BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024696
(264 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8WXA9|SREK1_HUMAN Splicing regulatory glutamine/lysine-rich protein 1 OS=Homo sapiens
GN=SREK1 PE=1 SV=1
Length = 508
Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 77 IRRTVYVSDIDQQVT-EEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAAL 135
IRRTVYV +++ Q T +QL F G+V R+ GD RFAFVEF D+ AL
Sbjct: 64 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRAL 123
Query: 136 SLAGTMLGFYPVRVLPSKTAI 156
+ G M G P+++ S AI
Sbjct: 124 AFNGVMFGDRPLKINHSNNAI 144
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%)
Query: 176 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNC 235
RT+Y N++ + T D L F GEV+ +R+ GD TR AFVEFA S AL
Sbjct: 66 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 125
Query: 236 SGAVLGSLPIRVSPSKTPV 254
+G + G P++++ S +
Sbjct: 126 NGVMFGDRPLKINHSNNAI 144
>sp|Q8BZX4|SREK1_MOUSE Splicing regulatory glutamine/lysine-rich protein 1 OS=Mus musculus
GN=Srek1 PE=2 SV=1
Length = 494
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 77 IRRTVYVSDIDQQVT-EEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAAL 135
IRRTVYV +++ Q T +QL F G+V R+ GD RFAFVEF D+ AL
Sbjct: 67 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRAL 126
Query: 136 SLAGTMLGFYPVRVLPSKTAI 156
+ G M G P+++ S AI
Sbjct: 127 AFNGVMFGDRPLKINHSNNAI 147
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%)
Query: 176 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNC 235
RT+Y N++ + T D L F GEV+ +R+ GD TR AFVEFA S AL
Sbjct: 69 RTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAF 128
Query: 236 SGAVLGSLPIRVSPS 250
+G + G P++++ S
Sbjct: 129 NGVMFGDRPLKINHS 143
>sp|Q9JKL7|SREK1_RAT Splicing regulatory glutamine/lysine-rich protein 1 OS=Rattus
norvegicus GN=Srek1 PE=1 SV=1
Length = 494
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 77 IRRTVYVSDIDQQVT-EEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAAL 135
IRRTVYV +++ Q T +QL F G+V R+ GD RFAFVEF D+ AL
Sbjct: 67 IRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRAL 126
Query: 136 SLAGTMLGFYPVRVLPSKTAI 156
+ G M G P+++ S AI
Sbjct: 127 AFNGVMFGDRPLKINHSNNAI 147
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 133 AALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDI 192
AAL T LG P L + V+P+ + + RT+Y N++ + T D
Sbjct: 38 AALDPNITALGEIPQPPL-----MGNVDPSKI-------DEIRRTVYVGNLNSQTTTADQ 85
Query: 193 KLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPS 250
L F GEV+ +R+ GD TR AFVEFA S AL +G + G P++++ S
Sbjct: 86 LLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPRALAFNGVMFGDRPLKINHS 143
>sp|Q9USY2|YOW4_SCHPO Uncharacterized RNA-binding protein C1861.04c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC1861.04c PE=4 SV=1
Length = 1014
Score = 60.5 bits (145), Expect = 1e-08, Method: Composition-based stats.
Identities = 53/173 (30%), Positives = 80/173 (46%), Gaps = 11/173 (6%)
Query: 81 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICG-DPNSVLRFAFVEFTDEEGARAALSLAG 139
+YV++ E + LF G VVD R N+ RF +V+ + A AL L
Sbjct: 668 LYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQMRKPDEAHNALQLHK 727
Query: 140 TMLG-FYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFES 198
+L YP++V S P+ T PRS E R +Y TNID KV + D++ FF
Sbjct: 728 KLLEEKYPIQVFISD----PLRRT--PRSGAVYE--GRELYVTNIDFKVNEKDVETFFRD 779
Query: 199 VCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSK 251
G+V+ +R+ + +V + A AL+ +G LG+ + V SK
Sbjct: 780 Y-GQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSAAGKQLGNRVLNVVLSK 831
Score = 52.4 bits (124), Expect = 3e-06, Method: Composition-based stats.
Identities = 52/184 (28%), Positives = 86/184 (46%), Gaps = 26/184 (14%)
Query: 79 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLA 138
R +YV++ID +V E+ + T F GQV RI N F +V T + A ALS A
Sbjct: 757 RELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSAA 816
Query: 139 GTMLGFYPVRVLPS-------KTAIAPVNPTFLPRSEDERE-------------MCSRTI 178
G LG + V+ S KT ++ + L +S + E + S+++
Sbjct: 817 GKQLGNRVLNVVLSKPRESLEKTRVSSNDNRTLAKSFETTESNKMSTPKKSFEQIKSKSL 876
Query: 179 YCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFA-MAESAIAALNCSG 237
TN+D V + ++ FES G++ R+ L +++ A VEF + ++ A+L G
Sbjct: 877 GVTNVDGTVNEARLRSLFESY-GKLYRVVLHPEHEG----AVVEFLDIHDAGKASLALEG 931
Query: 238 AVLG 241
+G
Sbjct: 932 HEIG 935
Score = 42.0 bits (97), Expect = 0.004, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 168 EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAE 227
E R T+ TN+ +++ ++K+FF+ CG + R+ +L D Q ++A +EF+
Sbjct: 582 EQHRNREELTVLVTNLPSDISENELKIFFKD-CGNIIRIFILEDNQKDVKVAQIEFSETS 640
Query: 228 SAIAA 232
+AA
Sbjct: 641 EVLAA 645
Score = 32.0 bits (71), Expect = 4.3, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAA 134
TV V+++ ++E +L F CG ++ I D ++ A +EF++ AA
Sbjct: 591 TVLVTNLPSDISENELKIFFKDCGNIIRIFILEDNQKDVKVAQIEFSETSEVLAA 645
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 99/208 (47%), Gaps = 27/208 (12%)
Query: 63 RMNCRTSNA--QQDEVIRRTVYVSDIDQQVTEEQLATLFLTC------GQVVDCRICGDP 114
RMN + A ++D+ T++V D+ VT+ L F + +VV RI G
Sbjct: 158 RMNWASLGAGERRDDSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRS 217
Query: 115 NSVLRFAFVEFTDE-EGARAALSLAGTMLGFYPVRVLPS---KTAIAPVNPTFL-PR-SE 168
+ FV+F DE E RA + G + P+R+ P+ K P T+ P+ ++
Sbjct: 218 KG---YGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQ 274
Query: 169 DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEF---AM 225
E + + TI+ +D V + ++ F S GE+ ++++ R FV+F A
Sbjct: 275 GESDPNNTTIFVGGLDPTVAEEHLRQVF-SPYGELVHVKIVA----GKRCGFVQFGTRAS 329
Query: 226 AESAIAALNCSGAVLGSLPIRVSPSKTP 253
AE A+++LN G LG IR+S ++P
Sbjct: 330 AEQALSSLN--GTQLGGQSIRLSWGRSP 355
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 80/183 (43%), Gaps = 14/183 (7%)
Query: 79 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR--FAFVEFTDEEGARAALS 136
R++++ D+ + E L+T F G++V ++ + + + F+EF A
Sbjct: 84 RSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAAE---- 139
Query: 137 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 196
T+L Y ++P+ +N L E + TI+ ++ VT ++ F
Sbjct: 140 ---TILQTYNGTLMPNVEQNFRMNWASLGAGERRDDSAEHTIFVGDLAADVTDYILQETF 196
Query: 197 ESVCGEVQRLRLLGD--YQHSTRIAFVEFAMAESAIAALNCSGAVL-GSLPIRVSP--SK 251
+SV V+ +++ D S FV+FA + A+ VL + P+R+ P +K
Sbjct: 197 KSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPAANK 256
Query: 252 TPV 254
PV
Sbjct: 257 KPV 259
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 84/188 (44%), Gaps = 20/188 (10%)
Query: 68 TSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEF 125
T+ Q E + ++YV D+D V+E L +F G V R+C D + L +A+V F
Sbjct: 24 TNEENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNF 83
Query: 126 TDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDK 185
D + A+ A+ L F P++ + + +P+ R+ + I+ N+
Sbjct: 84 NDHDAAKTAIE----KLNFTPIKGKLCRIMWSQRDPSL-------RKKGAGNIFIKNLHP 132
Query: 186 KVTQGDIKLFFE--SVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAALNC-SGAVLG 241
