Query 024696
Match_columns 264
No_of_seqs 200 out of 2103
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 12:49:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024696.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024696hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 3.3E-36 1.1E-40 250.5 20.1 165 76-253 13-181 (213)
2 3md3_A Nuclear and cytoplasmic 100.0 1.8E-35 6.1E-40 235.1 20.5 161 79-252 1-166 (166)
3 1l3k_A Heterogeneous nuclear r 100.0 3E-35 1E-39 240.5 20.7 179 73-260 8-190 (196)
4 2qfj_A FBP-interacting repress 100.0 2.5E-34 8.6E-39 238.4 22.3 181 74-258 24-210 (216)
5 1b7f_A Protein (SXL-lethal pro 100.0 1E-33 3.6E-38 225.6 20.4 159 77-250 2-168 (168)
6 1fxl_A Paraneoplastic encephal 100.0 1.3E-33 4.5E-38 224.5 20.9 158 78-250 2-167 (167)
7 3nmr_A Cugbp ELAV-like family 100.0 1.3E-33 4.3E-38 226.4 20.6 161 77-251 2-175 (175)
8 2cjk_A Nuclear polyadenylated 100.0 2.4E-34 8.4E-39 229.2 14.2 161 77-253 2-166 (167)
9 3tyt_A Heterogeneous nuclear r 100.0 5.7E-33 2E-37 229.7 19.3 170 77-250 3-204 (205)
10 1fje_B Nucleolin RBD12, protei 100.0 8.7E-34 3E-38 228.0 13.9 165 73-253 8-174 (175)
11 2yh0_A Splicing factor U2AF 65 100.0 1.7E-32 5.7E-37 224.5 20.4 174 77-255 3-196 (198)
12 2g4b_A Splicing factor U2AF 65 100.0 1.6E-32 5.6E-37 219.6 18.9 156 77-251 3-172 (172)
13 2adc_A Polypyrimidine tract-bi 100.0 6.6E-32 2.3E-36 226.9 22.4 174 74-254 30-229 (229)
14 1qm9_A Polypyrimidine tract-bi 100.0 4E-32 1.4E-36 222.7 17.9 171 77-254 2-198 (198)
15 3pgw_A U1-A; protein-RNA compl 100.0 1.6E-31 5.4E-36 230.9 22.5 173 74-251 5-281 (282)
16 2ghp_A U4/U6 snRNA-associated 100.0 3.1E-32 1.1E-36 236.4 18.1 163 72-256 35-200 (292)
17 3smz_A Protein raver-1, ribonu 100.0 4.9E-32 1.7E-36 234.3 19.0 167 77-255 94-266 (284)
18 2ghp_A U4/U6 snRNA-associated 100.0 3E-31 1E-35 230.2 18.7 169 77-253 116-291 (292)
19 3smz_A Protein raver-1, ribonu 100.0 1.5E-30 5.2E-35 224.9 21.1 155 75-255 19-177 (284)
20 3sde_A Paraspeckle component 1 100.0 1.4E-30 4.9E-35 222.9 19.8 156 74-254 18-180 (261)
21 2kn4_A Immunoglobulin G-bindin 99.9 3.4E-25 1.2E-29 175.4 14.6 146 107-254 2-151 (158)
22 4f25_A Polyadenylate-binding p 99.9 1E-23 3.5E-28 158.4 9.2 109 77-191 4-113 (115)
23 2i2y_A Fusion protein consists 99.9 6.3E-23 2.1E-27 161.1 14.0 140 110-254 5-149 (150)
24 4fxv_A ELAV-like protein 1; RN 99.9 3.7E-21 1.3E-25 140.5 11.5 79 174-253 18-99 (99)
25 2lea_A Serine/arginine-rich sp 99.8 8E-21 2.7E-25 146.5 8.8 123 119-257 5-131 (135)
26 4f25_A Polyadenylate-binding p 99.8 6.7E-20 2.3E-24 137.4 11.4 81 174-255 4-85 (115)
27 1whw_A Hypothetical protein ri 99.8 1.5E-19 5E-24 131.6 12.4 89 174-263 7-98 (99)
28 2lxi_A RNA-binding protein 10; 99.8 2E-20 6.7E-25 134.5 7.2 80 175-255 1-85 (91)
29 2d9p_A Polyadenylate-binding p 99.8 1.8E-19 6.1E-24 132.2 12.4 85 172-257 12-97 (103)
30 2cpz_A CUG triplet repeat RNA- 99.8 2.3E-19 7.8E-24 134.3 12.8 90 172-263 22-114 (115)
31 1rk8_A CG8781-PA, CG8781-PA pr 99.8 8.9E-20 3.1E-24 145.3 11.0 134 123-257 11-156 (165)
32 2cq3_A RNA-binding protein 9; 99.8 4.6E-19 1.6E-23 130.0 14.0 85 172-257 12-97 (103)
33 2cpf_A RNA binding motif prote 99.8 2.7E-19 9.3E-24 130.0 11.6 87 174-262 4-96 (98)
34 2cq0_A Eukaryotic translation 99.8 3.6E-19 1.2E-23 130.6 12.3 84 173-257 13-99 (103)
35 2cqi_A Nucleolysin TIAR; RNA r 99.8 6.2E-19 2.1E-23 129.3 13.5 85 173-258 13-98 (103)
36 2dnh_A Bruno-like 5, RNA bindi 99.8 4.4E-19 1.5E-23 130.5 12.6 85 172-257 12-101 (105)
37 4fxv_A ELAV-like protein 1; RN 99.8 1.5E-19 5.1E-24 132.0 9.9 77 77-153 18-97 (99)
38 2dnz_A Probable RNA-binding pr 99.8 5.3E-19 1.8E-23 127.6 12.7 84 174-258 4-90 (95)
39 2dgs_A DAZ-associated protein 99.8 5.5E-19 1.9E-23 128.6 12.7 83 174-257 9-93 (99)
40 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.6E-19 8.9E-24 131.0 10.9 85 173-258 10-97 (102)
41 2dgo_A Cytotoxic granule-assoc 99.8 8.4E-19 2.9E-23 131.2 13.9 85 173-258 13-100 (115)
42 3p5t_L Cleavage and polyadenyl 99.8 4.4E-20 1.5E-24 132.3 6.5 81 176-257 2-87 (90)
43 1x5t_A Splicing factor 3B subu 99.8 2.9E-19 1E-23 129.2 10.9 83 174-257 4-90 (96)
44 2hvz_A Splicing factor, argini 99.8 1.4E-19 4.8E-24 132.3 9.3 99 79-184 1-100 (101)
45 3s8s_A Histone-lysine N-methyl 99.8 4.4E-19 1.5E-23 131.9 12.0 79 174-253 5-86 (110)
46 2dnm_A SRP46 splicing factor; 99.8 2.8E-19 9.7E-24 131.1 10.8 88 173-262 11-101 (103)
47 3bs9_A Nucleolysin TIA-1 isofo 99.8 4.8E-19 1.6E-23 125.7 11.2 79 174-253 5-86 (87)
48 2do4_A Squamous cell carcinoma 99.8 1.3E-18 4.5E-23 126.9 13.3 82 173-255 15-98 (100)
49 2dgx_A KIAA0430 protein; RRM d 99.8 6.1E-19 2.1E-23 127.8 11.4 82 174-257 8-94 (96)
50 2dgv_A HnRNP M, heterogeneous 99.8 5E-19 1.7E-23 127.0 10.8 82 174-256 7-89 (92)
51 3md1_A Nuclear and cytoplasmic 99.8 9.7E-19 3.3E-23 123.0 11.9 78 176-254 2-82 (83)
52 1x5s_A Cold-inducible RNA-bind 99.8 5.6E-19 1.9E-23 129.3 10.7 85 173-258 10-97 (102)
53 2fy1_A RNA-binding motif prote 99.8 6.8E-19 2.3E-23 132.1 11.3 83 174-257 6-90 (116)
54 2lkz_A RNA-binding protein 5; 99.8 1.6E-19 5.5E-24 130.7 6.9 79 174-253 8-95 (95)
55 2cph_A RNA binding motif prote 99.8 1.6E-18 5.4E-23 127.9 12.5 85 172-257 12-101 (107)
56 2cqd_A RNA-binding region cont 99.8 3E-18 1E-22 128.4 14.0 88 172-261 14-104 (116)
57 1x4h_A RNA-binding protein 28; 99.8 1.8E-18 6.2E-23 128.4 12.4 84 173-257 13-105 (111)
58 1p27_B RNA-binding protein 8A; 99.8 1E-18 3.5E-23 128.8 10.9 82 173-255 21-105 (106)
59 2x1f_A MRNA 3'-END-processing 99.8 1.4E-18 4.7E-23 125.8 11.3 81 175-256 2-85 (96)
60 1x5u_A Splicing factor 3B subu 99.8 1.6E-18 5.6E-23 127.4 11.8 84 173-257 13-99 (105)
61 2do0_A HnRNP M, heterogeneous 99.8 3.4E-18 1.2E-22 127.6 13.7 81 173-254 13-95 (114)
62 2cpe_A RNA-binding protein EWS 99.8 1.3E-18 4.4E-23 129.7 11.3 88 173-262 13-111 (113)
63 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.8E-18 6.1E-23 126.8 11.8 82 73-154 10-92 (103)
64 1oo0_B CG8781-PA, drosophila Y 99.8 1.2E-18 4E-23 129.4 10.8 84 172-256 23-109 (110)
65 2cq3_A RNA-binding protein 9; 99.8 2.9E-18 1E-22 125.7 12.8 83 73-155 10-93 (103)
66 2dng_A Eukaryotic translation 99.8 3.1E-18 1.1E-22 125.6 12.9 83 173-257 13-97 (103)
67 2dgp_A Bruno-like 4, RNA bindi 99.8 1.4E-18 4.7E-23 128.1 11.0 83 173-256 11-99 (106)
68 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.2E-18 3.9E-23 123.2 9.9 77 174-251 6-85 (85)
69 2cqc_A Arginine/serine-rich sp 99.8 2.6E-18 8.8E-23 123.9 12.0 79 173-252 13-94 (95)
70 1sjq_A Polypyrimidine tract-bi 99.8 1.1E-18 3.7E-23 128.1 10.0 80 173-257 14-96 (105)
71 2err_A Ataxin-2-binding protei 99.8 8.2E-19 2.8E-23 130.2 9.3 81 172-253 26-107 (109)
72 1x4a_A Splicing factor, argini 99.8 7.6E-18 2.6E-22 124.8 14.4 83 173-257 20-103 (109)
73 2div_A TRNA selenocysteine ass 99.8 1.7E-18 5.8E-23 126.0 10.6 83 173-256 7-97 (99)
74 1x4c_A Splicing factor, argini 99.8 3.8E-18 1.3E-22 126.3 12.5 76 174-255 14-95 (108)
75 3lqv_A PRE-mRNA branch site pr 99.8 6.5E-19 2.2E-23 131.8 8.4 104 75-202 5-109 (115)
76 1wi8_A EIF-4B, eukaryotic tran 99.8 3.9E-18 1.3E-22 125.3 12.1 83 173-257 13-98 (104)
77 1u6f_A Tcubp1, RNA-binding pro 99.8 6E-18 2E-22 130.7 13.7 85 172-257 39-126 (139)
78 2jrs_A RNA-binding protein 39; 99.8 3.1E-18 1E-22 126.9 11.4 82 172-254 23-107 (108)
