Query 024696
Match_columns 264
No_of_seqs 200 out of 2103
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 06:39:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024696.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024696hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 8E-33 1.7E-37 245.3 22.9 170 73-257 102-279 (346)
2 TIGR01645 half-pint poly-U bin 100.0 1.2E-31 2.6E-36 249.9 21.3 178 76-257 105-288 (612)
3 KOG0148 Apoptosis-promoting RN 100.0 2E-31 4.3E-36 219.5 17.3 174 78-256 62-241 (321)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.3E-30 7.1E-35 230.9 23.9 208 39-254 57-350 (352)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 8.6E-30 1.9E-34 228.2 21.1 163 77-254 2-172 (352)
6 TIGR01622 SF-CC1 splicing fact 100.0 1.4E-29 3E-34 234.4 22.6 174 76-252 87-265 (457)
7 KOG0144 RNA-binding protein CU 100.0 9.6E-31 2.1E-35 227.4 12.4 180 63-256 19-209 (510)
8 TIGR01628 PABP-1234 polyadenyl 100.0 7.3E-29 1.6E-33 235.1 19.7 162 80-254 2-168 (562)
9 TIGR01648 hnRNP-R-Q heterogene 100.0 8.2E-28 1.8E-32 223.8 22.6 176 74-256 54-310 (578)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 7.8E-28 1.7E-32 223.7 22.1 174 76-253 273-480 (481)
11 TIGR01628 PABP-1234 polyadenyl 100.0 8.4E-28 1.8E-32 227.9 20.7 177 76-253 176-364 (562)
12 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.7E-27 3.8E-32 221.3 21.2 167 78-253 2-174 (481)
13 TIGR01642 U2AF_lg U2 snRNP aux 100.0 4.5E-27 9.7E-32 220.4 22.0 176 73-253 170-375 (509)
14 KOG0117 Heterogeneous nuclear 100.0 5.4E-27 1.2E-31 204.9 19.3 184 70-260 75-338 (506)
15 KOG0131 Splicing factor 3b, su 99.9 9.6E-27 2.1E-31 181.7 11.9 164 77-254 8-178 (203)
16 KOG0145 RNA-binding protein EL 99.9 3.2E-26 6.9E-31 187.9 15.3 168 75-257 38-213 (360)
17 TIGR01642 U2AF_lg U2 snRNP aux 99.9 7.7E-25 1.7E-29 205.3 21.5 176 76-252 293-501 (509)
18 KOG0145 RNA-binding protein EL 99.9 5.8E-25 1.2E-29 180.5 16.2 205 41-253 97-358 (360)
19 KOG0127 Nucleolar protein fibr 99.9 1.2E-24 2.6E-29 194.3 17.0 175 78-253 5-196 (678)
20 KOG0109 RNA-binding protein LA 99.9 3.3E-25 7.2E-30 184.4 11.1 150 79-257 3-154 (346)
21 KOG0123 Polyadenylate-binding 99.9 2.4E-25 5.2E-30 198.7 10.8 218 14-253 20-246 (369)
22 KOG0124 Polypyrimidine tract-b 99.9 7E-25 1.5E-29 187.5 12.1 173 77-255 112-292 (544)
23 KOG0127 Nucleolar protein fibr 99.9 6.9E-24 1.5E-28 189.4 17.8 175 78-253 117-378 (678)
24 KOG0123 Polyadenylate-binding 99.9 8.3E-24 1.8E-28 188.8 16.7 152 79-255 2-155 (369)
25 TIGR01622 SF-CC1 splicing fact 99.9 1E-22 2.3E-27 188.6 20.7 172 78-252 186-447 (457)
26 KOG4205 RNA-binding protein mu 99.9 1.5E-22 3.3E-27 175.2 12.0 170 77-255 5-178 (311)
27 KOG0146 RNA-binding protein ET 99.9 3.7E-22 8.1E-27 164.6 13.4 191 67-258 8-370 (371)
28 KOG0110 RNA-binding protein (R 99.9 5.6E-22 1.2E-26 182.2 13.2 168 80-253 517-693 (725)
29 KOG0147 Transcriptional coacti 99.9 1.6E-22 3.4E-27 181.3 7.2 178 74-253 175-358 (549)
30 KOG0148 Apoptosis-promoting RN 99.8 3.4E-20 7.4E-25 153.2 11.9 139 74-254 2-143 (321)
31 KOG0144 RNA-binding protein CU 99.8 4.3E-20 9.3E-25 161.3 12.7 180 76-256 122-507 (510)
32 KOG0105 Alternative splicing f 99.8 3E-19 6.4E-24 140.2 15.4 159 76-241 4-176 (241)
33 TIGR01645 half-pint poly-U bin 99.8 4.7E-18 1E-22 159.1 21.8 78 76-153 202-282 (612)
34 KOG4211 Splicing factor hnRNP- 99.8 2.1E-18 4.6E-23 153.2 16.5 172 74-250 6-179 (510)
35 KOG4206 Spliceosomal protein s 99.8 4.1E-17 9E-22 132.4 16.6 167 80-251 11-220 (221)
36 PLN03134 glycine-rich RNA-bind 99.7 2.6E-17 5.5E-22 129.0 12.0 81 174-255 33-116 (144)
37 KOG4212 RNA-binding protein hn 99.7 4E-16 8.7E-21 136.8 17.2 175 76-251 42-292 (608)
38 KOG0110 RNA-binding protein (R 99.7 5E-16 1.1E-20 143.3 14.2 173 74-251 381-596 (725)
39 KOG1190 Polypyrimidine tract-b 99.7 1.3E-15 2.9E-20 132.5 16.0 169 78-253 297-491 (492)
40 PLN03134 glycine-rich RNA-bind 99.7 3.4E-16 7.3E-21 122.6 11.1 80 76-155 32-114 (144)
41 KOG0106 Alternative splicing f 99.7 1.3E-16 2.8E-21 130.7 8.9 159 79-250 2-168 (216)
42 KOG1457 RNA binding protein (c 99.7 1.2E-15 2.6E-20 123.3 14.2 164 74-240 30-273 (284)
43 KOG0129 Predicted RNA-binding 99.7 2E-15 4.3E-20 135.2 15.0 160 70-234 251-431 (520)
44 KOG1548 Transcription elongati 99.7 1.6E-14 3.5E-19 123.5 18.9 178 70-250 126-349 (382)
45 KOG0147 Transcriptional coacti 99.6 1.5E-15 3.3E-20 136.7 12.0 166 81-250 281-525 (549)
46 PF00076 RRM_1: RNA recognitio 99.6 2E-15 4.3E-20 103.2 9.5 68 178-246 1-70 (70)
47 PF00076 RRM_1: RNA recognitio 99.6 1.5E-15 3.2E-20 103.8 7.8 68 81-148 1-70 (70)
48 TIGR01659 sex-lethal sex-letha 99.6 5.6E-15 1.2E-19 131.5 11.0 83 172-255 104-189 (346)
49 PLN03120 nucleic acid binding 99.6 1.3E-14 2.8E-19 122.0 11.8 78 77-155 3-80 (260)
50 KOG1456 Heterogeneous nuclear 99.6 6.9E-14 1.5E-18 120.7 14.6 167 72-253 25-199 (494)
51 PLN03120 nucleic acid binding 99.6 2.5E-14 5.5E-19 120.2 11.6 77 175-253 4-80 (260)
52 COG0724 RNA-binding proteins ( 99.6 5.5E-14 1.2E-18 119.9 14.1 156 78-234 115-285 (306)
53 KOG1190 Polypyrimidine tract-b 99.6 1E-13 2.3E-18 120.9 15.4 171 78-254 150-374 (492)
54 KOG0124 Polypyrimidine tract-b 99.6 1.5E-13 3.3E-18 118.4 15.5 206 41-248 169-530 (544)
55 PF14259 RRM_6: RNA recognitio 99.6 4.7E-14 1E-18 96.7 9.7 68 178-246 1-70 (70)
56 TIGR01648 hnRNP-R-Q heterogene 99.5 4.4E-14 9.5E-19 132.3 12.1 122 77-205 232-370 (578)
57 KOG0122 Translation initiation 99.5 2.7E-14 5.9E-19 117.0 9.1 79 174-253 188-269 (270)
58 KOG0125 Ataxin 2-binding prote 99.5 2.8E-14 6.1E-19 121.3 9.4 82 172-254 93-175 (376)
59 KOG0125 Ataxin 2-binding prote 99.5 3.2E-14 6.9E-19 121.0 9.1 80 76-155 94-174 (376)
60 KOG0121 Nuclear cap-binding pr 99.5 2.3E-14 5E-19 106.3 7.2 78 75-152 33-113 (153)
61 PF14259 RRM_6: RNA recognitio 99.5 4.2E-14 9E-19 97.0 7.6 68 81-148 1-70 (70)
62 KOG0107 Alternative splicing f 99.5 3.3E-14 7E-19 111.0 7.5 76 77-155 9-85 (195)
63 KOG1456 Heterogeneous nuclear 99.5 1.1E-12 2.4E-17 113.4 17.5 174 76-253 285-491 (494)
64 KOG0120 Splicing factor U2AF, 99.5 1.6E-13 3.6E-18 124.9 12.8 177 75-252 286-491 (500)
65 PLN03121 nucleic acid binding 99.5 2.6E-13 5.5E-18 112.5 11.2 77 77-154 4-80 (243)
66 PLN03213 repressor of silencin 99.5 1.2E-13 2.5E-18 123.2 9.6 78 173-253 8-88 (759)
67 KOG0122 Translation initiation 99.5 1.5E-13 3.2E-18 112.7 9.3 81 74-154 185-268 (270)
68 KOG0149 Predicted RNA-binding 99.5 1.3E-13 2.7E-18 112.6 8.5 81 176-257 13-95 (247)
69 smart00362 RRM_2 RNA recogniti 99.5 4.4E-13 9.6E-18 90.9 9.6 71 177-248 1-72 (72)
70 KOG0149 Predicted RNA-binding 99.5 1.1E-13 2.4E-18 112.9 7.5 79 76-154 10-90 (247)
71 smart00362 RRM_2 RNA recogniti 99.5 3.5E-13 7.5E-18 91.5 8.9 71 80-150 1-72 (72)
72 KOG0107 Alternative splicing f 99.5 2.5E-13 5.4E-18 106.1 8.2 78 174-255 9-87 (195)
73 KOG0111 Cyclophilin-type pepti 99.5 6.9E-14 1.5E-18 112.9 5.0 87 175-262 10-99 (298)
74 PLN03121 nucleic acid binding 99.4 8.3E-13 1.8E-17 109.4 11.2 76 174-251 4-79 (243)
75 PLN03213 repressor of silencin 99.4 6.5E-13 1.4E-17 118.5 9.4 77 76-154 8-87 (759)
76 KOG4207 Predicted splicing fac 99.4 4.6E-13 1E-17 107.2 7.3 81 174-255 12-95 (256)
77 KOG0130 RNA-binding protein RB 99.4 7.5E-13 1.6E-17 99.2 7.1 79 171-250 68-149 (170)
78 KOG0126 Predicted RNA-binding 99.4 5.9E-14 1.3E-18 110.2 1.2 79 174-253 34-115 (219)
79 KOG0117 Heterogeneous nuclear 99.4 4.9E-12 1.1E-16 111.7 12.4 118 125-252 41-163 (506)
80 KOG0114 Predicted RNA-binding 99.4 3.4E-12 7.4E-17 91.4 9.1 78 74-152 14-92 (124)
81 KOG0121 Nuclear cap-binding pr 99.4 1.6E-12 3.5E-17 96.6 7.1 77 173-250 34-113 (153)
82 KOG0126 Predicted RNA-binding 99.4 8.4E-14 1.8E-18 109.4 -0.3 78 76-153 33-113 (219)
83 smart00360 RRM RNA recognition 99.4 4E-12 8.8E-17 85.8 8.1 68 83-150 1-71 (71)
84 smart00360 RRM RNA recognition 99.4 4.4E-12 9.6E-17 85.6 8.3 68 180-248 1-71 (71)
85 KOG0113 U1 small nuclear ribon 99.4 2.5E-12 5.4E-17 108.3 8.3 79 76-154 99-180 (335)
86 cd00590 RRM RRM (RNA recogniti 99.4 1E-11 2.2E-16 84.5 10.1 72 177-249 1-74 (74)
87 cd00590 RRM RRM (RNA recogniti 99.4 7.4E-12 1.6E-16 85.3 9.3 72 80-151 1-74 (74)
88 KOG4212 RNA-binding protein hn 99.4 4.9E-11 1.1E-15 105.2 16.4 71 176-250 537-608 (608)
89 KOG0113 U1 small nuclear ribon 99.4 5.5E-12 1.2E-16 106.2 10.1 80 173-253 99-181 (335)
90 KOG0114 Predicted RNA-binding 99.3 6E-12 1.3E-16 90.2 8.5 78 174-253 17-95 (124)
91 KOG1365 RNA-binding protein Fu 99.3 3.8E-12 8.2E-17 110.4 8.6 173 78-250 161-359 (508)
92 PF13893 RRM_5: RNA recognitio 99.3 1.1E-11 2.3E-16 81.2 8.1 55 192-250 1-56 (56)
93 KOG4207 Predicted splicing fac 99.3 3E-12 6.5E-17 102.6 6.2 83 74-156 9-94 (256)
94 KOG0120 Splicing factor U2AF, 99.3 5.7E-12 1.2E-16 114.9 8.6 172 77-253 174-369 (500)
95 KOG0131 Splicing factor 3b, su 99.3 4.2E-12 9.1E-17 99.9 5.7 77 174-251 8-87 (203)
96 COG0724 RNA-binding proteins ( 99.3 2.1E-11 4.5E-16 103.9 10.7 77 175-252 115-194 (306)
97 KOG0130 RNA-binding protein RB 99.3 6.5E-12 1.4E-16 94.2 6.1 75 81-155 75-152 (170)
98 KOG0105 Alternative splicing f 99.3 7.6E-12 1.6E-16 98.7 6.6 78 174-253 5-83 (241)
99 PF13893 RRM_5: RNA recognitio 99.3 1.6E-11 3.6E-16 80.3 6.9 55 95-152 1-56 (56)
100 KOG4211 Splicing factor hnRNP- 99.3 9.9E-11 2.1E-15 104.8 13.2 172 77-250 102-355 (510)
101 KOG0108 mRNA cleavage and poly 99.3 1.2E-11 2.7E-16 111.9 7.5 79 176-255 19-100 (435)
102 KOG0111 Cyclophilin-type pepti 99.3 7E-12 1.5E-16 101.4 5.2 82 75-156 7-91 (298)
103 KOG0108 mRNA cleavage and poly 99.3 1.7E-11 3.8E-16 111.0 8.3 76 79-154 19-97 (435)
104 smart00361 RRM_1 RNA recogniti 99.2 6.4E-11 1.4E-15 81.2 8.2 59 189-248 2-70 (70)
105 KOG0109 RNA-binding protein LA 99.2 2.9E-11 6.4E-16 101.6 6.7 75 176-257 3-78 (346)
106 smart00361 RRM_1 RNA recogniti 99.2 1.3E-10 2.8E-15 79.7 7.3 58 92-149 2-69 (70)
107 KOG4454 RNA binding protein (R 99.2 7.2E-12 1.6E-16 101.3 0.8 136 75-234 6-143 (267)
108 KOG4206 Spliceosomal protein s 99.1 1.4E-10 3.1E-15 94.5 7.8 78 175-254 9-91 (221)
109 KOG0146 RNA-binding protein ET 99.1 5E-11 1.1E-15 99.1 3.7 83 174-257 18-105 (371)
110 KOG0112 Large RNA-binding prot 99.1 1.8E-10 3.9E-15 109.4 5.7 163 74-257 368-535 (975)
111 KOG0153 Predicted RNA-binding 99.0 8.7E-10 1.9E-14 94.9 8.4 74 174-252 227-302 (377)
112 KOG0128 RNA-binding protein SA 99.0 1.4E-11 3.1E-16 116.2 -3.5 145 79-254 668-816 (881)
113 KOG4210 Nuclear localization s 99.0 8.7E-10 1.9E-14 95.5 7.0 174 77-255 87-266 (285)
114 KOG0153 Predicted RNA-binding 99.0 1.1E-09 2.4E-14 94.2 7.4 77 74-154 224-302 (377)
115 KOG1365 RNA-binding protein Fu 99.0 2.6E-09 5.6E-14 93.1 9.1 172 75-246 57-236 (508)
116 KOG0132 RNA polymerase II C-te 98.9 2.8E-09 6.1E-14 100.0 7.4 75 174-253 420-495 (894)
117 KOG0132 RNA polymerase II C-te 98.9 4.4E-09 9.5E-14 98.8 8.7 76 77-156 420-496 (894)
118 KOG4660 Protein Mei2, essentia 98.9 2.3E-09 5E-14 97.4 5.9 170 75-253 72-250 (549)
119 KOG0226 RNA-binding proteins [ 98.8 5.1E-09 1.1E-13 86.7 5.8 162 81-251 99-268 (290)
120 KOG4208 Nucleolar RNA-binding 98.8 1.3E-08 2.9E-13 81.9 7.9 78 75-152 46-127 (214)
121 KOG4208 Nucleolar RNA-binding 98.8 1.3E-08 2.8E-13 82.0 7.8 80 174-253 48-130 (214)
122 KOG0415 Predicted peptidyl pro 98.8 1.1E-08 2.3E-13 88.5 6.4 81 172-253 236-319 (479)
123 KOG4676 Splicing factor, argin 98.8 3.5E-09 7.6E-14 92.4 3.2 173 78-253 7-226 (479)
124 KOG0415 Predicted peptidyl pro 98.7 1.8E-08 3.8E-13 87.1 5.7 79 76-154 237-318 (479)
125 KOG1457 RNA binding protein (c 98.7 1.5E-07 3.3E-12 76.7 10.5 82 173-255 32-120 (284)
126 KOG4661 Hsp27-ERE-TATA-binding 98.7 5.9E-08 1.3E-12 88.6 8.0 82 173-255 403-487 (940)
127 KOG4307 RNA binding protein RB 98.7 5.6E-08 1.2E-12 90.5 8.0 172 76-249 309-510 (944)
128 KOG4205 RNA-binding protein mu 98.7 1.9E-08 4.1E-13 87.7 4.5 81 174-255 5-87 (311)
129 KOG4661 Hsp27-ERE-TATA-binding 98.7 1E-07 2.2E-12 87.1 9.1 83 76-158 403-488 (940)
130 KOG0533 RRM motif-containing p 98.7 1.1E-07 2.5E-12 79.8 8.5 80 174-254 82-163 (243)
131 KOG2193 IGF-II mRNA-binding pr 98.6 3.8E-09 8.2E-14 93.1 -2.0 150 79-250 2-154 (584)
132 KOG1548 Transcription elongati 98.6 1.4E-07 3.1E-12 81.3 7.6 79 174-253 133-221 (382)
133 KOG1855 Predicted RNA-binding 98.6 1.5E-07 3.4E-12 83.2 7.7 121 12-138 171-307 (484)
134 KOG0116 RasGAP SH3 binding pro 98.6 1.1E-07 2.4E-12 86.0 7.0 77 78-154 288-366 (419)
135 KOG4209 Splicing factor RNPS1, 98.6 1.5E-07 3.2E-12 79.2 6.8 81 172-253 98-180 (231)
136 KOG0151 Predicted splicing reg 98.6 2.3E-07 4.9E-12 86.7 8.6 86 166-252 165-256 (877)
137 KOG0533 RRM motif-containing p 98.6 2.8E-07 6.1E-12 77.5 8.3 80 74-153 79-160 (243)
138 KOG4454 RNA binding protein (R 98.6 2.5E-08 5.4E-13 81.0 1.8 74 174-249 8-83 (267)
139 KOG4209 Splicing factor RNPS1, 98.5 2.1E-07 4.5E-12 78.3 6.7 83 73-155 96-180 (231)
140 KOG0116 RasGAP SH3 binding pro 98.5 3.1E-07 6.7E-12 83.2 8.0 80 175-255 288-369 (419)
141 KOG0106 Alternative splicing f 98.5 2E-07 4.4E-12 76.8 5.1 71 176-253 2-73 (216)
142 KOG4660 Protein Mei2, essentia 98.5 2.4E-07 5.1E-12 84.6 5.6 76 167-246 67-143 (549)
143 PF04059 RRM_2: RNA recognitio 98.4 2E-06 4.4E-11 62.3 8.9 75 79-153 2-85 (97)
144 KOG0151 Predicted splicing reg 98.4 1.6E-06 3.4E-11 81.2 8.5 89 75-163 171-265 (877)
145 KOG0226 RNA-binding proteins [ 98.3 7.2E-07 1.6E-11 74.1 5.1 79 74-152 186-267 (290)
146 PF04059 RRM_2: RNA recognitio 98.3 5.4E-06 1.2E-10 60.1 9.1 78 176-253 2-87 (97)
147 KOG0128 RNA-binding protein SA 98.3 3.7E-08 8E-13 93.6 -3.9 161 76-241 569-735 (881)
148 PF11608 Limkain-b1: Limkain b 98.2 5E-06 1.1E-10 57.7 6.6 67 176-250 3-74 (90)
149 PF11608 Limkain-b1: Limkain b 98.1 2.7E-05 5.8E-10 54.2 7.5 66 79-152 3-74 (90)
150 PF08777 RRM_3: RNA binding mo 98.0 2.3E-05 5E-10 57.9 7.5 68 176-248 2-75 (105)
151 PF08777 RRM_3: RNA binding mo 97.9 3.1E-05 6.6E-10 57.2 6.6 54 79-136 2-55 (105)
152 KOG1995 Conserved Zn-finger pr 97.8 1.7E-05 3.6E-10 69.2 4.2 82 172-254 63-155 (351)
153 KOG4307 RNA binding protein RB 97.8 6.4E-05 1.4E-09 70.6 7.9 75 174-249 866-943 (944)
154 PF14605 Nup35_RRM_2: Nup53/35 97.8 9.1E-05 2E-09 47.6 5.8 52 79-135 2-53 (53)
155 PF08952 DUF1866: Domain of un 97.7 0.00023 5E-09 55.0 8.0 77 172-255 24-109 (146)
156 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00034 7.5E-09 51.0 7.6 77 175-253 6-92 (100)
157 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00031 6.8E-09 51.2 7.2 75 77-152 5-89 (100)
158 COG5175 MOT2 Transcriptional r 97.6 0.00019 4E-09 62.3 6.4 77 78-154 114-202 (480)
159 KOG1995 Conserved Zn-finger pr 97.5 0.00013 2.8E-09 63.7 4.8 80 75-154 63-153 (351)
160 KOG1996 mRNA splicing factor [ 97.4 0.00051 1.1E-08 58.6 6.9 61 189-250 300-364 (378)
161 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00062 1.3E-08 43.7 5.6 52 176-233 2-53 (53)
162 COG5175 MOT2 Transcriptional r 97.4 0.00055 1.2E-08 59.4 6.7 76 176-252 115-202 (480)
163 KOG4210 Nuclear localization s 97.4 0.00035 7.5E-09 60.8 5.6 78 76-153 182-262 (285)
164 KOG0115 RNA-binding protein p5 97.3 0.00074 1.6E-08 56.6 6.6 83 130-234 6-90 (275)
165 KOG2314 Translation initiation 97.3 0.00075 1.6E-08 62.3 7.0 74 174-248 57-139 (698)
166 KOG2202 U2 snRNP splicing fact 97.2 0.00016 3.5E-09 60.5 2.0 60 93-152 83-145 (260)
167 KOG3152 TBP-binding protein, a 97.1 0.0003 6.6E-09 58.8 2.6 70 174-244 73-157 (278)
168 KOG3152 TBP-binding protein, a 97.0 0.00047 1E-08 57.7 2.7 70 77-146 73-157 (278)
169 KOG2416 Acinus (induces apopto 97.0 0.00071 1.5E-08 62.8 3.9 77 171-251 440-520 (718)
170 KOG4849 mRNA cleavage factor I 97.0 0.0007 1.5E-08 59.0 3.6 72 79-150 81-157 (498)
171 KOG1855 Predicted RNA-binding 97.0 0.001 2.2E-08 59.6 4.6 65 173-238 229-309 (484)
172 PF08675 RNA_bind: RNA binding 96.9 0.0051 1.1E-07 42.9 6.8 56 76-138 7-63 (87)
173 PF08952 DUF1866: Domain of un 96.8 0.0034 7.5E-08 48.6 6.1 55 93-153 51-105 (146)
174 KOG4849 mRNA cleavage factor I 96.6 0.002 4.3E-08 56.3 3.7 74 175-249 80-159 (498)
175 KOG0129 Predicted RNA-binding 96.6 0.0082 1.8E-07 55.1 7.7 62 75-136 367-431 (520)
176 PF07576 BRAP2: BRCA1-associat 96.5 0.032 7E-07 41.4 9.2 68 175-242 13-81 (110)
177 PF10309 DUF2414: Protein of u 96.5 0.021 4.5E-07 37.7 6.8 53 78-136 5-60 (62)
178 KOG1996 mRNA splicing factor [ 96.4 0.0098 2.1E-07 50.9 6.3 61 92-152 300-364 (378)
179 KOG2314 Translation initiation 96.3 0.0061 1.3E-07 56.5 5.0 76 76-151 56-140 (698)
180 KOG2202 U2 snRNP splicing fact 96.1 0.0029 6.2E-08 53.2 1.6 62 190-251 83-146 (260)
181 KOG2193 IGF-II mRNA-binding pr 95.9 0.0059 1.3E-07 54.7 2.8 73 176-255 2-78 (584)
182 KOG0112 Large RNA-binding prot 95.8 0.0022 4.8E-08 62.3 -0.1 79 173-252 370-450 (975)
183 PF10567 Nab6_mRNP_bdg: RNA-re 95.8 0.58 1.2E-05 40.4 14.4 161 74-236 11-212 (309)
184 PF07576 BRAP2: BRCA1-associat 95.8 0.13 2.9E-06 38.1 9.2 68 77-144 12-81 (110)
185 KOG4676 Splicing factor, argin 95.7 0.026 5.6E-07 50.3 5.9 74 176-250 8-86 (479)
186 PF10309 DUF2414: Protein of u 95.7 0.085 1.9E-06 34.8 7.0 53 176-234 6-60 (62)
187 KOG2416 Acinus (induces apopto 95.6 0.014 3E-07 54.5 4.0 73 76-152 442-519 (718)
188 PF07292 NID: Nmi/IFP 35 domai 95.3 0.017 3.8E-07 40.9 2.9 73 121-198 1-75 (88)
189 KOG2591 c-Mpl binding protein, 95.2 0.061 1.3E-06 50.0 6.8 70 75-149 172-246 (684)
190 KOG0804 Cytoplasmic Zn-finger 95.2 0.14 3.1E-06 46.5 8.9 73 72-144 68-142 (493)
191 KOG4285 Mitotic phosphoprotein 95.0 0.072 1.6E-06 45.9 6.2 68 79-151 198-266 (350)
192 KOG0804 Cytoplasmic Zn-finger 94.9 0.09 2E-06 47.7 6.8 68 175-242 74-142 (493)
193 PF04847 Calcipressin: Calcipr 94.8 0.11 2.4E-06 42.3 6.8 62 188-254 8-72 (184)
194 PF03467 Smg4_UPF3: Smg-4/UPF3 94.8 0.028 6.2E-07 45.4 3.1 77 76-152 5-95 (176)
195 KOG2068 MOT2 transcription fac 94.5 0.015 3.2E-07 50.8 1.0 77 176-253 78-163 (327)
196 KOG0115 RNA-binding protein p5 94.3 0.056 1.2E-06 45.6 3.9 73 79-151 32-110 (275)
197 KOG2135 Proteins containing th 94.1 0.035 7.6E-07 50.6 2.5 72 178-254 375-447 (526)
198 KOG4285 Mitotic phosphoprotein 93.8 0.34 7.5E-06 41.9 7.7 69 175-249 197-266 (350)
199 PF03467 Smg4_UPF3: Smg-4/UPF3 93.7 0.11 2.5E-06 41.9 4.6 80 175-254 7-99 (176)
200 PF08675 RNA_bind: RNA binding 93.7 0.5 1.1E-05 33.1 7.0 53 176-236 10-63 (87)
201 PF15023 DUF4523: Protein of u 93.7 0.39 8.5E-06 37.1 7.1 73 172-251 83-160 (166)
202 KOG2068 MOT2 transcription fac 93.5 0.039 8.4E-07 48.3 1.6 79 76-154 75-162 (327)
203 KOG4574 RNA-binding protein (c 93.4 0.065 1.4E-06 52.2 3.0 71 180-255 303-376 (1007)
204 PF15023 DUF4523: Protein of u 92.6 0.49 1.1E-05 36.6 6.2 72 75-152 83-159 (166)
205 PF04847 Calcipressin: Calcipr 92.3 0.37 8.1E-06 39.2 5.7 60 91-154 8-70 (184)
206 PF03880 DbpA: DbpA RNA bindin 91.9 0.89 1.9E-05 31.0 6.5 58 186-250 12-74 (74)
207 KOG2135 Proteins containing th 91.8 0.12 2.6E-06 47.2 2.5 75 77-155 371-446 (526)
208 PF11767 SET_assoc: Histone ly 91.6 0.92 2E-05 30.4 6.0 54 89-149 11-65 (66)
209 KOG2591 c-Mpl binding protein, 89.6 1.5 3.3E-05 41.1 7.5 67 176-247 176-246 (684)
210 PF11767 SET_assoc: Histone ly 88.9 2 4.3E-05 28.8 5.8 54 186-247 11-65 (66)
211 PF14111 DUF4283: Domain of un 88.6 1.2 2.6E-05 34.5 5.5 121 89-221 28-150 (153)
212 KOG4574 RNA-binding protein (c 88.4 0.44 9.6E-06 46.7 3.3 71 81-155 301-374 (1007)
213 KOG4483 Uncharacterized conser 88.1 1.5 3.2E-05 39.6 6.1 68 69-141 382-450 (528)
214 KOG2253 U1 snRNP complex, subu 88.0 0.61 1.3E-05 44.5 3.9 70 172-249 37-107 (668)
215 PF03880 DbpA: DbpA RNA bindin 87.9 2.8 6E-05 28.5 6.3 57 89-152 12-74 (74)
216 KOG2253 U1 snRNP complex, subu 87.1 0.072 1.6E-06 50.5 -2.7 145 76-234 38-194 (668)
217 KOG4213 RNA-binding protein La 85.9 0.9 1.9E-05 36.4 3.2 129 12-148 44-180 (205)
218 KOG2318 Uncharacterized conser 76.3 15 0.00032 35.0 8.0 78 172-249 171-304 (650)
219 KOG4410 5-formyltetrahydrofola 74.5 9.8 0.00021 32.9 5.9 48 79-130 331-379 (396)
220 PF03468 XS: XS domain; Inter 73.2 3.8 8.2E-05 30.7 2.9 57 79-136 9-75 (116)
221 PRK14548 50S ribosomal protein 72.7 17 0.00038 25.5 5.9 56 178-234 23-79 (84)
222 TIGR03636 L23_arch archaeal ri 72.1 20 0.00042 24.8 6.0 57 177-234 15-72 (77)
223 COG5594 Uncharacterized integr 71.7 3.9 8.4E-05 40.4 3.2 40 74-113 204-246 (827)
224 cd08035 LARP_4 La RNA-binding 66.7 3.8 8.2E-05 28.1 1.5 33 12-47 29-61 (75)
225 cd08038 LARP_2 La RNA-binding 61.7 5.1 0.00011 27.4 1.4 32 12-46 29-60 (73)
226 PF03468 XS: XS domain; Inter 60.1 14 0.0003 27.6 3.7 47 177-225 10-65 (116)
227 cd08037 LARP_1 La RNA-binding 59.2 5.9 0.00013 27.1 1.4 20 13-33 30-49 (73)
228 cd08036 LARP_5 La RNA-binding 56.5 7.6 0.00016 26.6 1.5 32 12-46 29-60 (75)
229 KOG2318 Uncharacterized conser 56.4 55 0.0012 31.3 7.5 77 75-151 171-304 (650)
230 PF15513 DUF4651: Domain of un 49.4 48 0.001 21.8 4.3 20 93-112 9-28 (62)
231 KOG4483 Uncharacterized conser 48.9 48 0.001 30.2 5.7 54 176-235 392-446 (528)
232 cd08032 LARP_7 La RNA-binding 47.9 12 0.00027 26.1 1.6 33 12-47 36-68 (82)
233 cd08034 LARP_1_2 La RNA-bindin 44.8 14 0.00031 25.2 1.4 20 12-32 29-48 (73)
234 cd08033 LARP_6 La RNA-binding 44.1 14 0.00031 25.4 1.4 34 12-48 31-64 (77)
235 PF14893 PNMA: PNMA 44.1 20 0.00043 32.0 2.6 52 77-128 17-72 (331)
236 smart00715 LA Domain in the RN 44.1 13 0.00029 25.8 1.2 32 13-47 34-65 (80)
237 PRK05738 rplW 50S ribosomal pr 43.7 48 0.001 23.6 4.1 36 178-213 22-58 (92)
238 PF05383 La: La domain; Inter 43.7 15 0.00031 24.1 1.3 19 13-32 29-47 (61)
239 KOG4410 5-formyltetrahydrofola 43.1 33 0.00072 29.8 3.7 46 176-226 331-377 (396)
240 cd08028 LARP_3 La RNA-binding 42.0 15 0.00032 25.7 1.2 33 13-48 35-67 (82)
241 KOG4019 Calcineurin-mediated s 40.8 25 0.00054 28.4 2.5 74 176-254 11-91 (193)
242 PF07292 NID: Nmi/IFP 35 domai 40.4 39 0.00085 23.9 3.2 31 219-249 1-33 (88)
243 PTZ00191 60S ribosomal protein 38.1 1.3E+02 0.0027 23.5 5.9 56 178-234 84-140 (145)
244 PF13046 DUF3906: Protein of u 38.1 37 0.0008 22.5 2.5 34 90-123 30-63 (64)
245 PF00276 Ribosomal_L23: Riboso 37.9 83 0.0018 22.3 4.6 49 178-226 22-83 (91)
246 CHL00030 rpl23 ribosomal prote 37.7 64 0.0014 23.1 4.0 38 177-214 20-58 (93)
247 PF10567 Nab6_mRNP_bdg: RNA-re 37.6 72 0.0016 27.9 4.9 76 175-251 15-106 (309)
248 cd08031 LARP_4_5_like La RNA-b 37.0 21 0.00045 24.5 1.3 32 12-46 29-60 (75)
249 KOG2891 Surface glycoprotein [ 36.9 35 0.00076 29.5 2.9 38 75-112 146-195 (445)
250 PF02714 DUF221: Domain of unk 35.7 76 0.0016 27.8 5.1 55 121-197 1-56 (325)
251 KOG4019 Calcineurin-mediated s 34.5 57 0.0012 26.4 3.6 78 78-159 10-94 (193)
252 KOG0156 Cytochrome P450 CYP2 s 34.1 84 0.0018 29.7 5.3 60 178-245 35-97 (489)
253 COG0018 ArgS Arginyl-tRNA synt 33.6 2.9E+02 0.0063 26.8 8.8 99 91-213 59-167 (577)
254 KOG1295 Nonsense-mediated deca 33.4 51 0.0011 29.8 3.5 66 77-142 6-77 (376)
255 PF07530 PRE_C2HC: Associated 32.5 1.4E+02 0.0031 19.9 4.8 61 190-253 2-65 (68)
256 PF09707 Cas_Cas2CT1978: CRISP 31.9 1.3E+02 0.0028 21.2 4.7 48 78-126 25-72 (86)
257 COG3254 Uncharacterized conser 31.5 1.9E+02 0.004 21.2 5.5 43 93-136 27-69 (105)
258 cd08029 LA_like_fungal La-moti 31.3 20 0.00044 24.6 0.5 33 11-47 30-62 (76)
259 cd07323 LAM LA motif RNA-bindi 31.1 31 0.00067 23.6 1.4 34 11-47 28-61 (75)
260 cd08030 LA_like_plant La-motif 31.0 27 0.00059 24.9 1.1 20 12-32 32-51 (90)
261 KOG4365 Uncharacterized conser 30.6 7.7 0.00017 35.6 -2.1 85 176-262 4-91 (572)
262 COG5638 Uncharacterized conser 29.1 1.5E+02 0.0033 27.3 5.6 38 173-210 144-185 (622)
263 PF03439 Spt5-NGN: Early trans 28.5 1.4E+02 0.003 20.7 4.4 33 104-139 33-66 (84)
264 KOG1295 Nonsense-mediated deca 28.0 69 0.0015 29.0 3.4 65 176-240 8-77 (376)
265 cd04889 ACT_PDH-BS-like C-term 27.8 1.5E+02 0.0033 18.1 6.1 43 189-233 12-55 (56)
266 COG0089 RplW Ribosomal protein 27.6 1.7E+02 0.0036 21.1 4.7 38 177-214 22-60 (94)
267 PRK12280 rplW 50S ribosomal pr 27.1 1.1E+02 0.0024 24.2 4.1 37 177-213 23-60 (158)
268 COG3296 Uncharacterized protei 26.8 1.1E+02 0.0025 23.3 3.8 41 12-53 93-134 (143)
269 PF11823 DUF3343: Protein of u 26.5 82 0.0018 21.1 2.9 24 217-240 2-26 (73)
270 KOG3424 40S ribosomal protein 26.3 1.3E+02 0.0028 22.6 4.0 44 186-230 34-83 (132)
271 PF01071 GARS_A: Phosphoribosy 25.9 1.7E+02 0.0036 24.1 5.1 59 187-248 24-86 (194)
272 PF06692 MNSV_P7B: Melon necro 24.5 77 0.0017 20.3 2.2 15 14-28 12-26 (61)
273 PF13689 DUF4154: Domain of un 24.2 1.9E+02 0.0041 22.1 5.0 61 188-252 1-62 (145)
274 PF14111 DUF4283: Domain of un 23.7 1E+02 0.0022 23.5 3.4 43 81-123 107-150 (153)
275 PF11411 DNA_ligase_IV: DNA li 23.5 63 0.0014 18.8 1.5 17 88-104 19-35 (36)
276 KOG2295 C2H2 Zn-finger protein 22.9 13 0.00028 35.2 -2.1 71 175-246 231-304 (648)
277 PRK11558 putative ssRNA endonu 22.6 1.9E+02 0.004 20.9 4.2 48 78-127 27-75 (97)
278 PRK10629 EnvZ/OmpR regulon mod 22.4 3.5E+02 0.0076 20.5 8.1 69 176-251 36-109 (127)
279 PF14893 PNMA: PNMA 21.7 99 0.0021 27.7 3.2 50 176-225 19-71 (331)
280 KOG4008 rRNA processing protei 21.7 72 0.0016 27.0 2.2 34 75-108 37-70 (261)
281 COG0030 KsgA Dimethyladenosine 21.7 1.3E+02 0.0027 26.0 3.7 34 78-111 95-128 (259)
282 PF03742 PetN: PetN ; InterPr 21.6 63 0.0014 17.7 1.2 24 7-31 1-24 (29)
283 PF11456 DUF3019: Protein of u 20.4 1.1E+02 0.0024 22.2 2.8 27 235-262 73-99 (102)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=8e-33 Score=245.25 Aligned_cols=170 Identities=22% Similarity=0.387 Sum_probs=150.1
Q ss_pred ccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEE
Q 024696 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 149 (264)
Q Consensus 73 ~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V 149 (264)
.+....++|||+|||+++|+++|+++|+.||+|.+|+|+.|.. .++|||||+|.++++|++|++ |++..+.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 4556778999999999999999999999999999999998865 578999999999999999998 9999999999999
Q ss_pred eecCCCCCCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHH
Q 024696 150 LPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAE 227 (264)
Q Consensus 150 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~ 227 (264)
.+++.... ....++|||+|||..+|+++|+++|++ ||.|+.++|++++ ++++|||||+|.+.+
T Consensus 182 ~~a~p~~~--------------~~~~~~lfV~nLp~~vtee~L~~~F~~-fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e 246 (346)
T TIGR01659 182 SYARPGGE--------------SIKDTNLYVTNLPRTITDDQLDTIFGK-YGQIVQKNILRDKLTGTPRGVAFVRFNKRE 246 (346)
T ss_pred eccccccc--------------ccccceeEEeCCCCcccHHHHHHHHHh-cCCEEEEEEeecCCCCccceEEEEEECCHH
Confidence 99753210 112478999999999999999999999 6999999999885 688999999999999
Q ss_pred HHHHHHH-hCCceeCC--eeEEEeecCCCCCCC
Q 024696 228 SAIAALN-CSGAVLGS--LPIRVSPSKTPVRPR 257 (264)
Q Consensus 228 ~A~~Ai~-l~g~~~~g--~~l~v~~a~~~~~~~ 257 (264)
+|++|++ ||+..+.| ++|+|.+++.....+
T Consensus 247 ~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~~~ 279 (346)
T TIGR01659 247 EAQEAISALNNVIPEGGSQPLTVRLAEEHGKAK 279 (346)
T ss_pred HHHHHHHHhCCCccCCCceeEEEEECCcccccc
Confidence 9999999 99998865 799999998764433
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=1.2e-31 Score=249.88 Aligned_cols=178 Identities=26% Similarity=0.358 Sum_probs=151.1
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
...++|||+|||+++++++|+++|+.||+|.+|+++.|+. .++|||||+|.+.++|++|++ |||..+.|++|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 4567899999999999999999999999999999998864 579999999999999999998 9999999999999875
Q ss_pred CCCCCCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHH
Q 024696 153 KTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAI 230 (264)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~ 230 (264)
....... + .. ..........++|||+||++++++++|+++|+. ||.|.++++.+++ ++++|||||+|.+.++|.
