1 GeneID:832515
KEGG:ath:AT5G24440 TAIR:At5g24440 eggNOG:NOG303272
InParanoid:Q9FGE6 OMA:FKLAESA PhylomeDB:Q9FGE6
ProtClustDB:CLSN2916288 Genevestigator:Q9FGE6 Uniprot:Q9FGE6
Length = 320
Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
Identities = 138/206 (66%), Positives = 173/206 (83%)
Query: 50 AFQKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCR 109
A +RN + +G+ + +T+ Q +++I+RTVYVSDID QVTEEQLA+LFL+CGQVVDCR
Sbjct: 109 ATMRRN-FGKGRPWITKKTNLVQNEDMIKRTVYVSDIDNQVTEEQLASLFLSCGQVVDCR 167
Query: 110 ICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSED 169
+CGD S+LRFAF+EFTD EGAR+AL +GTM G +P+RV SKTAIAPVNP+FLP+S+D
Sbjct: 168 MCGDYKSILRFAFIEFTDAEGARSALRKSGTMFGSHPIRVFMSKTAIAPVNPSFLPQSKD 227
Query: 170 EREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESA 229
E E C +T+YCTNIDK+VT+ +++ FF++VCGEV LRLLGD+ H TRIAFVEF +AESA
Sbjct: 228 ELEKCGKTVYCTNIDKEVTKMELENFFKTVCGEVHHLRLLGDFYHQTRIAFVEFKLAESA 287
Query: 230 IAALNCSGAVLGSLPIRVSPSKTPVR 255
I+ALNCSG VLG LPIRVSPSKTPVR
Sbjct: 288 ISALNCSGVVLGELPIRVSPSKTPVR 313
Score = 184 (69.8 bits), Expect = 6.9e-13, P = 6.9e-13
Identities = 44/98 (44%), Positives = 59/98 (60%)
Query: 162 TFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFV 221
T L ++ED M RT+Y ++ID +VT+ + F S CG+V R+ GDY+ R AF+
Sbjct: 126 TNLVQNED---MIKRTVYVSDIDNQVTEEQLASLFLS-CGQVVDCRMCGDYKSILRFAFI 181
Query: 222 EFAMAESAIAALNCSGAVLGSLPIRVSPSKTPVRPRAP 259
EF AE A +AL SG + GS PIRV SKT + P P
Sbjct: 182 EFTDAEGARSALRKSGTMFGSHPIRVFMSKTAIAPVNP 219
>UNIPROTKB|J9P0H2 [details] [associations]
symbol:SREK1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104035 KO:K13165 CTD:140890 OMA:EKEQDKD
EMBL:AAEX03001478 RefSeq:XP_544361.3 Ensembl:ENSCAFT00000044884
GeneID:487233 KEGG:cfa:487233 Uniprot:J9P0H2
Length = 626
Score = 153 (58.9 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 38/95 (40%), Positives = 51/95 (53%)
Query: 74 DEVIRRTVYVSDIDQQVTE-EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 132
DE IRRTVYV +++ Q T +QL F G+V R+ GD RFAFVEF D+
Sbjct: 178 DE-IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVP 236
Query: 133 AALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS 167
AL+ G M G P+++ S AI P P++
Sbjct: 237 RALAFNGVMFGDRPLKINHSNNAIVKP-PEMTPQA 270
Score = 141 (54.7 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 41/132 (31%), Positives = 66/132 (50%)
Query: 135 LSLAGTMLGFYPVRVL-PSKTAIAPV-NPTFLPRSEDER-EMCSRTIYCTNIDKKVTQGD 191
L ++ + LG P L P+ + + P + + + + RT+Y N++ + T D
Sbjct: 138 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTAD 197
Query: 192 IKL-FFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPS 250
L FF+ V GEV+ +R+ GD TR AFVEFA S AL +G + G P++++ S
Sbjct: 198 QLLEFFKQV-GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHS 256
Query: 251 KTP-VRPRAPRP 261
V+P P
Sbjct: 257 NNAIVKPPEMTP 268
Score = 77 (32.2 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 81 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFA----FVEFTDEEGARAALS 136
+ V+++ VT EQ+ TLF G++ + R+ N+ L F+ +V+F D A
Sbjct: 21 IQVTNLSSAVTSEQMRTLFSFLGEIEELRLYPPDNAPLAFSSKVCYVKFRDPSSVGVAQH 80
Query: 137 LAGTM 141
L T+
Sbjct: 81 LTNTV 85
>UNIPROTKB|F1NA16 [details] [associations]
symbol:Gga.54187 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104035
OMA:EKEQDKD EMBL:AADN02045988 EMBL:AADN02045989 EMBL:AADN02045990
EMBL:AADN02045991 EMBL:AADN02045992 EMBL:AADN02045993
IPI:IPI00583646 Ensembl:ENSGALT00000023839 Uniprot:F1NA16
Length = 475
Score = 141 (54.7 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 33/76 (43%), Positives = 43/76 (56%)
Query: 74 DEVIRRTVYVSDIDQQVTE-EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 132
DE IRRTVYV +++ Q T +QL F G+V R+ GD RFAFVEF D+
Sbjct: 164 DE-IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVP 222
Query: 133 AALSLAGTMLGFYPVR 148
AL+ G M G P++
Sbjct: 223 RALAFNGVMFGDRPLK 238
Score = 140 (54.3 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
Identities = 40/112 (35%), Positives = 59/112 (52%)
Query: 139 GTMLGFYPVRVL-PSKTAIAPV-NPTFLPRSEDER-EMCSRTIYCTNIDKKVTQGDIKL- 194
GT LG P L P+ TA+ + P + + + + RT+Y N++ + T D L
Sbjct: 129 GT-LGAIPAAALDPNITALGEIPQPPIMGNVDPSKIDEIRRTVYVGNLNSQTTTADQLLE 187
Query: 195 FFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIR 246
FF+ V GEV+ +R+ GD TR AFVEFA S AL +G + G P++
Sbjct: 188 FFKQV-GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 238
Score = 66 (28.3 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
Identities = 17/65 (26%), Positives = 32/65 (49%)
Query: 81 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFA----FVEFTDEEGARAALS 136
+ V+++ VT EQ+ TLF G + + R+ N+ L F+ +++F + A
Sbjct: 7 IQVTNLSLAVTSEQMRTLFGFLGDIEELRLYPPDNAPLAFSSKVCYIKFREASSVGVAQH 66
Query: 137 LAGTM 141
L T+
Sbjct: 67 LTNTV 71
>TAIR|locus:2100696 [details] [associations]
symbol:PHIP1 "phragmoplastin interacting protein 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005794
"Golgi apparatus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IPI] [GO:0009920
"cell plate formation involved in plant-type cell wall biogenesis"
evidence=IDA] [GO:0019898 "extrinsic to membrane" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002686 GO:GO:0000166
GO:GO:0046872 GO:GO:0019898 GO:GO:0008270 GO:GO:0003729
Gene3D:3.30.70.330 EMBL:AL132954 Gene3D:4.10.60.10 SUPFAM:SSF57756
HSSP:P09651 GO:GO:0009920 IPI:IPI00527178 PIR:T47673
RefSeq:NP_191094.1 UniGene:At.28318 ProteinModelPortal:Q9M3B8
SMR:Q9M3B8 STRING:Q9M3B8 PRIDE:Q9M3B8 EnsemblPlants:AT3G55340.1
GeneID:824700 KEGG:ath:AT3G55340 TAIR:At3g55340 InParanoid:Q9M3B8
OMA:KKRRTCY PhylomeDB:Q9M3B8 ProtClustDB:CLSN2685284
Genevestigator:Q9M3B8 Uniprot:Q9M3B8
Length = 597
Score = 155 (59.6 bits), Expect = 8.4e-09, Sum P(2) = 8.4e-09
Identities = 51/191 (26%), Positives = 91/191 (47%)
Query: 68 TSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQV--VDCRICGDPNSVLRFAFVEF 125
T N ++D V+ +YV I Q TE+++ + F +CG + VDC++ + + AF+ F
Sbjct: 150 TDNKEEDGVVPNKLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITF 209
Query: 126 TDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDER----EMCS--RTIY 179
E+GA+ AL+ +G R L + + P+ +PR + EM +Y
Sbjct: 210 DTEDGAKRALAFDRAAMGD---RYLTIQQYVKTTTPS-IPRRKTSSGFAPEMVDGYNRVY 265
Query: 180 CTNIDKKVTQGDI-KLFFESVCGEVQ--RLRLLGDYQHSTRIAFVEFAMAESAIAALNCS 236
N+ T+ DI KLF + V V+ + + G+++ A V+F + S AL
Sbjct: 266 IGNLAWDTTERDIRKLFSDCVINSVRLGKNKETGEFKG---YAHVDFKDSVSVAIALKLD 322
Query: 237 GAVLGSLPIRV 247
V+ P+++
Sbjct: 323 QQVICGRPVKI 333
Score = 41 (19.5 bits), Expect = 8.4e-09, Sum P(2) = 8.4e-09
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 58 SQGKRRMNCRTSNAQQDEV 76
S+ ++R NC T + DE+
Sbjct: 48 SKREKRRNCETFAREDDEI 66
Score = 38 (18.4 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 52 QKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDID 87
+K+N + KR++N A++ V + V V +I+
Sbjct: 113 KKKNKKKKKKRKVNKTPKKAEEGNVEEK-VKVEEIE 147
>ZFIN|ZDB-GENE-040801-132 [details] [associations]
symbol:srek1 "splicing regulatory
glutamine/lysine-rich protein 1" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040801-132 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104035
eggNOG:NOG277302 OrthoDB:EOG4K3KWS HOGENOM:HOG000121772
EMBL:BX950207 EMBL:CU207241 EMBL:CU467961 IPI:IPI00497438
UniGene:Dr.81675 Ensembl:ENSDART00000134937 HOVERGEN:HBG097523
InParanoid:A2BIN4 Uniprot:A2BIN4
Length = 515
Score = 153 (58.9 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 38/95 (40%), Positives = 51/95 (53%)
Query: 74 DEVIRRTVYVSDIDQQ-VTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 132
DE IRRTVYV +++ Q T +QL F G V R+ GD RFAFVEF D++
Sbjct: 167 DE-IRRTVYVGNLNSQSTTADQLLKFFKQVGDVKFVRMAGDETQPTRFAFVEFADQDSVA 225
Query: 133 AALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS 167
AL+ G M G P+++ S AI P P++
Sbjct: 226 RALTYNGVMFGDRPLKINHSNNAIVKP-PELTPQA 259
Score = 140 (54.3 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 39/112 (34%), Positives = 59/112 (52%)
Query: 147 VRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKL-FFESVCGEVQR 205
V L + +A P+ P DE RT+Y N++ + T D L FF+ V G+V+
Sbjct: 145 VATLSAVSAQPPLMGNVDPSKVDE---IRRTVYVGNLNSQSTTADQLLKFFKQV-GDVKF 200
Query: 206 LRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKTP-VRP 256
+R+ GD TR AFVEFA +S AL +G + G P++++ S V+P
Sbjct: 201 VRMAGDETQPTRFAFVEFADQDSVARALTYNGVMFGDRPLKINHSNNAIVKP 252
Score = 55 (24.4 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 13/65 (20%), Positives = 32/65 (49%)
Query: 81 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFA----FVEFTDEEGARAALS 136
+ ++++ V+ +Q+ TLF G + + R+ N+ L F+ ++++ + A
Sbjct: 10 IQITNLSAAVSSDQMRTLFGFLGDIDELRLYPPDNAPLSFSSKVCYIKYREPSSVGVAQH 69
Query: 137 LAGTM 141
L T+
Sbjct: 70 LTNTV 74
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 154 (59.3 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 56/195 (28%), Positives = 96/195 (49%)
Query: 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARA 133
DE +T+YV ++D V+E+ L LF T G V C+I +P + +AF+E+++ + A
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGND-PYAFIEYSNYQAATT 60
Query: 134 ALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIK 193
AL+ L + + + A +P N P+++ I+ ++ ++ ++
Sbjct: 61 ALTAMNKRL--FLEKEIKVNWATSPGNQ---PKTDISSH---HHIFVGDLSPEIETETLR 112
Query: 194 LFFESVCGEVQRLRLLGDYQHSTR---IAFVEF---AMAESAIAALNCSGAVLGSLPIRV 247
F GE+ R++ D H+ + AFV F A AE+AI A+N G +GS IR
Sbjct: 113 EAFAPF-GEISNCRIVRD-PHTMKSKGYAFVSFVKKAEAENAIQAMN--GQWIGSRSIRT 168
Query: 248 SPSKTPVRPRAPRPP 262
+ S + P PR P
Sbjct: 169 NWSTRKLPP--PREP 181
>RGD|621696 [details] [associations]
symbol:Srek1 "splicing regulatory glutamine/lysine-rich protein
1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 RGD:621696 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 KO:K13165 CTD:140890
HOVERGEN:HBG079174 OrthoDB:EOG4K3KWS EMBL:AF234765 IPI:IPI00202759
RefSeq:NP_064477.1 UniGene:Rn.161755 ProteinModelPortal:Q9JKL7
STRING:Q9JKL7 PRIDE:Q9JKL7 GeneID:56763 KEGG:rno:56763
UCSC:RGD:621696 eggNOG:NOG310672 InParanoid:Q9JKL7 NextBio:611146
Genevestigator:Q9JKL7 GermOnline:ENSRNOG00000032735 Uniprot:Q9JKL7
Length = 494
Score = 153 (58.9 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 38/95 (40%), Positives = 51/95 (53%)
Query: 74 DEVIRRTVYVSDIDQQVTE-EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 132
DE IRRTVYV +++ Q T +QL F G+V R+ GD RFAFVEF D+
Sbjct: 65 DE-IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVP 123
Query: 133 AALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS 167
AL+ G M G P+++ S AI P P++
Sbjct: 124 RALAFNGVMFGDRPLKINHSNNAIVKP-PEMTPQA 157
Score = 153 (58.9 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 44/136 (32%), Positives = 71/136 (52%)
Query: 131 ARAALSLAGTMLGFYPVRVL-PSKTAIAPV-NPTFLPRSEDER-EMCSRTIYCTNIDKKV 187
A ++L ++ + LG P L P+ TA+ + P + + + + RT+Y N++ +
Sbjct: 21 AVSSLGVSLSSLGAIPAAALDPNITALGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQT 80
Query: 188 TQGDIKL-FFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIR 246
T D L FF+ V GEV+ +R+ GD TR AFVEFA S AL +G + G P++
Sbjct: 81 TTADQLLEFFKQV-GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 139
Query: 247 VSPSKTP-VRPRAPRP 261
++ S V+P P
Sbjct: 140 INHSNNAIVKPPEMTP 155
>UNIPROTKB|Q9JKL7 [details] [associations]
symbol:Srek1 "Splicing regulatory glutamine/lysine-rich
protein 1" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:621696 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003676 KO:K13165 CTD:140890 HOVERGEN:HBG079174
OrthoDB:EOG4K3KWS EMBL:AF234765 IPI:IPI00202759 RefSeq:NP_064477.1
UniGene:Rn.161755 ProteinModelPortal:Q9JKL7 STRING:Q9JKL7
PRIDE:Q9JKL7 GeneID:56763 KEGG:rno:56763 UCSC:RGD:621696
eggNOG:NOG310672 InParanoid:Q9JKL7 NextBio:611146
Genevestigator:Q9JKL7 GermOnline:ENSRNOG00000032735 Uniprot:Q9JKL7
Length = 494
Score = 153 (58.9 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 38/95 (40%), Positives = 51/95 (53%)
Query: 74 DEVIRRTVYVSDIDQQVTE-EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 132
DE IRRTVYV +++ Q T +QL F G+V R+ GD RFAFVEF D+
Sbjct: 65 DE-IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVP 123
Query: 133 AALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS 167
AL+ G M G P+++ S AI P P++
Sbjct: 124 RALAFNGVMFGDRPLKINHSNNAIVKP-PEMTPQA 157
Score = 153 (58.9 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 44/136 (32%), Positives = 71/136 (52%)
Query: 131 ARAALSLAGTMLGFYPVRVL-PSKTAIAPV-NPTFLPRSEDER-EMCSRTIYCTNIDKKV 187
A ++L ++ + LG P L P+ TA+ + P + + + + RT+Y N++ +
Sbjct: 21 AVSSLGVSLSSLGAIPAAALDPNITALGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQT 80
Query: 188 TQGDIKL-FFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIR 246
T D L FF+ V GEV+ +R+ GD TR AFVEFA S AL +G + G P++
Sbjct: 81 TTADQLLEFFKQV-GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 139
Query: 247 VSPSKTP-VRPRAPRP 261
++ S V+P P
Sbjct: 140 INHSNNAIVKPPEMTP 155
>MGI|MGI:2145245 [details] [associations]
symbol:Srek1 "splicing regulatory glutamine/lysine-rich
protein 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 MGI:MGI:2145245 GO:GO:0005739
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 GeneTree:ENSGT00700000104035
eggNOG:NOG277302 KO:K13165 CTD:140890 HOVERGEN:HBG079174
OMA:EKEQDKD OrthoDB:EOG4K3KWS EMBL:AK033354 EMBL:AK037115
EMBL:AK039311 EMBL:AK044086 EMBL:AK052265 EMBL:BC070460
IPI:IPI00227738 IPI:IPI00379480 RefSeq:NP_766180.1
UniGene:Mm.458176 ProteinModelPortal:Q8BZX4 SMR:Q8BZX4
STRING:Q8BZX4 PhosphoSite:Q8BZX4 PaxDb:Q8BZX4 PRIDE:Q8BZX4
Ensembl:ENSMUST00000074616 GeneID:218543 KEGG:mmu:218543
UCSC:uc007rsh.1 InParanoid:Q8BZX4 NextBio:376337 Bgee:Q8BZX4
CleanEx:MM_SFRS12 Genevestigator:Q8BZX4
GermOnline:ENSMUSG00000032621 Uniprot:Q8BZX4
Length = 494
Score = 153 (58.9 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 38/95 (40%), Positives = 51/95 (53%)
Query: 74 DEVIRRTVYVSDIDQQVTE-EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 132
DE IRRTVYV +++ Q T +QL F G+V R+ GD RFAFVEF D+
Sbjct: 65 DE-IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVP 123
Query: 133 AALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS 167
AL+ G M G P+++ S AI P P++
Sbjct: 124 RALAFNGVMFGDRPLKINHSNNAIVKP-PEMTPQA 157
Score = 149 (57.5 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 43/136 (31%), Positives = 70/136 (51%)
Query: 131 ARAALSLAGTMLGFYPVRVL-PSKTAIAPV-NPTFLPRSEDER-EMCSRTIYCTNIDKKV 187
A ++L ++ + LG P L P+ T + + P + + + + RT+Y N++ +
Sbjct: 21 AVSSLGVSLSSLGAIPAAALDPNITTLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQT 80
Query: 188 TQGDIKL-FFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIR 246
T D L FF+ V GEV+ +R+ GD TR AFVEFA S AL +G + G P++
Sbjct: 81 TTADQLLEFFKQV-GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLK 139
Query: 247 VSPSKTP-VRPRAPRP 261
++ S V+P P
Sbjct: 140 INHSNNAIVKPPEMTP 155
>UNIPROTKB|Q8WXA9 [details] [associations]
symbol:SREK1 "Splicing regulatory glutamine/lysine-rich
protein 1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 eggNOG:NOG277302 KO:K13165
EMBL:AF459094 EMBL:BC047322 EMBL:BC067770 EMBL:BC112343
IPI:IPI00103497 IPI:IPI00375462 RefSeq:NP_001070667.1
RefSeq:NP_001257421.1 RefSeq:NP_631907.1 UniGene:Hs.49367
UniGene:Hs.519347 ProteinModelPortal:Q8WXA9 SMR:Q8WXA9
IntAct:Q8WXA9 STRING:Q8WXA9 PhosphoSite:Q8WXA9 DMDM:37537968
PaxDb:Q8WXA9 PeptideAtlas:Q8WXA9 PRIDE:Q8WXA9
Ensembl:ENST00000334121 Ensembl:ENST00000380918 GeneID:140890
KEGG:hsa:140890 UCSC:uc003jun.3 UCSC:uc003juo.3 CTD:140890
GeneCards:GC05P065435 HGNC:HGNC:17882 HPA:HPA037674 MIM:609268
neXtProt:NX_Q8WXA9 PharmGKB:PA38255 HOVERGEN:HBG079174
InParanoid:Q8WXA9 OMA:EKEQDKD OrthoDB:EOG4K3KWS ChiTaRS:SREK1
GenomeRNAi:140890 NextBio:84548 ArrayExpress:Q8WXA9 Bgee:Q8WXA9
CleanEx:HS_SFRS12 Genevestigator:Q8WXA9 GermOnline:ENSG00000153914
Uniprot:Q8WXA9
Length = 508
Score = 153 (58.9 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 38/95 (40%), Positives = 51/95 (53%)
Query: 74 DEVIRRTVYVSDIDQQVTE-EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 132
DE IRRTVYV +++ Q T +QL F G+V R+ GD RFAFVEF D+
Sbjct: 62 DE-IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVP 120
Query: 133 AALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS 167
AL+ G M G P+++ S AI P P++
Sbjct: 121 RALAFNGVMFGDRPLKINHSNNAIVKP-PEMTPQA 154
Score = 141 (54.7 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 41/132 (31%), Positives = 66/132 (50%)
Query: 135 LSLAGTMLGFYPVRVL-PSKTAIAPV-NPTFLPRSEDER-EMCSRTIYCTNIDKKVTQGD 191
L ++ + LG P L P+ + + P + + + + RT+Y N++ + T D
Sbjct: 22 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTAD 81
Query: 192 IKL-FFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPS 250
L FF+ V GEV+ +R+ GD TR AFVEFA S AL +G + G P++++ S
Sbjct: 82 QLLEFFKQV-GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHS 140
Query: 251 KTP-VRPRAPRP 261
V+P P
Sbjct: 141 NNAIVKPPEMTP 152
>UNIPROTKB|E2R749 [details] [associations]
symbol:SREK1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104035
EMBL:AAEX03001478 Ensembl:ENSCAFT00000012107 Uniprot:E2R749
Length = 510
Score = 153 (58.9 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 38/95 (40%), Positives = 51/95 (53%)
Query: 74 DEVIRRTVYVSDIDQQVTE-EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 132
DE IRRTVYV +++ Q T +QL F G+V R+ GD RFAFVEF D+
Sbjct: 62 DE-IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVP 120
Query: 133 AALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS 167
AL+ G M G P+++ S AI P P++
Sbjct: 121 RALAFNGVMFGDRPLKINHSNNAIVKP-PEMTPQA 154
Score = 141 (54.7 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 41/132 (31%), Positives = 66/132 (50%)
Query: 135 LSLAGTMLGFYPVRVL-PSKTAIAPV-NPTFLPRSEDER-EMCSRTIYCTNIDKKVTQGD 191
L ++ + LG P L P+ + + P + + + + RT+Y N++ + T D
Sbjct: 22 LGVSLSSLGAIPAAALDPNIATLGEIPQPPLMGNVDPSKIDEIRRTVYVGNLNSQTTTAD 81
Query: 192 IKL-FFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPS 250
L FF+ V GEV+ +R+ GD TR AFVEFA S AL +G + G P++++ S
Sbjct: 82 QLLEFFKQV-GEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHS 140
Query: 251 KTP-VRPRAPRP 261
V+P P
Sbjct: 141 NNAIVKPPEMTP 152
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 154 (59.3 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 51/190 (26%), Positives = 90/190 (47%)
Query: 67 RTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEF 125
+T + +E +Y+ ++D V+E+ L F G++V I D N + R +AFV F
Sbjct: 190 KTDRVKPEEKYTN-LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNF 248
Query: 126 TDEEGAR-AALSLAGTMLG---FYPVRVLPSKTAIAPVNPTFLPRSEDEREMCS-RTIYC 180
+ E AR AA ++ GT G Y R + F + E+++ + IY
Sbjct: 249 DNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYV 308
Query: 181 TNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAALNC-SGA 238
N++ VT+ +++ F S CG + +L+ D + ++ FV F+ E AI A+ G
Sbjct: 309 KNVNVAVTEEELRKHF-SQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQ 367
Query: 239 VLGSLPIRVS 248
+ P+ V+
Sbjct: 368 MFHGKPLYVA 377
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 149 (57.5 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 43/174 (24%), Positives = 81/174 (46%)
Query: 78 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAALS 136
R V+V ++D+ + +QL +F G+V+ C++ D + V + + FV+F + A +
Sbjct: 30 RGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACN 89
Query: 137 LA-GTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLF 195
GT++ + V P F+ R + ++ +Y N+ + T D+K
Sbjct: 90 FHNGTLIRNQHIHVCP-----------FVSRGQWDKSRVFTNVYVKNLVETATDADLKRL 138
Query: 196 FESVCGEVQRLRLLGDYQ-HSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRV 247
F GE+ ++ D + S R FV F AE+A+ A+ +G V+ + V
Sbjct: 139 FGEF-GEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHV 191
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 146 (56.5 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 59/208 (28%), Positives = 99/208 (47%)
Query: 63 RMNCRTSNA--QQDEVIRRTVYVSDIDQQVTEEQLATLFLTC------GQVVDCRICGDP 114
RMN + A ++D+ T++V D+ VT+ L F + +VV RI G
Sbjct: 158 RMNWASLGAGERRDDSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRS 217
Query: 115 NSVLRFAFVEFTDE-EGARAALSLAGTMLGFYPVRVLPS---KTAIAPVNPTFL-PRS-E 168
+ FV+F DE E RA + G + P+R+ P+ K P T+ P++ +
Sbjct: 218 KG---YGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQ 274
Query: 169 DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEF---AM 225
E + + TI+ +D V + ++ F S GE+ ++++ R FV+F A
Sbjct: 275 GESDPNNTTIFVGGLDPTVAEEHLRQVF-SPYGELVHVKIVA----GKRCGFVQFGTRAS 329
Query: 226 AESAIAALNCSGAVLGSLPIRVSPSKTP 253
AE A+++LN G LG IR+S ++P
Sbjct: 330 AEQALSSLN--GTQLGGQSIRLSWGRSP 355
>POMBASE|SPBC1861.04c [details] [associations]
symbol:SPBC1861.04c "RNA-binding protein Prp24
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000244
"assembly of spliceosomal tri-snRNP" evidence=ISO] [GO:0000245
"spliceosomal complex assembly" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005688 "U6 snRNP" evidence=ISO] [GO:0017069
"snRNA binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR003107
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00386 PomBase:SPBC1861.04c GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0000244 GO:GO:0017069 GO:GO:0000245
GO:GO:0005688 OrthoDB:EOG486CNQ InterPro:IPR008669 Pfam:PF05391
eggNOG:NOG321927 OMA:SQAVMKM PIR:T39743 RefSeq:NP_596721.1
HSSP:P49960 ProteinModelPortal:Q9USY2 EnsemblFungi:SPBC1861.04c.1
GeneID:2539617 KEGG:spo:SPBC1861.04c NextBio:20800774
Uniprot:Q9USY2
Length = 1014
Score = 150 (57.9 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 53/173 (30%), Positives = 80/173 (46%)
Query: 81 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICG-DPNSVLRFAFVEFTDEEGARAALSLAG 139
+YV++ E + LF G VVD R N+ RF +V+ + A AL L
Sbjct: 668 LYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQMRKPDEAHNALQLHK 727
Query: 140 TMLGF-YPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFES 198
+L YP++V S P+ T PRS E R +Y TNID KV + D++ FF
Sbjct: 728 KLLEEKYPIQVFISD----PLRRT--PRSGAVYE--GRELYVTNIDFKVNEKDVETFFRD 779
Query: 199 VCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSK 251
G+V+ +R+ + +V + A AL+ +G LG+ + V SK
Sbjct: 780 Y-GQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSAAGKQLGNRVLNVVLSK 831
>FB|FBgn0035016 [details] [associations]
symbol:CG4612 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
NextBio:806022 Uniprot:Q9W158
Length = 307
Score = 142 (55.0 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 42/166 (25%), Positives = 80/166 (48%)
Query: 81 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAALSLAG 139
+Y+ ++++ + + + F G +++C + D + R + FV F EE ARAA+
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 140 TMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCS--RTIYCTNIDKKVTQGDIKLFFE 197
ML + + V F+PR + E+E + + +Y N+ ++ T+ ++ FE
Sbjct: 175 GMLC--------NNQKVHVVK--FIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMFE 224
Query: 198 SVCGEVQRLRLLGDYQ-HSTRIAFVEFAMAESAIAA-LNCSGAVLG 241
G + +L+ D + S R FV + +SA+AA + G LG
Sbjct: 225 PY-GRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLG 269
>TAIR|locus:2086884 [details] [associations]
symbol:NUC-L2 "nucleolin like 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006364 EMBL:AP001303
eggNOG:COG0724 KO:K11294 HOGENOM:HOG000124794
ProtClustDB:CLSN2705589 EMBL:DQ446672 IPI:IPI00518455
RefSeq:NP_188491.1 UniGene:At.53375 ProteinModelPortal:Q1PEP5
SMR:Q1PEP5 STRING:Q1PEP5 PaxDb:Q1PEP5 PRIDE:Q1PEP5
EnsemblPlants:AT3G18610.1 GeneID:821392 KEGG:ath:AT3G18610
TAIR:At3g18610 InParanoid:Q1PEP5 OMA:NIHVEES ArrayExpress:Q1PEP5
Genevestigator:Q1PEP5 Uniprot:Q1PEP5
Length = 636
Score = 144 (55.7 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 47/177 (26%), Positives = 74/177 (41%)
Query: 79 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICG-DPNSVLRFAFVEFTDEEGARAALSL 137
+T++ ++ Q+ + F G+VVD R+ D S + +EF E A+ AL +
Sbjct: 384 KTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKALEM 443
Query: 138 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFE 197
G +L VR+ + P N P + E SRTIY + + +IK
Sbjct: 444 NGKLLLGRDVRLDLANERGTPRNSN--PGRKGEGSQ-SRTIYVRGFSSSLGEDEIKKELR 500
Query: 198 S---VCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSK 251
S CGEV R+ + D + F + AL SG+ +G I V S+
Sbjct: 501 SHFSKCGEVTRVHVPTDRETGASRGFAYIDLTSGFDEALQLSGSEIGGGNIHVEESR 557
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 138 (53.6 bits), Expect = 8.0e-07, P = 8.0e-07
Identities = 53/194 (27%), Positives = 89/194 (45%)
Query: 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTC-GQVVDCRICGDPNSVLR--FAFVEFTDE- 128
Q E T++V D+ +VT+ L+ F G V ++ D + + FV F DE
Sbjct: 148 QTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADEN 207
Query: 129 EGARAALSLAGTMLGFYPVRVLPS--KTAIAPVNPTFLPRSED----EREMCSRTIYCTN 182
E RA + G P+R+ P+ K A+ P+ P ++ + + + TI+
Sbjct: 208 EQMRAMTEMNGQYCSTRPMRIGPAANKNAL-PMQPAMYQNTQGANAGDNDPNNTTIFVGG 266
Query: 183 IDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFA---MAESAIAALNCSGAV 239
+D VT ++K F GE+ +++ R FV++A AE A++ LN G
Sbjct: 267 LDANVTDDELKSIFGQF-GELLHVKI----PPGKRCGFVQYANKASAEHALSVLN--GTQ 319
Query: 240 LGSLPIRVSPSKTP 253
LG IR+S ++P
Sbjct: 320 LGGQSIRLSWGRSP 333
>POMBASE|SPAC19G12.07c [details] [associations]
symbol:rsd1 "RNA-binding protein Rsd1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC19G12.07c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724 GO:GO:0045292
TIGRFAMs:TIGR01622 PIR:T37994 RefSeq:NP_594422.2