79 1s79_A Lupus LA protein; RRM, 99.8 1.9E-18 6.6E-23 126.9 10.2 81 73-153 6-87 (103)
80 2e5h_A Zinc finger CCHC-type a 99.8 3.4E-18 1.2E-22 123.1 11.3 78 173-251 14-94 (94)
81 4a8x_A RNA-binding protein wit 99.8 2.2E-18 7.4E-23 122.5 10.1 79 175-254 4-86 (88)
82 2dgo_A Cytotoxic granule-assoc 99.8 6.4E-18 2.2E-22 126.3 13.1 86 72-157 9-97 (115)
83 3s8s_A Histone-lysine N-methyl 99.8 2E-18 6.9E-23 128.3 10.2 78 76-153 4-84 (110)
84 2ywk_A Putative RNA-binding pr 99.8 3.2E-18 1.1E-22 123.5 10.8 79 173-252 14-94 (95)
85 2d9p_A Polyadenylate-binding p 99.8 5E-18 1.7E-22 124.4 12.0 82 74-155 11-93 (103)
86 2jwn_A Embryonic polyadenylate 99.8 2.8E-18 9.4E-23 130.1 10.8 85 172-257 33-119 (124)
87 2fc9_A NCL protein; structure 99.8 4.7E-18 1.6E-22 124.1 11.6 83 173-259 13-97 (101)
88 1x4b_A Heterogeneous nuclear r 99.8 5.2E-18 1.8E-22 127.1 12.0 86 173-259 25-112 (116)
89 2dhg_A TRNA selenocysteine ass 99.8 4E-18 1.4E-22 125.1 11.0 84 174-257 8-94 (104)
90 3ex7_B RNA-binding protein 8A; 99.8 2.5E-18 8.4E-23 130.7 10.1 84 173-257 20-106 (126)
91 2dgs_A DAZ-associated protein 99.8 8.4E-18 2.9E-22 122.3 12.5 82 74-155 6-89 (99)
92 2cqg_A TDP-43, TAR DNA-binding 99.8 1.2E-17 4.2E-22 122.3 13.5 84 173-258 13-98 (103)
93 2cpi_A CCR4-NOT transcription 99.8 4.3E-18 1.5E-22 126.7 11.2 81 174-255 14-103 (111)
94 1wf1_A RNA-binding protein RAL 99.8 2.7E-18 9.2E-23 127.5 9.9 77 174-257 26-104 (110)
95 2kt5_A RNA and export factor-b 99.8 1.4E-17 4.8E-22 126.2 14.1 86 173-259 33-120 (124)
96 3ucg_A Polyadenylate-binding p 99.8 5.1E-18 1.7E-22 120.9 10.9 78 175-253 6-85 (89)
97 2dgv_A HnRNP M, heterogeneous 99.8 5.3E-18 1.8E-22 121.6 11.0 81 75-155 5-86 (92)
98 2dh8_A DAZ-associated protein 99.8 3.6E-18 1.2E-22 125.6 10.3 83 173-256 14-98 (105)
99 2dnq_A RNA-binding protein 4B; 99.8 7.8E-18 2.7E-22 120.4 11.8 78 173-257 6-84 (90)
100 2ad9_A Polypyrimidine tract-bi 99.8 4.2E-18 1.4E-22 127.9 10.7 82 172-258 28-112 (119)
101 2wbr_A GW182, gawky, LD47780P; 99.8 3.4E-18 1.2E-22 120.3 9.4 72 77-152 6-78 (89)
102 1x4g_A Nucleolysin TIAR; struc 99.8 7.4E-18 2.5E-22 124.9 11.8 83 172-259 22-105 (109)
103 2kxn_B Transformer-2 protein h 99.8 3.8E-18 1.3E-22 130.5 10.5 82 172-254 43-127 (129)
104 2dnp_A RNA-binding protein 14; 99.8 8.3E-18 2.8E-22 120.2 11.6 80 173-259 7-87 (90)
105 2jvr_A Nucleolar protein 3; RN 99.8 2.3E-18 7.9E-23 128.1 8.9 78 174-254 27-106 (111)
106 2la6_A RNA-binding protein FUS 99.8 5.7E-18 2E-22 123.3 10.9 78 173-251 11-99 (99)
107 2err_A Ataxin-2-binding protei 99.8 2.2E-18 7.6E-23 127.8 8.8 83 72-154 23-106 (109)
108 2lxi_A RNA-binding protein 10; 99.8 8E-19 2.7E-23 126.0 6.2 77 78-154 1-82 (91)
109 2dnh_A Bruno-like 5, RNA bindi 99.8 1.3E-17 4.4E-22 122.6 12.8 82 74-155 11-97 (105)
110 2cph_A RNA binding motif prote 99.8 1E-17 3.5E-22 123.5 12.3 83 73-155 10-97 (107)
111 1s79_A Lupus LA protein; RRM, 99.8 2.6E-18 8.8E-23 126.2 8.9 78 174-252 10-88 (103)
112 2dnz_A Probable RNA-binding pr 99.8 1.3E-17 4.4E-22 120.3 12.5 80 76-155 3-85 (95)
113 3s7r_A Heterogeneous nuclear r 99.8 8E-18 2.7E-22 119.4 11.2 77 173-250 9-87 (87)
114 2dgt_A RNA-binding protein 30; 99.8 1.4E-17 4.8E-22 119.5 12.5 78 173-257 8-86 (92)
115 2dgx_A KIAA0430 protein; RRM d 99.8 4.6E-18 1.6E-22 123.2 9.9 79 76-155 7-90 (96)
116 2dnm_A SRP46 splicing factor; 99.8 5.8E-18 2E-22 124.1 10.5 83 73-155 8-93 (103)
117 2cq0_A Eukaryotic translation 99.8 5.8E-18 2E-22 124.0 10.5 84 72-155 9-95 (103)
118 3p5t_L Cleavage and polyadenyl 99.8 1.5E-18 5.3E-23 124.2 7.2 76 79-154 2-82 (90)
119 2cq1_A PTB-like protein L; RRM 99.8 1.5E-17 5E-22 121.7 12.4 80 173-257 13-95 (101)
120 1x4d_A Matrin 3; structural ge 99.8 3.9E-18 1.3E-22 124.8 9.3 78 173-255 13-94 (102)
121 1sjq_A Polypyrimidine tract-bi 99.8 3.8E-18 1.3E-22 125.2 9.2 78 74-155 12-92 (105)
122 2cpf_A RNA binding motif prote 99.7 4.3E-18 1.5E-22 123.6 9.5 80 76-155 3-88 (98)
123 2khc_A Testis-specific RNP-typ 99.7 8.3E-18 2.8E-22 126.3 11.3 79 172-251 37-118 (118)
124 3r27_A HnRNP L, heterogeneous 99.7 7.6E-18 2.6E-22 122.4 10.6 77 172-253 18-97 (100)
125 2do4_A Squamous cell carcinoma 99.7 1.2E-17 4.1E-22 121.7 11.8 81 74-154 13-95 (100)
126 1whw_A Hypothetical protein ri 99.7 1.2E-17 4.2E-22 121.4 11.8 81 75-155 5-88 (99)
127 2fy1_A RNA-binding motif prote 99.7 1.4E-17 4.9E-22 124.9 12.4 82 75-156 4-87 (116)
128 2wbr_A GW182, gawky, LD47780P; 99.7 6.8E-18 2.3E-22 118.8 9.7 73 174-251 6-79 (89)
129 2cpz_A CUG triplet repeat RNA- 99.7 1.2E-17 4E-22 124.9 11.8 86 70-155 17-105 (115)
130 3ns6_A Eukaryotic translation 99.7 1.2E-18 4E-23 127.3 6.0 79 174-253 5-93 (100)
131 2lkz_A RNA-binding protein 5; 99.7 2.4E-18 8.3E-23 124.4 7.6 80 75-154 6-94 (95)
132 2e5h_A Zinc finger CCHC-type a 99.7 6.3E-18 2.2E-22 121.7 9.8 81 73-153 11-94 (94)
133 3mdf_A Peptidyl-prolyl CIS-tra 99.7 5.3E-18 1.8E-22 119.7 9.1 79 75-153 4-85 (85)
134 3pgw_S U1-70K; protein-RNA com 99.7 1.5E-18 5.1E-23 158.4 7.9 82 173-255 100-184 (437)
135 2cqc_A Arginine/serine-rich sp 99.7 7.1E-18 2.4E-22 121.6 9.9 80 74-153 11-93 (95)
136 2cq4_A RNA binding motif prote 99.7 1.9E-18 6.6E-23 129.0 7.1 81 174-255 24-106 (114)
137 2jvo_A Nucleolar protein 3; nu 99.7 6.4E-18 2.2E-22 125.2 9.9 78 171-255 27-105 (108)
138 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.6E-17 5.3E-22 131.0 12.7 84 173-257 37-123 (156)
139 3ulh_A THO complex subunit 4; 99.7 1.3E-17 4.6E-22 122.9 11.6 78 173-251 27-106 (107)
140 3s7r_A Heterogeneous nuclear r 99.7 6.2E-18 2.1E-22 120.0 9.3 80 73-152 6-87 (87)
141 3bs9_A Nucleolysin TIA-1 isofo 99.7 5.8E-18 2E-22 120.1 9.1 78 76-153 4-84 (87)
142 2ywk_A Putative RNA-binding pr 99.7 5.2E-18 1.8E-22 122.4 9.0 80 74-153 12-93 (95)
143 2dgw_A Probable RNA-binding pr 99.7 1.5E-17 5.1E-22 119.1 11.3 79 174-254 9-88 (91)
144 2cpx_A Hypothetical protein FL 99.7 1.6E-17 5.6E-22 124.0 12.0 82 173-257 23-109 (115)
145 1x5u_A Splicing factor 3B subu 99.7 1.8E-17 6.2E-22 121.8 12.0 83 73-155 10-95 (105)
146 3r27_A HnRNP L, heterogeneous 99.7 9.3E-18 3.2E-22 121.9 10.2 78 73-154 16-96 (100)
147 2jrs_A RNA-binding protein 39; 99.7 1.8E-17 6.1E-22 122.7 12.0 84 70-153 18-104 (108)
148 1x5s_A Cold-inducible RNA-bind 99.7 1.2E-17 4.2E-22 122.1 10.8 82 74-155 8-92 (102)
149 2rs2_A Musashi-1, RNA-binding 99.7 1.5E-17 5.1E-22 123.4 11.4 83 172-255 22-106 (109)
150 3md1_A Nuclear and cytoplasmic 99.7 9.9E-18 3.4E-22 117.8 9.8 76 78-153 1-79 (83)
151 1why_A Hypothetical protein ri 99.7 2.4E-17 8.1E-22 119.5 12.1 77 173-254 15-94 (97)
152 2dis_A Unnamed protein product 99.7 1.4E-17 4.6E-22 123.3 11.0 83 174-257 7-96 (109)
153 2hvz_A Splicing factor, argini 99.7 5.5E-18 1.9E-22 123.8 8.7 77 176-256 1-78 (101)
154 2cqp_A RNA-binding protein 12; 99.7 6.2E-18 2.1E-22 122.7 8.9 80 173-253 13-95 (98)
155 1x4a_A Splicing factor, argini 99.7 2.2E-17 7.5E-22 122.3 12.0 81 74-155 18-99 (109)
156 2la6_A RNA-binding protein FUS 99.7 1.8E-17 6.2E-22 120.6 11.2 80 74-153 9-99 (99)
157 2ki2_A SS-DNA binding protein 99.7 1.4E-18 4.6E-23 124.3 5.1 81 176-258 2-85 (90)
158 2m2b_A RNA-binding protein 10; 99.7 5.4E-18 1.8E-22 129.9 8.6 82 172-255 20-110 (131)
159 1x5o_A RNA binding motif, sing 99.7 3.4E-17 1.2E-21 122.2 12.6 80 173-253 23-112 (114)
160 2dgp_A Bruno-like 4, RNA bindi 99.7 2.2E-17 7.4E-22 121.6 11.4 83 73-155 8-96 (106)