T Consensus 185 ~~~p~a~-~-~~-~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~-FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~ 260 (612)
T TIGR01645 185 SNMPQAQ-P-II-DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEA-FGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 260 (612)
T ss_pred ccccccc-c-cc-ccccccccccceEEeecCCCCCCHHHHHHHHhh-cCCeeEEEEEecCCCCCcCCeEEEEECCHHHHH
Confidence 3221110 0 00 000111224479999999999999999999999 6999999999986 579999999999999999
Q ss_pred HHHH-hCCceeCCeeEEEeecCCCCCCC
Q 024696 231 AALN-CSGAVLGSLPIRVSPSKTPVRPR 257 (264)
Q Consensus 231 ~Ai~-l~g~~~~g~~l~v~~a~~~~~~~ 257 (264)
+|++ |||+.++|+.|+|.++.+++.+.
T Consensus 261 kAI~amNg~elgGr~LrV~kAi~pP~~~ 288 (612)
T TIGR01645 261 EAIASMNLFDLGGQYLRVGKCVTPPDAL 288 (612)
T ss_pred HHHHHhCCCeeCCeEEEEEecCCCcccc
Confidence 9998 99999999999999998765543
No 3
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=2e-31 Score=219.46 Aligned_cols=174 Identities=25% Similarity=0.371 Sum_probs=152.0
Q ss_pred CcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecCC
Q 024696 78 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 154 (264)
Q Consensus 78 ~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~ 154 (264)
...+||+.|...++-++|++.|.+||+|.++++++|.+ +||||+||.|-..++|+.||+ |||+.|++|.|+.+|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 45599999999999999999999999999999999986 479999999999999999998 999999999999999965
Q ss_pred CCCCCCCCCCC--CCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHH
Q 024696 155 AIAPVNPTFLP--RSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAA 232 (264)
Q Consensus 155 ~~~~~~~~~~~--~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~A 232 (264)
.....+..... .--.+..+.+++|||||++..++|+++++.|++ ||.|.+|++++++ ||+||.|++.|+|.+|
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~-fG~I~EVRvFk~q----GYaFVrF~tkEaAahA 216 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSP-FGPIQEVRVFKDQ----GYAFVRFETKEAAAHA 216 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhccc-CCcceEEEEeccc----ceEEEEecchhhHHHH
Confidence 54322222110 111233567899999999999999999999999 6999999999987 4999999999999999
Q ss_pred HH-hCCceeCCeeEEEeecCCCCCC
Q 024696 233 LN-CSGAVLGSLPIRVSPSKTPVRP 256 (264)
Q Consensus 233 i~-l~g~~~~g~~l~v~~a~~~~~~ 256 (264)
|. +||.++.|+.+++.|.|.....
T Consensus 217 Iv~mNntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 217 IVQMNNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred HHHhcCceeCceEEEEeccccCCCC
Confidence 98 9999999999999999877543
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=3.3e-30 Score=230.91 Aligned_cols=208 Identities=20% Similarity=0.317 Sum_probs=158.1
Q ss_pred hHHHHHhhhcccccccCCCCCCccccccccccccccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--C
Q 024696 39 SLIKVLCLFNTAFQKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--S 116 (264)
Q Consensus 39 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~ 116 (264)
.+.++|...+|..... ..+.........+.....+|||+|||.++++++|+++|+.||.|..+.++.+.. .
T Consensus 57 ~A~~Ai~~l~g~~l~g-------~~i~v~~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~ 129 (352)
T TIGR01661 57 DAEKAVNSLNGLRLQN-------KTIKVSYARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGL 129 (352)
T ss_pred HHHHHHhhcccEEECC-------eeEEEEeecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCC
Confidence 4566777777754431 111111112222334567899999999999999999999999999999988763 5
Q ss_pred CceEEEEEecCHHHHHHHHH-hcCCCCCC--cceEEeecCCCCCCCC------------CCCC-----------------
Q 024696 117 VLRFAFVEFTDEEGARAALS-LAGTMLGF--YPVRVLPSKTAIAPVN------------PTFL----------------- 164 (264)
Q Consensus 117 s~G~afV~F~~~~~a~~Ai~-l~~~~~~g--~~l~V~~s~~~~~~~~------------~~~~----------------- 164 (264)
++|||||+|.+.++|..|++ |||..+.| .+|.|.++........ +...
T Consensus 130 ~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (352)
T TIGR01661 130 SKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMH 209 (352)
T ss_pred cCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCcc
Confidence 78999999999999999998 99999876 5788888643220000 0000
Q ss_pred ------------------------------------CCCcc-------------ccccCCceEEEeCCCCCCCHHHHHHH
Q 024696 165 ------------------------------------PRSED-------------EREMCSRTIYCTNIDKKVTQGDIKLF 195 (264)
Q Consensus 165 ------------------------------------~~~~~-------------~~~~~~~~l~V~nL~~~~te~~L~~~ 195 (264)
+.... .....+.+|||+|||+.+++++|+++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~ 289 (352)
T TIGR01661 210 HAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQL 289 (352)
T ss_pred CcccccccCcchhhhhhhhhhhhcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHH
Confidence 00000 00112347999999999999999999
Q ss_pred hhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecCCCC
Q 024696 196 FESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTPV 254 (264)
Q Consensus 196 F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~~~~ 254 (264)
|++ ||.|.+++|++|. +.++|||||+|.+.++|.+|++ |||..++|+.|+|.|+.++.
T Consensus 290 F~~-fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 290 FGP-FGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHh-CCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 999 6999999999986 7899999999999999999998 99999999999999998774
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=8.6e-30 Score=228.20 Aligned_cols=163 Identities=23% Similarity=0.436 Sum_probs=145.5
Q ss_pred CCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecC
Q 024696 77 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 153 (264)
Q Consensus 77 ~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~ 153 (264)
...+|||+|||.+++|++|+++|+.||+|.+|++++++. .++|||||+|.+.++|++|++ |||..+.|++|+|.+++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 357899999999999999999999999999999999864 578999999999999999998 99999999999999974
Q ss_pred CCCCCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHH
Q 024696 154 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIA 231 (264)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~ 231 (264)
.... .....+|||+|||..+++++|+++|++ ||.|..+.+..+. +.++|||||+|.+.++|++
T Consensus 82 ~~~~--------------~~~~~~l~v~~l~~~~~~~~l~~~f~~-~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ 146 (352)
T TIGR01661 82 PSSD--------------SIKGANLYVSGLPKTMTQHELESIFSP-FGQIITSRILSDNVTGLSKGVGFIRFDKRDEADR 146 (352)
T ss_pred cccc--------------ccccceEEECCccccCCHHHHHHHHhc-cCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHH
Confidence 2210 113478999999999999999999999 6999999998875 6789999999999999999
Q ss_pred HHH-hCCceeCC--eeEEEeecCCCC
Q 024696 232 ALN-CSGAVLGS--LPIRVSPSKTPV 254 (264)
Q Consensus 232 Ai~-l~g~~~~g--~~l~v~~a~~~~ 254 (264)
|++ |||..+.| .+|.|.|+.++.
T Consensus 147 ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 147 AIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred HHHHhCCCccCCCceeEEEEECCCCC
Confidence 998 99999877 679999987664
No 6
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=1.4e-29 Score=234.41 Aligned_cols=174 Identities=28% Similarity=0.368 Sum_probs=148.5
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEeecC
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 153 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~s~ 153 (264)
...++|||+|||..+++++|+++|+.||.|.+|.++.+.. .++|||||+|.+.++|.+|++++|..+.|++|.|.++.
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecc
Confidence 4577899999999999999999999999999999999864 57899999999999999999999999999999999864
Q ss_pred CCCCCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHH
Q 024696 154 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIA 231 (264)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~ 231 (264)
.......... .......+..++|||+|||..+++++|+++|++ ||.|..|.+..++ ++++|||||+|.+.++|.+
T Consensus 167 ~~~~~~~~~~--~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~-~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 167 AEKNRAAKAA--THQPGDIPNFLKLYVGNLHFNITEQELRQIFEP-FGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred hhhhhhhhcc--cccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHh-cCCeEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 3221111000 000011223689999999999999999999999 6999999999876 5799999999999999999
Q ss_pred HHH-hCCceeCCeeEEEeecCC
Q 024696 232 ALN-CSGAVLGSLPIRVSPSKT 252 (264)
Q Consensus 232 Ai~-l~g~~~~g~~l~v~~a~~ 252 (264)
|++ |||..+.|++|+|.|++.
T Consensus 244 A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 244 ALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred HHHhcCCcEECCEEEEEEEccC
Confidence 998 999999999999999764
No 7
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=9.6e-31 Score=227.39 Aligned_cols=180 Identities=23% Similarity=0.336 Sum_probs=152.0
Q ss_pred ccccccccccccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcC
Q 024696 63 RMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAG 139 (264)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~ 139 (264)
+.+......+..+.+.-++|||.+|..++|.||+++|++||.|.+|.+++|+. .++|||||.|.+.++|.+|+. |++
T Consensus 19 ~~~~~~~~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn 98 (510)
T KOG0144|consen 19 ADNGSLDHTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHN 98 (510)
T ss_pred hhcCCCCCCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhc
Confidence 34444444555567778899999999999999999999999999999999986 479999999999999999997 766
Q ss_pred CC-CCC--cceEEeecCCCCCCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCc
Q 024696 140 TM-LGF--YPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHS 215 (264)
Q Consensus 140 ~~-~~g--~~l~V~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-~~~ 215 (264)
+. +-| .+|.|++++.+ .++-...++||||-|+..+||.|++++|++ ||.|++|.|.+|+ +.+
T Consensus 99 ~ktlpG~~~pvqvk~Ad~E-------------~er~~~e~KLFvg~lsK~~te~evr~iFs~-fG~Ied~~ilrd~~~~s 164 (510)
T KOG0144|consen 99 QKTLPGMHHPVQVKYADGE-------------RERIVEERKLFVGMLSKQCTENEVREIFSR-FGHIEDCYILRDPDGLS 164 (510)
T ss_pred ccccCCCCcceeecccchh-------------hhccccchhhhhhhccccccHHHHHHHHHh-hCccchhhheecccccc
Confidence 55 544 58888887432 222234589999999999999999999999 6999999999988 889
Q ss_pred eeEEEEEECCHHHHHHHHH-hCCc-eeCC--eeEEEeecCCCCCC
Q 024696 216 TRIAFVEFAMAESAIAALN-CSGA-VLGS--LPIRVSPSKTPVRP 256 (264)
Q Consensus 216 ~g~afV~f~~~~~A~~Ai~-l~g~-~~~g--~~l~v~~a~~~~~~ 256 (264)
||||||+|++.+.|..|++ |||. .+.| .+|.|+||.+...+
T Consensus 165 RGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 165 RGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDK 209 (510)
T ss_pred cceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCc
Confidence 9999999999999999999 9985 3444 59999999998543
No 8
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=7.3e-29 Score=235.12 Aligned_cols=162 Identities=29% Similarity=0.431 Sum_probs=145.4
Q ss_pred EEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecCCCC
Q 024696 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAI 156 (264)
Q Consensus 80 ~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~~~ 156 (264)
+|||+|||.++||++|+++|+.||+|.+|++++|.. .++|||||+|.+.++|.+|++ +++..+.|++|+|.|+...
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~- 80 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD- 80 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc-
Confidence 699999999999999999999999999999999875 578999999999999999998 9999999999999997422
Q ss_pred CCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCceeEEEEEECCHHHHHHHHH-
Q 024696 157 APVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN- 234 (264)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~- 234 (264)
...+.....+|||+|||.++++++|+++|+. ||.|..|++..+. ++++|||||+|.+.++|.+|++
T Consensus 81 -----------~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~-~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~ 148 (562)
T TIGR01628 81 -----------PSLRRSGVGNIFVKNLDKSVDNKALFDTFSK-FGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQK 148 (562)
T ss_pred -----------ccccccCCCceEEcCCCccCCHHHHHHHHHh-cCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHH
Confidence 1112234578999999999999999999999 6999999999886 7799999999999999999998
Q ss_pred hCCceeCCeeEEEeecCCCC
Q 024696 235 CSGAVLGSLPIRVSPSKTPV 254 (264)
Q Consensus 235 l~g~~~~g~~l~v~~a~~~~ 254 (264)
+||..+.|+.|.|....+..
T Consensus 149 lng~~~~~~~i~v~~~~~~~ 168 (562)
T TIGR01628 149 VNGMLLNDKEVYVGRFIKKH 168 (562)
T ss_pred hcccEecCceEEEecccccc
Confidence 99999999999998766543
No 9
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=8.2e-28 Score=223.84 Aligned_cols=176 Identities=24% Similarity=0.325 Sum_probs=140.9
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCCCCC-CcceEEe
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALS-LAGTMLG-FYPVRVL 150 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~-~s~G~afV~F~~~~~a~~Ai~-l~~~~~~-g~~l~V~ 150 (264)
.+...++|||+|||++++|++|+++|++||.|.+++++.|.. .++|||||+|.+.++|++|++ ||+..+. |+.|.|.
T Consensus 54 ~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 54 QPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 345668999999999999999999999999999999998853 689999999999999999998 9998875 6776665
Q ss_pred ecCCCCC--------------------------------------CCCCCC-----------------------------
Q 024696 151 PSKTAIA--------------------------------------PVNPTF----------------------------- 163 (264)
Q Consensus 151 ~s~~~~~--------------------------------------~~~~~~----------------------------- 163 (264)
.+..... ..+..+
T Consensus 134 ~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~ 213 (578)
T TIGR01648 134 ISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHV 213 (578)
T ss_pred ccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCce
Confidence 5421000 000000
Q ss_pred ------CCCC--ccccccCCceEEEeCCCCCCCHHHHHHHhhhcC--CceEEEEEeccCCCceeEEEEEECCHHHHHHHH
Q 024696 164 ------LPRS--EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVC--GEVQRLRLLGDYQHSTRIAFVEFAMAESAIAAL 233 (264)
Q Consensus 164 ------~~~~--~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~--G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai 233 (264)
.+.. ........++|||+||+..+++++|+++|++ | |.|++|.+.+ +||||+|.+.++|.+|+
T Consensus 214 I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~-f~~G~I~rV~~~r------gfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 214 IAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSE-FKPGKVERVKKIR------DYAFVHFEDREDAVKAM 286 (578)
T ss_pred EEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHh-cCCCceEEEEeec------CeEEEEeCCHHHHHHHH
Confidence 0000 0000123478999999999999999999999 8 9999998864 49999999999999999
Q ss_pred H-hCCceeCCeeEEEeecCCCCCC
Q 024696 234 N-CSGAVLGSLPIRVSPSKTPVRP 256 (264)
Q Consensus 234 ~-l~g~~~~g~~l~v~~a~~~~~~ 256 (264)
+ |||..|.|+.|+|.|++|+...
T Consensus 287 ~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 287 DELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred HHhCCCEECCEEEEEEEccCCCcc
Confidence 8 9999999999999999987544
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=7.8e-28 Score=223.67 Aligned_cols=174 Identities=25% Similarity=0.332 Sum_probs=144.6
Q ss_pred CCCcEEEEcCCCC-cCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecC
Q 024696 76 VIRRTVYVSDIDQ-QVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 153 (264)
Q Consensus 76 ~~~~~v~V~nLp~-~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~ 153 (264)
...++|||+|||+ .+|+++|+++|+.||.|.+|+++.++. |+|||+|.+.++|..|++ |||..+.|++|+|.+++
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~---g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~ 349 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKK---ETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSK 349 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC---CEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 3567899999998 699999999999999999999998754 899999999999999998 99999999999999986
Q ss_pred CCCCCCCCC------------CCC----C--Cc-----cccccCCceEEEeCCCCCCCHHHHHHHhhhcCCc--eEEEEE
Q 024696 154 TAIAPVNPT------------FLP----R--SE-----DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGE--VQRLRL 208 (264)
Q Consensus 154 ~~~~~~~~~------------~~~----~--~~-----~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~--V~~v~i 208 (264)
......... +.. + .. ....+++.+|||+|||..+++++|+++|++ ||. |..+++
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~-~G~~~i~~ik~ 428 (481)
T TIGR01649 350 QQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAE-NGVHKVKKFKF 428 (481)
T ss_pred cccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHh-cCCccceEEEE
Confidence 532211100 000 0 00 001245689999999999999999999999 697 888988
Q ss_pred eccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCee------EEEeecCCC
Q 024696 209 LGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLP------IRVSPSKTP 253 (264)
Q Consensus 209 ~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~------l~v~~a~~~ 253 (264)
....+..+++|||+|++.++|.+|+. |||+.+.|+. |+|+||+++
T Consensus 429 ~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 429 FPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred ecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 76655568899999999999999998 9999999985 999999876
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=8.4e-28 Score=227.85 Aligned_cols=177 Identities=25% Similarity=0.410 Sum_probs=149.1
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCCCCC----CcceEE
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALS-LAGTMLG----FYPVRV 149 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~-~s~G~afV~F~~~~~a~~Ai~-l~~~~~~----g~~l~V 149 (264)
...++|||+|||.++|+++|+++|+.||.|.++.++.+.. .++|||||+|.+.++|.+|++ +++..+. |+.+.|
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v 255 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYV 255 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEe
Confidence 4456799999999999999999999999999999998864 568999999999999999998 9999999 999999
Q ss_pred eecCCCCCCCC---CCCC-CCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCceeEEEEEEC
Q 024696 150 LPSKTAIAPVN---PTFL-PRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFA 224 (264)
Q Consensus 150 ~~s~~~~~~~~---~~~~-~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-~~~~g~afV~f~ 224 (264)
.++........ .... ..........+.+|||+||+..+++++|+++|++ ||.|.+++++.+. +.++|||||+|.
T Consensus 256 ~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~-~G~i~~~~i~~d~~g~~~g~gfV~f~ 334 (562)
T TIGR01628 256 GRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSE-CGEITSAKVMLDEKGVSRGFGFVCFS 334 (562)
T ss_pred ecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHh-cCCeEEEEEEECCCCCcCCeEEEEeC
Confidence 88753321100 0000 0001111335578999999999999999999999 6999999999986 789999999999
Q ss_pred CHHHHHHHHH-hCCceeCCeeEEEeecCCC
Q 024696 225 MAESAIAALN-CSGAVLGSLPIRVSPSKTP 253 (264)
Q Consensus 225 ~~~~A~~Ai~-l~g~~~~g~~l~v~~a~~~ 253 (264)
+.++|.+|+. |||..++|++|.|.+++.+
T Consensus 335 ~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 335 NPEEANRAVTEMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred CHHHHHHHHHHhcCCeeCCceeEEEeccCc
Confidence 9999999998 9999999999999999864
No 12
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=1.7e-27 Score=221.33 Aligned_cols=167 Identities=22% Similarity=0.205 Sum_probs=138.7
Q ss_pred CcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-h--cCCCCCCcceEEeecCC
Q 024696 78 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-L--AGTMLGFYPVRVLPSKT 154 (264)
Q Consensus 78 ~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l--~~~~~~g~~l~V~~s~~ 154 (264)
+++|||+|||+++++++|+++|+.||.|.+|.+++++ |||||+|.+.++|++|++ + ++..+.|++|+|+++..
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k----~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGK----RQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCC----CEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 6899999999999999999999999999999998653 799999999999999997 4 67889999999999864
Q ss_pred CCCCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH
Q 024696 155 AIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN 234 (264)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~ 234 (264)
........ ............+|+|+||+..+|+++|+++|+. ||.|.+|.+.++.+ +++|||+|.+.++|.+|++
T Consensus 78 ~~~~~~~~--~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~-~G~V~~v~i~~~~~--~~~afVef~~~~~A~~A~~ 152 (481)
T TIGR01649 78 QEIKRDGN--SDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNP-YGKVLRIVTFTKNN--VFQALVEFESVNSAQHAKA 152 (481)
T ss_pred cccccCCC--CcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhc-cCCEEEEEEEecCC--ceEEEEEECCHHHHHHHHH
Confidence 32221110 0000011122357999999999999999999999 79999999987653 4799999999999999998
Q ss_pred -hCCceeCC--eeEEEeecCCC
Q 024696 235 -CSGAVLGS--LPIRVSPSKTP 253 (264)
Q Consensus 235 -l~g~~~~g--~~l~v~~a~~~ 253 (264)
|||..+.| ++|+|.|+++.
T Consensus 153 ~Lng~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 153 ALNGADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred HhcCCcccCCceEEEEEEecCC
Confidence 99999954 69999999874
No 13
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=4.5e-27 Score=220.42 Aligned_cols=176 Identities=23% Similarity=0.277 Sum_probs=140.8
Q ss_pred ccCCCCcEEEEcCCCCcCCHHHHHHHhhcC------------CCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCC
Q 024696 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTC------------GQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGT 140 (264)
Q Consensus 73 ~~~~~~~~v~V~nLp~~~te~~L~~~F~~~------------G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~l~~~ 140 (264)
......++|||||||+.+|+++|+++|.++ +.|..+.+..+ +|||||+|.+.++|..|++|+|.
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~----kg~afVeF~~~e~A~~Al~l~g~ 245 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKE----KNFAFLEFRTVEEATFAMALDSI 245 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCC----CCEEEEEeCCHHHHhhhhcCCCe
Confidence 345567899999999999999999999974 34555555433 48999999999999999999999
Q ss_pred CCCCcceEEeecCCCCCCCCCC-----CCCC----------CccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEE
Q 024696 141 MLGFYPVRVLPSKTAIAPVNPT-----FLPR----------SEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQR 205 (264)
Q Consensus 141 ~~~g~~l~V~~s~~~~~~~~~~-----~~~~----------~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~ 205 (264)
.+.|++|+|............. ..+. .........++|||+|||..+++++|+++|++ ||.|..
T Consensus 246 ~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~ 324 (509)
T TIGR01642 246 IYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLES-FGDLKA 324 (509)
T ss_pred EeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeE
Confidence 9999999998654322110000 0000 00011234579999999999999999999999 699999
Q ss_pred EEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecCCC
Q 024696 206 LRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTP 253 (264)
Q Consensus 206 v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~~~ 253 (264)
+.++++. |+++|||||+|.+.++|..|++ |||..++|+.|.|.++...
T Consensus 325 ~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~ 375 (509)
T TIGR01642 325 FNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVG 375 (509)
T ss_pred EEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccC
Confidence 9999875 7799999999999999999998 9999999999999998654
No 14
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=5.4e-27 Score=204.95 Aligned_cols=184 Identities=27% Similarity=0.394 Sum_probs=150.3
Q ss_pred cccccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEecCHHHHHHHHH-hcCCCCC-Cc
Q 024696 70 NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLG-FY 145 (264)
Q Consensus 70 ~~~~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~--~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~-g~ 145 (264)
++...+..-+-||||.||.++.|++|..+|+..|+|-+++++.|+ +.++|||||.|.+.++|+.|++ ||+..|. |+
T Consensus 75 weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK 154 (506)
T KOG0117|consen 75 WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK 154 (506)
T ss_pred ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCC
Confidence 444455666779999999999999999999999999999999985 4689999999999999999998 9999885 89
Q ss_pred ceEEeecCCCCC------CCC--------------------------------CCC------------------------
Q 024696 146 PVRVLPSKTAIA------PVN--------------------------------PTF------------------------ 163 (264)
Q Consensus 146 ~l~V~~s~~~~~------~~~--------------------------------~~~------------------------ 163 (264)
.|.|+-|..... +++ ..+
T Consensus 155 ~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~k 234 (506)
T KOG0117|consen 155 LLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIK 234 (506)
T ss_pred EeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCcee
Confidence 998887644110 000 000
Q ss_pred -----------CCCCc--cccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHH
Q 024696 164 -----------LPRSE--DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAI 230 (264)
Q Consensus 164 -----------~~~~~--~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~ 230 (264)
.|..+ .+.....+.|||.||+.++|+|.|+.+|++ ||.|++|+.++| ||||.|.+.++|.
T Consensus 235 lwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~-~G~veRVkk~rD------YaFVHf~eR~dav 307 (506)
T KOG0117|consen 235 LWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNE-FGKVERVKKPRD------YAFVHFAEREDAV 307 (506)
T ss_pred ecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHh-ccceEEeecccc------eeEEeecchHHHH
Confidence 00000 001223468999999999999999999999 599999999877 9999999999999
Q ss_pred HHHH-hCCceeCCeeEEEeecCCCCCCCCCC
Q 024696 231 AALN-CSGAVLGSLPIRVSPSKTPVRPRAPR 260 (264)
Q Consensus 231 ~Ai~-l~g~~~~g~~l~v~~a~~~~~~~~~r 260 (264)
+|++ +||.++.|..|.|.+|||....+-.|
T Consensus 308 kAm~~~ngkeldG~~iEvtLAKP~~k~k~~r 338 (506)
T KOG0117|consen 308 KAMKETNGKELDGSPIEVTLAKPVDKKKKER 338 (506)
T ss_pred HHHHHhcCceecCceEEEEecCChhhhccch
Confidence 9998 99999999999999999997765433
No 15
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=9.6e-27 Score=181.71 Aligned_cols=164 Identities=27% Similarity=0.354 Sum_probs=144.2
Q ss_pred CCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecC
Q 024696 77 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 153 (264)
Q Consensus 77 ~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~ 153 (264)
...+||||||+..++++.|+++|-+.|+|.++++.+|+- ..+||||++|.++++|+.|++ ||...+-|++|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 457899999999999999999999999999999999884 358999999999999999999 99888999999999974
Q ss_pred CCCCCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEE-EEeccC--CCceeEEEEEECCHHHHH
Q 024696 154 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRL-RLLGDY--QHSTRIAFVEFAMAESAI 230 (264)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v-~i~~~~--~~~~g~afV~f~~~~~A~ 230 (264)
... .....+..+||+||.+.++|..|.+.|+. ||.+... +|++++ |+++|||||.|.+.+.+.
T Consensus 88 ~~~-------------~nl~vganlfvgNLd~~vDe~~L~dtFsa-fG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd 153 (203)
T KOG0131|consen 88 AHQ-------------KNLDVGANLFVGNLDPEVDEKLLYDTFSA-FGVLISPPKIMRDPDTGNPKGFGFINYASFEASD 153 (203)
T ss_pred ccc-------------ccccccccccccccCcchhHHHHHHHHHh-ccccccCCcccccccCCCCCCCeEEechhHHHHH
Confidence 111 11123478999999999999999999998 5987664 677776 689999999999999999
Q ss_pred HHHH-hCCceeCCeeEEEeecCCCC
Q 024696 231 AALN-CSGAVLGSLPIRVSPSKTPV 254 (264)
Q Consensus 231 ~Ai~-l~g~~~~g~~l~v~~a~~~~ 254 (264)
.|+. +||+.++++++.|.++.-..
T Consensus 154 ~ai~s~ngq~l~nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 154 AAIGSMNGQYLCNRPITVSYAFKKD 178 (203)
T ss_pred HHHHHhccchhcCCceEEEEEEecC
Confidence 9998 99999999999999986553
No 16
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=3.2e-26 Score=187.91 Aligned_cols=168 Identities=23% Similarity=0.416 Sum_probs=149.9
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEee
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 151 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~ 151 (264)
+.....+.|--||..+|++|++.+|...|+|++|++++|+- .|.||+||.|-++++|++|+. +||-.+..+.|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 34456699999999999999999999999999999999984 578999999999999999998 999999999999999
Q ss_pred cCCCCCCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHH
Q 024696 152 SKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESA 229 (264)
Q Consensus 152 s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A 229 (264)
++ |.+... .+..|||.+||..+|..||.++|++ ||.|..-+|..|. |.++|.+||.|+...+|
T Consensus 118 AR-----------PSs~~I---k~aNLYvSGlPktMtqkelE~iFs~-fGrIItSRiL~dqvtg~srGVgFiRFDKr~EA 182 (360)
T KOG0145|consen 118 AR-----------PSSDSI---KDANLYVSGLPKTMTQKELEQIFSP-FGRIITSRILVDQVTGLSRGVGFIRFDKRIEA 182 (360)
T ss_pred cc-----------CChhhh---cccceEEecCCccchHHHHHHHHHH-hhhhhhhhhhhhcccceecceeEEEecchhHH
Confidence 85 222222 3478999999999999999999999 6999999999887 67999999999999999
Q ss_pred HHHHH-hCCceeCCe--eEEEeecCCCCCCC
Q 024696 230 IAALN-CSGAVLGSL--PIRVSPSKTPVRPR 257 (264)
Q Consensus 230 ~~Ai~-l~g~~~~g~--~l~v~~a~~~~~~~ 257 (264)
..|+. |||+.-.|+ +|.|+|+..|....
T Consensus 183 e~AIk~lNG~~P~g~tepItVKFannPsq~t 213 (360)
T KOG0145|consen 183 EEAIKGLNGQKPSGCTEPITVKFANNPSQKT 213 (360)
T ss_pred HHHHHhccCCCCCCCCCCeEEEecCCccccc
Confidence 99999 999987775 89999998876554
No 17
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.93 E-value=7.7e-25 Score=205.32 Aligned_cols=176 Identities=16% Similarity=0.195 Sum_probs=141.5
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
...++|||+|||+.+|+++|+++|+.||.|..+.++.+.. .++|||||+|.+.++|..|++ |+|..+.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3467899999999999999999999999999999998764 578999999999999999998 9999999999999998
Q ss_pred CCCCCCCCCCCC---------CCC-----ccccccCCceEEEeCCCCC--C--------CHHHHHHHhhhcCCceEEEEE
Q 024696 153 KTAIAPVNPTFL---------PRS-----EDEREMCSRTIYCTNIDKK--V--------TQGDIKLFFESVCGEVQRLRL 208 (264)
Q Consensus 153 ~~~~~~~~~~~~---------~~~-----~~~~~~~~~~l~V~nL~~~--~--------te~~L~~~F~~~~G~V~~v~i 208 (264)
............ +.. ......++.+|++.|+... + ..++|++.|++ ||.|+.|.|
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~-~G~v~~v~i 451 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSK-YGPLINIVI 451 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHh-cCCeeEEEe
Confidence 543221111000 000 0011235688999999642 1 13679999999 799999999
Q ss_pred eccC-----CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 024696 209 LGDY-----QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKT 252 (264)
Q Consensus 209 ~~~~-----~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~~ 252 (264)
+++. +...|+|||+|.+.++|++|++ |||..|+|+.|.+.|...
T Consensus 452 ~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 452 PRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred eccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 8752 2457899999999999999998 999999999999999654
No 18
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=5.8e-25 Score=180.52 Aligned_cols=205 Identities=20% Similarity=0.307 Sum_probs=159.0
Q ss_pred HHHHhhhcccccccCCCCCCccccccccccccccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCc
Q 024696 41 IKVLCLFNTAFQKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVL 118 (264)
Q Consensus 41 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~ 118 (264)
.+++.++||-..- .........+...+......+||++||..+|+.||+.+|++||.|..-+|.-|.. .++
T Consensus 97 e~AintlNGLrLQ-------~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~sr 169 (360)
T KOG0145|consen 97 EKAINTLNGLRLQ-------NKTIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSR 169 (360)
T ss_pred HHHHhhhcceeec-------cceEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceec
Confidence 5667777774431 1112222222333444556799999999999999999999999998888888875 479
Q ss_pred eEEEEEecCHHHHHHHHH-hcCCCCCCc--ceEEeecCCCCCCCCCC---------------------------------
Q 024696 119 RFAFVEFTDEEGARAALS-LAGTMLGFY--PVRVLPSKTAIAPVNPT--------------------------------- 162 (264)
Q Consensus 119 G~afV~F~~~~~a~~Ai~-l~~~~~~g~--~l~V~~s~~~~~~~~~~--------------------------------- 162 (264)
|.+||.|...++|+.|+. +||+.-.|. +|.|+++..........
T Consensus 170 GVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~ 249 (360)
T KOG0145|consen 170 GVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPH 249 (360)
T ss_pred ceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchh
Confidence 999999999999999998 999987654 89999875422111100
Q ss_pred -----CCCCCcc-----------ccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEEC
Q 024696 163 -----FLPRSED-----------EREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFA 224 (264)
Q Consensus 163 -----~~~~~~~-----------~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~ 224 (264)
+.|-..+ .....+.+|||.||.++.+|.-|.++|.+ ||-|..|++++|. ++++|||||++.
T Consensus 250 ~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgp-FGAv~nVKvirD~ttnkCKGfgFVtMt 328 (360)
T KOG0145|consen 250 AAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGP-FGAVTNVKVIRDFTTNKCKGFGFVTMT 328 (360)
T ss_pred hhhccCCCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCc-ccceeeEEEEecCCcccccceeEEEec
Confidence 0000000 01235679999999999999999999999 5999999999997 689999999999
Q ss_pred CHHHHHHHHH-hCCceeCCeeEEEeecCCC
Q 024696 225 MAESAIAALN-CSGAVLGSLPIRVSPSKTP 253 (264)
Q Consensus 225 ~~~~A~~Ai~-l~g~~~~g~~l~v~~a~~~ 253 (264)
+.++|..|+. |||..++++.|.|+|...+
T Consensus 329 NYdEAamAi~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 329 NYDEAAMAIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred chHHHHHHHHHhcCccccceEEEEEEecCC
Confidence 9999999998 9999999999999997654
No 19
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=1.2e-24 Score=194.30 Aligned_cols=175 Identities=22% Similarity=0.265 Sum_probs=147.6
Q ss_pred CcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecCC
Q 024696 78 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 154 (264)
Q Consensus 78 ~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~--s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~ 154 (264)
..||||++||++++.++|.++|+.+|+|..+.++.+.+. ++||+||.|.-.+++++|++ .++..|+|+.|.|..++.
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 379999999999999999999999999999999999874 68999999999999999998 999999999999999865
Q ss_pred CCCCCCCCCC-------CC-C--c--cccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCceeEEEE
Q 024696 155 AIAPVNPTFL-------PR-S--E--DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFV 221 (264)
Q Consensus 155 ~~~~~~~~~~-------~~-~--~--~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-~~~~g~afV 221 (264)
.......... +. . + .....+...|.|+|||+.+..++|..+|+. ||.|..|.|++.. ++-.|||||
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~-~G~V~Ei~IP~k~dgklcGFaFV 163 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSN-FGKVVEIVIPRKKDGKLCGFAFV 163 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhh-cceEEEEEcccCCCCCccceEEE
Confidence 4332211000 00 0 0 000223578999999999999999999999 6999999999865 554499999
Q ss_pred EECCHHHHHHHHH-hCCceeCCeeEEEeecCCC
Q 024696 222 EFAMAESAIAALN-CSGAVLGSLPIRVSPSKTP 253 (264)
Q Consensus 222 ~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~~~ 253 (264)
.|....+|.+|++ +||+.|.|++|-|.||-+.
T Consensus 164 ~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 164 QFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred EEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 9999999999999 9999999999999998654
No 20
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.92 E-value=3.3e-25 Score=184.44 Aligned_cols=150 Identities=27% Similarity=0.443 Sum_probs=138.5
Q ss_pred cEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecCCCCC
Q 024696 79 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIA 157 (264)
Q Consensus 79 ~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~~~~ 157 (264)
-++||||||..+++++|+.+|++||.|.+|.|+++ ||||..++...|..|+. |++..++|..|.|+-|+..
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK-- 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK-- 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc------cceEEeecccccHHHHhhcccceecceEEEEEecccc--
Confidence 46999999999999999999999999999999976 99999999999999998 9999999999999998633
Q ss_pred CCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hC
Q 024696 158 PVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CS 236 (264)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~ 236 (264)
...+.+++|||+.+.++.+||+..|++ ||.|..|+|++| |+||.|+-.++|..|+. |+
T Consensus 75 --------------sk~stkl~vgNis~tctn~ElRa~fe~-ygpviecdivkd------y~fvh~d~~eda~~air~l~ 133 (346)
T KOG0109|consen 75 --------------SKASTKLHVGNISPTCTNQELRAKFEK-YGPVIECDIVKD------YAFVHFDRAEDAVEAIRGLD 133 (346)
T ss_pred --------------CCCccccccCCCCccccCHHHhhhhcc-cCCceeeeeecc------eeEEEEeeccchHHHHhccc
Confidence 224589999999999999999999999 799999999887 99999999999999998 99
Q ss_pred CceeCCeeEEEeecCCCCCCC
Q 024696 237 GAVLGSLPIRVSPSKTPVRPR 257 (264)
Q Consensus 237 g~~~~g~~l~v~~a~~~~~~~ 257 (264)
|.++.|++++|+.+...-+..
T Consensus 134 ~~~~~gk~m~vq~stsrlrta 154 (346)
T KOG0109|consen 134 NTEFQGKRMHVQLSTSRLRTA 154 (346)
T ss_pred ccccccceeeeeeeccccccC
Confidence 999999999999987765433
No 21
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=2.4e-25 Score=198.68 Aligned_cols=218 Identities=22% Similarity=0.363 Sum_probs=179.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHh------hHHHHHhhhcccccccCCCCCCccccccccccccccCCCCcEEEEcCCC
Q 024696 14 GYVCPLLLILSCFKLLVWLLVWYFL------SLIKVLCLFNTAFQKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDID 87 (264)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp 87 (264)
-.+||+++|+.|++. . .+.+.++ .+-++|+++|..... ....+.+|+++++.. |||.||+
T Consensus 20 ~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~---------~~~~rim~s~rd~~~---~~i~nl~ 85 (369)
T KOG0123|consen 20 SPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLK---------GKPIRIMWSQRDPSL---VFIKNLD 85 (369)
T ss_pred cccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccC---------CcEEEeehhccCCce---eeecCCC
Confidence 468999999999999 7 4444333 235566666654432 123456777777766 9999999
Q ss_pred CcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecCCCCCCCCCCCCCC
Q 024696 88 QQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPR 166 (264)
Q Consensus 88 ~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~~~~~~~~~~~~~ 166 (264)
++++..+|.++|+.||+|.+|++..+.+.++|| ||+|+++++|++|++ +||..+.|++|.|...........+...
T Consensus 86 ~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~-- 162 (369)
T KOG0123|consen 86 ESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGE-- 162 (369)
T ss_pred cccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccc--
Confidence 999999999999999999999999999989999 999999999999998 9999999999999887543222211111
Q ss_pred CccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCceeEEEEEECCHHHHHHHHH-hCCceeCCee
Q 024696 167 SEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLP 244 (264)
Q Consensus 167 ~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~ 244 (264)
....-..+++.|++.++++++|.++|++ ||.|..+.++.+. +++++|+||.|.+.++|..|+. +++..+.+..
T Consensus 163 ----~~~~~t~v~vk~~~~~~~~~~l~~~f~~-~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~ 237 (369)
T KOG0123|consen 163 ----YKKRFTNVYVKNLEEDSTDEELKDLFSA-YGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKE 237 (369)
T ss_pred ----hhhhhhhhheeccccccchHHHHHhhcc-cCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCccc
Confidence 1123377999999999999999999999 7999999999987 7799999999999999999999 9999999999
Q ss_pred EEEeecCCC
Q 024696 245 IRVSPSKTP 253 (264)
Q Consensus 245 l~v~~a~~~ 253 (264)
+.|..+...
T Consensus 238 ~~V~~aqkk 246 (369)
T KOG0123|consen 238 LYVGRAQKK 246 (369)
T ss_pred eeecccccc
Confidence 999988763
No 22
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=7e-25 Score=187.54 Aligned_cols=173 Identities=27% Similarity=0.375 Sum_probs=148.3
Q ss_pred CCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecC
Q 024696 77 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 153 (264)
Q Consensus 77 ~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~ 153 (264)
-.+.||||.+++.+.|+.|+..|..||+|.+|.+..|+- .++|||||+|+-+|.|..|++ |||..++||.|+|....
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs 191 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 191 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC
Confidence 457899999999999999999999999999999999985 579999999999999999998 99999999999999642
Q ss_pred CCCCCCCCCCCCC--CccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHH
Q 024696 154 TAIAPVNPTFLPR--SEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESA 229 (264)
Q Consensus 154 ~~~~~~~~~~~~~--~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A 229 (264)
.. +...+- ...+....-+.|||..++++++|+||+.+|+. ||+|.+|.+-+++ +..+||+|++|++..+.
T Consensus 192 Nm-----pQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEA-FG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~ 265 (544)
T KOG0124|consen 192 NM-----PQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEA-FGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQ 265 (544)
T ss_pred CC-----cccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHh-hcceeeEEeeccCCCCCccceeeEEeccccch
Confidence 11 111110 00111234478999999999999999999998 6999999999987 57999999999999999
Q ss_pred HHHHH-hCCceeCCeeEEEeecCCCCC
Q 024696 230 IAALN-CSGAVLGSLPIRVSPSKTPVR 255 (264)
Q Consensus 230 ~~Ai~-l~g~~~~g~~l~v~~a~~~~~ 255 (264)
..|+. ||=+.++|+.|+|..+-+++.
T Consensus 266 ~eAiasMNlFDLGGQyLRVGk~vTPP~ 292 (544)
T KOG0124|consen 266 SEAIASMNLFDLGGQYLRVGKCVTPPD 292 (544)
T ss_pred HHHhhhcchhhcccceEecccccCCCc
Confidence 99998 999999999999999866643
No 23
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=6.9e-24 Score=189.43 Aligned_cols=175 Identities=23% Similarity=0.332 Sum_probs=142.4
Q ss_pred CcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecCCC
Q 024696 78 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS-VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTA 155 (264)
Q Consensus 78 ~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~~ 155 (264)
...|+|+||||.+.+.+|..+|+.||.|.+|.|++...+ -.|||||+|....+|..|++ +|+..+.||+|-|.|+...
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 667999999999999999999999999999999976653 36999999999999999999 9999999999999997431
Q ss_pred CCCCC---------------------C-C----C----------CCC--------------------Cc-----------
Q 024696 156 IAPVN---------------------P-T----F----------LPR--------------------SE----------- 168 (264)
Q Consensus 156 ~~~~~---------------------~-~----~----------~~~--------------------~~----------- 168 (264)
..-.. + . + ... ..
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence 00000 0 0 0 000 00
Q ss_pred ---------cccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-h-
Q 024696 169 ---------DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-C- 235 (264)
Q Consensus 169 ---------~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l- 235 (264)
++......+|||+|||+++|+++|.+.|++ ||.|.++.|+.++ ++++|.|||.|.+..+|+.||. .