EnsemblFungi:SPAC19G12.07c.1 GeneID:2542545 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 NextBio:20803597 Uniprot:O13845
Length = 603
Score = 139 (54.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 56/197 (28%), Positives = 94/197 (47%)
Query: 59 QGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVL 118
+ + R R+S ++E RRTV+VS + ++T +L F G V D +I D S
Sbjct: 220 RSRSRPRERSSKLSEEERDRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGR 279
Query: 119 R--FAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSR 176
A+VEF E+ +AA++L+G L PV V ++ A N +E R +
Sbjct: 280 SKGVAYVEFCHEDSVQAAIALSGKRLLGLPVIVQLTE---AEKNRKAREAAELARAASAE 336
Query: 177 TIY---C-TNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIA 231
+ C +NI +T D+K FE G+++ + L D Q+ ++ ++++ SA
Sbjct: 337 IPFHRLCVSNIHFNLTDEDVKAIFEPF-GDIEFVHLQRDDQNRSKGFGYIQYRNPISARN 395
Query: 232 ALN-CSGAVLGSLPIRV 247
AL +G L +RV
Sbjct: 396 ALEKMNGFDLAGRNMRV 412
>FB|FBgn0028577 [details] [associations]
symbol:pUf68 "poly U binding factor 68kD" species:7227
"Drosophila melanogaster" [GO:0008266 "poly(U) RNA binding"
evidence=ISS;NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS;IMP;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0006376 "mRNA splice site selection" evidence=NAS;IMP]
[GO:0007282 "cystoblast division" evidence=IMP] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC;IDA] [GO:0051726 "regulation of
cell cycle" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043234 "protein complex" evidence=IPI]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0001558
"regulation of cell growth" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
EMBL:AE014296 GO:GO:0008266 GO:GO:0022008 GO:GO:0000166
GO:GO:0001558 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0048477
GO:GO:0071011 GO:GO:0071013 GO:GO:0007282 eggNOG:COG0724
GO:GO:0000380 GO:GO:0006376 GO:GO:0000381
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
KO:K12838 OMA:CLQQVNG EMBL:AF190745 EMBL:AF479079 EMBL:AY061006
EMBL:BT003317 RefSeq:NP_001163315.1 RefSeq:NP_001163316.1
RefSeq:NP_001163317.1 RefSeq:NP_001163318.1 RefSeq:NP_001163319.1
RefSeq:NP_001163320.1 RefSeq:NP_525123.2 RefSeq:NP_728610.1
RefSeq:NP_728611.1 RefSeq:NP_728612.1 UniGene:Dm.7331
ProteinModelPortal:Q8T6B9 SMR:Q8T6B9 IntAct:Q8T6B9 MINT:MINT-742668
STRING:Q8T6B9 PaxDb:Q8T6B9 EnsemblMetazoa:FBtr0072709 GeneID:38173
KEGG:dme:Dmel_CG12085 CTD:38173 FlyBase:FBgn0028577
InParanoid:Q8T6B9 OrthoDB:EOG40RXXN PhylomeDB:Q8T6B9 ChiTaRS:pUf68
GenomeRNAi:38173 NextBio:807323 Bgee:Q8T6B9 GermOnline:CG12085
Uniprot:Q8T6B9
Length = 637
Score = 139 (54.0 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 53/190 (27%), Positives = 91/190 (47%)
Query: 72 QQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR--FAFVEFTDEE 129
QQ + VYV I ++ E+ + F G + + DP + FAFVE+ E
Sbjct: 123 QQALALMCRVYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPE 182
Query: 130 GARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVT 188
GA+ AL + G ++G ++V + + P + ++E + +R IY +I ++
Sbjct: 183 GAQLALEQMNGALMGGRNIKV--GRPSNMPQAQQVIDEVQEEAKSFNR-IYVASIHPDLS 239
Query: 189 QGDIKLFFESVCGEVQRLRLL-GDYQHSTR-IAFVEFAMAES---AIAALNCSGAVLGSL 243
+ DIK FE+ G + +L G H+ + F+E+A ++ AIA++N LG
Sbjct: 240 EEDIKSVFEAF-GPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFD--LGGQ 296
Query: 244 PIRVSPSKTP 253
+RV S TP
Sbjct: 297 LLRVGRSITP 306
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 136 (52.9 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 52/193 (26%), Positives = 84/193 (43%)
Query: 72 QQDEVIRRTVYVSDIDQQVTEEQLATLFLTC-GQVVDCRICGDPNSVLR--FAFVEFTDE 128
+Q E TV+V D+ VT+ L F V ++ D + + FV F DE
Sbjct: 166 RQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADE 225
Query: 129 -EGARAALSLAGTMLGFYPVRVLPSKT----AIAPVNPTFLPRSEDEREMCSRTIYCTNI 183
E RA + G P+R P+ + P + + E + + TI+ +
Sbjct: 226 SEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAV 285
Query: 184 DKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFA---MAESAIAALNCSGAVL 240
D+ VT+ D+K F GE+ +++ R FV++A AE A++ LN G L
Sbjct: 286 DQSVTEDDLKSVFGQF-GELVHVKIPA----GKRCGFVQYANRACAEQALSVLN--GTQL 338
Query: 241 GSLPIRVSPSKTP 253
G IR+S ++P
Sbjct: 339 GGQSIRLSWGRSP 351
Score = 37 (18.1 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 6/8 (75%), Positives = 8/8 (100%)
Query: 53 KRNGYSQG 60
K+NGYS+G
Sbjct: 115 KQNGYSEG 122
>POMBASE|SPBC16E9.12c [details] [associations]
symbol:pab2 "poly(A) binding protein Pab2" species:4896
"Schizosaccharomyces pombe" [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0008143 "poly(A) RNA binding" evidence=IDA] [GO:0010972
"negative regulation of G2/M transition of mitotic cell cycle"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBC16E9.12c GO:GO:0005634
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR eggNOG:COG0724 GO:GO:0000289
GO:GO:0010972 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
PIR:T39586 RefSeq:NP_595794.1 ProteinModelPortal:O14327 SMR:O14327
STRING:O14327 EnsemblFungi:SPBC16E9.12c.1 GeneID:2539733
KEGG:spo:SPBC16E9.12c OMA:RARAISY OrthoDB:EOG44N22T
NextBio:20800884 Uniprot:O14327
Length = 166
Score = 119 (46.9 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 29/89 (32%), Positives = 50/89 (56%)
Query: 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTD 127
++ + ++VYV ++D VT E+L + F +CG V + C + G P FA++EF++
Sbjct: 49 KESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKG---FAYIEFSE 105
Query: 128 EEGARAALSLAGTMLGFYPVRVLPSKTAI 156
AL L G+ML P++V P +T +
Sbjct: 106 PSLVPNALLLNGSMLHERPLKVTPKRTNV 134
Score = 115 (45.5 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 27/88 (30%), Positives = 49/88 (55%)
Query: 169 DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMA 226
D+ + ++++Y N+D VT +++ F S CG V R+ +L D H A++EF+
Sbjct: 48 DKESIDAQSVYVGNVDYSVTPEELQSHFAS-CGSVNRVTILCDKFTGHPKGFAYIEFSEP 106
Query: 227 ESAIAALNCSGAVLGSLPIRVSPSKTPV 254
AL +G++L P++V+P +T V
Sbjct: 107 SLVPNALLLNGSMLHERPLKVTPKRTNV 134
>DICTYBASE|DDB_G0277371 [details] [associations]
symbol:pabpn1 "polyadenylate-binding protein 2"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008143 "poly(A)
RNA binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0277371 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000151_GR EMBL:AAFI02000019 eggNOG:NOG238057
GO:GO:0008143 KO:K14396 HSSP:P33240 RefSeq:XP_642788.1
ProteinModelPortal:Q54ZS8 SMR:Q54ZS8 STRING:Q54ZS8
EnsemblProtists:DDB0233678 GeneID:8620981 KEGG:ddi:DDB_G0277371
OMA:FETEGQA Uniprot:Q54ZS8
Length = 222
Score = 127 (49.8 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 28/86 (32%), Positives = 46/86 (53%)
Query: 169 DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAMA 226
D+ E+ SR++Y N+D K T I +F+S CG V R+ +L D H +VEF
Sbjct: 94 DQEEIDSRSVYVGNVDYKSTHDQILAYFQS-CGTVNRITILSDKTTGHPKGCCYVEFVNK 152
Query: 227 ESAIAALNCSGAVLGSLPIRVSPSKT 252
ES I A+ + + ++++P +T
Sbjct: 153 ESIINAMALNDSFFNERQLKITPKRT 178
>DICTYBASE|DDB_G0275459 [details] [associations]
symbol:DDB_G0275459 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275459 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724 KO:K11294
RefSeq:XP_643642.1 ProteinModelPortal:Q75K16 STRING:Q75K16
PRIDE:Q75K16 EnsemblProtists:DDB0231494 GeneID:8620229
KEGG:ddi:DDB_G0275459 InParanoid:Q75K16 OMA:LRINGAN Uniprot:Q75K16
Length = 299
Score = 130 (50.8 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 55/189 (29%), Positives = 87/189 (46%)
Query: 68 TSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICG-DPNSVLRFAFVEFT 126
+SN + D+ ++ V+V + VTE L F CG + + +I +P V AF+ F
Sbjct: 67 SSNTKTDDDLK--VFVGQLPSGVTEYDLKEYFSECGDISNIKILNSNPQRVA--AFITFA 122
Query: 127 DEEGARAALSLAGTML-GFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDK 185
DE+G A++ G G +R+ + + P S+ E E TI C NI
Sbjct: 123 DEKGRDTAITYNGKDFNGQGSLRINGANS-----KP-----SDGEGE--PTTIVCRNIAF 170
Query: 186 KVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRI---AFVEFAMAESAIAALNCSGAVLGS 242
V + +K FF S CG + R+ L Y+ S R+ AFV F ++ A+ +G
Sbjct: 171 TVDETLVKEFF-SKCGSISRVSL-PVYEDSGRLKGFAFVSFDSEDAVEKAIALTGTKFEG 228
Query: 243 LPIRVSPSK 251
I+V S+
Sbjct: 229 REIQVERSQ 237
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 135 (52.6 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 47/176 (26%), Positives = 76/176 (43%)
Query: 66 CRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-F 120
CR +Q+D +R+T V++ ++D + + L F G ++ C++ D V + +
Sbjct: 113 CRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGY 172
Query: 121 AFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSR--TI 178
FV + E A A+ ML L K + + R EM + I
Sbjct: 173 GFVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNI 225
Query: 179 YCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAAL 233
Y NID +V + + FE GE+ L D + +R FV F+ ESA AA+
Sbjct: 226 YIKNIDPEVEDEEFRKLFEKF-GEITSATLSRDSEGKSRGFGFVNFSTHESAQAAV 280
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 134 (52.2 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 48/174 (27%), Positives = 77/174 (44%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSL 137
++YV D+D VT+ QL F QVV R+C D N+ L + +V +++ + A A+
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQ- 105
Query: 138 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFE 197
L + L K + T+ R R ++ N+DK V + F
Sbjct: 106 ---KLNY---SYLNGKM----IRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAF- 154
Query: 198 SVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 249
S CG + ++ D+ +R FV+F +SA A+ +G VL I V P
Sbjct: 155 SGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGP 208
Score = 116 (45.9 bits), Expect = 0.00060, P = 0.00060
Identities = 45/193 (23%), Positives = 84/193 (43%)
Query: 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTD-EEGA 131
D++ VYV ++ + T+++L T F G + + D + R F FV F + E+ A
Sbjct: 220 DKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAA 279
Query: 132 RAALSLAGTMLG---FYPVRVLPSKTAIAPVNPTFLPRSEDE-REMCSRTIYCTNIDKKV 187
RA +L G +Y + ++ + S D + +Y N+D V
Sbjct: 280 RAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTV 339
Query: 188 TQGDIKLFFESVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAALN-CSGAVLGSLPI 245
T ++ F G + +++ D +++ FV F+ A A LN +G ++G P+
Sbjct: 340 TDEKLRELFAEF-GTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPL 398
Query: 246 RVSPSKTPVRPRA 258
V+ ++ RA
Sbjct: 399 YVALAQRKEERRA 411
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 133 (51.9 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 55/209 (26%), Positives = 91/209 (43%)
Query: 49 TAFQKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDC 108
TA Q N Q ++ S +Q E ++YV D++ V+E L +F G V
Sbjct: 8 TAEQLENLNIQDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSI 67
Query: 109 RICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPR 166
R+C D + L +A+V F D E R A+ L + P++ + + +P+
Sbjct: 68 RVCRDAITKTSLGYAYVNFNDHEAGRKAIE----QLNYTPIKGRLCRIMWSQRDPSL--- 120
Query: 167 SEDEREMCSRTIYCTNIDKKVTQGDIKLFFE--SVCGEVQRLRLLGDYQHSTR-IAFVEF 223
R+ S I+ N+ + D K ++ SV G++ ++ D ++ FV F
Sbjct: 121 ----RKKGSGNIFIKNLHPDI---DNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHF 173
Query: 224 ---AMAESAIAALNCSGAVLGSLPIRVSP 249
A+ AI ALN G +L I V+P
Sbjct: 174 EEEGAAKEAIDALN--GMLLNGQEIYVAP 200
>UNIPROTKB|Q804A5 [details] [associations]
symbol:Pabpn1l-a "Embryonic polyadenylate-binding protein
2-A" species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 HOVERGEN:HBG107480
GO:GO:0008143 EMBL:AY221506 RefSeq:NP_001082505.1 UniGene:Xl.83425
ProteinModelPortal:Q804A5 SMR:Q804A5 DIP:DIP-46304N GeneID:398516
KEGG:xla:398516 CTD:398516 Xenbase:XB-GENE-6256056 Uniprot:Q804A5
Length = 218
Score = 123 (48.4 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 44/154 (28%), Positives = 70/154 (45%)
Query: 107 DCRICGDPN-SVLRFAFVEFTDEEGARAALSLAGTMLGFYP---VRVLPSK-TAIAPVNP 161
+C + DP +R E +E LS +G P ++++ SK TA
Sbjct: 19 ECEL-DDPELKAIRMRVREMEEEAERLKGLSGQDKSIGVSPRPCMKLIHSKMTAGEYTEG 77
Query: 162 TFLPRS-EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRI 218
P S E+++E+ R++Y N+D T D++ F S CG + R+ +L D H
Sbjct: 78 PPRPLSAEEKKEIDKRSVYVGNVDYGGTAQDLEAHFSS-CGSINRITILCDKFSGHPKGY 136
Query: 219 AFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKT 252
A++EFA S AA+ V I+V P +T
Sbjct: 137 AYIEFAERNSVDAAVTMDETVFRGRTIKVLPKRT 170
Score = 111 (44.1 bits), Expect = 0.00029, P = 0.00029
Identities = 29/111 (26%), Positives = 57/111 (51%)
Query: 57 YSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RIC 111
Y++G R S ++ E+ +R+VYV ++D T + L F +CG + + C +
Sbjct: 74 YTEGPPRP---LSAEEKKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFS 130
Query: 112 GDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPT 162
G P +A++EF + AA+++ T+ ++VLP +T + ++ T
Sbjct: 131 GHPKG---YAYIEFAERNSVDAAVTMDETVFRGRTIKVLPKRTNMPGISST 178
>WB|WBGene00003904 [details] [associations]
symbol:pabp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040019
"positive regulation of embryonic development" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0000003 GO:GO:0003676 GO:GO:0040019 EMBL:Z81037
eggNOG:NOG238057 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OMA:FETEGQA PIR:T19356
RefSeq:NP_492504.1 ProteinModelPortal:Q93233 SMR:Q93233
DIP:DIP-26233N IntAct:Q93233 MINT:MINT-1047210 STRING:Q93233
PaxDb:Q93233 EnsemblMetazoa:C17E4.5.1 EnsemblMetazoa:C17E4.5.2
GeneID:172768 KEGG:cel:CELE_C17E4.5 UCSC:C17E4.5 CTD:172768
WormBase:C17E4.5 InParanoid:Q93233 NextBio:876929 Uniprot:Q93233
Length = 205
Score = 121 (47.7 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 33/105 (31%), Positives = 54/105 (51%)
Query: 55 NGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-R 109
N SQ + T ++ E ++VYV ++D T E++ F CG V + C R
Sbjct: 55 NTSSQSNSSQSLLTPE-EKAEADAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDR 113
Query: 110 ICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 154
G P FA+VEFT++EG + AL++ ++L ++V P +T
Sbjct: 114 FSGHPKG---FAYVEFTEKEGMQNALAMTDSLLRGRQIKVDPKRT 155
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 131 (51.2 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 53/195 (27%), Positives = 86/195 (44%)
Query: 50 AFQKRNGYSQGKRRMNCRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQV 105
A ++ N Y+ K R CR +Q+D +R+T V++ ++D + + L F G +
Sbjct: 118 ALEELN-YTLIKGRP-CRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNI 175
Query: 106 VDCRICGDPNSVLR-FAFVEF-TDEEGARAALSLAGTMLGFYPVRV---LPSKTAIAPVN 160
+ C++ D N + + FV + TDE ++A + G +L V V +P K
Sbjct: 176 LSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDR----Q 231
Query: 161 PTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRI 218
F DE + IY NI+ +VT + + FE G+V L D + S
Sbjct: 232 SKF-----DEMKANFTNIYVKNINPEVTDDEFRTLFEKY-GDVTSSSLARDQETGKSRGF 285
Query: 219 AFVEFAMAESAIAAL 233
FV F E A A+
Sbjct: 286 GFVNFTSHEDASKAV 300
>WB|WBGene00020354 [details] [associations]
symbol:T08B6.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG238057
HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517 EMBL:FO081718
PIR:T15076 RefSeq:NP_500666.2 ProteinModelPortal:O44530 SMR:O44530
STRING:O44530 EnsemblMetazoa:T08B6.5 GeneID:177260
KEGG:cel:CELE_T08B6.5 UCSC:T08B6.5 CTD:177260 WormBase:T08B6.5
InParanoid:O44530 OMA:ELETHFK NextBio:896018 Uniprot:O44530
Length = 177
Score = 117 (46.2 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 32/102 (31%), Positives = 53/102 (51%)
Query: 153 KTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY 212
K A++ P +E++ + +R++Y N+D K T +I+ F +VCG+V R+ + D
Sbjct: 23 KQALSASKKYMAPTAEEQEKTDARSVYVGNVDWKSTVSEIEEHF-AVCGKVARVTIPKDK 81
Query: 213 --QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKT 252
+ AFVEF ES AL SG + + I V+ +T
Sbjct: 82 FTGYQKNFAFVEFQKLESVQLALVLSGTMFRNRKIMVTLKRT 123
Score = 104 (41.7 bits), Expect = 0.00093, P = 0.00093
Identities = 28/85 (32%), Positives = 44/85 (51%)
Query: 72 QQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR--FAFVEFTDEE 129
+Q++ R+VYV ++D + T ++ F CG+V I D + + FAFVEF E
Sbjct: 39 EQEKTDARSVYVGNVDWKSTVSEIEEHFAVCGKVARVTIPKDKFTGYQKNFAFVEFQKLE 98
Query: 130 GARAALSLAGTMLGFYPVRVLPSKT 154
+ AL L+GTM + V +T
Sbjct: 99 SVQLALVLSGTMFRNRKIMVTLKRT 123
>WB|WBGene00004704 [details] [associations]
symbol:rsp-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040017
"positive regulation of locomotion" evidence=IMP] [GO:0019915
"lipid storage" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0006898 GO:GO:0040010
GO:GO:0002119 GO:GO:0016246 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0040017 GO:GO:0003723 GO:GO:0019915
GO:GO:0000398 EMBL:Z36948 GeneTree:ENSGT00700000104035 EMBL:Z49911
PIR:T20382 RefSeq:NP_741039.1 RefSeq:NP_741040.1
ProteinModelPortal:O01159 SMR:O01159 STRING:O01159 PaxDb:O01159
PRIDE:O01159 EnsemblMetazoa:D2089.1a GeneID:174646
KEGG:cel:CELE_D2089.1 UCSC:D2089.1b.1 CTD:174646 WormBase:D2089.1a
WormBase:D2089.1b eggNOG:NOG277302 InParanoid:O01159 KO:K13165
OMA:CAYAYVE NextBio:884894 Uniprot:O01159
Length = 452
Score = 89 (36.4 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 30/105 (28%), Positives = 44/105 (41%)
Query: 158 PVNPTFLPRSEDER--EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLL-GDYQH 214
P P LP D E RT+Y N+ K V ++ F GEV R+ G
Sbjct: 144 PAYPP-LPADTDSAKVEEIRRTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPDAL 202
Query: 215 STRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKTPV-RPRA 258
A+VEF+ S AL G P+++ S+ + +P+A
Sbjct: 203 PCAYAYVEFSQQASVCNALQNDGFEFKERPLKIQHSRVAIIKPQA 247
Score = 81 (33.6 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 23/100 (23%), Positives = 50/100 (50%)
Query: 69 SNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRIC---GD--PNSVLRFAFV 123
S ++++V + ++V++I T + + +F G++ D ++ G+ N++L+ AF+
Sbjct: 2 SGEEKEKV--KILHVANISTSATRDHIYNMFNYLGKIQDLKVYPSEGNITANTLLKTAFI 59
Query: 124 EFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTF 163
+F DE A L T++ + LP + P +F
Sbjct: 60 KFDDERCVEVAQHLTNTVVIDCAIVCLPYPNPVIPDEESF 99
>DICTYBASE|DDB_G0291386 [details] [associations]
symbol:DDB_G0291386 "RNA recognition motif RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0291386 EMBL:AAFI02000177 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 RefSeq:XP_635179.1
ProteinModelPortal:Q54ER1 EnsemblProtists:DDB0304622 GeneID:8628125
KEGG:ddi:DDB_G0291386 InParanoid:Q54ER1 Uniprot:Q54ER1
Length = 463
Score = 127 (49.8 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 52/223 (23%), Positives = 101/223 (45%)
Query: 47 FNTAFQKRNGYSQGKRRMNCRTSNAQQDEVIRR-TVYVSDIDQQVTEEQLATLFL-TCGQ 104
+ F ++ Q +++M + QQ + ++Y+ D+ VT++QL F
Sbjct: 80 YGRGFPQQMQQMQQQQQMQQQQQQQQQQQSDSDLSLYIGDLATDVTDQQLMNAFQGRYPS 139
Query: 105 VVDCRICGDP-NSVLR-FAFVEF-TDEEGARAALSLAGTMLGFYPVRVL-PSKTAIAPVN 160
V R+ D + R + FV+F +D E +A + + G + P++V P+ +
Sbjct: 140 VRSARVIMDSATGISRGYGFVKFASDVEKDKALIDMNGFYINNKPIKVNNPTHKRLNSQT 199
Query: 161 PTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAF 220
T + + + IY + +D + +G ++ F + GE+ +++L + + S AF
Sbjct: 200 STIPDLTSTDPN--NTAIYVSQLDHYIDEGVLQTIFGAY-GEISYIKMLTN-KFS---AF 252
Query: 221 VEFAMAESAIAALNCSGAVLGSLPIRVSPSKTPVRPRAPRPPL 263
V F ESA AA + +G+ ++V K V P PP+
Sbjct: 253 VNFVNRESAEAAFGLNNFPVGNTRLKVQWGKN-VAPPPKSPPM 294
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 103 (41.3 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 37/110 (33%), Positives = 54/110 (49%)
Query: 145 YPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQ 204
YPV V PS A APV P D C+ TI N+D+ VT+ ++K F + GEV
Sbjct: 211 YPVTV-PSAVA-APVQAYVAPPESDVT--CT-TISVANLDQNVTEEELKKAFSQL-GEVI 264
Query: 205 RLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTP 253
+++ + +V+F SA A+ G V+G +R+S SK P
Sbjct: 265 YVKIPATKGYG----YVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNP 310
Score = 64 (27.6 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 19/70 (27%), Positives = 31/70 (44%)
Query: 79 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCR-----ICGDPNSVLRFAFVEFTDEEGARA 133
RT+++ D+ V E L + F G++V + I G P + F+EF A
Sbjct: 24 RTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEG---YGFIEFISHAAAER 80
Query: 134 AL-SLAGTML 142
L + GT +
Sbjct: 81 TLQTYNGTQM 90
>ZFIN|ZDB-GENE-080709-5 [details] [associations]
symbol:pabpn1l "poly(A) binding protein, nuclear 1,
like" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-080709-5 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000001517
EMBL:BX248306 IPI:IPI00852075 RefSeq:XP_001923043.1
ProteinModelPortal:E9QGY6 Ensembl:ENSDART00000135304 GeneID:796580
KEGG:dre:796580 NextBio:20932666 ArrayExpress:E9QGY6 Bgee:E9QGY6
Uniprot:E9QGY6
Length = 192
Score = 118 (46.6 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 30/90 (33%), Positives = 47/90 (52%)
Query: 78 RRTVYVSDIDQQVTEEQLATLFLTCGQV--VDC---RICGDPNSVLRFAFVEFTDEEGAR 132
RR++YV ++D T ++L F +CG V V R G P FA++EF+D E R
Sbjct: 65 RRSIYVGNVDYGATADELEMYFNSCGHVNRVTIPYNRFTGHPKG---FAYIEFSDRESVR 121
Query: 133 AALSLAGTMLGFYPVRVLPSKTAIAPVNPT 162
A++L T+ ++V P +T I + T
Sbjct: 122 TAMALDETLFRGRVIKVSPKRTNIPGFSTT 151
Score = 106 (42.4 bits), Expect = 0.00075, P = 0.00075
Identities = 28/101 (27%), Positives = 50/101 (49%)
Query: 157 APVNPTFLPRSEDER-EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRL-LGDYQ- 213
+P F + +ER + R+IY N+D T +++++F S CG V R+ + +
Sbjct: 46 SPEAELFFDMTHEERIDSDRRSIYVGNVDYGATADELEMYFNS-CGHVNRVTIPYNRFTG 104
Query: 214 HSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKTPV 254
H A++EF+ ES A+ + I+VSP +T +
Sbjct: 105 HPKGFAYIEFSDRESVRTAMALDETLFRGRVIKVSPKRTNI 145
>UNIPROTKB|H0YEM1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
Ensembl:ENST00000527744 Uniprot:H0YEM1
Length = 336
Score = 124 (48.7 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 55/215 (25%), Positives = 92/215 (42%)
Query: 56 GYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN 115
G+ + + Q+ I VYV I ++ E+ + F G + + D
Sbjct: 104 GFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSV 163
Query: 116 SVLR--FAFVEFTDEEGARAALS-LAGTMLGFYPVRV-LPSKTAIAPVNPTFLPRSEDER 171
++ FAFVE+ E A+ AL + MLG ++V PS I P +E+ R
Sbjct: 164 TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEAR 221
Query: 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR--IAFVEFAMAESA 229
+R IY ++ + ++ DIK FE+ G+++ L D F+E+ A+S+
Sbjct: 222 AF-NR-IYVASVHQDLSDDDIKSVFEAF-GKIKSCTLARDPTTGKHKGYGFIEYEKAQSS 278
Query: 230 IAALNCSGAV-LGSLPIRVSPSKTPVRPR-APRPP 262
A++ LG +RV + TP P P P
Sbjct: 279 QDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 313
>UNIPROTKB|B4DEH8 [details] [associations]
symbol:PABPN1 "cDNA FLJ57714, highly similar to
Poly(A)-binding protein 2" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829
HOVERGEN:HBG107480 HOGENOM:HOG000208465 IPI:IPI00414963
UniGene:Hs.707712 HGNC:HGNC:8565 EMBL:AK293633 SMR:B4DEH8
STRING:B4DEH8 Ensembl:ENST00000557702 Uniprot:B4DEH8
Length = 168
Score = 114 (45.2 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 129
E R++YV ++D T E+L F CG V + C + G P FA++EF+D+E
Sbjct: 40 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKE 96
Query: 130 GARAALSLAGTMLGFYPVRVLPSKT 154
R +L+L ++ ++V+P +T
Sbjct: 97 SVRTSLALDESLFRGRQIKVIPKRT 121
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 127 (49.8 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 45/201 (22%), Positives = 90/201 (44%)
Query: 66 CRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRF 120
CR +Q+D +R++ V++ ++D+ + + L F G ++ C++ D NS F
Sbjct: 81 CRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGF 140
Query: 121 AFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIY 179
FV + +E A A++ + G M+ V V P K++ PT E+ ++
Sbjct: 141 GFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPT---------EVKFTNVF 191
Query: 180 CTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAAL-NCSG 237
N+ + V +K + GE+ + ++ D + ++ F F AE+A + N +G
Sbjct: 192 FKNLSEDVGPDQLKELLQQY-GEITNITIMADDKGKSKGFGFANFESAEAAKNVVENENG 250
Query: 238 AVLGSLPIRVSPSKTPVRPRA 258
+ PI ++ + A
Sbjct: 251 KIFHGKPIYAGRAQKKIEREA 271
>DICTYBASE|DDB_G0293252 [details] [associations]
symbol:DDB_G0293252 "putative RNA binding protein"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000061
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 Pfam:PF01805
PROSITE:PS50102 PROSITE:PS50128 SMART:SM00360 SMART:SM00648
dictyBase:DDB_G0293252 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AAFI02000200 GO:GO:0006396 Gene3D:1.25.40.90
InterPro:IPR008942 SUPFAM:SSF48464 InterPro:IPR006903
InterPro:IPR006569 Pfam:PF04818 SMART:SM00582 SUPFAM:SSF109905
PROSITE:PS51391 eggNOG:NOG314315 RefSeq:XP_629218.1
ProteinModelPortal:Q54C48 GeneID:8629100 KEGG:ddi:DDB_G0293252
InParanoid:Q54C48 OMA:FGKVENA Uniprot:Q54C48
Length = 691
Score = 128 (50.1 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 55/208 (26%), Positives = 97/208 (46%)
Query: 52 QKRNGY--SQGKRRMNCRTSNAQQDEVIRRT--VYVSDIDQQVTEEQLATLFLTCGQVVD 107
Q++ GY G +M N + T V+ +I+ + TEE++ LF G +
Sbjct: 146 QQQGGYMGGNGPNQMAPHYQNKGAGGQLEPTKIVWAGNINPESTEEEVRHLFSQFGYLQA 205
Query: 108 CRICGDPNSVLRFAFVEFTDEEGA-RAALSLAGTMLGFYPVRVLPSKTAIAP-VN---PT 162
+I PN + AF+ F D A +A +L GT+ P+++ K AP N
Sbjct: 206 IKII--PNK--QCAFITFADVNCAIQAQFNLNGTIFRGLPLKLGFGKVENAPQANFGGGR 261
Query: 163 FLPRSEDEREMC-SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFV 221
F ++ +E ++ ++ N++ V+ +K F+ G V +R+L H AFV
Sbjct: 262 FDQYNKPHQEETPTKNLWLGNVNSNVSYELLKQIFDQF-GNVDTIRIL----HGRGCAFV 316
Query: 222 EFAMAESAIAALN-CSGAVLGSLPIRVS 248
F ESA AA N +G ++ +P++++