161 2nlw_A Eukaryotic translation 99.7 9.9E-18 3.4E-22 123.5 9.5 79 174-253 14-100 (105)
162 2cqh_A IGF-II mRNA-binding pro 99.7 7E-18 2.4E-22 121.3 8.5 79 174-258 7-88 (93)
163 2do0_A HnRNP M, heterogeneous 99.7 4E-17 1.4E-21 121.7 12.9 82 74-155 11-94 (114)
164 3n9u_C Cleavage and polyadenyl 99.7 1.3E-17 4.4E-22 131.6 10.7 79 174-253 54-137 (156)
165 2dgu_A Heterogeneous nuclear r 99.7 3.3E-17 1.1E-21 120.1 12.2 78 174-258 10-88 (103)
166 2cq1_A PTB-like protein L; RRM 99.7 2.5E-17 8.6E-22 120.4 11.4 79 74-156 11-92 (101)
167 1p27_B RNA-binding protein 8A; 99.7 2.3E-17 7.9E-22 121.4 11.3 80 75-154 20-102 (106)
168 1p1t_A Cleavage stimulation fa 99.7 5E-18 1.7E-22 124.5 7.6 81 174-255 7-90 (104)
169 2div_A TRNA selenocysteine ass 99.7 1.4E-17 5E-22 121.0 10.0 81 75-155 6-94 (99)
170 2cpd_A Apobec-1 stimulating pr 99.7 6.9E-17 2.3E-21 117.5 13.6 79 172-257 12-93 (99)
171 2x1f_A MRNA 3'-END-processing 99.7 1.4E-17 4.9E-22 120.4 9.8 77 78-154 2-81 (96)
172 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1E-17 3.6E-22 122.4 9.2 82 74-155 8-92 (102)
173 2dhg_A TRNA selenocysteine ass 99.7 2.9E-17 9.9E-22 120.5 11.6 82 74-155 5-90 (104)
174 2ad9_A Polypyrimidine tract-bi 99.7 2.6E-17 9E-22 123.5 11.5 78 75-156 28-108 (119)
175 1x5t_A Splicing factor 3B subu 99.7 1.3E-17 4.6E-22 120.4 9.5 80 76-155 3-86 (96)
176 2cpy_A RNA-binding protein 12; 99.7 7.1E-18 2.4E-22 126.1 8.2 81 173-254 13-95 (114)
177 3ns6_A Eukaryotic translation 99.7 4.9E-18 1.7E-22 124.0 7.2 79 75-153 3-91 (100)
178 1fjc_A Nucleolin RBD2, protein 99.7 1.2E-17 4.3E-22 120.6 9.3 81 173-257 14-95 (96)
179 1wez_A HnRNP H', FTP-3, hetero 99.7 1.2E-17 4.1E-22 122.4 9.2 84 173-258 13-97 (102)
180 2mss_A Protein (musashi1); RNA 99.7 6.2E-18 2.1E-22 116.6 7.2 73 177-250 1-75 (75)
181 2mss_A Protein (musashi1); RNA 99.7 8.2E-18 2.8E-22 116.0 7.9 73 80-152 1-75 (75)
182 1wex_A Hypothetical protein (r 99.7 2.6E-17 9.1E-22 121.0 10.8 80 173-257 13-95 (104)
183 2xnq_A Nuclear polyadenylated 99.7 3.8E-17 1.3E-21 118.6 11.5 76 172-254 19-96 (97)
184 3ucg_A Polyadenylate-binding p 99.7 1.8E-17 6.2E-22 118.0 9.6 78 77-154 5-84 (89)
185 1x4d_A Matrin 3; structural ge 99.7 1.1E-17 3.9E-22 122.3 8.6 76 75-154 12-91 (102)
186 2krb_A Eukaryotic translation 99.7 8.1E-18 2.8E-22 117.9 7.5 73 78-150 1-81 (81)
187 2j76_E EIF-4B, EIF4B, eukaryot 99.7 6.6E-18 2.2E-22 123.3 7.3 81 172-254 16-99 (100)
188 2voo_A Lupus LA protein; RNA-b 99.7 6.5E-18 2.2E-22 137.9 8.0 139 13-154 43-186 (193)
189 2a3j_A U1 small nuclear ribonu 99.7 2E-17 6.8E-22 126.0 10.2 81 173-255 27-112 (127)
190 2fc8_A NCL protein; structure 99.7 4.7E-17 1.6E-21 118.9 11.8 83 172-258 12-97 (102)
191 1x4h_A RNA-binding protein 28; 99.7 4.3E-17 1.5E-21 120.9 11.7 82 74-155 11-101 (111)
192 2ek1_A RNA-binding protein 12; 99.7 8.8E-18 3E-22 121.2 7.7 79 173-252 13-94 (95)
193 2cqd_A RNA-binding region cont 99.7 7.3E-17 2.5E-21 120.8 13.0 82 73-155 12-96 (116)
194 1x4e_A RNA binding motif, sing 99.7 4.6E-18 1.6E-22 120.1 6.1 77 174-251 4-83 (85)
195 1wi8_A EIF-4B, eukaryotic tran 99.7 3.3E-17 1.1E-21 120.3 10.9 80 75-155 12-94 (104)
196 4a8x_A RNA-binding protein wit 99.7 1.6E-17 5.5E-22 117.9 8.9 77 77-153 3-83 (88)
197 2kxn_B Transformer-2 protein h 99.7 3.2E-17 1.1E-21 125.3 11.1 82 73-154 41-125 (129)
198 2krb_A Eukaryotic translation 99.7 7.1E-18 2.4E-22 118.2 6.8 72 176-248 2-81 (81)
199 2cpi_A CCR4-NOT transcription 99.7 1.5E-17 5E-22 123.8 8.9 81 75-155 12-101 (111)
200 2kvi_A Nuclear polyadenylated 99.7 1.4E-17 4.9E-22 120.5 8.4 80 173-259 8-89 (96)
201 2kt5_A RNA and export factor-b 99.7 1.3E-16 4.4E-21 120.9 13.9 83 74-156 31-115 (124)
202 1wex_A Hypothetical protein (r 99.7 9.7E-17 3.3E-21 117.9 12.7 78 75-156 12-92 (104)
203 2dng_A Eukaryotic translation 99.7 5.1E-17 1.8E-21 119.0 11.2 81 74-155 11-93 (103)
204 2khc_A Testis-specific RNP-typ 99.7 1.5E-17 5.3E-22 124.8 8.6 82 72-153 34-118 (118)
205 2nlw_A Eukaryotic translation 99.7 1.4E-17 4.7E-22 122.7 8.1 80 74-153 11-98 (105)
206 3ulh_A THO complex subunit 4; 99.7 2.9E-17 9.9E-22 121.1 9.9 80 74-153 25-106 (107)
207 2e5j_A Methenyltetrahydrofolat 99.7 4.2E-17 1.4E-21 118.2 10.4 78 173-254 17-95 (97)
208 2dnq_A RNA-binding protein 4B; 99.7 8.3E-17 2.8E-21 115.0 11.7 75 75-155 5-80 (90)
209 2hgn_A Heterogeneous nuclear r 99.7 3E-18 1E-22 132.5 4.3 125 119-258 2-128 (139)
210 1wg5_A Heterogeneous nuclear r 99.7 7.4E-17 2.5E-21 118.5 11.6 81 173-254 13-95 (104)
211 1nu4_A U1A RNA binding domain; 99.7 1.8E-17 6.2E-22 119.9 8.2 81 173-255 6-91 (97)
212 2la4_A Nuclear and cytoplasmic 99.7 2.4E-17 8.2E-22 120.3 8.9 76 173-253 25-101 (101)
213 1oo0_B CG8781-PA, drosophila Y 99.7 3.4E-17 1.2E-21 121.4 9.5 80 75-154 23-105 (110)
214 2cpe_A RNA-binding protein EWS 99.7 4.9E-17 1.7E-21 121.1 10.3 83 73-155 10-103 (113)
215 1x4e_A RNA binding motif, sing 99.7 1.2E-17 4.1E-22 118.0 6.5 78 76-153 3-83 (85)
216 1wg5_A Heterogeneous nuclear r 99.7 9.2E-17 3.1E-21 118.0 11.5 81 74-154 11-93 (104)
217 1wez_A HnRNP H', FTP-3, hetero 99.7 3.2E-17 1.1E-21 120.1 8.9 81 74-155 11-92 (102)
218 1p1t_A Cleavage stimulation fa 99.7 1.5E-17 5.1E-22 122.0 7.1 78 76-153 6-86 (104)
219 2ytc_A PRE-mRNA-splicing facto 99.7 4.2E-17 1.4E-21 115.1 9.2 76 74-153 8-85 (85)
220 2cpj_A Non-POU domain-containi 99.7 8.8E-17 3E-21 116.9 11.1 78 173-255 13-91 (99)
221 3lqv_A PRE-mRNA branch site pr 99.7 4.7E-17 1.6E-21 121.6 9.8 79 174-254 7-86 (115)
222 2e5j_A Methenyltetrahydrofolat 99.7 8.3E-17 2.9E-21 116.6 10.8 78 74-154 15-93 (97)
223 2rs2_A Musashi-1, RNA-binding 99.7 4.2E-17 1.5E-21 120.9 9.4 83 72-154 19-103 (109)
224 2cq4_A RNA binding motif prote 99.7 1.9E-17 6.6E-22 123.6 7.6 80 74-153 21-102 (114)
225 2cpj_A Non-POU domain-containi 99.7 7.2E-17 2.4E-21 117.4 10.4 78 73-154 10-88 (99)
226 2cqg_A TDP-43, TAR DNA-binding 99.7 1.2E-16 4.2E-21 117.0 11.7 83 72-155 9-93 (103)
227 2dh8_A DAZ-associated protein 99.7 3.6E-17 1.2E-21 120.2 8.8 83 73-155 11-95 (105)
228 2dnn_A RNA-binding protein 12; 99.7 4.7E-17 1.6E-21 120.6 9.4 76 175-252 16-92 (109)
229 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.2E-16 4E-21 123.4 12.0 78 172-250 60-140 (140)
230 1why_A Hypothetical protein ri 99.7 1.2E-16 4.2E-21 115.7 11.4 76 75-154 14-92 (97)
231 2ytc_A PRE-mRNA-splicing facto 99.7 1E-16 3.6E-21 113.0 10.8 74 173-251 10-85 (85)
232 2dgw_A Probable RNA-binding pr 99.7 7.8E-17 2.7E-21 115.3 10.1 80 74-154 6-86 (91)
233 2db1_A Heterogeneous nuclear r 99.7 3.2E-17 1.1E-21 123.3 8.4 79 174-253 16-98 (118)
234 3ex7_B RNA-binding protein 8A; 99.7 7.8E-17 2.7E-21 122.3 10.6 82 75-156 19-103 (126)
235 2db1_A Heterogeneous nuclear r 99.7 3.1E-17 1.1E-21 123.4 8.1 80 74-153 13-96 (118)
236 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2E-17 6.9E-22 114.5 6.5 73 176-250 1-76 (77)
237 2jvr_A Nucleolar protein 3; RN 99.7 2.7E-17 9.2E-22 122.3 7.4 77 75-153 25-103 (111)
238 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.2E-17 7.5E-22 120.5 6.9 79 74-153 15-96 (100)
239 1fj7_A Nucleolin RBD1, protein 99.7 1.5E-17 5.3E-22 121.3 6.0 81 174-256 16-98 (101)
240 3beg_B Splicing factor, argini 99.7 6.7E-17 2.3E-21 121.0 9.7 76 174-255 15-96 (115)
241 3n9u_C Cleavage and polyadenyl 99.7 5.4E-17 1.8E-21 128.0 9.5 78 76-153 53-135 (156)