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fsk-FG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSK-FGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred cchhccccccccccccceEEEecCCccccHHHHHHHHHh-hccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 000112379999999999999999999999 5999999999876 7899999999999999999997 4
Q ss_pred ----CC-ceeCCeeEEEeecCCC
Q 024696 236 ----SG-AVLGSLPIRVSPSKTP 253 (264)
Q Consensus 236 ----~g-~~~~g~~l~v~~a~~~ 253 (264)
.| ..+.|+.|+|..+-+.
T Consensus 356 pa~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 356 PASEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred ccCCCceEEEeccEEeeeeccch
Confidence 23 6789999999987654
No 24
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=8.3e-24 Score=188.80 Aligned_cols=152 Identities=26% Similarity=0.404 Sum_probs=140.0
Q ss_pred cEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecCCCCC
Q 024696 79 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIA 157 (264)
Q Consensus 79 ~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~~~~ 157 (264)
.++||| +++||..|+++|+.+|+|.++++++|. +|.|||||.|.++++|.+|++ +|...+.|+++++.|+....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~- 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-TSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP- 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-CccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC-
Confidence 368999 889999999999999999999999999 799999999999999999998 99999999999999984211
Q ss_pred CCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hC
Q 024696 158 PVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CS 236 (264)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~ 236 (264)
..+||.||+++++..+|.++|+. ||+|.+|++..+...++|| ||+|++.++|.+|++ +|
T Consensus 77 ------------------~~~~i~nl~~~~~~~~~~d~f~~-~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~n 136 (369)
T KOG0123|consen 77 ------------------SLVFIKNLDESIDNKSLYDTFSE-FGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLN 136 (369)
T ss_pred ------------------ceeeecCCCcccCcHHHHHHHHh-hcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhc
Confidence 22999999999999999999999 6999999999998669999 999999999999999 99
Q ss_pred CceeCCeeEEEeecCCCCC
Q 024696 237 GAVLGSLPIRVSPSKTPVR 255 (264)
Q Consensus 237 g~~~~g~~l~v~~a~~~~~ 255 (264)
|..+.|++|.|........
T Consensus 137 g~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 137 GMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred CcccCCCeeEEeeccchhh
Confidence 9999999999988776544
No 25
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.91 E-value=1e-22 Score=188.56 Aligned_cols=172 Identities=22% Similarity=0.367 Sum_probs=138.1
Q ss_pred CcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecCC
Q 024696 78 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 154 (264)
Q Consensus 78 ~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~ 154 (264)
.++|||+|||..+|+++|+++|+.||.|..|.+..+.. .++|||||+|.+.++|.+|++ |||..+.|++|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 68899999999999999999999999999999998875 468999999999999999998 999999999999999542
Q ss_pred CCCCCC-----------------------------------------CC-------------------CCC---------
Q 024696 155 AIAPVN-----------------------------------------PT-------------------FLP--------- 165 (264)
Q Consensus 155 ~~~~~~-----------------------------------------~~-------------------~~~--------- 165 (264)
...... +. ..+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 110000 00 000
Q ss_pred -----CC--ccccccCCceEEEeCCCCCCC----------HHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHH
Q 024696 166 -----RS--EDEREMCSRTIYCTNIDKKVT----------QGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAES 228 (264)
Q Consensus 166 -----~~--~~~~~~~~~~l~V~nL~~~~t----------e~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~ 228 (264)
.. .........+|+|.||....+ .+||++.|++ ||.|+.|.+... ...|++||+|.+.++
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k-~G~v~~v~v~~~--~~~G~~fV~F~~~e~ 422 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSK-YGGVVHIYVDTK--NSAGKIYLKFSSVDA 422 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHh-cCCeeEEEEeCC--CCceeEEEEECCHHH
Confidence 00 000123567899999965433 3689999999 799999998643 356899999999999
Q ss_pred HHHHHH-hCCceeCCeeEEEeecCC
Q 024696 229 AIAALN-CSGAVLGSLPIRVSPSKT 252 (264)
Q Consensus 229 A~~Ai~-l~g~~~~g~~l~v~~a~~ 252 (264)
|.+|++ |||..|+|+.|.+.|...
T Consensus 423 A~~A~~~lnGr~f~gr~i~~~~~~~ 447 (457)
T TIGR01622 423 ALAAFQALNGRYFGGKMITAAFVVN 447 (457)
T ss_pred HHHHHHHhcCcccCCeEEEEEEEcH
Confidence 999999 999999999999999754
No 26
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.88 E-value=1.5e-22 Score=175.19 Aligned_cols=170 Identities=21% Similarity=0.302 Sum_probs=149.5
Q ss_pred CCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEeecCC
Q 024696 77 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 154 (264)
Q Consensus 77 ~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~s~~ 154 (264)
+.+++||++|+|+++++.|+++|.+||+|.++.+++|+. .++||+||+|.+.+.+..++....+.+.|+.|.+..+..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 788999999999999999999999999999999999986 578999999999999999998777889999999998753
Q ss_pred CCCCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHH
Q 024696 155 AIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAA 232 (264)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~A 232 (264)
....... .......++||++||.++++++++++|.+ ||.|..+.++.|+ ..++||+||+|.+.+++.++
T Consensus 85 r~~~~~~--------~~~~~tkkiFvGG~~~~~~e~~~r~yfe~-~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv 155 (311)
T KOG4205|consen 85 REDQTKV--------GRHLRTKKIFVGGLPPDTTEEDFKDYFEQ-FGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKV 155 (311)
T ss_pred ccccccc--------ccccceeEEEecCcCCCCchHHHhhhhhc-cceeEeeEEeecccccccccceeeEecccccccee
Confidence 3221111 11124579999999999999999999999 6999999999987 56999999999999999999
Q ss_pred HHhCCceeCCeeEEEeecCCCCC
Q 024696 233 LNCSGAVLGSLPIRVSPSKTPVR 255 (264)
Q Consensus 233 i~l~g~~~~g~~l~v~~a~~~~~ 255 (264)
+...-+.++|+.+.|..|.|...
T Consensus 156 ~~~~f~~~~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 156 TLQKFHDFNGKKVEVKRAIPKEV 178 (311)
T ss_pred cccceeeecCceeeEeeccchhh
Confidence 99999999999999999988854
No 27
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=3.7e-22 Score=164.59 Aligned_cols=191 Identities=21% Similarity=0.381 Sum_probs=154.2
Q ss_pred ccccccccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCCC-CC
Q 024696 67 RTSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALS-LAGTM-LG 143 (264)
Q Consensus 67 ~~~~~~~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~-~s~G~afV~F~~~~~a~~Ai~-l~~~~-~~ 143 (264)
....++....+.+++|||-|...-+|+|++.+|..||.|++|.+.+... .+||+|||.|.+..+|..||. |+|.. +-
T Consensus 8 kpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmp 87 (371)
T KOG0146|consen 8 KPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMP 87 (371)
T ss_pred cccccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCC
Confidence 3344445556788999999999999999999999999999999998764 789999999999999999998 88865 33
Q ss_pred --CcceEEeecCCCCC----------------------------------------------------------------
Q 024696 144 --FYPVRVLPSKTAIA---------------------------------------------------------------- 157 (264)
Q Consensus 144 --g~~l~V~~s~~~~~---------------------------------------------------------------- 157 (264)
...|.|+++++...
T Consensus 88 GASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~a 167 (371)
T KOG0146|consen 88 GASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMA 167 (371)
T ss_pred CCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHH
Confidence 35788888765000
Q ss_pred ----------CC-------CCC------------------C---------------------------CC----------
Q 024696 158 ----------PV-------NPT------------------F---------------------------LP---------- 165 (264)
Q Consensus 158 ----------~~-------~~~------------------~---------------------------~~---------- 165 (264)
+. .+. + .+
T Consensus 168 A~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~ 247 (371)
T KOG0146|consen 168 ALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAY 247 (371)
T ss_pred HHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhh
Confidence 00 000 0 00
Q ss_pred ----------------------C------CccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCc
Q 024696 166 ----------------------R------SEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHS 215 (264)
Q Consensus 166 ----------------------~------~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~ 215 (264)
. ......+.++.|||..||.+..+.||...|-. ||.|.+.+++.|. +.+
T Consensus 248 ~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~P-FGhivSaKVFvDRATNQS 326 (371)
T KOG0146|consen 248 AGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLP-FGHIVSAKVFVDRATNQS 326 (371)
T ss_pred hhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhcc-ccceeeeeeeehhccccc
Confidence 0 00001356789999999999999999999999 5999999999887 779
Q ss_pred eeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecCCCCCCCC
Q 024696 216 TRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTPVRPRA 258 (264)
Q Consensus 216 ~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~~~~~~~~ 258 (264)
|-|+||.|+++.+|+.||. |||+.|+-++|+|...+|+...|+
T Consensus 327 KCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanRP 370 (371)
T KOG0146|consen 327 KCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANRP 370 (371)
T ss_pred cceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccccCCC
Confidence 9999999999999999999 999999999999999999876653
No 28
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.87 E-value=5.6e-22 Score=182.22 Aligned_cols=168 Identities=24% Similarity=0.344 Sum_probs=143.6
Q ss_pred EEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC-----CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecC
Q 024696 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-----SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 153 (264)
Q Consensus 80 ~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~-----~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~ 153 (264)
++||.||+++.+.+++...|...|.|.++.|...++ -|.|||||+|.+.++|..|++ |+|..+.|+.|.|..+.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 399999999999999999999999999998876553 267999999999999999998 99999999999999986
Q ss_pred CCCCCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHH
Q 024696 154 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIA 231 (264)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~ 231 (264)
....... ..........++|+|.|+|+..+..+++.+|.. ||.|.+|+|++.. +-.+|||||+|.++.+|..
T Consensus 597 ~k~~~~~-----gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~a-FGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~n 670 (725)
T KOG0110|consen 597 NKPASTV-----GKKKSKKKKGTKILVRNIPFEATKREVRKLFTA-FGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKN 670 (725)
T ss_pred Ccccccc-----ccccccccccceeeeeccchHHHHHHHHHHHhc-ccceeeeccchhhcchhhccceeeeccCcHHHHH
Confidence 1111100 011111223589999999999999999999999 6999999999864 4579999999999999999
Q ss_pred HHH-hCCceeCCeeEEEeecCCC
Q 024696 232 ALN-CSGAVLGSLPIRVSPSKTP 253 (264)
Q Consensus 232 Ai~-l~g~~~~g~~l~v~~a~~~ 253 (264)
|++ |.+..+.|+.|.++|++..
T Consensus 671 A~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 671 AFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred HHHhhcccceechhhheehhccc
Confidence 998 9999999999999999875
No 29
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.87 E-value=1.6e-22 Score=181.32 Aligned_cols=178 Identities=28% Similarity=0.372 Sum_probs=148.7
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEee
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLP 151 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~ 151 (264)
++.+.+++|+..++..+++.+|.++|+.+|.|..|.++.|+. .++|.|||+|.+.+++..|+.|.|+.+.|.+|.|+.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQL 254 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecc
Confidence 456778899999999999999999999999999999999986 579999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCc-cccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHH
Q 024696 152 SKTAIAPVNPTFLPRSE-DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAES 228 (264)
Q Consensus 152 s~~~~~~~~~~~~~~~~-~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~ 228 (264)
+....... ....+... ..-..+-..+|||||++++++++|+.+|++ ||.|+.|.+.+|. |.++|||||+|.+.++
T Consensus 255 sEaeknr~-a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifep-fg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 255 SEAEKNRA-ANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEP-FGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred cHHHHHHH-HhccccccccccccchhhhhhcccccCchHHHHhhhccC-cccceeeeeccccccccccCcceEEEecHHH
Confidence 74322210 00001000 000112233999999999999999999999 5999999999984 8999999999999999
Q ss_pred HHHHHH-hCCceeCCeeEEEeecCCC
Q 024696 229 AIAALN-CSGAVLGSLPIRVSPSKTP 253 (264)
Q Consensus 229 A~~Ai~-l~g~~~~g~~l~v~~a~~~ 253 (264)
|.+|++ |||+++.|+.|+|....-.
T Consensus 333 ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 333 ARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred HHHHHHHhccceecCceEEEEEeeee
Confidence 999998 9999999999999876443
No 30
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=3.4e-20 Score=153.25 Aligned_cols=139 Identities=25% Similarity=0.358 Sum_probs=116.7
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEeecC
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 153 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~s~ 153 (264)
++..+++|||+||+.++||+-|..+|.+.|+|..++++.+ +|+|.|+.
T Consensus 2 ~~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~--------------------------------e~~v~wa~ 49 (321)
T KOG0148|consen 2 GSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--------------------------------ELKVNWAT 49 (321)
T ss_pred CCCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh--------------------------------hhcccccc
Confidence 3567899999999999999999999999999999999866 45666653
Q ss_pred CCCCCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHH
Q 024696 154 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIA 231 (264)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~ 231 (264)
.......+. ...--.+||+.|...++-++|++.|.+ ||+|.++++++|. +++|||+||.|.+.++|+.
T Consensus 50 ~p~nQsk~t---------~~~hfhvfvgdls~eI~~e~lr~aF~p-FGevS~akvirD~~T~KsKGYgFVSf~~k~dAEn 119 (321)
T KOG0148|consen 50 APGNQSKPT---------SNQHFHVFVGDLSPEIDNEKLREAFAP-FGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAEN 119 (321)
T ss_pred CcccCCCCc---------cccceeEEehhcchhcchHHHHHHhcc-ccccccceEeecccCCcccceeEEeccchHHHHH
Confidence 221111110 011357999999999999999999999 5999999999997 7899999999999999999
Q ss_pred HHH-hCCceeCCeeEEEeecCCCC
Q 024696 232 ALN-CSGAVLGSLPIRVSPSKTPV 254 (264)
Q Consensus 232 Ai~-l~g~~~~g~~l~v~~a~~~~ 254 (264)
||+ |||.-+++|.|+-.||.-++
T Consensus 120 AI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 120 AIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred HHHHhCCeeeccceeeccccccCc
Confidence 998 99999999999999985443
No 31
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=4.3e-20 Score=161.26 Aligned_cols=180 Identities=26% Similarity=0.368 Sum_probs=147.4
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCCC-CCC--cceEEe
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALS-LAGTM-LGF--YPVRVL 150 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~-~s~G~afV~F~~~~~a~~Ai~-l~~~~-~~g--~~l~V~ 150 (264)
.+.++||||-|+..+||.+++++|+.||.|++|.|.+|.. .++|||||.|.+.+.|..|++ ||+.. +.| .+|.|+
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 5688999999999999999999999999999999999875 789999999999999999998 99865 555 499999
Q ss_pred ecCCCCCCC-----------------------------------------------------------------------
Q 024696 151 PSKTAIAPV----------------------------------------------------------------------- 159 (264)
Q Consensus 151 ~s~~~~~~~----------------------------------------------------------------------- 159 (264)
|+++...+.
T Consensus 202 FADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~~~~~ 281 (510)
T KOG0144|consen 202 FADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQAAALA 281 (510)
T ss_pred ecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHHHHhh
Confidence 986511000
Q ss_pred ----------------------C-CCC--C------CC------------------------------------------
Q 024696 160 ----------------------N-PTF--L------PR------------------------------------------ 166 (264)
Q Consensus 160 ----------------------~-~~~--~------~~------------------------------------------ 166 (264)
+ +.. . +.
T Consensus 282 ~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~sp~a 361 (510)
T KOG0144|consen 282 AAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTTSPVA 361 (510)
T ss_pred hhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccccccccccCccc
Confidence 0 000 0 00
Q ss_pred ------------------------------------------------------CccccccCCceEEEeCCCCCCCHHHH
Q 024696 167 ------------------------------------------------------SEDEREMCSRTIYCTNIDKKVTQGDI 192 (264)
Q Consensus 167 ------------------------------------------------------~~~~~~~~~~~l~V~nL~~~~te~~L 192 (264)
..+...+.+..+||++||.+.-+.||
T Consensus 362 a~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefgdq~l 441 (510)
T KOG0144|consen 362 ASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFGDQDL 441 (510)
T ss_pred ccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhhhHHH
Confidence 00000234568999999999999999
Q ss_pred HHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecCCCCCC
Q 024696 193 KLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTPVRP 256 (264)
Q Consensus 193 ~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~~~~~~ 256 (264)
-..|.. ||.|...++.-|+ +-++-|+||.|++..+|..||. |||+.+++++++|...+....+
T Consensus 442 ~~~f~p-fG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~np 507 (510)
T KOG0144|consen 442 IATFQP-FGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNNP 507 (510)
T ss_pred HHHhcc-ccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCCC
Confidence 999999 5999999888876 6688899999999999999999 9999999999999998766544
No 32
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=3e-19 Score=140.18 Aligned_cols=159 Identities=19% Similarity=0.240 Sum_probs=127.6
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecCC
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 154 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~ 154 (264)
..++.|||+|||.++.+.+|+++|.+||.|.+|.+..... .-+||||+|++..+|+.|+. .+|..+.|..|+|++...
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g-~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG-PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC-CCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 3578999999999999999999999999999999875543 23799999999999999998 999999999999999765
Q ss_pred CCCCCCCCC------------CCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEE
Q 024696 155 AIAPVNPTF------------LPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVE 222 (264)
Q Consensus 155 ~~~~~~~~~------------~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~ 222 (264)
........- ..............|.|.+||+.-+++||++.+.+. |.|-...+.+| |.+.|+
T Consensus 83 gr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmRea-GdvCfadv~rD-----g~GvV~ 156 (241)
T KOG0105|consen 83 GRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREA-GDVCFADVQRD-----GVGVVE 156 (241)
T ss_pred CCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhh-CCeeeeeeecc-----cceeee
Confidence 431111000 000000011123679999999999999999999995 99999999888 489999
Q ss_pred ECCHHHHHHHHH-hCCceeC
Q 024696 223 FAMAESAIAALN-CSGAVLG 241 (264)
Q Consensus 223 f~~~~~A~~Ai~-l~g~~~~ 241 (264)
|-..++..-|+. |+...+.
T Consensus 157 ~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 157 YLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred eeehhhHHHHHHhhcccccc
Confidence 999999999997 7776553
No 33
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.81 E-value=4.7e-18 Score=159.10 Aligned_cols=78 Identities=19% Similarity=0.400 Sum_probs=72.2
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
...++|||+|||+++++++|+++|+.||+|.++++.++.. .++|||||+|.+.++|.+|++ ||+..++|+.|+|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 3457899999999999999999999999999999999874 478999999999999999998 9999999999999886
Q ss_pred C
Q 024696 153 K 153 (264)
Q Consensus 153 ~ 153 (264)
.
T Consensus 282 i 282 (612)
T TIGR01645 282 V 282 (612)
T ss_pred C
Confidence 4
No 34
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.80 E-value=2.1e-18 Score=153.18 Aligned_cols=172 Identities=25% Similarity=0.262 Sum_probs=137.7
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEeecC
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 153 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~s~ 153 (264)
+......|.+++|||++|++||.++|+.++ |+++.+.+..+..+|-|||+|++++++++|++.+...++.+.|.|-.+.
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAG 84 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccC
Confidence 344566799999999999999999999994 8888888887777799999999999999999999999999999998875
Q ss_pred CCCCCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEE-EEEeccC-CCceeEEEEEECCHHHHHH
Q 024696 154 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQR-LRLLGDY-QHSTRIAFVEFAMAESAIA 231 (264)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~-v~i~~~~-~~~~g~afV~f~~~~~A~~ 231 (264)
....... ..+..... ......|-+.+||+.||++||.++|+.. -.|.. +.++.++ +++.|-|||.|++.++|++
T Consensus 85 ~~e~d~~--~~~~g~~s-~~~d~vVRLRGLPfscte~dI~~FFaGL-~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~ 160 (510)
T KOG4211|consen 85 GAEADWV--MRPGGPNS-SANDGVVRLRGLPFSCTEEDIVEFFAGL-EIVPDGILLPMDQRGRPTGEAFVQFESQESAEI 160 (510)
T ss_pred Ccccccc--ccCCCCCC-CCCCceEEecCCCccCcHHHHHHHhcCC-cccccceeeeccCCCCcccceEEEecCHHHHHH
Confidence 4433211 11111111 1355789999999999999999999863 34444 4455666 6899999999999999999
Q ss_pred HHHhCCceeCCeeEEEeec
Q 024696 232 ALNCSGAVLGSLPIRVSPS 250 (264)
Q Consensus 232 Ai~l~g~~~~g~~l~v~~a 250 (264)
|+.-|...++-+-|.|-.|
T Consensus 161 Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 161 ALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred HHHHHHHhhccceEEeehh
Confidence 9998888888888887543
No 35
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.76 E-value=4.1e-17 Score=132.40 Aligned_cols=167 Identities=26% Similarity=0.384 Sum_probs=136.3
Q ss_pred EEEEcCCCCcCCHHHHHH----HhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecCC
Q 024696 80 TVYVSDIDQQVTEEQLAT----LFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 154 (264)
Q Consensus 80 ~v~V~nLp~~~te~~L~~----~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~ 154 (264)
||||.||+..+..++|+. +|++||.|.+|...+.. ..+|.|||.|.+.+.|..|+. |+|..+-|+++++++++.
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~-KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s 89 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTP-KMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKS 89 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCC-CccCceEEEecChhHHHHHHHHhcCCcccCchhheecccC
Confidence 999999999999999888 99999999988777543 346999999999999999998 999999999999999865
Q ss_pred CCCCCCC---CCC---------------------------------CCCccccccCCceEEEeCCCCCCCHHHHHHHhhh
Q 024696 155 AIAPVNP---TFL---------------------------------PRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFES 198 (264)
Q Consensus 155 ~~~~~~~---~~~---------------------------------~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~ 198 (264)
...-... .+. +.......+++..+|+.|+|..++.+.+..+|++
T Consensus 90 ~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf~q 169 (221)
T KOG4206|consen 90 DSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLFEQ 169 (221)
T ss_pred ccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHHhh
Confidence 2110000 000 0000222456789999999999999999999999
Q ss_pred cCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeC-CeeEEEeecC
Q 024696 199 VCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLG-SLPIRVSPSK 251 (264)
Q Consensus 199 ~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~-g~~l~v~~a~ 251 (264)
|.....++++... .+.|||+|.+...|..|.+ +.|..+. ..+++|.+++
T Consensus 170 -f~g~keir~i~~~---~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 170 -FPGFKEIRLIPPR---SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred -CcccceeEeccCC---CceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 5988999887754 2599999999999999998 9999887 8899998875
No 36
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.74 E-value=2.6e-17 Score=128.95 Aligned_cols=81 Identities=22% Similarity=0.340 Sum_probs=75.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
.+++|||+|||..+++++|+++|++ ||.|.++.++.|. ++++|||||+|++.++|++|++ ||+..+.|+.|+|+++
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhc-CCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 4578999999999999999999999 6999999999886 6799999999999999999998 9999999999999999
Q ss_pred CCCCC
Q 024696 251 KTPVR 255 (264)
Q Consensus 251 ~~~~~ 255 (264)
+++..
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 77644
No 37
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.72 E-value=4e-16 Score=136.79 Aligned_cols=175 Identities=22% Similarity=0.247 Sum_probs=141.9
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhh-cCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFL-TCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~-~~G~I~~v~i~~~~~-~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
...+.+||+|||++..+++|+++|. ..|+|+.|.+..|.. +++|+|.|+|+++|.+++|++ ||.+.+.||+|.|+..
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 3456699999999999999999998 789999999999985 789999999999999999999 9999999999999875
Q ss_pred CCCCCCC-----------------------------------CCCCCCCCcc----------------------------
Q 024696 153 KTAIAPV-----------------------------------NPTFLPRSED---------------------------- 169 (264)
Q Consensus 153 ~~~~~~~-----------------------------------~~~~~~~~~~---------------------------- 169 (264)
....... ...+.++..+
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 3310000 0000000000
Q ss_pred --------ccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCceeEEEEEECCHHHHHHHHH-hCCce
Q 024696 170 --------EREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAV 239 (264)
Q Consensus 170 --------~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~-l~g~~ 239 (264)
-..+....+||.||...+....|++.|.- .|.|+.+.+.-|+ +.++|++.++|+++-+|.+|+. +++.-
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgm-AGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g 280 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGM-AGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQG 280 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhcc-ceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCC
Confidence 01234468999999999999999999998 4999999988887 8899999999999999999998 88877
Q ss_pred eCCeeEEEeecC
Q 024696 240 LGSLPIRVSPSK 251 (264)
Q Consensus 240 ~~g~~l~v~~a~ 251 (264)
+..++..+....
T Consensus 281 ~~~~~~~~Rl~~ 292 (608)
T KOG4212|consen 281 LFDRRMTVRLDR 292 (608)
T ss_pred Cccccceeeccc
Confidence 778887777644
No 38
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.68 E-value=5e-16 Score=143.34 Aligned_cols=173 Identities=25% Similarity=0.300 Sum_probs=137.8
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
.......+.|+|||..+..+++..+|..||+|..+.+. ..+ --|+|+|.+..+|..|.. +....+...++++.|+
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp-~~G---~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~a 456 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP-PGG---TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWA 456 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecC-ccc---ceeeeeecCccchHHHHHHhchhhhccCccccccC
Confidence 55667889999999999999999999999999999554 322 269999999999999998 9999999999988886
Q ss_pred CCCCCCCCCCC--------CC-----------------CCcc-----------ccccCCceEEEeCCCCCCCHHHHHHHh
Q 024696 153 KTAIAPVNPTF--------LP-----------------RSED-----------EREMCSRTIYCTNIDKKVTQGDIKLFF 196 (264)
Q Consensus 153 ~~~~~~~~~~~--------~~-----------------~~~~-----------~~~~~~~~l~V~nL~~~~te~~L~~~F 196 (264)
........+.. .. ...+ ......+++||.||++.++.+++...|
T Consensus 457 P~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F 536 (725)
T KOG0110|consen 457 PEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLF 536 (725)
T ss_pred hhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHH
Confidence 44322211100 00 0000 001112339999999999999999999
Q ss_pred hhcCCceEEEEEeccC-C----CceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 024696 197 ESVCGEVQRLRLLGDY-Q----HSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 251 (264)
Q Consensus 197 ~~~~G~V~~v~i~~~~-~----~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~ 251 (264)
.. +|.|..+.|.+.+ + .+.|||||+|.+.++|+.|+. |+|+.+.|+.|.|+++.
T Consensus 537 ~k-~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 537 SK-QGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred Hh-cCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 99 7999999988754 2 266999999999999999998 99999999999999987
No 39
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.68 E-value=1.3e-15 Score=132.54 Aligned_cols=169 Identities=27% Similarity=0.302 Sum_probs=136.5
Q ss_pred CcEEEEcCCC-CcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecCCC
Q 024696 78 RRTVYVSDID-QQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTA 155 (264)
Q Consensus 78 ~~~v~V~nLp-~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~~ 155 (264)
...|-|.||. ..+|.+.|..+|..||.|.+|+|..+++ -.|.|+|.|...|..|++ |+|..+.|++|+|.+|+..
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk---d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~ 373 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK---DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHT 373 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC---cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCc
Confidence 4678889886 4589999999999999999999999877 599999999999999998 9999999999999999864
Q ss_pred CCCCCCCCCCC---------------------CccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCc-eEEEEEeccCC
Q 024696 156 IAPVNPTFLPR---------------------SEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGE-VQRLRLLGDYQ 213 (264)
Q Consensus 156 ~~~~~~~~~~~---------------------~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~-V~~v~i~~~~~ 213 (264)
.........+. ....-.+++.++...|+|..++||+++..|.+. |. |+..+...
T Consensus 374 ~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~-g~~vkafkff~--- 449 (492)
T KOG1190|consen 374 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEP-GGQVKAFKFFQ--- 449 (492)
T ss_pred cccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcC-CceEEeeeecC---
Confidence 33222110000 000113567899999999999999999999996 64 45444432
Q ss_pred CceeEEEEEECCHHHHHHHHH-hCCceeCCe-eEEEeecCCC
Q 024696 214 HSTRIAFVEFAMAESAIAALN-CSGAVLGSL-PIRVSPSKTP 253 (264)
Q Consensus 214 ~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~-~l~v~~a~~~ 253 (264)
+.+.+|.+.+++.|+|..|+- ++++.+++. .++|+|+|..
T Consensus 450 kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks~ 491 (492)
T KOG1190|consen 450 KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKST 491 (492)
T ss_pred CCcceeecccCChhHhhhhccccccccCCCCceEEEEeeccc
Confidence 334599999999999999998 999999865 9999999864
No 40
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.68 E-value=3.4e-16 Score=122.60 Aligned_cols=80 Identities=28% Similarity=0.468 Sum_probs=73.6
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
..+++|||+|||+++||++|+++|++||.|.++.++.|.. .++|||||+|.+.++|+.|++ ||+..+.|++|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 3567899999999999999999999999999999998874 578999999999999999998 9999999999999998
Q ss_pred CCC
Q 024696 153 KTA 155 (264)
Q Consensus 153 ~~~ 155 (264)
...
T Consensus 112 ~~~ 114 (144)
T PLN03134 112 NDR 114 (144)
T ss_pred CcC
Confidence 643
No 41
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.68 E-value=1.3e-16 Score=130.65 Aligned_cols=159 Identities=26% Similarity=0.318 Sum_probs=127.8
Q ss_pred cEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecCCCCC
Q 024696 79 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIA 157 (264)
Q Consensus 79 ~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~~~~ 157 (264)
..+|||+||+.+.+.+|.++|..||.+.++.+. + ||+||+|.+..+|..|+. +|+..+.|-.+.|.++.....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk---~---gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK---N---GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRR 75 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee---c---ccceeccCchhhhhcccchhcCceecceeeeeeccccccc
Confidence 469999999999999999999999999988774 2 699999999999999998 999999998899998864321
Q ss_pred CCCCCCC------CCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHH
Q 024696 158 PVNPTFL------PRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIA 231 (264)
Q Consensus 158 ~~~~~~~------~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~ 231 (264)
....... .............+.|.++...+.+++|.+.|.+ +|++....+ ..+++||+|+..++|..
T Consensus 76 ~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~-~g~~~~~~~------~~~~~~v~Fs~~~da~r 148 (216)
T KOG0106|consen 76 GRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRP-AGEVTYVDA------RRNFAFVEFSEQEDAKR 148 (216)
T ss_pred ccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcc-cCCCchhhh------hccccceeehhhhhhhh
Confidence 1100000 0111111234577899999999999999999999 699966555 23589999999999999
Q ss_pred HHH-hCCceeCCeeEEEeec
Q 024696 232 ALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 232 Ai~-l~g~~~~g~~l~v~~a 250 (264)
|++ ++|..+.|+.|.+...
T Consensus 149 a~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 149 ALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred cchhccchhhcCceeeeccc
Confidence 999 9999999999999543
No 42
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.68 E-value=1.2e-15 Score=123.26 Aligned_cols=164 Identities=20% Similarity=0.258 Sum_probs=121.3
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCC---CceEEEEEecCHHHHHHHHH-hcCCCCC---Ccc
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS---VLRFAFVEFTDEEGARAALS-LAGTMLG---FYP 146 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~---s~G~afV~F~~~~~a~~Ai~-l~~~~~~---g~~ 146 (264)
++..-+||||.+||.++...+|.++|..|-.-+...+....+. -+.+||+.|.+..+|..|++ |||..|. +..
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 4455799999999999999999999998866666555443221 25799999999999999998 9999985 788
Q ss_pred eEEeecCCCCCCCCCCC-----------------CCC---------------------------Ccc-------------
Q 024696 147 VRVLPSKTAIAPVNPTF-----------------LPR---------------------------SED------------- 169 (264)
Q Consensus 147 l~V~~s~~~~~~~~~~~-----------------~~~---------------------------~~~------------- 169 (264)
|+++.++.......+.. ..+ ..+
T Consensus 110 LhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~ 189 (284)
T KOG1457|consen 110 LHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSK 189 (284)
T ss_pred eEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhc
Confidence 88888754211100000 000 000
Q ss_pred ---------------ccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH
Q 024696 170 ---------------EREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN 234 (264)
Q Consensus 170 ---------------~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~ 234 (264)
.......||||.||.++++|++|+.+|+. |-.....+|....|-+ .||++|++.+.|..|+.
T Consensus 190 ~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~-~~gf~~l~~~~~~g~~--vaf~~~~~~~~at~am~ 266 (284)
T KOG1457|consen 190 APSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSR-YPGFHILKIRARGGMP--VAFADFEEIEQATDAMN 266 (284)
T ss_pred CCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHh-CCCceEEEEecCCCcc--eEeecHHHHHHHHHHHH
Confidence 00112358999999999999999999998 6777777775544433 89999999999999998
Q ss_pred -hCCcee
Q 024696 235 -CSGAVL 240 (264)
Q Consensus 235 -l~g~~~ 240 (264)
|.|..+
T Consensus 267 ~lqg~~~ 273 (284)
T KOG1457|consen 267 HLQGNLL 273 (284)
T ss_pred Hhhccee
Confidence 988766
No 43
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=2e-15 Score=135.25 Aligned_cols=160 Identities=20% Similarity=0.277 Sum_probs=120.8
Q ss_pred cccccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC-----CCce---EEEEEecCHHHHHHHHH-hcCC
Q 024696 70 NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-----SVLR---FAFVEFTDEEGARAALS-LAGT 140 (264)
Q Consensus 70 ~~~~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~-----~s~G---~afV~F~~~~~a~~Ai~-l~~~ 140 (264)
...+....+++||||+||++++|++|...|..||.+. |.+....+ .++| |+|+.|+++.++...+. +..
T Consensus 251 ~~~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~- 328 (520)
T KOG0129|consen 251 RGYRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE- 328 (520)
T ss_pred CCCCccccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-
Confidence 3344567789999999999999999999999999966 77875332 1466 99999999999998886 322
Q ss_pred CCCCcceEEeecCCCCCCC----------CCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEec
Q 024696 141 MLGFYPVRVLPSKTAIAPV----------NPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLG 210 (264)
Q Consensus 141 ~~~g~~l~V~~s~~~~~~~----------~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~ 210 (264)
....+.++.+....... +..+. ....+.-.+.+|||||+||..++.++|..+|++.||.|.++-|-.
T Consensus 329 --~~~~~yf~vss~~~k~k~VQIrPW~laDs~fv-~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDt 405 (520)
T KOG0129|consen 329 --GEGNYYFKVSSPTIKDKEVQIRPWVLADSDFV-LDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDT 405 (520)
T ss_pred --cccceEEEEecCcccccceeEEeeEeccchhh-hccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEecc
Confidence 33333333332211111 01111 112333456699999999999999999999998899999999999
Q ss_pred cC--CCceeEEEEEECCHHHHHHHHH
Q 024696 211 DY--QHSTRIAFVEFAMAESAIAALN 234 (264)
Q Consensus 211 ~~--~~~~g~afV~f~~~~~A~~Ai~ 234 (264)
|+ +-++|.|-|+|++..+..+||+
T Consensus 406 D~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 406 DPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred CcccCCCCCcceeeecccHHHHHHHh
Confidence 95 4599999999999999999996
No 44
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.65 E-value=1.6e-14 Score=123.55 Aligned_cols=178 Identities=18% Similarity=0.260 Sum_probs=137.3
Q ss_pred cccccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeE--------EEEecCCC-CCceEEEEEecCHHHHHHHHH-hcC
Q 024696 70 NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVD--------CRICGDPN-SVLRFAFVEFTDEEGARAALS-LAG 139 (264)
Q Consensus 70 ~~~~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~--------v~i~~~~~-~s~G~afV~F~~~~~a~~Ai~-l~~ 139 (264)
+...++.....|||.|||.++|-+++.++|+.||-|.. |++.++.+ +-+|=|.+.|--.+++..|++ |++
T Consensus 126 ~~~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe 205 (382)
T KOG1548|consen 126 WFNPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDE 205 (382)
T ss_pred ccCcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCc
Confidence 33344555667999999999999999999999998753 78888775 458999999999999999999 999
Q ss_pred CCCCCcceEEeecCCCCCCCCCC-----------------------CCCCC-ccccccCCceEEEeCCCC----CCC---
Q 024696 140 TMLGFYPVRVLPSKTAIAPVNPT-----------------------FLPRS-EDEREMCSRTIYCTNIDK----KVT--- 188 (264)
Q Consensus 140 ~~~~g~~l~V~~s~~~~~~~~~~-----------------------~~~~~-~~~~~~~~~~l~V~nL~~----~~t--- 188 (264)
..+.|+.|+|+.++-........ ..+.. ...+....++|.+.|+-. ..+
T Consensus 206 ~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l 285 (382)
T KOG1548|consen 206 DELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDL 285 (382)
T ss_pred ccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHH
Confidence 99999999999985422111000 01111 122234568999999843 233
Q ss_pred ----HHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 189 ----QGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 189 ----e~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
.++|++-+++ ||.|..|.+.-. ++.|.+.|.|.+.++|..|++ |+|..|.||.|..+..
T Consensus 286 ~~dlkedl~eec~K-~G~v~~vvv~d~--hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~ 349 (382)
T KOG1548|consen 286 LNDLKEDLTEECEK-FGQVRKVVVYDR--HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIW 349 (382)
T ss_pred HHHHHHHHHHHHHH-hCCcceEEEecc--CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEe
Confidence 3667777888 699999988643 466899999999999999999 9999999999987653
No 45
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.64 E-value=1.5e-15 Score=136.71 Aligned_cols=166 Identities=20% Similarity=0.273 Sum_probs=127.2
Q ss_pred EEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecCCCCC
Q 024696 81 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIA 157 (264)
Q Consensus 81 v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~--~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~~~~ 157 (264)
+|||||.+++++++|+..|+.||.|+.|.+..|. +.++||+||+|.+.++|.+|++ |||..+-|+.|+|..-.....
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecc
Confidence 9999999999999999999999999999999995 5679999999999999999987 999999999999865322111
Q ss_pred CCCC-----CC-------C------------------C----------------------------CCccccc-------
Q 024696 158 PVNP-----TF-------L------------------P----------------------------RSEDERE------- 172 (264)
Q Consensus 158 ~~~~-----~~-------~------------------~----------------------------~~~~~~~------- 172 (264)
.... ++ . . .......
T Consensus 361 ~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~ 440 (549)
T KOG0147|consen 361 TKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFD 440 (549)
T ss_pred cccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccC
Confidence 0000 00 0 0 0000001
Q ss_pred cCCceEEEeCCCCC--CC--------HHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeC
Q 024696 173 MCSRTIYCTNIDKK--VT--------QGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLG 241 (264)
Q Consensus 173 ~~~~~l~V~nL~~~--~t--------e~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~ 241 (264)
.++.++.+.|+-.. .| .+|+.+-+.+ ||+|.+|.+.+.. -|+.||.|.+.++|..|+. |||..|.
T Consensus 441 i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k-~g~v~hi~vd~ns---~g~VYvrc~s~~~A~~a~~alhgrWF~ 516 (549)
T KOG0147|consen 441 IPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGK-HGKVCHIFVDKNS---AGCVYVRCPSAEAAGTAVKALHGRWFA 516 (549)
T ss_pred CccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHh-cCCeeEEEEccCC---CceEEEecCcHHHHHHHHHHHhhhhhc
Confidence 23455666666322 11 3677788888 6999999885543 2799999999999999998 9999999
Q ss_pred CeeEEEeec
Q 024696 242 SLPIRVSPS 250 (264)
Q Consensus 242 g~~l~v~~a 250 (264)
|+.|...|-
T Consensus 517 gr~Ita~~~ 525 (549)
T KOG0147|consen 517 GRMITAKYL 525 (549)
T ss_pred cceeEEEEe
Confidence 999999884
No 46
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.64 E-value=2e-15 Score=103.16 Aligned_cols=68 Identities=29% Similarity=0.530 Sum_probs=64.4
Q ss_pred EEEeCCCCCCCHHHHHHHhhhcCCceEEEEEecc-CCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEE
Q 024696 178 IYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD-YQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIR 246 (264)
Q Consensus 178 l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~-~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~ 246 (264)
|||+|||+++++++|+++|++ ||.|..+.+..+ .+..+++|||+|++.++|.+|++ ++|..++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~-~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQ-FGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHT-TSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHH-hhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999 799999999985 47899999999999999999999 999999999986
No 47
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.62 E-value=1.5e-15 Score=103.78 Aligned_cols=68 Identities=32% Similarity=0.549 Sum_probs=63.6
Q ss_pred EEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecC-CCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceE
Q 024696 81 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD-PNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVR 148 (264)
Q Consensus 81 v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~-~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~ 148 (264)
|||+|||+++|+++|+++|++||.|..+.+..+ .+.++|+|||+|.+.++|++|++ ++|..++|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999996 44668999999999999999998 999999999885
No 48
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.60 E-value=5.6e-15 Score=131.46 Aligned_cols=83 Identities=18% Similarity=0.338 Sum_probs=76.6
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEe
Q 024696 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 248 (264)
Q Consensus 172 ~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~ 248 (264)
....++|||+|||.++|+++|+++|++ ||.|++|+|++|. ++++|||||+|.+.++|.+|++ |||..+.+++|+|.
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~-~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRT-IGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 446699999999999999999999999 6999999999885 6799999999999999999998 99999999999999
Q ss_pred ecCCCCC
Q 024696 249 PSKTPVR 255 (264)
Q Consensus 249 ~a~~~~~ 255 (264)
|+++...
T Consensus 183 ~a~p~~~ 189 (346)
T TIGR01659 183 YARPGGE 189 (346)
T ss_pred ccccccc
Confidence 9987643
No 49
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.59 E-value=1.3e-14 Score=121.96 Aligned_cols=78 Identities=27% Similarity=0.405 Sum_probs=72.2
Q ss_pred CCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEeecCCC
Q 024696 77 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTA 155 (264)
Q Consensus 77 ~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~s~~~ 155 (264)
..++|||+|||+.+|+++|+++|+.||.|.+|.+..++. ++|||||+|.++++|..|+.|+|..+.|++|.|.++...