Sbjct: 317 NFFTVESAAAARNGLNGTMVCGMPLKIN 344
>UNIPROTKB|F1NA97 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:AADN02016569 EMBL:AADN02016570 EMBL:AADN02016571
EMBL:AADN02016572 EMBL:AADN02016573 EMBL:AADN02016574
IPI:IPI00596858 Ensembl:ENSGALT00000036523 ArrayExpress:F1NA97
Uniprot:F1NA97
Length = 366
Score = 124 (48.7 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 55/215 (25%), Positives = 92/215 (42%)
Query: 56 GYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN 115
G+ + + Q+ I VYV I ++ E+ + F G + + D
Sbjct: 63 GFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSV 122
Query: 116 SVLR--FAFVEFTDEEGARAALS-LAGTMLGFYPVRV-LPSKTAIAPVNPTFLPRSEDER 171
++ FAFVE+ E A+ AL + MLG ++V PS I P +E+ R
Sbjct: 123 TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEAR 180
Query: 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR--IAFVEFAMAESA 229
+R IY ++ + ++ DIK FE+ G+++ L D F+E+ A+S+
Sbjct: 181 AF-NR-IYVASVHQDLSDDDIKSVFEAF-GKIKSCTLARDPTTGKHKGYGFIEYEKAQSS 237
Query: 230 IAALNCSGAV-LGSLPIRVSPSKTPVRPR-APRPP 262
A++ LG +RV + TP P P P
Sbjct: 238 QDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 272
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 126 (49.4 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 55/211 (26%), Positives = 91/211 (43%)
Query: 52 QKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRIC 111
+KR + R + + QD TV+V + V ++ L F G +V R+
Sbjct: 237 KKRKAEPASEERP-AKITKPSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVI 295
Query: 112 GDPNSVLR--FAFVEFTDEEGARAALSLAGTM-LGFYPVRVLPSKTAIAPVNPTFLPRSE 168
D S + +V+F E A+AA++ GT + V + S A P R+
Sbjct: 296 MDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAG 355
Query: 169 ---DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRI---AFVE 222
D+ S T++ N+ T+ D+ F CG++Q +RL D Q S R+ +V
Sbjct: 356 NFGDQLSEPSDTVFVGNLSFNATEDDLSTAFGG-CGDIQSIRLPTDPQ-SGRLKGFGYVT 413
Query: 223 FAMAESAIAALNCSGAVLGSLPIRVSPSKTP 253
F+ +SA + +G + P R+ S TP
Sbjct: 414 FSDIDSAKKCVEMNGHFIAGRPCRLDFS-TP 443
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 119 (46.9 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 43/183 (23%), Positives = 78/183 (42%)
Query: 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGA 131
+D V+V +I + +E+L LF G ++ D + + F FV + E A
Sbjct: 29 RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAA 88
Query: 132 -RAALSLAGTMLG---FYPVRVLPSKTAIAPVNPTFLP-RSEDEREMCSRTIYCTNIDKK 186
+A L L G + Y R +A + F R +++ IY N+D+
Sbjct: 89 QKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDET 148
Query: 187 VTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPI 245
+ +K F S G + R +++ + V F+ E A A++ +G ++GS P+
Sbjct: 149 INDEKLKEEFSSF-GSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPL 207
Query: 246 RVS 248
V+
Sbjct: 208 HVT 210
>ZFIN|ZDB-GENE-050327-97 [details] [associations]
symbol:rbm39b "RNA binding motif protein 39b"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050327-97
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 GeneTree:ENSGT00690000102089 EMBL:CR550308
EMBL:BC091794 IPI:IPI00498276 RefSeq:NP_001014392.1
UniGene:Dr.76447 SMR:Q58ER0 Ensembl:ENSDART00000061328
GeneID:541556 KEGG:dre:541556 CTD:541556 InParanoid:Q58ER0
OMA:NCLASST NextBio:20879330 Uniprot:Q58ER0
Length = 539
Score = 126 (49.4 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 52/204 (25%), Positives = 89/204 (43%)
Query: 51 FQK-RNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCR 109
F+K ++ + + K + N +E RTV+ + ++ L F G+V D R
Sbjct: 138 FKKDKSPFKKDKSPVRQPIDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVR 197
Query: 110 ICGDPNSVLR--FAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS 167
+ D NS A+VEF D A+ L G + P+ V S+ A N S
Sbjct: 198 MISDRNSRRSKGIAYVEFVDSTSVPLAIGLTGQRVLGVPIIVQASQ---AEKNRAAAMAS 254
Query: 168 EDEREMCS-RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFA 224
+R +Y ++ +T+ ++ FE G+++ ++L+ D + S F+ FA
Sbjct: 255 MLQRGGAGPMRLYVGSLHFNITEDMLRGIFEPF-GKIEGIQLMMDSETGRSKGYGFISFA 313
Query: 225 MAESAIAALN-CSGAVLGSLPIRV 247
AE A AL +G L P++V
Sbjct: 314 DAECAKKALEQLNGFELAGRPMKV 337
>UNIPROTKB|E9PQ56 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
IPI:IPI00985156 ProteinModelPortal:E9PQ56 SMR:E9PQ56
Ensembl:ENST00000526459 ArrayExpress:E9PQ56 Bgee:E9PQ56
Uniprot:E9PQ56
Length = 323
Score = 122 (48.0 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 52/190 (27%), Positives = 85/190 (44%)
Query: 81 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR--FAFVEFTDEEGARAALS-L 137
VYV I ++ E+ + F G + + D ++ FAFVE+ E A+ AL +
Sbjct: 113 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 172
Query: 138 AGTMLGFYPVRV-LPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 196
MLG ++V PS I P +E+ R +R IY ++ + ++ DIK F
Sbjct: 173 NSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEARAF-NR-IYVASVHQDLSDDDIKSVF 228
Query: 197 ESVCGEVQRLRLLGDYQHSTR--IAFVEFAMAESAIAALNCSGAV-LGSLPIRVSPSKTP 253
E+ G+++ L D F+E+ A+S+ A++ LG +RV + TP
Sbjct: 229 EAF-GKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTP 287
Query: 254 VRPR-APRPP 262
P P P
Sbjct: 288 PMPLLTPATP 297
>TAIR|locus:2142519 [details] [associations]
symbol:AT5G10350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0005774 "vacuolar membrane" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005774 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AL353995 eggNOG:NOG238057 GO:GO:0008143
KO:K14396 HOGENOM:HOG000208465 ProtClustDB:CLSN2715990
EMBL:BT003893 EMBL:BT005003 IPI:IPI00533153 PIR:T50004
RefSeq:NP_196597.1 UniGene:At.32388 ProteinModelPortal:Q9LX90
SMR:Q9LX90 IntAct:Q9LX90 STRING:Q9LX90 PaxDb:Q9LX90 PRIDE:Q9LX90
EnsemblPlants:AT5G10350.1 GeneID:830899 KEGG:ath:AT5G10350
TAIR:At5g10350 InParanoid:Q9LX90 OMA:MAANQEG PhylomeDB:Q9LX90
ArrayExpress:Q9LX90 Genevestigator:Q9LX90 Uniprot:Q9LX90
Length = 217
Score = 118 (46.6 bits), Expect = 4.1e-05, P = 4.1e-05
Identities = 28/88 (31%), Positives = 49/88 (55%)
Query: 168 EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD-YQHSTRIAFVEFAMA 226
E + E+ +R++Y N+D T +++L F++ CG V R+ +L D + A+VEF
Sbjct: 81 EGKEEVDARSVYVGNVDYACTPEEVQLHFQT-CGTVNRVTILMDKFGQPKGFAYVEFVEV 139
Query: 227 ESAIAALNCSGAVLGSLPIRVSPSKTPV 254
E+ AL + + L ++VSP +T V
Sbjct: 140 EAVQEALQLNESELHGRQLKVSPKRTNV 167
Score = 111 (44.1 bits), Expect = 0.00029, P = 0.00029
Identities = 33/106 (31%), Positives = 51/106 (48%)
Query: 52 QKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRIC 111
+K G +Q M ++EV R+VYV ++D T E++ F TCG V I
Sbjct: 64 EKEMGATQDPASMAANQEG--KEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTIL 121
Query: 112 GDPNSVLR-FAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAI 156
D + FA+VEF + E + AL L + L ++V P +T +
Sbjct: 122 MDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQLKVSPKRTNV 167
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 126 (49.4 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 50/202 (24%), Positives = 83/202 (41%)
Query: 52 QKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRIC 111
Q NG + + A + ++YV D+D VT+ QL F G VV R+C
Sbjct: 9 QTPNGSTAAVTSAPATSGGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVC 68
Query: 112 GD--PNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSED 169
D L + +V FT+ + A A+ L + P L K P+ + R
Sbjct: 69 RDLVTRRSLGYGYVNFTNPQDAARAIQ----ELNYIP---LYGK----PIRVMYSHRDPS 117
Query: 170 EREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR-IAFVEFAMAES 228
R + I+ N+D+ + + F S G + ++ D ++ FV++A ES
Sbjct: 118 VRRSGAGNIFIKNLDESIDHKALHDTFSSF-GNIVSCKVAVDSSGQSKGYGFVQYANEES 176
Query: 229 AIAALN-CSGAVLGSLPIRVSP 249
A A+ +G +L + V P
Sbjct: 177 AQKAIEKLNGMLLNDKQVYVGP 198
>UNIPROTKB|J9P4I7 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AAEX03008941
Ensembl:ENSCAFT00000045695 Uniprot:J9P4I7
Length = 560
Score = 125 (49.1 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 57/213 (26%), Positives = 94/213 (44%)
Query: 60 GKRRMNCRTSNAQQDEV--IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSV 117
GK + ++ AQ+ I VYV I ++ E+ + F G + + D ++
Sbjct: 109 GKPLLPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTM 168
Query: 118 LR--FAFVEFTDEEGARAALS-LAGTMLGFYPVRV-LPSKTAIAPVNPTFLPRSEDEREM 173
FAFVE+ E A+ AL + MLG ++V PS I P +E+ R
Sbjct: 169 KHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEARAF 226
Query: 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR--IAFVEFAMAESAIA 231
+R IY ++ + ++ DIK FE+ G+++ L D F+E+ A+S+
Sbjct: 227 -NR-IYVASVHQDLSDDDIKSVFEAF-GKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQD 283
Query: 232 ALNCSGAV-LGSLPIRVSPSKTPVRPR-APRPP 262
A++ LG +RV + TP P P P
Sbjct: 284 AVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 316
>UNIPROTKB|G3V4T2 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829 HGNC:HGNC:8565
ProteinModelPortal:G3V4T2 SMR:G3V4T2 Ensembl:ENST00000556821
ArrayExpress:G3V4T2 Bgee:G3V4T2 Uniprot:G3V4T2
Length = 178
Score = 114 (45.2 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 129
E R++YV ++D T E+L F CG V + C + G P FA++EF+D+E
Sbjct: 40 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKE 96
Query: 130 GARAALSLAGTMLGFYPVRVLPSKT 154
R +L+L ++ ++V+P +T
Sbjct: 97 SVRTSLALDESLFRGRQIKVIPKRT 121
>FB|FBgn0031883 [details] [associations]
symbol:CG11266 species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
Length = 594
Score = 125 (49.1 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 50/194 (25%), Positives = 85/194 (43%)
Query: 53 KRNGYSQGKRRM--NC--RTSNAQ--QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVV 106
+R G + +RR N RT+ + +E RTV+ + Q+V L F + G+V
Sbjct: 205 RRRGTNSPRRRSPPNGADRTTPTELSPEERDARTVFCIQLSQRVRARDLEEFFSSVGKVR 264
Query: 107 DCRI--CGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS---KTAIAPVNP 161
D R+ C A++EF D E AL L+G L P+ V + K + P
Sbjct: 265 DVRLITCNKTKRFKGIAYIEFDDPESVALALGLSGQRLLGVPIMVQHTQAEKNRLQNAAP 324
Query: 162 TFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIA 219
F P+S +Y ++ +T+ ++ FE G++ ++L+ D + S
Sbjct: 325 AFQPKSHTG----PMRLYVGSLHFNITEDMLRGIFEPF-GKIDAIQLIMDTETGRSKGYG 379
Query: 220 FVEFAMAESAIAAL 233
F+ + A+ A AL
Sbjct: 380 FITYHNADDAKKAL 393
Score = 114 (45.2 bits), Expect = 0.00088, P = 0.00088
Identities = 38/111 (34%), Positives = 60/111 (54%)
Query: 161 PTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLL--GDYQHSTRI 218
PT L S +ER+ +RT++C + ++V D++ FF SV G+V+ +RL+ + I
Sbjct: 226 PTEL--SPEERD--ARTVFCIQLSQRVRARDLEEFFSSV-GKVRDVRLITCNKTKRFKGI 280
Query: 219 AFVEFAMAESAIAALNCSGAVLGSLPIRVSPS---KTPVRPRAP--RPPLH 264
A++EF ES AL SG L +PI V + K ++ AP +P H
Sbjct: 281 AYIEFDDPESVALALGLSGQRLLGVPIMVQHTQAEKNRLQNAAPAFQPKSH 331
>UNIPROTKB|F1P1V2 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0019907 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AADN02016569 EMBL:AADN02016570
EMBL:AADN02016571 EMBL:AADN02016572 EMBL:AADN02016573
EMBL:AADN02016574 IPI:IPI00820905 Ensembl:ENSGALT00000022812
ArrayExpress:F1P1V2 Uniprot:F1P1V2
Length = 522
Score = 124 (48.7 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 55/215 (25%), Positives = 92/215 (42%)
Query: 56 GYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN 115
G+ + + Q+ I VYV I ++ E+ + F G + + D
Sbjct: 69 GFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSV 128
Query: 116 SVLR--FAFVEFTDEEGARAALS-LAGTMLGFYPVRV-LPSKTAIAPVNPTFLPRSEDER 171
++ FAFVE+ E A+ AL + MLG ++V PS I P +E+ R
Sbjct: 129 TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEAR 186
Query: 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR--IAFVEFAMAESA 229
+R IY ++ + ++ DIK FE+ G+++ L D F+E+ A+S+
Sbjct: 187 AF-NR-IYVASVHQDLSDDDIKSVFEAF-GKIKSCTLARDPTTGKHKGYGFIEYEKAQSS 243
Query: 230 IAALNCSGAV-LGSLPIRVSPSKTPVRPR-APRPP 262
A++ LG +RV + TP P P P
Sbjct: 244 QDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 278
>UNIPROTKB|F1N238 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0019907 "cyclin-dependent protein
kinase activating kinase holoenzyme complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 IPI:IPI00697616
UniGene:Bt.56130 OMA:CLQQVNG EMBL:DAAA02037460
Ensembl:ENSBTAT00000002882 Uniprot:F1N238
Length = 530
Score = 124 (48.7 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 55/215 (25%), Positives = 92/215 (42%)
Query: 56 GYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN 115
G+ + + Q+ I VYV I ++ E+ + F G + + D
Sbjct: 77 GFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSV 136
Query: 116 SVLR--FAFVEFTDEEGARAALS-LAGTMLGFYPVRV-LPSKTAIAPVNPTFLPRSEDER 171
++ FAFVE+ E A+ AL + MLG ++V PS I P +E+ R
Sbjct: 137 TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEAR 194
Query: 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR--IAFVEFAMAESA 229
+R IY ++ + ++ DIK FE+ G+++ L D F+E+ A+S+
Sbjct: 195 AF-NR-IYVASVHQDLSDDDIKSVFEAF-GKIKSCTLARDPTTGKHKGYGFIEYEKAQSS 251
Query: 230 IAALNCSGAV-LGSLPIRVSPSKTPVRPR-APRPP 262
A++ LG +RV + TP P P P
Sbjct: 252 QDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 286
>UNIPROTKB|Q2HJG2 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000267001 HOVERGEN:HBG055622
OrthoDB:EOG4SQWWP InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:BC105447 IPI:IPI00697616 RefSeq:NP_001039598.1
UniGene:Bt.56130 ProteinModelPortal:Q2HJG2 SMR:Q2HJG2 STRING:Q2HJG2
PRIDE:Q2HJG2 GeneID:512824 KEGG:bta:512824 CTD:22827
InParanoid:Q2HJG2 KO:K12838 NextBio:20870569 Uniprot:Q2HJG2
Length = 530
Score = 124 (48.7 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 55/215 (25%), Positives = 92/215 (42%)
Query: 56 GYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN 115
G+ + + Q+ I VYV I ++ E+ + F G + + D
Sbjct: 77 GFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSV 136
Query: 116 SVLR--FAFVEFTDEEGARAALS-LAGTMLGFYPVRV-LPSKTAIAPVNPTFLPRSEDER 171
++ FAFVE+ E A+ AL + MLG ++V PS I P +E+ R
Sbjct: 137 TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEAR 194
Query: 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR--IAFVEFAMAESA 229
+R IY ++ + ++ DIK FE+ G+++ L D F+E+ A+S+
Sbjct: 195 AF-NR-IYVASVHQDLSDDDIKSVFEAF-GKIKSCTLARDPTTGKHKGYGFIEYEKAQSS 251
Query: 230 IAALNCSGAV-LGSLPIRVSPSKTPVRPR-APRPP 262
A++ LG +RV + TP P P P
Sbjct: 252 QDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 286
>ZFIN|ZDB-GENE-000501-1 [details] [associations]
symbol:celf1 "cugbp, Elav-like family member 1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0045495 "pole plasm"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-000501-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045495
GeneTree:ENSGT00560000076837 EMBL:CR318601 EMBL:BX571680
IPI:IPI00492280 Ensembl:ENSDART00000123170 Uniprot:E7F304
Length = 535
Score = 124 (48.7 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 55/202 (27%), Positives = 88/202 (43%)
Query: 60 GKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD----PN 115
G ++MN + Q ++ ++V I + +E+QL LF G V + + D P
Sbjct: 35 GSKKMNGSLDHPDQPDIDSIKMFVGQIPRTWSEDQLRELFEPYGAVYEINVLRDRSQNPP 94
Query: 116 SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCS 175
FV + + A A + M ++LP + P SE +
Sbjct: 95 QSKGCCFVTYYTRKSALEAQNALHNM------KILPGMHHPIQMKPA---DSEKNNAVED 145
Query: 176 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLL-GDYQHSTRIAFVEFA---MAESAIA 231
R ++ I KK + DI+L F S G+++ R+L G S AFV F MA+SAI
Sbjct: 146 RKLFVGMISKKCNENDIRLMF-SPYGQIEECRILRGPDGLSRGCAFVTFTARQMAQSAIK 204
Query: 232 ALNCSGAVLG-SLPIRVSPSKT 252
+++ S + G S PI V + T
Sbjct: 205 SMHQSQTMEGCSSPIVVKFADT 226
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 123 (48.4 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 44/189 (23%), Positives = 85/189 (44%)
Query: 81 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR--FAFVEFTDEEGARAALS-L 137
V+V D+ + V+ E L + F G+V + ++ D + + FV F +++ A A++ +
Sbjct: 227 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENAIAGM 286
Query: 138 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRSE--DEREMCSRTIYCTNIDKKVTQGDIKLF 195
G +G VR + + N L + + + + ++Y NI ++ T D++
Sbjct: 287 NGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTTDADLRDL 346
Query: 196 FESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAAL-NCSGAVLGSLPIRVSPSKTPV 254
F S G++ +R+ + R AFV + E A A+ +G + +R S +T
Sbjct: 347 F-STYGDIAEVRIF----KTQRYAFVRYEKKECATKAIMEMNGKEMAGNQVRCSWGRTQA 401
Query: 255 RPRAPRPPL 263
P PL
Sbjct: 402 VPNQALNPL 410
>UNIPROTKB|Q9UHX1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
EMBL:CH471162 eggNOG:COG0724 PDB:2KXH PDBsum:2KXH
HOVERGEN:HBG055622 InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827
KO:K12838 EMBL:AF217197 EMBL:AF114818 EMBL:AK292373 EMBL:CR457143
EMBL:BC008875 EMBL:BC009734 EMBL:BC011265 EMBL:BC011979 EMBL:U51586
EMBL:AF190744 IPI:IPI00069750 IPI:IPI00100716 IPI:IPI00788826
IPI:IPI00797595 IPI:IPI00855912 IPI:IPI00856076
RefSeq:NP_001129505.1 RefSeq:NP_001258025.1 RefSeq:NP_001258026.1
RefSeq:NP_001258027.1 RefSeq:NP_001258028.1 RefSeq:NP_001258029.1
RefSeq:NP_055096.2 RefSeq:NP_510965.1 UniGene:Hs.521924 PDB:2DNY
PDB:2KXF PDB:2QFJ PDB:3DXB PDB:3UE2 PDB:3US5 PDB:3UWT PDBsum:2DNY
PDBsum:2KXF PDBsum:2QFJ PDBsum:3DXB PDBsum:3UE2 PDBsum:3US5
PDBsum:3UWT ProteinModelPortal:Q9UHX1 SMR:Q9UHX1 DIP:DIP-34636N
IntAct:Q9UHX1 MINT:MINT-1374433 STRING:Q9UHX1 PhosphoSite:Q9UHX1
DMDM:74761960 PaxDb:Q9UHX1 PRIDE:Q9UHX1 Ensembl:ENST00000313352
Ensembl:ENST00000349157 Ensembl:ENST00000453551
Ensembl:ENST00000456095 Ensembl:ENST00000526683
Ensembl:ENST00000527197 Ensembl:ENST00000563311
Ensembl:ENST00000563654 Ensembl:ENST00000566765
Ensembl:ENST00000567937 Ensembl:ENST00000568960
Ensembl:ENST00000569567 GeneID:22827 KEGG:hsa:22827 UCSC:uc003yzq.3
UCSC:uc003yzr.3 UCSC:uc003yzt.3 GeneCards:GC08M144898
HGNC:HGNC:17042 HPA:HPA045733 MIM:604819 neXtProt:NX_Q9UHX1
PharmGKB:PA162400364 InParanoid:Q9UHX1 OMA:CLQQVNG
EvolutionaryTrace:Q9UHX1 GenomeRNAi:22827 NextBio:43236
ArrayExpress:Q9UHX1 Bgee:Q9UHX1 CleanEx:HS_PUF60
Genevestigator:Q9UHX1 Uniprot:Q9UHX1
Length = 559
Score = 124 (48.7 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 55/215 (25%), Positives = 92/215 (42%)
Query: 56 GYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN 115
G+ + + Q+ I VYV I ++ E+ + F G + + D
Sbjct: 106 GFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSV 165
Query: 116 SVLR--FAFVEFTDEEGARAALS-LAGTMLGFYPVRV-LPSKTAIAPVNPTFLPRSEDER 171
++ FAFVE+ E A+ AL + MLG ++V PS I P +E+ R
Sbjct: 166 TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEAR 223
Query: 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR--IAFVEFAMAESA 229
+R IY ++ + ++ DIK FE+ G+++ L D F+E+ A+S+
Sbjct: 224 AF-NR-IYVASVHQDLSDDDIKSVFEAF-GKIKSCTLARDPTTGKHKGYGFIEYEKAQSS 280
Query: 230 IAALNCSGAV-LGSLPIRVSPSKTPVRPR-APRPP 262
A++ LG +RV + TP P P P
Sbjct: 281 QDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 315
>MGI|MGI:1915209 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1915209 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 GO:GO:0019907 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP
InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827 KO:K12838
OMA:CLQQVNG EMBL:AK149632 EMBL:AK151526 EMBL:AK168789 EMBL:BC010601
IPI:IPI00127174 IPI:IPI00652919 IPI:IPI00857642
RefSeq:NP_001158072.1 RefSeq:NP_082640.2 RefSeq:NP_598452.2
UniGene:Mm.29965 HSSP:Q9UNP9 ProteinModelPortal:Q3UEB3 SMR:Q3UEB3
STRING:Q3UEB3 PhosphoSite:Q3UEB3 PaxDb:Q3UEB3 PRIDE:Q3UEB3
Ensembl:ENSMUST00000002599 Ensembl:ENSMUST00000100527 GeneID:67959
KEGG:mmu:67959 UCSC:uc007wij.2 UCSC:uc007wik.2 UCSC:uc011zup.1
InParanoid:Q3UEB3 NextBio:326074 Bgee:Q3UEB3 CleanEx:MM_PUF60
Genevestigator:Q3UEB3 Uniprot:Q3UEB3
Length = 564
Score = 124 (48.7 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 55/215 (25%), Positives = 92/215 (42%)
Query: 56 GYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN 115
G+ + + Q+ I VYV I ++ E+ + F G + + D
Sbjct: 111 GFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSV 170
Query: 116 SVLR--FAFVEFTDEEGARAALS-LAGTMLGFYPVRV-LPSKTAIAPVNPTFLPRSEDER 171
++ FAFVE+ E A+ AL + MLG ++V PS I P +E+ R
Sbjct: 171 TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEAR 228
Query: 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR--IAFVEFAMAESA 229
+R IY ++ + ++ DIK FE+ G+++ L D F+E+ A+S+
Sbjct: 229 AF-NR-IYVASVHQDLSDDDIKSVFEAF-GKIKSCTLARDPTTGKHKGYGFIEYEKAQSS 285
Query: 230 IAALNCSGAV-LGSLPIRVSPSKTPVRPR-APRPP 262
A++ LG +RV + TP P P P
Sbjct: 286 QDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 320
>RGD|621674 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0019907 "cyclin-dependent protein kinase activating kinase
holoenzyme complex" evidence=IEA;ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:621674 GO:GO:0006915
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0030529 eggNOG:COG0724 GO:GO:0019907
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG HSSP:Q9UNP9 EMBL:AF165892
EMBL:AABR03055594 IPI:IPI00204315 IPI:IPI00780677 UniGene:Rn.96174
ProteinModelPortal:Q9WV25 SMR:Q9WV25 STRING:Q9WV25 PRIDE:Q9WV25
Ensembl:ENSRNOT00000013353 Ensembl:ENSRNOT00000056481
UCSC:RGD:621674 InParanoid:Q9WV25 NextBio:616833
Genevestigator:Q9WV25 Uniprot:Q9WV25
Length = 564
Score = 124 (48.7 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 55/215 (25%), Positives = 92/215 (42%)
Query: 56 GYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN 115
G+ + + Q+ I VYV I ++ E+ + F G + + D
Sbjct: 111 GFGDPLSPLQSMAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSV 170
Query: 116 SVLR--FAFVEFTDEEGARAALS-LAGTMLGFYPVRV-LPSKTAIAPVNPTFLPRSEDER 171
++ FAFVE+ E A+ AL + MLG ++V PS I P +E+ R
Sbjct: 171 TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEAR 228
Query: 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR--IAFVEFAMAESA 229
+R IY ++ + ++ DIK FE+ G+++ L D F+E+ A+S+
Sbjct: 229 AF-NR-IYVASVHQDLSDDDIKSVFEAF-GKIKSCTLARDPTTGKHKGYGFIEYEKAQSS 285
Query: 230 IAALNCSGAV-LGSLPIRVSPSKTPVRPR-APRPP 262
A++ LG +RV + TP P P P
Sbjct: 286 QDAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPATP 320
>UNIPROTKB|I3LVL9 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019907 "cyclin-dependent protein kinase activating
kinase holoenzyme complex" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 OMA:CLQQVNG
Ensembl:ENSSSCT00000029289 Uniprot:I3LVL9
Length = 406
Score = 122 (48.0 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 52/190 (27%), Positives = 85/190 (44%)
Query: 81 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR--FAFVEFTDEEGARAALS-L 137
VYV I ++ E+ + F G + + D ++ FAFVE+ E A+ AL +
Sbjct: 23 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 82
Query: 138 AGTMLGFYPVRV-LPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 196
MLG ++V PS I P +E+ R +R IY ++ + ++ DIK F
Sbjct: 83 NSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEARAF-NR-IYVASVHQDLSDDDIKSVF 138
Query: 197 ESVCGEVQRLRLLGDYQHSTR--IAFVEFAMAESAIAALNCSGAV-LGSLPIRVSPSKTP 253
E+ G+++ L D F+E+ A+S+ A++ LG +RV + TP
Sbjct: 139 EAF-GKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTP 197
Query: 254 VRPR-APRPP 262
P P P
Sbjct: 198 PMPLLTPATP 207
>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
symbol:rbm39a "RNA binding motif protein 39a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
Length = 523
Score = 123 (48.4 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 49/202 (24%), Positives = 86/202 (42%)
Query: 52 QKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRIC 111
+ R+ + + + + N +E RTV+ + ++ L F G+V D RI
Sbjct: 122 RSRSPFKKDRSPVRQPIDNLTPEERDARTVFCMQLAARIRPRDLEEFFSAVGKVRDVRII 181
Query: 112 GDPNSVLR--FAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVN-PTFLPRSE 168
D NS A++EF D A+ L+G L P+ V S+ A N L +
Sbjct: 182 SDRNSRRSKGIAYIEFVDSTSVPLAIGLSGQRLLGVPIIVQASQ---AEKNRAAALANNL 238
Query: 169 DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAMA 226
+ +Y ++ +T+ ++ FE G + ++L+ D + S F+ F+ A
Sbjct: 239 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPF-GRIDSIQLMMDSETGRSKGYGFITFSDA 297
Query: 227 ESAIAALN-CSGAVLGSLPIRV 247
E A AL +G L P++V
Sbjct: 298 ECAKKALEQLNGFELAGRPMKV 319
Score = 113 (44.8 bits), Expect = 0.00095, P = 0.00095
Identities = 31/103 (30%), Positives = 56/103 (54%)
Query: 151 PSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLG 210
P K +PV + +ER+ +RT++C + ++ D++ FF +V G+V+ +R++
Sbjct: 126 PFKKDRSPVRQPIDNLTPEERD--ARTVFCMQLAARIRPRDLEEFFSAV-GKVRDVRIIS 182
Query: 211 DY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSK 251
D + S IA++EF + S A+ SG L +PI V S+
Sbjct: 183 DRNSRRSKGIAYIEFVDSTSVPLAIGLSGQRLLGVPIIVQASQ 225
>FB|FBgn0085383 [details] [associations]
symbol:CG34354 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GeneTree:ENSGT00680000099967
KO:K13201 RefSeq:NP_001097953.1 UniGene:Dm.16369
ProteinModelPortal:A8JPX0 SMR:A8JPX0 EnsemblMetazoa:FBtr0112564
GeneID:5740528 KEGG:dme:Dmel_CG34354 UCSC:CG34354-RA
FlyBase:FBgn0085383 InParanoid:A8JPX0 OMA:KDAFTPF OrthoDB:EOG4FFBJQ
PhylomeDB:A8JPX0 GenomeRNAi:5740528 NextBio:20891566 Bgee:A8JPX0
Uniprot:A8JPX0
Length = 525
Score = 123 (48.4 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 46/200 (23%), Positives = 88/200 (44%)
Query: 52 QKRNGYSQGKRRMNCRTSNAQQDEVIRRT------VYVSDIDQQVTEEQLATLFLTCGQV 105
Q+++ Q +++M+ + QQ V + ++V D+ ++ +QL F G++
Sbjct: 63 QQQHSQQQQQQQMSQQQQQQQQQLVGNNSKPEQFHIFVGDLSAEIETQQLKDAFTPFGEI 122
Query: 106 VDCRICGDPNSVLR--FAFVEFTDEEGARAALS-LAGTMLGFYPVRVL------PSKTAI 156
DCR+ DP ++ + FV F + A A++ + G LG +R P+ A
Sbjct: 123 SDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAMNGQWLGSRSIRTNWATRKPPATKAD 182