242 1u6f_A Tcubp1, RNA-binding pro 99.7 1.6E-16 5.5E-21 122.6 12.0 84 72-155 36-122 (139)
243 2jwn_A Embryonic polyadenylate 99.7 2.3E-17 7.9E-22 124.9 7.1 80 75-154 33-114 (124)
244 2cpy_A RNA-binding protein 12; 99.7 3.5E-17 1.2E-21 122.3 7.9 81 74-154 11-93 (114)
245 2dis_A Unnamed protein product 99.7 1.6E-16 5.4E-21 117.5 11.4 80 76-155 6-92 (109)
246 1uaw_A Mouse-musashi-1; RNP-ty 99.7 2.7E-17 9.2E-22 113.8 6.6 73 79-152 1-76 (77)
247 1x4g_A Nucleolysin TIAR; struc 99.7 1.1E-16 3.8E-21 118.5 10.3 78 74-155 21-99 (109)
248 1iqt_A AUF1, heterogeneous nuc 99.7 1.6E-17 5.3E-22 114.5 5.2 73 177-250 1-75 (75)
249 2cqp_A RNA-binding protein 12; 99.7 4.5E-17 1.5E-21 118.1 7.8 79 75-153 12-93 (98)
250 2lea_A Serine/arginine-rich sp 99.7 6.5E-17 2.2E-21 124.5 9.1 84 72-155 41-127 (135)
251 2hgl_A HNRPF protein, heteroge 99.7 3.4E-17 1.2E-21 126.1 7.5 79 174-253 43-125 (136)
252 2hgl_A HNRPF protein, heteroge 99.7 4E-17 1.4E-21 125.7 7.8 80 74-153 40-123 (136)
253 1x5o_A RNA binding motif, sing 99.7 3.1E-16 1E-20 116.9 12.4 81 73-153 20-110 (114)
254 1x4c_A Splicing factor, argini 99.7 2.6E-16 8.7E-21 116.4 11.9 76 75-155 12-93 (108)
255 2a3j_A U1 small nuclear ribonu 99.7 1.2E-16 4E-21 121.7 10.2 78 75-153 26-108 (127)
256 2lmi_A GRSF-1, G-rich sequence 99.7 3.3E-17 1.1E-21 121.0 6.8 80 74-153 7-90 (107)
257 2la4_A Nuclear and cytoplasmic 99.7 6.9E-17 2.4E-21 117.9 8.4 75 75-153 24-99 (101)
258 2ki2_A SS-DNA binding protein 99.7 1.6E-17 5.6E-22 118.6 5.0 76 79-155 2-80 (90)
259 2ek1_A RNA-binding protein 12; 99.7 2.7E-17 9.2E-22 118.6 6.1 79 75-153 12-93 (95)
260 1whx_A Hypothetical protein ri 99.7 9.9E-17 3.4E-21 119.3 9.3 77 76-156 8-85 (111)
261 2jvo_A Nucleolar protein 3; nu 99.7 1.1E-16 3.6E-21 118.6 9.3 78 71-154 24-102 (108)
262 1iqt_A AUF1, heterogeneous nuc 99.7 2.6E-17 8.9E-22 113.4 5.6 73 80-152 1-75 (75)
263 2dnn_A RNA-binding protein 12; 99.7 5.8E-17 2E-21 120.1 7.9 76 77-153 15-91 (109)
264 1whx_A Hypothetical protein ri 99.7 1.5E-16 5.2E-21 118.3 10.0 77 174-255 9-86 (111)
265 1x4f_A Matrin 3; structural ge 99.7 1.8E-16 6.2E-21 117.7 10.3 79 172-255 22-104 (112)
266 2dnp_A RNA-binding protein 14; 99.7 1.6E-16 5.4E-21 113.5 9.6 76 74-155 5-81 (90)
267 2kn4_A Immunoglobulin G-bindin 99.7 1.9E-16 6.4E-21 124.9 10.9 82 74-155 66-150 (158)
268 1x4b_A Heterogeneous nuclear r 99.7 7.6E-17 2.6E-21 120.7 8.2 81 75-155 24-106 (116)
269 1h2v_Z 20 kDa nuclear CAP bind 99.7 1.4E-16 4.8E-21 125.5 10.0 82 73-154 34-118 (156)
270 2xnq_A Nuclear polyadenylated 99.7 1.8E-16 6.3E-21 115.0 9.8 74 74-153 18-93 (97)
271 2m2b_A RNA-binding protein 10; 99.7 6.6E-17 2.3E-21 123.8 7.8 81 74-155 19-108 (131)
272 2lmi_A GRSF-1, G-rich sequence 99.7 3.2E-17 1.1E-21 121.1 5.8 79 174-253 10-92 (107)
273 2dgt_A RNA-binding protein 30; 99.7 2.9E-16 1E-20 112.6 10.7 76 74-155 6-82 (92)
274 1wel_A RNA-binding protein 12; 99.7 6E-17 2E-21 122.8 7.4 80 74-153 21-102 (124)
275 3zzy_A Polypyrimidine tract-bi 99.7 2.8E-16 9.5E-21 119.5 11.0 76 175-254 28-107 (130)
276 2xs2_A Deleted in azoospermia- 99.7 6.7E-17 2.3E-21 118.1 7.3 80 174-255 8-88 (102)
277 2dgu_A Heterogeneous nuclear r 99.7 3.2E-16 1.1E-20 114.8 10.9 76 75-156 8-84 (103)
278 2e5g_A U6 snRNA-specific termi 99.7 3E-16 1E-20 113.0 10.6 78 75-155 5-82 (94)
279 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.5E-16 5.2E-21 122.7 9.6 80 73-152 58-140 (140)
280 2kvi_A Nuclear polyadenylated 99.7 1.6E-16 5.4E-21 115.0 9.1 76 74-155 6-83 (96)
281 2fc9_A NCL protein; structure 99.7 2.1E-16 7.3E-21 115.2 9.8 79 74-155 11-91 (101)
282 1x4f_A Matrin 3; structural ge 99.7 1.4E-16 4.9E-21 118.2 8.9 76 75-154 22-101 (112)
283 1wel_A RNA-binding protein 12; 99.7 6.3E-17 2.1E-21 122.7 7.0 80 173-253 23-104 (124)
284 2e5g_A U6 snRNA-specific termi 99.7 5E-16 1.7E-20 111.8 11.4 78 174-255 7-84 (94)
285 1fxl_A Paraneoplastic encephal 99.7 4.1E-16 1.4E-20 123.0 11.9 80 175-255 2-84 (167)
286 3egn_A RNA-binding protein 40; 99.7 9E-17 3.1E-21 124.8 7.9 81 174-256 44-133 (143)
287 2i2y_A Fusion protein consists 99.7 2.9E-16 9.8E-21 122.9 10.6 78 73-153 68-146 (150)
288 1b7f_A Protein (SXL-lethal pro 99.7 3.5E-16 1.2E-20 123.8 10.9 83 174-257 2-87 (168)
289 1wg1_A KIAA1579 protein, homol 99.7 2.1E-16 7.2E-21 112.4 8.7 75 174-254 4-79 (88)
290 1x5p_A Negative elongation fac 99.7 1.4E-15 4.9E-20 110.0 13.2 77 173-256 13-90 (97)
291 1sjr_A Polypyrimidine tract-bi 99.7 2.9E-16 9.9E-21 123.8 10.2 77 175-254 46-125 (164)
292 2cpd_A Apobec-1 stimulating pr 99.7 7.8E-16 2.7E-20 111.8 11.6 76 74-155 11-89 (99)
293 2e44_A Insulin-like growth fac 99.7 5.1E-16 1.7E-20 112.1 10.5 78 174-254 14-93 (96)
294 2lcw_A RNA-binding protein FUS 99.5 5.5E-18 1.9E-22 127.0 0.0 82 174-256 6-98 (116)
295 2cpx_A Hypothetical protein FL 99.7 6.6E-16 2.3E-20 115.2 11.4 79 75-155 22-105 (115)
296 3q2s_C Cleavage and polyadenyl 99.7 1.7E-16 5.9E-21 132.9 8.9 79 174-253 67-150 (229)
297 1nu4_A U1A RNA binding domain; 99.7 8.2E-17 2.8E-21 116.5 5.7 79 75-154 5-88 (97)
298 2hgm_A HNRPF protein, heteroge 99.7 1.9E-16 6.5E-21 120.2 7.8 79 74-153 38-119 (126)
299 3md3_A Nuclear and cytoplasmic 99.7 7.6E-16 2.6E-20 121.3 11.7 80 176-256 1-82 (166)
300 2e5i_A Heterogeneous nuclear r 99.7 1.6E-15 5.4E-20 114.7 12.8 74 176-254 26-103 (124)
301 2hgm_A HNRPF protein, heteroge 99.7 1.5E-16 5.1E-21 120.8 7.1 78 174-253 41-121 (126)
302 2e44_A Insulin-like growth fac 99.7 5.5E-16 1.9E-20 111.9 9.8 78 75-154 12-91 (96)
303 3d2w_A TAR DNA-binding protein 99.7 5.5E-16 1.9E-20 110.6 9.6 78 173-255 9-86 (89)
304 1wf1_A RNA-binding protein RAL 99.7 6.5E-16 2.2E-20 114.5 10.3 73 76-154 25-99 (110)
305 2f3j_A RNA and export factor b 99.7 3.1E-16 1E-20 126.2 9.0 84 173-257 86-171 (177)
306 1wf0_A TDP-43, TAR DNA-binding 99.7 2.8E-16 9.5E-21 111.7 7.8 79 174-257 4-82 (88)
307 1fjc_A Nucleolin RBD2, protein 99.7 1.4E-16 4.8E-21 115.0 6.4 78 74-154 12-90 (96)
308 2cq2_A Hypothetical protein LO 99.6 5.1E-16 1.8E-20 115.4 9.4 77 174-255 24-108 (114)
309 2dha_A FLJ20171 protein; RRM d 99.6 1.4E-16 4.8E-21 120.6 6.4 79 173-252 21-104 (123)
310 4f02_A Polyadenylate-binding p 99.6 9.3E-16 3.2E-20 126.8 11.9 80 174-254 14-96 (213)
311 2diu_A KIAA0430 protein; struc 99.6 1.1E-15 3.9E-20 108.5 10.3 72 175-255 8-86 (96)
312 2dha_A FLJ20171 protein; RRM d 99.6 2E-16 6.8E-21 119.7 6.7 79 75-153 20-103 (123)
313 1fj7_A Nucleolin RBD1, protein 99.6 1.1E-16 3.9E-21 116.7 5.2 79 75-154 14-94 (101)
314 1wg1_A KIAA1579 protein, homol 99.6 2.9E-16 9.9E-21 111.7 7.0 73 77-154 4-77 (88)
315 2hgn_A Heterogeneous nuclear r 99.6 1.2E-16 4.1E-21 123.4 5.3 80 74-154 42-122 (139)
316 2cqh_A IGF-II mRNA-binding pro 99.6 5.3E-16 1.8E-20 111.4 8.2 76 75-155 5-83 (93)
317 2voo_A Lupus LA protein; RNA-b 99.6 2E-15 6.8E-20 123.1 12.6 120 127-254 63-188 (193)
318 1sjr_A Polypyrimidine tract-bi 99.6 1.7E-15 5.9E-20 119.4 11.5 79 75-155 43-124 (164)
319 1l3k_A Heterogeneous nuclear r 99.6 1.6E-15 5.4E-20 123.0 11.6 81 174-255 12-94 (196)
320 2g4b_A Splicing factor U2AF 65 99.6 1.1E-15 3.8E-20 121.4 10.3 79 74-152 90-171 (172)
321 3q2s_C Cleavage and polyadenyl 99.6 6.1E-16 2.1E-20 129.5 9.1 77 77-153 67-148 (229)
322 2cq2_A Hypothetical protein LO 99.6 7.2E-16 2.4E-20 114.6 8.3 75 76-154 23-105 (114)