+ D K ++ SV G + ++ D ++ +V F ESA A++ +G +L
Sbjct: 133 DI---DNKALYDTFSVFGNILSSKVATDETGKSKGFGYVHFEEDESASEAIDALNGMLLN 189
Query: 242 SLPIRVSP 249
I V P
Sbjct: 190 GQEIYVGP 197
>sp|Q7XTT4|NUCL2_ORYSJ Nucleolin 2 OS=Oryza sativa subsp. japonica GN=Os04g0620700 PE=2
SV=2
Length = 707
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 78/176 (44%), Gaps = 18/176 (10%)
Query: 79 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAALSL 137
+T++V ++ V +EQ+ F G+VVD R + R F VEF E A+ AL L
Sbjct: 449 KTLFVGNLPYNVEQEQVKQFFQEAGEVVDIRFSTFEDGNFRGFGHVEFATAEAAKKALEL 508
Query: 138 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDER-------EMCSRTIYCTNIDKKVTQG 190
AG L PVR+ +A + P S + + TI+ D +
Sbjct: 509 AGHDLMGRPVRLD-----LARERGAYTPGSGRDNSSFKKPAQSSGNTIFIKGFDTSLDIH 563
Query: 191 DIKLFFE---SVCGEVQRLRLLGDYQ--HSTRIAFVEFAMAESAIAALNCSGAVLG 241
I+ E CGE+ R+ + DY+ S +A+++FA S A +G+ LG
Sbjct: 564 QIRNSLEEHFGSCGEITRVSIPKDYETGASKGMAYMDFADNGSLSKAYELNGSDLG 619
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 165 PRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLL----GDYQHSTRIAF 220
P S + S+T++ N+ V Q +K FF+ GEV +R G+++
Sbjct: 438 PASNQNQATGSKTLFVGNLPYNVEQEQVKQFFQE-AGEVVDIRFSTFEDGNFRG---FGH 493
Query: 221 VEFAMAESAIAALNCSGAVLGSLPIRV 247
VEFA AE+A AL +G L P+R+
Sbjct: 494 VEFATAEAAKKALELAGHDLMGRPVRL 520
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 91/209 (43%), Gaps = 24/209 (11%)
Query: 49 TAFQKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDC 108
TA Q N Q ++ S +Q E ++YV D++ V+E L +F G V
Sbjct: 8 TAEQLENLNIQDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSI 67
Query: 109 RICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPR 166
R+C D + L +A+V F D E R A+ L + P++ + + +P+
Sbjct: 68 RVCRDAITKTSLGYAYVNFNDHEAGRKAIE----QLNYTPIKGRLCRIMWSQRDPSL--- 120
Query: 167 SEDEREMCSRTIYCTNIDKKVTQGDIKLFFE--SVCGEVQRLRLLGDYQHSTR----IAF 220
R+ S I+ N+ + D K ++ SV G++ ++ D ++ + F
Sbjct: 121 ----RKKGSGNIFIKNLHPDI---DNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHF 173
Query: 221 VEFAMAESAIAALNCSGAVLGSLPIRVSP 249
E A+ AI ALN G +L I V+P
Sbjct: 174 EEEGAAKEAIDALN--GMLLNGQEIYVAP 200
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 67 RTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEF 125
R S ++ + +YV +I+ + T+EQ LF G +V + D + L+ F FV +
Sbjct: 207 RDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNY 266
Query: 126 TDEEGARAAL 135
E A A+
Sbjct: 267 EKHEDAVKAV 276
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 16/177 (9%)
Query: 66 CRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRF 120
CR +Q+D +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 120 CRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 179
Query: 121 AFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSR--TI 178
FV + E A A+ ML L K + + R EM + +
Sbjct: 180 GFVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNV 232
Query: 179 YCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAALN 234
Y NID+ VT+ + + FE GE+ L D + +R FV F+ ESA AA++
Sbjct: 233 YIKNIDQDVTEEEFRELFEKF-GEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVD 288
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 17/165 (10%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTD-EEGARAALS 136
++YV ++D VTE L LF + GQV R+C D L +A+V + + +G RA
Sbjct: 50 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 109
Query: 137 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 196
L T++ P R++ S+ +P R+ ++ N+D + + F
Sbjct: 110 LNYTLIKGKPCRIMWSQR-----DPAL-------RKTGQGNVFIKNLDSAIDNKALHDTF 157
Query: 197 ESVCGEVQRLRLLGD-YQHSTRIAFVEFAMAESAIAALNCSGAVL 240
+ G + ++ D + +S FV + AE+A A+ +L
Sbjct: 158 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGML 201
>sp|Q1PEP5|NUCL2_ARATH Nucleolin 2 OS=Arabidopsis thaliana GN=NUCL2 PE=2 SV=1
Length = 636
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 76/183 (41%), Gaps = 11/183 (6%)
Query: 79 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICG-DPNSVLRFAFVEFTDEEGARAALSL 137
+T++ ++ Q+ + F G+VVD R+ D S + +EF E A+ AL +
Sbjct: 384 KTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKALEM 443
Query: 138 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFE 197
G +L VR+ + P N + E + SRTIY + + +IK
Sbjct: 444 NGKLLLGRDVRLDLANERGTPRNSNPGRKGEGSQ---SRTIYVRGFSSSLGEDEIKKELR 500
Query: 198 S---VCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKTPV 254
S CGEV R+ + D + F + AL SG+ +G I V S
Sbjct: 501 SHFSKCGEVTRVHVPTDRETGASRGFAYIDLTSGFDEALQLSGSEIGGGNIHVEES---- 556
Query: 255 RPR 257
RPR
Sbjct: 557 RPR 559
Score = 35.0 bits (79), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 154 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLG-DY 212
A P PT ++ + S+T++ N+ ++ + DI+ FF+ GEV +RL D
Sbjct: 368 NAKQPKTPT------NQTQGGSKTLFAGNLSYQIARSDIENFFKE-AGEVVDVRLSSFDD 420
Query: 213 QHSTRIAFVEFAMAESAIAALNCSGAVL 240
+EFA E A AL +G +L
Sbjct: 421 GSFKGYGHIEFASPEEAQKALEMNGKLL 448
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 85/195 (43%), Gaps = 24/195 (12%)
Query: 73 QDEVIRRTVYVSDIDQQVTEEQLATLF------LTCGQVVDCRICGDPNSVLRFAFVEFT 126
Q E TV+V D+ VT+ L F + +VV+ R G + FV F
Sbjct: 167 QAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKG---YGFVRFA 223
Query: 127 DE-EGARAALSLAGTMLGFYPVRVLPSKT----AIAPVNPTFLPRSEDEREMCSRTIYCT 181
DE E RA + G P+R P+ + P + + E + + TI+
Sbjct: 224 DESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVG 283
Query: 182 NIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAM---AESAIAALNCSGA 238
+D+ VT+ D+K F GE+ +++ R FV++A AE A++ LN G
Sbjct: 284 AVDQSVTEDDLKSVFGQF-GELVHVKIPA----GKRCGFVQYANRACAEQALSVLN--GT 336
Query: 239 VLGSLPIRVSPSKTP 253
LG IR+S ++P
Sbjct: 337 QLGGQSIRLSWGRSP 351
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 69 SNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDE 128
N+ + + T++V +DQ VTE+ L ++F G++V +I + R FV++ +
Sbjct: 268 GNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIP----AGKRCGFVQYANR 323
Query: 129 EGARAALS-LAGTMLGFYPVRV 149
A ALS L GT LG +R+
Sbjct: 324 ACAEQALSVLNGTQLGGQSIRL 345
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 16/177 (9%)
Query: 66 CRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRF 120
CR +Q+D +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 123 CRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 182
Query: 121 AFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSR--TI 178
FV + E A A+ ML L K + + R EM + +
Sbjct: 183 GFVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNV 235
Query: 179 YCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAALN 234
Y NID++VT + + FE GE+ L D + +R FV F+ +SA AA++
Sbjct: 236 YIKNIDQEVTDEEFRKMFEKF-GEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVD 291
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 17/165 (10%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTD-EEGARAALS 136
++YV ++D VTE L LF + GQV R+C D L +A+V + + +G RA
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 137 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 196