Query: 157 APVNPTFLPRSEDEREMCSRTIYCTNIDKKVT---QGDIKLFFESVCGEVQRLRLLGDYQ 213
P ++ + T+YC I+ ++ +I S G +Q +R+ D
Sbjct: 183 MNAKPLTFDEVYNQSSPTNCTVYCGGINGALSGFLNEEILQKTFSPYGTIQEIRVFKDKG 242
Query: 214 HSTRIAFVEFAMAESAIAAL 233
+ AFV F+ E+A A+
Sbjct: 243 Y----AFVRFSTKEAATHAI 258
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 100 (40.3 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 28/73 (38%), Positives = 38/73 (52%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRI-CGDPNSVLR-FAFVEFTDEEGA-RAALS 136
+VYV + Q TEE+L F + GQ+ + RI C R FAF+EF +E A RA
Sbjct: 6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQ 65
Query: 137 LAGTMLGFYPVRV 149
+ G P+RV
Sbjct: 66 MNGAEFNGRPLRV 78
>RGD|1311646 [details] [associations]
symbol:Sart3 "squamous cell carcinoma antigen recognized by
T-cells 3" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
RGD:1311646 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 GO:GO:0006396 EMBL:CH473973
GeneTree:ENSGT00550000074656 InterPro:IPR008669 Pfam:PF05391
CTD:9733 OMA:SQAVMKM OrthoDB:EOG4RXXZG IPI:IPI00371231
RefSeq:NP_001100626.1 UniGene:Rn.101480 Ensembl:ENSRNOT00000000891
GeneID:304582 KEGG:rno:304582 UCSC:RGD:1311646 NextBio:653335
Uniprot:D3ZAS8
Length = 960
Score = 125 (49.1 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 59/220 (26%), Positives = 100/220 (45%)
Query: 52 QKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQ--LATLFLTCGQVVDCR 109
QK S KR M ++ +D V TV+VS++ + E + L LF CG+VV R
Sbjct: 679 QKEKAASL-KRDMPKVAHDSSKDSV---TVFVSNLPYSIEEPEVKLRPLFEACGEVVQIR 734
Query: 110 -ICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTF-LPRS 167
I + + +VEF +E+ A+ AL L + P+ V P NP F + R
Sbjct: 735 PIFSNRGDFRGYCYVEFKEEKSAQQALDLDRKNVEGRPMFVSPCVDKSK--NPDFKMFRY 792
Query: 168 EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVC---GEVQRLRLLGDYQHSTR-IAFVEF 223
E ++ + + T+ ++ E +C G V+ LRL+ + + +A+VE+
Sbjct: 793 STTLE--KHKLFISGLPFSCTKEEL----EGICKAHGTVKDLRLVTNRAGKPKGLAYVEY 846
Query: 224 AM-AESAIAALNCSGAVLGSLPIRVSPSKTPVRPRAPRPP 262
++++ A L G + I+V+ S P R + P P
Sbjct: 847 ENESQASQAVLKMDGMTIKENVIKVAISNPPQR-KVPEKP 885
>DICTYBASE|DDB_G0289337 [details] [associations]
symbol:DDB_G0289337 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0289337 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000139 eggNOG:NOG145324 RefSeq:XP_636266.1
ProteinModelPortal:Q54HN5 EnsemblProtists:DDB0188369 GeneID:8627085
KEGG:ddi:DDB_G0289337 InParanoid:Q54HN5 OMA:MESINIS Uniprot:Q54HN5
Length = 1528
Score = 127 (49.8 bits), Expect = 9.5e-05, P = 9.5e-05
Identities = 45/192 (23%), Positives = 87/192 (45%)
Query: 52 QKRNGYSQGKRRMNCRTSNAQQD-EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRI 110
Q++ Q ++++N QQD E++ + ++ +TE+ L F G + CRI
Sbjct: 738 QQQQAQQQSQQQINQEILEQQQDQELVPYSRIFIICNKSITEKNLEDCFKVYGSIESCRI 797
Query: 111 C--GDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGF----YPVRVLPSKTAIAPVNPTF 163
D N +A++++T A A+ + G +L P+RVL ++ P
Sbjct: 798 VIDKDTNESKGYAYIKYTKTSSAALAIEEMNGKILEMDSSCSPIRVLIAEAKGTKTKPLL 857
Query: 164 LPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFV 221
ED + C +K +T+ ++K F+ G ++ +RL+ + S AF+
Sbjct: 858 SSDPEDHPPNSRLFVVC---NKSLTEQELKNKFKEF-GNLENVRLIREKSTNDSKGCAFI 913
Query: 222 EFAMAESAIAAL 233
+F+ A +A A+
Sbjct: 914 KFSKASTAAIAM 925
>UNIPROTKB|E2RA48 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 CTD:22827 KO:K12838 EMBL:AAEX03008941
RefSeq:XP_857040.1 Ensembl:ENSCAFT00000002168 GeneID:607245
KEGG:cfa:607245 NextBio:20892984 Uniprot:E2RA48
Length = 543
Score = 122 (48.0 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 52/190 (27%), Positives = 85/190 (44%)
Query: 81 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR--FAFVEFTDEEGARAALS-L 137
VYV I ++ E+ + F G + + D ++ FAFVE+ E A+ AL +
Sbjct: 115 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 174
Query: 138 AGTMLGFYPVRV-LPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 196
MLG ++V PS I P +E+ R +R IY ++ + ++ DIK F
Sbjct: 175 NSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEARAF-NR-IYVASVHQDLSDDDIKSVF 230
Query: 197 ESVCGEVQRLRLLGDYQHSTR--IAFVEFAMAESAIAALNCSGAV-LGSLPIRVSPSKTP 253
E+ G+++ L D F+E+ A+S+ A++ LG +RV + TP
Sbjct: 231 EAF-GKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTP 289
Query: 254 VRPR-APRPP 262
P P P
Sbjct: 290 PMPLLTPATP 299
>UNIPROTKB|Q6TY21 [details] [associations]
symbol:Pabpn1l-b "Embryonic polyadenylate-binding protein
2-B" species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 HOVERGEN:HBG107480
GO:GO:0008143 EMBL:AY382837 RefSeq:NP_001084418.1 UniGene:Xl.86989
PDB:2JWN PDBsum:2JWN ProteinModelPortal:Q6TY21 SMR:Q6TY21
GeneID:403372 KEGG:xla:403372 CTD:403372 Xenbase:XB-GENE-1000606
KO:K14396 EvolutionaryTrace:Q6TY21 Uniprot:Q6TY21
Length = 218
Score = 115 (45.5 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 28/88 (31%), Positives = 46/88 (52%)
Query: 167 SEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFA 224
+E+++E+ R++Y N+D T D++ F S CG + R+ +L D H A++EFA
Sbjct: 84 AEEKKEIDKRSVYVGNVDYGSTAQDLEAHFSS-CGSINRITILCDKFSGHPKGYAYIEFA 142
Query: 225 MAESAIAALNCSGAVLGSLPIRVSPSKT 252
S AA+ V I+V P +T
Sbjct: 143 ERNSVDAAVAMDETVFRGRTIKVLPKRT 170
Score = 111 (44.1 bits), Expect = 0.00029, P = 0.00029
Identities = 31/124 (25%), Positives = 62/124 (50%)
Query: 45 CLFNTAFQKRNG-YSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCG 103
C+ T + G Y++G + S ++ E+ +R+VYV ++D T + L F +CG
Sbjct: 61 CMQTTHSKMTAGAYTEGPPQP---LSAEEKKEIDKRSVYVGNVDYGSTAQDLEAHFSSCG 117
Query: 104 QV----VDC-RICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAP 158
+ + C + G P +A++EF + AA+++ T+ ++VLP +T +
Sbjct: 118 SINRITILCDKFSGHPKG---YAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTNMPG 174
Query: 159 VNPT 162
++ T
Sbjct: 175 ISST 178
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 124 (48.7 bits), Expect = 0.00011, P = 0.00011
Identities = 47/176 (26%), Positives = 81/176 (46%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSL 137
++YV D+++ VTE L +F T G V R+C D L +A+V + + A AL
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 138 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFE 197
L + ++ P++ + +P+ R+ + I+ N+DK + D K F+
Sbjct: 77 ----LNYTNIKGQPARLMWSHRDPSL-------RKSGTGNIFVKNLDKSI---DNKALFD 122
Query: 198 --SVCGEVQRLRLLGD-YQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 249
S+ G + ++ D + S FV + ESA A+ +G LGS + V P
Sbjct: 123 TFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGP 178
Score = 118 (46.6 bits), Expect = 0.00052, P = 0.00052
Identities = 42/161 (26%), Positives = 75/161 (46%)
Query: 81 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAALS-LA 138
++V ++D+ + + L F G ++ C++ D + + FV + DEE A+ A+ +
Sbjct: 106 IFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVN 165
Query: 139 GTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRT-IYCTNIDKKVTQGDIKLFFE 197
G LG SK V P F+ +SE T +Y N VT+ ++ F
Sbjct: 166 GVQLG--------SKNVY--VGP-FIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFN 214
Query: 198 SVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAAL-NCSG 237
GE+ + + D ++ + F+ +A AESA A+ N +G
Sbjct: 215 PY-GEITSMIVKMDNKNR-KFCFINYADAESAKNAMDNLNG 253
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 124 (48.7 bits), Expect = 0.00011, P = 0.00011
Identities = 47/176 (26%), Positives = 81/176 (46%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSL 137
++YV D+++ VTE L +F T G V R+C D L +A+V + + A AL
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 138 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFE 197
L + ++ P++ + +P+ R+ + I+ N+DK + D K F+
Sbjct: 77 ----LNYTNIKGQPARLMWSHRDPSL-------RKSGTGNIFVKNLDKSI---DNKALFD 122
Query: 198 --SVCGEVQRLRLLGD-YQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 249
S+ G + ++ D + S FV + ESA A+ +G LGS + V P
Sbjct: 123 TFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGP 178
Score = 118 (46.6 bits), Expect = 0.00052, P = 0.00052
Identities = 42/161 (26%), Positives = 75/161 (46%)
Query: 81 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAALS-LA 138
++V ++D+ + + L F G ++ C++ D + + FV + DEE A+ A+ +
Sbjct: 106 IFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVN 165
Query: 139 GTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRT-IYCTNIDKKVTQGDIKLFFE 197
G LG SK V P F+ +SE T +Y N VT+ ++ F
Sbjct: 166 GVQLG--------SKNVY--VGP-FIKKSERATNDTKFTNLYVKNFPDSVTETHLRQLFN 214
Query: 198 SVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAAL-NCSG 237
GE+ + + D ++ + F+ +A AESA A+ N +G
Sbjct: 215 PY-GEITSMIVKMDNKNR-KFCFINYADAESAKNAMDNLNG 253
>TAIR|locus:2831834 [details] [associations]
symbol:AT5G03580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00525082 RefSeq:NP_195978.1 UniGene:At.65484
ProteinModelPortal:F4KGN7 SMR:F4KGN7 PRIDE:F4KGN7
EnsemblPlants:AT5G03580.1 GeneID:831785 KEGG:ath:AT5G03580
OMA:DNHGSSS PhylomeDB:F4KGN7 Uniprot:F4KGN7
Length = 101
Score = 98 (39.6 bits), Expect = 0.00012, P = 0.00012
Identities = 23/66 (34%), Positives = 39/66 (59%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGA-RAALSL 137
++Y++++D QV+EE L +F G+V+ + D R FAF+EF + A RA L +
Sbjct: 18 SLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAGRAMLHM 77
Query: 138 AGTMLG 143
G ++G
Sbjct: 78 DGRLIG 83
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 118 (46.6 bits), Expect = 0.00012, P = 0.00012
Identities = 57/207 (27%), Positives = 96/207 (46%)
Query: 55 NGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP 114
NGY +CR D++ R + V+ + Q +T+E+L +LF + G+V ++ D
Sbjct: 3 NGYEDHMAE-DCR------DDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDK 55
Query: 115 --NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFL-PRSEDER 171
L + FV + + A A+S T+ G +R L SKT + ++ P SE +
Sbjct: 56 VAGHSLGYGFVNYVTAKDAERAIS---TLNG---LR-LQSKT----IKVSYARPSSEVIK 104
Query: 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH--STRIAFVEF---AMA 226
+ +Y + + + +TQ D++ F S G + R+L D S +AF+ F + A
Sbjct: 105 DA---NLYISGLPRTMTQKDVEDMF-SRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEA 160
Query: 227 ESAIAALNCSGAVLGSLPIRVSPSKTP 253
E AI + N S PI V + P
Sbjct: 161 EEAITSFNGHKPPGSSEPITVKFAANP 187
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 118 (46.6 bits), Expect = 0.00012, P = 0.00012
Identities = 57/207 (27%), Positives = 96/207 (46%)
Query: 55 NGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP 114
NGY +CR D++ R + V+ + Q +T+E+L +LF + G+V ++ D
Sbjct: 3 NGYEDHMAE-DCR------DDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDK 55
Query: 115 --NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFL-PRSEDER 171
L + FV + + A A+S T+ G +R L SKT + ++ P SE +
Sbjct: 56 VAGHSLGYGFVNYVTAKDAERAIS---TLNG---LR-LQSKT----IKVSYARPSSEVIK 104
Query: 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH--STRIAFVEF---AMA 226
+ +Y + + + +TQ D++ F S G + R+L D S +AF+ F + A
Sbjct: 105 DA---NLYISGLPRTMTQKDVEDMF-SRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEA 160
Query: 227 ESAIAALNCSGAVLGSLPIRVSPSKTP 253
E AI + N S PI V + P
Sbjct: 161 EEAITSFNGHKPPGSSEPITVKFAANP 187
>MGI|MGI:1858230 [details] [associations]
symbol:Sart3 "squamous cell carcinoma antigen recognized by
T cells 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
MGI:MGI:1858230 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 GeneTree:ENSGT00550000074656 InterPro:IPR008669
Pfam:PF05391 CTD:9733 HOGENOM:HOG000063708 HOVERGEN:HBG053888
OMA:SQAVMKM OrthoDB:EOG4RXXZG ChiTaRS:SART3 EMBL:AF172722
EMBL:AK053828 EMBL:AK129067 EMBL:AK086398 EMBL:BC036350
EMBL:BC057156 IPI:IPI00458854 IPI:IPI00471258 RefSeq:NP_058622.1
UniGene:Mm.29594 ProteinModelPortal:Q9JLI8 SMR:Q9JLI8 STRING:Q9JLI8
PhosphoSite:Q9JLI8 PaxDb:Q9JLI8 PRIDE:Q9JLI8
Ensembl:ENSMUST00000019118 GeneID:53890 KEGG:mmu:53890
UCSC:uc008yym.1 InParanoid:Q9JLI8 NextBio:310779 Bgee:Q9JLI8
Genevestigator:Q9JLI8 GermOnline:ENSMUSG00000018974 Uniprot:Q9JLI8
Length = 962
Score = 124 (48.7 bits), Expect = 0.00012, P = 0.00012
Identities = 58/220 (26%), Positives = 101/220 (45%)
Query: 52 QKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQ--LATLFLTCGQVVDCR 109
QK S KR M ++ +D V TV+VS++ + E + L LF CG+VV R
Sbjct: 681 QKEKAASL-KRDMPKVAHDSSKDSV---TVFVSNLPYSIEEPEVKLRPLFEVCGEVVQIR 736
Query: 110 -ICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTF-LPRS 167
I + + +VEF +E+ A+ AL L ++ P+ V P NP F + R
Sbjct: 737 PIFSNRGDFRGYCYVEFGEEKSAQQALELDRKIVEGRPMFVSPCVDKSK--NPDFKVFRY 794
Query: 168 EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVC---GEVQRLRLLGDYQHSTR-IAFVEF 223
E ++ + + T+ ++ E +C G V+ LRL+ + + +A+VE+
Sbjct: 795 STTLE--KHKLFISGLPFSCTKEEL----EDICKAHGTVKDLRLVTNRAGKPKGLAYVEY 848
Query: 224 AM-AESAIAALNCSGAVLGSLPIRVSPSKTPVRPRAPRPP 262
++++ A + G + I+V+ S P R + P P
Sbjct: 849 ENESQASQAVMKMDGMTIRENVIKVAISNPPQR-KVPEKP 887
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 119 (46.9 bits), Expect = 0.00012, P = 0.00012
Identities = 43/183 (23%), Positives = 78/183 (42%)
Query: 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGA 131
+D V+V +I + +E+L LF G ++ D + + F FV + E A
Sbjct: 193 RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAA 252
Query: 132 -RAALSLAGTMLG---FYPVRVLPSKTAIAPVNPTFLP-RSEDEREMCSRTIYCTNIDKK 186
+A L L G + Y R +A + F R +++ IY N+D+
Sbjct: 253 QKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDET 312
Query: 187 VTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPI 245
+ +K F S G + R +++ + V F+ E A A++ +G ++GS P+
Sbjct: 313 INDEKLKEEFSSF-GSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPL 371
Query: 246 RVS 248
V+
Sbjct: 372 HVT 374
>ZFIN|ZDB-GENE-030131-2891 [details] [associations]
symbol:puf60a "poly-U binding splicing factor a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00361
ZFIN:ZDB-GENE-030131-2891 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 EMBL:BX323559 IPI:IPI00919560
Ensembl:ENSDART00000056645 ArrayExpress:F1QZ57 Bgee:F1QZ57
Uniprot:F1QZ57
Length = 538
Score = 121 (47.7 bits), Expect = 0.00012, P = 0.00012
Identities = 53/190 (27%), Positives = 83/190 (43%)
Query: 81 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR--FAFVEFTDEEGARAALS-L 137
VYV I ++ E+ + F G + + D ++ FAFVE+ E A+ AL +
Sbjct: 95 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTLKHKGFAFVEYEVPEAAQLALEQM 154
Query: 138 AGTMLGFYPVRV-LPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 196
MLG ++V PS I P +E+ R +R IY ++ ++ DIK F
Sbjct: 155 NSVMLGGRNIKVGRPSN--IGQAQPIIDQLAEEARAF-NR-IYVASVHPDLSDDDIKSVF 210
Query: 197 ESVCGEVQRLRLLGDYQHSTR--IAFVEFAMAESAIAALNCSGAV-LGSLPIRVSPSKTP 253
E+ G ++ L D F+E+ A+SA A++ LG +RV + TP
Sbjct: 211 EAF-GRIKSCSLARDPTTGKHKGYGFIEYDKAQSAQDAVSSMNLFDLGGQYLRVGKAVTP 269
Query: 254 VRPR-APRPP 262
P P P
Sbjct: 270 PMPLLTPATP 279
>DICTYBASE|DDB_G0283687 [details] [associations]
symbol:DDB_G0283687 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0283687 EMBL:AAFI02000056 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K13091
RefSeq:XP_638966.1 ProteinModelPortal:Q54QQ7
EnsemblProtists:DDB0233350 GeneID:8624212 KEGG:ddi:DDB_G0283687
InParanoid:Q54QQ7 OMA:VDINIDE Uniprot:Q54QQ7
Length = 727
Score = 122 (48.0 bits), Expect = 0.00014, P = 0.00014
Identities = 43/162 (26%), Positives = 77/162 (47%)
Query: 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGA 131
+E +RTV+VS + Q + E+ L+ LF G V++ R+ D + +VEF+ +E
Sbjct: 261 EESDQRTVFVSKLSQNIVEKDLSDLFSQAGTVLNVRLITDKVTKRMKGVGYVEFSQKEMV 320
Query: 132 RAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGD 191
A++L+G++L + V +I P S SR IY I V +
Sbjct: 321 DKAIALSGSVLDGQQILV----HSIQPEKKVIKSNSTGSSGGESR-IYVGYIHLSVAEEQ 375
Query: 192 IKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAAL 233
I++ F+ G++ + + ++ AF++F ESA A+
Sbjct: 376 IRVIFQPY-GDIDFINI-HTKPGISKYAFIQFKTQESAKRAI 415
>TAIR|locus:2065190 [details] [associations]
symbol:AT2G47310 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:2.20.70.10 SUPFAM:SSF51045
EMBL:BT015132 EMBL:BT015799 EMBL:AK229352 IPI:IPI00531580
RefSeq:NP_850472.1 UniGene:At.36378 ProteinModelPortal:Q6AWW6
SMR:Q6AWW6 PRIDE:Q6AWW6 EnsemblPlants:AT2G47310.1 GeneID:819344
KEGG:ath:AT2G47310 TAIR:At2g47310 HOGENOM:HOG000084673
InParanoid:Q6AWW6 OMA:RERIGFA PhylomeDB:Q6AWW6
ProtClustDB:CLSN2918289 Genevestigator:Q6AWW6 Uniprot:Q6AWW6
Length = 512
Score = 120 (47.3 bits), Expect = 0.00015, P = 0.00015
Identities = 60/214 (28%), Positives = 94/214 (43%)
Query: 56 GYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN 115
G S KRR T NA D I + +YV+ I + TE + +F G V + + D
Sbjct: 90 GSSLRKRRSQSATDNA--DGSIAK-LYVAPISKTATEYDIRQVFEKYGNVTEIILPKDKM 146
Query: 116 SVLR--FAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPT---FLP-RSED 169
+ R + F+++ E AA++ F P +LP K A F P + D
Sbjct: 147 TGERAAYCFIKYKKVEEGNAAIAALTEQFTF-PGEMLPVKVRFAEAERERIGFAPVQLPD 205
Query: 170 EREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRL-LGDYQHSTRIAFVEFAMAES 228
++ R C N K+ T+ ++ F S G ++ + + L D + AFV+F+ E
Sbjct: 206 NPKLYVR---CLN--KQTTKMEVNEVF-SRYGIIEDIYMALDDMKICRGYAFVQFSCKEM 259
Query: 229 AIAALNCSGAVLGSLPIRVSPSKTPVRPRAPRPP 262
A+AA+ A+ G IR S VR P+ P
Sbjct: 260 ALAAIK---ALNGLFTIRGSDQPLIVRFADPKKP 290
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 97 (39.2 bits), Expect = 0.00015, P = 0.00015
Identities = 28/73 (38%), Positives = 38/73 (52%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGA-RAALS 136
+VYV ++ Q TEE++ F G V + RI D + FAFVEF++E GA RA
Sbjct: 7 SVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQ 66
Query: 137 LAGTMLGFYPVRV 149
L G +RV
Sbjct: 67 LNGVAFNGRNLRV 79
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 117 (46.2 bits), Expect = 0.00016, P = 0.00016
Identities = 51/189 (26%), Positives = 92/189 (48%)
Query: 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEG 130
+D++ R + V+ + Q +T+++L +LF + G+V ++ D L + FV + + +
Sbjct: 14 RDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKD 73
Query: 131 ARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFL-PRSEDEREMCSRTIYCTNIDKKVTQ 189
A A++ T+ G +R L SKT + +F P SE ++ +Y + + + +TQ
Sbjct: 74 AERAIN---TLNG---LR-LQSKT----IKVSFARPSSETIKDA---NLYISGLPRTMTQ 119
Query: 190 GDIKLFFESVCGEVQRLRLLGDYQH--STRIAFVEF---AMAESAIAALNCSGAVLGSLP 244
D++ F G + R+L D S +AF+ F + AE AIA+ N S P
Sbjct: 120 KDVEDMFLPF-GHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEP 178
Query: 245 IRVSPSKTP 253
I V + P
Sbjct: 179 ITVKFAANP 187
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 117 (46.2 bits), Expect = 0.00016, P = 0.00016
Identities = 51/188 (27%), Positives = 90/188 (47%)
Query: 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEG 130
+D++ R + V+ + Q +T+++L +LF + G+V ++ D L + FV + + +
Sbjct: 14 RDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKD 73
Query: 131 ARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQG 190
A A++ T+ G +R L SKT V P SE ++ +Y + + + +TQ
Sbjct: 74 AERAIN---TLNG---LR-LQSKTIKVSVAR---PSSESIKDA---NLYISGLPRTMTQK 120
Query: 191 DIKLFFESVCGEVQRLRLLGDYQH--STRIAFVEF---AMAESAIAALNCSGAVLGSLPI 245
D++ F G + R+L D S +AF+ F + AE AIA+ N S PI
Sbjct: 121 DVEDMFLPF-GRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGHKPPGSSEPI 179
Query: 246 RVSPSKTP 253
V + P
Sbjct: 180 TVKFAANP 187
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 121 (47.7 bits), Expect = 0.00016, P = 0.00016
Identities = 48/160 (30%), Positives = 71/160 (44%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-VLRFAFVEFTDEEGA-RAALSL 137
++Y D+D +VTE L LF VV R+C D N L +A++ F++ A RA +L
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 138 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFE 197
T L P+R++ S R R I+ N+D + D K FE
Sbjct: 110 NYTPLFDRPIRIMLSN------------RDPSTRLSGKGNIFIKNLDASI---DNKALFE 154
Query: 198 --SVCGEVQRLRLLGDYQ-HSTRIAFVEFAMAESAIAALN 234
S G + ++ D S FV+F ESA AA++
Sbjct: 155 TFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAID 194
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 118 (46.6 bits), Expect = 0.00016, P = 0.00016
Identities = 53/209 (25%), Positives = 96/209 (45%)
Query: 55 NGYSQGKRRMN-CRTS-NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICG 112
N + G +N C + ++ E + + V+ + Q +T+E+L +LF + G++ C++
Sbjct: 41 NNTAHGSNAINNCSSPIDSGNTEDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVR 100
Query: 113 DP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFL-PRSED 169
D L + FV + D + A A++ T+ G +R L +KT + ++ P S
Sbjct: 101 DKITGQSLGYGFVNYVDPKDAEKAIN---TLNG---LR-LQTKT----IKVSYARPSSAS 149
Query: 170 EREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH--STRIAFVEFAM-- 225
R+ +Y + + K +TQ +++ F S G + R+L D S + F+ F
Sbjct: 150 IRDA---NLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGMSRGVGFIRFDKRI 205
Query: 226 -AESAIAALNCSGAVLGSLPIRVSPSKTP 253
AE AI LN + PI V + P
Sbjct: 206 EAEEAIKGLNGQKPPAATEPITVKFANNP 234
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 120 (47.3 bits), Expect = 0.00017, P = 0.00017
Identities = 48/185 (25%), Positives = 78/185 (42%)
Query: 67 RTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR--FAFVE 124
R+ +DE RRT++V + ++ ++L F G V + +I D S +VE
Sbjct: 162 RSPELNEDERDRRTIFVQQLAARLRTKELIAFFEKVGPVKEAQIVKDRVSGRSKGVGYVE 221
Query: 125 FTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNID 184
F DE A+ L G L P+ ++ S ++ +Y NI
Sbjct: 222 FKDESSVAPAIQLTGQKLLGIPIIAQLTEAEKNRQARNSEASSGNKHSAPFHRLYVGNIH 281
Query: 185 KKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAALN-CSGAVLGS 242
+ + D++ FE GE++ ++L D +R FV+F A AL +G LG
Sbjct: 282 FSIDENDLQSVFEPF-GELEFVQLQKDETGRSRGYGFVQFRDPNQAREALEKMNGYDLGG 340
Query: 243 LPIRV 247
IRV
Sbjct: 341 RAIRV 345
>MGI|MGI:1859158 [details] [associations]
symbol:Pabpn1 "poly(A) binding protein, nuclear 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
[GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:U93050 MGI:MGI:1859158 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0030529 HOVERGEN:HBG107480 GO:GO:0008143 GO:GO:0016973
KO:K14396 HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517
CTD:8106 EMBL:AK032172 EMBL:BC055866 IPI:IPI00136169
IPI:IPI00410858 RefSeq:NP_062275.1 UniGene:Mm.7723
ProteinModelPortal:Q8CCS6 SMR:Q8CCS6 IntAct:Q8CCS6 STRING:Q8CCS6
PhosphoSite:Q8CCS6 PRIDE:Q8CCS6 Ensembl:ENSMUST00000022808
Ensembl:ENSMUST00000116476 GeneID:54196 KEGG:mmu:54196
UCSC:uc007txg.2 UCSC:uc007txh.2 InParanoid:Q8CCS6 ChiTaRS:PABPN1
NextBio:311042 Bgee:Q8CCS6 CleanEx:MM_PABPN1 Genevestigator:Q8CCS6
GermOnline:ENSMUSG00000022198 Uniprot:Q8CCS6
Length = 302
Score = 116 (45.9 bits), Expect = 0.00017, P = 0.00017
Identities = 31/100 (31%), Positives = 52/100 (52%)
Query: 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 129
E R++YV ++D T E+L F CG V + C + G P FA++EF+D+E
Sbjct: 164 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKE 220
Query: 130 GARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTF--LPRS 167
R +L+L ++ ++V+P +T ++ T PRS
Sbjct: 221 SVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRS 260
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 118 (46.6 bits), Expect = 0.00018, P = 0.00018
Identities = 50/206 (24%), Positives = 90/206 (43%)
Query: 68 TSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTC------GQVVDCRICGDPNSVLRFA 121
+S ++D+ T++V D+ VT+ L F +VV R+ G +
Sbjct: 144 SSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKG---YG 200
Query: 122 FVEFTDE-EGARAALSLAGTMLGFYPVRVLP--SKTAIAPVNPTFLPRSED---EREMCS 175
FV F+DE E RA + G P+R+ P SK + ++ + + + +
Sbjct: 201 FVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNN 260
Query: 176 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNC 235
T++ +D VT +K F S GE+ +++ + + F E + AE A+ LN
Sbjct: 261 TTVFVGGLDASVTDDHLKNVF-SQYGEIVHVKIPAG-KRCGFVQFSEKSCAEEALRMLN- 317
Query: 236 SGAVLGSLPIRVSPSKTPVRPRAPRP 261
G LG +R+S ++P ++ P
Sbjct: 318 -GVQLGGTTVRLSWGRSPSNKQSGDP 342
>GENEDB_PFALCIPARUM|MAL13P1.120 [details] [associations]
symbol:MAL13P1.120 "splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 122 (48.0 bits), Expect = 0.00018, P = 0.00018
Identities = 33/104 (31%), Positives = 55/104 (52%)
Query: 166 RSEDEREMCSR---TIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH--STRIAF 220
R ++E E R T+ N+D K + DI FF V G+V+ ++ + D + S +A+
Sbjct: 474 RLKEEMEEAKRDDLTVLVLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSKGVAY 533
Query: 221 VEFAMAESAIAALNCSGAVLGSLPIRVSPSKTPVRPRAPRPPLH 264
VEF E+ I AL +G +L + PI++ S+ + RA + H
Sbjct: 534 VEFYTQEAVIKALAANGMMLKNRPIKIQSSQAE-KNRAAKAAKH 576
>UNIPROTKB|Q8IE99 [details] [associations]
symbol:MAL13P1.120 "Splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 122 (48.0 bits), Expect = 0.00018, P = 0.00018
Identities = 33/104 (31%), Positives = 55/104 (52%)
Query: 166 RSEDEREMCSR---TIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH--STRIAF 220
R ++E E R T+ N+D K + DI FF V G+V+ ++ + D + S +A+
Sbjct: 474 RLKEEMEEAKRDDLTVLVLNLDLKADERDIYEFFSEVAGKVRDIQCIKDQRSGKSKGVAY 533
Query: 221 VEFAMAESAIAALNCSGAVLGSLPIRVSPSKTPVRPRAPRPPLH 264
VEF E+ I AL +G +L + PI++ S+ + RA + H
Sbjct: 534 VEFYTQEAVIKALAANGMMLKNRPIKIQSSQAE-KNRAAKAAKH 576
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 117 (46.2 bits), Expect = 0.00020, P = 0.00020
Identities = 52/192 (27%), Positives = 86/192 (44%)
Query: 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 132
+D+ RT+YV ++ + VTE + LF G C++ + S + FVEF + A
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAA 62
Query: 133 AALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDI 192
AAL+ M G R + K VN P S+ + ++ ++ ++T DI
Sbjct: 63 AALA---AMNG----RKILGKEV--KVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDI 113