323 2bz2_A Negative elongation fac 99.6 9.3E-16 3.2E-20 115.8 8.9 78 173-257 37-115 (121)
324 3tyt_A Heterogeneous nuclear r 99.6 1.9E-15 6.6E-20 124.4 11.4 76 174-253 3-80 (205)
325 1rk8_A CG8781-PA, CG8781-PA pr 99.6 1.3E-15 4.6E-20 121.0 9.9 80 76-155 70-152 (165)
326 2xs2_A Deleted in azoospermia- 99.6 2.4E-16 8.1E-21 115.2 5.0 78 75-153 6-84 (102)
327 2fc8_A NCL protein; structure 99.6 1.9E-15 6.5E-20 110.3 9.6 79 74-155 11-92 (102)
328 3zzy_A Polypyrimidine tract-bi 99.6 1.6E-15 5.4E-20 115.3 9.2 77 76-155 26-106 (130)
329 2f3j_A RNA and export factor b 99.6 1.6E-15 5.5E-20 122.0 9.8 80 76-155 86-167 (177)
330 3d2w_A TAR DNA-binding protein 99.6 9E-16 3.1E-20 109.5 7.4 73 75-153 8-82 (89)
331 3beg_B Splicing factor, argini 99.6 1.8E-15 6E-20 113.2 9.2 73 77-154 15-93 (115)
332 2hzc_A Splicing factor U2AF 65 99.6 1.3E-15 4.3E-20 107.8 7.7 72 76-151 4-86 (87)
333 1x5p_A Negative elongation fac 99.6 6.2E-15 2.1E-19 106.7 11.5 76 74-155 11-87 (97)
334 3egn_A RNA-binding protein 40; 99.6 6.6E-16 2.3E-20 119.8 6.7 80 75-155 42-130 (143)
335 2lcw_A RNA-binding protein FUS 99.4 4.7E-17 1.6E-21 121.8 0.0 81 74-154 3-94 (116)
336 2pe8_A Splicing factor 45; RRM 99.6 4.9E-15 1.7E-19 108.9 10.7 79 173-252 6-93 (105)
337 2hzc_A Splicing factor U2AF 65 99.6 3.1E-15 1.1E-19 105.8 9.3 71 174-249 5-86 (87)
338 2e5i_A Heterogeneous nuclear r 99.6 9.6E-15 3.3E-19 110.4 12.2 74 78-155 25-102 (124)
339 2qfj_A FBP-interacting repress 99.6 5.7E-15 1.9E-19 121.6 11.8 82 75-156 122-206 (216)
340 3nmr_A Cugbp ELAV-like family 99.6 1.2E-14 4.1E-19 115.5 12.2 78 75-152 92-174 (175)
341 2diu_A KIAA0430 protein; struc 99.6 5.9E-15 2E-19 104.8 9.2 69 79-155 10-84 (96)
342 2dnl_A Cytoplasmic polyadenyla 99.6 7.7E-15 2.6E-19 109.4 10.2 75 75-152 5-85 (114)
343 3pgw_S U1-70K; protein-RNA com 99.6 1E-15 3.6E-20 139.6 6.1 80 76-155 100-182 (437)
344 1wf0_A TDP-43, TAR DNA-binding 99.6 2.2E-15 7.6E-20 107.0 6.3 75 76-154 3-77 (88)
345 2cjk_A Nuclear polyadenylated 99.6 2.2E-15 7.6E-20 119.1 6.8 78 76-153 85-164 (167)
346 2bz2_A Negative elongation fac 99.6 1E-14 3.5E-19 110.0 9.8 76 73-154 34-110 (121)
347 2dnl_A Cytoplasmic polyadenyla 99.6 1.6E-14 5.3E-19 107.8 9.6 71 174-248 7-83 (114)
348 2j8a_A Histone-lysine N-methyl 99.6 1.2E-14 4.2E-19 109.0 8.7 77 176-253 3-96 (136)
349 2yh0_A Splicing factor U2AF 65 99.6 1.3E-14 4.3E-19 117.9 9.6 80 75-154 111-193 (198)
350 3u1l_A PRE-mRNA-splicing facto 99.6 9.7E-15 3.3E-19 122.3 9.0 81 173-258 132-234 (240)
351 2adc_A Polypyrimidine tract-bi 99.6 2.6E-14 8.9E-19 119.4 11.5 78 172-253 31-110 (229)
352 2pe8_A Splicing factor 45; RRM 99.5 2.6E-14 8.9E-19 105.1 9.8 79 75-153 5-92 (105)
353 3pgw_A U1-A; protein-RNA compl 99.5 2.6E-14 9E-19 122.7 11.0 80 173-254 7-91 (282)
354 1fje_B Nucleolin RBD12, protei 99.5 1.6E-14 5.6E-19 115.1 8.4 80 71-153 92-172 (175)
355 2dit_A HIV TAT specific factor 99.5 7.8E-14 2.7E-18 103.6 11.5 81 172-255 12-104 (112)
356 2j8a_A Histone-lysine N-methyl 99.5 1.4E-14 4.7E-19 108.8 6.8 76 78-153 2-94 (136)
357 3u1l_A PRE-mRNA-splicing facto 99.5 2.9E-14 9.8E-19 119.5 9.0 77 75-155 131-229 (240)
358 1qm9_A Polypyrimidine tract-bi 99.5 2.4E-14 8.3E-19 116.5 8.1 75 175-253 3-79 (198)
359 2dit_A HIV TAT specific factor 99.5 1.2E-13 3.9E-18 102.7 10.1 79 74-154 11-101 (112)
360 1jmt_A Splicing factor U2AF 35 99.5 2.1E-14 7.1E-19 105.4 5.3 70 180-250 20-103 (104)
361 3v4m_A Splicing factor U2AF 65 99.5 1E-13 3.4E-18 101.9 8.7 78 174-252 4-96 (105)
362 2d9o_A DNAJ (HSP40) homolog, s 99.5 2.8E-13 9.7E-18 98.5 9.9 65 185-255 27-92 (100)
363 3sde_A Paraspeckle component 1 99.5 3.7E-13 1.3E-17 114.6 11.3 76 173-253 20-96 (261)
364 1jmt_A Splicing factor U2AF 35 99.4 5.7E-14 1.9E-18 103.1 3.9 70 83-152 20-103 (104)
365 3v4m_A Splicing factor U2AF 65 99.4 3.6E-13 1.2E-17 98.9 7.8 78 76-153 3-95 (105)
366 3ue2_A Poly(U)-binding-splicin 99.4 6.4E-13 2.2E-17 99.6 8.6 79 173-252 18-108 (118)
367 3ue2_A Poly(U)-binding-splicin 99.4 9.2E-13 3.1E-17 98.7 7.7 77 77-153 19-107 (118)
368 3tht_A Alkylated DNA repair pr 99.4 1.7E-12 5.9E-17 114.2 9.3 74 173-251 16-97 (345)
369 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.8E-11 6.2E-16 88.9 12.3 63 88-155 27-90 (100)
370 3s6e_A RNA-binding protein 39; 99.3 5.3E-12 1.8E-16 93.9 9.2 76 174-252 6-92 (114)
371 3tht_A Alkylated DNA repair pr 99.3 3E-12 1E-16 112.7 8.3 75 75-153 15-97 (345)
372 3s6e_A RNA-binding protein 39; 99.3 1.4E-11 4.8E-16 91.6 8.5 76 76-153 5-91 (114)
373 2dnr_A Synaptojanin-1; RRM dom 99.3 3.4E-11 1.2E-15 84.7 9.4 77 173-256 5-89 (91)
374 1owx_A Lupus LA protein, SS-B, 99.1 3.6E-10 1.2E-14 84.4 9.4 74 172-250 15-93 (121)
375 1owx_A Lupus LA protein, SS-B, 99.0 1.1E-09 3.7E-14 81.8 9.4 72 77-152 17-93 (121)
376 1ufw_A Synaptojanin 2; RNP dom 99.0 6E-10 2.1E-14 78.7 6.7 74 172-252 12-94 (95)
377 2dnr_A Synaptojanin-1; RRM dom 99.0 9.1E-10 3.1E-14 77.4 7.4 71 78-154 7-85 (91)
378 3dxb_A Thioredoxin N-terminall 98.9 5.4E-09 1.9E-13 86.5 7.9 63 188-251 142-211 (222)
379 1ufw_A Synaptojanin 2; RNP dom 98.8 4.7E-09 1.6E-13 74.2 5.0 70 77-152 14-92 (95)
380 3dxb_A Thioredoxin N-terminall 98.8 1.2E-08 4E-13 84.4 7.6 64 90-153 141-211 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.5 7E-07 2.4E-11 64.4 9.2 70 175-249 21-96 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.5 5.3E-07 1.8E-11 65.0 8.2 73 75-151 18-96 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.3 1E-05 3.4E-10 57.8 10.9 90 75-188 5-99 (104)
384 1wey_A Calcipressin 1; structu 98.0 3.1E-05 1.1E-09 55.5 7.9 75 175-254 5-85 (104)
385 2dhx_A Poly (ADP-ribose) polym 97.9 0.00015 5.1E-09 51.7 10.9 75 174-254 7-85 (104)
386 1whv_A Poly(A)-specific ribonu 97.9 5.5E-05 1.9E-09 53.4 8.0 58 74-138 12-70 (100)
387 1wey_A Calcipressin 1; structu 97.6 0.0004 1.4E-08 49.7 9.0 73 77-153 4-82 (104)
388 1wwh_A Nucleoporin 35, nucleop 97.6 0.00031 1E-08 51.7 7.9 73 75-152 21-94 (119)
389 1uw4_A UPF3X; nonsense mediate 97.5 0.00036 1.2E-08 49.0 7.0 65 79-143 2-71 (91)
390 3ctr_A Poly(A)-specific ribonu 97.4 0.00013 4.5E-09 51.6 4.2 53 79-138 7-60 (101)
391 1wwh_A Nucleoporin 35, nucleop 97.3 0.0018 6.3E-08 47.5 9.7 71 174-250 23-94 (119)
392 1uw4_A UPF3X; nonsense mediate 97.3 0.0016 5.4E-08 45.7 8.1 76 176-252 2-87 (91)
393 3pq1_A Poly(A) RNA polymerase; 96.9 0.00062 2.1E-08 61.9 4.0 65 71-139 46-110 (464)
394 3p3d_A Nucleoporin 53; structu 96.8 0.0011 3.8E-08 49.4 4.4 74 78-152 7-96 (132)
395 1whv_A Poly(A)-specific ribonu 96.5 0.0082 2.8E-07 42.3 6.7 52 176-235 17-69 (100)
396 2l08_A Regulator of nonsense t 96.4 0.0021 7.2E-08 45.4 3.3 65 78-142 9-78 (97)
397 3ctr_A Poly(A)-specific ribonu 96.0 0.011 3.7E-07 41.8 5.2 53 176-236 7-60 (101)
398 3pq1_A Poly(A) RNA polymerase; 95.9 0.005 1.7E-07 55.9 4.0 57 174-235 52-108 (464)
399 3p3d_A Nucleoporin 53; structu 95.9 0.012 4.1E-07 43.8 5.0 74 176-251 8-97 (132)
400 2l08_A Regulator of nonsense t 95.8 0.011 3.9E-07 41.7 4.4 75 175-250 9-93 (97)
401 3d45_A Poly(A)-specific ribonu 89.9 0.98 3.3E-05 41.5 8.1 54 78-138 440-494 (507)
402 3d45_A Poly(A)-specific ribonu 80.3 5.8 0.0002 36.3 8.2 53 176-236 441-494 (507)
403 2g0c_A ATP-dependent RNA helic 60.3 31 0.0011 22.2 6.3 59 186-251 12-75 (76)
404 4e8u_A Putative uncharacterize 59.0 17 0.00057 28.1 5.2 58 78-136 12-81 (172)