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 113 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDAAIDNKALHDTF 160
Query: 197 ESVCGEVQRLRLLGD-YQHSTRIAFVEFAMAESAIAALNCSGAVL 240
+ G + ++ D + +S FV + AE+A A+ +L
Sbjct: 161 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGML 204
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 16/177 (9%)
Query: 66 CRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRF 120
CR +Q+D +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 123 CRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 182
Query: 121 AFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSR--TI 178
FV + E A A+ ML L K + + R EM + +
Sbjct: 183 GFVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNV 235
Query: 179 YCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAALN 234
Y NID++VT + + FE GE+ L D + +R FV F+ +SA AA++
Sbjct: 236 YIKNIDQEVTDEEFRKMFEKF-GEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVD 291
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 17/165 (10%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTD-EEGARAALS 136
++YV ++D VTE L LF + GQV R+C D L +A+V + + +G RA
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 137 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 196
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 113 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDAAIDNKALHDTF 160
Query: 197 ESVCGEVQRLRLLGD-YQHSTRIAFVEFAMAESAIAALNCSGAVL 240
+ G + ++ D + +S FV + AE+A A+ +L
Sbjct: 161 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGML 204
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 87/193 (45%), Gaps = 15/193 (7%)
Query: 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTC-GQVVDCRICGDPNS--VLRFAFVEFTDE- 128
Q E T++V D+ +VT+ L+ F G V ++ D + + FV F DE
Sbjct: 148 QTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADEN 207
Query: 129 EGARAALSLAGTMLGFYPVRVLPSKTAIA-PVNPTFLPRSE----DEREMCSRTIYCTNI 183
E RA + G P+R+ P+ A P+ P ++ + + + TI+ +
Sbjct: 208 EQMRAMTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGL 267
Query: 184 DKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNC-SGAVLGS 242
D VT ++K F GE+ +++ R FV++A SA AL+ +G LG
Sbjct: 268 DANVTDDELKSIF-GQFGELLHVKIP----PGKRCGFVQYANKASAEHALSVLNGTQLGG 322
Query: 243 LPIRVSPSKTPVR 255
IR+S ++P +
Sbjct: 323 QSIRLSWGRSPNK 335
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 5/87 (5%)
Query: 64 MNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFV 123
N + +NA ++ T++V +D VT+++L ++F G+++ +I P R FV
Sbjct: 245 QNTQGANAGDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKIP--PGK--RCGFV 300
Query: 124 EFTDEEGARAALS-LAGTMLGFYPVRV 149
++ ++ A ALS L GT LG +R+
Sbjct: 301 QYANKASAEHALSVLNGTQLGGQSIRL 327
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 79/178 (44%), Gaps = 25/178 (14%)
Query: 71 AQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEF 125
+Q+D +RR+ V++ ++D+ + + + F G ++ C++ D + + FV F
Sbjct: 78 SQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHF 137
Query: 126 TDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSR-----TIYC 180
EE A ++ ML +V K F+PR E E+E+ + +Y
Sbjct: 138 ETEEAANTSIDKVNGML-LNGKKVYVGK---------FIPRKEREKELGEKAKLFTNVYV 187
Query: 181 TNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR----IAFVEFAMAESAIAALN 234
N + +K FFE G++ +++ ++ +AF AE+A+ ALN
Sbjct: 188 KNFTEDFDDEKLKEFFEPY-GKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALN 244
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 15/164 (9%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEFTDEEGARAALSL 137
++YV D+ Q V E L F + G V+ R+C D L +A+V F A AL
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD- 61
Query: 138 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFE 197
+ F VR P + + +P+ R ++ N+D+ + I F
Sbjct: 62 ---TMNFDLVRNKPIRIMWSQRDPSL-------RRSGVGNVFIKNLDRAIDNKAIYDTF- 110
Query: 198 SVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAALNCSGAVL 240
S G + ++ D + +++ FV F E+A +++ +L
Sbjct: 111 SAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGML 154
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 79/180 (43%), Gaps = 19/180 (10%)
Query: 66 CRTSNAQQDEVIRR----TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-F 120
CR +Q+D +R+ +Y+ ++ + + L F T G ++ C++ D N V R F
Sbjct: 109 CRIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGF 168
Query: 121 AFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSR--TI 178
FV F +E AR A+ ML + + ++ + R E+ ++ +
Sbjct: 169 GFVHFENESDARDAIEAVDGML-------MNDQEVYVALHVSKKDRQSKLEEVKAKFTNV 221
Query: 179 YCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR----IAFVEFAMAESAIAALN 234
Y NID++ +Q + + F G++ L D + R + F + A A A+ LN
Sbjct: 222 YVKNIDQETSQEEFEELF-GKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELN 280
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 17/165 (10%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEE-GARAALS 136
++YV +++ V+E L +F G V R+C D N+ L +A+V F D E G +A
Sbjct: 39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQ 98
Query: 137 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 196
L T++ P R++ S+ +P+ R+ S IY N+ + + F
Sbjct: 99 LNYTLIKGKPCRIMWSQR-----DPSL-------RKKGSGNIYIKNLHPAIDNKSLHETF 146
Query: 197 ESVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAALNCSGAVL 240
S G + ++ D +R FV F A A+ +L
Sbjct: 147 -STFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGML 190
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 77/177 (43%), Gaps = 16/177 (9%)
Query: 66 CRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRF 120
CR +Q+D +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 122 CRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 181
Query: 121 AFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSE--DEREMCSRTI 178
FV + E A A+ ML L K + + R DE + I
Sbjct: 182 GFVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFDEMKANFTNI 234
Query: 179 YCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAALN 234
Y NID VT+ + + FE GE+ L D + +R FV ++ ESA AA++
Sbjct: 235 YIKNIDPDVTEEEFRKIFEQF-GEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVD 290
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 17/177 (9%)
Query: 68 TSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEF 125
TS ++ ++YV ++D VTE L LF + GQV R+C D L +A+V +
Sbjct: 40 TSPNNNNQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNY 99
Query: 126 TD-EEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNID 184
+ +G RA L T++ P R++ S+ +P R+ ++ N+D
Sbjct: 100 NNTADGERALEDLNYTLIKGKPCRIMWSQR-----DPAL-------RKTGQGNVFIKNLD 147
Query: 185 KKVTQGDIKLFFESVCGEVQRLRLLGD-YQHSTRIAFVEFAMAESAIAALNCSGAVL 240
+ + F + G + ++ D + +S FV + AE+A A+ +L
Sbjct: 148 SAIDNKALHDTF-AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGML 203
>sp|Q6Z1C0|NUCL1_ORYSJ Nucleolin 1 OS=Oryza sativa subsp. japonica GN=Os08g0192900 PE=2
SV=1
Length = 572
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 83/185 (44%), Gaps = 18/185 (9%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAALSLA 138