Query: 193 KLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAM---AESAIAALNCSGAVLGSLPIRV 247
K F G++ R++ D S FV F AE+AI ++ G LG IR
Sbjct: 114 KSAFAPF-GKISDARVVKDMATGKSKGYGFVSFYNKLDAENAI--VHMGGQWLGGRQIRT 170
Query: 248 S-PSKTPVRPRA 258
+ ++ P P++
Sbjct: 171 NWATRKPPAPKS 182
>SGD|S000005846 [details] [associations]
symbol:HSH49 "U2-snRNP associated splicing factor"
species:4932 "Saccharomyces cerevisiae" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005686 "U2 snRNP" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP;IPI] [GO:0071004 "U2-type
prespliceosome" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;IDA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000005846 EMBL:BK006948 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0000398 GO:GO:0005686 GO:GO:0071004 EMBL:X90565
GeneTree:ENSGT00690000101901 EMBL:Z75227 EMBL:AY558437 PIR:S58329
RefSeq:NP_014964.1 ProteinModelPortal:Q99181 SMR:Q99181
DIP:DIP-930N IntAct:Q99181 MINT:MINT-391267 STRING:Q99181
PaxDb:Q99181 PeptideAtlas:Q99181 EnsemblFungi:YOR319W GeneID:854497
KEGG:sce:YOR319W CYGD:YOR319w eggNOG:NOG282907 HOGENOM:HOG000200535
KO:K12831 OMA:QEATVYL OrthoDB:EOG4Q886Z NextBio:976831
Genevestigator:Q99181 GermOnline:YOR319W Uniprot:Q99181
Length = 213
Score = 112 (44.5 bits), Expect = 0.00020, P = 0.00020
Identities = 43/164 (26%), Positives = 76/164 (46%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR----FAFVEFTDEEGARAAL 135
TVYV +ID ++T+EQL LF+ V+ RI + VL+ +AF+EF ++ A+ A+
Sbjct: 10 TVYVGNIDPRITKEQLYELFIQINPVL--RIKYPKDKVLQAYQGYAFIEFYNQGDAQYAI 67
Query: 136 SLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCS--RTIYCTNIDKKVTQGD-I 192
+ + Y R++ + T LP S ++M ++ N+ + +
Sbjct: 68 KIMNNTVRLYD-RLIKVRQVTNSTGTTNLP-SNISKDMILPIAKLFIKNLADSIDSDQLV 125
Query: 193 KLF--FESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN 234
K+F F + E + L + F +F A+ AI +LN
Sbjct: 126 KIFNKFGKLIREPEIFYLSNGKLKCAYVYFEDFEKADLAIKSLN 169
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 117 (46.2 bits), Expect = 0.00021, P = 0.00021
Identities = 52/192 (27%), Positives = 86/192 (44%)
Query: 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 132
+D+ RT+YV ++ + VTE + LF G C++ + S + FVEF + A
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAA 62
Query: 133 AALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDI 192
AAL+ M G R + K VN P S+ + ++ ++ ++T DI
Sbjct: 63 AALA---AMNG----RKILGKEV--KVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDI 113
Query: 193 KLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAM---AESAIAALNCSGAVLGSLPIRV 247
K F G++ R++ D S FV F AE+AI ++ G LG IR
Sbjct: 114 KSAFAPF-GKISDARVVKDMATGKSKGYGFVSFYNKLDAENAI--VHMGGQWLGGRQIRT 170
Query: 248 S-PSKTPVRPRA 258
+ ++ P P++
Sbjct: 171 NWATRKPPAPKS 182
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 112 (44.5 bits), Expect = 0.00021, P = 0.00021
Identities = 50/194 (25%), Positives = 86/194 (44%)
Query: 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 132
+DE+ +T+YV ++ + VTE + LF G +C++ D + FVEF + A
Sbjct: 2 EDEM-PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA 60
Query: 133 AALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS-EDEREMCSRTIYCTNIDKKVTQG 190
AAL+ + G + V+V + T + T +R ++ ++ ++T
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 191 DIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAM---AESAIAALNCSGAVLGSLPI 245
DIK F G + R++ D S FV F AE+AI + G LG I
Sbjct: 121 DIKAAFAPF-GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG--GQWLGGRQI 177
Query: 246 RVS-PSKTPVRPRA 258
R + ++ P P++
Sbjct: 178 RTNWATRKPPAPKS 191
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 120 (47.3 bits), Expect = 0.00021, P = 0.00021
Identities = 46/173 (26%), Positives = 82/173 (47%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTD-EEGARAALS 136
++YV ++D VTE L LF + G V R+C D L +A+V F + E+G +A
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 137 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 196
L T++ P R++ S+ +P+ R+M + ++ N+D + + F
Sbjct: 141 LNYTLIKGRPCRIMWSQR-----DPSL-------RKMGTGNVFIKNLDPAIDNKALHDTF 188
Query: 197 ESVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAAL-NCSGAVLGSLPIRV 247
S G++ ++ D + + FV F ESA AA+ + +G +L + V
Sbjct: 189 -SAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYV 240
Score = 114 (45.2 bits), Expect = 0.0010, P = 0.0010
Identities = 44/177 (24%), Positives = 77/177 (43%)
Query: 66 CRTSNAQQDEVIRR----TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRF 120
CR +Q+D +R+ V++ ++D + + L F G+++ C++ D + +
Sbjct: 151 CRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGY 210
Query: 121 AFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPR-SEDEREMCSRT-I 178
FV F E A AA+ ML L K + + R S+ E + T +
Sbjct: 211 GFVHFDSVESANAAIEHVNGML-------LNDKKVYVGHHVSRRERQSKVEALKANFTNV 263
Query: 179 YCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAALN 234
Y N+D ++T+ + F GE+ L L+ D R FV +A E A A++
Sbjct: 264 YIKNLDTEITEQEFSDLFGQF-GEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVD 319
>GENEDB_PFALCIPARUM|PFF0300w [details] [associations]
symbol:PFF0300w "RNA-binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL844505 RefSeq:XP_966051.1
ProteinModelPortal:C6KSQ9 EnsemblProtists:PFF0300w:mRNA
GeneID:3885781 KEGG:pfa:PFF0300w EuPathDB:PlasmoDB:PF3D7_0606100
HOGENOM:HOG000281446 ProtClustDB:CLSZ2497377 Uniprot:C6KSQ9
Length = 582
Score = 118 (46.6 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 30/99 (30%), Positives = 54/99 (54%)
Query: 52 QKRNGYSQGKRRMNCRTS-NAQQD--EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDC 108
QK+ Q KR ++ + S N + + +V + VY+ +I ++ EE + F G
Sbjct: 124 QKQVISEQKKRLVDFQNSLNEKNNKFDVFSKIVYMENIPEKYGEEDIKAFFQNVGNTTSY 183
Query: 109 RICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPV 147
++ + + AFVEF +EE A+AAL+L+GT +G + +
Sbjct: 184 KLQYNEQKKVHTAFVEFKNEEHAKAALNLSGTKVGLHEI 222
Score = 115 (45.5 bits), Expect = 0.00066, P = 0.00066
Identities = 29/78 (37%), Positives = 42/78 (53%)
Query: 164 LPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEF 223
L ++ ++ S+ +Y NI +K + DIK FF++V G +L + Q AFVEF
Sbjct: 142 LNEKNNKFDVFSKIVYMENIPEKYGEEDIKAFFQNV-GNTTSYKLQYNEQKKVHTAFVEF 200
Query: 224 AMAESAIAALNCSGAVLG 241
E A AALN SG +G
Sbjct: 201 KNEEHAKAALNLSGTKVG 218
Score = 41 (19.5 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGE 202
E+C R Y DK + + + + + GE
Sbjct: 221 EICIRDAYSLINDKDILKNNFSFYSNNTTGE 251
>UNIPROTKB|F1MTN4 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000001517 EMBL:DAAA02028043 IPI:IPI00837600
Ensembl:ENSBTAT00000047156 ArrayExpress:F1MTN4 Uniprot:F1MTN4
Length = 275
Score = 114 (45.2 bits), Expect = 0.00024, P = 0.00024
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 129
E R++YV ++D T E+L F CG V + C + G P FA++EF+D+E
Sbjct: 137 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKE 193
Query: 130 GARAALSLAGTMLGFYPVRVLPSKT 154
R +L+L ++ ++V+P +T
Sbjct: 194 SVRTSLALDESLFRGRQIKVIPKRT 218
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 116 (45.9 bits), Expect = 0.00025, P = 0.00025
Identities = 38/175 (21%), Positives = 80/175 (45%)
Query: 81 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVL-RFAFVEFTDEEGARAALS-LA 138
VY+ + + +E L ++F GQ + ++ D + RF FV F + A+ A+ +
Sbjct: 192 VYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAAKNAVEDMN 251
Query: 139 GTMLGFYPVRVLPSKTAI---APVNPTFLPRSEDE-REMCSRTIYCTNIDKKVTQGDIKL 194
G + + V ++ + A + F ++ R + +Y N+D + ++
Sbjct: 252 GRDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTIDDETLRK 311
Query: 195 FFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAAL-NCSGAVLGSLPIRVS 248
F SV G + R++++ + S + F E+A A+ +G +LGS P+ ++
Sbjct: 312 EF-SVFGSICRVKVMQEAGQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPLNIA 365
>UNIPROTKB|E2R8F6 [details] [associations]
symbol:CELF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA] [GO:0031369 "translation initiation factor binding"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
OMA:PTLYNQS EMBL:AAEX03011483 ProteinModelPortal:E2R8F6
Ensembl:ENSCAFT00000013438 Uniprot:E2R8F6
Length = 513
Score = 118 (46.6 bits), Expect = 0.00025, P = 0.00025
Identities = 53/200 (26%), Positives = 90/200 (45%)
Query: 62 RRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD----PNSV 117
++MN + Q ++ ++V + + +E+ L LF G V + + D P
Sbjct: 26 KKMNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQS 85
Query: 118 LRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRT 177
FV F +AAL + + ++VLP + P SE + R
Sbjct: 86 KGCCFVTFYTR---KAALEAQNAL---HNMKVLPGMHHPIQMKPA---DSEKNNAVEDRK 136
Query: 178 IYCTNIDKKVTQGDIKLFFESVCGEVQRLRLL-GDYQHSTRIAFVEF---AMAESAIAAL 233
++ I KK T+ DI++ F S G+++ R+L G S AFV F AMA++AI A+
Sbjct: 137 LFIGMISKKCTENDIRVMFSSF-GQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAM 195
Query: 234 NCSGAVLG-SLPIRVSPSKT 252
+ + + G S P+ V + T
Sbjct: 196 HQAQTMEGCSSPMVVKFADT 215
>UNIPROTKB|G5EA30 [details] [associations]
symbol:CELF1 "CUG triplet repeat, RNA binding protein 1,
isoform CRA_c" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471064 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC090559 UniGene:Hs.595333
HGNC:HGNC:2549 ChiTaRS:CELF1 OMA:PTLYNQS ProteinModelPortal:G5EA30
SMR:G5EA30 PRIDE:G5EA30 Ensembl:ENST00000531165 ArrayExpress:G5EA30
Bgee:G5EA30 Uniprot:G5EA30
Length = 514
Score = 118 (46.6 bits), Expect = 0.00026, P = 0.00026
Identities = 53/200 (26%), Positives = 90/200 (45%)
Query: 62 RRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD----PNSV 117
++MN + Q ++ ++V + + +E+ L LF G V + + D P
Sbjct: 26 KKMNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQS 85
Query: 118 LRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRT 177
FV F +AAL + + ++VLP + P SE + R
Sbjct: 86 KGCCFVTFYTR---KAALEAQNAL---HNMKVLPGMHHPIQMKPA---DSEKNNAVEDRK 136
Query: 178 IYCTNIDKKVTQGDIKLFFESVCGEVQRLRLL-GDYQHSTRIAFVEF---AMAESAIAAL 233
++ I KK T+ DI++ F S G+++ R+L G S AFV F AMA++AI A+
Sbjct: 137 LFIGMISKKCTENDIRVMFSSF-GQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAM 195
Query: 234 NCSGAVLG-SLPIRVSPSKT 252
+ + + G S P+ V + T
Sbjct: 196 HQAQTMEGCSSPMVVKFADT 215
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 114 (45.2 bits), Expect = 0.00026, P = 0.00026
Identities = 52/192 (27%), Positives = 85/192 (44%)
Query: 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 132
+DE+ +T+YV ++ + VTE + LF G +C++ D + FVEF + A
Sbjct: 2 EDEM-PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA 60
Query: 133 AALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDI 192
AAL+ M G R + K VN P S+ + ++ ++ ++T DI
Sbjct: 61 AALA---AMNG----RKIMGKEV--KVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDI 111
Query: 193 KLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAM---AESAIAALNCSGAVLGSLPIRV 247
K F G + R++ D S FV F AE+AI + G LG IR
Sbjct: 112 KAAFAPF-GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG--GQWLGGRQIRT 168
Query: 248 S-PSKTPVRPRA 258
+ ++ P P++
Sbjct: 169 NWATRKPPAPKS 180
>TAIR|locus:2178198 [details] [associations]
symbol:AT5G09880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q14103
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI EMBL:AY054603
IPI:IPI00543371 RefSeq:NP_568220.1 UniGene:At.6946
ProteinModelPortal:Q93Y25 SMR:Q93Y25 STRING:Q93Y25 PRIDE:Q93Y25
EnsemblPlants:AT5G09880.1 GeneID:830848 KEGG:ath:AT5G09880
TAIR:At5g09880 InParanoid:Q93Y25 PhylomeDB:Q93Y25
ProtClustDB:CLSN2723619 Genevestigator:Q93Y25 Uniprot:Q93Y25
Length = 527
Score = 118 (46.6 bits), Expect = 0.00026, P = 0.00026
Identities = 50/199 (25%), Positives = 90/199 (45%)
Query: 59 QGKRRMNCRTSNAQQD-EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSV 117
+G RR + + D E +RTV+ + + TE + F G+V D R+ D NS
Sbjct: 147 RGSRRHRDKKDEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSR 206
Query: 118 LR--FAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTA--IAPVNPTFLPRSEDEREM 173
++EF D A++L+G + PV V PS+ +A N T + +
Sbjct: 207 RSKGVGYIEFYDVMSVPMAIALSGQLFLGQPVMVKPSEAEKNLAQSNSTTVGGTGP---- 262
Query: 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAMAESAIA 231
R +Y N+ +++ ++ FE+ G V+ ++L D + F++F E + A
Sbjct: 263 ADRKLYVGNLHFNMSELQLRQIFEAF-GPVELVQLPLDPETGQCKGFGFIQFVQLEHSKA 321
Query: 232 A-LNCSGAV-LGSLPIRVS 248
A + +G + + I+VS
Sbjct: 322 AQIALNGKLEIAGRTIKVS 340
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 115 (45.5 bits), Expect = 0.00026, P = 0.00026
Identities = 55/207 (26%), Positives = 96/207 (46%)
Query: 55 NGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP 114
NGY +CR D++ R + V+ + Q +T+E+L +LF + G++ ++ D
Sbjct: 3 NGYEDHMAE-DCR------DDIGRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDK 55
Query: 115 --NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFL-PRSEDER 171
L + FV + + A A++ T+ G +R L SKT + ++ P SE +
Sbjct: 56 VAGHSLGYGFVNYVTAKDAERAIN---TLNG---LR-LQSKT----IKVSYARPSSEVIK 104
Query: 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH--STRIAFVEF---AMA 226
+ +Y + + + +TQ D++ F S G + R+L D S +AF+ F + A
Sbjct: 105 DA---NLYISGLPRTMTQKDVEDMF-SPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEA 160
Query: 227 ESAIAALNCSGAVLGSLPIRVSPSKTP 253
E AI + N S PI V + P
Sbjct: 161 EEAITSFNGHKPPGSSEPITVKFAANP 187
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 117 (46.2 bits), Expect = 0.00026, P = 0.00026
Identities = 54/223 (24%), Positives = 99/223 (44%)
Query: 55 NGYSQGKRRMNCRTSNAQQDEVIRRT-VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD 113
N + N +N +E +T + V+ + Q ++++++ +LF++ G+V C++ D
Sbjct: 85 NNNTNNNNNNNATANNNNNNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRD 144
Query: 114 P--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDE 170
L + FV + +E A A++ L G L ++V +IA P SE
Sbjct: 145 KVTGQSLGYGFVNYVKQEDAEKAINALNGLRLQNKTIKV-----SIAR------PSSESI 193
Query: 171 REMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY---QH----STRIAFVEF 223
+ +Y + + K +TQ D++ F S G++ R+L D +H S + F+ F
Sbjct: 194 K---GANLYVSGLPKNMTQSDLESLF-SPYGKIITSRILCDNITGEHAAGLSKGVGFIRF 249
Query: 224 AM---AESAIAALNCSGAVLGSLPIRVSPSKTPVRPRAPRPPL 263
A+ AI LN + + PI V + P + PL
Sbjct: 250 DQRFEADRAIKELNGTTPKNSTEPITVKFANNPSSNKNSMQPL 292
>FB|FBgn0085391 [details] [associations]
symbol:CG34362 species:7227 "Drosophila melanogaster"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000381 GeneTree:ENSGT00680000099967
RefSeq:NP_001163754.1 UniGene:Dm.13924 ProteinModelPortal:E1JIZ9
SMR:E1JIZ9 EnsemblMetazoa:FBtr0301397 GeneID:43362
KEGG:dme:Dmel_CG34362 FlyBase:FBgn0085391 GenomeRNAi:43362
NextBio:833552 Bgee:E1JIZ9 Uniprot:E1JIZ9
Length = 800
Score = 120 (47.3 bits), Expect = 0.00027, P = 0.00027
Identities = 40/181 (22%), Positives = 81/181 (44%)
Query: 81 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR--FAFVEFTDEEGARAALS-L 137
++V D+ ++ +QL F G++ DCR+ DP ++ + FV F + A +A++ +
Sbjct: 463 IFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAITAM 522
Query: 138 AGTMLGFYPVRV--LPSKTAIAPVN--PTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIK 193
G LG +R K + N P ++ + T+Y ++ +T +
Sbjct: 523 NGQWLGSRSIRTNWATRKPPASKENIKPLTFDEVYNQSSPSNCTVYVGGVNSALTALSEE 582
Query: 194 LFFESVC--GEVQRLRLLGDYQHSTRIAFVEFAMAESAIAAL-NCSGAVLGSLPIRVSPS 250
+ ++ G +Q +R+ D + AFV F+ E+A A+ + + P++ S
Sbjct: 583 VLQKTFAPYGAIQEIRVFKDKGY----AFVRFSTKEAATHAIVGVHNTEINAQPVKCSWG 638
Query: 251 K 251
K
Sbjct: 639 K 639
>TAIR|locus:2028451 [details] [associations]
symbol:NUC-L1 "nucleolin like 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=RCA;IMP] [GO:0042254 "ribosome biogenesis" evidence=TAS]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=RCA;IMP] [GO:0010305 "leaf vascular tissue pattern
formation" evidence=IMP] [GO:0010588 "cotyledon vascular tissue
pattern formation" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] [GO:0048366 "leaf development" evidence=IMP]
[GO:0048367 "shoot system development" evidence=IMP] [GO:0080056
"petal vascular tissue pattern formation" evidence=IMP] [GO:0080057
"sepal vascular tissue pattern formation" evidence=IMP] [GO:0005829
"cytosol" evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0009220 "pyrimidine ribonucleotide biosynthetic process"
evidence=RCA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739
GO:GO:0005730 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0048364 GO:GO:0003723 GO:GO:0048366 GO:GO:0010305
EMBL:AC084414 eggNOG:COG0724 GO:GO:0010588 KO:K11294 EMBL:BT005793
IPI:IPI00532412 PIR:A96527 RefSeq:NP_175322.1 UniGene:At.25056
HSSP:P08199 ProteinModelPortal:Q9FVQ1 SMR:Q9FVQ1 IntAct:Q9FVQ1
STRING:Q9FVQ1 PaxDb:Q9FVQ1 PRIDE:Q9FVQ1 EnsemblPlants:AT1G48920.1
GeneID:841314 KEGG:ath:AT1G48920 TAIR:At1g48920
HOGENOM:HOG000124794 InParanoid:Q9FVQ1 OMA:EDASKTQ
ProtClustDB:CLSN2705589 Genevestigator:Q9FVQ1 GO:GO:0000478
GO:GO:0080056 GO:GO:0080057 Uniprot:Q9FVQ1
Length = 557
Score = 118 (46.6 bits), Expect = 0.00029, P = 0.00029
Identities = 45/175 (25%), Positives = 77/175 (44%)
Query: 79 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICG--DPNSVLRFAFVEFTDEEGARAALS 136
+T++ +++ + + F G+VVD R D S F VEF E A+ AL
Sbjct: 297 KTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALE 356
Query: 137 LAGTMLGFYPVRV-LPSKTAIAPVNPTFLPRSEDEREMCS----RTIYCTNIDKKVTQGD 191
G L +R+ + + P F P+S + R + I+ D +++ D
Sbjct: 357 FHGRPLLGREIRLDIAQERGERGERPAFTPQSGNFRSGGDGGDEKKIFVKGFDASLSEDD 416
Query: 192 IKLFFE---SVCGEVQRLRLLGDYQ--HSTRIAFVEFAMAESAIAALNCSGAVLG 241
IK S CGE++ + + D +S IA++EF+ E AL +G+ +G
Sbjct: 417 IKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEFS--EGKEKALELNGSDMG 469
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 115 (45.5 bits), Expect = 0.00029, P = 0.00029
Identities = 50/191 (26%), Positives = 84/191 (43%)
Query: 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARA 133
DE RT+YV ++ + VTE + +F G C++ D + FVEF + A A
Sbjct: 4 DEDQPRTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDPYCFVEFYENRHAAA 63
Query: 134 ALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIK 193
AL+ M G R + K VN P S+ + ++ ++ +++ D++
Sbjct: 64 ALA---AMNG----RKILGKDM--KVNWASTPSSQKKDTSNHFHVFVGDLSPEISTDDVR 114
Query: 194 LFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAM---AESAIAALNCSGAVLGSLPIRVS 248
F G++ R++ D S F+ F AESAI +N G LG IR +
Sbjct: 115 AAFAPF-GKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMN--GQWLGGRQIRTN 171
Query: 249 -PSKTPVRPRA 258
++ P P++
Sbjct: 172 WATRKPSAPKS 182
>UNIPROTKB|G3V7Z8 [details] [associations]
symbol:Pabpn1 "Protein Pabpn1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:619928 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474049 KO:K14396 GeneTree:ENSGT00390000001517 CTD:8106
RefSeq:NP_001128480.1 UniGene:Rn.39199 ProteinModelPortal:G3V7Z8
Ensembl:ENSRNOT00000021096 GeneID:116697 KEGG:rno:116697
NextBio:619592 Uniprot:G3V7Z8
Length = 302
Score = 114 (45.2 bits), Expect = 0.00029, P = 0.00029
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 129
E R++YV ++D T E+L F CG V + C + G P FA++EF+D+E
Sbjct: 164 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKE 220
Query: 130 GARAALSLAGTMLGFYPVRVLPSKT 154
R +L+L ++ ++V+P +T
Sbjct: 221 SVRTSLALDESLFRGRQIKVIPKRT 245
>UNIPROTKB|Q28165 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0016973 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD EMBL:X89969
EMBL:BC133558 IPI:IPI00701904 PIR:S59863 RefSeq:NP_776994.1
UniGene:Bt.5085 ProteinModelPortal:Q28165 SMR:Q28165 STRING:Q28165
PRIDE:Q28165 Ensembl:ENSBTAT00000021887 GeneID:282298
KEGG:bta:282298 CTD:8106 InParanoid:Q28165 OMA:RTTSWYS
NextBio:20806099 ArrayExpress:Q28165 Uniprot:Q28165
Length = 306
Score = 114 (45.2 bits), Expect = 0.00030, P = 0.00030
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 129
E R++YV ++D T E+L F CG V + C + G P FA++EF+D+E
Sbjct: 168 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKE 224
Query: 130 GARAALSLAGTMLGFYPVRVLPSKT 154
R +L+L ++ ++V+P +T
Sbjct: 225 SVRTSLALDESLFRGRQIKVIPKRT 249
>UNIPROTKB|E2R6I0 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GO:GO:0016973
GeneTree:ENSGT00390000001517 OMA:RTTSWYS EMBL:AAEX03005608
Ensembl:ENSCAFT00000018216 Uniprot:E2R6I0
Length = 306
Score = 114 (45.2 bits), Expect = 0.00030, P = 0.00030
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 129
E R++YV ++D T E+L F CG V + C + G P FA++EF+D+E
Sbjct: 168 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKE 224
Query: 130 GARAALSLAGTMLGFYPVRVLPSKT 154
R +L+L ++ ++V+P +T
Sbjct: 225 SVRTSLALDESLFRGRQIKVIPKRT 249
>UNIPROTKB|Q86U42 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0006936 "muscle
contraction" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0019048 "virus-host
interaction" evidence=TAS] [GO:0019054 "modulation by virus of host
cellular process" evidence=TAS] [GO:0019058 "viral infectious
cycle" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0046778 "modification by virus of host mRNA
processing" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006936 EMBL:CH471078 GO:GO:0030529 GO:GO:0019058
GO:GO:0000398 eggNOG:NOG238057 HPA:HPA000637 Reactome:REACT_1788
GO:GO:0006369 GO:GO:0031124 HOVERGEN:HBG107480 Reactome:REACT_78
GO:GO:0046778 GO:GO:0016973 KO:K14396 HOGENOM:HOG000208465
OrthoDB:EOG4N04GD CTD:8106 OMA:RTTSWYS EMBL:AF026029 EMBL:BX247976
EMBL:BC010939 IPI:IPI00005792 IPI:IPI00414963 RefSeq:NP_004634.1
UniGene:Hs.707712 PDB:3B4D PDB:3B4M PDB:3UCG PDBsum:3B4D
PDBsum:3B4M PDBsum:3UCG ProteinModelPortal:Q86U42 SMR:Q86U42
IntAct:Q86U42 MINT:MINT-89761 STRING:Q86U42 PhosphoSite:Q86U42
DMDM:46403176 PaxDb:Q86U42 PRIDE:Q86U42 Ensembl:ENST00000216727
Ensembl:ENST00000397276 GeneID:8106 KEGG:hsa:8106 UCSC:uc001wjh.4
UCSC:uc001wjj.3 GeneCards:GC14P023789 HGNC:HGNC:8565 MIM:164300
MIM:602279 neXtProt:NX_Q86U42 Orphanet:270 PharmGKB:PA32891
InParanoid:Q86U42 PhylomeDB:Q86U42 EvolutionaryTrace:Q86U42
GenomeRNAi:8106 NextBio:30755 PMAP-CutDB:Q86U42 ArrayExpress:Q86U42
Bgee:Q86U42 CleanEx:HS_PABPN1 Genevestigator:Q86U42
GermOnline:ENSG00000100836 Uniprot:Q86U42
Length = 306
Score = 114 (45.2 bits), Expect = 0.00030, P = 0.00030
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 129
E R++YV ++D T E+L F CG V + C + G P FA++EF+D+E
Sbjct: 168 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKE 224
Query: 130 GARAALSLAGTMLGFYPVRVLPSKT 154
R +L+L ++ ++V+P +T
Sbjct: 225 SVRTSLALDESLFRGRQIKVIPKRT 249
>UNIPROTKB|F2Z5L8 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GO:GO:0016973 KO:K14396
GeneTree:ENSGT00390000001517 CTD:8106 OMA:RTTSWYS EMBL:CU633625
RefSeq:NP_001230477.1 UniGene:Ssc.16011 ProteinModelPortal:F2Z5L8
SMR:F2Z5L8 PRIDE:F2Z5L8 Ensembl:ENSSSCT00000002263 GeneID:100155260
KEGG:ssc:100155260 Uniprot:F2Z5L8
Length = 306
Score = 114 (45.2 bits), Expect = 0.00030, P = 0.00030
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 129
E R++YV ++D T E+L F CG V + C + G P FA++EF+D+E
Sbjct: 168 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKE 224
Query: 130 GARAALSLAGTMLGFYPVRVLPSKT 154
R +L+L ++ ++V+P +T
Sbjct: 225 SVRTSLALDESLFRGRQIKVIPKRT 249
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 116 (45.9 bits), Expect = 0.00032, P = 0.00032
Identities = 46/184 (25%), Positives = 80/184 (43%)
Query: 70 NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR--FAFVEFTD 127
N +E RTV+ + ++ L F T G+V D R+ D NS A+VEF D
Sbjct: 144 NLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVD 203
Query: 128 EEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCS-RTIYCTNIDKK 186
A+ L G + P+ V S+ A N + ++ +Y ++
Sbjct: 204 VSSVPLAIGLTGQRVLGVPIIVQASQ---AEKNRAAAMANNLQKGSAGPMRLYVGSLHFN 260
Query: 187 VTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAMAESAIAALN-CSGAVLGSL 243
+T+ ++ FE G ++ ++L+ D + S F+ F+ +E A AL +G L
Sbjct: 261 ITEDMLRGIFEPF-GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 319
Query: 244 PIRV 247
P++V
Sbjct: 320 PMKV 323
>UNIPROTKB|F1RKD1 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0040019 "positive regulation of embryonic development"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019 OMA:VFREKNV
GeneTree:ENSGT00700000104575 EMBL:CT971483
Ensembl:ENSSSCT00000010816 Uniprot:F1RKD1
Length = 965
Score = 120 (47.3 bits), Expect = 0.00034, P = 0.00034
Identities = 46/165 (27%), Positives = 73/165 (44%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSV-----LRFAFVEFTDEEGARAA 134
T+++ +++ TEE L +F G V C I N + F FVE+ E A+ A
Sbjct: 736 TLFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYKKPEQAQKA 795
Query: 135 LS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIK 193
L L G ++ + + V S+ A P PT + + R+ + I NI + +I+
Sbjct: 796 LKQLQGHVVDGHKLEVRISERATKPA-PTATRKKQVARKQTTSKILVRNIPFQADSREIR 854
Query: 194 LFFESVCGEVQRLRL----LGDYQHSTRIAFVEFAMAESAIAALN 234
F S GE++ +RL G H FV+F + A A N
Sbjct: 855 ELF-STFGELKTVRLPKKMTGTGTHRG-FGFVDFFTKQDAKRAFN 897
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 117 (46.2 bits), Expect = 0.00035, P = 0.00035
Identities = 44/165 (26%), Positives = 76/165 (46%)
Query: 81 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAG 139
+YV ++D +T L +F G ++ C++ + F FV+F E+ A +A S L G
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHG 173
Query: 140 TMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESV 199
+M+ Y ++ +K I + ++D S +Y N+ + VT + F S
Sbjct: 174 SMV--YGKKLFVAKF-INKDERAAMAGNQD-----STNVYVKNLIETVTDDCLHTLF-SQ 224
Query: 200 CGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAAL-NCSGAVLGS 242
G V + ++ D +R FV F E+A A+ + G LGS