405 4e8u_A Putative uncharacterize 42.8 55 0.0019 25.2 5.8 48 176-225 13-71 (172)
406 2cu1_A Mitogen-activated prote 41.2 50 0.0017 23.0 4.8 68 180-253 21-88 (103)
407 3j21_T 50S ribosomal protein L 40.0 84 0.0029 21.1 6.0 55 179-234 26-81 (86)
408 2v94_A RPS24, 30S ribosomal pr 39.0 65 0.0022 22.7 5.3 46 185-231 37-88 (107)
409 2cqk_A C-MPL binding protein; 38.9 10 0.00036 26.6 1.1 33 12-47 43-75 (101)
410 1ywx_A 30S ribosomal protein S 38.0 53 0.0018 22.9 4.7 46 185-231 28-79 (102)
411 3u5c_Y RP50, 40S ribosomal pro 35.2 93 0.0032 22.9 5.8 45 186-231 34-84 (135)
412 1vq8_S 50S ribosomal protein L 31.8 92 0.0031 20.9 4.9 56 178-234 24-80 (85)
413 2xzm_P RPS24E; ribosome, trans 31.3 1E+02 0.0034 23.1 5.5 46 185-231 31-82 (149)
414 3u5e_X 60S ribosomal protein L 29.9 1.1E+02 0.0039 22.6 5.5 56 178-234 81-137 (142)
415 2zkr_s 60S ribosomal protein L 27.1 1.2E+02 0.004 23.0 5.2 56 178-234 95-151 (156)
416 4a17_R RPL23A, 60S ribosomal p 27.0 1.3E+02 0.0043 22.6 5.4 56 178-234 89-145 (150)
417 1s29_A LA protein; winged heli 24.3 16 0.00054 25.1 -0.0 32 12-46 41-72 (92)
418 3iz5_X 60S ribosomal protein L 23.8 1.4E+02 0.0049 22.4 5.2 56 178-234 91-147 (152)
419 3r8s_T 50S ribosomal protein L 21.9 68 0.0023 21.9 2.9 35 178-212 29-64 (93)
420 3fut_A Dimethyladenosine trans 21.8 76 0.0026 26.1 3.7 30 78-108 110-139 (271)
421 1vf5_H Protein PET N; photosyn 21.4 62 0.0021 17.0 1.9 25 7-32 1-25 (29)
422 1x8d_A Hypothetical protein YI 20.7 2.1E+02 0.0073 19.7 5.6 34 93-127 27-60 (104)
423 4eyt_A Telomerase associated p 20.3 2.1E+02 0.0072 19.4 8.7 67 76-151 10-78 (129)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=3.3e-36 Score=250.49 Aligned_cols=165 Identities=25% Similarity=0.382 Sum_probs=148.6
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
...++|||+|||+++|+++|+++|++||+|.+|++++|+. .++|||||+|.+.++|.+|++ +++..+.|+.+++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 3467899999999999999999999999999999999874 568999999999999999998 9999999999999997
Q ss_pred CCCCCCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHH
Q 024696 153 KTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAA 232 (264)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~A 232 (264)
.. ..........+|||+|||..+|+++|+++|++ ||.|..|+|+.+.+.++|||||+|.+.++|.+|
T Consensus 93 ~~------------~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~A 159 (213)
T 4f02_A 93 QR------------DPSLRKSGVGNIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDENGSKGYGFVHFETQEAAERA 159 (213)
T ss_dssp CC------------CTHHHHHCTTEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEETTEEEEEEEEEESSHHHHHHH
T ss_pred cc------------cccccccccccceECCcccccHHHHHHHHHhh-cCCeEEEEeeccCCCCceEEEEEeCCHHHHHHH
Confidence 42 12222334579999999999999999999999 699999999999877899999999999999999
Q ss_pred HH-hCCceeCCeeEEEeecCCC
Q 024696 233 LN-CSGAVLGSLPIRVSPSKTP 253 (264)
Q Consensus 233 i~-l~g~~~~g~~l~v~~a~~~ 253 (264)
++ |||..++|++|+|.++++.
T Consensus 160 i~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 160 IEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp HHHHTTCEETTEECEEEECCCH
T ss_pred HHHhCCCEECCEEEEEEEcCCC
Confidence 98 9999999999999999875
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-35 Score=235.07 Aligned_cols=161 Identities=22% Similarity=0.346 Sum_probs=146.5
Q ss_pred cEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecCCCC
Q 024696 79 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAI 156 (264)
Q Consensus 79 ~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~-~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~~~ 156 (264)
++|||+|||+++|+++|+++|+.||+|.++.++.++. .++|||||+|.+.++|.+|++ +++..+.|++|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 6899999999999999999999999999999998874 578999999999999999996 99999999999999985332
Q ss_pred CCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH
Q 024696 157 APVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN 234 (264)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~ 234 (264)
. .......+|||+|||..+++++|+++|++ ||.|..+.+..+. +.++|+|||+|.+.++|.+|++
T Consensus 81 ~------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~ 147 (166)
T 3md3_A 81 Q------------SSSDDTFNLFVGDLNVNVDDETLRNAFKD-FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMD 147 (166)
T ss_dssp C------------CCCTTCEEEEEESCCTTCCHHHHHHHHTT-STTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHH
T ss_pred C------------CCCCCCceEEECCCCCCCCHHHHHHHHhc-cCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHH
Confidence 1 12234589999999999999999999999 6999999999874 6899999999999999999998
Q ss_pred -hCCceeCCeeEEEeecCC
Q 024696 235 -CSGAVLGSLPIRVSPSKT 252 (264)
Q Consensus 235 -l~g~~~~g~~l~v~~a~~ 252 (264)
|||..++|++|+|+||++
T Consensus 148 ~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 148 SMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp HHTTCEETTEECEEEESCC
T ss_pred HhCCCccCCcEEEEEecCC
Confidence 999999999999999874
No 3
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=3e-35 Score=240.48 Aligned_cols=179 Identities=17% Similarity=0.269 Sum_probs=148.0
Q ss_pred ccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEe
Q 024696 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVL 150 (264)
Q Consensus 73 ~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~ 150 (264)
.++...++|||+|||+++|+++|+++|+.||.|.+|.++.++. .++|||||+|.+.++|.+|++.++..+.|+.|.|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPK 87 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeee
Confidence 3456788999999999999999999999999999999999864 46899999999999999999988999999999999
Q ss_pred ecCCCCCCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHH
Q 024696 151 PSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAES 228 (264)
Q Consensus 151 ~s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~ 228 (264)
++....... ........++|||+|||..+++++|+++|++ ||.|..+.+..+. +.++|||||+|.+.++
T Consensus 88 ~~~~~~~~~--------~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~ 158 (196)
T 1l3k_A 88 RAVSREDSQ--------RPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQ-YGKIEVIEIMTDRGSGKKRGFAFVTFDDHDS 158 (196)
T ss_dssp ECCC-------------------CCSEEEEECCTTTCCHHHHHHHHTT-TSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred cccCccccc--------ccccCCCcceEEEeCCCCCCCHHHHHHHHhc-CCCeEEEEEeecCCCCCccceEEEEECCHHH
Confidence 985432211 1112234589999999999999999999999 6999999999885 6799999999999999
Q ss_pred HHHHHHhCCceeCCeeEEEeecCCCCCCCCCC
Q 024696 229 AIAALNCSGAVLGSLPIRVSPSKTPVRPRAPR 260 (264)
Q Consensus 229 A~~Ai~l~g~~~~g~~l~v~~a~~~~~~~~~r 260 (264)
|.+|+..+|..++|+.|.|.|+.+.......+
T Consensus 159 A~~A~~~~~~~~~G~~i~v~~a~~k~~~~~~~ 190 (196)
T 1l3k_A 159 VDKIVIQKYHTVNGHNCEVRKALSKQEMASAS 190 (196)
T ss_dssp HHHHHHCSCCEETTEECEEEECC---------
T ss_pred HHHHHHhCCcEECCEEEEEEecCChhHhcccc
Confidence 99999878999999999999999886655433
No 4
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=2.5e-34 Score=238.42 Aligned_cols=181 Identities=25% Similarity=0.326 Sum_probs=152.2
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEe
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 150 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~ 150 (264)
.....++|||+|||+++|+++|+++|+.||.|.+|.++.+.. .++|||||+|.+.++|.+|++ +++..+.|++|.|.