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~-~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE-RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 357999999999999999999999999999999998864 459999999999999999999999999999999998643
No 50
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.57 E-value=6.9e-14 Score=120.72 Aligned_cols=167 Identities=22% Similarity=0.231 Sum_probs=136.2
Q ss_pred cccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH---hcCCCCCCcceE
Q 024696 72 QQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS---LAGTMLGFYPVR 148 (264)
Q Consensus 72 ~~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~---l~~~~~~g~~l~ 148 (264)
.-....+..|.|++|-..++|.+|.+.++.||+|..+..+..+ ..|.|+|++.+.|+.++. -+...+.|+.-.
T Consensus 25 phk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~----r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al 100 (494)
T KOG1456|consen 25 PHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK----RQALVEFEDIEGAKNCVNFAADNQIYIAGQQAL 100 (494)
T ss_pred CCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc----ceeeeeeccccchhhheehhccCcccccCchhh
Confidence 3345667889999999999999999999999999988887765 499999999999999986 355668899888
Q ss_pred EeecCCCCCCCCCCCCCCCccccccCCceEEEeCCCC--CCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCH
Q 024696 149 VLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDK--KVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMA 226 (264)
Q Consensus 149 V~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~--~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~ 226 (264)
+++|..... .+..++...++..|.+.=|++ .+|.+-|..++.. .|+|.+|.|++..+ -.|+|+|++.
T Consensus 101 ~NyStsq~i-------~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp-~GkVlRIvIfkkng---VQAmVEFdsv 169 (494)
T KOG1456|consen 101 FNYSTSQCI-------ERPGDESATPNKVLLFTILNPQYPITVDVLYTICNP-QGKVLRIVIFKKNG---VQAMVEFDSV 169 (494)
T ss_pred cccchhhhh-------ccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCC-CCceEEEEEEeccc---eeeEEeechh
Confidence 888843322 122233344556666666654 5999999999999 59999999988753 3699999999
Q ss_pred HHHHHHHH-hCCcee--CCeeEEEeecCCC
Q 024696 227 ESAIAALN-CSGAVL--GSLPIRVSPSKTP 253 (264)
Q Consensus 227 ~~A~~Ai~-l~g~~~--~g~~l~v~~a~~~ 253 (264)
+.|++|.. |||..| +.++|+|+||||.
T Consensus 170 ~~AqrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 170 EVAQRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred HHHHHHHhhcccccccccceeEEEEecCcc
Confidence 99999998 999988 4579999999986
No 51
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.57 E-value=2.5e-14 Score=120.18 Aligned_cols=77 Identities=29% Similarity=0.478 Sum_probs=71.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecCCC
Q 024696 175 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKTP 253 (264)
Q Consensus 175 ~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~a~~~ 253 (264)
.++|||+|||+.+++++|+++|+. ||.|++|.|+.+.. .+|||||+|.+.++|..|+.|||..+.|+.|+|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~-~G~I~~V~I~~d~~-~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSF-SGDIEYVEMQSENE-RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeecCC-CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccCC
Confidence 489999999999999999999998 79999999998853 578999999999999999999999999999999998743
No 52
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.57 E-value=5.5e-14 Score=119.92 Aligned_cols=156 Identities=28% Similarity=0.361 Sum_probs=117.4
Q ss_pred CcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecCC
Q 024696 78 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 154 (264)
Q Consensus 78 ~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~--~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~ 154 (264)
..+|||+|||+++++++|+++|..||.|..+.+..++ +.++|+|||+|.+.++|..|++ +++..+.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5899999999999999999999999999999999986 4679999999999999999998 999999999999999642
Q ss_pred --CCCCCCCC--------CCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCC--CceeEEEEE
Q 024696 155 --AIAPVNPT--------FLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVE 222 (264)
Q Consensus 155 --~~~~~~~~--------~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~--~~~g~afV~ 222 (264)
........ ...............+++++++..++..++...|.. +|.+....+..... ......++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKS-RGDIVRASLPPSKDGKIPKSRSFVG 273 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccc-cccceeeeccCCCCCcccccccccc
Confidence 11111100 001111222445688999999999999999999998 69997776665442 233344444
Q ss_pred ECCHHHHHHHHH
Q 024696 223 FAMAESAIAALN 234 (264)
Q Consensus 223 f~~~~~A~~Ai~ 234 (264)
+.....+..+..
T Consensus 274 ~~~~~~~~~~~~ 285 (306)
T COG0724 274 NEASKDALESNS 285 (306)
T ss_pred hhHHHhhhhhhc
Confidence 444444444444
No 53
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.57 E-value=1e-13 Score=120.86 Aligned_cols=171 Identities=23% Similarity=0.286 Sum_probs=132.2
Q ss_pred CcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCC--CCcceEEeecCC
Q 024696 78 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTML--GFYPVRVLPSKT 154 (264)
Q Consensus 78 ~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~--~g~~l~V~~s~~ 154 (264)
--.++|+++-+.+|-+-|..+|+.||.|..|.-....++ -.|.|+|.+.+.|..|.. |+|..+ +.+.|++.+|+-
T Consensus 150 vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn~--FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Skl 227 (492)
T KOG1190|consen 150 VLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNNG--FQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKL 227 (492)
T ss_pred eEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEecccc--hhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhc
Confidence 345899999999999999999999999987655544332 489999999999999987 998875 356889888753
Q ss_pred CCCC-----------CCCC-----------------------------CCCCC--------ccc-cccCCceEEEeCCCC
Q 024696 155 AIAP-----------VNPT-----------------------------FLPRS--------EDE-REMCSRTIYCTNIDK 185 (264)
Q Consensus 155 ~~~~-----------~~~~-----------------------------~~~~~--------~~~-~~~~~~~l~V~nL~~ 185 (264)
...- .++. ..+.. ... ....+..|.|.||.+
T Consensus 228 t~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~ 307 (492)
T KOG1190|consen 228 TDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNE 307 (492)
T ss_pred ccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCch
Confidence 1000 0000 00000 000 011257889999987
Q ss_pred C-CCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecCCCC
Q 024696 186 K-VTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTPV 254 (264)
Q Consensus 186 ~-~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~~~~ 254 (264)
. +|.+.|.-+|.- ||+|.+|+|...++ .-|.|+|.|...|+.|++ |+|+.+.|++|+|.++|-..
T Consensus 308 ~~VT~d~LftlFgv-YGdVqRVkil~nkk---d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 308 EAVTPDVLFTLFGV-YGDVQRVKILYNKK---DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred hccchhHHHHHHhh-hcceEEEEeeecCC---cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 6 999999999997 89999999998753 479999999999999999 99999999999999998653
No 54
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=1.5e-13 Score=118.38 Aligned_cols=206 Identities=21% Similarity=0.321 Sum_probs=147.4
Q ss_pred HHHHhhhcccccccCCCCCCccccccc-----cccccccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC
Q 024696 41 IKVLCLFNTAFQKRNGYSQGKRRMNCR-----TSNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN 115 (264)
Q Consensus 41 ~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~ 115 (264)
.-+|..-||+.+..+|..-++. .|.. +..-+.+...-..|||..+.++.+|+||+..|+.||+|..|.+-++..
T Consensus 169 qLAlEqMNg~mlGGRNiKVgrP-sNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt 247 (544)
T KOG0124|consen 169 QLALEQMNGQMLGGRNIKVGRP-SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPT 247 (544)
T ss_pred HHHHHHhccccccCccccccCC-CCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCC
Confidence 5566777887765444433211 1111 112223344556799999999999999999999999999999999875
Q ss_pred --CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecCCCCCC----------------------------------
Q 024696 116 --SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIAP---------------------------------- 158 (264)
Q Consensus 116 --~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~~~~~---------------------------------- 158 (264)
+++||+||+|.+..+...|+. ||=..++|+.|+|..+.+....
T Consensus 248 ~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~ 327 (544)
T KOG0124|consen 248 GRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGS 327 (544)
T ss_pred CCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccC
Confidence 579999999999999999998 9999999999999875330000
Q ss_pred -------------------------------------------CCCCC--------------------------------
Q 024696 159 -------------------------------------------VNPTF-------------------------------- 163 (264)
Q Consensus 159 -------------------------------------------~~~~~-------------------------------- 163 (264)
..|..
T Consensus 328 avlg~~G~~~~vSpA~~aa~p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~e 407 (544)
T KOG0124|consen 328 AVLGTVGAPGLVSPAPRAAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEE 407 (544)
T ss_pred CcccccCCccccCccccccCCCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHh
Confidence 00000
Q ss_pred --CCCCccc-------------------------cccCCceEEEeCC--CCCCC---HHHHHHHhhhcCCceEEEEEecc
Q 024696 164 --LPRSEDE-------------------------REMCSRTIYCTNI--DKKVT---QGDIKLFFESVCGEVQRLRLLGD 211 (264)
Q Consensus 164 --~~~~~~~-------------------------~~~~~~~l~V~nL--~~~~t---e~~L~~~F~~~~G~V~~v~i~~~ 211 (264)
.+..+.. +...++.+.++|+ |.+++ +.++++-+.+ ||.|.+|.|...
T Consensus 408 elqpkl~~~~~L~~QE~msI~G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgK-fG~V~rViI~ne 486 (544)
T KOG0124|consen 408 ELQPKLERPEMLSEQEHMSISGSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGK-FGAVNRVIIYNE 486 (544)
T ss_pred hhcccccCHHHhhhhhCccccCccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhc-ccceeEEEEEec
Confidence 0000000 0234567788887 44555 4788999999 699999999886
Q ss_pred CCC------ceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEe
Q 024696 212 YQH------STRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 248 (264)
Q Consensus 212 ~~~------~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~ 248 (264)
+.. -.-.-||+|+...++.+|.+ |+|..|+|+++.-+
T Consensus 487 kq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFgGr~VvAE 530 (544)
T KOG0124|consen 487 KQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFGGRKVVAE 530 (544)
T ss_pred ccccccchhhhheeeeeechhhHHHHHHHhhccceecCceeehh
Confidence 521 12368999999999999999 99999999998754
No 55
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.55 E-value=4.7e-14 Score=96.70 Aligned_cols=68 Identities=32% Similarity=0.563 Sum_probs=61.8
Q ss_pred EEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEE
Q 024696 178 IYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIR 246 (264)
Q Consensus 178 l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~ 246 (264)
|||+|||+.+++++|+++|+. ||.|..+.+..++ +.++|+|||+|.+.++|.+|++ ++|..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~-~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSR-FGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTT-SSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHh-cCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999 6999999999875 6789999999999999999999 888999999885
No 56
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.54 E-value=4.4e-14 Score=132.33 Aligned_cols=122 Identities=20% Similarity=0.191 Sum_probs=97.2
Q ss_pred CCcEEEEcCCCCcCCHHHHHHHhhcC--CCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecC
Q 024696 77 IRRTVYVSDIDQQVTEEQLATLFLTC--GQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 153 (264)
Q Consensus 77 ~~~~v~V~nLp~~~te~~L~~~F~~~--G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~ 153 (264)
..++|||+|||+++|+++|+++|+.| |.|++|.+++ +||||+|.+.++|.+|++ ||+..|.|+.|+|.+++
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 35789999999999999999999999 9999998763 599999999999999998 99999999999999986
Q ss_pred CCCCCCCCC---------C-----CCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEE
Q 024696 154 TAIAPVNPT---------F-----LPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQR 205 (264)
Q Consensus 154 ~~~~~~~~~---------~-----~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~ 205 (264)
......... . .........+...+++++|++++.+++-+.++|.. +|.|..
T Consensus 306 p~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~-~g~~~~ 370 (578)
T TIGR01648 306 PVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRM-PGPIRG 370 (578)
T ss_pred CCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhcccc-CccccC
Confidence 532210000 0 00011112346789999999999999999999998 687653
No 57
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=2.7e-14 Score=116.96 Aligned_cols=79 Identities=28% Similarity=0.377 Sum_probs=75.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
...+|-|.||+.+++|++|+++|.+ ||.|.++.+.+|+ |.++|||||.|.+.++|++|++ |||+-+.+--|+|+|+
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~-fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRP-FGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhc-cCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 4588999999999999999999999 5999999999987 7899999999999999999999 9999999999999999
Q ss_pred CCC
Q 024696 251 KTP 253 (264)
Q Consensus 251 ~~~ 253 (264)
+|.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 996
No 58
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=2.8e-14 Score=121.30 Aligned_cols=82 Identities=21% Similarity=0.291 Sum_probs=75.7
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 172 ~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
....+.|+|+|+|+...|.||+..|.+ ||.|.+|.|+.+...+||||||+|++.+||.+|.+ |||..+.||+|.|..+
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~k-fG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEK-FGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHh-hCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 345589999999999999999999999 69999999999876799999999999999999998 9999999999999998
Q ss_pred CCCC
Q 024696 251 KTPV 254 (264)
Q Consensus 251 ~~~~ 254 (264)
.+..
T Consensus 172 TarV 175 (376)
T KOG0125|consen 172 TARV 175 (376)
T ss_pred chhh
Confidence 7653
No 59
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.53 E-value=3.2e-14 Score=120.96 Aligned_cols=80 Identities=23% Similarity=0.297 Sum_probs=75.4
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecCC
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 154 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~ 154 (264)
...+.|+|+|||+...|.||+.+|.+||.|.+|.|+.+...||||+||+|++.++|++|.+ |+|..+.||+|.|+.+..
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 4467799999999999999999999999999999999999999999999999999999998 999999999999999864
Q ss_pred C
Q 024696 155 A 155 (264)
Q Consensus 155 ~ 155 (264)
.
T Consensus 174 r 174 (376)
T KOG0125|consen 174 R 174 (376)
T ss_pred h
Confidence 3
No 60
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=2.3e-14 Score=106.31 Aligned_cols=78 Identities=32% Similarity=0.419 Sum_probs=72.8
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEee
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 151 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~ 151 (264)
...+++||||||+..++|++|.++|+.+|+|..|.+--|+. +..|||||+|.+.++|..|+. +++..+..++|++.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 45789999999999999999999999999999998877775 578999999999999999999 999999999999999
Q ss_pred c
Q 024696 152 S 152 (264)
Q Consensus 152 s 152 (264)
.
T Consensus 113 D 113 (153)
T KOG0121|consen 113 D 113 (153)
T ss_pred c
Confidence 6
No 61
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.52 E-value=4.2e-14 Score=96.95 Aligned_cols=68 Identities=37% Similarity=0.568 Sum_probs=60.6
Q ss_pred EEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceE
Q 024696 81 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVR 148 (264)
Q Consensus 81 v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~-~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~ 148 (264)
|||+|||+++++++|+++|+.||.|..+.+..++. .++|+|||+|.+.++|.+|++ +++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999998764 458999999999999999999 777999999874
No 62
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=3.3e-14 Score=111.05 Aligned_cols=76 Identities=29% Similarity=0.416 Sum_probs=70.9
Q ss_pred CCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecCCC
Q 024696 77 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTA 155 (264)
Q Consensus 77 ~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~~ 155 (264)
..++||||||+..+++.||+..|..||++..|.+-..+. |||||+|++..+|..|+. |+|..|.|..|+|+.++..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP---GfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP---GFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC---CceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 367899999999999999999999999999999988766 899999999999999998 9999999999999998644
No 63
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.52 E-value=1.1e-12 Score=113.36 Aligned_cols=174 Identities=17% Similarity=0.134 Sum_probs=136.9
Q ss_pred CCCcEEEEcCCCCc-CCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecC
Q 024696 76 VIRRTVYVSDIDQQ-VTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 153 (264)
Q Consensus 76 ~~~~~v~V~nLp~~-~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~ 153 (264)
.+.+.++|.+|... ++.+.|.++|..||.|++|++++.+. |.|.|++.|..++++|+. ||+..+.|.+|.|..|+
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~---gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~Sk 361 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP---GTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSK 361 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc---ceeEEEcCcHHHHHHHHHHhccCccccceEEEeecc
Confidence 45678999999855 67788999999999999999998776 899999999999999998 99999999999999987
Q ss_pred CCCCCCCCCCC--------------------CCCc---cccccCCceEEEeCCCCCCCHHHHHHHhhhcCC-ceEEEEEe
Q 024696 154 TAIAPVNPTFL--------------------PRSE---DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLL 209 (264)
Q Consensus 154 ~~~~~~~~~~~--------------------~~~~---~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G-~V~~v~i~ 209 (264)
.........+. .... ..-..++++|..-|-|..+||+.|.++|... + .-.+++++
T Consensus 362 Q~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek-~v~~~svkvF 440 (494)
T KOG1456|consen 362 QNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEK-DVPPTSVKVF 440 (494)
T ss_pred ccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhc-CCCcceEEee
Confidence 64332211110 0000 0114678999999999999999999999984 5 34667777
Q ss_pred ccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCe------eEEEeecCCC
Q 024696 210 GDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSL------PIRVSPSKTP 253 (264)
Q Consensus 210 ~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~------~l~v~~a~~~ 253 (264)
..+......+.++|++.++|..|+. +|...+.+. .+++.|+.++
T Consensus 441 p~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 441 PLKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSK 491 (494)
T ss_pred cccccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecccc
Confidence 6554344589999999999999998 898888653 5666676554
No 64
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=1.6e-13 Score=124.86 Aligned_cols=177 Identities=21% Similarity=0.265 Sum_probs=133.5
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEee
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 151 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~ 151 (264)
.....+++|++||...++.++.|+...||++....++.+.. .++||||.+|.+..-...|++ +||+.++++.+.|+.
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 44567799999999999999999999999999999999876 579999999999999999999 999999999999998
Q ss_pred cCCCCCCCCCCCC---------CCC-ccccccCCceEEEeCCCC--C-CCH-------HHHHHHhhhcCCceEEEEEecc
Q 024696 152 SKTAIAPVNPTFL---------PRS-EDEREMCSRTIYCTNIDK--K-VTQ-------GDIKLFFESVCGEVQRLRLLGD 211 (264)
Q Consensus 152 s~~~~~~~~~~~~---------~~~-~~~~~~~~~~l~V~nL~~--~-~te-------~~L~~~F~~~~G~V~~v~i~~~ 211 (264)
+-......+.... +.. ......+...+...|+=. + .++ |+++.-+.+ ||.|..|.|+++
T Consensus 366 A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k-~g~v~~v~ipr~ 444 (500)
T KOG0120|consen 366 AIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAK-FGAVRSVEIPRP 444 (500)
T ss_pred hhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcc-cCceeEEecCCC
Confidence 7443222211111 000 011122333444444311 1 233 334445556 799999999987
Q ss_pred -C----CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 024696 212 -Y----QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKT 252 (264)
Q Consensus 212 -~----~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~~ 252 (264)
. .-..|..||+|.+.+++++|.+ |+|..|.|+++..+|=.+
T Consensus 445 ~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 445 YPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred CCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 3 2367899999999999999998 999999999999998543
No 65
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.49 E-value=2.6e-13 Score=112.46 Aligned_cols=77 Identities=21% Similarity=0.252 Sum_probs=70.9
Q ss_pred CCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEeecCC
Q 024696 77 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 154 (264)
Q Consensus 77 ~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~s~~ 154 (264)
...+|+|+||++.+|+++|+++|+.||+|.+|++++|.. .+|+|||+|+++++|..|+.|+|..|.+++|.|.+...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e-t~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE-YACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC-cceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 347899999999999999999999999999999999854 44899999999999999999999999999999998654
No 66
>PLN03213 repressor of silencing 3; Provisional
Probab=99.49 E-value=1.2e-13 Score=123.20 Aligned_cols=78 Identities=15% Similarity=0.272 Sum_probs=72.2
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCH--HHHHHHHH-hCCceeCCeeEEEee
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMA--ESAIAALN-CSGAVLGSLPIRVSP 249 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~--~~A~~Ai~-l~g~~~~g~~l~v~~ 249 (264)
....+||||||++.++++||+..|.+ ||.|.+|.|++..| ||||||+|.+. .++.+|++ |||..|.|+.|+|..
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSe-FGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSP-MGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 35589999999999999999999999 69999999997766 99999999987 78999999 999999999999999
Q ss_pred cCCC
Q 024696 250 SKTP 253 (264)
Q Consensus 250 a~~~ 253 (264)
|+|.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 9875
No 67
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=1.5e-13 Score=112.68 Aligned_cols=81 Identities=27% Similarity=0.375 Sum_probs=75.3
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEe
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 150 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~--s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~ 150 (264)
.-.+..+|.|.|||.+++|++|+++|..||.|.++.+.+|+.+ ++|||||.|.+.++|.+||+ |||.-+.+--|+|.
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 3347889999999999999999999999999999999999975 69999999999999999999 99999999999999
Q ss_pred ecCC
Q 024696 151 PSKT 154 (264)
Q Consensus 151 ~s~~ 154 (264)
|+++
T Consensus 265 wskP 268 (270)
T KOG0122|consen 265 WSKP 268 (270)
T ss_pred ecCC
Confidence 9863
No 68
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=1.3e-13 Score=112.63 Aligned_cols=81 Identities=20% Similarity=0.316 Sum_probs=72.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecCCC
Q 024696 176 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKTP 253 (264)
Q Consensus 176 ~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~a~~~ 253 (264)
++||||||++.+..|+|+++|++ ||+|++..++.|+ +++||||||+|.|.++|.+|++-.+-.|.||+-.+..|--.
T Consensus 13 TKifVggL~w~T~~~~l~~yFeq-fGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~lg 91 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQ-FGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASLG 91 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHH-hCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhhc
Confidence 78999999999999999999999 5999999999987 78999999999999999999985667889999999887664
Q ss_pred CCCC
Q 024696 254 VRPR 257 (264)
Q Consensus 254 ~~~~ 257 (264)
.++|
T Consensus 92 ~~pR 95 (247)
T KOG0149|consen 92 GKPR 95 (247)
T ss_pred CccC
Confidence 3433
No 69
>smart00362 RRM_2 RNA recognition motif.
Probab=99.47 E-value=4.4e-13 Score=90.92 Aligned_cols=71 Identities=34% Similarity=0.571 Sum_probs=66.2
Q ss_pred eEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEe
Q 024696 177 TIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 248 (264)
Q Consensus 177 ~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~ 248 (264)
+|+|+|||..+++++|+++|++ ||.|..+.+..+++.++|+|||+|.+.++|.+|++ ++|..+.|++++|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~-~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSK-FGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHh-cCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999999999999999999 69999999988777788999999999999999998 99999999999874
No 70
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=1.1e-13 Score=112.93 Aligned_cols=79 Identities=19% Similarity=0.276 Sum_probs=69.9
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEeecC
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 153 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~s~ 153 (264)
..-.+||||||+|.+..++|+++|++||+|.+..++.|+. +||||+||+|+|.++|.+|.+-.+-.|.||+.-++.+.
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLAS 89 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhh
Confidence 3456799999999999999999999999999999999986 58999999999999999999844557899988888764
Q ss_pred C
Q 024696 154 T 154 (264)
Q Consensus 154 ~ 154 (264)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 4
No 71
>smart00362 RRM_2 RNA recognition motif.
Probab=99.47 E-value=3.5e-13 Score=91.46 Aligned_cols=71 Identities=42% Similarity=0.617 Sum_probs=65.6
Q ss_pred EEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEe
Q 024696 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 150 (264)
Q Consensus 80 ~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~ 150 (264)
+|+|+|||..+++++|+++|+.||+|..+.+..+.+.++|+|||+|.+.++|++|++ +++..+.|+++.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 489999999999999999999999999999998876667999999999999999998 99999999998773
No 72
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=2.5e-13 Score=106.14 Aligned_cols=78 Identities=23% Similarity=0.333 Sum_probs=71.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKT 252 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~~ 252 (264)
..++||||||+..+++.||...|.. ||.+..|.|-..+ -|||||+|++..+|..|+. |+|..|+|..|+|+.++-
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~-yG~lrsvWvArnP---PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSK-YGPLRSVWVARNP---PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHh-cCcceeEEEeecC---CCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 3589999999999999999999998 7999999997754 3699999999999999998 999999999999999876
Q ss_pred CCC
Q 024696 253 PVR 255 (264)
Q Consensus 253 ~~~ 255 (264)
..+
T Consensus 85 ~~r 87 (195)
T KOG0107|consen 85 RPR 87 (195)
T ss_pred Ccc
Confidence 644
No 73
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=6.9e-14 Score=112.92 Aligned_cols=87 Identities=29% Similarity=0.426 Sum_probs=79.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 024696 175 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 251 (264)
Q Consensus 175 ~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~ 251 (264)
.++||||+|-..++|.-|...|-+ ||.|.+|.++.|. ++.||||||+|.-.++|..|++ ||+.++.|++|+|.+|+
T Consensus 10 KrtlYVGGladeVtekvLhaAFIP-FGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIP-FGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred ceeEEeccchHHHHHHHHHhcccc-ccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 489999999999999999999999 5999999999986 6899999999999999999998 99999999999999999
Q ss_pred CCCCCCCCCCC
Q 024696 252 TPVRPRAPRPP 262 (264)
Q Consensus 252 ~~~~~~~~r~~ 262 (264)
|..-+..+-.|
T Consensus 89 P~kikegsqkP 99 (298)
T KOG0111|consen 89 PEKIKEGSQKP 99 (298)
T ss_pred CccccCCCCCC
Confidence 98766554433
No 74
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.45 E-value=8.3e-13 Score=109.43 Aligned_cols=76 Identities=24% Similarity=0.323 Sum_probs=70.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecC
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSK 251 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~a~ 251 (264)
.+.+|||+||++.+|+++|+++|+. ||+|.+|+|.+| +..+++|||+|.+.++|..|+.|+|..|.+++|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~-~G~I~~V~I~~D-~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSH-CGAIEHVEIIRS-GEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHh-cCCeEEEEEecC-CCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 4589999999999999999999997 799999999998 445689999999999999999999999999999999864
No 75
>PLN03213 repressor of silencing 3; Provisional
Probab=99.42 E-value=6.5e-13 Score=118.47 Aligned_cols=77 Identities=17% Similarity=0.233 Sum_probs=70.0
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCH--HHHHHHHH-hcCCCCCCcceEEeec
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDE--EGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~--~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
...-+||||||++++++++|++.|..||.|.+|.|++..+ +|||||+|.+. .++.+|++ |||..+.|+.|+|+.+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 3456799999999999999999999999999999995544 89999999987 78999998 9999999999999998
Q ss_pred CC
Q 024696 153 KT 154 (264)
Q Consensus 153 ~~ 154 (264)
+.
T Consensus 86 KP 87 (759)
T PLN03213 86 KE 87 (759)
T ss_pred cH
Confidence 65
No 76
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.42 E-value=4.6e-13 Score=107.22 Aligned_cols=81 Identities=26% Similarity=0.357 Sum_probs=75.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
+..+|.|-||-+.++.++|+.+|++ ||.|-+|.|+.|. ..++|||||.|.+..+|+.|++ |+|..+.|+.|.|+.|
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFek-YG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEK-YGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHH-hCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 4478999999999999999999999 7999999999997 6799999999999999999999 9999999999999998
Q ss_pred CCCCC
Q 024696 251 KTPVR 255 (264)
Q Consensus 251 ~~~~~ 255 (264)
+-...
T Consensus 91 rygr~ 95 (256)
T KOG4207|consen 91 RYGRP 95 (256)
T ss_pred hcCCC
Confidence 76543
No 77
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=7.5e-13 Score=99.19 Aligned_cols=79 Identities=27% Similarity=0.325 Sum_probs=72.6
Q ss_pred cccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEE
Q 024696 171 REMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRV 247 (264)
Q Consensus 171 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v 247 (264)
+...+..|||.++++..+|++|.+.|.. ||+|+.+.+--|. |-.+|||+|+|++.++|+.|++ +||..+.|++|.|
T Consensus 68 rSVEGwIi~VtgvHeEatEedi~d~F~d-yGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 68 RSVEGWIIFVTGVHEEATEEDIHDKFAD-YGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred cceeeEEEEEeccCcchhHHHHHHHHhh-cccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 3445689999999999999999999999 7999999887765 6689999999999999999999 9999999999999
Q ss_pred eec
Q 024696 248 SPS 250 (264)
Q Consensus 248 ~~a 250 (264)
.|+
T Consensus 147 Dw~ 149 (170)
T KOG0130|consen 147 DWC 149 (170)
T ss_pred EEE
Confidence 997
No 78
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=5.9e-14 Score=110.18 Aligned_cols=79 Identities=28% Similarity=0.373 Sum_probs=73.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
.+.-|||||||+.+||.||.-+|++ ||+|..|.+++|+ |+++||||+.|++..+...|++ |||..+.||+|+|.+.
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSq-yGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQ-YGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeec-cCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 4578999999999999999999999 7999999999987 8999999999999999999998 9999999999999986
Q ss_pred CCC
Q 024696 251 KTP 253 (264)
Q Consensus 251 ~~~ 253 (264)
..-
T Consensus 113 ~~Y 115 (219)
T KOG0126|consen 113 SNY 115 (219)
T ss_pred ccc
Confidence 444
No 79
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=4.9e-12 Score=111.69 Aligned_cols=118 Identities=23% Similarity=0.260 Sum_probs=92.2
Q ss_pred ecCHHHHHHHHH-hcCCCCCCcceEEeecCCCCCCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCce
Q 024696 125 FTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEV 203 (264)
Q Consensus 125 F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V 203 (264)
..+.++|.+||. -. |..|.|+-.+.......|. -+....+.++.||||.||.++.|+||..+|++. |+|
T Consensus 41 ~~~~eaal~al~E~t-----gy~l~ve~gqrk~ggPpP~----weg~~p~~G~EVfvGkIPrD~~EdeLvplfEki-G~I 110 (506)
T KOG0117|consen 41 VQSEEAALKALLERT-----GYTLVVENGQRKYGGPPPG----WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKI-GKI 110 (506)
T ss_pred cccHHHHHHHHHHhc-----CceEEEeccccccCCCCCc----ccCCCCCCCceEEecCCCccccchhhHHHHHhc-cce
Confidence 444788888875 33 3456666554443333332 122223567999999999999999999999995 999
Q ss_pred EEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCcee-CCeeEEEeecCC
Q 024696 204 QRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVL-GSLPIRVSPSKT 252 (264)
Q Consensus 204 ~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~-~g~~l~v~~a~~ 252 (264)
-+++++.|+ |.+||||||+|.+.++|++|+. ||+++| .|+.|.|+-+..
T Consensus 111 ~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sva 163 (506)
T KOG0117|consen 111 YELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVA 163 (506)
T ss_pred eeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeee
Confidence 999999996 8999999999999999999998 999999 589999887643
No 80
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=3.4e-12 Score=91.42 Aligned_cols=78 Identities=24% Similarity=0.313 Sum_probs=70.7
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
++.-.+.|||.|||+++|.++..++|..||.|..|++-..+++ +|.|||.|++..+|++|.. |+|..+.++.+.|.+-
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T-rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET-RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc-CceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 3456778999999999999999999999999999999766543 5999999999999999998 9999999999999885
No 81
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=1.6e-12 Score=96.56 Aligned_cols=77 Identities=30% Similarity=0.432 Sum_probs=70.8
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 249 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~ 249 (264)
..++|||||||...++||.|.++|+. +|.|..|.+--|. ..+=|||||+|.+.++|..|+. ++|..+..++|.+.|
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~-cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSK-CGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHh-ccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 45699999999999999999999999 6999999887776 3477999999999999999999 999999999999988
Q ss_pred c
Q 024696 250 S 250 (264)
Q Consensus 250 a 250 (264)
.
T Consensus 113 D 113 (153)
T KOG0121|consen 113 D 113 (153)
T ss_pred c
Confidence 5
No 82
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=8.4e-14 Score=109.35 Aligned_cols=78 Identities=22% Similarity=0.341 Sum_probs=72.9
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~--s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
.++.-|||||||++.||.||.-.|++||+|.+|.+++|+++ |+||||+.|++..+...|+. |||..+.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 45667999999999999999999999999999999999974 79999999999999999997 9999999999999985
Q ss_pred C
Q 024696 153 K 153 (264)
Q Consensus 153 ~ 153 (264)
.
T Consensus 113 ~ 113 (219)
T KOG0126|consen 113 S 113 (219)
T ss_pred c
Confidence 4
No 83
>smart00360 RRM RNA recognition motif.
Probab=99.36 E-value=4e-12 Score=85.76 Aligned_cols=68 Identities=40% Similarity=0.587 Sum_probs=62.0
Q ss_pred EcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEe
Q 024696 83 VSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 150 (264)
Q Consensus 83 V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~ 150 (264)
|+|||+.+++++|+++|+.||.|..+.+..++. .++|+|||+|.+.++|..|++ +++..+.|+.+.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 589999999999999999999999999988753 568999999999999999998 99999999998874
No 84
>smart00360 RRM RNA recognition motif.
Probab=99.36 E-value=4.4e-12 Score=85.57 Aligned_cols=68 Identities=32% Similarity=0.535 Sum_probs=62.6
Q ss_pred EeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEe
Q 024696 180 CTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 248 (264)
Q Consensus 180 V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~ 248 (264)
|+|||..+++++|+++|++ ||.|..+.+..++ +.++|+|||+|.+.++|..|++ +++..+.|+.++|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~-~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSK-FGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHh-hCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 5799999999999999999 6999999998875 5789999999999999999998 99999999999874
No 85
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=2.5e-12 Score=108.28 Aligned_cols=79 Identities=20% Similarity=0.301 Sum_probs=73.2
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
..-+||||+.|+++++|..|++.|+.||+|+.|.++.|+- .++|||||+|+++.+...|.+ .+|..|.|+.|.|..-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 4568899999999999999999999999999999999974 579999999999999999998 9999999999999886
Q ss_pred CC
Q 024696 153 KT 154 (264)
Q Consensus 153 ~~ 154 (264)
..
T Consensus 179 Rg 180 (335)
T KOG0113|consen 179 RG 180 (335)
T ss_pred cc
Confidence 44
No 86
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.35 E-value=1e-11 Score=84.53 Aligned_cols=72 Identities=36% Similarity=0.577 Sum_probs=66.5
Q ss_pred eEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q 024696 177 TIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 249 (264)
Q Consensus 177 ~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~ 249 (264)
+|+|+|||..+++++|+++|+. ||.|..+.+..++ +.++|+|||+|.+.++|..|++ +++..+.|+++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~-~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSK-FGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHh-cCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999 6999999998876 4678999999999999999999 999999999999875
No 87
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.35 E-value=7.4e-12 Score=85.25 Aligned_cols=72 Identities=46% Similarity=0.639 Sum_probs=65.7
Q ss_pred EEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEee
Q 024696 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 151 (264)
Q Consensus 80 ~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~-~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~ 151 (264)
+|+|+|||+.+++++|+++|+.+|.|..+.+..+.. .++|+|||+|.+.++|..|++ +++..+.|+++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999999998764 457999999999999999998 999989999998864
No 88
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.35 E-value=4.9e-11 Score=105.18 Aligned_cols=71 Identities=23% Similarity=0.164 Sum_probs=65.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 176 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 176 ~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
++|+|.|||.++|++.|++-|.. ||.|.++.| ...++++| .|.|.++++|+.|+. |+|..+.|+.|+|.|.
T Consensus 537 ~qIiirNlP~dfTWqmlrDKfre-~G~v~yadi-me~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 537 CQIIIRNLPFDFTWQMLRDKFRE-IGHVLYADI-MENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cEEEEecCCccccHHHHHHHHHh-ccceehhhh-hccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 57999999999999999999999 699999999 55577766 999999999999999 9999999999999873
No 89
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=5.5e-12 Score=106.21 Aligned_cols=80 Identities=21% Similarity=0.365 Sum_probs=74.6
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 249 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~ 249 (264)
.+-+||||+.|+.+++|.+|+..|+. ||.|+.|.++.|. |+++|||||+|++.-+...|.. .+|..|.|+.|.|.+
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~-YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEK-YGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHh-cCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 45599999999999999999999998 7999999999996 8999999999999999999998 999999999999998
Q ss_pred cCCC
Q 024696 250 SKTP 253 (264)
Q Consensus 250 a~~~ 253 (264)
-.-.
T Consensus 178 ERgR 181 (335)
T KOG0113|consen 178 ERGR 181 (335)
T ss_pred cccc
Confidence 6544
No 90
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=6e-12 Score=90.18 Aligned_cols=78 Identities=21% Similarity=0.261 Sum_probs=70.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKT 252 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~~ 252 (264)
.++.|||.|||..+|.|+..++|.+ ||.|..|+|-..++ -+|.|||.|++..+|.+|++ |+|..+.++.+.|-|-.|
T Consensus 17 vnriLyirNLp~~ITseemydlFGk-yg~IrQIRiG~~k~-TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGK-YGTIRQIRIGNTKE-TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhc-ccceEEEEecCccC-cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 4588999999999999999999999 79999999976643 67899999999999999999 999999999999998655
Q ss_pred C
Q 024696 253 P 253 (264)
Q Consensus 253 ~ 253 (264)
.
T Consensus 95 ~ 95 (124)
T KOG0114|consen 95 E 95 (124)
T ss_pred H
Confidence 3
No 91
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.34 E-value=3.8e-12 Score=110.41 Aligned_cols=173 Identities=20% Similarity=0.213 Sum_probs=126.9
Q ss_pred CcEEEEcCCCCcCCHHHHHHHhhc---C-CCeeEEEEecC-CCCCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEeec
Q 024696 78 RRTVYVSDIDQQVTEEQLATLFLT---C-GQVVDCRICGD-PNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 152 (264)
Q Consensus 78 ~~~v~V~nLp~~~te~~L~~~F~~---~-G~I~~v~i~~~-~~~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~s 152 (264)
.-.|..++||+++++.|+.++|.+ . |..+.|.++.. .++..|-|||.|..+++|+.|+..+...++-|.|.+-+|
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRS 240 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345889999999999999999962 2 34566777765 456789999999999999999987777788887777665
Q ss_pred CCCCC----------CCC----CCCC---CCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEE--EEEecc-C
Q 024696 153 KTAIA----------PVN----PTFL---PRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQR--LRLLGD-Y 212 (264)
Q Consensus 153 ~~~~~----------~~~----~~~~---~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~--v~i~~~-~ 212 (264)
+.... +.. .... +...-.......+|-+++||+..+.|||.++|.+|--.|.. |.+..+ .
T Consensus 241 TaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q 320 (508)
T KOG1365|consen 241 TAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ 320 (508)
T ss_pred hHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC
Confidence 33110 000 0111 11112223345799999999999999999999996334544 655554 4
Q ss_pred CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 213 QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 213 ~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
|++.|-|||+|.+.++|..|.. .+.+...++.|.|-.+
T Consensus 321 GrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 321 GRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred CCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 8899999999999999999997 6666667788877543
No 92
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.32 E-value=1.1e-11 Score=81.21 Aligned_cols=55 Identities=31% Similarity=0.536 Sum_probs=49.8
Q ss_pred HHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 192 IKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 192 L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
|+++|++ ||+|..+.+..+. +++|||+|.+.++|.+|++ |||..++|++|+|+||
T Consensus 1 L~~~f~~-fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSK-FGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTT-TS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCC-cccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 6789999 6999999998765 4799999999999999998 9999999999999986
No 93
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.32 E-value=3e-12 Score=102.62 Aligned_cols=83 Identities=27% Similarity=0.337 Sum_probs=75.8
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEe
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 150 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~ 150 (264)
+.....+|.|-||.+.++.++|+..|++||.|-+|.|.+|.- .++|||||.|.+..+|+.|++ |+|.++.|++|+|+
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 344567899999999999999999999999999999999985 479999999999999999998 99999999999999
Q ss_pred ecCCCC
Q 024696 151 PSKTAI 156 (264)
Q Consensus 151 ~s~~~~ 156 (264)
+++-..
T Consensus 89 ~arygr 94 (256)
T KOG4207|consen 89 MARYGR 94 (256)
T ss_pred hhhcCC
Confidence 986543
No 94
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=5.7e-12 Score=114.93 Aligned_cols=172 Identities=22% Similarity=0.345 Sum_probs=136.5
Q ss_pred CCcEEEEcCCCCcCCHHHHHHHhhcC-----------C-CeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCCCCCC
Q 024696 77 IRRTVYVSDIDQQVTEEQLATLFLTC-----------G-QVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGF 144 (264)
Q Consensus 77 ~~~~v~V~nLp~~~te~~L~~~F~~~-----------G-~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~l~~~~~~g 144 (264)
..+.++|+++|+.++++....+|..- | .+..+.+...+ .+||++|.+.++|..|+.+++..+.|
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~----nfa~ie~~s~~~at~~~~~~~~~f~g 249 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEK----NFAFIEFRSISEATEAMALDGIIFEG 249 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccc----cceeEEecCCCchhhhhcccchhhCC
Confidence 45669999999999999999999843 2 35666665555 59999999999999999999999999
Q ss_pred cceEEeecCCCCCCCCCCCCC--------CC-ccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--C
Q 024696 145 YPVRVLPSKTAIAPVNPTFLP--------RS-EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--Q 213 (264)
Q Consensus 145 ~~l~V~~s~~~~~~~~~~~~~--------~~-~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~ 213 (264)
+++++..-........-.... .. ..........++|++||..+++++++++... +|.+....++++. |
T Consensus 250 ~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~-fg~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 250 RPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDS-FGPLKAFRLVKDSATG 328 (500)
T ss_pred CCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHh-cccchhheeecccccc
Confidence 999887643322211110000 00 0011234478999999999999999999999 5999999999976 6
Q ss_pred CceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecCCC
Q 024696 214 HSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTP 253 (264)
Q Consensus 214 ~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~~~ 253 (264)
.++||||.+|-+......|+. +||..+++++|.|+.|-+.