T+++ ++ + ++Q+ F G+V+ R+ + R F V+F E A+ AL L
Sbjct: 312 TLFMGNLSFNLNQDQVKEFFQEVGEVISVRLATHEDGSSRGFGHVQFASSEEAKKALELH 371
Query: 139 GTMLGFYPVRVLPSKTAIAPVNPTFLPRS-------EDEREMCSRTIYCTNIDKKVTQGD 191
G L PVR+ +A + P S + + S++I+ D + +
Sbjct: 372 GCDLDGRPVRL-----DLAHERGAYTPHSRNDTGSFQKQNRGSSQSIFVKGFDSSLEESK 426
Query: 192 IKLFFE---SVCGEVQRLRLLGDYQ--HSTRIAFVEFAMAESAIAALNCSGAVLGSLPIR 246
I+ E + CGE+ R+ + D + S IA+++F S AL SG+ LG +
Sbjct: 427 IRESLEGHFADCGEITRVSVPMDRETGASKGIAYIDFKDQASFSKALELSGSDLGGYNLY 486
Query: 247 VSPSK 251
V +K
Sbjct: 487 VDEAK 491
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 72 QQDEVIRRTVYVSDIDQQVTE----EQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEF 125
+Q+ ++++V D + E E L F CG++ + D + A+++F
Sbjct: 404 KQNRGSSQSIFVKGFDSSLEESKIRESLEGHFADCGEITRVSVPMDRETGASKGIAYIDF 463
Query: 126 TDEEGARAALSLAGTMLGFYPVRVLPSK 153
D+ AL L+G+ LG Y + V +K
Sbjct: 464 KDQASFSKALELSGSDLGGYNLYVDEAK 491
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 20/166 (12%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGA-RAALSL 137
++Y D+D +VTE L LF VV R+C D N L +A++ F++ A RA +L
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 138 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFE 197
T L P+R++ S R R I+ N+D + D K FE
Sbjct: 110 NYTPLFDRPIRIMLSN------------RDPSTRLSGKGNIFIKNLDASI---DNKALFE 154
Query: 198 --SVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAALNCSGAVL 240
S G + ++ D ++ FV+F ESA AA++ +L
Sbjct: 155 TFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGML 200
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 21/179 (11%)
Query: 66 CRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-F 120
CR +Q+D +R+T V++ ++D + + L F G ++ C++ D N + +
Sbjct: 132 CRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGY 191
Query: 121 AFVEF-TDEEGARAALSLAGTMLGFYPVRV---LPSKTAIAPVNPTFLPRSEDEREMCSR 176
FV + TDE ++A + G +L V V +P K + DE +
Sbjct: 192 GFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKF---------DEMKANFT 242
Query: 177 TIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAMAESAIAAL 233
IY NI+ +VT + + FE G+V L D + S FV F E A A+
Sbjct: 243 NIYVKNINPEVTDDEFRTLFEKY-GDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAV 300
Score = 39.3 bits (90), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 71/165 (43%), Gaps = 17/165 (10%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEF-TDEEGARAALS 136
++YV ++D VTE L LF G V R+C D L +A+V + T +G +A
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 137 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 196
L T++ P R++ S+ +P R+ ++ N+D + + F
Sbjct: 122 LNYTLIKGRPCRIMWSQR-----DPAL-------RKTGQGNVFIKNLDVAIDNKALHDTF 169
Query: 197 ESVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAALNCSGAVL 240
+ G + ++ D +++ FV + E+A A+ +L
Sbjct: 170 -AAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGML 213
>sp|Q54ZS8|PABP2_DICDI Polyadenylate-binding protein 2 OS=Dictyostelium discoideum
GN=pabpn1 PE=3 SV=1
Length = 222
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 169 DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAMA 226
D+ E+ SR++Y N+D K T I +F+S CG V R+ +L D H +VEF
Sbjct: 94 DQEEIDSRSVYVGNVDYKSTHDQILAYFQS-CGTVNRITILSDKTTGHPKGCCYVEFVNK 152
Query: 227 ESAIAALNCSGAVLGSLPIRVSPSKT 252
ES I A+ + + ++++P +T
Sbjct: 153 ESIINAMALNDSFFNERQLKITPKRT 178
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 70 NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFA--FVEFTD 127
N Q+E+ R+VYV ++D + T +Q+ F +CG V I D + +VEF +
Sbjct: 92 NTDQEEIDSRSVYVGNVDYKSTHDQILAYFQSCGTVNRITILSDKTTGHPKGCCYVEFVN 151
Query: 128 EEGARAALSLAGTMLGFYPVRVLPSKTAI 156
+E A++L + +++ P +T +
Sbjct: 152 KESIINAMALNDSFFNERQLKITPKRTNL 180
>sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1
Length = 424
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 31/181 (17%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEFTDEEGARAALSL 137
TVYV +D++V+E L LFL G VV+ + D + FVEF EE A A+ +
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 138 AGTMLGFY--PVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLF 195
M+ Y P+RV +K + + ++ I+ N+D ++ D KL
Sbjct: 74 M-NMIKLYGKPIRV--NKAS-----------AHNKNLDVGANIFIGNLDPEI---DEKLL 116
Query: 196 FESVCG--------EVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRV 247
+++ ++ R G+ + I F F +++AI A+N G L + PI V
Sbjct: 117 YDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMN--GQYLCNRPITV 174
Query: 248 S 248
S
Sbjct: 175 S 175
>sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2
SV=1
Length = 424
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 31/181 (17%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEFTDEEGARAALSL 137
TVYV +D++V+E L LFL G VV+ + D + FVEF EE A A+ +
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 138 AGTMLGFY--PVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLF 195
M+ Y P+RV +K + + ++ I+ N+D ++ D KL
Sbjct: 74 M-NMIKLYGKPIRV--NKAS-----------AHNKNLDVGANIFIGNLDPEI---DEKLL 116
Query: 196 FESVCG--------EVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRV 247
+++ ++ R G+ + I F F +++AI A+N G L + PI V
Sbjct: 117 YDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMN--GQYLCNRPITV 174
Query: 248 S 248
S
Sbjct: 175 S 175
>sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1
Length = 424
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 31/181 (17%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEFTDEEGARAALSL 137
TVYV +D++V+E L LFL G VV+ + D + FVEF EE A A+ +
Sbjct: 14 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKI 73
Query: 138 AGTMLGFY--PVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLF 195
M+ Y P+RV +K + + ++ I+ N+D ++ D KL
Sbjct: 74 M-NMIKLYGKPIRV--NKAS-----------AHNKNLDVGANIFIGNLDPEI---DEKLL 116
Query: 196 FESVCG--------EVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRV 247
+++ ++ R G+ + I F F +++AI A+N G L + PI V
Sbjct: 117 YDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMN--GQYLCNRPITV 174
Query: 248 S 248
S
Sbjct: 175 S 175
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 16/177 (9%)
Query: 66 CRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRF 120
CR +Q+D +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 119 CRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 178
Query: 121 AFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSR--TI 178
FV + E A A+ ML L K + + R EM + +
Sbjct: 179 GFVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNV 231
Query: 179 YCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAALN 234
Y N+D+++++ + + FE GE+ L D + +R FV ++ +SA AA++
Sbjct: 232 YIKNLDQEISEEEFRQMFEKF-GEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVD 287
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 17/165 (10%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTD-EEGARAALS 136
++YV ++D VTE L LF + GQV R+C D L +A+V + + +G RA
Sbjct: 49 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 108
Query: 137 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 196
L T++ P R++ S+ +P R+ ++ N+D + + F