T Consensus 24 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~ 103 (216)
T 2qfj_A 24 ALAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVG 103 (216)
T ss_dssp HHHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEE
T ss_pred ccCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEe
Confidence 344578999999999999999999999999999999998863 578999999999999999998 99999999999998
Q ss_pred ecCCCCCCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHH
Q 024696 151 PSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAES 228 (264)
Q Consensus 151 ~s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~ 228 (264)
++........ ............++|||+|||..+++++|+++|++ ||.|..+.+..+. ++++|||||+|.+.++
T Consensus 104 ~~~~~~~~~~---~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~ 179 (216)
T 2qfj_A 104 RPSNIGQAQP---IIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEA-FGKIKSATLARDPTTGKHKGYGFIEYEKAQS 179 (216)
T ss_dssp CCSCCGGGHH---HHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTT-SSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred cCCCccccch---hhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhc-cCCeeEEEEEecCCCCCcCceEEEEecCHHH
Confidence 8642210000 00000112345689999999999999999999999 6999999999875 6789999999999999
Q ss_pred HHHHHH-hCCceeCCeeEEEeecCCCCCCCC
Q 024696 229 AIAALN-CSGAVLGSLPIRVSPSKTPVRPRA 258 (264)
Q Consensus 229 A~~Ai~-l~g~~~~g~~l~v~~a~~~~~~~~ 258 (264)
|.+|++ |||..++|+.|+|.|+++++.+.+
T Consensus 180 A~~A~~~l~g~~~~g~~i~V~~a~~~~~~~~ 210 (216)
T 2qfj_A 180 SQDAVSSMNLFDLGGQYLRVGKAVTPPMPLL 210 (216)
T ss_dssp HHHHHHHHTTCBCSSSBCEEEECSSCSSTTS
T ss_pred HHHHHHHccCCEeCCcEEEEEEecCCCCCCC
Confidence 999999 999999999999999998865553
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=1e-33 Score=225.60 Aligned_cols=159 Identities=23% Similarity=0.402 Sum_probs=144.4
Q ss_pred CCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecC
Q 024696 77 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 153 (264)
Q Consensus 77 ~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~ 153 (264)
+.++|||+|||+++++++|+++|+.||+|.++.++.++. .++|||||+|.+.++|.+|++ +++..+.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 468999999999999999999999999999999998764 468999999999999999998 99999999999999985
Q ss_pred CCCCCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHH
Q 024696 154 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIA 231 (264)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~ 231 (264)
.... ....++|||+|||..+++++|+++|++ ||.|..+.+.+++ +.++|+|||+|.+.++|.+
T Consensus 82 ~~~~--------------~~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~ 146 (168)
T 1b7f_A 82 PGGE--------------SIKDTNLYVTNLPRTITDDQLDTIFGK-YGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQE 146 (168)
T ss_dssp CCSS--------------TTTTCEEEEESCCTTCCHHHHHHHHTS-SSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred CCcc--------------cCCCCCEEEeCCCCCCCHHHHHHhhhc-CCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHH
Confidence 3211 124589999999999999999999999 6999999999875 6789999999999999999
Q ss_pred HHH-hCCceeCC--eeEEEeec
Q 024696 232 ALN-CSGAVLGS--LPIRVSPS 250 (264)
Q Consensus 232 Ai~-l~g~~~~g--~~l~v~~a 250 (264)
|++ |||..+.| ++|+|+||
T Consensus 147 A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 147 AISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHHhcCCEecCCCeEEEEEeC
Confidence 999 99999977 99999986
No 6
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1.3e-33 Score=224.48 Aligned_cols=158 Identities=23% Similarity=0.405 Sum_probs=143.1
Q ss_pred CcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecCC
Q 024696 78 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 154 (264)
Q Consensus 78 ~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~ 154 (264)
+++|||+|||+++++++|+++|+.||+|.++.++.++. .++|||||+|.+.++|.+|++ +++..+.|++|.|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57999999999999999999999999999999998863 568999999999999999998 999999999999999752
Q ss_pred CCCCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHH
Q 024696 155 AIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAA 232 (264)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~A 232 (264)
.. ......+|||+|||..+++++|+++|++ ||.|..+.+..+. +.++|+|||+|.+.++|.+|
T Consensus 82 ~~--------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A 146 (167)
T 1fxl_A 82 SS--------------ASIRDANLYVSGLPKTMTQKELEQLFSQ-YGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 146 (167)
T ss_dssp CC--------------GGGTTCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHH
T ss_pred Cc--------------ccCCCCcEEECCCCCcCCHHHHHHHHHh-cCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHH
Confidence 21 1234588999999999999999999999 6999999999875 67899999999999999999
Q ss_pred HH-hCCceeCCee--EEEeec
Q 024696 233 LN-CSGAVLGSLP--IRVSPS 250 (264)
Q Consensus 233 i~-l~g~~~~g~~--l~v~~a 250 (264)
++ |||..+.|+. |+|+||
T Consensus 147 ~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 147 IKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HHHHTTCCCTTCSSCCEEEEC
T ss_pred HHHhcCCccCCCccceEEEeC
Confidence 99 9999999965 999886
No 7
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=1.3e-33 Score=226.45 Aligned_cols=161 Identities=24% Similarity=0.340 Sum_probs=142.2
Q ss_pred CCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCC----CceEEEEEecCHHHHHHHHH-hcCCCCC---CcceE
Q 024696 77 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS----VLRFAFVEFTDEEGARAALS-LAGTMLG---FYPVR 148 (264)
Q Consensus 77 ~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~----s~G~afV~F~~~~~a~~Ai~-l~~~~~~---g~~l~ 148 (264)
+.++|||+|||+++|+++|+++|++||+|.++.++.+..+ ++|||||+|.+.++|.+|++ +++..+. ++++.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 5789999999999999999999999999999999988753 68999999999999999998 9998765 67888
Q ss_pred EeecCCCCCCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCceeEEEEEECCHH
Q 024696 149 VLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAE 227 (264)
Q Consensus 149 V~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-~~~~g~afV~f~~~~ 227 (264)
+.++..... .....++|||+|||..+|+++|+++|++ ||.|.++.+.+++ +.++|||||+|.+.+
T Consensus 82 ~~~~~~~~~-------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~v~~~~~~~g~~~g~afV~f~~~~ 147 (175)
T 3nmr_A 82 MKPADSEKN-------------NAVEDRKLFIGMISKKCTENDIRVMFSS-FGQIEECRILRGPDGLSRGCAFVTFTTRA 147 (175)
T ss_dssp EEECGGGCC-------------SCGGGSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTSCEEEEEEEEESSHH
T ss_pred Ecccccccc-------------ccCCCCeEEEcCCCCcCCHHHHHHHHHh-CCCEEEEEEEECCCCCEEEEEEEEECCHH
Confidence 888643211 1224589999999999999999999999 6999999999886 788999999999999
Q ss_pred HHHHHHH-hCCceeC---CeeEEEeecC
Q 024696 228 SAIAALN-CSGAVLG---SLPIRVSPSK 251 (264)
Q Consensus 228 ~A~~Ai~-l~g~~~~---g~~l~v~~a~ 251 (264)
+|.+|++ |||..+. |++|+|+||.
T Consensus 148 ~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 148 MAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 9999998 9998776 4999999984
No 8
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=2.4e-34 Score=229.22 Aligned_cols=161 Identities=17% Similarity=0.258 Sum_probs=144.7
Q ss_pred CCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEeecCC
Q 024696 77 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 154 (264)
Q Consensus 77 ~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~s~~ 154 (264)
++++|||+|||+++|+++|+++|+.||+|.++.++.++. .++|||||+|.+.++|.+|++ ++..+.|+.|.|.++..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeEcccccccc
Confidence 468999999999999999999999999999999998863 578999999999999999998 45678999999988631
Q ss_pred CCCCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHH
Q 024696 155 AIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAA 232 (264)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~A 232 (264)
. ......++|||+|||..+++++|+++|++ ||.|..+.+..++ +.++|||||+|.+.++|.+|
T Consensus 81 ~--------------~~~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A 145 (167)
T 2cjk_A 81 R--------------DEQDKTGKIFVGGIGPDVRPKEFEEFFSQ-WGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRV 145 (167)
T ss_dssp H--------------HHHHHCEEEEEEEECTTCCHHHHHHHHHT-TSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHH
T ss_pred h--------------hhccCCCeEEECCCCCCCCHHHHHHHHHh-CccEEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 1 11234589999999999999999999999 6999999999875 78999999999999999999
Q ss_pred HHhCCceeCCeeEEEeecCCC
Q 024696 233 LNCSGAVLGSLPIRVSPSKTP 253 (264)
Q Consensus 233 i~l~g~~~~g~~l~v~~a~~~ 253 (264)
++++|..++|++|+|.||+|+
T Consensus 146 ~~~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 146 CQNKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp HHCSEECSSSSCEEEEECCCC
T ss_pred HhCCCEEeCCeEEEEeecCCC
Confidence 999999999999999999886
No 9
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=5.7e-33 Score=229.71 Aligned_cols=170 Identities=15% Similarity=0.143 Sum_probs=141.3
Q ss_pred CCcEEEEcCCC-CcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecCC
Q 024696 77 IRRTVYVSDID-QQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 154 (264)
Q Consensus 77 ~~~~v~V~nLp-~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~ 154 (264)
+.++|||+||| +++|+++|+++|+.||.|.+|++++++ +|||||+|.+.++|.+|++ |||..+.|++|+|.+++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~---~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK---PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS---TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC---CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 46799999999 899999999999999999999998864 4999999999999999998 999999999999999864
Q ss_pred CCCC-CCC----CCCC-----------C-Cc------cccccCCceEEEeCCCCCCCHHHHHHHhhhcCCce--EEEEEe
Q 024696 155 AIAP-VNP----TFLP-----------R-SE------DEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEV--QRLRLL 209 (264)
Q Consensus 155 ~~~~-~~~----~~~~-----------~-~~------~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V--~~v~i~ 209 (264)
.... ..+ ...+ + .. ....+++++|||+|||+.+|+++|+++|++ ||.| ..+++.