T Consensus 329 ~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g 369 (500)
T KOG0120|consen 329 NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVG 369 (500)
T ss_pred cccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhcc
Confidence 899999999999999999999 9999999999999987654
No 95
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.29 E-value=4.2e-12 Score=99.92 Aligned_cols=77 Identities=30% Similarity=0.372 Sum_probs=72.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
...|||||||+..++++.|.++|-+ .|.|..+.+++|. +..+||||++|.+.++|+-|++ ||...+.|++|+|..+
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iq-agpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQ-AGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHh-cCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 3489999999999999999999999 4999999999997 5689999999999999999999 9999999999999998
Q ss_pred C
Q 024696 251 K 251 (264)
Q Consensus 251 ~ 251 (264)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 7
No 96
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.29 E-value=2.1e-11 Score=103.93 Aligned_cols=77 Identities=35% Similarity=0.559 Sum_probs=73.2
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 024696 175 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 251 (264)
Q Consensus 175 ~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~ 251 (264)
..+|||+|||..+++++|.++|.+ ||.|..+.+..+. +.++|+|||+|.+.++|..|++ ++|..+.|+.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~-~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKK-FGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHh-cCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 599999999999999999999999 6999999999985 7899999999999999999999 99999999999999976
Q ss_pred C
Q 024696 252 T 252 (264)
Q Consensus 252 ~ 252 (264)
+
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 4
No 97
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=6.5e-12 Score=94.18 Aligned_cols=75 Identities=25% Similarity=0.338 Sum_probs=70.3
Q ss_pred EEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecCCC
Q 024696 81 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTA 155 (264)
Q Consensus 81 v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~--s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~~ 155 (264)
|||.++...++|++|.+.|..||+|..+.+.-|..+ .+|||+|+|++.++|+.|+. +||..+.|++|.|.|.-..
T Consensus 75 i~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 75 IFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVK 152 (170)
T ss_pred EEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEec
Confidence 999999999999999999999999999999988865 48999999999999999998 9999999999999997443
No 98
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=7.6e-12 Score=98.70 Aligned_cols=78 Identities=24% Similarity=0.336 Sum_probs=70.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKT 252 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~~ 252 (264)
..+.|||+|||.++.+.||.++|.+ ||.|..|.+...++ +-.||||+|+++.+|..|+. -+|..+.|+.|+|+|+..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyK-yg~i~~ieLK~r~g-~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYK-YGRIREIELKNRPG-PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhh-hcceEEEEeccCCC-CCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 4589999999999999999999999 79999999866554 23599999999999999999 999999999999999765
Q ss_pred C
Q 024696 253 P 253 (264)
Q Consensus 253 ~ 253 (264)
-
T Consensus 83 g 83 (241)
T KOG0105|consen 83 G 83 (241)
T ss_pred C
Confidence 4
No 99
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.27 E-value=1.6e-11 Score=80.30 Aligned_cols=55 Identities=35% Similarity=0.480 Sum_probs=50.2
Q ss_pred HHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 95 LATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 95 L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
|+++|++||+|.++.+..+. +++|||+|.+.++|..|++ |||..+.|++|+|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998876 3799999999999999998 9999999999999985
No 100
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.26 E-value=9.9e-11 Score=104.75 Aligned_cols=172 Identities=24% Similarity=0.235 Sum_probs=127.1
Q ss_pred CCcEEEEcCCCCcCCHHHHHHHhhcCCCeeE-EEEecCCC-CCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEeecCC
Q 024696 77 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVD-CRICGDPN-SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 154 (264)
Q Consensus 77 ~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~-v~i~~~~~-~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~s~~ 154 (264)
....|.+++||+.+|++||.++|+..-.+.. +.+..+.. .+.|-|||+|++.+.|++|+..+...++.|-|.|-.|..
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSSR 181 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhHH
Confidence 4567999999999999999999997765554 44555543 578999999999999999998787888888888866532
Q ss_pred CCC---------------CCCC------------------------------------------------------CCCC
Q 024696 155 AIA---------------PVNP------------------------------------------------------TFLP 165 (264)
Q Consensus 155 ~~~---------------~~~~------------------------------------------------------~~~~ 165 (264)
... +-.. .+..
T Consensus 182 ~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~ 261 (510)
T KOG4211|consen 182 AEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPV 261 (510)
T ss_pred HHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccCC
Confidence 000 0000 0000
Q ss_pred CCcccc----------ccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCceeEEEEEECCHHHHHHHHH
Q 024696 166 RSEDER----------EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN 234 (264)
Q Consensus 166 ~~~~~~----------~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~ 234 (264)
.....+ ......+..++||...++.++.++|+. .....|.|-..+ ++..|-|.|+|.+.++|..|+.
T Consensus 262 ~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFsp--l~p~~v~i~ig~dGr~TGEAdveF~t~edav~Ams 339 (510)
T KOG4211|consen 262 SSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSP--LNPYRVHIEIGPDGRATGEADVEFATGEDAVGAMG 339 (510)
T ss_pred CCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCC--CCceeEEEEeCCCCccCCcceeecccchhhHhhhc
Confidence 000000 112367889999999999999999995 565677766654 8899999999999999999998
Q ss_pred hCCceeCCeeEEEeec
Q 024696 235 CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 235 l~g~~~~g~~l~v~~a 250 (264)
.++..+..+-|.+-..
T Consensus 340 kd~anm~hrYVElFln 355 (510)
T KOG4211|consen 340 KDGANMGHRYVELFLN 355 (510)
T ss_pred cCCcccCcceeeeccc
Confidence 7888888887776543
No 101
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.25 E-value=1.2e-11 Score=111.94 Aligned_cols=79 Identities=23% Similarity=0.343 Sum_probs=74.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 024696 176 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKT 252 (264)
Q Consensus 176 ~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~~ 252 (264)
..+||||+|+++++++|.++|+. .|.|..+++..|+ |+++||||++|.+.++|..|+. |||.+++|++|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~-~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSG-VGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhc-cCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 88999999999999999999999 6999999999987 8899999999999999999998 999999999999999877
Q ss_pred CCC
Q 024696 253 PVR 255 (264)
Q Consensus 253 ~~~ 255 (264)
...
T Consensus 98 ~~~ 100 (435)
T KOG0108|consen 98 RKN 100 (435)
T ss_pred cch
Confidence 644
No 102
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=7e-12 Score=101.40 Aligned_cols=82 Identities=32% Similarity=0.404 Sum_probs=75.2
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEee
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 151 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~ 151 (264)
....++||||+|..+++|.-|...|-+||.|.+|.++-|-. .++|||||+|...|+|..||. ||+..+.||.|+|++
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 34678999999999999999999999999999999998763 578999999999999999998 999999999999999
Q ss_pred cCCCC
Q 024696 152 SKTAI 156 (264)
Q Consensus 152 s~~~~ 156 (264)
+++..
T Consensus 87 AkP~k 91 (298)
T KOG0111|consen 87 AKPEK 91 (298)
T ss_pred cCCcc
Confidence 87643
No 103
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.25 E-value=1.7e-11 Score=111.01 Aligned_cols=76 Identities=34% Similarity=0.473 Sum_probs=72.2
Q ss_pred cEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecCC
Q 024696 79 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 154 (264)
Q Consensus 79 ~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~ 154 (264)
+.|||||+|++++|++|.++|+..|.|.+++++.|+. .++||||++|.+.++|.+|++ |||..+.|++|+|.|+..
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 8999999999999999999999999999999999985 468999999999999999998 999999999999999754
No 104
>smart00361 RRM_1 RNA recognition motif.
Probab=99.22 E-value=6.4e-11 Score=81.21 Aligned_cols=59 Identities=20% Similarity=0.350 Sum_probs=51.5
Q ss_pred HHHHHHHhh----hcCCceEEEE-EeccC----CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEe
Q 024696 189 QGDIKLFFE----SVCGEVQRLR-LLGDY----QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 248 (264)
Q Consensus 189 e~~L~~~F~----~~~G~V~~v~-i~~~~----~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~ 248 (264)
+++|+++|+ + ||.|.++. +..++ ++++|+|||+|.+.++|.+|++ |||..+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~-fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEY-FGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHh-cCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 678889998 8 69999985 55443 6789999999999999999998 99999999999863
No 105
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.20 E-value=2.9e-11 Score=101.57 Aligned_cols=75 Identities=21% Similarity=0.384 Sum_probs=69.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecCCCC
Q 024696 176 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTPV 254 (264)
Q Consensus 176 ~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~~~~ 254 (264)
-++||||||..+++.+|+.+|++ ||+|..|.|+++ ||||..++...|..|+. |||..+.|..|+|+-+|++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~-ygkVlECDIvKN------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQ-YGKVLECDIVKN------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHh-hCceEeeeeecc------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 47999999999999999999999 799999999886 99999999999999998 99999999999999999884
Q ss_pred CCC
Q 024696 255 RPR 257 (264)
Q Consensus 255 ~~~ 257 (264)
..+
T Consensus 76 k~s 78 (346)
T KOG0109|consen 76 KAS 78 (346)
T ss_pred CCc
Confidence 443
No 106
>smart00361 RRM_1 RNA recognition motif.
Probab=99.16 E-value=1.3e-10 Score=79.67 Aligned_cols=58 Identities=24% Similarity=0.291 Sum_probs=51.0
Q ss_pred HHHHHHHhh----cCCCeeEEE-EecCC----CCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEE
Q 024696 92 EEQLATLFL----TCGQVVDCR-ICGDP----NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 149 (264)
Q Consensus 92 e~~L~~~F~----~~G~I~~v~-i~~~~----~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V 149 (264)
+++|+++|+ .||.|.++. +..++ +.++|+|||+|.+.++|.+|++ |||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999999 999999985 55544 4578999999999999999998 9999999999876
No 107
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=7.2e-12 Score=101.27 Aligned_cols=136 Identities=23% Similarity=0.299 Sum_probs=112.2
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecC
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 153 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~ 153 (264)
....++|||+|+...++|+-|.|+|-+-|+|..|.|..++.....||||.|.++.++..|++ +||..+.++++.+++-.
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 45678999999999999999999999999999999998776443499999999999999999 99999999999888742
Q ss_pred CCCCCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCceeEEEEEECCHHHHHHH
Q 024696 154 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAA 232 (264)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-~~~~g~afV~f~~~~~A~~A 232 (264)
... . .-|...++++.+...|+.. |.+..+++..+. |.++.++|+++-...+.=.+
T Consensus 86 G~s-----------h------------apld~r~~~ei~~~v~s~a-~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~ 141 (267)
T KOG4454|consen 86 GNS-----------H------------APLDERVTEEILYEVFSQA-GPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFA 141 (267)
T ss_pred CCC-----------c------------chhhhhcchhhheeeeccc-CCCCCccccccccCCccCccchhhhhhhcCcHH
Confidence 110 0 0145568899999999995 999999999875 67888999998776655555
Q ss_pred HH
Q 024696 233 LN 234 (264)
Q Consensus 233 i~ 234 (264)
+.
T Consensus 142 ~~ 143 (267)
T KOG4454|consen 142 LD 143 (267)
T ss_pred hh
Confidence 54
No 108
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.14 E-value=1.4e-10 Score=94.49 Aligned_cols=78 Identities=26% Similarity=0.428 Sum_probs=71.4
Q ss_pred CceEEEeCCCCCCCHHHHHH----HhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q 024696 175 SRTIYCTNIDKKVTQGDIKL----FFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 249 (264)
Q Consensus 175 ~~~l~V~nL~~~~te~~L~~----~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~ 249 (264)
+.||||.||+..+..++|+. +|++ ||+|.+|...+. .+.+|.|||.|.+.+.|-.|+. |+|+.+.|++++|+|
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsq-fG~ildI~a~kt-~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqy 86 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQ-FGKILDISAFKT-PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQY 86 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHh-hCCeEEEEecCC-CCccCceEEEecChhHHHHHHHHhcCCcccCchhheec
Confidence 35999999999999999998 9999 699999988765 4688999999999999999998 999999999999999
Q ss_pred cCCCC
Q 024696 250 SKTPV 254 (264)
Q Consensus 250 a~~~~ 254 (264)
|+.+.
T Consensus 87 A~s~s 91 (221)
T KOG4206|consen 87 AKSDS 91 (221)
T ss_pred ccCcc
Confidence 98764
No 109
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=5e-11 Score=99.12 Aligned_cols=83 Identities=23% Similarity=0.354 Sum_probs=73.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCceeEEEEEECCHHHHHHHHH-hCCcee---CCeeEEEe
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVL---GSLPIRVS 248 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~-l~g~~~---~g~~l~v~ 248 (264)
..++||||-|...-.|||++.+|.. ||.+++|.+.+.+ |.+||||||.|.+..+|+.||+ |||..- -...|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~p-fG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQP-FGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcc-cCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 4589999999999999999999999 5999999999976 8899999999999999999999 998643 34689999
Q ss_pred ecCCCCCCC
Q 024696 249 PSKTPVRPR 257 (264)
Q Consensus 249 ~a~~~~~~~ 257 (264)
|+.+..++-
T Consensus 97 ~ADTdkER~ 105 (371)
T KOG0146|consen 97 FADTDKERT 105 (371)
T ss_pred eccchHHHH
Confidence 998875543
No 110
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=1.8e-10 Score=109.40 Aligned_cols=163 Identities=18% Similarity=0.279 Sum_probs=136.4
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEee
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 151 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~ 151 (264)
+...+++||+|||+..+++.+|+..|..+|.|.+|.|-... ++..-||||.|.+...+-.|.. +.+..+....+++..
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 45678899999999999999999999999999999998763 4555799999999999999986 888887655555555
Q ss_pred cCCCCCCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHH
Q 024696 152 SKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIA 231 (264)
Q Consensus 152 s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~ 231 (264)
... .....+.+++++|++.+....|...|.. ||.|..|.+-. |. -||+|.|++...|+.
T Consensus 448 G~~----------------kst~ttr~~sgglg~w~p~~~l~r~fd~-fGpir~Idy~h--gq--~yayi~yes~~~aq~ 506 (975)
T KOG0112|consen 448 GQP----------------KSTPTTRLQSGGLGPWSPVSRLNREFDR-FGPIRIIDYRH--GQ--PYAYIQYESPPAAQA 506 (975)
T ss_pred ccc----------------ccccceeeccCCCCCCChHHHHHHHhhc-cCcceeeeccc--CC--cceeeecccCccchh
Confidence 421 1224588999999999999999999999 59999987733 22 399999999999999
Q ss_pred HHH-hCCceeCC--eeEEEeecCCCCCCC
Q 024696 232 ALN-CSGAVLGS--LPIRVSPSKTPVRPR 257 (264)
Q Consensus 232 Ai~-l~g~~~~g--~~l~v~~a~~~~~~~ 257 (264)
|+. |.|..++| +.+.|.|+.++.+.+
T Consensus 507 a~~~~rgap~G~P~~r~rvdla~~~~~~P 535 (975)
T KOG0112|consen 507 ATHDMRGAPLGGPPRRLRVDLASPPGATP 535 (975)
T ss_pred hHHHHhcCcCCCCCcccccccccCCCCCh
Confidence 998 99999976 789999998876654
No 111
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.03 E-value=8.7e-10 Score=94.86 Aligned_cols=74 Identities=24% Similarity=0.424 Sum_probs=69.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH--hCCceeCCeeEEEeecC
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN--CSGAVLGSLPIRVSPSK 251 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~--l~g~~~~g~~l~v~~a~ 251 (264)
..++|||++|...++|.+|+++|.+ ||+|+.+.+.... ++|||+|.+.++|..|.+ +|...+.|++|+|.|++
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyq-yGeirsi~~~~~~----~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQ-YGEIRSIRILPRK----GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhh-cCCeeeEEeeccc----ccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 4589999999999999999999999 7999999998765 499999999999999996 78899999999999999
Q ss_pred C
Q 024696 252 T 252 (264)
Q Consensus 252 ~ 252 (264)
|
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 9
No 112
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=1.4e-11 Score=116.25 Aligned_cols=145 Identities=20% Similarity=0.197 Sum_probs=123.2
Q ss_pred cEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEe--cCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEeecCCCC
Q 024696 79 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRIC--GDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAI 156 (264)
Q Consensus 79 ~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~--~~~~~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~s~~~~ 156 (264)
.++||+||+..+.+.+|...|..+|.+..+.+. .+.+.-+|+||++|.+++.+.+|++++...+.|
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g------------ 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG------------ 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh------------
Confidence 458999999999999999999999988776665 233455799999999999999999955444443
Q ss_pred CCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCceeEEEEEECCHHHHHHHHH-
Q 024696 157 APVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN- 234 (264)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~- 234 (264)
...++|.|.|+..|.++++.+++. +|++.+.+++... |+++|.|+|.|.+..+|.++..
T Consensus 736 ------------------K~~v~i~g~pf~gt~e~~k~l~~~-~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s 796 (881)
T KOG0128|consen 736 ------------------KISVAISGPPFQGTKEELKSLASK-TGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVAS 796 (881)
T ss_pred ------------------hhhhheeCCCCCCchHHHHhhccc-cCCccccchhhhhccccccceeccCCCcchhhhhccc
Confidence 156899999999999999999999 5999999988766 8999999999999999999997
Q ss_pred hCCceeCCeeEEEeecCCCC
Q 024696 235 CSGAVLGSLPIRVSPSKTPV 254 (264)
Q Consensus 235 l~g~~~~g~~l~v~~a~~~~ 254 (264)
.++..+.-+.+.|.-+.|..
T Consensus 797 ~d~~~~rE~~~~v~vsnp~~ 816 (881)
T KOG0128|consen 797 VDVAGKRENNGEVQVSNPER 816 (881)
T ss_pred chhhhhhhcCccccccCCcc
Confidence 88888888888888876643
No 113
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.99 E-value=8.7e-10 Score=95.55 Aligned_cols=174 Identities=24% Similarity=0.225 Sum_probs=132.7
Q ss_pred CCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEecCHHHHHHHHHhcCC-CCCCcceEEeecC
Q 024696 77 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGT-MLGFYPVRVLPSK 153 (264)
Q Consensus 77 ~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~--~~s~G~afV~F~~~~~a~~Ai~l~~~-~~~g~~l~V~~s~ 153 (264)
...+.|++++.+.+.+.+...++..+|......+.... ..++|++++.|+..+.+..|+++.+. ...++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 56789999999999999899999999977666665533 36789999999999999999996664 4445444333332
Q ss_pred CCCCCCCCCCCCCCccccccCCceEE-EeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHH
Q 024696 154 TAIAPVNPTFLPRSEDEREMCSRTIY-CTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAI 230 (264)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~l~-V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~ 230 (264)
..... ...+..... .....+++ +++++..+++++|+..|.. +|.|..++++.++ +.++|+|+|.|.+..++.
T Consensus 167 ~~~~~---~~n~~~~~~-~~~s~~~~~~~~~~f~~~~d~~~~~~~~-~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~ 241 (285)
T KOG4210|consen 167 RRGLR---PKNKLSRLS-SGPSDTIFFVGELDFSLTRDDLKEHFVS-SGEITSVRLPTDEESGDSKGFAYVDFSAGNSKK 241 (285)
T ss_pred ccccc---ccchhcccc-cCccccceeecccccccchHHHhhhccC-cCcceeeccCCCCCccchhhhhhhhhhhchhHH
Confidence 21100 000111111 22334555 9999999999999999987 6999999999876 689999999999999999
Q ss_pred HHHHhCCceeCCeeEEEeecCCCCC
Q 024696 231 AALNCSGAVLGSLPIRVSPSKTPVR 255 (264)
Q Consensus 231 ~Ai~l~g~~~~g~~l~v~~a~~~~~ 255 (264)
.++......+.|+++.+.+.++.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 242 LALNDQTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred HHhhcccCcccCcccccccCCCCcc
Confidence 9997678899999999999888744
No 114
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.99 E-value=1.1e-09 Score=94.20 Aligned_cols=77 Identities=21% Similarity=0.396 Sum_probs=69.6
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH--hcCCCCCCcceEEee
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS--LAGTMLGFYPVRVLP 151 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~--l~~~~~~g~~l~V~~ 151 (264)
++....+|||++|-..++|.+|++.|.+||+|+.+.+...+ ++|||+|.+.++|+.|.+ +|...+.|++|.|.|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~----~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK----GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc----ccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 45566789999999999999999999999999999998776 599999999999999986 787778999999999
Q ss_pred cCC
Q 024696 152 SKT 154 (264)
Q Consensus 152 s~~ 154 (264)
+..
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 865
No 115
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.98 E-value=2.6e-09 Score=93.05 Aligned_cols=172 Identities=19% Similarity=0.095 Sum_probs=116.9
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecC--CCCCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEeec
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD--PNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 152 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~--~~~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~s 152 (264)
..+...+..++|||..++.+|-.+|+...-..-...++. .+.-.|.|.|.|.|.+.-+.|++.+.+.++++.+.|-.+
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka 136 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKA 136 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeecc
Confidence 345566899999999999999999985422211111111 112238999999999999999998888899999999776
Q ss_pred CCCCCCCCCCCCCCC--ccccccCCceEEEeCCCCCCCHHHHHHHhhh---cCCceEEEEEecc-CCCceeEEEEEECCH
Q 024696 153 KTAIAPVNPTFLPRS--EDEREMCSRTIYCTNIDKKVTQGDIKLFFES---VCGEVQRLRLLGD-YQHSTRIAFVEFAMA 226 (264)
Q Consensus 153 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~---~~G~V~~v~i~~~-~~~~~g~afV~f~~~ 226 (264)
....--......... ...+....-.|-.++||+++++.|+.++|.+ .-|.++.|-+++. .|+.+|-|||.|...
T Consensus 137 ~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~e 216 (508)
T KOG1365|consen 137 TGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACE 216 (508)
T ss_pred CchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCH
Confidence 432111000000000 0000112245778899999999999999962 2246677766665 489999999999999
Q ss_pred HHHHHHHHhCCceeCCeeEE
Q 024696 227 ESAIAALNCSGAVLGSLPIR 246 (264)
Q Consensus 227 ~~A~~Ai~l~g~~~~g~~l~ 246 (264)
++|+.|+..|-..++-|.|.
T Consensus 217 e~aq~aL~khrq~iGqRYIE 236 (508)
T KOG1365|consen 217 EDAQFALRKHRQNIGQRYIE 236 (508)
T ss_pred HHHHHHHHHHHHHHhHHHHH
Confidence 99999997555555555443
No 116
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.91 E-value=2.8e-09 Score=100.02 Aligned_cols=75 Identities=29% Similarity=0.455 Sum_probs=69.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKT 252 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~~ 252 (264)
.++|||||+|+..++|.||.++|+. ||+|.+|.+.. ++|+|||.+.+..+|.+|++ |++..+.++.|+|.|+..
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~fee-fGeiqSi~li~----~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEE-FGEIQSIILIP----PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHh-cccceeEeecc----CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 4689999999999999999999999 69999999854 56799999999999999998 999999999999999876
Q ss_pred C
Q 024696 253 P 253 (264)
Q Consensus 253 ~ 253 (264)
.
T Consensus 495 ~ 495 (894)
T KOG0132|consen 495 K 495 (894)
T ss_pred C
Confidence 5
No 117
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.91 E-value=4.4e-09 Score=98.76 Aligned_cols=76 Identities=24% Similarity=0.323 Sum_probs=70.2
Q ss_pred CCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecCCC
Q 024696 77 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTA 155 (264)
Q Consensus 77 ~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~~ 155 (264)
.++|||||+|+..++|+||.++|+.||+|.+|.++... |||||.+....+|.+|+. |++..+.++.|+|.|+...
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R----~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR----GCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC----ceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 56889999999999999999999999999999997665 799999999999999998 9999999999999998654
Q ss_pred C
Q 024696 156 I 156 (264)
Q Consensus 156 ~ 156 (264)
.
T Consensus 496 G 496 (894)
T KOG0132|consen 496 G 496 (894)
T ss_pred C
Confidence 3
No 118
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.89 E-value=2.3e-09 Score=97.43 Aligned_cols=170 Identities=17% Similarity=0.158 Sum_probs=114.0
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecC
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 153 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~ 153 (264)
+..+++|+|-|||.++++++|+++|+.||+|++|+.-..+. |.+||+|.|..+|++|++ +++..+.|++++-..+.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~---~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~ 148 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKR---GIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGA 148 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccC---ceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcc
Confidence 56788999999999999999999999999999976665554 899999999999999998 99999999999822211
Q ss_pred CCCCC--CCCCCCCC----Ccccc--ccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECC
Q 024696 154 TAIAP--VNPTFLPR----SEDER--EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAM 225 (264)
Q Consensus 154 ~~~~~--~~~~~~~~----~~~~~--~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~ 225 (264)
..... ....+... ..... .-....++ +.|++..+..-++.+++ +||.+.. +.... -+..-+++|.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~-g~l~P~~s~~~~~~~~~-~~~~~~~-~~~~~---~~hq~~~~~~~ 222 (549)
T KOG4660|consen 149 RRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLF-GMLSPTRSSILLEHISS-VDGSSPG-RETPL---LNHQRFVEFAD 222 (549)
T ss_pred cccchhcccchhhhhccchhhcCCCCCCcCCcce-eeeccchhhhhhhcchh-ccCcccc-ccccc---hhhhhhhhhcc
Confidence 10000 00000000 00000 00112233 33888877755555655 4788766 33221 11256888888
Q ss_pred HHHHHHHHHhCCceeCCeeEEEeecCCC
Q 024696 226 AESAIAALNCSGAVLGSLPIRVSPSKTP 253 (264)
Q Consensus 226 ~~~A~~Ai~l~g~~~~g~~l~v~~a~~~ 253 (264)
..++..+..-.|..+.|..-.+.++.+.
T Consensus 223 ~~s~a~~~~~~G~~~s~~~~v~t~S~~~ 250 (549)
T KOG4660|consen 223 NRSYAFSEPRGGFLISNSSGVITFSGPG 250 (549)
T ss_pred ccchhhcccCCceecCCCCceEEecCCC
Confidence 8888555552388888888888888764
No 119
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.84 E-value=5.1e-09 Score=86.69 Aligned_cols=162 Identities=21% Similarity=0.333 Sum_probs=120.5
Q ss_pred EEEcCCCCcCCHHH-H--HHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecCCC
Q 024696 81 VYVSDIDQQVTEEQ-L--ATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTA 155 (264)
Q Consensus 81 v~V~nLp~~~te~~-L--~~~F~~~G~I~~v~i~~~~~-~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~~ 155 (264)
.+++++-..+..+- + ...|+.|......++..+.- .-.+++|+.|.....-.++-. -++++++.++++....+.-
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtsw 178 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSW 178 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccccc
Confidence 45555555544443 3 66788787777777777653 446899999987777767665 5667777776665543211
Q ss_pred CCCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHH
Q 024696 156 IAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAAL 233 (264)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai 233 (264)
.++. ..+-......||.|.|..+++++.|...|.+ |-.-...++++|. ++++||+||.|.+..++..|+
T Consensus 179 ---edPs-----l~ew~~~DfRIfcgdlgNevnd~vl~raf~K-fpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAm 249 (290)
T KOG0226|consen 179 ---EDPS-----LAEWDEDDFRIFCGDLGNEVNDDVLARAFKK-FPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAM 249 (290)
T ss_pred ---CCcc-----cccCccccceeecccccccccHHHHHHHHHh-ccchhhccccccccccccccceeeeecCHHHHHHHH
Confidence 1111 1111234588999999999999999999999 5888888888876 899999999999999999999
Q ss_pred H-hCCceeCCeeEEEeecC
Q 024696 234 N-CSGAVLGSLPIRVSPSK 251 (264)
Q Consensus 234 ~-l~g~~~~g~~l~v~~a~ 251 (264)
. |+|..++.+.|++.-+.
T Consensus 250 rem~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 250 REMNGKYVGSRPIKLRKSE 268 (290)
T ss_pred HhhcccccccchhHhhhhh
Confidence 8 99999999999887654
No 120
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.84 E-value=1.3e-08 Score=81.91 Aligned_cols=78 Identities=26% Similarity=0.331 Sum_probs=69.2
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcC-CCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEe
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTC-GQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 150 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~-G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~ 150 (264)
......+++..+|.-..+.++..+|.++ |.+..+++.+++. .|+|||||+|++++.|.-|-+ ||+..+.++-|.+.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 3455679999999999999999999988 7888888878775 479999999999999999998 99999999999888
Q ss_pred ec
Q 024696 151 PS 152 (264)
Q Consensus 151 ~s 152 (264)
+-
T Consensus 126 vm 127 (214)
T KOG4208|consen 126 VM 127 (214)
T ss_pred Ee
Confidence 85
No 121
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.83 E-value=1.3e-08 Score=81.97 Aligned_cols=80 Identities=24% Similarity=0.287 Sum_probs=72.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
....+++..+|..+.+.++..+|.++.|.|..+++.++. |+++|||||+|++.+.|.-|-+ ||+.-+.++-|.+.+-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 447899999999999999999999966788888887765 8999999999999999999999 9999999999999986
Q ss_pred CCC
Q 024696 251 KTP 253 (264)
Q Consensus 251 ~~~ 253 (264)
.|.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 655
No 122
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.1e-08 Score=88.49 Aligned_cols=81 Identities=20% Similarity=0.321 Sum_probs=74.3
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEe
Q 024696 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 248 (264)
Q Consensus 172 ~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~ 248 (264)
.++.+.|||--|++-++++||.-+|+. ||.|..|.+++|. |.+--||||+|++.+++.+|.- |++.-|.++.|.|.
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSr-FG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSR-FGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhh-cccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 457789999999999999999999999 5999999999986 6677799999999999999997 99999999999999
Q ss_pred ecCCC
Q 024696 249 PSKTP 253 (264)
Q Consensus 249 ~a~~~ 253 (264)
|+..-
T Consensus 315 FSQSV 319 (479)
T KOG0415|consen 315 FSQSV 319 (479)
T ss_pred hhhhh
Confidence 97653
No 123
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.78 E-value=3.5e-09 Score=92.42 Aligned_cols=173 Identities=21% Similarity=0.218 Sum_probs=128.9
Q ss_pred CcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC-----CCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEeec
Q 024696 78 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-----SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 152 (264)
Q Consensus 78 ~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~-----~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~s 152 (264)
...|.|.||.++++.++++.+|...|.|.++.++.... .....|||.|.+...+..|.+|.+.++-++.|.|-+.
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 44899999999999999999999999999999998543 2367999999999999999999999998888888764
Q ss_pred CCCCCCC-----------------CCC--C------------------CCCCccc-----cccCCceEEEeCCCCCCCHH
Q 024696 153 KTAIAPV-----------------NPT--F------------------LPRSEDE-----REMCSRTIYCTNIDKKVTQG 190 (264)
Q Consensus 153 ~~~~~~~-----------------~~~--~------------------~~~~~~~-----~~~~~~~l~V~nL~~~~te~ 190 (264)
-....+. .+. . .|....+ -+...++++|++|+......
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 3211110 000 0 0000000 02234789999999999999
Q ss_pred HHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecCCC
Q 024696 191 DIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKTP 253 (264)
Q Consensus 191 ~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~a~~~ 253 (264)
++.+.|.. ||+|.+..+--.. ..-+|.++|....+...|+.++|+.+.-+......-+|.
T Consensus 167 e~~e~f~r-~Gev~ya~~ask~--~s~~c~~sf~~qts~~halr~~gre~k~qhsr~ai~kP~ 226 (479)
T KOG4676|consen 167 ESGESFER-KGEVSYAHTASKS--RSSSCSHSFRKQTSSKHALRSHGRERKRQHSRRAIIKPH 226 (479)
T ss_pred hhhhhhhh-cchhhhhhhhccC--CCcchhhhHhhhhhHHHHHHhcchhhhhhhhhhhhcCcc
Confidence 99999998 6999887664322 233778999999999999998998887555554444444
No 124
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.8e-08 Score=87.14 Aligned_cols=79 Identities=23% Similarity=0.480 Sum_probs=72.5
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHH-HhcCCCCCCcceEEeec
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAAL-SLAGTMLGFYPVRVLPS 152 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~--s~G~afV~F~~~~~a~~Ai-~l~~~~~~g~~l~V~~s 152 (264)
.....|||..|.+-++.++|.-+|+.||.|.+|.+++|..+ +..||||+|.+.+++.+|. +|++..+..++|.|.+|
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 35678999999999999999999999999999999999865 5789999999999999998 59999999999999997
Q ss_pred CC
Q 024696 153 KT 154 (264)
Q Consensus 153 ~~ 154 (264)
+.
T Consensus 317 QS 318 (479)
T KOG0415|consen 317 QS 318 (479)
T ss_pred hh
Confidence 54
No 125
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.72 E-value=1.5e-07 Score=76.71 Aligned_cols=82 Identities=18% Similarity=0.262 Sum_probs=67.4
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEec-cCC--CceeEEEEEECCHHHHHHHHH-hCCcee---CCeeE
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLG-DYQ--HSTRIAFVEFAMAESAIAALN-CSGAVL---GSLPI 245 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~-~~~--~~~g~afV~f~~~~~A~~Ai~-l~g~~~---~g~~l 245 (264)
...+||||.+||.++...||..+|..| -.-+.+.+.. +++ .++-+||++|.+..+|+.|++ |||..| .+.+|
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f-~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRF-HGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccC-CCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 356999999999999999999999996 4445554443 332 366799999999999999999 999988 47899
Q ss_pred EEeecCCCCC
Q 024696 246 RVSPSKTPVR 255 (264)
Q Consensus 246 ~v~~a~~~~~ 255 (264)
+++++|...+
T Consensus 111 hiElAKSNtK 120 (284)
T KOG1457|consen 111 HIELAKSNTK 120 (284)
T ss_pred EeeehhcCcc
Confidence 9999987654
No 126
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.68 E-value=5.9e-08 Score=88.55 Aligned_cols=82 Identities=16% Similarity=0.262 Sum_probs=73.8
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCC--CceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ--HSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 249 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~--~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~ 249 (264)
..++.+||.+|...+...+|+.+|++ ||+|...+++.+.. ..+-|+||++.+.++|.+||+ ||-.++.|+-|.|..
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSK-yGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSK-YGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHH-hcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 35678999999999999999999999 79999999998752 356699999999999999998 999999999999999
Q ss_pred cCCCCC
Q 024696 250 SKTPVR 255 (264)
Q Consensus 250 a~~~~~ 255 (264)
+++-+.
T Consensus 482 aKNEp~ 487 (940)
T KOG4661|consen 482 AKNEPG 487 (940)
T ss_pred cccCcc
Confidence 987654
No 127
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.68 E-value=5.6e-08 Score=90.47 Aligned_cols=172 Identities=13% Similarity=0.021 Sum_probs=128.8
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCC-CCC-ceEEEEEecCHHHHHHHHHhcCCCCCCcceEEeecC
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSV-LRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 153 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~~s-~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~s~ 153 (264)
.+.+.+-+.+.+++.++.|++++|... .|..+.+..+. +.+ .|.++|+|....++.+|++.|...+-.|.+.+....
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPG 387 (944)
T ss_pred chhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCC
Confidence 566778899999999999999999754 34445555443 223 599999999999999999988888888999887754
Q ss_pred CCCCCCCCC------------------CCCCCc-------cccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEE-EE
Q 024696 154 TAIAPVNPT------------------FLPRSE-------DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQR-LR 207 (264)
Q Consensus 154 ~~~~~~~~~------------------~~~~~~-------~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~-v~ 207 (264)
.......+. ..++.. ....+.+.+|||..||..+++.++.+.|... ..|++ |.
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~-~~Ved~I~ 466 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGA-AAVEDFIE 466 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhh-hhhhheeE
Confidence 322111111 011110 0113456799999999999999999999986 55555 77
Q ss_pred EeccC-CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q 024696 208 LLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 249 (264)
Q Consensus 208 i~~~~-~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~ 249 (264)
|-+.+ ++-++.|||.|...+++.+|.. .+.+..+.+.|+|.-
T Consensus 467 lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 467 LTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred eccCCcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 77655 6788899999999999999998 777888888888864
No 128
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.67 E-value=1.9e-08 Score=87.69 Aligned_cols=81 Identities=21% Similarity=0.285 Sum_probs=74.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecC
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSK 251 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~a~ 251 (264)
..+++||++|+.+++++.|++.|.+ ||+|.+|.+++|+ +.++||+||+|++.+....++....+.+.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~-~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQ-FGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcc-cCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceecc
Confidence 3489999999999999999999999 6999999999987 679999999999999999999888899999999999988
Q ss_pred CCCC
Q 024696 252 TPVR 255 (264)
Q Consensus 252 ~~~~ 255 (264)
|.-.
T Consensus 84 ~r~~ 87 (311)
T KOG4205|consen 84 SRED 87 (311)
T ss_pred Cccc
Confidence 7743
No 129
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.67 E-value=1e-07 Score=87.10 Aligned_cols=83 Identities=22% Similarity=0.322 Sum_probs=74.2
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~--s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
...+.+||.+|+..+.-.+|+++|++||.|.-.+++.+..+ .+.|+||++.+.++|.++|+ |+...+.|+-|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34567999999999999999999999999999999987653 47899999999999999998 9999999999999998
Q ss_pred CCCCCC
Q 024696 153 KTAIAP 158 (264)
Q Consensus 153 ~~~~~~ 158 (264)
+..+..
T Consensus 483 KNEp~G 488 (940)
T KOG4661|consen 483 KNEPGG 488 (940)
T ss_pred ccCccc
Confidence 775544
No 130
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.66 E-value=1.1e-07 Score=79.82 Aligned_cols=80 Identities=25% Similarity=0.360 Sum_probs=73.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 251 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~ 251 (264)
...+|+|.|||..++++||+++|.+ ||.++.+-+..++ |.+.|.|-|.|+..++|..|++ ++|..+.|+.+++....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~-~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAE-FGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHH-hccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 4478999999999999999999999 6999999999987 8899999999999999999998 99999999999998865
Q ss_pred CCC
Q 024696 252 TPV 254 (264)
Q Consensus 252 ~~~ 254 (264)
++.
T Consensus 161 ~~~ 163 (243)
T KOG0533|consen 161 SPS 163 (243)
T ss_pred Ccc
Confidence 543
No 131
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.60 E-value=3.8e-09 Score=93.08 Aligned_cols=150 Identities=20% Similarity=0.260 Sum_probs=117.5
Q ss_pred cEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCC-CCCcceEEeecCCCC
Q 024696 79 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTM-LGFYPVRVLPSKTAI 156 (264)
Q Consensus 79 ~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~-~~g~~l~V~~s~~~~ 156 (264)
.++|++||.+..+..++...|.....-..-.++-. .||+||.+.+...|.+|++ ++|+. +.|+++.+..+-.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k----~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~-- 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK----SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP-- 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee----cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh--
Confidence 36899999999999999999985421111111111 2899999999999999998 88866 8899999988631
Q ss_pred CCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-h
Q 024696 157 APVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-C 235 (264)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l 235 (264)
... .++.+-|.|+|+..-++-|..+..+ ||.|+.|...... ......-|+|.+.+.++.|+. +
T Consensus 76 ---------kkq-----rsrk~Qirnippql~wevld~Ll~q-yg~ve~~eqvnt~-~etavvnvty~~~~~~~~ai~kl 139 (584)
T KOG2193|consen 76 ---------KKQ-----RSRKIQIRNIPPQLQWEVLDSLLAQ-YGTVENCEQVNTD-SETAVVNVTYSAQQQHRQAIHKL 139 (584)
T ss_pred ---------HHH-----HhhhhhHhcCCHHHHHHHHHHHHhc-cCCHhHhhhhccc-hHHHHHHHHHHHHHHHHHHHHhh
Confidence 111 1266889999999999999999998 8999999765422 112245578999999999998 9
Q ss_pred CCceeCCeeEEEeec
Q 024696 236 SGAVLGSLPIRVSPS 250 (264)
Q Consensus 236 ~g~~~~g~~l~v~~a 250 (264)
+|+.+.+..+++.|-
T Consensus 140 ~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 140 NGPQLENQHLKVGYI 154 (584)
T ss_pred cchHhhhhhhhcccC
Confidence 999999999999983
No 132
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.60 E-value=1.4e-07 Score=81.34 Aligned_cols=79 Identities=19% Similarity=0.291 Sum_probs=71.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEE--------EEEeccC-CCceeEEEEEECCHHHHHHHHH-hCCceeCCe
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQR--------LRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSL 243 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~--------v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~ 243 (264)
.++.|||.|||.++|.+++.++|++ +|.|.. |++.++. |+.+|=|.+.|.-.+++..|++ |++..++|+
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sK-cGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSK-CGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHh-cceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 4467999999999999999999999 687743 7888876 8999999999999999999999 999999999
Q ss_pred eEEEeecCCC
Q 024696 244 PIRVSPSKTP 253 (264)
Q Consensus 244 ~l~v~~a~~~ 253 (264)
.|+|+.|+-.
T Consensus 212 ~~rVerAkfq 221 (382)
T KOG1548|consen 212 KLRVERAKFQ 221 (382)
T ss_pred EEEEehhhhh
Confidence 9999998754
No 133
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=98.59 E-value=1.5e-07 Score=83.22 Aligned_cols=121 Identities=26% Similarity=0.387 Sum_probs=89.7
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhhcccccccCCCCCCccccccccccccccCCCCcEEEEcCCCCcCC
Q 024696 12 LEGYVCPLLLILSCFKLLVWLLVWYFLSLIKVLCLFNTAFQKRNGYSQGKRRMNCRTSNAQQDEVIRRTVYVSDIDQQVT 91 (264)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~nLp~~~t 91 (264)
-|||| ||-+|+|+-+..-+..-|-. +.-+|+ +.. ....+..+.+-++.. .......++..+++|.+.|||.+-.
T Consensus 171 keGyV-pv~~vaSFKKvK~LTrd~~~--va~ALr-~S~-kL~vseDgkKVrRis-Plp~~~~eel~srtivaenLP~Dh~ 244 (484)
T KOG1855|consen 171 KEGYV-PVKLVASFKKVKALTRDWKL--VADALR-KSS-KLEVSEDGKKVRRIS-PLPEFDEEELPSRTIVAENLPLDHS 244 (484)
T ss_pred CCCce-eeehhhhHHHHHHHhhhhHH--HHHHHh-hcc-eEEEccCCceeeecC-CCCCccccccccceEEEecCCcchH
Confidence 38999 99999999999988888877 445565 222 222223333222222 2233334556899999999999999
Q ss_pred HHHHHHHhhcCCCeeEEEEecC---CC----C--------CceEEEEEecCHHHHHHHHH-hc
Q 024696 92 EEQLATLFLTCGQVVDCRICGD---PN----S--------VLRFAFVEFTDEEGARAALS-LA 138 (264)
Q Consensus 92 e~~L~~~F~~~G~I~~v~i~~~---~~----~--------s~G~afV~F~~~~~a~~Ai~-l~ 138 (264)
-+.|.++|..+|.|..|+|+.. +. . .+-+|+|+|...+.|.+|.+ ++
T Consensus 245 ~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 245 YENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred HHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 9999999999999999999876 21 0 25689999999999999999 53
No 134
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.59 E-value=1.1e-07 Score=86.00 Aligned_cols=77 Identities=18% Similarity=0.285 Sum_probs=67.1
Q ss_pred CcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEeecCC
Q 024696 78 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 154 (264)
Q Consensus 78 ~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~--~~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~s~~ 154 (264)
..+|||+|||.++++.+|+++|..||+|+...|.... +.+..||||+|.+.+++..|++-+...++++++.|+..+.