Sbjct: 109 LNYTLIKGKPCRIMWSQR-----DPAL-------RKTGQGNVFIKNLDAAIDNKALHDTF 156
Query: 197 ESVCGEVQRLRLLGD-YQHSTRIAFVEFAMAESAIAALNCSGAVL 240
+ G + ++ D + +S FV + AE+A A+ +L
Sbjct: 157 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGML 200
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 84/189 (44%), Gaps = 16/189 (8%)
Query: 65 NCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAF 122
+ +++D+ ++YV ++D VTE L +F G V R+C D L +A+
Sbjct: 32 SSEEKGSKEDQGDNASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAY 91
Query: 123 VEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTN 182
V F ++ AL L + P++ P + + +P R+ + IY N
Sbjct: 92 VNFHNQADGIRALE----ELNYSPIKERPCRIMWSQRDPAL-------RKTGAGNIYIKN 140
Query: 183 IDKKVTQGDIKLFFESVCGEVQRLRLLGD-YQHSTRIAFVEFAMAESAIAAL-NCSGAVL 240
+D + + F S G++ ++ D + +S FV + AESA +A+ + +G +L
Sbjct: 141 LDPAIDNKALHDTF-SAFGQILSCKIATDEFGNSRGFGFVHYESAESAESAIQHVNGMLL 199
Query: 241 GSLPIRVSP 249
+ V P
Sbjct: 200 NDKKVFVGP 208
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 73/174 (41%), Gaps = 16/174 (9%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEFTD-EEGARAALS 136
++YV D+D VT+ QL F G VV R+C D L + +V FT+ ++ ARA
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 137 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 196
L L P+RV+ S R R + I+ N+D+ + + F
Sbjct: 97 LNYIPLYGKPIRVMYSH------------RDPSVRRSGAGNIFIKNLDESIDHKALHDTF 144
Query: 197 ESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAAL-NCSGAVLGSLPIRVSP 249
S V + S FV++A ESA A+ +G +L + V P
Sbjct: 145 SSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGP 198
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFA-FVEF-TDEEGA 131
D+ +YV ++D +++E+L +F G V ++ DPN + + FV F T EE
Sbjct: 313 DKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEAT 372
Query: 132 RAALSLAGTMLGFYPVRV 149
A L+G M+ P+ V
Sbjct: 373 EAMSQLSGKMIESKPLYV 390
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 75/180 (41%), Gaps = 22/180 (12%)
Query: 66 CRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRF 120
CR +Q+D +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 119 CRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDELGNSKGY 178
Query: 121 AFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSE-----DEREMCS 175
FV + E A A+ ML L K +P+ E +E +
Sbjct: 179 GFVHYETAEAANNAIKHVNGML-------LNEKKVFVG---HHIPKKERMSKFEEMKANF 228
Query: 176 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAALN 234
IY NID VT D + FE G++ + D Q +R FV + E+A A++
Sbjct: 229 TNIYVKNIDLDVTDEDFRELFEK-HGDITSASIARDDQGKSRGFGFVNYIRHEAAAVAVD 287
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 17/177 (9%)
Query: 68 TSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEF 125
T+ AQQ ++YV ++D VTE L LF + GQV R+C D L +A+V +
Sbjct: 37 TTAAQQAHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNY 96
Query: 126 -TDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNID 184
+ E+G +A L T++ P R++ S+ +P R+ ++ N+D
Sbjct: 97 NSSEDGEKALEELNYTVIKGKPCRIMWSQR-----DPAL-------RKTGQGNVFIKNLD 144
Query: 185 KKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVL 240
+ + F + G + ++ D +S FV + AE+A A+ +L
Sbjct: 145 HAIDNKALHDTF-AAFGNILSCKVAQDELGNSKGYGFVHYETAEAANNAIKHVNGML 200
>sp|Q9SVV9|AML3_ARATH Protein MEI2-like 3 OS=Arabidopsis thaliana GN=ML3 PE=2 SV=2
Length = 759
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 23/165 (13%)
Query: 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDCRICGDPNSVLRFAFVEFTDEEG 130
E RT++V +I+ V + +L LF G + C+ G F V + D
Sbjct: 162 EHPSRTLFVRNINSNVEDSELQALFEQYGHIRTLYTACKQRG-------FVMVSYNDIRA 214
Query: 131 ARAAL-SLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQ 189
+RAA+ +L G +L R L +I NP+ E+++ T+ N+ V+
Sbjct: 215 SRAAMRALQGKLL---KKRKLDIHFSIPKDNPS-------EKDVNQGTLVVFNLAPSVSN 264
Query: 190 GDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN 234
D++ F V GE++ +R + +H + F + A++A+ ALN
Sbjct: 265 RDLENIF-GVYGEIKEIRETPNKRHHKFVEFFDVRSADAALKALN 308
>sp|Q28165|PABP2_BOVIN Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3
Length = 306
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRI-----CGDPNSVLRFAFVEFTDEE 129
E R++YV ++D T E+L F CG V I G P FA++EF+D+E
Sbjct: 168 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKE 224
Query: 130 GARAALSLAGTMLGFYPVRVLPSKT 154
R +L+L ++ ++V+P +T
Sbjct: 225 SVRTSLALDESLFRGRQIKVIPKRT 249
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 168 EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAM 225
E++ E +R+IY N+D T +++ F CG V R+ +L D H A++EF+
Sbjct: 164 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 222
Query: 226 AESAIAALNCSGAVLGSLPIRVSPSKT 252
ES +L ++ I+V P +T
Sbjct: 223 KESVRTSLALDESLFRGRQIKVIPKRT 249
>sp|Q8CCS6|PABP2_MOUSE Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3
Length = 302
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 10/100 (10%)
Query: 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRI-----CGDPNSVLRFAFVEFTDEE 129
E R++YV ++D T E+L F CG V I G P FA++EF+D+E
Sbjct: 164 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKE 220
Query: 130 GARAALSLAGTMLGFYPVRVLPSKTAIAPVNPT--FLPRS 167
R +L+L ++ ++V+P +T ++ T PRS
Sbjct: 221 SVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRS 260
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 168 EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAM 225
E++ E +R+IY N+D T +++ F CG V R+ +L D H A++EF+
Sbjct: 160 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 218
Query: 226 AESAIAALNCSGAVLGSLPIRVSPSKT 252
ES +L ++ I+V P +T
Sbjct: 219 KESVRTSLALDESLFRGRQIKVIPKRT 245
>sp|Q86U42|PABP2_HUMAN Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3
Length = 306
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRI-----CGDPNSVLRFAFVEFTDEE 129
E R++YV ++D T E+L F CG V I G P FA++EF+D+E
Sbjct: 168 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKE 224
Query: 130 GARAALSLAGTMLGFYPVRVLPSKT 154
R +L+L ++ ++V+P +T
Sbjct: 225 SVRTSLALDESLFRGRQIKVIPKRT 249
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 168 EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAM 225
E++ E +R+IY N+D T +++ F CG V R+ +L D H A++EF+
Sbjct: 164 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSD 222
Query: 226 AESAIAALNCSGAVLGSLPIRVSPSKT 252
ES +L ++ I+V P +T
Sbjct: 223 KESVRTSLALDESLFRGRQIKVIPKRT 249
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 72/174 (41%), Gaps = 21/174 (12%)
Query: 71 AQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFT 126
+Q+D +R++ +++ ++D+ + + L F G ++ C++ D N + FV F
Sbjct: 87 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFE 146
Query: 127 DEEGA-RAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSR-----TIYC 180
+E A RA + G +L V V F R E E E+ +R +Y
Sbjct: 147 TQEAAERAIDKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFTNVYI 195
Query: 181 TNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN 234
N + + +K +F + + D+ S FV F E A A++
Sbjct: 196 KNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVD 249