Sbjct: 225 YGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGS 269
>UNIPROTKB|I3LCY5 [details] [associations]
symbol:LOC100525398 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:RCGEVHR
GeneTree:ENSGT00390000001517 EMBL:FP102571
Ensembl:ENSSSCT00000023360 Uniprot:I3LCY5
Length = 295
Score = 113 (44.8 bits), Expect = 0.00036, P = 0.00036
Identities = 29/94 (30%), Positives = 49/94 (52%)
Query: 161 PTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRI 218
P+ P + E + R++Y N+D + T +++ +F CGE+ R+ +L D H
Sbjct: 149 PSDTPTEKVEAD--HRSVYVGNVDYEGTARELEAYFNH-CGEIHRVTILCDKFSGHPKGY 205
Query: 219 AFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKT 252
A++EFA SA AA+ +V I+V P +T
Sbjct: 206 AYIEFATESSAQAAVELDNSVFRGRVIKVLPKRT 239
Score = 111 (44.1 bits), Expect = 0.00062, P = 0.00062
Identities = 27/93 (29%), Positives = 48/93 (51%)
Query: 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 129
E R+VYV ++D + T +L F CG++ + C + G P +A++EF E
Sbjct: 158 EADHRSVYVGNVDYEGTARELEAYFNHCGEIHRVTILCDKFSGHPKG---YAYIEFATES 214
Query: 130 GARAALSLAGTMLGFYPVRVLPSKTAIAPVNPT 162
A+AA+ L ++ ++VLP +T ++ T
Sbjct: 215 SAQAAVELDNSVFRGRVIKVLPKRTNFPGISST 247
>UNIPROTKB|Q7ZXB8 [details] [associations]
symbol:pabpn1-b "Polyadenylate-binding protein 2-B"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006378 HOVERGEN:HBG107480 GO:GO:0008143
KO:K14396 HSSP:P33240 EMBL:BC045063 RefSeq:NP_001080719.1
UniGene:Xl.21871 ProteinModelPortal:Q7ZXB8 SMR:Q7ZXB8 GeneID:380411
KEGG:xla:380411 CTD:380411 Xenbase:XB-GENE-1007055 Uniprot:Q7ZXB8
Length = 295
Score = 113 (44.8 bits), Expect = 0.00036, P = 0.00036
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 129
E R++YV ++D T E+L F CG V + C + G P FA++EF+D+E
Sbjct: 158 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKG---FAYIEFSDKE 214
Query: 130 GARAALSLAGTMLGFYPVRVLPSKT 154
R +L+L ++ ++V+P +T
Sbjct: 215 SVRTSLALDESLFRGRQIKVVPKRT 239
>UNIPROTKB|F1MY46 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:DAAA02028045 OMA:VTERLDG
TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089 IPI:IPI00693162
UniGene:Bt.91499 Ensembl:ENSBTAT00000023525 Uniprot:F1MY46
Length = 463
Score = 116 (45.9 bits), Expect = 0.00036, P = 0.00036
Identities = 48/186 (25%), Positives = 81/186 (43%)
Query: 70 NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR--FAFVEFTD 127
N +E RTV+ + ++ L F G+V D RI D NS A+VEF +
Sbjct: 172 NLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCE 231
Query: 128 EEGARAALSLAGTMLGFYPVRVLPS---KTAIAPVNPTFLPRSEDEREMCSRTIYCTNID 184
+ A+ L G L P+ V S K +A + S + +++C NI
Sbjct: 232 IQSVPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGSGGPVRLYVGSLHC-NIT 290
Query: 185 KKVTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAMAESAIAALN-CSGAVLG 241
+ + +G ++ F G++ + L+ D + S F+ F+ +E A AL +G L
Sbjct: 291 EDMLRGILEPF-----GKIDNIVLMKDSETGRSKGYGFITFSDSECARRALEQLNGFELA 345
Query: 242 SLPIRV 247
P+R+
Sbjct: 346 GRPMRI 351
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 108 (43.1 bits), Expect = 0.00039, P = 0.00039
Identities = 47/179 (26%), Positives = 86/179 (48%)
Query: 65 NCRTS-NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFA 121
NC + ++ E + + V+ + Q +T+E+L +LF + G++ C++ D L +
Sbjct: 24 NCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYG 83
Query: 122 FVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFL-PRSEDEREMCSRTIYC 180
FV + D + A A++ T+ G +R L +KT + ++ P S R+ +Y
Sbjct: 84 FVNYIDPKDAEKAIN---TLNG---LR-LQTKT----IKVSYARPSSASIRDA---NLYV 129
Query: 181 TNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH--STRIAFVEFAM---AESAIAALN 234
+ + K +TQ +++ F S G + R+L D S + F+ F AE AI LN
Sbjct: 130 SGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN 187
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 115 (45.5 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 52/179 (29%), Positives = 86/179 (48%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEFTDEEGARAALSL 137
TVYV +D++V+E L LFL G VV+ + D + FVEF EE A A+ +
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 138 AGTMLGFY--PVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLF 195
M+ Y P+RV +K + + ++ I+ N+D ++ D KL
Sbjct: 74 MN-MIKLYGKPIRV--NKAS-----------AHNKNLDVGANIFIGNLDPEI---DEKLL 116
Query: 196 FE--SVCGEV-QRLRLLGDYQ--HSTRIAFVEFAMAESAIAALNC-SGAVLGSLPIRVS 248
++ S G + Q +++ D +S AF+ FA +++ AA+ +G L + PI VS
Sbjct: 117 YDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 175
Score = 38 (18.4 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 237 GAVLGSLPIRVSPSKTPVRPRAPRPP 262
GA+ +P + P P AP PP
Sbjct: 251 GAMPPGMPPAMPPPPMPPGAGAPGPP 276
Score = 37 (18.1 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 244 PIRVSPSKTPVRPRAPRPP 262
P + P P P P PP
Sbjct: 250 PGAMPPGMPPAMPPPPMPP 268
>ZFIN|ZDB-GENE-061013-298 [details] [associations]
symbol:rbm46 "RNA binding motif protein 46"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-061013-298
GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
GO:GO:0003723 EMBL:BC124720 IPI:IPI00610686 RefSeq:NP_001073493.2
UniGene:Dr.132665 ProteinModelPortal:Q08BH5 SMR:Q08BH5
GeneID:566042 KEGG:dre:566042 CTD:166863 eggNOG:NOG235650
OrthoDB:EOG4FR0RW NextBio:20887996 ArrayExpress:Q08BH5
Uniprot:Q08BH5
Length = 510
Score = 84 (34.6 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 29/91 (31%), Positives = 45/91 (49%)
Query: 165 PRSE-DEREMCS-RTIYCTNIDKKVTQGDIKLFFESVC-GEVQRLRLLGDYQHSTRIAFV 221
P E DE M R +Y N+ T+ ++ F + G V+R++ L DY AF+
Sbjct: 207 PEKELDEETMQRVRVLYVRNLMLSTTEETLRSEFSQLKPGSVERVKKLTDY------AFI 260
Query: 222 EFAMAESAIAAL-NCSGAVLGSLPIRVSPSK 251
F E A+ AL + +G V+ PI V+ +K
Sbjct: 261 HFYNREDALTALESMNGKVIDGSPIEVTLAK 291
Score = 75 (31.5 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 26/94 (27%), Positives = 44/94 (46%)
Query: 50 AFQKRNGYSQ----GKRRMNCRTSNAQQDEVIR-RTVYVSDIDQQVTEEQLATLFLTCGQ 104
A R GYS G+R+ + R R V+V I + + E++L +F G
Sbjct: 11 ALMDRTGYSMVQENGQRKFGGPPPGWEGPPPPRGREVFVGKIPRDMYEDELVPVFEQAGH 70
Query: 105 VVDCRICGDPNSVLR-FAFVEFTDEEGARAALSL 137
+ + R+ + + R +AFV +T E A+ A+ L
Sbjct: 71 IYEFRLMMEFSGENRGYAFVMYTTREKAQRAIQL 104
>ZFIN|ZDB-GENE-060824-3 [details] [associations]
symbol:a1cf "apobec1 complementation factor"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001159 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50137 SMART:SM00360
InterPro:IPR014720 ZFIN:ZDB-GENE-060824-3 GO:GO:0000166
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0005622
GO:GO:0003725 EMBL:BX248126 IPI:IPI00486366
Ensembl:ENSDART00000010358 Bgee:E7F6B7 Uniprot:E7F6B7
Length = 588
Score = 98 (39.6 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 48/139 (34%), Positives = 69/139 (49%)
Query: 120 FAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSE-DEREMCS-RT 177
FAFVE+ E RAA +L P R+ IA V+ P E DE M + +
Sbjct: 181 FAFVEY---ETHRAAAMARRKLL---PGRIQLWGHPIA-VDWAE-PEVEVDEDTMATVKI 232
Query: 178 IYCTNIDKKVTQGDIKLFFESVC-GEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNC- 235
+Y N+ T+ I+ F S+ G V+R++ + DY AFV F+ E AI A+N
Sbjct: 233 LYVRNLMLPTTEETIEKEFNSIKPGAVERVKKIRDY------AFVHFSQREDAINAMNAL 286
Query: 236 SGAVLGSLPIRVSPSKTPV 254
+G V+ PI V+ +K PV
Sbjct: 287 NGKVIDGSPIEVTLAK-PV 304
Score = 61 (26.5 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 15/56 (26%), Positives = 32/56 (57%)
Query: 81 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAAL 135
++V + + + E++L L G++ + R+ D N R +AFV F+ ++ A+ A+
Sbjct: 58 IFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDFNGNNRGYAFVTFSTKQEAKNAM 113
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 115 (45.5 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 52/179 (29%), Positives = 86/179 (48%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEFTDEEGARAALSL 137
TVYV +D++V+E L LFL G VV+ + D + FVEF EE A A+ +
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 138 AGTMLGFY--PVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLF 195
M+ Y P+RV +K + + ++ I+ N+D ++ D KL
Sbjct: 74 MN-MIKLYGKPIRV--NKAS-----------AHNKNLDVGANIFIGNLDPEI---DEKLL 116
Query: 196 FE--SVCGEV-QRLRLLGDYQ--HSTRIAFVEFAMAESAIAALNC-SGAVLGSLPIRVS 248
++ S G + Q +++ D +S AF+ FA +++ AA+ +G L + PI VS
Sbjct: 117 YDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 175
Score = 38 (18.4 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 241 GSLPIRVSPSKTPVRPRAPRPPL 263
G LP P TP P PR PL
Sbjct: 399 GPLP---PPRPTPRPPVPPRGPL 418
Score = 36 (17.7 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 241 GSLPIRVSPSKTPVRPRAPRPP 262
G+LP P P P P PP
Sbjct: 251 GALP----PGIPPAMPPPPMPP 268
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 115 (45.5 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 52/179 (29%), Positives = 86/179 (48%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEFTDEEGARAALSL 137
TVYV +D++V+E L LFL G VV+ + D + FVEF EE A A+ +
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 138 AGTMLGFY--PVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLF 195
M+ Y P+RV +K + + ++ I+ N+D ++ D KL
Sbjct: 74 MN-MIKLYGKPIRV--NKAS-----------AHNKNLDVGANIFIGNLDPEI---DEKLL 116
Query: 196 FE--SVCGEV-QRLRLLGDYQ--HSTRIAFVEFAMAESAIAALNC-SGAVLGSLPIRVS 248
++ S G + Q +++ D +S AF+ FA +++ AA+ +G L + PI VS
Sbjct: 117 YDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 175
Score = 38 (18.4 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 241 GSLPIRVSPSKTPVRPRAPRPPL 263
G LP P TP P PR PL
Sbjct: 399 GPLP---PPRPTPRPPVPPRGPL 418
Score = 36 (17.7 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 241 GSLPIRVSPSKTPVRPRAPRPP 262
G+LP P P P P PP
Sbjct: 251 GALP----PGIPPAMPPPPMPP 268
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 115 (45.5 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 52/179 (29%), Positives = 86/179 (48%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEFTDEEGARAALSL 137
TVYV +D++V+E L LFL G VV+ + D + FVEF EE A A+ +
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 138 AGTMLGFY--PVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLF 195
M+ Y P+RV +K + + ++ I+ N+D ++ D KL
Sbjct: 74 MN-MIKLYGKPIRV--NKAS-----------AHNKNLDVGANIFIGNLDPEI---DEKLL 116
Query: 196 FE--SVCGEV-QRLRLLGDYQ--HSTRIAFVEFAMAESAIAALNC-SGAVLGSLPIRVS 248
++ S G + Q +++ D +S AF+ FA +++ AA+ +G L + PI VS
Sbjct: 117 YDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 175
Score = 38 (18.4 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 241 GSLPIRVSPSKTPVRPRAPRPPL 263
G LP P TP P PR PL
Sbjct: 399 GPLP---PPRPTPRPPVPPRGPL 418
Score = 36 (17.7 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 241 GSLPIRVSPSKTPVRPRAPRPP 262
G+LP P P P P PP
Sbjct: 251 GALP----PGIPPAMPPPPMPP 268
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 115 (45.5 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 52/179 (29%), Positives = 86/179 (48%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEFTDEEGARAALSL 137
TVYV +D++V+E L LFL G VV+ + D + FVEF EE A A+ +
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 138 AGTMLGFY--PVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLF 195
M+ Y P+RV +K + + ++ I+ N+D ++ D KL
Sbjct: 74 MN-MIKLYGKPIRV--NKAS-----------AHNKNLDVGANIFIGNLDPEI---DEKLL 116
Query: 196 FE--SVCGEV-QRLRLLGDYQ--HSTRIAFVEFAMAESAIAALNC-SGAVLGSLPIRVS 248
++ S G + Q +++ D +S AF+ FA +++ AA+ +G L + PI VS
Sbjct: 117 YDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 175
Score = 38 (18.4 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 241 GSLPIRVSPSKTPVRPRAPRPPL 263
G LP P TP P PR PL
Sbjct: 399 GPLP---PPRPTPRPPVPPRGPL 418
Score = 36 (17.7 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 241 GSLPIRVSPSKTPVRPRAPRPP 262
G+LP P P P P PP
Sbjct: 251 GALP----PGIPPAMPPPPMPP 268
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 115 (45.5 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 52/179 (29%), Positives = 86/179 (48%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEFTDEEGARAALSL 137
TVYV +D++V+E L LFL G VV+ + D + FVEF EE A A+ +
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 138 AGTMLGFY--PVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLF 195
M+ Y P+RV +K + + ++ I+ N+D ++ D KL
Sbjct: 74 MN-MIKLYGKPIRV--NKAS-----------AHNKNLDVGANIFIGNLDPEI---DEKLL 116
Query: 196 FE--SVCGEV-QRLRLLGDYQ--HSTRIAFVEFAMAESAIAALNC-SGAVLGSLPIRVS 248
++ S G + Q +++ D +S AF+ FA +++ AA+ +G L + PI VS
Sbjct: 117 YDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 175
Score = 38 (18.4 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 241 GSLPIRVSPSKTPVRPRAPRPPL 263
G LP P TP P PR PL
Sbjct: 399 GPLP---PPRPTPRPPVPPRGPL 418
Score = 36 (17.7 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 241 GSLPIRVSPSKTPVRPRAPRPP 262
G+LP P P P P PP
Sbjct: 251 GALP----PGIPPAMPPPPMPP 268
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 115 (45.5 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 52/179 (29%), Positives = 86/179 (48%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEFTDEEGARAALSL 137
TVYV +D++V+E L LFL G VV+ + D + FVEF EE A A+ +
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 138 AGTMLGFY--PVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLF 195
M+ Y P+RV +K + + ++ I+ N+D ++ D KL
Sbjct: 74 MN-MIKLYGKPIRV--NKAS-----------AHNKNLDVGANIFIGNLDPEI---DEKLL 116
Query: 196 FE--SVCGEV-QRLRLLGDYQ--HSTRIAFVEFAMAESAIAALNC-SGAVLGSLPIRVS 248
++ S G + Q +++ D +S AF+ FA +++ AA+ +G L + PI VS
Sbjct: 117 YDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 175
Score = 38 (18.4 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 11/23 (47%), Positives = 11/23 (47%)
Query: 241 GSLPIRVSPSKTPVRPRAPRPPL 263
G LP P TP P PR PL
Sbjct: 399 GPLP---PPRPTPRPPVPPRGPL 418
Score = 36 (17.7 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 241 GSLPIRVSPSKTPVRPRAPRPP 262
G+LP P P P P PP
Sbjct: 251 GALP----PGIPPAMPPPPMPP 268
>UNIPROTKB|H0YEQ8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000470443 Uniprot:H0YEQ8
Length = 112
Score = 93 (37.8 bits), Expect = 0.00042, P = 0.00042
Identities = 20/76 (26%), Positives = 39/76 (51%)
Query: 71 AQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFT 126
+Q+D +R++ V++ ++D+ + + L F G ++ C++ D N +AFV F
Sbjct: 31 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFE 90
Query: 127 DEEGARAALSLAGTML 142
+E A A+ ML
Sbjct: 91 TQEAADKAIEKMNGML 106
>ZFIN|ZDB-GENE-040625-116 [details] [associations]
symbol:puf60b "poly-U binding splicing factor b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040625-116 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 EMBL:AL772146 EMBL:BC071467 IPI:IPI00495062
IPI:IPI00512039 IPI:IPI00866101 RefSeq:NP_001002121.1
UniGene:Dr.90714 HSSP:P26368 ProteinModelPortal:Q6IQE0 SMR:Q6IQE0
STRING:Q6IQE0 PRIDE:Q6IQE0 Ensembl:ENSDART00000038487
Ensembl:ENSDART00000052274 Ensembl:ENSDART00000143285 GeneID:415211
KEGG:dre:415211 CTD:415211 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 InParanoid:Q7ZZ33
OMA:YLTELEI OrthoDB:EOG4SQWWP NextBio:20818880 Bgee:Q6IQE0
InterPro:IPR006532 TIGRFAMs:TIGR01645 Uniprot:Q6IQE0
Length = 516
Score = 116 (45.9 bits), Expect = 0.00043, P = 0.00043
Identities = 52/214 (24%), Positives = 90/214 (42%)
Query: 56 GYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN 115
G+ + + Q+ I VYV I ++ E+ + F G + + D
Sbjct: 63 GFGDPLSSLQSVAAQRQRALAIMCRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSV 122
Query: 116 SVLR--FAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDERE 172
++ FAFVE+ E A+ AL + MLG ++V +I P +E+ R
Sbjct: 123 TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV-GRPGSIGQAQPIIEQLAEEARA 181
Query: 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR--IAFVEFAMAESAI 230
+R IY +I ++ DIK FE+ G+++ L + F+E+ +S++
Sbjct: 182 Y-NR-IYVASIHPDLSDDDIKSVFEAF-GKIKSCMLAREPTTGKHKGFGFIEYEKPQSSL 238
Query: 231 AALNCSGAV-LGSLPIRVSPSKTPVRPR-APRPP 262
A++ LG +RV + TP P P P
Sbjct: 239 DAVSSMNLFDLGGQYLRVGKAVTPPMPLLTPTTP 272
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 116 (45.9 bits), Expect = 0.00044, P = 0.00044
Identities = 46/184 (25%), Positives = 80/184 (43%)
Query: 70 NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR--FAFVEFTD 127
N +E RTV+ + ++ L F T G+V D R+ D NS A+VEF D
Sbjct: 144 NLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVD 203
Query: 128 EEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCS-RTIYCTNIDKK 186
A+ L G + P+ V S+ A N + ++ +Y ++
Sbjct: 204 VSSVPLAIGLTGQRVLGVPIIVQASQ---AEKNRAAAMANNLQKGSAGPMRLYVGSLHFN 260
Query: 187 VTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAMAESAIAALN-CSGAVLGSL 243
+T+ ++ FE G ++ ++L+ D + S F+ F+ +E A AL +G L
Sbjct: 261 ITEDMLRGIFEPF-GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 319
Query: 244 PIRV 247
P++V
Sbjct: 320 PMKV 323
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 116 (45.9 bits), Expect = 0.00044, P = 0.00044
Identities = 46/184 (25%), Positives = 80/184 (43%)
Query: 70 NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR--FAFVEFTD 127
N +E RTV+ + ++ L F T G+V D R+ D NS A+VEF D
Sbjct: 144 NLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVD 203
Query: 128 EEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCS-RTIYCTNIDKK 186
A+ L G + P+ V S+ A N + ++ +Y ++
Sbjct: 204 VSSVPLAIGLTGQRVLGVPIIVQASQ---AEKNRAAAMANNLQKGSAGPMRLYVGSLHFN 260
Query: 187 VTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAMAESAIAALN-CSGAVLGSL 243
+T+ ++ FE G ++ ++L+ D + S F+ F+ +E A AL +G L
Sbjct: 261 ITEDMLRGIFEPF-GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 319
Query: 244 PIRV 247
P++V
Sbjct: 320 PMKV 323
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 116 (45.9 bits), Expect = 0.00044, P = 0.00044
Identities = 46/184 (25%), Positives = 80/184 (43%)
Query: 70 NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR--FAFVEFTD 127
N +E RTV+ + ++ L F T G+V D R+ D NS A+VEF D
Sbjct: 144 NLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVD 203
Query: 128 EEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCS-RTIYCTNIDKK 186
A+ L G + P+ V S+ A N + ++ +Y ++
Sbjct: 204 VSSVPLAIGLTGQRVLGVPIIVQASQ---AEKNRAAAMANNLQKGSAGPMRLYVGSLHFN 260
Query: 187 VTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAMAESAIAALN-CSGAVLGSL 243
+T+ ++ FE G ++ ++L+ D + S F+ F+ +E A AL +G L
Sbjct: 261 ITEDMLRGIFEPF-GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 319
Query: 244 PIRV 247
P++V
Sbjct: 320 PMKV 323
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 114 (45.2 bits), Expect = 0.00044, P = 0.00044
Identities = 52/192 (27%), Positives = 85/192 (44%)
Query: 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 132
+DE+ +T+YV ++ + VTE + LF G +C++ D + FVEF + A
Sbjct: 2 EDEM-PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA 60
Query: 133 AALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDI 192
AAL+ M G R + K VN P S+ + ++ ++ ++T DI
Sbjct: 61 AALA---AMNG----RKIMGKEV--KVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDI 111
Query: 193 KLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAM---AESAIAALNCSGAVLGSLPIRV 247
K F G + R++ D S FV F AE+AI + G LG IR
Sbjct: 112 KAAFAPF-GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG--GQWLGGRQIRT 168
Query: 248 S-PSKTPVRPRA 258
+ ++ P P++
Sbjct: 169 NWATRKPPAPKS 180
>UNIPROTKB|F1NF69 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 EMBL:AADN02034959
EMBL:AADN02034960 EMBL:AADN02034961 EMBL:AADN02034962
EMBL:AADN02034963 IPI:IPI00577406 Ensembl:ENSGALT00000007806
ArrayExpress:F1NF69 Uniprot:F1NF69
Length = 772
Score = 118 (46.6 bits), Expect = 0.00044, P = 0.00044
Identities = 48/185 (25%), Positives = 89/185 (48%)
Query: 80 TVYVSDIDQQVT--EEQLATLFLTCGQVVDCR-ICGDPNSVLRFAFVEFTDEEGARAALS 136
TV+VS++ +T E +L LF +CG+V R + + + + +VEF DE+ A AL
Sbjct: 589 TVFVSNLSYNMTDPEVKLKELFESCGEVSQVRPVFSNKGTFRGYCYVEFKDEKSALQALG 648
Query: 137 LAGTMLGFYPVRVLPSKTAIAPVNPTF-LPRSEDEREMCSRTIYCTNIDKKVTQGDIKLF 195
+ ++ P+ V P NP F + R E ++ + + T+ ++
Sbjct: 649 MDRKVVEGRPMFVSPCVDKNK--NPDFKVFRYSTTLE--KHKLFISGLPFSCTKEEL--- 701
Query: 196 FESVC---GEVQRLRLLGDYQHSTR-IAFVEFAM-AESAIAALNCSGAVLGSLPIRVSPS 250
E +C G V+ +RL+ + + +A+VE+ A+++ A L G + I+V+ S
Sbjct: 702 -EDICKAHGNVKDIRLVTNRAGKPKGLAYVEYENEAQASQAVLKMDGLTIKEHVIKVAIS 760
Query: 251 KTPVR 255
P+R
Sbjct: 761 NPPLR 765
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 116 (45.9 bits), Expect = 0.00044, P = 0.00044
Identities = 46/184 (25%), Positives = 80/184 (43%)
Query: 70 NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR--FAFVEFTD 127
N +E RTV+ + ++ L F T G+V D R+ D NS A+VEF D
Sbjct: 144 NLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVD 203
Query: 128 EEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCS-RTIYCTNIDKK 186
A+ L G + P+ V S+ A N + ++ +Y ++
Sbjct: 204 VSSVPLAIGLTGQRVLGVPIIVQASQ---AEKNRAAAMANNLQKGSAGPMRLYVGSLHFN 260
Query: 187 VTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAMAESAIAALN-CSGAVLGSL 243
+T+ ++ FE G ++ ++L+ D + S F+ F+ +E A AL +G L
Sbjct: 261 ITEDMLRGIFEPF-GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 319
Query: 244 PIRV 247
P++V
Sbjct: 320 PMKV 323
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 113 (44.8 bits), Expect = 0.00044, P = 0.00044
Identities = 55/207 (26%), Positives = 96/207 (46%)
Query: 55 NGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP 114
NGY +CR D++ R + V+ + Q +T+++L +LF + G+V ++ D
Sbjct: 3 NGYEDHMAE-DCR------DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDK 55
Query: 115 --NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFL-PRSEDER 171
L + FV + + A A++ T+ G +R L SKT + ++ P SE +
Sbjct: 56 VAGHSLGYGFVNYVTAKDAERAIN---TLNG---LR-LQSKT----IKVSYARPSSEVIK 104
Query: 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH--STRIAFVEF---AMA 226
+ +Y + + + +TQ D++ F S G + R+L D S +AF+ F + A
Sbjct: 105 DA---NLYISGLPRNMTQKDVEDMF-SRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEA 160
Query: 227 ESAIAALNCSGAVLGSLPIRVSPSKTP 253
E AI + N S PI V + P
Sbjct: 161 EEAITSFNGHKPPGSSEPITVKFAANP 187
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 116 (45.9 bits), Expect = 0.00045, P = 0.00044
Identities = 46/184 (25%), Positives = 80/184 (43%)
Query: 70 NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR--FAFVEFTD 127
N +E RTV+ + ++ L F T G+V D R+ D NS A+VEF D
Sbjct: 144 NLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVD 203
Query: 128 EEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCS-RTIYCTNIDKK 186
A+ L G + P+ V S+ A N + ++ +Y ++
Sbjct: 204 VSSVPLAIGLTGQRVLGVPIIVQASQ---AEKNRAAAMANNLQKGSAGPMRLYVGSLHFN 260
Query: 187 VTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAMAESAIAALN-CSGAVLGSL 243
+T+ ++ FE G ++ ++L+ D + S F+ F+ +E A AL +G L
Sbjct: 261 ITEDMLRGIFEPF-GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 319
Query: 244 PIRV 247
P++V
Sbjct: 320 PMKV 323
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 116 (45.9 bits), Expect = 0.00045, P = 0.00044
Identities = 46/184 (25%), Positives = 80/184 (43%)
Query: 70 NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR--FAFVEFTD 127
N +E RTV+ + ++ L F T G+V D R+ D NS A+VEF D
Sbjct: 144 NLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVD 203
Query: 128 EEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCS-RTIYCTNIDKK 186
A+ L G + P+ V S+ A N + ++ +Y ++
Sbjct: 204 VSSVPLAIGLTGQRVLGVPIIVQASQ---AEKNRAAAMANNLQKGSAGPMRLYVGSLHFN 260
Query: 187 VTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAMAESAIAALN-CSGAVLGSL 243
+T+ ++ FE G ++ ++L+ D + S F+ F+ +E A AL +G L
Sbjct: 261 ITEDMLRGIFEPF-GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 319
Query: 244 PIRV 247
P++V
Sbjct: 320 PMKV 323
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 116 (45.9 bits), Expect = 0.00045, P = 0.00044
Identities = 46/184 (25%), Positives = 80/184 (43%)
Query: 70 NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR--FAFVEFTD 127
N +E RTV+ + ++ L F T G+V D R+ D NS A+VEF D
Sbjct: 144 NLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVD 203
Query: 128 EEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCS-RTIYCTNIDKK 186
A+ L G + P+ V S+ A N + ++ +Y ++
Sbjct: 204 VSSVPLAIGLTGQRVLGVPIIVQASQ---AEKNRAAAMANNLQKGSAGPMRLYVGSLHFN 260
Query: 187 VTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAMAESAIAALN-CSGAVLGSL 243
+T+ ++ FE G ++ ++L+ D + S F+ F+ +E A AL +G L
Sbjct: 261 ITEDMLRGIFEPF-GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 319
Query: 244 PIRV 247
P++V
Sbjct: 320 PMKV 323
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 116 (45.9 bits), Expect = 0.00045, P = 0.00044
Identities = 46/184 (25%), Positives = 80/184 (43%)
Query: 70 NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR--FAFVEFTD 127
N +E RTV+ + ++ L F T G+V D R+ D NS A+VEF D
Sbjct: 144 NLTPEERDARTVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVD 203
Query: 128 EEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCS-RTIYCTNIDKK 186
A+ L G + P+ V S+ A N + ++ +Y ++
Sbjct: 204 VSSVPLAIGLTGQRVLGVPIIVQASQ---AEKNRAAAMANNLQKGSAGPMRLYVGSLHFN 260
Query: 187 VTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAMAESAIAALN-CSGAVLGSL 243
+T+ ++ FE G ++ ++L+ D + S F+ F+ +E A AL +G L
Sbjct: 261 ITEDMLRGIFEPF-GRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 319
Query: 244 PIRV 247
P++V
Sbjct: 320 PMKV 323
>UNIPROTKB|Q6NVP7 [details] [associations]
symbol:pabpn1 "Polyadenylate-binding protein 2"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD HSSP:P33240 CTD:8106
EMBL:CR761856 EMBL:BC067958 RefSeq:NP_001001230.1 UniGene:Str.8918
ProteinModelPortal:Q6NVP7 SMR:Q6NVP7 STRING:Q6NVP7
Ensembl:ENSXETT00000031935 GeneID:407911 KEGG:xtr:407911