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 3449999999999999999999999999988777644 3334899999999999999999778889999999988654
No 135
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.57 E-value=1.5e-07 Score=79.18 Aligned_cols=81 Identities=31% Similarity=0.463 Sum_probs=74.2
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEee
Q 024696 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSP 249 (264)
Q Consensus 172 ~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~ 249 (264)
......+||+|+.+.++.+++...|+. ||.|..+.++.|. ++++||+||+|.+.+.+.+|+.|+|..+.|+.+.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~-Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFES-CGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeec-cCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeee
Confidence 345589999999999999999999998 7999999999987 6799999999999999999999999999999999999
Q ss_pred cCCC
Q 024696 250 SKTP 253 (264)
Q Consensus 250 a~~~ 253 (264)
.+..
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 7655
No 136
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.57 E-value=2.3e-07 Score=86.73 Aligned_cols=86 Identities=17% Similarity=0.271 Sum_probs=74.8
Q ss_pred CCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-----CCceeEEEEEECCHHHHHHHHH-hCCce
Q 024696 166 RSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-----QHSTRIAFVEFAMAESAIAALN-CSGAV 239 (264)
Q Consensus 166 ~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-----~~~~g~afV~f~~~~~A~~Ai~-l~g~~ 239 (264)
.+.+...+..+.+||+||++.++++.|...|.. ||.|..++|+-.. ...+.||||.|.+..+|+.|+. |+|..
T Consensus 165 gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGr-fgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~i 243 (877)
T KOG0151|consen 165 GSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGR-FGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGII 243 (877)
T ss_pred CcCCCCCCcccceeeecCCccccHHHHHHHhcc-cCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhccee
Confidence 334444566789999999999999999999999 6999999988643 2467799999999999999998 99999
Q ss_pred eCCeeEEEeecCC
Q 024696 240 LGSLPIRVSPSKT 252 (264)
Q Consensus 240 ~~g~~l~v~~a~~ 252 (264)
+.+..+++.|+++
T Consensus 244 v~~~e~K~gWgk~ 256 (877)
T KOG0151|consen 244 VMEYEMKLGWGKA 256 (877)
T ss_pred eeeeeeeeccccc
Confidence 9999999999953
No 137
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.56 E-value=2.8e-07 Score=77.50 Aligned_cols=80 Identities=24% Similarity=0.287 Sum_probs=71.8
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEee
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 151 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~-~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~ 151 (264)
.+..+.+|+|.|||+.++++||+++|..||.+..+-+..++. .+.|.|-|.|...++|.+|++ +++..+.|+++.+..
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 344456799999999999999999999999999999999885 678999999999999999998 999889999998877
Q ss_pred cC
Q 024696 152 SK 153 (264)
Q Consensus 152 s~ 153 (264)
..
T Consensus 159 i~ 160 (243)
T KOG0533|consen 159 IS 160 (243)
T ss_pred ec
Confidence 53
No 138
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.56 E-value=2.5e-08 Score=80.99 Aligned_cols=74 Identities=20% Similarity=0.194 Sum_probs=68.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 249 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~ 249 (264)
..+||||+|+...++|+-|.++|-+. |.|.+|.|+.+. ++.+ ||||.|.+..+..-|++ +||..+.+..+++++
T Consensus 8 ~drtl~v~n~~~~v~eelL~Elfiqa-GPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~ 83 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQA-GPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL 83 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhcc-CceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccc
Confidence 34899999999999999999999995 999999999876 5566 99999999999999999 999999999998887
No 139
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.53 E-value=2.1e-07 Score=78.30 Aligned_cols=83 Identities=28% Similarity=0.350 Sum_probs=76.0
Q ss_pred ccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEe
Q 024696 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVL 150 (264)
Q Consensus 73 ~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~ 150 (264)
....+.+.+||+|+.+.++.+++...|+.||.|..+.+..|.. +++|||||+|.+.+.+..|+.||+..+.|+.+.|.
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVT 175 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceee
Confidence 4566788999999999999999999999999999999998875 47999999999999999999999999999999999
Q ss_pred ecCCC
Q 024696 151 PSKTA 155 (264)
Q Consensus 151 ~s~~~ 155 (264)
+....
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 97665
No 140
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.52 E-value=3.1e-07 Score=83.17 Aligned_cols=80 Identities=19% Similarity=0.299 Sum_probs=69.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecCC
Q 024696 175 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKT 252 (264)
Q Consensus 175 ~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~a~~ 252 (264)
..+|||.|||.++++++|.++|.+ ||.|+...|.... ++...||||+|.+.++++.|++.+-..++|+++.|+-.++
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~-FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQ-FGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhh-cccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEeccc
Confidence 356999999999999999999999 6999998887644 3433899999999999999999778999999999999888
Q ss_pred CCC
Q 024696 253 PVR 255 (264)
Q Consensus 253 ~~~ 255 (264)
..+
T Consensus 367 ~~~ 369 (419)
T KOG0116|consen 367 GFR 369 (419)
T ss_pred ccc
Confidence 544
No 141
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.47 E-value=2e-07 Score=76.77 Aligned_cols=71 Identities=20% Similarity=0.348 Sum_probs=65.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecCCC
Q 024696 176 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTP 253 (264)
Q Consensus 176 ~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~~~ 253 (264)
..+|||+||+.+.+.+|..+|.. ||.+.++.+.. ||+||+|.+..+|..|+. +||..++|-.+.|.|++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~-yg~~~d~~mk~------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKG-YGKIPDADMKN------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhh-ccccccceeec------ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 46899999999999999999999 79999998843 589999999999999998 9999999999999999863
No 142
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.46 E-value=2.4e-07 Score=84.58 Aligned_cols=76 Identities=24% Similarity=0.365 Sum_probs=65.9
Q ss_pred CccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeE
Q 024696 167 SEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPI 245 (264)
Q Consensus 167 ~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l 245 (264)
..++.....++|+|-|||..+++++|+.+|+. ||+|..|+.-.. .+|..||+|.|.-+|+.|++ |++..+.|+.|
T Consensus 67 np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~-yGeir~ir~t~~---~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~ 142 (549)
T KOG4660|consen 67 NPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGA-YGEIREIRETPN---KRGIVFVEFYDVRDAERALKALNRREIAGKRI 142 (549)
T ss_pred CCCcccCccceEEEEecCCcCCHHHHHHHHHh-hcchhhhhcccc---cCceEEEEEeehHhHHHHHHHHHHHHhhhhhh
Confidence 33444556799999999999999999999998 799999765443 45799999999999999998 99999999999
Q ss_pred E
Q 024696 246 R 246 (264)
Q Consensus 246 ~ 246 (264)
+
T Consensus 143 k 143 (549)
T KOG4660|consen 143 K 143 (549)
T ss_pred c
Confidence 8
No 143
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.44 E-value=2e-06 Score=62.27 Aligned_cols=75 Identities=21% Similarity=0.202 Sum_probs=61.7
Q ss_pred cEEEEcCCCCcCCHHHHHHHhhc--CCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCC----CcceEE
Q 024696 79 RTVYVSDIDQQVTEEQLATLFLT--CGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLG----FYPVRV 149 (264)
Q Consensus 79 ~~v~V~nLp~~~te~~L~~~F~~--~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~----g~~l~V 149 (264)
.||+|+|||...|.++|.+++.. .|...-+.++-|-. .+.|||||.|.+++.|.+..+ ++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 58999999999999999999874 36667777777754 468999999999999999998 9998864 456677
Q ss_pred eecC
Q 024696 150 LPSK 153 (264)
Q Consensus 150 ~~s~ 153 (264)
.+|+
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 7764
No 144
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.36 E-value=1.6e-06 Score=81.25 Aligned_cols=89 Identities=22% Similarity=0.329 Sum_probs=75.7
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC-----CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceE
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-----SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVR 148 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~-----~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~ 148 (264)
+..+..+||+||++.++++.|...|..||+|..++++..+. ..+-++||-|-+..+|++|++ |+|+.+.+.+++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 34566799999999999999999999999999999987653 235699999999999999998 999999999999
Q ss_pred EeecCCCCCCCCCCC
Q 024696 149 VLPSKTAIAPVNPTF 163 (264)
Q Consensus 149 V~~s~~~~~~~~~~~ 163 (264)
+.|++.-..+..+.+
T Consensus 251 ~gWgk~V~ip~~p~~ 265 (877)
T KOG0151|consen 251 LGWGKAVPIPNIPIY 265 (877)
T ss_pred eccccccccCCcccc
Confidence 999976544444433
No 145
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.34 E-value=7.2e-07 Score=74.14 Aligned_cols=79 Identities=19% Similarity=0.343 Sum_probs=71.6
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEe
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 150 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~ 150 (264)
.+.+...||.|.|..+++++-|-..|..|......++++|+. .++||+||.|.+..++..|+. |+|++++.++|+..
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 345667899999999999999999999999988889999885 579999999999999999997 99999999999887
Q ss_pred ec
Q 024696 151 PS 152 (264)
Q Consensus 151 ~s 152 (264)
.+
T Consensus 266 kS 267 (290)
T KOG0226|consen 266 KS 267 (290)
T ss_pred hh
Confidence 65
No 146
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.33 E-value=5.4e-06 Score=60.05 Aligned_cols=78 Identities=22% Similarity=0.239 Sum_probs=65.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhc-CCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeC----CeeEEE
Q 024696 176 RTIYCTNIDKKVTQGDIKLFFESV-CGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLG----SLPIRV 247 (264)
Q Consensus 176 ~~l~V~nL~~~~te~~L~~~F~~~-~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~----g~~l~v 247 (264)
+||.|.|+|...|.++|.+++... .|....+.++.|. +-..|||||.|.++++|.+-.+ ++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 689999999999999999988764 3566777777775 4589999999999999999998 9999885 467788
Q ss_pred eecCCC
Q 024696 248 SPSKTP 253 (264)
Q Consensus 248 ~~a~~~ 253 (264)
.||+-.
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 887654
No 147
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.29 E-value=3.7e-08 Score=93.60 Aligned_cols=161 Identities=17% Similarity=0.151 Sum_probs=121.2
Q ss_pred CCCcEEEEcCCCCcCCHH-HHHHHhhcCCCeeEEEEecC-CCCC-ceEEEEEecCHHHHHHHHHhcCCCCCCcceEEeec
Q 024696 76 VIRRTVYVSDIDQQVTEE-QLATLFLTCGQVVDCRICGD-PNSV-LRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 152 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~-~L~~~F~~~G~I~~v~i~~~-~~~s-~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~s 152 (264)
...+...+.++.+...+. ..+..|..+|.|+.|++... .+.+ ..+++++++...++..|....+.-+.++...|..+
T Consensus 569 ~~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 569 LERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccccccccCCccccCCCC
Confidence 345567788887776665 56788899999999988763 2333 33999999999999999888888899998888887
Q ss_pred CCCCCCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEe--ccCCCceeEEEEEECCHHHHH
Q 024696 153 KTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLL--GDYQHSTRIAFVEFAMAESAI 230 (264)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~--~~~~~~~g~afV~f~~~~~A~ 230 (264)
+...........+....+ ..++||+||+..+.+++|...|.. +|.+..+++. .+.++.+|+|+++|.+.++|.
T Consensus 649 d~~~~~~~~kvs~n~~R~----~~~~fvsnl~~~~~~~dl~~~~~~-~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~ 723 (881)
T KOG0128|consen 649 DAEEKEENFKVSPNEIRD----LIKIFVSNLSPKMSEEDLSERFSP-SGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAG 723 (881)
T ss_pred CchhhhhccCcCchHHHH----HHHHHHhhcchhhcCchhhhhcCc-cchhhhHHHHHHhhccccccceeeEeecCCchh
Confidence 654433333333222222 268999999999999999999998 6987776655 455789999999999999999
Q ss_pred HHHH-hCCceeC
Q 024696 231 AALN-CSGAVLG 241 (264)
Q Consensus 231 ~Ai~-l~g~~~~ 241 (264)
+|+. ..+..++
T Consensus 724 aaV~f~d~~~~g 735 (881)
T KOG0128|consen 724 AAVAFRDSCFFG 735 (881)
T ss_pred hhhhhhhhhhhh
Confidence 9998 4444433
No 148
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.23 E-value=5e-06 Score=57.75 Aligned_cols=67 Identities=24% Similarity=0.237 Sum_probs=46.1
Q ss_pred ceEEEeCCCCCCCHHHHH----HHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 176 RTIYCTNIDKKVTQGDIK----LFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 176 ~~l~V~nL~~~~te~~L~----~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
..|+|.|||.+.+...++ +++...-|+|..|. .+.|+|.|.+++.|.+|.. |+|..+.|++|.|+|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 579999999998876654 56556334787773 1589999999999999999 9999999999999997
No 149
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.06 E-value=2.7e-05 Score=54.17 Aligned_cols=66 Identities=23% Similarity=0.272 Sum_probs=45.9
Q ss_pred cEEEEcCCCCcCCHHHH----HHHhhcCCC-eeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 79 RTVYVSDIDQQVTEEQL----ATLFLTCGQ-VVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 79 ~~v~V~nLp~~~te~~L----~~~F~~~G~-I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
..|+|.|||.+.+...| +.++..||. |.+| .+ +.|.|.|.+.+.|.+|.+ |+|....|++|.|.++
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-----~~---~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-----SG---GTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------T---T-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-----eC---CEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 35999999999887665 455558874 4433 12 799999999999999998 9999999999999997
No 150
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.05 E-value=2.3e-05 Score=57.91 Aligned_cols=68 Identities=19% Similarity=0.258 Sum_probs=42.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-h--C---CceeCCeeEEEe
Q 024696 176 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-C--S---GAVLGSLPIRVS 248 (264)
Q Consensus 176 ~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l--~---g~~~~g~~l~v~ 248 (264)
..|.|.+++..++.++|++.|++ ||.|.+|.+.... ..|+|.|.+.++|+.|++ + . +..+.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~-~g~V~yVD~~~G~----~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQ-FGEVAYVDFSRGD----TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-S-S--EEEEE--TT-----SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHh-cCCcceEEecCCC----CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 56889999999999999999999 6999999997744 389999999999999996 4 3 345566555443
No 151
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.95 E-value=3.1e-05 Score=57.23 Aligned_cols=54 Identities=20% Similarity=0.312 Sum_probs=36.8
Q ss_pred cEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH
Q 024696 79 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS 136 (264)
Q Consensus 79 ~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~ 136 (264)
..|.+.+++.+++.++|++.|+.||.|..|.+..... .|||.|.++++|+.|++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~----~g~VRf~~~~~A~~a~~ 55 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT----EGYVRFKTPEAAQKALE 55 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S----EEEEEESS---HHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC----EEEEEECCcchHHHHHH
Confidence 3588999999999999999999999999999887653 99999999999999997
No 152
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.84 E-value=1.7e-05 Score=69.23 Aligned_cols=82 Identities=23% Similarity=0.316 Sum_probs=70.8
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEE--------EEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCcee
Q 024696 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQR--------LRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVL 240 (264)
Q Consensus 172 ~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~--------v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~ 240 (264)
.....++||-++|..++++++.++|.+ +|.|.. |.|.++. +.+|+-|.|+|+|..+|+.|+. +++..+
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~q-cg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQ-CGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhh-cceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 345579999999999999999999999 688743 5555555 6799999999999999999999 999999
Q ss_pred CCeeEEEeecCCCC
Q 024696 241 GSLPIRVSPSKTPV 254 (264)
Q Consensus 241 ~g~~l~v~~a~~~~ 254 (264)
.|.+|+|..+.-.+
T Consensus 142 ~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 142 CGNTIKVSLAERRT 155 (351)
T ss_pred cCCCchhhhhhhcc
Confidence 99999999986553
No 153
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.82 E-value=6.4e-05 Score=70.64 Aligned_cols=75 Identities=24% Similarity=0.259 Sum_probs=64.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCce-EEEEEec-cCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEV-QRLRLLG-DYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 249 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V-~~v~i~~-~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~ 249 (264)
+.+.|-+.|+|++++-+||.++|.. |-.+ .+|.+.. |+|.++|-|.|.|++.++|..|.. ++++.|+++++++..
T Consensus 866 Gp~V~~~~n~Pf~v~l~dI~~FF~d-Y~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 866 GPRVLSCNNFPFDVTLEDIVEFFND-YEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCeEEEecCCCccccHHHHHHHhcc-cccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3458899999999999999999998 5543 5566555 558999999999999999999998 999999999998853
No 154
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.77 E-value=9.1e-05 Score=47.58 Aligned_cols=52 Identities=19% Similarity=0.388 Sum_probs=42.9
Q ss_pred cEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH
Q 024696 79 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAAL 135 (264)
Q Consensus 79 ~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai 135 (264)
+.|-|.|.+.+. .+++...|.+||+|..+.+.... -..||.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~-~~~vl~~F~~fGeI~~~~~~~~~----~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDL-AEEVLEHFASFGEIVDIYVPEST----NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchH-HHHHHHHHHhcCCEEEEEcCCCC----cEEEEEECCHHHHHhhC
Confidence 568899998764 46677799999999998887333 49999999999999985
No 155
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.70 E-value=0.00023 Score=55.03 Aligned_cols=77 Identities=21% Similarity=0.280 Sum_probs=54.1
Q ss_pred ccCCceEEEeCCCC------CCCH---HHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHHhCCceeCC
Q 024696 172 EMCSRTIYCTNIDK------KVTQ---GDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGS 242 (264)
Q Consensus 172 ~~~~~~l~V~nL~~------~~te---~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g 242 (264)
.++..||.|.=+.+ ..++ .+|.+.|.+ ||+|.-+++..+ .-+|+|.+-++|.+|++++|.+++|
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~-~GevvLvRfv~~------~mwVTF~dg~sALaals~dg~~v~g 96 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQ-YGEVVLVRFVGD------TMWVTFRDGQSALAALSLDGIQVNG 96 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHC-CS-ECEEEEETT------CEEEEESSCHHHHHHHHGCCSEETT
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHh-CCceEEEEEeCC------eEEEEECccHHHHHHHccCCcEECC
Confidence 34557787776651 2332 367778887 799999988765 5899999999999999999999999
Q ss_pred eeEEEeecCCCCC
Q 024696 243 LPIRVSPSKTPVR 255 (264)
Q Consensus 243 ~~l~v~~a~~~~~ 255 (264)
+.|+|+...|.+-
T Consensus 97 ~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 97 RTLKIRLKTPDWL 109 (146)
T ss_dssp EEEEEEE------
T ss_pred EEEEEEeCCccHH
Confidence 9999999877654
No 156
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.62 E-value=0.00034 Score=50.99 Aligned_cols=77 Identities=14% Similarity=0.176 Sum_probs=53.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhhcCCceEEEE-Eecc-------C-CCceeEEEEEECCHHHHHHHHHhCCceeCCe-e
Q 024696 175 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLR-LLGD-------Y-QHSTRIAFVEFAMAESAIAALNCSGAVLGSL-P 244 (264)
Q Consensus 175 ~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~-i~~~-------~-~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~-~ 244 (264)
...|.|-+.|+. ....+.+.|++ ||.|.+.. +.++ + ....++..|+|+++.+|++|+..||..+.|. -
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~-~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSS-FGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHC-CS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHh-cceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 367888899988 56778889998 69987764 1111 1 1133599999999999999999999999875 6
Q ss_pred EEEeecCCC
Q 024696 245 IRVSPSKTP 253 (264)
Q Consensus 245 l~v~~a~~~ 253 (264)
+-|.+.++.
T Consensus 84 vGV~~~~~~ 92 (100)
T PF05172_consen 84 VGVKPCDPA 92 (100)
T ss_dssp EEEEE-HHH
T ss_pred EEEEEcHHh
Confidence 668887654
No 157
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.61 E-value=0.00031 Score=51.21 Aligned_cols=75 Identities=19% Similarity=0.224 Sum_probs=52.7
Q ss_pred CCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEE-EecC-------C-CCCceEEEEEecCHHHHHHHHHhcCCCCCCcce
Q 024696 77 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCR-ICGD-------P-NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPV 147 (264)
Q Consensus 77 ~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~-i~~~-------~-~~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l 147 (264)
...-|.|-|.|.. ....+.+.|++||+|.+.. ..++ + .......-|+|.+..+|.+|+..||..+.|.-+
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~m 83 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLM 83 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEE
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEE
Confidence 4556999999987 7788999999999997764 1110 0 012259999999999999999999999988644
Q ss_pred -EEeec
Q 024696 148 -RVLPS 152 (264)
Q Consensus 148 -~V~~s 152 (264)
-|.+.
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 46665
No 158
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.57 E-value=0.00019 Score=62.27 Aligned_cols=77 Identities=19% Similarity=0.356 Sum_probs=63.1
Q ss_pred CcEEEEcCCCCcCCHHHH------HHHhhcCCCeeEEEEecCCC---CCceEE--EEEecCHHHHHHHHH-hcCCCCCCc
Q 024696 78 RRTVYVSDIDQQVTEEQL------ATLFLTCGQVVDCRICGDPN---SVLRFA--FVEFTDEEGARAALS-LAGTMLGFY 145 (264)
Q Consensus 78 ~~~v~V~nLp~~~te~~L------~~~F~~~G~I~~v~i~~~~~---~s~G~a--fV~F~~~~~a~~Ai~-l~~~~~~g~ 145 (264)
..-+||-+||+.+-.+++ .++|.+||.|..|.+-+... +..+.+ ||.|.+.++|.+||+ .+|..+.||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 344999999998877763 67999999999888876542 123445 999999999999998 999999999
Q ss_pred ceEEeecCC
Q 024696 146 PVRVLPSKT 154 (264)
Q Consensus 146 ~l~V~~s~~ 154 (264)
.|+..+..+
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 999998754
No 159
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.51 E-value=0.00013 Score=63.75 Aligned_cols=80 Identities=25% Similarity=0.346 Sum_probs=69.0
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCee--------EEEEecCCCC--CceEEEEEecCHHHHHHHHH-hcCCCCC
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVV--------DCRICGDPNS--VLRFAFVEFTDEEGARAALS-LAGTMLG 143 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~--------~v~i~~~~~~--s~G~afV~F~~~~~a~~Ai~-l~~~~~~ 143 (264)
....-+|||-++|..+++++|.++|.++|.|. .|.+.+++.+ +||-|.|.|.+...|+.|+. +++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 45667899999999999999999999999874 2556666643 68999999999999999999 9999999
Q ss_pred CcceEEeecCC
Q 024696 144 FYPVRVLPSKT 154 (264)
Q Consensus 144 g~~l~V~~s~~ 154 (264)
+..|+|..+..
T Consensus 143 gn~ikvs~a~~ 153 (351)
T KOG1995|consen 143 GNTIKVSLAER 153 (351)
T ss_pred CCCchhhhhhh
Confidence 99999987643
No 160
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.41 E-value=0.00051 Score=58.56 Aligned_cols=61 Identities=25% Similarity=0.258 Sum_probs=51.8
Q ss_pred HHHHHHHhhhcCCceEEEEEeccCCCc---eeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 189 QGDIKLFFESVCGEVQRLRLLGDYQHS---TRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 189 e~~L~~~F~~~~G~V~~v~i~~~~~~~---~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
++++++-+.+ ||+|..|.|+-+++.+ .--.||+|+..++|.+|+- |||..|+|+.++..|-
T Consensus 300 ede~keEceK-yg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEK-YGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHh-hcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 4678889999 8999999988876432 2368999999999999997 9999999999987763
No 161
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.38 E-value=0.00062 Score=43.68 Aligned_cols=52 Identities=17% Similarity=0.284 Sum_probs=41.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHH
Q 024696 176 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAAL 233 (264)
Q Consensus 176 ~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai 233 (264)
+.|-|.+.++...+ ++...|.+ +|+|.++.+... ..+.+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~-fGeI~~~~~~~~----~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFAS-FGEIVDIYVPES----TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHh-cCCEEEEEcCCC----CcEEEEEECCHHHHHhhC
Confidence 57889999887654 45558888 699999988632 349999999999999985
No 162
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.36 E-value=0.00055 Score=59.43 Aligned_cols=76 Identities=14% Similarity=0.367 Sum_probs=62.0
Q ss_pred ceEEEeCCCCCCCHHHH------HHHhhhcCCceEEEEEeccC---CCcee--EEEEEECCHHHHHHHHH-hCCceeCCe
Q 024696 176 RTIYCTNIDKKVTQGDI------KLFFESVCGEVQRLRLLGDY---QHSTR--IAFVEFAMAESAIAALN-CSGAVLGSL 243 (264)
Q Consensus 176 ~~l~V~nL~~~~te~~L------~~~F~~~~G~V~~v~i~~~~---~~~~g--~afV~f~~~~~A~~Ai~-l~g~~~~g~ 243 (264)
+.+||-+||+.+-.|++ .++|.+ ||.|..|.+-+.. +.-.+ =.+|+|.+.++|.+|+. .+|..+.|+
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQ-yGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQ-YGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhh-ccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 67999999998776663 468999 7999999887643 11122 24999999999999998 999999999
Q ss_pred eEEEeecCC
Q 024696 244 PIRVSPSKT 252 (264)
Q Consensus 244 ~l~v~~a~~ 252 (264)
.|+..|...
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 999998754
No 163
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.36 E-value=0.00035 Score=60.82 Aligned_cols=78 Identities=24% Similarity=0.437 Sum_probs=67.4
Q ss_pred CCCcEEE-EcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHHHhcCCCCCCcceEEeec
Q 024696 76 VIRRTVY-VSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 152 (264)
Q Consensus 76 ~~~~~v~-V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~--s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~s 152 (264)
....+++ +++++..+++++|++.|..+|.|..+++..+..+ .+|+|||.|.+...+..|+..+...+.++++.+...
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEED 261 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccC
Confidence 3445555 9999999999999999999999999999988764 589999999999999999866667788999999886
Q ss_pred C
Q 024696 153 K 153 (264)
Q Consensus 153 ~ 153 (264)
.
T Consensus 262 ~ 262 (285)
T KOG4210|consen 262 E 262 (285)
T ss_pred C
Confidence 4
No 164
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.29 E-value=0.00074 Score=56.57 Aligned_cols=83 Identities=24% Similarity=0.208 Sum_probs=71.5
Q ss_pred HHHHHHH-hcCCCCCCcceEEeecCCCCCCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEE
Q 024696 130 GARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRL 208 (264)
Q Consensus 130 ~a~~Ai~-l~~~~~~g~~l~V~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i 208 (264)
-|..|.. |++....|+.++|.++. ...|+|.||+..++.+.+.+-|+. ||.|+...+
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~---------------------~a~l~V~nl~~~~sndll~~~f~~-fg~~e~av~ 63 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAM---------------------HAELYVVNLMQGASNDLLEQAFRR-FGPIERAVA 63 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeec---------------------cceEEEEecchhhhhHHHHHhhhh-cCccchhee
Confidence 3455554 89999999999999973 166999999999999999999999 599988777
Q ss_pred eccC-CCceeEEEEEECCHHHHHHHHH
Q 024696 209 LGDY-QHSTRIAFVEFAMAESAIAALN 234 (264)
Q Consensus 209 ~~~~-~~~~g~afV~f~~~~~A~~Ai~ 234 (264)
..|. +++.+-++|+|.....|.+|..
T Consensus 64 ~vD~r~k~t~eg~v~~~~k~~a~~a~r 90 (275)
T KOG0115|consen 64 KVDDRGKPTREGIVEFAKKPNARKAAR 90 (275)
T ss_pred eecccccccccchhhhhcchhHHHHHH
Confidence 6665 8899999999999999999987
No 165
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.28 E-value=0.00075 Score=62.27 Aligned_cols=74 Identities=16% Similarity=0.161 Sum_probs=60.3
Q ss_pred CCceEEEeCCCCC--CCH----HHHHHHhhhcCCceEEEEEeccC-CCceeEEEEEECCHHHHHHHHH-hCCceeC-Cee
Q 024696 174 CSRTIYCTNIDKK--VTQ----GDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLG-SLP 244 (264)
Q Consensus 174 ~~~~l~V~nL~~~--~te----~~L~~~F~~~~G~V~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~-g~~ 244 (264)
-...|+|.|.|-- ... .-|..+|++ +|++....++.+. |..+||.|++|.+..+|+.|++ +||+.+. +++
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk-~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSK-AGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHh-hccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 4578999999863 222 345678999 6999999999876 7899999999999999999998 9999885 556
Q ss_pred EEEe
Q 024696 245 IRVS 248 (264)
Q Consensus 245 l~v~ 248 (264)
..|.
T Consensus 136 f~v~ 139 (698)
T KOG2314|consen 136 FFVR 139 (698)
T ss_pred EEee
Confidence 6664
No 166
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.23 E-value=0.00016 Score=60.49 Aligned_cols=60 Identities=25% Similarity=0.383 Sum_probs=50.3
Q ss_pred HHHHHHhh-cCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 93 EQLATLFL-TCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 93 ~~L~~~F~-~~G~I~~v~i~~~~~-~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
+++...|+ +||+|+++++..+-. .-.|.+||.|..+++|.+|++ ||+-++.|++|....+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 34444555 899999998877654 336999999999999999998 9999999999998886
No 167
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.12 E-value=0.0003 Score=58.81 Aligned_cols=70 Identities=19% Similarity=0.233 Sum_probs=59.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-C---------Cce----eEEEEEECCHHHHHHHHH-hCCc
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-Q---------HST----RIAFVEFAMAESAIAALN-CSGA 238 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-~---------~~~----g~afV~f~~~~~A~~Ai~-l~g~ 238 (264)
....||++++|+.++...|+++|++ ||.|-.|.+.+.. . ... .-|+|+|.+...|..+.. |||.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~-yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~ 151 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQ-YGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNT 151 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHh-ccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 4478999999999999999999998 7999999887643 1 111 158999999999999998 9999
Q ss_pred eeCCee
Q 024696 239 VLGSLP 244 (264)
Q Consensus 239 ~~~g~~ 244 (264)
+|+|+.
T Consensus 152 ~Iggkk 157 (278)
T KOG3152|consen 152 PIGGKK 157 (278)
T ss_pred ccCCCC
Confidence 999974
No 168
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.01 E-value=0.00047 Score=57.70 Aligned_cols=70 Identities=21% Similarity=0.247 Sum_probs=59.0
Q ss_pred CCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCC----------C----ceEEEEEecCHHHHHHHHH-hcCCC
Q 024696 77 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS----------V----LRFAFVEFTDEEGARAALS-LAGTM 141 (264)
Q Consensus 77 ~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~----------s----~G~afV~F~~~~~a~~Ai~-l~~~~ 141 (264)
....||+++||+..+..-|+++|+.||.|-+|.+-+.... + -.-|+|+|.+...|++..+ ||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4467999999999999999999999999999998764321 1 2357899999999999887 99999
Q ss_pred CCCcc
Q 024696 142 LGFYP 146 (264)
Q Consensus 142 ~~g~~ 146 (264)
++|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99864
No 169
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.99 E-value=0.00071 Score=62.79 Aligned_cols=77 Identities=17% Similarity=0.231 Sum_probs=64.5
Q ss_pred cccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCcee---CCeeEE
Q 024696 171 REMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVL---GSLPIR 246 (264)
Q Consensus 171 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~---~g~~l~ 246 (264)
+...++.|+|.||-..+|.-.|+.++....|.|+...| | +-+..|||.|.+.++|..... |||..| +++.|.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--D--kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--D--KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--H--HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 45677999999999999999999999976677877744 2 233479999999999999998 999988 678898
Q ss_pred EeecC
Q 024696 247 VSPSK 251 (264)
Q Consensus 247 v~~a~ 251 (264)
+.|..
T Consensus 516 adf~~ 520 (718)
T KOG2416|consen 516 ADFVR 520 (718)
T ss_pred eeecc
Confidence 88864
No 170
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.98 E-value=0.0007 Score=59.03 Aligned_cols=72 Identities=15% Similarity=0.248 Sum_probs=59.6
Q ss_pred cEEEEcCCCCcCCHHHHHHHhhcCC--CeeEEEEecCC--CCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEe
Q 024696 79 RTVYVSDIDQQVTEEQLATLFLTCG--QVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 150 (264)
Q Consensus 79 ~~v~V~nLp~~~te~~L~~~F~~~G--~I~~v~i~~~~--~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~ 150 (264)
..+|||||-|.+|++||-+.+...| .+.++++..++ +.|||||+|...+..++++.++ |-.+.+.|+.-.|.
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 3499999999999999999998766 55667776655 3689999999999999999999 88888888755443
No 171
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.97 E-value=0.001 Score=59.58 Aligned_cols=65 Identities=22% Similarity=0.299 Sum_probs=55.2
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEecc---C----CC--------ceeEEEEEECCHHHHHHHHH-hC
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD---Y----QH--------STRIAFVEFAMAESAIAALN-CS 236 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~---~----~~--------~~g~afV~f~~~~~A~~Ai~-l~ 236 (264)
-.+++|.+.|||.+-.-+.|.++|.. +|.|+.|+|.+. + +- .+-+|+|+|+..+.|.+|.+ ++
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~-~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGT-VGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhc-ccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 46799999999999888999999999 599999999886 2 11 24589999999999999999 65
Q ss_pred Cc
Q 024696 237 GA 238 (264)
Q Consensus 237 g~ 238 (264)
..
T Consensus 308 ~e 309 (484)
T KOG1855|consen 308 PE 309 (484)
T ss_pred hh
Confidence 44
No 172
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.92 E-value=0.0051 Score=42.86 Aligned_cols=56 Identities=18% Similarity=0.303 Sum_probs=43.2
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hc
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LA 138 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~ 138 (264)
+.....+++ .|..+...||.++|+.||.|. |.++.| ..|||...+.+.|..|+. ++
T Consensus 7 ~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-----TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 7 SRDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-----TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp SGCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-----TEEEEEECCCHHHHHHHHHHT
T ss_pred CcceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-----CcEEEEeecHHHHHHHHHHhc
Confidence 334456666 999999999999999999976 777766 499999999999999987 54
No 173
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.85 E-value=0.0034 Score=48.61 Aligned_cols=55 Identities=33% Similarity=0.448 Sum_probs=46.2
Q ss_pred HHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEeecC
Q 024696 93 EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 153 (264)
Q Consensus 93 ~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~s~ 153 (264)
.+|.+.|..||++.-+++..+ .-+|+|.+.++|-+|++++|..++|+.|+|....
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKt 105 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKT 105 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE--
T ss_pred HHHHHHHHhCCceEEEEEeCC------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCC
Confidence 367888899999887777654 7899999999999999999999999999998853
No 174
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.63 E-value=0.002 Score=56.30 Aligned_cols=74 Identities=12% Similarity=0.150 Sum_probs=60.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhhcCC--ceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCee-EEEe
Q 024696 175 SRTIYCTNIDKKVTQGDIKLFFESVCG--EVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLP-IRVS 248 (264)
Q Consensus 175 ~~~l~V~nL~~~~te~~L~~~F~~~~G--~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~-l~v~ 248 (264)
.-++|||||-+.+|++||.+..... | .+.+++++-+. |+++|||+|-..+..+..+.++ |-...+.|+. ....
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~-G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQST-GLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhh-hHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 3689999999999999998888774 7 56667766654 7899999999999999999999 8888998874 3334
Q ss_pred e
Q 024696 249 P 249 (264)
Q Consensus 249 ~ 249 (264)
+
T Consensus 159 ~ 159 (498)
T KOG4849|consen 159 Y 159 (498)
T ss_pred c
Confidence 4
No 175
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.61 E-value=0.0082 Score=55.11 Aligned_cols=62 Identities=29% Similarity=0.338 Sum_probs=55.5
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhh-cCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFL-TCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS 136 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~-~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~ 136 (264)
-...+|||||+||..++-++|..+|. -||.|..+-|=.|+. -.+|-|-|.|.+..+=.+||+
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 35678999999999999999999999 899999999988854 468999999999999999986
No 176
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.53 E-value=0.032 Score=41.41 Aligned_cols=68 Identities=15% Similarity=0.149 Sum_probs=53.6
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCC
Q 024696 175 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGS 242 (264)
Q Consensus 175 ~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g 242 (264)
...+.+...|..++-++|..+.+.+-..|..++|.+|....+-.+.++|.+.++|..-.. .||..+..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 345555556666777788877776545788999999875677799999999999999998 99998854
No 177
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.46 E-value=0.021 Score=37.74 Aligned_cols=53 Identities=23% Similarity=0.291 Sum_probs=44.5
Q ss_pred CcEEEEcCCCCcCCHHHHHHHhhcC---CCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH
Q 024696 78 RRTVYVSDIDQQVTEEQLATLFLTC---GQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS 136 (264)
Q Consensus 78 ~~~v~V~nLp~~~te~~L~~~F~~~---G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~ 136 (264)
..+|+|.|+.. ++.++|+.+|..| .....|.++.|. .|=|.|.+.+.|.+|+.
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-----ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-----SCNVVFKDEETAARALV 60 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-----cEEEEECCHHHHHHHHH
Confidence 35799999954 8999999999988 234679999884 78899999999999985
No 178
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.39 E-value=0.0098 Score=50.93 Aligned_cols=61 Identities=26% Similarity=0.204 Sum_probs=51.4
Q ss_pred HHHHHHHhhcCCCeeEEEEecCCCCC---ceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 92 EEQLATLFLTCGQVVDCRICGDPNSV---LRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 92 e~~L~~~F~~~G~I~~v~i~~~~~~s---~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
++++.+-..+||.|..|.|..+++.. .--.||+|+..++|.+|+- |||.+|+|+.++..+-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 35667778899999999988876532 3578999999999999997 9999999999988774
No 179
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.31 E-value=0.0061 Score=56.48 Aligned_cols=76 Identities=21% Similarity=0.211 Sum_probs=58.6
Q ss_pred CCCcEEEEcCCCCcC--CH----HHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCCCCC-Ccc
Q 024696 76 VIRRTVYVSDIDQQV--TE----EQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALS-LAGTMLG-FYP 146 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~--te----~~L~~~F~~~G~I~~v~i~~~~~-~s~G~afV~F~~~~~a~~Ai~-l~~~~~~-g~~ 146 (264)
.....|.|-|+|--- .. .-|..+|+.+|++....++.+.. +.+||.|++|++..+|+.|++ +||+.+. ..+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 345569999998421 12 23567899999999999887764 578999999999999999998 9999876 445
Q ss_pred eEEee
Q 024696 147 VRVLP 151 (264)
Q Consensus 147 l~V~~ 151 (264)
..|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 55544
No 180
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.07 E-value=0.0029 Score=53.17 Aligned_cols=62 Identities=26% Similarity=0.329 Sum_probs=49.6
Q ss_pred HHHHHHhhhcCCceEEEEEeccC-CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 024696 190 GDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 251 (264)
Q Consensus 190 ~~L~~~F~~~~G~V~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~ 251 (264)
+++...|+.-||+|+.+.+-.+- .+-.|-++|.|...++|++|++ |||..+.|++|...++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 44444455228999999776544 3567889999999999999999 99999999999998863
No 181
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.90 E-value=0.0059 Score=54.72 Aligned_cols=73 Identities=23% Similarity=0.287 Sum_probs=58.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCce--EEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCc-eeCCeeEEEeecC
Q 024696 176 RTIYCTNIDKKVTQGDIKLFFESVCGEV--QRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGA-VLGSLPIRVSPSK 251 (264)
Q Consensus 176 ~~l~V~nL~~~~te~~L~~~F~~~~G~V--~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~-~~~g~~l~v~~a~ 251 (264)
+.+|++||.+..+.+||..+|... .+ ..-.++ ..||+||.+.+..-|.+|++ ++|. ++.|+.+.+.++-
T Consensus 2 nklyignL~p~~~psdl~svfg~a--k~~~~g~fl~-----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDA--KIPGSGQFLV-----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccc--cCCCCcceee-----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 468999999999999999999863 21 111111 34799999999999999998 8875 7899999999987
Q ss_pred CCCC
Q 024696 252 TPVR 255 (264)
Q Consensus 252 ~~~~ 255 (264)
|...
T Consensus 75 ~kkq 78 (584)
T KOG2193|consen 75 PKKQ 78 (584)
T ss_pred hHHH
Confidence 7643
No 182
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.85 E-value=0.0022 Score=62.27 Aligned_cols=79 Identities=23% Similarity=0.386 Sum_probs=68.7
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
..+.+||+|||+..+++.+|+..|.. +|.|..|.|-..+ +....||||.|-+..++-.|.. +.+..|....+++.+.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e-~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDE-SGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhh-hccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 35679999999999999999999999 6999999998765 5566699999999999999997 9998888777777777
Q ss_pred CC
Q 024696 251 KT 252 (264)
Q Consensus 251 ~~ 252 (264)
.+
T Consensus 449 ~~ 450 (975)
T KOG0112|consen 449 QP 450 (975)
T ss_pred cc
Confidence 54
No 183
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=95.84 E-value=0.58 Score=40.43 Aligned_cols=161 Identities=14% Similarity=0.157 Sum_probs=103.8
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC---------CCceEEEEEecCHHHHHHHHH--hcC---
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN---------SVLRFAFVEFTDEEGARAALS--LAG--- 139 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~---------~s~G~afV~F~~~~~a~~Ai~--l~~--- 139 (264)
+.-.+|.|...|+..+++-..+..-|..||+|++|.++.+.. +....+.+.|-+.+.+-.... ++.