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 20/166 (12%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEFTDEEGARAAL-S 136
++YV D+ VTE L F G ++ R+C D L +A+V F A AL +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 137 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 196
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 197 E--SVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVL 240
+ S G + +++ D S FV F E+A A++ +L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGML 162
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 72 QQDEVIRR---TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTD- 127
+QD + R +YV ++D + +E+L F G + ++ + F FV F+
Sbjct: 284 KQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGGRSKGFGFVCFSSP 343
Query: 128 EEGARAALSLAGTMLGFYPVRV 149
EE +A + G ++ P+ V
Sbjct: 344 EEATKAVTEMNGRIVATKPLYV 365
>sp|O14327|PAB2_SCHPO Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pab2 PE=3 SV=1
Length = 166
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query: 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRI-----CGDPNSVLRFAFVEFTD 127
++ + ++VYV ++D VT E+L + F +CG V I G P FA++EF++
Sbjct: 49 KESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKG---FAYIEFSE 105
Query: 128 EEGARAALSLAGTMLGFYPVRVLPSKTAI 156
AL L G+ML P++V P +T +
Sbjct: 106 PSLVPNALLLNGSMLHERPLKVTPKRTNV 134
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 169 DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMA 226
D+ + ++++Y N+D VT +++ F S CG V R+ +L D H A++EF+
Sbjct: 48 DKESIDAQSVYVGNVDYSVTPEELQSHFAS-CGSVNRVTILCDKFTGHPKGFAYIEFSEP 106
Query: 227 ESAIAALNCSGAVLGSLPIRVSPSKTPV 254
AL +G++L P++V+P +T V
Sbjct: 107 SLVPNALLLNGSMLHERPLKVTPKRTNV 134
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 84/182 (46%), Gaps = 20/182 (10%)
Query: 77 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAA 134
I ++YV D+ +V+E+ L +F G V + R+C D N+ L +A+V + + A A
Sbjct: 8 ISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERA 67
Query: 135 LSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKL 194
L L P+R + + +P+ R+ ++ N+DK + D K
Sbjct: 68 LD----TLNNTPIRGKACRIMWSQRDPSL-------RKSGVGNVFIKNLDKGI---DHKA 113
Query: 195 FFE--SVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAAL-NCSGAVLGSLPIRVSPS 250
++ S G + +++ D +S++ FV + ESA A+ +G ++ + V P
Sbjct: 114 LYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPF 173
Query: 251 KT 252
K+
Sbjct: 174 KS 175
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR--FAFVEFTD-EEGARAALS 136
+Y+ +ID + ++L +F G + + D + F FV +T +E RA
Sbjct: 285 NLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTE 344
Query: 137 LAGTMLGFYPVRV 149
+ G M+G P+ V
Sbjct: 345 MNGRMIGTKPLYV 357
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 17/165 (10%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTD-EEGARAALS 136
++YV ++D VTE L LF + G V R+C D L +A+V F + E+G +A
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 137 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 196
L T++ P R++ S+ R R+M + ++ N+D + + F
Sbjct: 141 LNYTLIKGRPCRIMWSQ------------RDPSLRKMGTGNVFIKNLDPAIDNKALHDTF 188
Query: 197 ESVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAALNCSGAVL 240
S G++ ++ D + + FV F ESA AA+ +L
Sbjct: 189 -SAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGML 232
Score = 38.9 bits (89), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAAL 135
VY+ ++D ++TE++ + LF G++ + D N R F FV + + E A+ A+
Sbjct: 262 NVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAV 318
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 17/179 (9%)
Query: 66 CRTSNAQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRF 120
CR +Q+D +R+T V++ ++D + + L F G ++ C++ D + +
Sbjct: 126 CRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGY 185
Query: 121 AFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSR--TI 178
FV + E A+ A+ ML L K + R EM + +
Sbjct: 186 GFVHYETAEAAQNAIKHVNGML-------LNDKKVFVGHHIAKKDRQSKFEEMKANFTNV 238
Query: 179 YCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAMAESAIAALNC 235
Y NID+ T+ + + FE GE+ L D + S FV F ++A AA+
Sbjct: 239 YVKNIDQDTTEEEFRDLFEKF-GEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEA 296
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 17/165 (10%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTD-EEGARAALS 136
++YV ++D VTE L LF + GQV R+C D L +A+V + + +G RA
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 137 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 196
L T++ P R++ S+ +P R+ ++ N+D + + F
Sbjct: 116 LNYTLIKGRPCRIMWSQR-----DPAL-------RKTGQGNVFIKNLDTAIDNKALHDTF 163
Query: 197 ESVCGEVQRLRLLGD-YQHSTRIAFVEFAMAESAIAALNCSGAVL 240
+ G + ++ D + +S FV + AE+A A+ +L
Sbjct: 164 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHVNGML 207
>sp|Q6NVP7|PABP2_XENTR Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1
PE=2 SV=1
Length = 296
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRI-----CGDPNSVLRFAFVEFTDEE 129
E R++YV ++D T E+L F CG V I G P FA++EF+D+E
Sbjct: 159 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKG---FAYIEFSDKE 215
Query: 130 GARAALSLAGTMLGFYPVRVLPSKT 154
R +L+L ++ ++V+P +T
Sbjct: 216 SVRTSLALDESLFRGRQIKVVPKRT 240
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 168 EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAM 225
E++ E +R+IY N+D T +++ F CG V R+ +L D H A++EF+
Sbjct: 155 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKYTGHPKGFAYIEFSD 213
Query: 226 AESAIAALNCSGAVLGSLPIRVSPSKT 252
ES +L ++ I+V P +T
Sbjct: 214 KESVRTSLALDESLFRGRQIKVVPKRT 240
>sp|Q7ZXB8|PAB2B_XENLA Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-b
PE=2 SV=1
Length = 295
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRI-----CGDPNSVLRFAFVEFTDEE 129
E R++YV ++D T E+L F CG V I G P FA++EF+D+E
Sbjct: 158 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKG---FAYIEFSDKE 214
Query: 130 GARAALSLAGTMLGFYPVRVLPSKT 154
R +L+L ++ ++V+P +T
Sbjct: 215 SVRTSLALDESLFRGRQIKVVPKRT 239
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 168 EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAM 225
E++ E +R+IY N+D T +++ F CG V R+ +L D H A++EF+
Sbjct: 154 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFTGHPKGFAYIEFSD 212
Query: 226 AESAIAALNCSGAVLGSLPIRVSPSKT 252
ES +L ++ I+V P +T
Sbjct: 213 KESVRTSLALDESLFRGRQIKVVPKRT 239
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 18/165 (10%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD-PNSVLRFAFVEFTDEEGARAALSLA 138
++YV D+D V E L LF V + R+C D + L +A+V F + E A A+
Sbjct: 60 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAME-- 117
Query: 139 GTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFE- 197
L + P+R P + ++ +P+ R ++ N+D + D K +E
Sbjct: 118 --SLNYAPIRDRPIRIMLSNRDPS-------TRLSGKGNVFIKNLDASI---DNKALYET 165
Query: 198 -SVCGEVQRLRLLGD-YQHSTRIAFVEFAMAESAIAALNCSGAVL 240
S G + ++ D S FV+F E+A AA++ +L
Sbjct: 166 FSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGML 210
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 21/173 (12%)