Xenbase:XB-GENE-1007049 InParanoid:Q6NVP7 OMA:KELMGSK Bgee:Q6NVP7
Uniprot:Q6NVP7
Length = 296
Score = 112 (44.5 bits), Expect = 0.00048, P = 0.00048
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 129
E R++YV ++D T E+L F CG V + C + G P FA++EF+D+E
Sbjct: 159 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKG---FAYIEFSDKE 215
Query: 130 GARAALSLAGTMLGFYPVRVLPSKT 154
R +L+L ++ ++V+P +T
Sbjct: 216 SVRTSLALDESLFRGRQIKVVPKRT 240
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 115 (45.5 bits), Expect = 0.00050, P = 0.00050
Identities = 50/178 (28%), Positives = 84/178 (47%)
Query: 78 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN---SVLRFAFVEFTDEEGARAA 134
+R +YV +D +VTE+ L +F T G V+ +I D N + FVEF D A A
Sbjct: 89 KRALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERA 148
Query: 135 LSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRT-IYCTNIDKKVTQGDIK 193
+ T+ G R+ S+ VN + + ++ + + I+ ++ +V ++
Sbjct: 149 MQ---TLNGR---RIHQSEIR---VNWAYQSNTANKEDTSNHFHIFVGDLSNEVND-EVL 198
Query: 194 LFFESVCGEVQRLRLLGDYQHS-TR----IAFVEFAMAESAIAALNCSGAVLGSLPIR 246
L S G V R++ D + +R +AF E A AE A+ +++ G LGS IR
Sbjct: 199 LQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMD--GEWLGSRAIR 254
>UNIPROTKB|F1NUL7 [details] [associations]
symbol:SART3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
GO:GO:0006396 GeneTree:ENSGT00550000074656 EMBL:AADN02034959
EMBL:AADN02034960 EMBL:AADN02034961 EMBL:AADN02034962
EMBL:AADN02034963 IPI:IPI00819201 Ensembl:ENSGALT00000038897
ArrayExpress:F1NUL7 Uniprot:F1NUL7
Length = 857
Score = 118 (46.6 bits), Expect = 0.00050, P = 0.00050
Identities = 48/185 (25%), Positives = 89/185 (48%)
Query: 80 TVYVSDIDQQVT--EEQLATLFLTCGQVVDCR-ICGDPNSVLRFAFVEFTDEEGARAALS 136
TV+VS++ +T E +L LF +CG+V R + + + + +VEF DE+ A AL
Sbjct: 599 TVFVSNLSYNMTDPEVKLKELFESCGEVSQVRPVFSNKGTFRGYCYVEFKDEKSALQALG 658
Query: 137 LAGTMLGFYPVRVLPSKTAIAPVNPTF-LPRSEDEREMCSRTIYCTNIDKKVTQGDIKLF 195
+ ++ P+ V P NP F + R E ++ + + T+ ++
Sbjct: 659 MDRKVVEGRPMFVSPCVDKNK--NPDFKVFRYSTTLE--KHKLFISGLPFSCTKEEL--- 711
Query: 196 FESVC---GEVQRLRLLGDYQHSTR-IAFVEFAM-AESAIAALNCSGAVLGSLPIRVSPS 250
E +C G V+ +RL+ + + +A+VE+ A+++ A L G + I+V+ S
Sbjct: 712 -EDICKAHGNVKDIRLVTNRAGKPKGLAYVEYENEAQASQAVLKMDGLTIKEHVIKVAIS 770
Query: 251 KTPVR 255
P+R
Sbjct: 771 NPPLR 775
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 113 (44.8 bits), Expect = 0.00051, P = 0.00051
Identities = 56/211 (26%), Positives = 95/211 (45%)
Query: 55 NGYSQGKRRMNC----RTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRI 110
NG S R NC +T A D + + V+ + Q +T+E+ +LF + G++ C++
Sbjct: 20 NGPSSNNR--NCPSPMQTGAATDDS--KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL 75
Query: 111 CGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFL-PRS 167
D L + FV + D + A A++ T+ G +R L +KT + ++ P S
Sbjct: 76 VRDKITGQSLGYGFVNYIDPKDAEKAIN---TLNG---LR-LQTKT----IKVSYARPSS 124
Query: 168 EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH--STRIAFVEFAM 225
R+ +Y + + K +TQ +++ F S G + R+L D S + F+ F
Sbjct: 125 ASIRDA---NLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDK 180
Query: 226 ---AESAIAALNCSGAVLGSLPIRVSPSKTP 253
AE AI LN + PI V + P
Sbjct: 181 RIEAEEAIKGLNGQKPSGATEPITVKFANNP 211
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 113 (44.8 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 48/178 (26%), Positives = 76/178 (42%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEFTDEEGARAALSL 137
++YV D+ Q VTE L F G ++ R+C D L +A+V F A AL
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD- 70
Query: 138 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFE 197
TM F V+ + PV + R R+ I+ N+DK + D K ++
Sbjct: 71 --TM-NF---DVIKGR----PVRIMWSQRDPSLRKSGVGNIFIKNLDKSI---DNKALYD 117
Query: 198 --SVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKT 252
S G + +++ D S FV F E+A A++ +G +L + V K+
Sbjct: 118 TFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKS 175
Score = 44 (20.5 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 254 VRPRAPRPP 262
+RP APRPP
Sbjct: 452 IRPTAPRPP 460
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 113 (44.8 bits), Expect = 0.00055, P = 0.00055
Identities = 56/211 (26%), Positives = 95/211 (45%)
Query: 55 NGYSQGKRRMNC----RTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRI 110
NG S R NC +T A D + + V+ + Q +T+E+ +LF + G++ C++
Sbjct: 22 NGPSSNNR--NCPSPMQTGAATDDS--KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL 77
Query: 111 CGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFL-PRS 167
D L + FV + D + A A++ T+ G +R L +KT + ++ P S
Sbjct: 78 VRDKITGQSLGYGFVNYIDPKDAEKAIN---TLNG---LR-LQTKT----IKVSYARPSS 126
Query: 168 EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH--STRIAFVEFAM 225
R+ +Y + + K +TQ +++ F S G + R+L D S + F+ F
Sbjct: 127 ASIRDA---NLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDK 182
Query: 226 ---AESAIAALNCSGAVLGSLPIRVSPSKTP 253
AE AI LN + PI V + P
Sbjct: 183 RIEAEEAIKGLNGQKPSGATEPITVKFANNP 213
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 113 (44.8 bits), Expect = 0.00055, P = 0.00055
Identities = 56/211 (26%), Positives = 95/211 (45%)
Query: 55 NGYSQGKRRMNC----RTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRI 110
NG S R NC +T A D + + V+ + Q +T+E+ +LF + G++ C++
Sbjct: 22 NGPSSNNR--NCPSPMQTGAATDDS--KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL 77
Query: 111 CGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFL-PRS 167
D L + FV + D + A A++ T+ G +R L +KT + ++ P S
Sbjct: 78 VRDKITGQSLGYGFVNYIDPKDAEKAIN---TLNG---LR-LQTKT----IKVSYARPSS 126
Query: 168 EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH--STRIAFVEFAM 225
R+ +Y + + K +TQ +++ F S G + R+L D S + F+ F
Sbjct: 127 ASIRDA---NLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDK 182
Query: 226 ---AESAIAALNCSGAVLGSLPIRVSPSKTP 253
AE AI LN + PI V + P
Sbjct: 183 RIEAEEAIKGLNGQKPSGATEPITVKFANNP 213
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 113 (44.8 bits), Expect = 0.00056, P = 0.00056
Identities = 56/211 (26%), Positives = 95/211 (45%)
Query: 55 NGYSQGKRRMNC----RTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRI 110
NG S R NC +T A D + + V+ + Q +T+E+ +LF + G++ C++
Sbjct: 27 NGPSSNSR--NCPSPMQTGAATDDS--KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL 82
Query: 111 CGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFL-PRS 167
D L + FV + D + A A++ T+ G +R L +KT + ++ P S
Sbjct: 83 VRDKITGQSLGYGFVNYIDPKDAEKAIN---TLNG---LR-LQTKT----IKVSYARPSS 131
Query: 168 EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH--STRIAFVEFAM 225
R+ +Y + + K +TQ +++ F S G + R+L D S + F+ F
Sbjct: 132 ASIRDA---NLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDK 187
Query: 226 ---AESAIAALNCSGAVLGSLPIRVSPSKTP 253
AE AI LN + PI V + P
Sbjct: 188 RIEAEEAIKGLNGQKPSGATEPITVKFANNP 218
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 111 (44.1 bits), Expect = 0.00056, P = 0.00056
Identities = 50/186 (26%), Positives = 81/186 (43%)
Query: 79 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLA 138
+T+YV ++ + VTE + LF G +C++ D + FVEF + A AAL+
Sbjct: 3 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALA-- 60
Query: 139 GTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFES 198
M G R + K VN P S+ + ++ ++ ++T DIK F
Sbjct: 61 -AMNG----RKIMGKEV--KVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAP 113
Query: 199 VCGEVQRLRLLGDYQ--HSTRIAFVEFAM---AESAIAALNCSGAVLGSLPIRVS-PSKT 252
G + R++ D S FV F AE+AI + G LG IR + ++
Sbjct: 114 F-GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG--GQWLGGRQIRTNWATRK 170
Query: 253 PVRPRA 258
P P++
Sbjct: 171 PPAPKS 176
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 113 (44.8 bits), Expect = 0.00057, P = 0.00057
Identities = 56/211 (26%), Positives = 95/211 (45%)
Query: 55 NGYSQGKRRMNC----RTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRI 110
NG S R NC +T A D + + V+ + Q +T+E+ +LF + G++ C++
Sbjct: 15 NGPSSNNR--NCPSPMQTGAATDDS--KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL 70
Query: 111 CGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFL-PRS 167
D L + FV + D + A A++ T+ G +R L +KT + ++ P S
Sbjct: 71 VRDKITGQSLGYGFVNYIDPKDAEKAIN---TLNG---LR-LQTKT----IKVSYARPSS 119
Query: 168 EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH--STRIAFVEFAM 225
R+ +Y + + K +TQ +++ F S G + R+L D S + F+ F
Sbjct: 120 ASIRDA---NLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDK 175
Query: 226 ---AESAIAALNCSGAVLGSLPIRVSPSKTP 253
AE AI LN + PI V + P
Sbjct: 176 RIEAEEAIKGLNGQKPSGATEPITVKFANNP 206
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 113 (44.8 bits), Expect = 0.00057, P = 0.00057
Identities = 56/211 (26%), Positives = 95/211 (45%)
Query: 55 NGYSQGKRRMNC----RTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRI 110
NG S R NC +T A D + + V+ + Q +T+E+ +LF + G++ C++
Sbjct: 15 NGPSSNNR--NCPSPMQTGAATDDS--KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL 70
Query: 111 CGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFL-PRS 167
D L + FV + D + A A++ T+ G +R L +KT + ++ P S
Sbjct: 71 VRDKITGQSLGYGFVNYIDPKDAEKAIN---TLNG---LR-LQTKT----IKVSYARPSS 119
Query: 168 EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH--STRIAFVEFAM 225
R+ +Y + + K +TQ +++ F S G + R+L D S + F+ F
Sbjct: 120 ASIRDA---NLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDK 175
Query: 226 ---AESAIAALNCSGAVLGSLPIRVSPSKTP 253
AE AI LN + PI V + P
Sbjct: 176 RIEAEEAIKGLNGQKPSGATEPITVKFANNP 206
>MGI|MGI:1921361 [details] [associations]
symbol:Rbm19 "RNA binding motif protein 19" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1921361 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
CTD:9904 HOVERGEN:HBG055637 OrthoDB:EOG4D7Z56 ChiTaRS:RBM19
EMBL:BC025619 EMBL:BC034010 EMBL:AK004657 EMBL:AK053511
IPI:IPI00165762 IPI:IPI00475221 RefSeq:NP_083038.1 UniGene:Mm.41022
PDB:1WHW PDB:1WHX PDB:2CPF PDB:2CPH PDBsum:1WHW PDBsum:1WHX
PDBsum:2CPF PDBsum:2CPH ProteinModelPortal:Q8R3C6 SMR:Q8R3C6
STRING:Q8R3C6 PhosphoSite:Q8R3C6 PaxDb:Q8R3C6 PRIDE:Q8R3C6
Ensembl:ENSMUST00000031590 GeneID:74111 KEGG:mmu:74111
UCSC:uc008zha.1 InParanoid:Q8R3C6 EvolutionaryTrace:Q8R3C6
NextBio:339804 Bgee:Q8R3C6 CleanEx:MM_RBM19 Genevestigator:Q8R3C6
Uniprot:Q8R3C6
Length = 952
Score = 118 (46.6 bits), Expect = 0.00057, P = 0.00057
Identities = 49/188 (26%), Positives = 81/188 (43%)
Query: 58 SQGKRRMNCRTSNAQQDEVIRR-TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS 116
S GK +++E I T+++ +++ TEE L +F G + C I N
Sbjct: 700 STGKMEEEEEEEEEEEEESIPGCTLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNK 759
Query: 117 V-----LRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDE 170
+ F FVE+ E A+ AL L G + + + V S+ A P + + +
Sbjct: 760 AGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPK 819
Query: 171 REMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRL----LGDYQHSTRIAFVEFAMA 226
++ S+ I NI + Q +I+ F S GE++ +RL G H FV+F
Sbjct: 820 KQTTSK-ILVRNIPFQANQREIRELF-STFGELKTVRLPKKMTGTGAHRG-FGFVDFITK 876
Query: 227 ESAIAALN 234
+ A A N
Sbjct: 877 QDAKKAFN 884
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 110 (43.8 bits), Expect = 0.00057, P = 0.00057
Identities = 56/183 (30%), Positives = 83/183 (45%)
Query: 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGAR 132
E RR VY+ +I + VT EQL L G V ++ D S RF F E A
Sbjct: 73 EAARR-VYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDAN 131
Query: 133 AALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSR-TIYCTNIDKKVTQG 190
A + L G + ++V ++ IA + +SED + S +Y N+ K VT+
Sbjct: 132 AVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKE 191
Query: 191 DIKLFFESVCGEVQRLRL--LGDYQHSTRIAFVEFAM---AESAIAALNCSGAVLGSLPI 245
++ F S G+V ++ + ST FV F+ E+AI ALN S +L I
Sbjct: 192 MLENLF-SEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNS--LLEGQKI 248
Query: 246 RVS 248
RV+
Sbjct: 249 RVN 251
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 113 (44.8 bits), Expect = 0.00058, P = 0.00058
Identities = 56/211 (26%), Positives = 95/211 (45%)
Query: 55 NGYSQGKRRMNC----RTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRI 110
NG S R NC +T A D + + V+ + Q +T+E+ +LF + G++ C++
Sbjct: 22 NGPSSNNR--NCPSPMQTGAATDDS--KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL 77
Query: 111 CGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFL-PRS 167
D L + FV + D + A A++ T+ G +R L +KT + ++ P S
Sbjct: 78 VRDKITGQSLGYGFVNYIDPKDAEKAIN---TLNG---LR-LQTKT----IKVSYARPSS 126
Query: 168 EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH--STRIAFVEFAM 225
R+ +Y + + K +TQ +++ F S G + R+L D S + F+ F
Sbjct: 127 ASIRDA---NLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDK 182
Query: 226 ---AESAIAALNCSGAVLGSLPIRVSPSKTP 253
AE AI LN + PI V + P
Sbjct: 183 RIEAEEAIKGLNGQKPSGATEPITVKFANNP 213
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 113 (44.8 bits), Expect = 0.00059, P = 0.00059
Identities = 56/211 (26%), Positives = 95/211 (45%)
Query: 55 NGYSQGKRRMNC----RTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRI 110
NG S R NC +T A D + + V+ + Q +T+E+ +LF + G++ C++
Sbjct: 38 NGPSSNNR--NCPSPMQTGAATDDS--KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL 93
Query: 111 CGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFL-PRS 167
D L + FV + D + A A++ T+ G +R L +KT + ++ P S
Sbjct: 94 VRDKITGQSLGYGFVNYIDPKDAEKAIN---TLNG---LR-LQTKT----IKVSYARPSS 142
Query: 168 EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH--STRIAFVEFAM 225
R+ +Y + + K +TQ +++ F S G + R+L D S + F+ F
Sbjct: 143 ASIRDA---NLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDK 198
Query: 226 ---AESAIAALNCSGAVLGSLPIRVSPSKTP 253
AE AI LN + PI V + P
Sbjct: 199 RIEAEEAIKGLNGQKPSGATEPITVKFANNP 229
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 113 (44.8 bits), Expect = 0.00059, P = 0.00059
Identities = 56/211 (26%), Positives = 95/211 (45%)
Query: 55 NGYSQGKRRMNC----RTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRI 110
NG S R NC +T A D + + V+ + Q +T+E+ +LF + G++ C++
Sbjct: 26 NGPSSNNR--NCPSPMQTGAATDDS--KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL 81
Query: 111 CGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFL-PRS 167
D L + FV + D + A A++ T+ G +R L +KT + ++ P S
Sbjct: 82 VRDKITGQSLGYGFVNYIDPKDAEKAIN---TLNG---LR-LQTKT----IKVSYARPSS 130
Query: 168 EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH--STRIAFVEFAM 225
R+ +Y + + K +TQ +++ F S G + R+L D S + F+ F
Sbjct: 131 ASIRDA---NLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDK 186
Query: 226 ---AESAIAALNCSGAVLGSLPIRVSPSKTP 253
AE AI LN + PI V + P
Sbjct: 187 RIEAEEAIKGLNGQKPSGATEPITVKFANNP 217
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 113 (44.8 bits), Expect = 0.00060, P = 0.00060
Identities = 56/211 (26%), Positives = 95/211 (45%)
Query: 55 NGYSQGKRRMNC----RTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRI 110
NG S R NC +T A D + + V+ + Q +T+E+ +LF + G++ C++
Sbjct: 27 NGPSSNNR--NCPSPMQTGAATDDS--KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKL 82
Query: 111 CGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFL-PRS 167
D L + FV + D + A A++ T+ G +R L +KT + ++ P S
Sbjct: 83 VRDKITGQSLGYGFVNYIDPKDAEKAIN---TLNG---LR-LQTKT----IKVSYARPSS 131
Query: 168 EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH--STRIAFVEFAM 225
R+ +Y + + K +TQ +++ F S G + R+L D S + F+ F
Sbjct: 132 ASIRDA---NLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDK 187
Query: 226 ---AESAIAALNCSGAVLGSLPIRVSPSKTP 253
AE AI LN + PI V + P
Sbjct: 188 RIEAEEAIKGLNGQKPSGATEPITVKFANNP 218
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 113 (44.8 bits), Expect = 0.00061, P = 0.00061
Identities = 53/202 (26%), Positives = 94/202 (46%)
Query: 64 MNCRT---SNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP---NSV 117
+NC + SN +D + + V+ + Q +T+E+L +LF + G++ C++ D
Sbjct: 50 INCSSPVESNNTEDS--KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQS 107
Query: 118 LRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFL-PRSEDEREMCSR 176
L + FV + D + A A++ T+ G +R L +KT + ++ P S R+
Sbjct: 108 LGYGFVNYIDPKDAEKAIN---TLNG---LR-LQTKT----IKVSYARPSSASIRDA--- 153
Query: 177 TIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH--STRIAFVEFAM---AESAIA 231
+Y + + K +TQ +++ F S G + R+L D S + F+ F AE AI
Sbjct: 154 NLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 212
Query: 232 ALNCSGAVLGSLPIRVSPSKTP 253
LN + PI V + P
Sbjct: 213 GLNGQKPPGATEPITVKFANNP 234
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 112 (44.5 bits), Expect = 0.00061, P = 0.00061
Identities = 55/207 (26%), Positives = 96/207 (46%)
Query: 55 NGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP 114
NGY +CR D++ R + V+ + Q +T+++L +LF + G+V ++ D
Sbjct: 11 NGYEDHMAE-DCR------DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDK 63
Query: 115 --NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFL-PRSEDER 171
L + FV + + A A++ T+ G +R L SKT + ++ P SE +
Sbjct: 64 VAGHSLGYGFVNYVTAKDAERAIN---TLNG---LR-LQSKT----IKVSYARPSSEVIK 112
Query: 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH--STRIAFVEF---AMA 226
+ +Y + + + +TQ D++ F S G + R+L D S +AF+ F + A
Sbjct: 113 DA---NLYISGLPRTMTQKDVEDMF-SRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEA 168
Query: 227 ESAIAALNCSGAVLGSLPIRVSPSKTP 253
E AI + N S PI V + P
Sbjct: 169 EEAITSFNGHKPPGSSEPITVKFAANP 195
>UNIPROTKB|Q9DDY9 [details] [associations]
symbol:pabpn1-a "Polyadenylate-binding protein 2-A"
species:8355 "Xenopus laevis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0006378 HOVERGEN:HBG107480 GO:GO:0008143
EMBL:AF257236 EMBL:AY382836 EMBL:BC073657 RefSeq:NP_001082057.1
UniGene:Xl.55103 HSSP:P33240 ProteinModelPortal:Q9DDY9 SMR:Q9DDY9
PRIDE:Q9DDY9 GeneID:398201 KEGG:xla:398201 CTD:398201
Xenbase:XB-GENE-6251817 Uniprot:Q9DDY9
Length = 296
Score = 111 (44.1 bits), Expect = 0.00063, P = 0.00063
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFVEFTDEE 129
E R++YV ++D T E+L F CG V + C + G P FA++EF D+E
Sbjct: 159 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKG---FAYIEFCDKE 215
Query: 130 GARAALSLAGTMLGFYPVRVLPSKT 154
R +L+L ++ ++V+P +T
Sbjct: 216 SVRTSLALDESLFRGRQIKVVPKRT 240
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 114 (45.2 bits), Expect = 0.00065, P = 0.00065
Identities = 52/174 (29%), Positives = 77/174 (44%)
Query: 78 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSV-LRFAFVEFTDEEGA-RAAL 135
+R +YV +D +VTE+ L +F T G V + +I D N+ + FVE+ D A RA
Sbjct: 84 KRALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAADRAMQ 143
Query: 136 SLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLF 195
+L G + +RV + A + T ED I+ ++ +V +
Sbjct: 144 TLNGRRVHQSEIRV--NWAYQAATSAT----KEDTSNHFH--IFVGDLSNEVNDEVLTQA 195
Query: 196 FESVCGEVQRLRLLGDYQ--HSTRIAFVEFAMAESAIAALNC-SGAVLGSLPIR 246
F SV G V R++ D + S FV F A AL+ G LGS IR
Sbjct: 196 F-SVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAIR 248
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 112 (44.5 bits), Expect = 0.00065, P = 0.00065
Identities = 51/198 (25%), Positives = 92/198 (46%)
Query: 65 NCRTS-NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFA 121
NC + ++ E + + V+ + Q +T+E+L +LF + G++ C++ D L +
Sbjct: 24 NCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYG 83
Query: 122 FVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFL-PRSEDEREMCSRTIYC 180
FV + D + A A++ T+ G +R L +KT + ++ P S R+ +Y
Sbjct: 84 FVNYIDPKDAEKAIN---TLNG---LR-LQTKT----IKVSYARPSSASIRDA---NLYV 129
Query: 181 TNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH--STRIAFVEFAM---AESAIAALNC 235
+ + K +TQ +++ F S G + R+L D S + F+ F AE AI LN
Sbjct: 130 SGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 236 SGAVLGSLPIRVSPSKTP 253
+ PI V + P
Sbjct: 189 QKPPGATEPITVKFANNP 206
>UNIPROTKB|A7MB95 [details] [associations]
symbol:CUGBP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0042835 "BRE binding" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484 HOVERGEN:HBG107646
KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:PTLYNQS EMBL:DAAA02041602
EMBL:DAAA02041603 EMBL:DAAA02041604 EMBL:BC151433 IPI:IPI00824850
RefSeq:NP_001094682.1 UniGene:Bt.16531 SMR:A7MB95 STRING:A7MB95
Ensembl:ENSBTAT00000003274 GeneID:540475 KEGG:bta:540475
InParanoid:A7MB95 NextBio:20878658 Uniprot:A7MB95
Length = 486
Score = 114 (45.2 bits), Expect = 0.00066, P = 0.00066
Identities = 53/198 (26%), Positives = 88/198 (44%)
Query: 64 MNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD----PNSVLR 119
MN + Q ++ ++V + + +E+ L LF G V + + D P
Sbjct: 1 MNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKG 60
Query: 120 FAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIY 179
FV F +AAL + + ++VLP + P SE + R ++
Sbjct: 61 CCFVTFYTR---KAALEAQNAL---HNMKVLPGMHHPIQMKPA---DSEKNNAVEDRKLF 111
Query: 180 CTNIDKKVTQGDIKLFFESVCGEVQRLRLL-GDYQHSTRIAFVEF---AMAESAIAALNC 235
I KK T+ DI++ F S G+++ R+L G S AFV F AMA++AI A++
Sbjct: 112 IGMISKKCTENDIRVMFSSF-GQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQ 170
Query: 236 SGAVLG-SLPIRVSPSKT 252
+ + G S P+ V + T
Sbjct: 171 AQTMEGCSSPMVVKFADT 188
>UNIPROTKB|Q92879 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0031369
"translation initiation factor binding" evidence=IEA] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376
"mRNA splice site selection" evidence=ISS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0042835 "BRE binding" evidence=IDA] [GO:0016246
"RNA interference" evidence=NAS] [GO:0007281 "germ cell
development" evidence=NAS] [GO:0009790 "embryo development"
evidence=NAS] [GO:0030529 "ribonucleoprotein complex" evidence=NAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=NAS] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0043484 "regulation of RNA
splicing" evidence=IDA] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0003729 "mRNA binding" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 EMBL:CH471064 GO:GO:0016246
GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0003676 GO:GO:0009790 GO:GO:0030529
GO:GO:0007281 GO:GO:0043484 GO:GO:0000900 HOVERGEN:HBG107646
KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X EMBL:U63289 EMBL:AF248648 EMBL:AF267533
EMBL:AF267534 EMBL:AJ007988 EMBL:AK304430 EMBL:AB210019
EMBL:AC090559 EMBL:BC031079 IPI:IPI00034015 IPI:IPI00218388
IPI:IPI00218389 IPI:IPI00853009 IPI:IPI00956101
RefSeq:NP_001020767.1 RefSeq:NP_001166110.1 RefSeq:NP_001166111.1
RefSeq:NP_006551.1 RefSeq:NP_941989.1 UniGene:Hs.595333 PDB:2CPZ
PDB:2DHS PDB:2RQ4 PDB:2RQC PDB:3NMR PDB:3NNA PDB:3NNC PDB:3NNH
PDBsum:2CPZ PDBsum:2DHS PDBsum:2RQ4 PDBsum:2RQC PDBsum:3NMR
PDBsum:3NNA PDBsum:3NNC PDBsum:3NNH ProteinModelPortal:Q92879
SMR:Q92879 IntAct:Q92879 MINT:MINT-1382906 STRING:Q92879
PhosphoSite:Q92879 DMDM:17374605 PaxDb:Q92879 PRIDE:Q92879
DNASU:10658 Ensembl:ENST00000310513 Ensembl:ENST00000358597
Ensembl:ENST00000361904 Ensembl:ENST00000395290
Ensembl:ENST00000395292 Ensembl:ENST00000532048 GeneID:10658
KEGG:hsa:10658 UCSC:uc001nfk.2 UCSC:uc001nfl.3 UCSC:uc001nfm.3
UCSC:uc001nfn.3 GeneCards:GC11M047602 HGNC:HGNC:2549 HPA:CAB016114
MIM:601074 neXtProt:NX_Q92879 PharmGKB:PA27045 InParanoid:Q92879
PhylomeDB:Q92879 ChiTaRS:CELF1 EvolutionaryTrace:Q92879
GenomeRNAi:10658 NextBio:40521 ArrayExpress:Q92879 Bgee:Q92879
CleanEx:HS_CUGBP1 Genevestigator:Q92879 GermOnline:ENSG00000149187
GO:GO:0042835 GO:GO:0006376 Uniprot:Q92879
Length = 486
Score = 114 (45.2 bits), Expect = 0.00066, P = 0.00066
Identities = 53/198 (26%), Positives = 88/198 (44%)
Query: 64 MNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD----PNSVLR 119
MN + Q ++ ++V + + +E+ L LF G V + + D P
Sbjct: 1 MNGTLDHPDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKG 60
Query: 120 FAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIY 179
FV F +AAL + + ++VLP + P SE + R ++
Sbjct: 61 CCFVTFYTR---KAALEAQNAL---HNMKVLPGMHHPIQMKPA---DSEKNNAVEDRKLF 111
Query: 180 CTNIDKKVTQGDIKLFFESVCGEVQRLRLL-GDYQHSTRIAFVEF---AMAESAIAALNC 235
I KK T+ DI++ F S G+++ R+L G S AFV F AMA++AI A++
Sbjct: 112 IGMISKKCTENDIRVMFSSF-GQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQ 170
Query: 236 SGAVLG-SLPIRVSPSKT 252
+ + G S P+ V + T
Sbjct: 171 AQTMEGCSSPMVVKFADT 188
>ASPGD|ASPL0000008076 [details] [associations]
symbol:AN6004 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001301 EMBL:AACD01000102 eggNOG:NOG67475
HOGENOM:HOG000163072 OrthoDB:EOG4C5GTR RefSeq:XP_663608.1
ProteinModelPortal:Q5B0C6 EnsemblFungi:CADANIAT00007014
GeneID:2871044 KEGG:ani:AN6004.2 OMA:HQLRANA Uniprot:Q5B0C6
Length = 270
Score = 110 (43.8 bits), Expect = 0.00067, P = 0.00067
Identities = 33/100 (33%), Positives = 52/100 (52%)
Query: 78 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRIC---GDPNSVLRFAFVEFTDEEGARAA 134
R TV+VS+ID +E+++ F CG++V + G+P S L+ A V F + A+ A
Sbjct: 4 RTTVHVSNIDPSTSEKEVQDFFSFCGKIVSISVTPTSGEPGS-LKSATVTFEKDAAAKTA 62
Query: 135 LSLAGTMLGFYPVRVLPSKTA--IAPVNPTFLPRSEDERE 172
L L T LG V V ++T IA + ++DE +
Sbjct: 63 LLLDQTQLGPSVVTVKAAQTLDEIAGEHSATAAEAKDENQ 102
>TAIR|locus:2028205 [details] [associations]
symbol:AT1G45100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00546918 RefSeq:NP_175125.1 UniGene:At.52038
ProteinModelPortal:F4HPM6 SMR:F4HPM6 PRIDE:F4HPM6
EnsemblPlants:AT1G45100.1 GeneID:841077 KEGG:ath:AT1G45100
OMA:SAYGANK ArrayExpress:F4HPM6 Uniprot:F4HPM6
Length = 497
Score = 114 (45.2 bits), Expect = 0.00069, P = 0.00069
Identities = 51/186 (27%), Positives = 78/186 (41%)