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 455678899999999999999999999999999999998761 235789999998888876543 321
Q ss_pred --CCCCCcceEEeecCCCCCCCCC------CCC----CC--CccccccCCceEEEeCCCCCCCHHHHH-H---HhhhcCC
Q 024696 140 --TMLGFYPVRVLPSKTAIAPVNP------TFL----PR--SEDEREMCSRTIYCTNIDKKVTQGDIK-L---FFESVCG 201 (264)
Q Consensus 140 --~~~~g~~l~V~~s~~~~~~~~~------~~~----~~--~~~~~~~~~~~l~V~nL~~~~te~~L~-~---~F~~~~G 201 (264)
+.+....|.+.+..-....... .+. +. -.-......+.|.|.-= ..++.+++. + ++.. -+
T Consensus 91 fK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~-~~ 168 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKN-SN 168 (309)
T ss_pred HHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhcc-CC
Confidence 3356677777664321111110 000 00 00011334567777533 444344432 2 2222 14
Q ss_pred ----ceEEEEEeccCC----CceeEEEEEECCHHHHHHHHH-hC
Q 024696 202 ----EVQRLRLLGDYQ----HSTRIAFVEFAMAESAIAALN-CS 236 (264)
Q Consensus 202 ----~V~~v~i~~~~~----~~~g~afV~f~~~~~A~~Ai~-l~ 236 (264)
.+++|.++.... =++.||.++|-+...|...++ +.
T Consensus 169 n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 169 NKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred CceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 368888887542 278899999999999999998 53
No 184
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.77 E-value=0.13 Score=38.15 Aligned_cols=68 Identities=13% Similarity=0.106 Sum_probs=52.0
Q ss_pred CCcEEEEcCCCCcCCHHHHHHHhhcC-CCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCC
Q 024696 77 IRRTVYVSDIDQQVTEEQLATLFLTC-GQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGF 144 (264)
Q Consensus 77 ~~~~v~V~nLp~~~te~~L~~~F~~~-G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g 144 (264)
....+.+...|+.++-++|..+.+.+ ..|..+++++|...++=-+.+.|.+.++|+...+ +||+.|..
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34456666666666667776666654 4678899999877677789999999999999997 99998753
No 185
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.68 E-value=0.026 Score=50.25 Aligned_cols=74 Identities=23% Similarity=0.369 Sum_probs=62.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCC-----CceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEeec
Q 024696 176 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ-----HSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPS 250 (264)
Q Consensus 176 ~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~-----~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~a 250 (264)
..|.|.||.++++.+++..+|.- .|+|..+.++...+ .....|||.|.|..++..|..|.++.+-++-|.|-..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~-lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGN-LGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhh-ccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 48999999999999999999996 69999999887432 3556999999999999999988787777776666543
No 186
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.68 E-value=0.085 Score=34.82 Aligned_cols=53 Identities=25% Similarity=0.338 Sum_probs=44.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCC--ceEEEEEeccCCCceeEEEEEECCHHHHHHHHH
Q 024696 176 RTIYCTNIDKKVTQGDIKLFFESVCG--EVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN 234 (264)
Q Consensus 176 ~~l~V~nL~~~~te~~L~~~F~~~~G--~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~ 234 (264)
..|+|.|+.. ++.++++.+|..+|. ...+|..+.|. .|-|.|.+.+.|.+|+.
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-----ScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-----SCNVVFKDEETAARALV 60 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-----cEEEEECCHHHHHHHHH
Confidence 6799999865 888999999998422 56788888775 69999999999999986
No 187
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.59 E-value=0.014 Score=54.54 Aligned_cols=73 Identities=16% Similarity=0.103 Sum_probs=60.4
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhh-cCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCC---CCcceEEe
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFL-TCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTML---GFYPVRVL 150 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~-~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~---~g~~l~V~ 150 (264)
..+..|+|.||-...|.-+|++++. ..|.|.+. |+..-+ ..|||.|.+.++|....+ |+|..+ +++.|.+.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-WmDkIK---ShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WMDKIK---SHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHH-HHHHhh---cceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 3456799999999999999999999 67777776 553333 599999999999999998 999876 56788887
Q ss_pred ec
Q 024696 151 PS 152 (264)
Q Consensus 151 ~s 152 (264)
|.
T Consensus 518 f~ 519 (718)
T KOG2416|consen 518 FV 519 (718)
T ss_pred ec
Confidence 75
No 188
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=95.30 E-value=0.017 Score=40.94 Aligned_cols=73 Identities=21% Similarity=0.213 Sum_probs=47.8
Q ss_pred EEEEecCHHHHHHHHHhcC--CCCCCcceEEeecCCCCCCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhh
Q 024696 121 AFVEFTDEEGARAALSLAG--TMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFES 198 (264)
Q Consensus 121 afV~F~~~~~a~~Ai~l~~--~~~~g~~l~V~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~ 198 (264)
|.|+|.++.-|++.+++.. ..+++..+.|..+..... ....-+-......++|.|.|+|...++++|++.++=
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~-----~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~LeI 75 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLG-----HLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLEI 75 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecC-----CceEEEEEEcccCCEEEEeCCCCCCChhhheeeEEE
Confidence 6899999999999987443 335666666655411100 001111112345689999999999999999987763
No 189
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.22 E-value=0.061 Score=49.99 Aligned_cols=70 Identities=20% Similarity=0.364 Sum_probs=57.5
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhh--cCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcC--CCCCCcceEE
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFL--TCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAG--TMLGFYPVRV 149 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~--~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~--~~~~g~~l~V 149 (264)
....+.|.++-||..+-.++++.+|+ .|..+.+|.+-.+. -=||+|++..+|+.|.+ |.. +.|.|++|..
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-----nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-----NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-----ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 34567799999999999999999998 58889999887775 45999999999999987 543 4578887744
No 190
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.17 E-value=0.14 Score=46.47 Aligned_cols=73 Identities=15% Similarity=0.224 Sum_probs=62.0
Q ss_pred cccCCCCcEEEEcCCCCcCCHHHHHHHhhcC-CCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCC
Q 024696 72 QQDEVIRRTVYVSDIDQQVTEEQLATLFLTC-GQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGF 144 (264)
Q Consensus 72 ~~~~~~~~~v~V~nLp~~~te~~L~~~F~~~-G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g 144 (264)
...+.....|+|-.+|-.+|-.||..+...+ ..|.++++++|...++=.+.|.|.+.++|....+ +||+.|..
T Consensus 68 ~~~~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 68 LKNASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred cccCCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 3344458889999999999999999999854 5789999999876666789999999999999998 99998853
No 191
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.99 E-value=0.072 Score=45.94 Aligned_cols=68 Identities=24% Similarity=0.310 Sum_probs=53.7
Q ss_pred cEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCcc-eEEee
Q 024696 79 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYP-VRVLP 151 (264)
Q Consensus 79 ~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~-l~V~~ 151 (264)
.=|.|-++|+. .-.-|.+.|+.||+|.+.....+. -+-+|.|.+..+|++|+..||+.|.|.. |-|.+
T Consensus 198 ~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~~ng----NwMhirYssr~~A~KALskng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 198 TWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTPSNG----NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKP 266 (350)
T ss_pred ceEEEeccCcc-chhHHHHHHHhhCeeeeeecCCCC----ceEEEEecchhHHHHhhhhcCeeeccceEEeeee
Confidence 34888888875 556788999999999876555222 3999999999999999999999998763 34555
No 192
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.87 E-value=0.09 Score=47.73 Aligned_cols=68 Identities=16% Similarity=0.229 Sum_probs=60.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCC
Q 024696 175 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGS 242 (264)
Q Consensus 175 ~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g 242 (264)
++.|+|-.+|..++-.||..++..+.-.|.+++|++|.-..+-.++|+|.+.++|....+ +||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 689999999999999999999998766899999999764566789999999999999998 99987754
No 193
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.84 E-value=0.11 Score=42.25 Aligned_cols=62 Identities=18% Similarity=0.207 Sum_probs=46.4
Q ss_pred CHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hC--CceeCCeeEEEeecCCCC
Q 024696 188 TQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CS--GAVLGSLPIRVSPSKTPV 254 (264)
Q Consensus 188 te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~--g~~~~g~~l~v~~a~~~~ 254 (264)
..+.|+++|.. |+.+......+.-+ -..|.|.+.++|..|.. ++ +..+.|..+++-|+.+..
T Consensus 8 ~~~~l~~l~~~-~~~~~~~~~L~sFr----Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFST-YDPPVQFSPLKSFR----RIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHT-T-SS-EEEEETTTT----EEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHh-cCCceEEEEcCCCC----EEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 45789999998 69888888877654 68999999999999999 99 999999999999986553
No 194
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.76 E-value=0.028 Score=45.43 Aligned_cols=77 Identities=13% Similarity=0.053 Sum_probs=48.3
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhc-CCCe---eEEEEecCCC----CCceEEEEEecCHHHHHHHHH-hcCCCCCCc-
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLT-CGQV---VDCRICGDPN----SVLRFAFVEFTDEEGARAALS-LAGTMLGFY- 145 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~-~G~I---~~v~i~~~~~----~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~- 145 (264)
....+|.|++||+.+||+++.+.++. ++.- ..+.-..... ....-|||.|.+.+++....+ ++|+.|.+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 44568999999999999999997776 6665 3333222221 124689999999999999988 999776322
Q ss_pred ----ceEEeec
Q 024696 146 ----PVRVLPS 152 (264)
Q Consensus 146 ----~l~V~~s 152 (264)
+-.|.+|
T Consensus 85 g~~~~~~VE~A 95 (176)
T PF03467_consen 85 GNEYPAVVEFA 95 (176)
T ss_dssp S-EEEEEEEE-
T ss_pred CCCcceeEEEc
Confidence 4455555
No 195
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.50 E-value=0.015 Score=50.82 Aligned_cols=77 Identities=14% Similarity=0.265 Sum_probs=62.4
Q ss_pred ceEEEeCCCCCCCHHHHH---HHhhhcCCceEEEEEeccC----C-CceeEEEEEECCHHHHHHHHH-hCCceeCCeeEE
Q 024696 176 RTIYCTNIDKKVTQGDIK---LFFESVCGEVQRLRLLGDY----Q-HSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIR 246 (264)
Q Consensus 176 ~~l~V~nL~~~~te~~L~---~~F~~~~G~V~~v~i~~~~----~-~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~ 246 (264)
+.+||-+|+....++++. +.|.+ ||.|..|.+.+++ + ...-.++|+|...++|..|+. .+|....|+.++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgq-ygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQ-YGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccc-cccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 678899999886666553 48888 7999999988865 1 122259999999999999998 999999999998
Q ss_pred EeecCCC
Q 024696 247 VSPSKTP 253 (264)
Q Consensus 247 v~~a~~~ 253 (264)
..+..++
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 8887665
No 196
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=94.29 E-value=0.056 Score=45.55 Aligned_cols=73 Identities=26% Similarity=0.279 Sum_probs=58.1
Q ss_pred cEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEecCHHHHHHHHH-hcCCC----CCCcceEEee
Q 024696 79 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTM----LGFYPVRVLP 151 (264)
Q Consensus 79 ~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~~s~G~afV~F~~~~~a~~Ai~-l~~~~----~~g~~l~V~~ 151 (264)
..|+|.||+.-++.+.+.+.|+.||+|+...++-|. ....+-++|+|...-.|.+|.. +...- ..+++.-|.+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 579999999999999999999999999876665554 5677999999999999999987 43222 2456666655
No 197
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.09 E-value=0.035 Score=50.58 Aligned_cols=72 Identities=21% Similarity=0.163 Sum_probs=58.3
Q ss_pred EEEeCCCCC-CCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecCCCC
Q 024696 178 IYCTNIDKK-VTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKTPV 254 (264)
Q Consensus 178 l~V~nL~~~-~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~a~~~~ 254 (264)
+-+.-.|+. -+-.+|...|.+ ||.|..|.+-... -.|.|+|.+..+|-+|...++..|+|+.|+|.|-+|..
T Consensus 375 l~lek~~~glnt~a~ln~hfA~-fG~i~n~qv~~~~----~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHFAQ-FGEIENIQVDYSS----LHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hhhhccCCCCchHhhhhhhhhh-cCccccccccCch----hhheeeeeccccccchhccccceecCceeEEEEecCCc
Confidence 334444444 345889999999 6999999886542 26999999999999999899999999999999988853
No 198
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.80 E-value=0.34 Score=41.90 Aligned_cols=69 Identities=17% Similarity=0.232 Sum_probs=53.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHHhCCceeCCe-eEEEee
Q 024696 175 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSL-PIRVSP 249 (264)
Q Consensus 175 ~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~-~l~v~~ 249 (264)
..-|-|-++|+.- ..-|...|++ ||+|.+..-... | ++-.|.|.+..+|++|++.||..|+|. -|-|+.
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~-cG~Vvkhv~~~n-g---NwMhirYssr~~A~KALskng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSR-CGEVVKHVTPSN-G---NWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKP 266 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHh-hCeeeeeecCCC-C---ceEEEEecchhHHHHhhhhcCeeeccceEEeeee
Confidence 4567777887753 4567889998 799988766522 2 499999999999999999999999875 444554
No 199
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.75 E-value=0.11 Score=41.93 Aligned_cols=80 Identities=10% Similarity=0.062 Sum_probs=50.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhhcCCce---EEEEEeccC---C-CceeEEEEEECCHHHHHHHHH-hCCceeCC----
Q 024696 175 SRTIYCTNIDKKVTQGDIKLFFESVCGEV---QRLRLLGDY---Q-HSTRIAFVEFAMAESAIAALN-CSGAVLGS---- 242 (264)
Q Consensus 175 ~~~l~V~nL~~~~te~~L~~~F~~~~G~V---~~v~i~~~~---~-~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g---- 242 (264)
..+|.|++||+.+|++++.+.++..++.- .++.-..+. . ..-.-|+|.|.+.+++..-.+ ++|+.|-+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 47899999999999999999777634544 344322221 1 123479999999999888888 99987732
Q ss_pred -eeEEEeecCCCC
Q 024696 243 -LPIRVSPSKTPV 254 (264)
Q Consensus 243 -~~l~v~~a~~~~ 254 (264)
..-.|++|-...
T Consensus 87 ~~~~~VE~Apyqk 99 (176)
T PF03467_consen 87 EYPAVVEFAPYQK 99 (176)
T ss_dssp EEEEEEEE-SS--
T ss_pred CcceeEEEcchhc
Confidence 356677775543
No 200
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=93.67 E-value=0.5 Score=33.08 Aligned_cols=53 Identities=23% Similarity=0.325 Sum_probs=38.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hC
Q 024696 176 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CS 236 (264)
Q Consensus 176 ~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~ 236 (264)
...+|+ .|......||.++|+. ||.|. |..+.|. .|||...+.+.|..|+. ++
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFsp-fG~I~-VsWi~dT-----SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSP-FGQIY-VSWINDT-----SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCC-CCCEE-EEEECTT-----EEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhcc-CCcEE-EEEEcCC-----cEEEEeecHHHHHHHHHHhc
Confidence 455555 9999999999999999 69965 4444443 89999999999999887 53
No 201
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.66 E-value=0.39 Score=37.09 Aligned_cols=73 Identities=21% Similarity=0.144 Sum_probs=52.5
Q ss_pred ccCCceEEEeCCCCCC----CHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEE
Q 024696 172 EMCSRTIYCTNIDKKV----TQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIR 246 (264)
Q Consensus 172 ~~~~~~l~V~nL~~~~----te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~ 246 (264)
.++-.||.|.=|..++ +...+..-++. ||.|.+|..... -.|.|.|.|..+|-+|+. +.. ...|..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~-fGpI~SVT~cGr-----qsavVvF~d~~SAC~Av~Af~s-~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSV-FGPIQSVTLCGR-----QSAVVVFKDITSACKAVSAFQS-RAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHh-cCCcceeeecCC-----ceEEEEehhhHHHHHHHHhhcC-CCCCceEE
Confidence 3455788887665543 23344455666 699999988644 279999999999999998 444 66777788
Q ss_pred EeecC
Q 024696 247 VSPSK 251 (264)
Q Consensus 247 v~~a~ 251 (264)
++|-.
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 87743
No 202
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=93.45 E-value=0.039 Score=48.27 Aligned_cols=79 Identities=18% Similarity=0.271 Sum_probs=61.7
Q ss_pred CCCcEEEEcCCCCcCCHHHHH---HHhhcCCCeeEEEEecCCC-----CCceEEEEEecCHHHHHHHHH-hcCCCCCCcc
Q 024696 76 VIRRTVYVSDIDQQVTEEQLA---TLFLTCGQVVDCRICGDPN-----SVLRFAFVEFTDEEGARAALS-LAGTMLGFYP 146 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~---~~F~~~G~I~~v~i~~~~~-----~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~ 146 (264)
....-+||-+|+...-.+++. +.|.+||.|..|.+.++.. ....-++|+|...++|..||. .+|....|+.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 344568999999876655553 4889999999998888662 123469999999999999998 9999999998
Q ss_pred eEEeecCC
Q 024696 147 VRVLPSKT 154 (264)
Q Consensus 147 l~V~~s~~ 154 (264)
++..+..+
T Consensus 155 lka~~gtt 162 (327)
T KOG2068|consen 155 LKASLGTT 162 (327)
T ss_pred hHHhhCCC
Confidence 77766543
No 203
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.37 E-value=0.065 Score=52.18 Aligned_cols=71 Identities=31% Similarity=0.346 Sum_probs=60.4
Q ss_pred EeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCcee--CCeeEEEeecCCCCC
Q 024696 180 CTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVL--GSLPIRVSPSKTPVR 255 (264)
Q Consensus 180 V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~--~g~~l~v~~a~~~~~ 255 (264)
+.|.+-..+-..|..+|++ ||.|.+.+..++.+ .|.|+|.+.+.|..|++ ++|.++ -|-+.+|.+|++.+-
T Consensus 303 ~~nn~v~~tSssL~~l~s~-yg~v~s~wtlr~~N----~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~ 376 (1007)
T KOG4574|consen 303 LENNAVNLTSSSLATLCSD-YGSVASAWTLRDLN----MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPM 376 (1007)
T ss_pred hhcccccchHHHHHHHHHh-hcchhhheeccccc----chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccc
Confidence 4444456777889999999 79999999988764 89999999999999999 999876 588999999998754
No 204
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.60 E-value=0.49 Score=36.58 Aligned_cols=72 Identities=18% Similarity=0.157 Sum_probs=54.1
Q ss_pred CCCCcEEEEcCCCCcCC----HHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEE
Q 024696 75 EVIRRTVYVSDIDQQVT----EEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 149 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~t----e~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V 149 (264)
+....+|.|+=|..++. ...+...++.||+|.+|..... ..|.|.|+|..+|=.|+. +.. ...|..++.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-----qsavVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-----QSAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-----ceEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 34456788876665543 3445667779999999988765 489999999999999997 554 567777877
Q ss_pred eec
Q 024696 150 LPS 152 (264)
Q Consensus 150 ~~s 152 (264)
.|-
T Consensus 157 sWq 159 (166)
T PF15023_consen 157 SWQ 159 (166)
T ss_pred ecc
Confidence 774
No 205
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.33 E-value=0.37 Score=39.20 Aligned_cols=60 Identities=27% Similarity=0.190 Sum_probs=44.8
Q ss_pred CHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hc--CCCCCCcceEEeecCC
Q 024696 91 TEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LA--GTMLGFYPVRVLPSKT 154 (264)
Q Consensus 91 te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~--~~~~~g~~l~V~~s~~ 154 (264)
..+.|+++|..++.+......+.= +-..|.|.+.++|.+|.. ++ +..+.|..+++.++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF----rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF----RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT----TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC----CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 568899999999998877776554 589999999999999998 88 8889999999998744
No 206
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=91.94 E-value=0.89 Score=31.03 Aligned_cols=58 Identities=22% Similarity=0.336 Sum_probs=34.1
Q ss_pred CCCHHHHHHHhhhcCC----ceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 186 KVTQGDIKLFFESVCG----EVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 186 ~~te~~L~~~F~~~~G----~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
.++..+|..++....| .|-.|+|..+ |+||+-... .|..+++ +++..+.|++++|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS-------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4788888888887422 4566777554 899988765 6777887 9999999999999864
No 207
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=91.80 E-value=0.12 Score=47.22 Aligned_cols=75 Identities=15% Similarity=0.154 Sum_probs=61.7
Q ss_pred CCcEEEEcCCCCcC-CHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEeecCCC
Q 024696 77 IRRTVYVSDIDQQV-TEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTA 155 (264)
Q Consensus 77 ~~~~v~V~nLp~~~-te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~s~~~ 155 (264)
+.+.+-+.-.|+.. +-++|...|.+||+|..|.+-... -.|.|+|.+..+|-.|....+..|.++.|+|-|.+..
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~----~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnps 446 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS----LHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNPS 446 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch----hhheeeeeccccccchhccccceecCceeEEEEecCC
Confidence 44556666666664 568899999999999998886653 4899999999999888888999999999999997653
No 208
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.62 E-value=0.92 Score=30.36 Aligned_cols=54 Identities=24% Similarity=0.343 Sum_probs=41.8
Q ss_pred cCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEE
Q 024696 89 QVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 149 (264)
Q Consensus 89 ~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V 149 (264)
.++-++++..+..|+-. ++..|+. || ||.|.+..+|+++.. .++..+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~t---Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDRT---GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecCC---EE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46889999999999762 3344543 44 899999999999998 8888877766654
No 209
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=89.59 E-value=1.5 Score=41.10 Aligned_cols=67 Identities=15% Similarity=0.200 Sum_probs=51.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhh-cCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hC--CceeCCeeEEE
Q 024696 176 RTIYCTNIDKKVTQGDIKLFFES-VCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CS--GAVLGSLPIRV 247 (264)
Q Consensus 176 ~~l~V~nL~~~~te~~L~~~F~~-~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~--g~~~~g~~l~v 247 (264)
+.|.++-+|..+-+|+++.+|+. .+-++.+|.+-.+.+ =||+|++..||++|.. |. -..|.|++|..
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-----WyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-----WYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-----eEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 67889999999999999999984 134788888765543 5999999999999997 53 24566665543
No 210
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=88.87 E-value=2 Score=28.76 Aligned_cols=54 Identities=20% Similarity=0.252 Sum_probs=41.5
Q ss_pred CCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEE
Q 024696 186 KVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRV 247 (264)
Q Consensus 186 ~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v 247 (264)
.++-++++.-+..+ +- .+|.. |+ .|| +|.|.+..+|+++.. .+|..+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y-~~-~~I~~--d~---tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKY-RW-DRIRD--DR---TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcC-Cc-ceEEe--cC---CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 47889999999984 42 33333 32 234 899999999999998 8999998888765
No 211
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=88.56 E-value=1.2 Score=34.54 Aligned_cols=121 Identities=11% Similarity=-0.031 Sum_probs=74.6
Q ss_pred cCCHHHHHHHhhc-CCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEeecCCCCCCCCCCCCCCC
Q 024696 89 QVTEEQLATLFLT-CGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKTAIAPVNPTFLPRS 167 (264)
Q Consensus 89 ~~te~~L~~~F~~-~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~s~~~~~~~~~~~~~~~ 167 (264)
..+-..|.+.+.. .+....+.+..-.. ++..++|.+++++.++++.....++|..+.++.-+..... ..
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l~~---~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~~-------~~ 97 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDLGD---NLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFNP-------SE 97 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEeCC---CeEEEEEEeccceeEEEecccccccccchhhhhhcccccc-------cc
Confidence 3556666666653 23222333332222 6999999999999999886666777877777654311111 10
Q ss_pred ccccccCCceEEEeCCCCC-CCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEE
Q 024696 168 EDEREMCSRTIYCTNIDKK-VTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFV 221 (264)
Q Consensus 168 ~~~~~~~~~~l~V~nL~~~-~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV 221 (264)
.. -....--|-|.|||.. .+++-++.+-+. .|.+.++...........|+-|
T Consensus 98 ~~-~~~~~vWVri~glP~~~~~~~~~~~i~~~-iG~~i~vD~~t~~~~~~~~~Rv 150 (153)
T PF14111_consen 98 VK-FEHIPVWVRIYGLPLHLWSEEILKAIGSK-IGEPIEVDENTLKRTRLDFARV 150 (153)
T ss_pred cc-eeccchhhhhccCCHHHhhhHHHHHHHHh-cCCeEEEEcCCCCcccccEEEE
Confidence 00 0112245778899987 788889999998 5999999876543323335544
No 212
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=88.41 E-value=0.44 Score=46.67 Aligned_cols=71 Identities=32% Similarity=0.315 Sum_probs=60.0
Q ss_pred EEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCC--CCcceEEeecCCC
Q 024696 81 VYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTML--GFYPVRVLPSKTA 155 (264)
Q Consensus 81 v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~--~g~~l~V~~s~~~ 155 (264)
.++.|.+-..+...|..++.+||.|.+.+..++-+ .|.|+|.+.+.|..|++ ++|+.. .|-+.+|.+++..
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N----~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN----MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc----chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 44455555667788899999999999999988886 99999999999999998 999885 5888999988764
No 213
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.10 E-value=1.5 Score=39.59 Aligned_cols=68 Identities=19% Similarity=0.240 Sum_probs=54.5
Q ss_pred ccccccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCe-eEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCCC
Q 024696 69 SNAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQV-VDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTM 141 (264)
Q Consensus 69 ~~~~~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I-~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~l~~~~ 141 (264)
....++..-...|-|.++|.....+||...|+.|+.- -+|.|+.| -.||-.|.+...|..|+.+...+
T Consensus 382 ~~ll~e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-----thalaVFss~~~AaeaLt~kh~~ 450 (528)
T KOG4483|consen 382 PPLLRESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-----THALAVFSSVNRAAEALTLKHDW 450 (528)
T ss_pred CCCCCcccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-----ceeEEeecchHHHHHHhhccCce
Confidence 3344455678889999999999999999999998753 56777766 39999999999999999864333
No 214
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=87.97 E-value=0.61 Score=44.50 Aligned_cols=70 Identities=17% Similarity=0.100 Sum_probs=59.9
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q 024696 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 249 (264)
Q Consensus 172 ~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~ 249 (264)
.+...++||+|+...+..+-++.+... +|.|..+.... |||..|..+.-+..|+. ++-..++|..+.+.-
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~-~g~v~s~kr~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAK-SGFVPSWKRDK-------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhh-CCcchhhhhhh-------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 345589999999999999999999997 79998886644 89999999999999998 888888888776654
No 215
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=87.94 E-value=2.8 Score=28.53 Aligned_cols=57 Identities=25% Similarity=0.285 Sum_probs=33.3
Q ss_pred cCCHHHHHHHhhcCCC-----eeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 89 QVTEEQLATLFLTCGQ-----VVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 89 ~~te~~L~~~F~~~G~-----I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
.++..+|..++...+. |-.|.+..+ |+||+-.. +.|..+++ +++..+.|+++.|+.+
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~~------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFDN------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-SS-------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEeee------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4788899999987654 445666543 99999864 46777787 9999999999999763
No 216
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=87.12 E-value=0.072 Score=50.50 Aligned_cols=145 Identities=17% Similarity=0.154 Sum_probs=92.6
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecCC
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 154 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~ 154 (264)
...-++||+|+...++++-++.....+|.|-..... -|+|.+|.....+.+|+. ++...++|..+.+.....
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~-------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~q 110 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD-------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDEQ 110 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh-------hhcccchhhHHHHHHHHHHhcccCCCcchhhccchhh
Confidence 345679999999999999999999999988765433 299999999999999998 888888888887766321
Q ss_pred C-CCCC---------CCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCceeEEEEEE
Q 024696 155 A-IAPV---------NPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEF 223 (264)
Q Consensus 155 ~-~~~~---------~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-~~~~g~afV~f 223 (264)
. .... ...+.|.+. .+-.+|+|+|-...+......+.-. +......-..+. ++...++|-+|
T Consensus 111 ~~~n~~k~~~~~~~~~~~f~p~~s------rr~e~i~~k~~~l~~~~~~~~~~is-~s~~s~~~~~e~d~h~~e~~~~~~ 183 (668)
T KOG2253|consen 111 TIENADKEKSIANKESHKFVPSSS------RRQESIQNKPLSLDEQIHKKSLQIS-SSAASRRQIAEADDHCLELEKTET 183 (668)
T ss_pred hhcCccccccchhhhhcccCCchh------HHHHHhhccccchhHHHHHHHHhcc-chhhhhhhhHHHHHHHHHHHHhhc
Confidence 1 1110 111111111 3567788888777776666666542 433333332222 33444556666
Q ss_pred CCHHHHHHHHH
Q 024696 224 AMAESAIAALN 234 (264)
Q Consensus 224 ~~~~~A~~Ai~ 234 (264)
.+....-.+..
T Consensus 184 ~s~~~~~~~~~ 194 (668)
T KOG2253|consen 184 ESNSALSKEAE 194 (668)
T ss_pred ccccccCcccc
Confidence 55555444443
No 217
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=85.88 E-value=0.9 Score=36.44 Aligned_cols=129 Identities=18% Similarity=0.197 Sum_probs=74.8
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhhcccccccCCCCCCcccccc----ccccccccCCCCcEEEEcCCC
Q 024696 12 LEGYVCPLLLILSCFKLLVWLLVWYFLSLIKVLCLFNTAFQKRNGYSQGKRRMNC----RTSNAQQDEVIRRTVYVSDID 87 (264)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~v~V~nLp 87 (264)
-+|.| ||....-+.+|-..... |..++.+|..-....+.-.....+-++... ...+........+++|..
T Consensus 44 ~~gwv-pi~i~i~FnRla~lttD--~~~Iv~al~ksk~~l~eisedk~k~rr~~skplpEvt~e~~~~~~~r~v~~K--- 117 (205)
T KOG4213|consen 44 DDGWV-PIEIMIKFNRLASLTTD--FNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKEGIKERTVYKK--- 117 (205)
T ss_pred ccCCc-cchhhhhhhhhhhcccc--HHHHHHHHhhCHHhhhhhhhchhhhhcCcCCCCccccHHHHHHHHHhhhhcc---
Confidence 36777 88877677776663333 334777777766655433233222111111 112333344556777777
Q ss_pred CcCCHHHHHHHhhcC-CCeeEEEEecCCC---CCceEEEEEecCHHHHHHHHHhcCCCCCCcceE
Q 024696 88 QQVTEEQLATLFLTC-GQVVDCRICGDPN---SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVR 148 (264)
Q Consensus 88 ~~~te~~L~~~F~~~-G~I~~v~i~~~~~---~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~ 148 (264)
.|+++|.++..-- |.+..+.+.+..+ .-+|-.||+|.+.+.|...++-......-.+|.
T Consensus 118 --~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e~~~~e~el~ 180 (205)
T KOG4213|consen 118 --ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHEEKGAETELK 180 (205)
T ss_pred --CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhhhhccchHHH
Confidence 4555555544411 7888877766443 347999999999999999876443344434443
No 218
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.34 E-value=15 Score=34.97 Aligned_cols=78 Identities=19% Similarity=0.272 Sum_probs=61.1
Q ss_pred ccCCceEEEeCCCCC-CCHHHHHHHhhhc--C-CceEEEEEeccC-CC----------c---------------------
Q 024696 172 EMCSRTIYCTNIDKK-VTQGDIKLFFESV--C-GEVQRLRLLGDY-QH----------S--------------------- 215 (264)
Q Consensus 172 ~~~~~~l~V~nL~~~-~te~~L~~~F~~~--~-G~V~~v~i~~~~-~~----------~--------------------- 215 (264)
...++.|-|-||.+. +...+|.-+|+.| + |.|.+|.|.+.. |+ +
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 345688999999986 9999999999875 3 489999887643 21 2
Q ss_pred --------e---------eEEEEEECCHHHHHHHHH-hCCceeC--CeeEEEee
Q 024696 216 --------T---------RIAFVEFAMAESAIAALN-CSGAVLG--SLPIRVSP 249 (264)
Q Consensus 216 --------~---------g~afV~f~~~~~A~~Ai~-l~g~~~~--g~~l~v~~ 249 (264)
| -||.|+|.+...|..... .+|.++. +..+-++|
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 1 289999999999999998 9999986 45555555
No 219
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=74.49 E-value=9.8 Score=32.94 Aligned_cols=48 Identities=10% Similarity=0.254 Sum_probs=37.2
Q ss_pred cEEEEcCCCCcCCHHHHHHHhhcCCCe-eEEEEecCCCCCceEEEEEecCHHH
Q 024696 79 RTVYVSDIDQQVTEEQLATLFLTCGQV-VDCRICGDPNSVLRFAFVEFTDEEG 130 (264)
Q Consensus 79 ~~v~V~nLp~~~te~~L~~~F~~~G~I-~~v~i~~~~~~s~G~afV~F~~~~~ 130 (264)
.-|+++|||.++.-.||+..+.+.|.+ .++.|.. +.|-||+.|.+...
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg----~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG----HFGKCFLHFGNRKG 379 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeeec----CCcceeEecCCccC
Confidence 349999999999999999999987754 4555543 34799999976543
No 220
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=73.17 E-value=3.8 Score=30.69 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=31.1
Q ss_pred cEEEEcCCCCc---------CCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCH-HHHHHHHH
Q 024696 79 RTVYVSDIDQQ---------VTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDE-EGARAALS 136 (264)
Q Consensus 79 ~~v~V~nLp~~---------~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~-~~a~~Ai~ 136 (264)
-++.|-|+|.. .+.++|.+.|+.|.+++ ++...+...+.|++.|+|... .-=..|+.
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 35666666533 35588999999999875 566666666779999999643 33344444
No 221
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=72.69 E-value=17 Score=25.48 Aligned_cols=56 Identities=21% Similarity=0.240 Sum_probs=43.6
Q ss_pred EEEeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCCceeEEEEEECCHHHHHHHHH
Q 024696 178 IYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN 234 (264)
Q Consensus 178 l~V~nL~~~~te~~L~~~F~~~~G-~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~ 234 (264)
-|.--.+...+..++++.++..|| .|.+|....-++ ...-|+|++..-++|.....
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~-~~KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK-GEKKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-CcEEEEEEeCCCCcHHHHHH
Confidence 444456788999999999999888 789998776542 23479999999888877654
No 222
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=72.15 E-value=20 Score=24.76 Aligned_cols=57 Identities=25% Similarity=0.292 Sum_probs=43.7
Q ss_pred eEEEeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCCceeEEEEEECCHHHHHHHHH
Q 024696 177 TIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN 234 (264)
Q Consensus 177 ~l~V~nL~~~~te~~L~~~F~~~~G-~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~ 234 (264)
.-|+-..+...+..+++..++..|| +|.+|....-++ ...-|+|++..-++|...-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~-~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR-GEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-CceEEEEEECCCCcHHHHHH
Confidence 3455567889999999999999888 788887766542 23479999988887776654
No 223
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=71.72 E-value=3.9 Score=40.38 Aligned_cols=40 Identities=25% Similarity=0.479 Sum_probs=29.2
Q ss_pred cCCCCcEEEEcCCCCcC-CHHHHHHHhhcCC--CeeEEEEecC
Q 024696 74 DEVIRRTVYVSDIDQQV-TEEQLATLFLTCG--QVVDCRICGD 113 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~-te~~L~~~F~~~G--~I~~v~i~~~ 113 (264)
....+|++++.+||.++ ++++|.++|.+.+ +|....++++
T Consensus 204 ~~~ssRTvlis~LP~~~~~~e~L~~~~~kl~~~~i~~~~l~~~ 246 (827)
T COG5594 204 NNLSSRTVLISGLPSELRSDEELKELFDKLKVGEIDSDVLCRD 246 (827)
T ss_pred cCCCCceEEeecCChhhcCchhHHHHHhhcCeeeeccchhhhh
Confidence 45688999999999884 6788999999654 4444444433
No 224
>cd08035 LARP_4 La RNA-binding domain of La-related protein 4. This domain is found in vertebrate La-related protein 4 (LARP4), also known as c-MPL binding protein. La-type domains often co-occur with RNA-recognition motifs (RRMs). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=66.74 E-value=3.8 Score=28.12 Aligned_cols=33 Identities=12% Similarity=0.111 Sum_probs=24.1
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhh
Q 024696 12 LEGYVCPLLLILSCFKLLVWLLVWYFLSLIKVLCLF 47 (264)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 47 (264)
-|||| ||-+|+++.+.......+-. +..+|+.-
T Consensus 29 ~~G~V-pi~~iasF~rik~lt~d~~~--I~~AL~~S 61 (75)
T cd08035 29 SDQFV-PIWTVANMEGIKKLTTDMDL--ILDVLRSS 61 (75)
T ss_pred cCCCE-ehHHHhccHHHHHhcCCHHH--HHHHHHcC
Confidence 39999 99999999988886544444 55555543
No 225
>cd08038 LARP_2 La RNA-binding domain of La-related protein 2. This domain is found in vertebrate La-related protein 2 (LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=61.68 E-value=5.1 Score=27.36 Aligned_cols=32 Identities=19% Similarity=0.334 Sum_probs=22.6
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 024696 12 LEGYVCPLLLILSCFKLLVWLLVWYFLSLIKVLCL 46 (264)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 46 (264)
-+||| ||.+|++|.+........ ..++.+|+.
T Consensus 29 ~~G~V-pl~~ia~F~rmk~lt~d~--~~I~~Al~~ 60 (73)
T cd08038 29 LQGFL-PISLIAGFYRVQALTTNV--DLILEALKD 60 (73)
T ss_pred CCCCE-eHHHHhcchHHHHhcCCH--HHHHHHHHc
Confidence 38999 999999999988755322 224555544
No 226
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=60.08 E-value=14 Score=27.63 Aligned_cols=47 Identities=19% Similarity=0.177 Sum_probs=26.3
Q ss_pred eEEEeCCCCC---------CCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECC
Q 024696 177 TIYCTNIDKK---------VTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAM 225 (264)
Q Consensus 177 ~l~V~nL~~~---------~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~ 225 (264)
++.|.|++.. .+-++|++.|+. |..++ ++...++...+|+++|+|.+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~-f~p~k-v~~l~~~~gh~g~aiv~F~~ 65 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAE-FNPLK-VKPLYGKQGHTGFAIVEFNK 65 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH----SE-EEEEEETTEEEEEEEEE--S
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHh-cCCce-eEECcCCCCCcEEEEEEECC
Confidence 4556666432 456889999999 57764 55555555578999999976
No 227
>cd08037 LARP_1 La RNA-binding domain of La-related protein 1. This domain is found in vertebrate La-related protein 1 (LARP1). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=59.22 E-value=5.9 Score=27.06 Aligned_cols=20 Identities=25% Similarity=0.536 Sum_probs=17.8
Q ss_pred CcchhhHHHHHHHHHHHHHHH
Q 024696 13 EGYVCPLLLILSCFKLLVWLL 33 (264)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~ 33 (264)
+||| ||-+|++|.+......
T Consensus 30 dG~V-pi~~ia~F~rmk~Lt~ 49 (73)
T cd08037 30 DGFL-PVTLIASFHRVQALTT 49 (73)
T ss_pred CCCE-eHHHHhcchHHHHhcC
Confidence 8999 9999999999988653
No 228
>cd08036 LARP_5 La RNA-binding domain of La-related protein 5. This domain is found in vertebrate La-related protein 5 (LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=56.53 E-value=7.6 Score=26.61 Aligned_cols=32 Identities=16% Similarity=0.191 Sum_probs=23.8
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 024696 12 LEGYVCPLLLILSCFKLLVWLLVWYFLSLIKVLCL 46 (264)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 46 (264)
-+|+| ||.+|+++.+........-. +..+|+.
T Consensus 29 ~~g~V-pi~~ia~F~rik~Lt~D~~l--I~~aL~~ 60 (75)
T cd08036 29 SDQYV-PIMTVANLDHIKKLSTDVDL--IVDVLRS 60 (75)
T ss_pred cCCCE-ehHHHhccHHHHHhcCCHHH--HHHHHhh
Confidence 48999 99999999999886643333 5555555
No 229
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.36 E-value=55 Score=31.31 Aligned_cols=77 Identities=19% Similarity=0.235 Sum_probs=57.7
Q ss_pred CCCCcEEEEcCCCCc-CCHHHHHHHhhcC----CCeeEEEEecCC-CC----------C---------------------
Q 024696 75 EVIRRTVYVSDIDQQ-VTEEQLATLFLTC----GQVVDCRICGDP-NS----------V--------------------- 117 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~-~te~~L~~~F~~~----G~I~~v~i~~~~-~~----------s--------------------- 117 (264)
...++.|=|.|+.|+ +.-.+|.-+|..| |.|.+|.|+... +. +
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 345678999999998 6778898888743 489999987632 00 0
Q ss_pred -----------------ceEEEEEecCHHHHHHHHH-hcCCCCCC--cceEEee
Q 024696 118 -----------------LRFAFVEFTDEEGARAALS-LAGTMLGF--YPVRVLP 151 (264)
Q Consensus 118 -----------------~G~afV~F~~~~~a~~Ai~-l~~~~~~g--~~l~V~~ 151 (264)
.=||.|+|.+.+.|....+ ++|..|.. ..+-+.+
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 1289999999999999998 99999874 4444444
No 230
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=49.38 E-value=48 Score=21.83 Aligned_cols=20 Identities=10% Similarity=0.240 Sum_probs=16.4
Q ss_pred HHHHHHhhcCCCeeEEEEec
Q 024696 93 EQLATLFLTCGQVVDCRICG 112 (264)
Q Consensus 93 ~~L~~~F~~~G~I~~v~i~~ 112 (264)
++|+++|+..|+|.-+.+-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 67999999999998666644
No 231
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.89 E-value=48 Score=30.23 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=45.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCc-eEEEEEeccCCCceeEEEEEECCHHHHHHHHHh
Q 024696 176 RTIYCTNIDKKVTQGDIKLFFESVCGE-VQRLRLLGDYQHSTRIAFVEFAMAESAIAALNC 235 (264)
Q Consensus 176 ~~l~V~nL~~~~te~~L~~~F~~~~G~-V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~l 235 (264)
..|-|.++|.....+||...|+. |++ =-+|+++-|. .||-.|++...|..|+.+
T Consensus 392 HVlEIydfp~efkteDll~~f~~-yq~kgfdIkWvDdt-----halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFET-YQNKGFDIKWVDDT-----HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHH-hhcCCceeEEeecc-----eeEEeecchHHHHHHhhc
Confidence 67889999999999999999998 564 3556665554 699999999999999986
No 232
>cd08032 LARP_7 La RNA-binding domain of La-related protein 7. LARP7 is a component of the 7SK snRNP, a key factor in the regulation of RNA polymerase II transcription. 7SK functionality is dependent on the presence of LARP7, which is thought to stabilize the 7SK RNA by interacting with its 3' end. The release of 7SK RNA from P-TEFb/HEXIM/7SK complexes activates the cyclin-dependent kinase P-TEFb, which in turn phosphorylates the C-terminal domain of RNA pol II and mediates a transition into productive transcription elongation.