Query: 71 AQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFT 126
+Q+D +R++ +++ +++ + + L F T G ++ C++ D + F FV F
Sbjct: 87 SQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFE 146
Query: 127 DEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSR-----TIYCT 181
E A+ A++ ML + K + F R E E E+ +R IY
Sbjct: 147 THEAAQQAINTMNGML------LNDRKVFVG----HFKSRREREAELGARALEFTNIYVK 196
Query: 182 NIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ-HSTRIAFVEFAMAESAIAAL 233
N+ V + ++ F S G++ ++++ D HS FV F E A A+
Sbjct: 197 NLPVDVDEQGLQDLF-SQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAV 248
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 20/166 (12%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEFTDEEGARAAL-S 136
++YV D+ VTE L F G ++ R+C D L +A++ F A AL +
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 137 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 196
+ ML P+R++ S+ R R+ I+ N++ + D K +
Sbjct: 72 MNFEMLKGQPIRIMWSQ------------RDPGLRKSGVGNIFIKNLEDSI---DNKALY 116
Query: 197 E--SVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVL 240
+ S G + ++ D S FV F E+A A+N +L
Sbjct: 117 DTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNGML 162
Score = 34.3 bits (77), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 67 RTSNAQQDEVIRR---TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFV 123
R +QD + R +YV ++D + +++L F G + ++ + F FV
Sbjct: 279 RFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFV 338
Query: 124 EFTD-EEGARAALSLAGTMLGFYPVRV 149
F+ EE +A + G ++G P+ V
Sbjct: 339 CFSSPEEATKAVTEMNGRIVGTKPLYV 365
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 76/173 (43%), Gaps = 21/173 (12%)
Query: 71 AQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFT 126
+Q+D +R++ V++ ++D+ + + L F G ++ C++ D N +AFV F
Sbjct: 87 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFE 146
Query: 127 DEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSR-----TIYCT 181
+E A A+ ML +V + F R E E E+ ++ +Y
Sbjct: 147 TQEAADKAIEKMNGML-LNDRKVFVGR---------FKSRKEREAELGAKAKEFTNVYIK 196
Query: 182 NIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTR-IAFVEFAMAESAIAAL 233
N ++V +K F S G+ ++++ D ++ FV + E A A+
Sbjct: 197 NFGEEVDDESLKELF-SQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAV 248
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 20/166 (12%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEFTDEEGARAAL-S 136
++YV D+ VTE L F G V+ R+C D L +A+V F A AL +
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 137 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 196
+ ++ P+R++ S+ +P+ R+ ++ N+DK + D K +
Sbjct: 72 MNFDVIKGKPIRIMWSQR-----DPSL-------RKSGVGNVFIKNLDKSI---DNKALY 116
Query: 197 E--SVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVL 240
+ S G + +++ D S AFV F E+A A+ +L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNGML 162
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTD-EEGARAALSLA 138
+Y+ ++D + +E+L F G + ++ + F FV F+ EE +A +
Sbjct: 295 NLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMN 354
Query: 139 GTMLGFYPVRV 149
G ++G P+ V
Sbjct: 355 GRIVGSKPLYV 365
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 20/166 (12%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEFTDEEGARAAL-S 136
++YV D+ Q VTE L F G ++ R+C D L +A+V F A AL +
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 137 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 196
+ ++ PVR++ S+ R R+ I+ N+DK + D K +
Sbjct: 72 MNFDVIKGRPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI---DNKALY 116
Query: 197 E--SVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVL 240
+ S G + +++ D S FV F E+A A++ +L
Sbjct: 117 DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNGML 162
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 69/174 (39%), Gaps = 21/174 (12%)
Query: 71 AQQDEVIRRT----VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFT 126
+Q+D +R++ +++ ++D+ + + L F G ++ C++ D N + FV F
Sbjct: 87 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFE 146
Query: 127 DEEGA-RAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSR-----TIYC 180
+E A RA + G +L V V F R E E E+ +R +Y
Sbjct: 147 TQEAAERAIDKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFTNVYI 195
Query: 181 TNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN 234
N + +K F + + D S FV F E A A++
Sbjct: 196 KNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVD 249
Score = 35.4 bits (80), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 72 QQDEVIRR---TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTD- 127
+QD + R +YV ++D + +E+L FL G + ++ + F FV F+
Sbjct: 284 KQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRSKGFGFVCFSSP 343
Query: 128 EEGARAALSLAGTMLGFYPVRV 149
EE +A + G ++ P+ V
Sbjct: 344 EEATKAVTEMNGRIVATKPLYV 365
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 17/165 (10%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTD-EEGARAALS 136
++YV ++D VTE L LF + GQV R+C D L +A+V + + +G RA
Sbjct: 55 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 137 LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFF 196
L T++ P R++ S+ R R+ ++ N+D + + F
Sbjct: 115 LNYTLIKGKPCRIMWSQ------------RDPALRKTGQGNVFIKNLDSAIDNKALHDTF 162
Query: 197 ESVCGEVQRLRLLGD-YQHSTRIAFVEFAMAESAIAALNCSGAVL 240
+ G + ++ D + +S FV + AE+A A+ +L
Sbjct: 163 -AAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGML 206
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR-FAFVEFTDEEGARAAL 135
VY+ ++D ++ +++ +F G++ + D R F FV F+ E A+AA+
Sbjct: 236 NVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAV 292
>sp|Q8T6B9|PUF68_DROME Poly(U)-binding-splicing factor half pint OS=Drosophila
melanogaster GN=pUf68 PE=1 SV=2
Length = 637
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 88/181 (48%), Gaps = 14/181 (7%)
Query: 81 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLR--FAFVEFTDEEGARAALS-L 137
VYV I ++ E+ + F G + + DP + FAFVE+ EGA+ AL +
Sbjct: 132 VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQM 191
Query: 138 AGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFE 197
G ++G ++V + + P + ++E + +R IY +I +++ DIK FE
Sbjct: 192 NGALMGGRNIKV--GRPSNMPQAQQVIDEVQEEAKSFNR-IYVASIHPDLSEEDIKSVFE 248
Query: 198 SVCGEVQRLRLL-GDYQHSTR-IAFVEFAMAES---AIAALNCSGAVLGSLPIRVSPSKT 252
+ G + +L G H+ + F+E+A ++ AIA++N LG +RV S T
Sbjct: 249 AF-GPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFD--LGGQLLRVGRSIT 305
Query: 253 P 253
P
Sbjct: 306 P 306
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 13/100 (13%)
Query: 50 AFQKRNGYSQGKRRMNC-RTSN---AQQ--DEVIRRT-----VYVSDIDQQVTEEQLATL 98
A ++ NG G R + R SN AQQ DEV +YV+ I ++EE + ++
Sbjct: 187 ALEQMNGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSV 246
Query: 99 FLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS 136
F G ++ C++ ++ + F+E+ +++ A++
Sbjct: 247 FEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIA 286
>sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=3
Length = 960
Score = 47.8 bits (112), Expect = 7e-05, Method: Composition-based stats.
Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 13/165 (7%)
Query: 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSV-----LRFAFVEFTDEEGARAA 134
T+++ +++ TEE+L +F G V C I N + F FVE+ E A+ A
Sbjct: 731 TLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKA 790
Query: 135 L-SLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIK 193
L L G ++ + + V S+ A P T + + R+ + I NI + +I+
Sbjct: 791 LKQLQGHVVDGHKLEVRISERATKPA-VTLARKKQVPRKQTTSKILVRNIPFQAHSREIR 849
Query: 194 LFFESVCGEVQRLRL----LGDYQHSTRIAFVEFAMAESAIAALN 234
F S GE++ +RL G H FV+F + A A N
Sbjct: 850 ELF-STFGELKTVRLPKKMTGTGTHRG-FGFVDFLTKQDAKRAFN 892
>sp|P70372|ELAV1_MOUSE ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=2
Length = 326
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 85/192 (44%), Gaps = 29/192 (15%)
Query: 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEF-TDEE 129
+D++ R + V+ + Q +T+E+L +LF + G+V ++ D L + FV + T ++
Sbjct: 14 RDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKD 73
Query: 130 GARAALSLAGTMLGFYPVRV---LPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKK 186
RA +L G L ++V PS I N +Y + + +
Sbjct: 74 AERAISTLNGLRLQSKTIKVSYARPSSEVIKDAN-----------------LYISGLPRT 116
Query: 187 VTQGDIKLFFESVCGEVQRLRLLGDYQH--STRIAFVEF---AMAESAIAALNCSGAVLG 241
+TQ D++ F S G + R+L D S +AF+ F + AE AI + N
Sbjct: 117 MTQKDVEDMF-SRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGS 175
Query: 242 SLPIRVSPSKTP 253
S PI V + P
Sbjct: 176 SEPITVKFAANP 187
>sp|Q9DDY9|PAB2A_XENLA Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a
PE=2 SV=1
Length = 296
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRI-----CGDPNSVLRFAFVEFTDEE 129
E R++YV ++D T E+L F CG V I G P FA++EF D+E
Sbjct: 159 EADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKG---FAYIEFCDKE 215
Query: 130 GARAALSLAGTMLGFYPVRVLPSKT 154
R +L+L ++ ++V+P +T
Sbjct: 216 SVRTSLALDESLFRGRQIKVVPKRT 240
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 168 EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAM 225
E++ E +R+IY N+D T +++ F CG V R+ +L D H A++EF
Sbjct: 155 EEKMEADARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFTGHPKGFAYIEFCD 213
Query: 226 AESAIAALNCSGAVLGSLPIRVSPSKT 252
ES +L ++ I+V P +T
Sbjct: 214 KESVRTSLALDESLFRGRQIKVVPKRT 240
>sp|Q804A5|EPA2A_XENLA Embryonic polyadenylate-binding protein 2-A OS=Xenopus laevis
GN=Pabpn1l-a PE=1 SV=1
Length = 218
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 167 SEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFA 224
+E+++E+ R++Y N+D T D++ F S CG + R+ +L D H A++EFA
Sbjct: 84 AEEKKEIDKRSVYVGNVDYGGTAQDLEAHF-SSCGSINRITILCDKFSGHPKGYAYIEFA 142
Query: 225 MAESAIAALNCSGAVLGSLPIRVSPSKT 252
S AA+ V I+V P +T
Sbjct: 143 ERNSVDAAVTMDETVFRGRTIKVLPKRT 170
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 69 SNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRI-----CGDPNSVLRFAFV 123
S ++ E+ +R+VYV ++D T + L F +CG + I G P +A++
Sbjct: 83 SAEEKKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKG---YAYI 139
Query: 124 EFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPT 162
EF + AA+++ T+ ++VLP +T + ++ T
Sbjct: 140 EFAERNSVDAAVTMDETVFRGRTIKVLPKRTNMPGISST 178
>sp|O97018|SXL_CHRRU Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2
Length = 307
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 21/159 (13%)
Query: 83 VSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRF--AFVEFTDEEGARAAL-SLAG 139
V+ + Q +T+ +L LF TCG + CRI D + F AFV+F E A+ A+ SL G
Sbjct: 89 VNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNG 148
Query: 140 TMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESV 199
+ ++V ++ + T +Y TN+ + +T +++ F
Sbjct: 149 VTVRNKRLKVSYARPGGESIKDT--------------NLYVTNLPRTITDDELEKIFGKY 194
Query: 200 CGEVQRLRLLGDYQHSTR-IAFVEFAM---AESAIAALN 234
VQ+ L R +AFV F A+ AI+ALN
Sbjct: 195 GNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALN 233
Score = 34.3 bits (77), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 49 TAFQKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDC 108
A + NG + +R+ + + + +YV+++ + +T+++L +F G +V
Sbjct: 141 NAIKSLNGVTVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQK 200
Query: 109 RI-----CGDPNSVLRFAFVEFTDEEGARAALS 136
I G P V AFV F E A+ A+S
Sbjct: 201 NILRDKLTGKPRGV---AFVRFNKREEAQEAIS 230
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.139 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,226,878
Number of Sequences: 539616
Number of extensions: 3577645
Number of successful extensions: 11907
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 296
Number of HSP's that attempted gapping in prelim test: 11484
Number of HSP's gapped (non-prelim): 633
length of query: 264
length of database: 191,569,459
effective HSP length: 115
effective length of query: 149
effective length of database: 129,513,619
effective search space: 19297529231
effective search space used: 19297529231
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)