Query: 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCR-ICGDPNSVLRFAFVEFTDEEGARA 133
+ + V VS++ + F QVV R + + + FVEF GA
Sbjct: 154 DFVDEVVIVSNLSPLTKIAHIKGFFNGVAQVVSVRLVVNHEGKHVGYGFVEFASAYGANK 213
Query: 134 ALSLA-GTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDI 192
AL G L + + ++ + P F E ++T++ N+ + DI
Sbjct: 214 ALEEKNGEYLHNHKILLMKGHES-----PGFA-----EEAAITKTLFVANLRDSIQISDI 263
Query: 193 KLFFESVCGEVQRLRLLGDYQHS-TRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSK 251
FF+ V GEV +RL+ + Q FVEFA A A AL +G L + I + +K
Sbjct: 264 INFFKDV-GEVVHVRLIVNSQGKHAGWGFVEFASANEAEKALVKNGEYLHNYKISLDGAK 322
Query: 252 T-PVRP 256
T P RP
Sbjct: 323 TAPHRP 328
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 112 (44.5 bits), Expect = 0.00069, P = 0.00069
Identities = 51/198 (25%), Positives = 92/198 (46%)
Query: 65 NCRTS-NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFA 121
NC + ++ E + + V+ + Q +T+E+L +LF + G++ C++ D L +
Sbjct: 24 NCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYG 83
Query: 122 FVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFL-PRSEDEREMCSRTIYC 180
FV + D + A A++ T+ G +R L +KT + ++ P S R+ +Y
Sbjct: 84 FVNYIDPKDAEKAIN---TLNG---LR-LQTKT----IKVSYARPSSASIRDA---NLYV 129
Query: 181 TNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH--STRIAFVEFAM---AESAIAALNC 235
+ + K +TQ +++ F S G + R+L D S + F+ F AE AI LN
Sbjct: 130 SGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 236 SGAVLGSLPIRVSPSKTP 253
+ PI V + P
Sbjct: 189 QKPPGATEPITVKFANNP 206
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 112 (44.5 bits), Expect = 0.00070, P = 0.00070
Identities = 51/198 (25%), Positives = 92/198 (46%)
Query: 65 NCRTS-NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFA 121
NC + ++ E + + V+ + Q +T+E+L +LF + G++ C++ D L +
Sbjct: 24 NCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYG 83
Query: 122 FVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFL-PRSEDEREMCSRTIYC 180
FV + D + A A++ T+ G +R L +KT + ++ P S R+ +Y
Sbjct: 84 FVNYIDPKDAEKAIN---TLNG---LR-LQTKT----IKVSYARPSSASIRDA---NLYV 129
Query: 181 TNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH--STRIAFVEFAM---AESAIAALNC 235
+ + K +TQ +++ F S G + R+L D S + F+ F AE AI LN
Sbjct: 130 SGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Query: 236 SGAVLGSLPIRVSPSKTP 253
+ PI V + P
Sbjct: 189 QKPPGATEPITVKFANNP 206
>UNIPROTKB|F5H606 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01013862 ProteinModelPortal:F5H606 SMR:F5H606
Ensembl:ENST00000542140 ArrayExpress:F5H606 Bgee:F5H606
Uniprot:F5H606
Length = 123
Score = 91 (37.1 bits), Expect = 0.00070, P = 0.00070
Identities = 25/73 (34%), Positives = 40/73 (54%)
Query: 79 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAALSL 137
RT++V +++ +VTEE L LF G V+ +I D + + FAFV F E A++L
Sbjct: 10 RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNL 69
Query: 138 A-GTMLGFYPVRV 149
G L P+++
Sbjct: 70 LNGIKLYGRPIKI 82
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 115 (45.5 bits), Expect = 0.00071, P = 0.00071
Identities = 50/188 (26%), Positives = 77/188 (40%)
Query: 70 NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEFTD 127
NA ++YV D+ VTE L F G V+ R+C D L +A+V F
Sbjct: 2 NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 128 EEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKV 187
A AL TM F V+ K P+ + R R+ ++ N+DK +
Sbjct: 62 PADAERALD---TM-NF---DVIKGK----PIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 110
Query: 188 TQGDIKLFFE--SVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLP 244
D K ++ S G + +++ D S AFV F E+A A+ +G +L
Sbjct: 111 ---DNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRK 167
Query: 245 IRVSPSKT 252
+ V K+
Sbjct: 168 VFVGRFKS 175
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 112 (44.5 bits), Expect = 0.00073, P = 0.00073
Identities = 55/210 (26%), Positives = 96/210 (45%)
Query: 55 NGYSQGKRRMNCRT---SNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRIC 111
NG S R NC + + A D+ + + V+ + Q +T+E+ +LF + G++ C++
Sbjct: 27 NGPSSNNR--NCPSPMQTGATTDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLV 83
Query: 112 GDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFL-PRSE 168
D L + FV + D + A A++ T+ G +R L +KT + ++ P S
Sbjct: 84 RDKITGQSLGYGFVNYIDPKDAEKAIN---TLNG---LR-LQTKT----IKVSYARPSSA 132
Query: 169 DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH--STRIAFVEFAM- 225
R+ +Y + + K +TQ +++ F S G + R+L D S + F+ F
Sbjct: 133 SIRDA---NLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKR 188
Query: 226 --AESAIAALNCSGAVLGSLPIRVSPSKTP 253
AE AI LN + PI V + P
Sbjct: 189 IEAEEAIKGLNGQKPSGATEPITVKFANNP 218
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 115 (45.5 bits), Expect = 0.00074, P = 0.00074
Identities = 50/188 (26%), Positives = 77/188 (40%)
Query: 70 NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEFTD 127
NA ++YV D+ VTE L F G V+ R+C D L +A+V F
Sbjct: 2 NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 128 EEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKV 187
A AL TM F V+ K P+ + R R+ ++ N+DK +
Sbjct: 62 PADAERALD---TM-NF---DVIKGK----PIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 110
Query: 188 TQGDIKLFFE--SVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLP 244
D K ++ S G + +++ D S AFV F E+A A+ +G +L
Sbjct: 111 ---DNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRK 167
Query: 245 IRVSPSKT 252
+ V K+
Sbjct: 168 VFVGRFKS 175
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 115 (45.5 bits), Expect = 0.00074, P = 0.00074
Identities = 50/188 (26%), Positives = 77/188 (40%)
Query: 70 NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEFTD 127
NA ++YV D+ VTE L F G V+ R+C D L +A+V F
Sbjct: 2 NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 128 EEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKV 187
A AL TM F V+ K P+ + R R+ ++ N+DK +
Sbjct: 62 PADAERALD---TM-NF---DVIKGK----PIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 110
Query: 188 TQGDIKLFFE--SVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLP 244
D K ++ S G + +++ D S AFV F E+A A+ +G +L
Sbjct: 111 ---DNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRK 167
Query: 245 IRVSPSKT 252
+ V K+
Sbjct: 168 VFVGRFKS 175
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 115 (45.5 bits), Expect = 0.00074, P = 0.00074
Identities = 50/188 (26%), Positives = 77/188 (40%)
Query: 70 NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEFTD 127
NA ++YV D+ VTE L F G V+ R+C D L +A+V F
Sbjct: 2 NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 128 EEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKV 187
A AL TM F V+ K P+ + R R+ ++ N+DK +
Sbjct: 62 PADAERALD---TM-NF---DVIKGK----PIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 110
Query: 188 TQGDIKLFFE--SVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLP 244
D K ++ S G + +++ D S AFV F E+A A+ +G +L
Sbjct: 111 ---DNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRK 167
Query: 245 IRVSPSKT 252
+ V K+
Sbjct: 168 VFVGRFKS 175
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 115 (45.5 bits), Expect = 0.00076, P = 0.00076
Identities = 50/188 (26%), Positives = 77/188 (40%)
Query: 70 NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEFTD 127
NA ++YV D+ VTE L F G V+ R+C D L +A+V F
Sbjct: 2 NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 128 EEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKV 187
A AL TM F V+ K P+ + R R+ ++ N+DK +
Sbjct: 62 PADAERALD---TM-NF---DVIKGK----PIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 110
Query: 188 TQGDIKLFFE--SVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLP 244
D K ++ S G + +++ D S AFV F E+A A+ +G +L
Sbjct: 111 ---DNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRK 167
Query: 245 IRVSPSKT 252
+ V K+
Sbjct: 168 VFVGRFKS 175
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 115 (45.5 bits), Expect = 0.00076, P = 0.00076
Identities = 50/188 (26%), Positives = 77/188 (40%)
Query: 70 NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEFTD 127
NA ++YV D+ VTE L F G V+ R+C D L +A+V F
Sbjct: 2 NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 128 EEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKV 187
A AL TM F V+ K P+ + R R+ ++ N+DK +
Sbjct: 62 PADAERALD---TM-NF---DVIKGK----PIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 110
Query: 188 TQGDIKLFFE--SVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLP 244
D K ++ S G + +++ D S AFV F E+A A+ +G +L
Sbjct: 111 ---DNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRK 167
Query: 245 IRVSPSKT 252
+ V K+
Sbjct: 168 VFVGRFKS 175
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 112 (44.5 bits), Expect = 0.00076, P = 0.00076
Identities = 55/210 (26%), Positives = 96/210 (45%)
Query: 55 NGYSQGKRRMNCRT---SNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRIC 111
NG S R NC + + A D+ + + V+ + Q +T+E+ +LF + G++ C++
Sbjct: 22 NGPSSNNR--NCPSPMQTGATTDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLV 78
Query: 112 GDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFL-PRSE 168
D L + FV + D + A A++ T+ G +R L +KT + ++ P S
Sbjct: 79 RDKITGQSLGYGFVNYIDPKDAEKAIN---TLNG---LR-LQTKT----IKVSYARPSSA 127
Query: 169 DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH--STRIAFVEFAM- 225
R+ +Y + + K +TQ +++ F S G + R+L D S + F+ F
Sbjct: 128 SIRDA---NLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKR 183
Query: 226 --AESAIAALNCSGAVLGSLPIRVSPSKTP 253
AE AI LN + PI V + P
Sbjct: 184 IEAEEAIKGLNGQKPSGATEPITVKFANNP 213
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 112 (44.5 bits), Expect = 0.00078, P = 0.00078
Identities = 50/194 (25%), Positives = 86/194 (44%)
Query: 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 132
+DE+ +T+YV ++ + VTE + LF G +C++ D + FVEF + A
Sbjct: 2 EDEM-PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAA 60
Query: 133 AALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS-EDEREMCSRTIYCTNIDKKVTQG 190
AAL+ + G + V+V + T + T +R ++ ++ ++T
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 191 DIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAM---AESAIAALNCSGAVLGSLPI 245
DIK F G + R++ D S FV F AE+AI + G LG I
Sbjct: 121 DIKAAFAPF-GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG--GQWLGGRQI 177
Query: 246 RVS-PSKTPVRPRA 258
R + ++ P P++
Sbjct: 178 RTNWATRKPPAPKS 191
>UNIPROTKB|E1B908 [details] [associations]
symbol:E1B908 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:RCGEVHR
GeneTree:ENSGT00390000001517 EMBL:DAAA02046256 IPI:IPI00826522
Ensembl:ENSBTAT00000032540 Uniprot:E1B908
Length = 290
Score = 110 (43.8 bits), Expect = 0.00078, P = 0.00078
Identities = 27/99 (27%), Positives = 52/99 (52%)
Query: 69 SNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDC-RICGDPNSVLRFAFV 123
S ++ E R++YV ++D T ++L F CG++ + C + G P +A++
Sbjct: 149 SPLEKAEADHRSIYVGNVDYGGTAQELEAYFNHCGEIHRVTILCDKFSGHPKG---YAYI 205
Query: 124 EFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPT 162
EF E A+AA+ L ++ ++VLP +T + ++ T
Sbjct: 206 EFATESSAQAAVELDKSIFRGRVIKVLPKRTNLPGISST 244
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 112 (44.5 bits), Expect = 0.00078, P = 0.00078
Identities = 55/210 (26%), Positives = 96/210 (45%)
Query: 55 NGYSQGKRRMNCRT---SNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRIC 111
NG S R NC + + A D+ + + V+ + Q +T+E+ +LF + G++ C++
Sbjct: 27 NGPSSNNR--NCPSPMQTGATTDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLV 83
Query: 112 GDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFL-PRSE 168
D L + FV + D + A A++ T+ G +R L +KT + ++ P S
Sbjct: 84 RDKITGQSLGYGFVNYIDPKDAEKAIN---TLNG---LR-LQTKT----IKVSYARPSSA 132
Query: 169 DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH--STRIAFVEFAM- 225
R+ +Y + + K +TQ +++ F S G + R+L D S + F+ F
Sbjct: 133 SIRDA---NLYVSGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGVSRGVGFIRFDKR 188
Query: 226 --AESAIAALNCSGAVLGSLPIRVSPSKTP 253
AE AI LN + PI V + P
Sbjct: 189 IEAEEAIKGLNGQKPSGATEPITVKFANNP 218
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 112 (44.5 bits), Expect = 0.00078, P = 0.00078
Identities = 50/194 (25%), Positives = 86/194 (44%)
Query: 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 132
+DE+ +T+YV ++ + VTE + LF G +C++ D + FVEF + A
Sbjct: 2 EDEM-PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA 60
Query: 133 AALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS-EDEREMCSRTIYCTNIDKKVTQG 190
AAL+ + G + V+V + T + T +R ++ ++ ++T
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 191 DIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAM---AESAIAALNCSGAVLGSLPI 245
DIK F G + R++ D S FV F AE+AI + G LG I
Sbjct: 121 DIKAAFAPF-GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG--GQWLGGRQI 177
Query: 246 RVS-PSKTPVRPRA 258
R + ++ P P++
Sbjct: 178 RTNWATRKPPAPKS 191
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 115 (45.5 bits), Expect = 0.00078, P = 0.00078
Identities = 50/188 (26%), Positives = 77/188 (40%)
Query: 70 NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEFTD 127
NA ++YV D+ VTE L F G V+ R+C D L +A+V F
Sbjct: 2 NAAASSYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 128 EEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKV 187
A AL TM F V+ K P+ + R R+ ++ N+DK +
Sbjct: 62 PADAERALD---TM-NF---DVIKGK----PIRIMWSQRDPSLRKSGVGNVFIKNLDKSI 110
Query: 188 TQGDIKLFFE--SVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLP 244
D K ++ S G + +++ D S AFV F E+A A+ +G +L
Sbjct: 111 ---DNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRK 167
Query: 245 IRVSPSKT 252
+ V K+
Sbjct: 168 VFVGRFKS 175
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 112 (44.5 bits), Expect = 0.00079, P = 0.00078
Identities = 50/194 (25%), Positives = 86/194 (44%)
Query: 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 132
+DE+ +T+YV ++ + VTE + LF G +C++ D + FVEF + A
Sbjct: 2 EDEM-PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA 60
Query: 133 AALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS-EDEREMCSRTIYCTNIDKKVTQG 190
AAL+ + G + V+V + T + T +R ++ ++ ++T
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 191 DIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAM---AESAIAALNCSGAVLGSLPI 245
DIK F G + R++ D S FV F AE+AI + G LG I
Sbjct: 121 DIKAAFAPF-GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG--GQWLGGRQI 177
Query: 246 RVS-PSKTPVRPRA 258
R + ++ P P++
Sbjct: 178 RTNWATRKPPAPKS 191
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 112 (44.5 bits), Expect = 0.00079, P = 0.00078
Identities = 50/194 (25%), Positives = 86/194 (44%)
Query: 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 132
+DE+ +T+YV ++ + VTE + LF G +C++ D + FVEF + A
Sbjct: 2 EDEM-PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAA 60
Query: 133 AALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS-EDEREMCSRTIYCTNIDKKVTQG 190
AAL+ + G + V+V + T + T +R ++ ++ ++T
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 191 DIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAM---AESAIAALNCSGAVLGSLPI 245
DIK F G + R++ D S FV F AE+AI + G LG I
Sbjct: 121 DIKAAFAPF-GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG--GQWLGGRQI 177
Query: 246 RVS-PSKTPVRPRA 258
R + ++ P P++
Sbjct: 178 RTNWATRKPPAPKS 191
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 112 (44.5 bits), Expect = 0.00079, P = 0.00079
Identities = 51/198 (25%), Positives = 92/198 (46%)
Query: 65 NCRTS-NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFA 121
NC + ++ E + + V+ + Q +T+E+L +LF + G++ C++ D L +
Sbjct: 52 NCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYG 111
Query: 122 FVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFL-PRSEDEREMCSRTIYC 180
FV + D + A A++ T+ G +R L +KT + ++ P S R+ +Y
Sbjct: 112 FVNYIDPKDAEKAIN---TLNG---LR-LQTKT----IKVSYARPSSASIRDA---NLYV 157
Query: 181 TNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH--STRIAFVEFAM---AESAIAALNC 235
+ + K +TQ +++ F S G + R+L D S + F+ F AE AI LN
Sbjct: 158 SGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 216
Query: 236 SGAVLGSLPIRVSPSKTP 253
+ PI V + P
Sbjct: 217 QKPPGATEPITVKFANNP 234
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 112 (44.5 bits), Expect = 0.00079, P = 0.00079
Identities = 51/198 (25%), Positives = 92/198 (46%)
Query: 65 NCRTS-NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFA 121
NC + ++ E + + V+ + Q +T+E+L +LF + G++ C++ D L +
Sbjct: 53 NCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYG 112
Query: 122 FVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFL-PRSEDEREMCSRTIYC 180
FV + D + A A++ T+ G +R L +KT + ++ P S R+ +Y
Sbjct: 113 FVNYIDPKDAEKAIN---TLNG---LR-LQTKT----IKVSYARPSSASIRDA---NLYV 158
Query: 181 TNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH--STRIAFVEFAM---AESAIAALNC 235
+ + K +TQ +++ F S G + R+L D S + F+ F AE AI LN
Sbjct: 159 SGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 217
Query: 236 SGAVLGSLPIRVSPSKTP 253
+ PI V + P
Sbjct: 218 QKPPGATEPITVKFANNP 235
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 112 (44.5 bits), Expect = 0.00079, P = 0.00079
Identities = 51/198 (25%), Positives = 92/198 (46%)
Query: 65 NCRTS-NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFA 121
NC + ++ E + + V+ + Q +T+E+L +LF + G++ C++ D L +
Sbjct: 53 NCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYG 112
Query: 122 FVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFL-PRSEDEREMCSRTIYC 180
FV + D + A A++ T+ G +R L +KT + ++ P S R+ +Y
Sbjct: 113 FVNYIDPKDAEKAIN---TLNG---LR-LQTKT----IKVSYARPSSASIRDA---NLYV 158
Query: 181 TNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH--STRIAFVEFAM---AESAIAALNC 235
+ + K +TQ +++ F S G + R+L D S + F+ F AE AI LN
Sbjct: 159 SGLPKTMTQKELEQLF-SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 217
Query: 236 SGAVLGSLPIRVSPSKTP 253
+ PI V + P
Sbjct: 218 QKPPGATEPITVKFANNP 235
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 112 (44.5 bits), Expect = 0.00081, P = 0.00081
Identities = 50/194 (25%), Positives = 86/194 (44%)
Query: 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 132
+DE+ +T+YV ++ + VTE + LF G +C++ D + FVEF + A
Sbjct: 2 EDEM-PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAA 60
Query: 133 AALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS-EDEREMCSRTIYCTNIDKKVTQG 190
AAL+ + G + V+V + T + T +R ++ ++ ++T
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 191 DIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAM---AESAIAALNCSGAVLGSLPI 245
DIK F G + R++ D S FV F AE+AI + G LG I
Sbjct: 121 DIKAAFAPF-GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG--GQWLGGRQI 177
Query: 246 RVS-PSKTPVRPRA 258
R + ++ P P++
Sbjct: 178 RTNWATRKPPAPKS 191
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 112 (44.5 bits), Expect = 0.00086, P = 0.00086
Identities = 56/206 (27%), Positives = 91/206 (44%)
Query: 48 NTAFQKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVD 107
NT + R +S+ R N DE RT+YV ++D VTE+ +ATLF G V
Sbjct: 19 NTGYNARM-HSKLAEREGFHLGNGS-DEP--RTLYVGNLDSTVTEDFIATLFNQIGSVTK 74
Query: 108 CRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS 167
++ D ++ +AFVEF+D A AL TM R+L + VN P
Sbjct: 75 TKVIFDGSND-PYAFVEFSDHGQASQALQ---TM----NKRLLLDREM--KVNWAVEPGQ 124
Query: 168 EDEREMCSRT--IYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEF 223
+ + +R ++ ++ +V ++ F+ G+V +++ D S FV +
Sbjct: 125 QQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPF-GDVSDAKVIRDTNTTKSKGYGFVSY 183
Query: 224 AMAESAIAALN-CSGAVLGSLPIRVS 248
E A A+ +G LG IR +
Sbjct: 184 PKREEAERAIEQMNGQWLGRRTIRTN 209
>TAIR|locus:2171780 [details] [associations]
symbol:AT5G65260 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB013395 eggNOG:NOG238057
HOGENOM:HOG000208465 HSSP:P33240 OMA:GRANYYA EMBL:AF386984
EMBL:BT000018 IPI:IPI00548869 RefSeq:NP_201329.1 UniGene:At.24028
UniGene:At.9297 ProteinModelPortal:Q9FJN9 SMR:Q9FJN9 IntAct:Q9FJN9
STRING:Q9FJN9 PaxDb:Q9FJN9 PRIDE:Q9FJN9 EnsemblPlants:AT5G65260.1
GeneID:836651 KEGG:ath:AT5G65260 TAIR:At5g65260 InParanoid:Q9FJN9
PhylomeDB:Q9FJN9 ProtClustDB:CLSN2715990 ArrayExpress:Q9FJN9
Genevestigator:Q9FJN9 Uniprot:Q9FJN9
Length = 220
Score = 107 (42.7 bits), Expect = 0.00089, P = 0.00089
Identities = 29/89 (32%), Positives = 47/89 (52%)
Query: 69 SNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTD 127
+ A ++EV R+V+V ++D T E++ F TCG V I D + FA+VEF +
Sbjct: 82 NQAGKEEVDARSVFVGNVDYACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVE 141
Query: 128 EEGARAALSLAGTMLGFYPVRVLPSKTAI 156
E + AL L + L ++VL +T +
Sbjct: 142 VEAVQEALQLNESELHGRQLKVLQKRTNV 170
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 111 (44.1 bits), Expect = 0.00095, P = 0.00095
Identities = 47/162 (29%), Positives = 73/162 (45%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSL 137
++YV D+ VTE+ L F T G V+ RIC D L +A+V F A+ AL
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD- 69
Query: 138 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFE 197
TM F ++ K+ + + R R ++ N+DK + D K +E
Sbjct: 70 --TM-NF---DIIKGKS----IRLMWSQRDAYLRRSGIGNVFIKNLDKSI---DNKTLYE 116
Query: 198 --SVCGEVQRLRLLGDYQHSTRIAFVEF---AMAESAIAALN 234
S G++ +++ D Q S AFV F + A+ AI +N
Sbjct: 117 HFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMN 158
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 111 (44.1 bits), Expect = 0.00095, P = 0.00095
Identities = 51/192 (26%), Positives = 85/192 (44%)
Query: 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGAR 132
+DE+ +T+YV ++ + VTE + LF G +C++ D + FVEF + A
Sbjct: 2 EDEM-PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAA 60
Query: 133 AALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDI 192
+AL+ M G R + K VN P S+ + ++ ++ ++T DI
Sbjct: 61 SALA---AMNG----RKIMGKEV--KVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDI 111
Query: 193 KLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAM---AESAIAALNCSGAVLGSLPIRV 247
K F G + R++ D S FV F AE+AI + G LG IR
Sbjct: 112 KAAFAPF-GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG--GQWLGGRQIRT 168
Query: 248 S-PSKTPVRPRA 258
+ ++ P P++
Sbjct: 169 NWATRKPPAPKS 180
>UNIPROTKB|Q9Y4C8 [details] [associations]
symbol:RBM19 "Probable RNA-binding protein 19" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS;IDA] [GO:0005737 "cytoplasm"
evidence=ISS;IDA] [GO:0040019 "positive regulation of embryonic
development" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0005694
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0040019 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV EMBL:AB014582 EMBL:AL117547
EMBL:AC009731 EMBL:AC073863 EMBL:AC090669 EMBL:BC004289
EMBL:BC006137 IPI:IPI00000686 PIR:T17297 RefSeq:NP_001140170.1
RefSeq:NP_001140171.1 RefSeq:NP_057280.2 UniGene:Hs.7482 PDB:2DGW
PDBsum:2DGW ProteinModelPortal:Q9Y4C8 SMR:Q9Y4C8 MINT:MINT-1196129
STRING:Q9Y4C8 PhosphoSite:Q9Y4C8 DMDM:308153566 SWISS-2DPAGE:Q9Y4C8
PaxDb:Q9Y4C8 PRIDE:Q9Y4C8 DNASU:9904 Ensembl:ENST00000261741
Ensembl:ENST00000392561 Ensembl:ENST00000545145 GeneID:9904
KEGG:hsa:9904 UCSC:uc001tvm.3 CTD:9904 GeneCards:GC12M114259
HGNC:HGNC:29098 HPA:HPA038860 neXtProt:NX_Q9Y4C8
PharmGKB:PA134886784 HOVERGEN:HBG055637 InParanoid:Q9Y4C8
OrthoDB:EOG4D7Z56 PhylomeDB:Q9Y4C8 ChiTaRS:RBM19
EvolutionaryTrace:Q9Y4C8 GenomeRNAi:9904 NextBio:37345 Bgee:Q9Y4C8
CleanEx:HS_RBM19 Genevestigator:Q9Y4C8 GermOnline:ENSG00000122965
Uniprot:Q9Y4C8
Length = 960
Score = 116 (45.9 bits), Expect = 0.00096, P = 0.00096
Identities = 45/165 (27%), Positives = 73/165 (44%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSV-----LRFAFVEFTDEEGARAA 134
T+++ +++ TEE+L +F G V C I N + F FVE+ E A+ A
Sbjct: 731 TLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKA 790
Query: 135 LS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIK 193
L L G ++ + + V S+ A P T + + R+ + I NI + +I+
Sbjct: 791 LKQLQGHVVDGHKLEVRISERATKPA-VTLARKKQVPRKQTTSKILVRNIPFQAHSREIR 849
Query: 194 LFFESVCGEVQRLRL----LGDYQHSTRIAFVEFAMAESAIAALN 234
F S GE++ +RL G H FV+F + A A N
Sbjct: 850 ELF-STFGELKTVRLPKKMTGTGTHRG-FGFVDFLTKQDAKRAFN 892
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 110 (43.8 bits), Expect = 0.00098, P = 0.00098
Identities = 55/207 (26%), Positives = 95/207 (45%)
Query: 55 NGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP 114
NGY +CR D++ R + V+ + Q +T+++L +LF + G+V ++ D
Sbjct: 3 NGYEDHMAE-DCR------DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDK 55
Query: 115 --NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFL-PRSEDER 171
L + FV + + A A++ T+ G +R L SKT + ++ P SE +
Sbjct: 56 VAGHSLGYGFVNYVTAKDAERAIN---TLNG---LR-LQSKT----IKVSYARPSSEVIK 104
Query: 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQH--STRIAFVEF---AMA 226
+ +Y + + + +TQ D++ F S G + R+L D S +AF+ F + A
Sbjct: 105 DA---NLYISGLPRSMTQKDVEDMF-SRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEA 160
Query: 227 ESAIAALNCSGAVLGSLPIRVSPSKTP 253
E AI N S PI V + P
Sbjct: 161 EEAITNFNGHKPPGSSEPITVKFAANP 187
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.326 0.139 0.425 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 264 264 0.00092 114 3 11 22 0.39 33
32 0.50 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 195
No. of states in DFA: 598 (64 KB)
Total size of DFA: 190 KB (2108 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 22.87u 0.14s 23.01t Elapsed: 00:00:01
Total cpu time: 22.90u 0.15s 23.05t Elapsed: 00:00:01
Start: Mon May 20 17:45:19 2013 End: Mon May 20 17:45:20 2013
WARNINGS ISSUED: 1