Probab=47.88 E-value=12 Score=26.09 Aligned_cols=33 Identities=18% Similarity=0.132 Sum_probs=23.7
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhh
Q 024696 12 LEGYVCPLLLILSCFKLLVWLLVWYFLSLIKVLCLF 47 (264)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 47 (264)
-+||| ||-+|++|.+.......+- -++.+|..-
T Consensus 36 ~dG~V-pl~~i~~F~rmk~lt~d~~--~i~~Al~~S 68 (82)
T cd08032 36 RDGYI-DISLLVSFNKMKKLTTDGK--LIARALKNS 68 (82)
T ss_pred CCCCE-eHHHHhcchHHHHHcCCHH--HHHHHHhcC
Confidence 48999 9999999999988664332 245555543
No 233
>cd08034 LARP_1_2 La RNA-binding domain proteins similar to La-related proteins 1 and 2. This domain is found in proteins similar to vertebrate La-related proteins 1 and 2 (LARP1, LARP2). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=44.79 E-value=14 Score=25.20 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=17.4
Q ss_pred cCcchhhHHHHHHHHHHHHHH
Q 024696 12 LEGYVCPLLLILSCFKLLVWL 32 (264)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~ 32 (264)
-+||| ||.+|++|.+.....
T Consensus 29 ~~G~V-pl~~i~~F~rmk~l~ 48 (73)
T cd08034 29 PEGYL-PIALIASFHRVQALT 48 (73)
T ss_pred CCCCE-eHHHHhccHHHHHHc
Confidence 38999 999999999988754
No 234
>cd08033 LARP_6 La RNA-binding domain of La-related protein 6. This domain is found in animal and plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=44.14 E-value=14 Score=25.43 Aligned_cols=34 Identities=32% Similarity=0.372 Sum_probs=23.8
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhhc
Q 024696 12 LEGYVCPLLLILSCFKLLVWLLVWYFLSLIKVLCLFN 48 (264)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 48 (264)
-+|+| ||-+|++|.+.......+ ..++.+|..-.
T Consensus 31 ~dG~V-pl~~i~~F~rmk~l~~d~--~~I~~Al~~S~ 64 (77)
T cd08033 31 KEGYV-PIKLIASFKKVKALTRDW--RVVAAALRRSS 64 (77)
T ss_pred CCCcE-ehHHHhcchHHHHHcCCH--HHHHHHHHhCC
Confidence 38999 999999999998865322 23455555443
No 235
>PF14893 PNMA: PNMA
Probab=44.07 E-value=20 Score=32.04 Aligned_cols=52 Identities=19% Similarity=0.337 Sum_probs=33.3
Q ss_pred CCcEEEEcCCCCcCCHHHHHHHhhc-CCCeeEEEEecC---CCCCceEEEEEecCH
Q 024696 77 IRRTVYVSDIDQQVTEEQLATLFLT-CGQVVDCRICGD---PNSVLRFAFVEFTDE 128 (264)
Q Consensus 77 ~~~~v~V~nLp~~~te~~L~~~F~~-~G~I~~v~i~~~---~~~s~G~afV~F~~~ 128 (264)
..+.+-|.+||.++++++|++.+.. .-+.-..++... +..+..-|+|+|...
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~ 72 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAED 72 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccc
Confidence 4567999999999999999888763 222222333221 122235888888643
No 236
>smart00715 LA Domain in the RNA-binding Lupus La protein; unknown function.
Probab=44.05 E-value=13 Score=25.77 Aligned_cols=32 Identities=22% Similarity=0.210 Sum_probs=23.7
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhh
Q 024696 13 EGYVCPLLLILSCFKLLVWLLVWYFLSLIKVLCLF 47 (264)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 47 (264)
+|+| ||.+|++|.+.......+ ..++.++..-
T Consensus 34 ~g~V-pl~~i~~F~r~k~l~~d~--~~i~~Al~~S 65 (80)
T smart00715 34 DGYV-PISTIASFKRVKSLTTDV--NLIVEALRSS 65 (80)
T ss_pred CCCE-EhHHHhCchhHHHHcCCH--HHHHHHHHhC
Confidence 8999 999999999998866433 2355565544
No 237
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=43.75 E-value=48 Score=23.61 Aligned_cols=36 Identities=22% Similarity=0.304 Sum_probs=28.8
Q ss_pred EEEeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCC
Q 024696 178 IYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQ 213 (264)
Q Consensus 178 l~V~nL~~~~te~~L~~~F~~~~G-~V~~v~i~~~~~ 213 (264)
.++-..+...|..++++.++..|| .|.+|....-+|
T Consensus 22 ~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~g 58 (92)
T PRK05738 22 KYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKG 58 (92)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCC
Confidence 445567889999999999999899 788887766544
No 238
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=43.72 E-value=15 Score=24.10 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=16.4
Q ss_pred CcchhhHHHHHHHHHHHHHH
Q 024696 13 EGYVCPLLLILSCFKLLVWL 32 (264)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~ 32 (264)
||+| ||-.|++|-+.....
T Consensus 29 ~g~V-pi~~i~~F~r~k~l~ 47 (61)
T PF05383_consen 29 DGWV-PISTILSFNRMKALT 47 (61)
T ss_dssp TTBE-EHHHHTTSHHHHHH-
T ss_pred CCcE-eHHHHHchHHHHHHh
Confidence 8999 999999999987744
No 239
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=43.11 E-value=33 Score=29.81 Aligned_cols=46 Identities=15% Similarity=0.153 Sum_probs=35.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCce-EEEEEeccCCCceeEEEEEECCH
Q 024696 176 RTIYCTNIDKKVTQGDIKLFFESVCGEV-QRLRLLGDYQHSTRIAFVEFAMA 226 (264)
Q Consensus 176 ~~l~V~nL~~~~te~~L~~~F~~~~G~V-~~v~i~~~~~~~~g~afV~f~~~ 226 (264)
.-|+++||+.++...||+.-+.+. |-+ .++... .+.|-||+.|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~-~~~pm~iswk----g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKR-ECTPMSISWK----GHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhc-CCCceeEeee----cCCcceeEecCCc
Confidence 469999999999999999999984 643 455552 3456899999763
No 240
>cd08028 LARP_3 La RNA-binding domain of La-related protein 3. This domain is found at the N-terminus of the La autoantigen and similar proteins, and co-occurs with an RNA-recognition motif (RRM). Together these domains function to bind primary transcripts of RNA polymerase III at their 3' terminus and protect them from exonucleolytic degradation. Binding is specific for the 3'-terminal UUU-OH motif. The La autoantigen is also called Lupus La protein, LARP3, or Sjoegren syndrome type B antigen (SS-B).
Probab=42.02 E-value=15 Score=25.72 Aligned_cols=33 Identities=21% Similarity=0.187 Sum_probs=24.6
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhhc
Q 024696 13 EGYVCPLLLILSCFKLLVWLLVWYFLSLIKVLCLFN 48 (264)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 48 (264)
+||| ||-+|++|.+.......+ ..++.++..-.
T Consensus 35 ~G~V-pl~~i~~F~rmk~l~~d~--~~i~~Al~~S~ 67 (82)
T cd08028 35 DGWV-PMEVMLKFNRLKSLSSDP--EVIAKALKKSK 67 (82)
T ss_pred CCCE-EhHHHhCChhHHHhcCCH--HHHHHHHHhCC
Confidence 8999 999999999998865433 33566666554
No 241
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=40.81 E-value=25 Score=28.44 Aligned_cols=74 Identities=16% Similarity=0.207 Sum_probs=50.0
Q ss_pred ceEEEeCCCCCCC-HHH----HHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCe-eEEEe
Q 024696 176 RTIYCTNIDKKVT-QGD----IKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSL-PIRVS 248 (264)
Q Consensus 176 ~~l~V~nL~~~~t-e~~----L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~-~l~v~ 248 (264)
.++.+.+++..+. +.+ ...+|.+ |.+....++.+. .+...|-|.+.+.|..|.- +++..+.|+ .++.=
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq-~n~~~~fq~lrs----frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQ-INEDATFQLLRS----FRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhh-hCcchHHHHHHh----hceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 5567777776522 222 3345555 455554444443 3478899999999999997 999999888 77777
Q ss_pred ecCCCC
Q 024696 249 PSKTPV 254 (264)
Q Consensus 249 ~a~~~~ 254 (264)
++.+..
T Consensus 86 faQ~~~ 91 (193)
T KOG4019|consen 86 FAQPGH 91 (193)
T ss_pred EccCCC
Confidence 776653
No 242
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=40.39 E-value=39 Score=23.95 Aligned_cols=31 Identities=23% Similarity=0.183 Sum_probs=24.0
Q ss_pred EEEEECCHHHHHHHHHh--CCceeCCeeEEEee
Q 024696 219 AFVEFAMAESAIAALNC--SGAVLGSLPIRVSP 249 (264)
Q Consensus 219 afV~f~~~~~A~~Ai~l--~g~~~~g~~l~v~~ 249 (264)
|.|+|.+..-|++.+.+ +-..++++.+.|.-
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v 33 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKV 33 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEE
Confidence 68999999999999973 45566777666653
No 243
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=38.13 E-value=1.3e+02 Score=23.55 Aligned_cols=56 Identities=16% Similarity=0.225 Sum_probs=40.8
Q ss_pred EEEeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCCceeEEEEEECCHHHHHHHHH
Q 024696 178 IYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN 234 (264)
Q Consensus 178 l~V~nL~~~~te~~L~~~F~~~~G-~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~ 234 (264)
-|+--.+...+..+|++.++..|+ .|..|.....++ ..--|||.+....+|....+
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~-g~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPD-GLKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCC-CceEEEEEECCCCcHHHHHH
Confidence 444456788899999999998888 788887766543 22379999977776554433
No 244
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=38.08 E-value=37 Score=22.46 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=26.2
Q ss_pred CCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEE
Q 024696 90 VTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFV 123 (264)
Q Consensus 90 ~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV 123 (264)
.-+.+|...|-+-.+|.++.+...+.-.+|-|||
T Consensus 30 ~~e~eler~fl~~P~v~e~~l~EKKri~~G~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLPEVKEVALYEKKRIRKGAGYV 63 (64)
T ss_pred HHHHHhhhhccCCCCceEEEEEEEEeeeCCceeE
Confidence 3456788888888899999998877655577776
No 245
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=37.87 E-value=83 Score=22.26 Aligned_cols=49 Identities=20% Similarity=0.329 Sum_probs=35.9
Q ss_pred EEEeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCC------------ceeEEEEEECCH
Q 024696 178 IYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQH------------STRIAFVEFAMA 226 (264)
Q Consensus 178 l~V~nL~~~~te~~L~~~F~~~~G-~V~~v~i~~~~~~------------~~g~afV~f~~~ 226 (264)
-+.-..+..+|..||++.++..|| .|.+|....-.|+ ..-.|+|++...
T Consensus 22 ~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~ 83 (91)
T PF00276_consen 22 QYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEG 83 (91)
T ss_dssp EEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTT
T ss_pred EEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCC
Confidence 445567889999999999999999 7888876654321 113788888765
No 246
>CHL00030 rpl23 ribosomal protein L23
Probab=37.73 E-value=64 Score=23.10 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=29.7
Q ss_pred eEEEeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCC
Q 024696 177 TIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQH 214 (264)
Q Consensus 177 ~l~V~nL~~~~te~~L~~~F~~~~G-~V~~v~i~~~~~~ 214 (264)
.-|+--.+...+..++++.++..|| .|..|....-+++
T Consensus 20 n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt~~~~~k 58 (93)
T CHL00030 20 NQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNSHRLPRK 58 (93)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEcCCC
Confidence 3455567889999999999999888 7899887665543
No 247
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=37.56 E-value=72 Score=27.89 Aligned_cols=76 Identities=16% Similarity=0.242 Sum_probs=57.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC---------CCceeEEEEEECCHHHHHHHHH-----hCC--c
Q 024696 175 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY---------QHSTRIAFVEFAMAESAIAALN-----CSG--A 238 (264)
Q Consensus 175 ~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~---------~~~~g~afV~f~~~~~A~~Ai~-----l~g--~ 238 (264)
.+.|.+.|+..+++-.++...|-+ ||.|++|.++.+. .+......+.|-+.+.+....+ ++. .
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~-~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVK-FGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhc-cCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 477889999999999999999998 6999999998865 1234588999999887765553 222 3
Q ss_pred eeCCeeEEEeecC
Q 024696 239 VLGSLPIRVSPSK 251 (264)
Q Consensus 239 ~~~g~~l~v~~a~ 251 (264)
.+....|.++|..
T Consensus 94 ~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 94 KLKSESLTLSFVS 106 (309)
T ss_pred hcCCcceeEEEEE
Confidence 5667777777754
No 248
>cd08031 LARP_4_5_like La RNA-binding domain of proteins similar to La-related proteins 4 and 5. This domain is found in proteins similar to La-related proteins 4 and 5 (LARP4, LARP5). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=37.03 E-value=21 Score=24.52 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=22.5
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 024696 12 LEGYVCPLLLILSCFKLLVWLLVWYFLSLIKVLCL 46 (264)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 46 (264)
-+||| ||-+|++|.+....... ...++.+|+.
T Consensus 29 ~dG~V-pl~~i~~F~rmk~lt~d--~~~i~~Al~~ 60 (75)
T cd08031 29 SDQYV-PIWTIANFNKIKKLTTD--IDLIVEALRE 60 (75)
T ss_pred CCCCE-EHHHHhCchhHHHHcCC--HHHHHHHHHh
Confidence 38999 99999999999885422 2234555554
No 249
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=36.92 E-value=35 Score=29.53 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=30.3
Q ss_pred CCCCcEEEEcCCCCc------------CCHHHHHHHhhcCCCeeEEEEec
Q 024696 75 EVIRRTVYVSDIDQQ------------VTEEQLATLFLTCGQVVDCRICG 112 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~------------~te~~L~~~F~~~G~I~~v~i~~ 112 (264)
...+.+|++.+||-. -+++-|+..|..||+|..|.|+-
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 445668999999843 36788999999999999988863
No 250
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=35.75 E-value=76 Score=27.85 Aligned_cols=55 Identities=27% Similarity=0.351 Sum_probs=35.0
Q ss_pred EEEEecCHHHHHHHHH-hcCCCCCCcceEEeecCCCCCCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhh
Q 024696 121 AFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFE 197 (264)
Q Consensus 121 afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~ 197 (264)
|||+|++..+|..|.+ +.... ++.+.+..+ |+ .+-|.=.||.....+..++.++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~A------------Pe--------P~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPA------------PE--------PDDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeC------------CC--------cccccccccCCChHHHHHHHHHH
Confidence 7999999999999998 33322 345566665 11 13355567766666666665444
No 251
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=34.45 E-value=57 Score=26.45 Aligned_cols=78 Identities=15% Similarity=0.210 Sum_probs=53.7
Q ss_pred CcEEEEcCCCCcC-----CHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCc-ceEEe
Q 024696 78 RRTVYVSDIDQQV-----TEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFY-PVRVL 150 (264)
Q Consensus 78 ~~~v~V~nLp~~~-----te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~-~l~V~ 150 (264)
..++.+.+++..+ ......++|.+|.+.....+.+. .+..-|.|.+.+.|..|.- +.+..|.|. .++.-
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs----frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS----FRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh----hceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 3457777777553 22345667777776554444433 3688899999999999986 888888877 77777
Q ss_pred ecCCCCCCC
Q 024696 151 PSKTAIAPV 159 (264)
Q Consensus 151 ~s~~~~~~~ 159 (264)
+++......
T Consensus 86 faQ~~~~~~ 94 (193)
T KOG4019|consen 86 FAQPGHPES 94 (193)
T ss_pred EccCCCccc
Confidence 776544443
No 252
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=34.06 E-value=84 Score=29.73 Aligned_cols=60 Identities=18% Similarity=0.114 Sum_probs=44.6
Q ss_pred EEEeCCCCCCC---HHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHHhCCceeCCeeE
Q 024696 178 IYCTNIDKKVT---QGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPI 245 (264)
Q Consensus 178 l~V~nL~~~~t---e~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l 245 (264)
=+||||+.-.. ...+.++=++ ||.|-.+++... -.|.-++.+.|.+|+..+|..+.+|+.
T Consensus 35 PiIGnl~~l~~~~~h~~~~~ls~~-yGpi~tl~lG~~-------~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 35 PIIGNLHQLGSLPPHRSFRKLSKK-YGPVFTLRLGSV-------PVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred CccccHHHcCCCchhHHHHHHHHH-hCCeEEEEecCc-------eEEEECCHHHHHHHHHhCCccccCCCC
Confidence 35788876433 3445555456 899999988432 478889999999999888999988875
No 253
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=33.58 E-value=2.9e+02 Score=26.82 Aligned_cols=99 Identities=17% Similarity=0.136 Sum_probs=67.2
Q ss_pred CHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hc--CCCC------CCcceEEeecCCCCCCCCC
Q 024696 91 TEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LA--GTML------GFYPVRVLPSKTAIAPVNP 161 (264)
Q Consensus 91 te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~--~~~~------~g~~l~V~~s~~~~~~~~~ 161 (264)
--++|.+.|..-+.+..+.+... ||-.+......-+....+ +. +..+ .|+++.|.++...
T Consensus 59 iA~~i~~~l~~~~~~~~veiaGp-----gfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaN------ 127 (577)
T COG0018 59 IAEEIAEKLDTDEIIEKVEIAGP-----GFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSAN------ 127 (577)
T ss_pred HHHHHHHhccccCcEeEEEEcCC-----CEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCC------
Confidence 34556666665556777777633 566666554444444444 33 2222 4789999997432
Q ss_pred CCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCC
Q 024696 162 TFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQ 213 (264)
Q Consensus 162 ~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G-~V~~v~i~~~~~ 213 (264)
+...++||.+-..+==+.|..+++- .| .|.....+.|-|
T Consensus 128 ------------ptkplHiGHlR~aiiGDsLaril~~-~Gy~V~r~~yvnD~G 167 (577)
T COG0018 128 ------------PTGPLHIGHLRNAIIGDSLARILEF-LGYDVTRENYVNDWG 167 (577)
T ss_pred ------------CCCCcccchhhhhHHHHHHHHHHHH-cCCCeeEEeeECcHH
Confidence 3367899999888888999999996 68 788888888865
No 254
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=33.44 E-value=51 Score=29.81 Aligned_cols=66 Identities=20% Similarity=0.214 Sum_probs=46.7
Q ss_pred CCcEEEEcCCCCcCCHHHHHHHhhcCCC-eeEEEEec-CCC---CCceEEEEEecCHHHHHHHHH-hcCCCC
Q 024696 77 IRRTVYVSDIDQQVTEEQLATLFLTCGQ-VVDCRICG-DPN---SVLRFAFVEFTDEEGARAALS-LAGTML 142 (264)
Q Consensus 77 ~~~~v~V~nLp~~~te~~L~~~F~~~G~-I~~v~i~~-~~~---~s~G~afV~F~~~~~a~~Ai~-l~~~~~ 142 (264)
....|-|.+||+..+++++.+-...+-+ +....+.. +.+ .-.+.|||.|...++...... ++|..|
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 4567999999999999999888877542 22222221 111 125789999999999888877 888764
No 255
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=32.54 E-value=1.4e+02 Score=19.87 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=40.8
Q ss_pred HHHHHHhhhcCC-ceEEEEEeccC--CCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecCCC
Q 024696 190 GDIKLFFESVCG-EVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKTP 253 (264)
Q Consensus 190 ~~L~~~F~~~~G-~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~a~~~ 253 (264)
++|.+-|.. .| .|..+.-+... +.+-..-||+.+...+...+ ++=..++|..++|+..+..
T Consensus 2 ~~I~~~L~~-~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i--~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKD-QGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI--YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHH-cCCceEEEEccccCCCCCCceEEEEeeccCccccce--eehHhhCCeEEEEecCCCC
Confidence 567788887 48 67777655544 45666788887776552222 4566788889888875443
No 256
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=31.86 E-value=1.3e+02 Score=21.22 Aligned_cols=48 Identities=23% Similarity=0.286 Sum_probs=29.0
Q ss_pred CcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEec
Q 024696 78 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFT 126 (264)
Q Consensus 78 ~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~ 126 (264)
..-||||+++..+-|.--...-+..+.=.-+-+..+.+ ..||+|-...
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~n-eqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNN-EQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCC-CCCEEEEEeC
Confidence 45699999988766554444444444433334444444 5689988773
No 257
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=31.48 E-value=1.9e+02 Score=21.23 Aligned_cols=43 Identities=26% Similarity=0.383 Sum_probs=31.2
Q ss_pred HHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH
Q 024696 93 EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS 136 (264)
Q Consensus 93 ~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~ 136 (264)
.++..+++.+| |.+-.|.-|..++.-||++++.|.++.-.++.
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~~n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEEENLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCCcccEEEEEEEcChHHHHHHHh
Confidence 46778888887 56566666665566899999997776666654
No 258
>cd08029 LA_like_fungal La-motif domain of fungal proteins similar to the La autoantigen. This domain is found in fungal proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=31.29 E-value=20 Score=24.60 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=23.2
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhh
Q 024696 11 PLEGYVCPLLLILSCFKLLVWLLVWYFLSLIKVLCLF 47 (264)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 47 (264)
.-+||| ||-+|++|.+.....-. ..++.+|..-
T Consensus 30 ~~~G~V-pl~~i~~F~rmk~l~~~---~~i~~Al~~S 62 (76)
T cd08029 30 SNNGWV-PIKTIASFKRMRRFQPL---EAVVEALRES 62 (76)
T ss_pred CCCCcE-ehHHHhCchHHHHcCCH---HHHHHHHHhC
Confidence 358999 99999999999875421 3345555543
No 259
>cd07323 LAM LA motif RNA-binding domain. This domain is found at the N-terminus of La RNA-binding proteins as well as in other related proteins. Typically, the domain co-occurs with an RNA-recognition motif (RRM), and together these domains function to bind primary transcripts of RNA polymerase III in the La autoantigen (Lupus La protein, LARP3, or Sjoegren syndrome type B antigen, SS-B). A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=31.08 E-value=31 Score=23.59 Aligned_cols=34 Identities=21% Similarity=0.143 Sum_probs=24.3
Q ss_pred ccCcchhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhh
Q 024696 11 PLEGYVCPLLLILSCFKLLVWLLVWYFLSLIKVLCLF 47 (264)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 47 (264)
.-+|+| ||-+|++|.+........ .-++.++..-
T Consensus 28 ~~~g~V-pl~~i~~F~r~k~l~~~~--~~i~~Al~~s 61 (75)
T cd07323 28 DDDGWV-PLSLLASFNRVKKLTTDV--ELILEALRDS 61 (75)
T ss_pred CCCCCE-EHHHHhCchHHHHHcCCH--HHHHHHHHhC
Confidence 458999 999999999998855322 3355565543
No 260
>cd08030 LA_like_plant La-motif domain of plant proteins similar to the La autoantigen. This domain is found in plant proteins related to the La autoantigen. A variety of La-related proteins (LARPs or La ribonucleoproteins), with differing domain architecture, appear to function as RNA-binding proteins in eukaryotic cellular processes.
Probab=31.04 E-value=27 Score=24.86 Aligned_cols=20 Identities=35% Similarity=0.403 Sum_probs=17.9
Q ss_pred cCcchhhHHHHHHHHHHHHHH
Q 024696 12 LEGYVCPLLLILSCFKLLVWL 32 (264)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~ 32 (264)
-+||| ||-+|++|.+.....
T Consensus 32 ~dG~V-~i~~i~~F~rmk~l~ 51 (90)
T cd08030 32 PDGMV-SLALICSFSRMRSLL 51 (90)
T ss_pred CCCCE-ehHHHhcChHHHHHh
Confidence 48999 999999999998865
No 261
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.59 E-value=7.7 Score=35.59 Aligned_cols=85 Identities=7% Similarity=-0.115 Sum_probs=60.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 024696 176 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKT 252 (264)
Q Consensus 176 ~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~~ 252 (264)
...++..+|...+++++.-.|.. ||.|..+...+-. +-..-.+|++-.. .+|..+++ +.-..+.|-.+++..++.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d-~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHED-PSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccC-CcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 45567788899999999999999 7999988765532 2233456665443 45667776 777777888888888877
Q ss_pred CCCCCCCCCC
Q 024696 253 PVRPRAPRPP 262 (264)
Q Consensus 253 ~~~~~~~r~~ 262 (264)
....|..|++
T Consensus 82 s~~~r~k~~~ 91 (572)
T KOG4365|consen 82 SSEKRSKNPI 91 (572)
T ss_pred hhhhhhcCcc
Confidence 7666655444
No 262
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=29.06 E-value=1.5e+02 Score=27.27 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=29.2
Q ss_pred cCCceEEEeCCCCC-CCHHHHHHHhhhc--C-CceEEEEEec
Q 024696 173 MCSRTIYCTNIDKK-VTQGDIKLFFESV--C-GEVQRLRLLG 210 (264)
Q Consensus 173 ~~~~~l~V~nL~~~-~te~~L~~~F~~~--~-G~V~~v~i~~ 210 (264)
..++.|-|-||.+. +...+|.-+|+.| | |.+..|.|.+
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyp 185 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYP 185 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEech
Confidence 35578889999986 8889999988865 3 4777777754
No 263
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=28.50 E-value=1.4e+02 Score=20.66 Aligned_cols=33 Identities=12% Similarity=0.209 Sum_probs=21.7
Q ss_pred CeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcC
Q 024696 104 QVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAG 139 (264)
Q Consensus 104 ~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~ 139 (264)
.|.++....+ -+||-|||=.++.++..|++ +.+
T Consensus 33 ~I~Si~~~~~---lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 33 NIYSIFAPDS---LKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp ---EEEE-TT---STSEEEEEESSHHHHHHHHTT-TT
T ss_pred ceEEEEEeCC---CceEEEEEeCCHHHHHHHHhcccc
Confidence 4455444333 45999999999999999987 544
No 264
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=28.04 E-value=69 Score=29.00 Aligned_cols=65 Identities=12% Similarity=0.122 Sum_probs=48.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC----CCceeEEEEEECCHHHHHHHHH-hCCcee
Q 024696 176 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY----QHSTRIAFVEFAMAESAIAALN-CSGAVL 240 (264)
Q Consensus 176 ~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~----~~~~g~afV~f~~~~~A~~Ai~-l~g~~~ 240 (264)
..|.|.+||+..+++++.+-...+--.|....+.+.. ..--+.|+|.|...++...-.. .+|+.+
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 6788999999999999998888753345555554321 1235689999999999777777 888766
No 265
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=27.84 E-value=1.5e+02 Score=18.12 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=32.3
Q ss_pred HHHHHHHhhhcCC-ceEEEEEeccCCCceeEEEEEECCHHHHHHHH
Q 024696 189 QGDIKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMAESAIAAL 233 (264)
Q Consensus 189 e~~L~~~F~~~~G-~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai 233 (264)
-.++.+.+.+. | +|.++...... ...+...+.+++.+.|.+++
T Consensus 12 l~~i~~~l~~~-~inI~~~~~~~~~-~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 12 LAEVTEILAEA-GINIKAISIAETR-GEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHHc-CCCEeeEEEEEcc-CCcEEEEEEECCHHHHHHHh
Confidence 45677888874 5 88888876653 45668888889998888875
No 266
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=27.64 E-value=1.7e+02 Score=21.07 Aligned_cols=38 Identities=24% Similarity=0.361 Sum_probs=29.9
Q ss_pred eEEEeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCC
Q 024696 177 TIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQH 214 (264)
Q Consensus 177 ~l~V~nL~~~~te~~L~~~F~~~~G-~V~~v~i~~~~~~ 214 (264)
..|+-......|..+|+..++..|| +|..|....-+++
T Consensus 22 nk~vF~V~~~AtK~~IK~AvE~lF~VkV~kVNTl~~k~k 60 (94)
T COG0089 22 NKYVFIVDPDATKPEIKAAVEELFGVKVEKVNTLNTKGK 60 (94)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEEEEeCCc
Confidence 3445556788999999999998889 7999988776654
No 267
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=27.11 E-value=1.1e+02 Score=24.18 Aligned_cols=37 Identities=16% Similarity=0.332 Sum_probs=30.1
Q ss_pred eEEEeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCC
Q 024696 177 TIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQ 213 (264)
Q Consensus 177 ~l~V~nL~~~~te~~L~~~F~~~~G-~V~~v~i~~~~~ 213 (264)
..|+-.++...+-.+|+..++.+|| .|..|....-++
T Consensus 23 N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~~~~ 60 (158)
T PRK12280 23 NVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFNVDK 60 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEecCC
Confidence 3567778899999999999999899 788888766443
No 268
>COG3296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.78 E-value=1.1e+02 Score=23.26 Aligned_cols=41 Identities=12% Similarity=0.091 Sum_probs=25.5
Q ss_pred cCcchhhHH-HHHHHHHHHHHHHHHHHhhHHHHHhhhcccccc
Q 024696 12 LEGYVCPLL-LILSCFKLLVWLLVWYFLSLIKVLCLFNTAFQK 53 (264)
Q Consensus 12 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 53 (264)
+-|-+|-++ +|.+|+ .+.......++..+.++..|+|+..+
T Consensus 93 ~i~~ig~~l~li~il~-~~alsi~~lv~ti~a~~Ka~eGq~Yr 134 (143)
T COG3296 93 FIIIIGFFLTLIGILS-IFALSILSLVLTIIAAIKAYEGQEYR 134 (143)
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhCCceee
Confidence 334445444 777777 33334444455678889999998653
No 269
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=26.51 E-value=82 Score=21.06 Aligned_cols=24 Identities=13% Similarity=0.194 Sum_probs=19.2
Q ss_pred eEEEEEECCHHHHHHHHH-hCCcee
Q 024696 217 RIAFVEFAMAESAIAALN-CSGAVL 240 (264)
Q Consensus 217 g~afV~f~~~~~A~~Ai~-l~g~~~ 240 (264)
.+.+|.|.+..+|.+|-+ +....+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC
Confidence 368999999999999997 655444
No 270
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=26.28 E-value=1.3e+02 Score=22.58 Aligned_cols=44 Identities=16% Similarity=0.197 Sum_probs=26.8
Q ss_pred CCCHHHHHHHhhhcCCceEEEEE---eccC---CCceeEEEEEECCHHHHH
Q 024696 186 KVTQGDIKLFFESVCGEVQRLRL---LGDY---QHSTRIAFVEFAMAESAI 230 (264)
Q Consensus 186 ~~te~~L~~~F~~~~G~V~~v~i---~~~~---~~~~g~afV~f~~~~~A~ 230 (264)
.++.+||++-+.+.|-.-.++.+ ++.+ |++.|||.| |++.+.|.
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~ak 83 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAK 83 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHH
Confidence 47788888877766553223222 2222 568889987 56665554
No 271
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=25.94 E-value=1.7e+02 Score=24.06 Aligned_cols=59 Identities=14% Similarity=0.092 Sum_probs=37.2
Q ss_pred CCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH--hCCceeC--CeeEEEe
Q 024696 187 VTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN--CSGAVLG--SLPIRVS 248 (264)
Q Consensus 187 ~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~--l~g~~~~--g~~l~v~ 248 (264)
.+.++..++...+ +.-. +.| +..|...|.+.+-..|.++|..|++ +....++ +.++.|+
T Consensus 24 ~~~~~A~~~l~~~-~~p~-~Vi-KadGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvIE 86 (194)
T PF01071_consen 24 TDYEEALEYLEEQ-GYPY-VVI-KADGLAAGKGVVIADDREEALEALREIFVDRKFGDAGSKVVIE 86 (194)
T ss_dssp SSHHHHHHHHHHH-SSSE-EEE-EESSSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEEE
T ss_pred CCHHHHHHHHHhc-CCCc-eEE-ccCCCCCCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEEE
Confidence 3678888888875 4322 333 3334444456677799999999996 6655554 4455443
No 272
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=24.54 E-value=77 Score=20.25 Aligned_cols=15 Identities=33% Similarity=0.766 Sum_probs=12.0
Q ss_pred cchhhHHHHHHHHHH
Q 024696 14 GYVCPLLLILSCFKL 28 (264)
Q Consensus 14 ~~~~~~~~~~~~~~~ 28 (264)
-|.||+|+|-+||-+
T Consensus 12 d~~~~lLiliis~~f 26 (61)
T PF06692_consen 12 DYSGPLLILIISFVF 26 (61)
T ss_pred cchhHHHHHHHHHHH
Confidence 377899999999754
No 273
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=24.21 E-value=1.9e+02 Score=22.10 Aligned_cols=61 Identities=16% Similarity=0.161 Sum_probs=41.4
Q ss_pred CHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 024696 188 TQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKT 252 (264)
Q Consensus 188 te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~~ 252 (264)
+|.+|+..|- |.-+..++.+... ....+-++.+.+... ..++. +.+..+.|+++.|..-..
T Consensus 1 ~e~~lkAa~l--~nf~~f~~WP~~~-~~~~~~icv~g~~~~-~~~L~~l~~~~~~~~~i~v~~~~~ 62 (145)
T PF13689_consen 1 KEYQLKAAYL--YNFAKFIEWPDSA-PSSPFRICVLGDDPF-AEALSTLAGKQVGGRPIRVRRLSS 62 (145)
T ss_pred CHHHHHHHHH--HHhHhhccCCCCC-CCCCeEEEEECChHH-HHHHHHhhhcccCCCcEEEEECCC
Confidence 3667777775 5666777777663 222356666666553 34666 889999999999987543
No 274
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=23.73 E-value=1e+02 Score=23.49 Aligned_cols=43 Identities=21% Similarity=0.176 Sum_probs=32.4
Q ss_pred EEEcCCCCc-CCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEE
Q 024696 81 VYVSDIDQQ-VTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFV 123 (264)
Q Consensus 81 v~V~nLp~~-~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV 123 (264)
|.|.|||.. .+++-++.+-+.+|++.+++..........||-|
T Consensus 107 Vri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~~~~~~~~Rv 150 (153)
T PF14111_consen 107 VRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLKRTRLDFARV 150 (153)
T ss_pred hhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCCcccccEEEE
Confidence 889999987 6778888999999999988776554333345544
No 275
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=23.52 E-value=63 Score=18.77 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=10.3
Q ss_pred CcCCHHHHHHHhhcCCC
Q 024696 88 QQVTEEQLATLFLTCGQ 104 (264)
Q Consensus 88 ~~~te~~L~~~F~~~G~ 104 (264)
.++++++|++.|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 36889999999987653
No 276
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=22.87 E-value=13 Score=35.15 Aligned_cols=71 Identities=17% Similarity=0.127 Sum_probs=51.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEE
Q 024696 175 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIR 246 (264)
Q Consensus 175 ~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~ 246 (264)
.+++++.|++++++..+|..+++. +-.+..+.+..+. .+...+++|+|+-.-....|+. ||+..+..+.+.
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~-i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~s 304 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKG-IPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFLS 304 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhcc-CchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccccc
Confidence 357999999999999999999997 5666666655443 2345588999987666666665 677766655543
No 277
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=22.59 E-value=1.9e+02 Score=20.94 Aligned_cols=48 Identities=19% Similarity=0.241 Sum_probs=26.9
Q ss_pred CcEEEEcCCCCcCCHHHHHHHhh-cCCCeeEEEEecCCCCCceEEEEEecC
Q 024696 78 RRTVYVSDIDQQVTEEQLATLFL-TCGQVVDCRICGDPNSVLRFAFVEFTD 127 (264)
Q Consensus 78 ~~~v~V~nLp~~~te~~L~~~F~-~~G~I~~v~i~~~~~~s~G~afV~F~~ 127 (264)
..-||||+++..+-+. |.+... .++.=.-+-+..+.+ ..||+|-.+.+
T Consensus 27 ~~GVyVg~~S~rVRd~-lW~~v~~~~~~G~avmv~~~~~-eqG~~~~t~G~ 75 (97)
T PRK11558 27 RAGVYVGDVSRRIREM-IWQQVTQLAEEGNVVMAWATNT-ESGFEFQTFGE 75 (97)
T ss_pred CCCcEEcCCCHHHHHH-HHHHHHHhCCCCcEEEEEcCCC-CCCcEEEecCC
Confidence 4469999988765544 444443 444322223333333 33899888753
No 278
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=22.42 E-value=3.5e+02 Score=20.49 Aligned_cols=69 Identities=12% Similarity=0.120 Sum_probs=45.1
Q ss_pred ceEEEeCCCCC---CCHHHHHHHhhhcCC-ceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 176 RTIYCTNIDKK---VTQGDIKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 176 ~~l~V~nL~~~---~te~~L~~~F~~~~G-~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
-.|.|++.... .+...+.+.+++. | .++++..-.+ ...|.|++.++-.+|.+ +...--.+..|-+..+
T Consensus 36 pavQIs~~~~g~~~~~~~~v~~~L~~~-gI~~ksi~~~~~------~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~ 108 (127)
T PRK10629 36 STLAIRAVHQGASLPDGFYVYQHLDAN-GIHIKSITPEND------SLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDD 108 (127)
T ss_pred ceEEEecCCCCCccchHHHHHHHHHHC-CCCcceEEeeCC------EEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 34555544332 5677888899884 5 4555555332 78999999998888887 6555445566666654
Q ss_pred C
Q 024696 251 K 251 (264)
Q Consensus 251 ~ 251 (264)
.
T Consensus 109 p 109 (127)
T PRK10629 109 N 109 (127)
T ss_pred C
Confidence 4
No 279
>PF14893 PNMA: PNMA
Probab=21.72 E-value=99 Score=27.68 Aligned_cols=50 Identities=24% Similarity=0.441 Sum_probs=32.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEecc---CCCceeEEEEEECC
Q 024696 176 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD---YQHSTRIAFVEFAM 225 (264)
Q Consensus 176 ~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~---~~~~~g~afV~f~~ 225 (264)
+.+.|.++|.+|++++|.+.+....-.+-..++... .......|+|+|..
T Consensus 19 r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e 71 (331)
T PF14893_consen 19 RALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAE 71 (331)
T ss_pred hhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeeccc
Confidence 679999999999999999887753222333333221 11233478888865
No 280
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=21.70 E-value=72 Score=26.99 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=28.8
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEE
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDC 108 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v 108 (264)
.....++|+-|+|...+++.|.++.+++|-+..+
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 3456789999999999999999999999965543
No 281
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=21.67 E-value=1.3e+02 Score=26.02 Aligned_cols=34 Identities=12% Similarity=0.065 Sum_probs=26.5
Q ss_pred CcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEe
Q 024696 78 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRIC 111 (264)
Q Consensus 78 ~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~ 111 (264)
.....|+|||+.+|..-+.+++...-.+....++
T Consensus 95 ~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M 128 (259)
T COG0030 95 QPYKVVANLPYNISSPILFKLLEEKFIIQDMVLM 128 (259)
T ss_pred CCCEEEEcCCCcccHHHHHHHHhccCccceEEEE
Confidence 4578999999999999999999876555444443
No 282
>PF03742 PetN: PetN ; InterPro: IPR005497 PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or stability. It is found in bacteria and plants. Cytochrome b6-f complex is composed of 4 large subunits: cytochrome b6, subunit IV (17 kDa polypeptide, petD), cytochrome f and the Rieske protein, as well as 4 small subunits: petG, petL, petM and petN. The complex functions as a dimer. The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI) [].; GO: 0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity, 0017004 cytochrome complex assembly, 0009512 cytochrome b6f complex; PDB: 2ZT9_H 2D2C_H 2E76_H 1VF5_U 2E75_H 2E74_H.
Probab=21.65 E-value=63 Score=17.73 Aligned_cols=24 Identities=33% Similarity=0.786 Sum_probs=12.9
Q ss_pred ccccccCcchhhHHHHHHHHHHHHH
Q 024696 7 MDILPLEGYVCPLLLILSCFKLLVW 31 (264)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (264)
|||+-+ |.++...+.+...-+++|
T Consensus 1 mdiv~l-gWaal~~~ftfSlalVVW 24 (29)
T PF03742_consen 1 MDIVSL-GWAALMVVFTFSLALVVW 24 (29)
T ss_dssp -HHHCH-HHHHHHHHHHHHHHHHHH
T ss_pred Ccchhh-hHHHHHHHHhccceeEEE
Confidence 455443 566555555555556665
No 283
>PF11456 DUF3019: Protein of unknown function (DUF3019); InterPro: IPR021559 This is a bacterial family of uncharacterised proteins.
Probab=20.41 E-value=1.1e+02 Score=22.18 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=19.3
Q ss_pred hCCceeCCeeEEEeecCCCCCCCCCCCC
Q 024696 235 CSGAVLGSLPIRVSPSKTPVRPRAPRPP 262 (264)
Q Consensus 235 l~g~~~~g~~l~v~~a~~~~~~~~~r~~ 262 (264)
.++..+.+.+++|.+..++ .+|+.|+|
T Consensus 73 ~~~~~la~~~v~V~~~~~k-~Rrr~r~p 99 (102)
T PF11456_consen 73 DTGQPLAQVKVKVTWVSPK-VRRRRRNP 99 (102)
T ss_pred CCCcEEEEEEEEEEEeccC-cCCccCCC
Confidence 3566799999999999844 45555553
Done!