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~-~G~v~~~~v~~~ 158 (205)
T 3tyt_A 80 PAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDE-LGVKRPTSVKVF 158 (205)
T ss_dssp SCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHH-HTCCCCSEEEEC
T ss_pred CccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHh-cCCcceEEEEEE
Confidence 3321 000 0000 0 00 001235679999999999999999999999 6999 899999
Q ss_pred ccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCe----eEEEeec
Q 024696 210 GDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSL----PIRVSPS 250 (264)
Q Consensus 210 ~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~----~l~v~~a 250 (264)
.+.+..+|+|||+|.+.++|.+|+. |||..+.|. ++.|+++
T Consensus 159 ~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 159 SGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp SCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred cCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 8877677999999999999999998 999999887 5666654
No 10
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=8.7e-34 Score=228.01 Aligned_cols=165 Identities=17% Similarity=0.254 Sum_probs=141.4
Q ss_pred ccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecC-CCCCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEee
Q 024696 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD-PNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLP 151 (264)
Q Consensus 73 ~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~-~~~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~ 151 (264)
..+...++|||+|||+++|+++|+++|..||.+..+.+... .+.++|||||+|.+.++|.+|+++++..+.|++|.|.+
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEEC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEec
Confidence 35667899999999999999999999999998765222221 23578999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHH
Q 024696 152 SKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIA 231 (264)
Q Consensus 152 s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~ 231 (264)
+..... ......++|||+|||..+++++|+++|++ ||.|..+ ...+.++|||||+|.+.++|.+
T Consensus 88 ~~~~~~------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~-~g~v~~~---~~~~~~~g~afV~f~~~~~A~~ 151 (175)
T 1fje_B 88 PKGRDS------------KKVRAARTLLAKNLSFNITEDELKEVFED-ALEIRLV---SQDGKSKGIAYIEFKSEADAEK 151 (175)
T ss_dssp CCCSSC------------STTGGGGEEEEESCCSSCCHHHHHHHCTT-CSEEEEE---CSSSSCCSEEEEECSSHHHHHH
T ss_pred CCCccc------------cccccCCEEEEeCCCCCCCHHHHHHHHHh-cCeEEEe---cCCCCCceEEEEEECCHHHHHH
Confidence 853311 11234589999999999999999999999 6998877 4447899999999999999999
Q ss_pred HHH-hCCceeCCeeEEEeecCCC
Q 024696 232 ALN-CSGAVLGSLPIRVSPSKTP 253 (264)
Q Consensus 232 Ai~-l~g~~~~g~~l~v~~a~~~ 253 (264)
|++ |||..++|++|+|+|++|+
T Consensus 152 A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 152 NLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HHHHHTEEEETTEEEEEEECSSC
T ss_pred HHHHhCCCEECCeEEEEEecCCC
Confidence 999 9999999999999999876
No 11
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=1.7e-32 Score=224.47 Aligned_cols=174 Identities=20% Similarity=0.303 Sum_probs=145.5
Q ss_pred CCcEEEEcCCCCcCCHHHHHHHhhcC----C-------CeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCc
Q 024696 77 IRRTVYVSDIDQQVTEEQLATLFLTC----G-------QVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFY 145 (264)
Q Consensus 77 ~~~~v~V~nLp~~~te~~L~~~F~~~----G-------~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~ 145 (264)
.+++|||+|||+++|+++|+++|+.| | .|.++.+..+ +|||||+|.+.++|.+|+++++..+.|+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~----~g~afV~F~~~~~A~~Al~l~g~~~~g~ 78 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAMAFDGIIFQGQ 78 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETT----TTEEEEEESCSHHHHHHGGGTTEEETTE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCC----CCEEEEEeCCHHHHHHHHHhcCCEEcCc
Confidence 57899999999999999999999999 5 6676666443 4899999999999999999999999999
Q ss_pred ceEEeecCCCCCCCCCCCCC------CCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCcee
Q 024696 146 PVRVLPSKTAIAPVNPTFLP------RSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTR 217 (264)
Q Consensus 146 ~l~V~~s~~~~~~~~~~~~~------~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g 217 (264)
+|.|.++............+ ..........++|||+|||..+++++|+++|++ ||.|..+.+..++ +.++|
T Consensus 79 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~v~~~~~~~~~~~~~~~g 157 (198)
T 2yh0_A 79 SLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTS-FGPLKAFNLVKDSATGLSKG 157 (198)
T ss_dssp EEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHT-BSCEEEEEEEECTTTCSEEE
T ss_pred eEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHH-cCCccEEEEeecCCCCCcce
Confidence 99999986542221110000 011111346689999999999999999999999 6999999999884 67899
Q ss_pred EEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecCCCCC
Q 024696 218 IAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTPVR 255 (264)
Q Consensus 218 ~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~~~~~ 255 (264)
||||+|.+.++|.+|++ |||..++|+.|+|.|++|+.+
T Consensus 158 ~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 158 YAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp EEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99999999999999999 999999999999999998754
No 12
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=1.6e-32 Score=219.63 Aligned_cols=156 Identities=21% Similarity=0.340 Sum_probs=140.3
Q ss_pred CCcEEEEcCCCCcCCHHHHHHHhhcC----C-------CeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCc
Q 024696 77 IRRTVYVSDIDQQVTEEQLATLFLTC----G-------QVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFY 145 (264)
Q Consensus 77 ~~~~v~V~nLp~~~te~~L~~~F~~~----G-------~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~ 145 (264)
..++|||+|||+++|+++|+++|++| | .|.++.+..+ +|||||+|.+.++|.+|+++++..+.|+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~----~g~afV~f~~~~~A~~A~~~~~~~~~g~ 78 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAMAFDGIIFQGQ 78 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT----TTEEEEEESSHHHHHHHGGGTTCEETTE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC----CCEEEEEeCCHHHHHHHHHhCCcEecCc
Confidence 46899999999999999999999999 7 7888877655 4899999999999999999999999999
Q ss_pred ceEEeecCCCCCCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEE
Q 024696 146 PVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEF 223 (264)
Q Consensus 146 ~l~V~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f 223 (264)
+|.|.++..... ....++|||+|||..+++++|+++|++ ||.|..+.+..++ +.++|+|||+|
T Consensus 79 ~i~v~~~~~~~~--------------~~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~g~~~g~afV~f 143 (172)
T 2g4b_A 79 SLKIRRPHDYQP--------------LPGAHKLFIGGLPNYLNDDQVKELLTS-FGPLKAFNLVKDSATGLSKGYAFCEY 143 (172)
T ss_dssp ECEEECCSSCCC--------------CTTTTCEEEECCCTTCCHHHHHHHHHT-TSCEEEEEEEECTTTCSEEEEEEEEE
T ss_pred eeeecCCcccCC--------------CCCCCEEEEEcCCCcCCHHHHHHHHHh-cCCceEEEEEecCCCCCcceEEEEEe
Confidence 999998743211 123589999999999999999999999 6999999999984 77999999999
Q ss_pred CCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 024696 224 AMAESAIAALN-CSGAVLGSLPIRVSPSK 251 (264)
Q Consensus 224 ~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~ 251 (264)
.+.++|.+|++ |||..++|++|+|+||.
T Consensus 144 ~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 144 VDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp SSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 99999999998 99999999999999973
No 13
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=6.6e-32 Score=226.89 Aligned_cols=174 Identities=28% Similarity=0.331 Sum_probs=146.3
Q ss_pred cCCCCcEEEEcCCCC-cCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEee
Q 024696 74 DEVIRRTVYVSDIDQ-QVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 151 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~-~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~ 151 (264)
.....++|||+|||+ ++++++|+++|+.||.|.+|.++.++ +|||||+|.+.++|.+|++ +++..+.|++|.|.+
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 345678999999999 99999999999999999999999887 4899999999999999998 999999999999999
Q ss_pred cCCCCCCCCCCC------------------C-CCC--ccccccCCceEEEeCCCCCCCHHHHHHHhhhcCC-ceEEEEEe
Q 024696 152 SKTAIAPVNPTF------------------L-PRS--EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLL 209 (264)
Q Consensus 152 s~~~~~~~~~~~------------------~-~~~--~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G-~V~~v~i~ 209 (264)
+........... . +.. .....+++++|||+|||..+++++|+++|++ || .|..+.+.
T Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~~i~~v~i~ 185 (229)
T 2adc_A 107 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSS-NGGVVKGFKFF 185 (229)
T ss_dssp CSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHT-TSCCEEEEEEC
T ss_pred ecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHH-cCCCeeEEEEE
Confidence 864321110000 0 000 0011245689999999999999999999999 69 99999996
Q ss_pred ccCCCceeEEEEEECCHHHHHHHHH-hCCceeC-CeeEEEeecCCCC
Q 024696 210 GDYQHSTRIAFVEFAMAESAIAALN-CSGAVLG-SLPIRVSPSKTPV 254 (264)
Q Consensus 210 ~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~-g~~l~v~~a~~~~ 254 (264)
.+ .+|+|||+|.+.++|.+|++ |||..++ |++|+|.|++|+.
T Consensus 186 ~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~i 229 (229)
T 2adc_A 186 QK---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKSTI 229 (229)
T ss_dssp SS---STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSCC
T ss_pred EC---CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCCC
Confidence 53 25799999999999999999 9999999 9999999999863
No 14
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=4e-32 Score=222.74 Aligned_cols=171 Identities=27% Similarity=0.324 Sum_probs=144.6
Q ss_pred CCcEEEEcCCCC-cCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecCC
Q 024696 77 IRRTVYVSDIDQ-QVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 154 (264)
Q Consensus 77 ~~~~v~V~nLp~-~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~ 154 (264)
+.++|||+|||+ ++++++|+++|+.||.|.+|.++.++ +|||||+|.+.++|.+|++ +++..+.|++|.|.++..
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 467999999999 99999999999999999999999887 4899999999999999998 999999999999999864
Q ss_pred CCCCCCCCCC---------------------CCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccC
Q 024696 155 AIAPVNPTFL---------------------PRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDY 212 (264)
Q Consensus 155 ~~~~~~~~~~---------------------~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G-~V~~v~i~~~~ 212 (264)
.......... ........+++++|||+|||..+++++|+++|++ || .|..+.+..+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~~v~~v~i~~~~ 157 (198)
T 1qm9_A 79 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSS-NGGVVKGFKFFQKD 157 (198)
T ss_dssp CSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHH-TTSCCCEEEESSTT
T ss_pred CCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHH-cCCCceEEEEEeCC
Confidence 3211100000 0000011245789999999999999999999999 69 99999997643
Q ss_pred CCceeEEEEEECCHHHHHHHHH-hCCceeC-CeeEEEeecCCCC
Q 024696 213 QHSTRIAFVEFAMAESAIAALN-CSGAVLG-SLPIRVSPSKTPV 254 (264)
Q Consensus 213 ~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~-g~~l~v~~a~~~~ 254 (264)
+|+|||+|.+.++|.+|++ |||..++ |++|+|.|++|+.
T Consensus 158 ---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~i 198 (198)
T 1qm9_A 158 ---RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKSTI 198 (198)
T ss_dssp ---SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCCC
T ss_pred ---CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecccC
Confidence 5799999999999999999 9999999 9999999999863
No 15
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=1.6e-31 Score=230.87 Aligned_cols=173 Identities=23% Similarity=0.350 Sum_probs=144.4
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHH----HHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceE
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLA----TLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVR 148 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~----~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~ 148 (264)
+....++|||+|||+++|+++|+ ++|+.||.|.+|.+.+ .+.++|||||+|.+.++|.+|++ +||..+.|++|+
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 83 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 83 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC-CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEE
Confidence 45668899999999999999976 8999999999999887 34578999999999999999997 999999999999
Q ss_pred EeecCCCCCCC---CCCCC-------------------------------------------------------------
Q 024696 149 VLPSKTAIAPV---NPTFL------------------------------------------------------------- 164 (264)
Q Consensus 149 V~~s~~~~~~~---~~~~~------------------------------------------------------------- 164 (264)
|.+++...... .....
T Consensus 84 v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 163 (282)
T 3pgw_A 84 IQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPY 163 (282)
T ss_pred EEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCC
Confidence 99985432100 00000
Q ss_pred -------------C--------------------CCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEecc
Q 024696 165 -------------P--------------------RSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD 211 (264)
Q Consensus 165 -------------~--------------------~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~ 211 (264)
+ .........+++|||+|||..+++++|+++|++ ||.|.+|++..+
T Consensus 164 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~-~G~i~~v~~~~~ 242 (282)
T 3pgw_A 164 MPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQ-FPGFKEVRLVPG 242 (282)
T ss_pred CCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHh-cCCeEEEEEecC
Confidence 0 000012335688999999999999999999999 699999999876
Q ss_pred CCCceeEEEEEECCHHHHHHHHH-hCCceeC-CeeEEEeecC
Q 024696 212 YQHSTRIAFVEFAMAESAIAALN-CSGAVLG-SLPIRVSPSK 251 (264)
Q Consensus 212 ~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~-g~~l~v~~a~ 251 (264)
. +|||||+|.+.++|.+|++ |||..+. |+.|+|+|++
T Consensus 243 ~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 243 R---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred C---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 4 4799999999999999999 9999999 9999999986
No 16
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=3.1e-32 Score=236.41 Aligned_cols=163 Identities=20% Similarity=0.292 Sum_probs=141.5
Q ss_pred cccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEee
Q 024696 72 QQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLP 151 (264)
Q Consensus 72 ~~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~ 151 (264)
...+...++|||+|||+++|+++|+++|+.||+|.+|.++.+..+++|||||+|.+.++|.+|+++++..+.|++|.|.+
T Consensus 35 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~v~~ 114 (292)
T 2ghp_A 35 LTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTHKVVGQNEIIVSH 114 (292)
T ss_dssp -------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCEETTEECEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcEeCCcEEEEEE
Confidence 34466789999999999999999999999999999999999887778999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccC-CCceeEEEEEECCHHHH
Q 024696 152 SKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDY-QHSTRIAFVEFAMAESA 229 (264)
Q Consensus 152 s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G-~V~~v~i~~~~-~~~~g~afV~f~~~~~A 229 (264)
+ ..++|||+|||..+++++|+++|++ || .|..|.++.+. +.++|||||+|.+.++|
T Consensus 115 ~---------------------~~~~l~v~nlp~~~t~~~l~~~f~~-~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a 172 (292)
T 2ghp_A 115 L---------------------TECTLWMTNFPPSYTQRNIRDLLQD-INVVALSIRLPSLRFNTSRRFAYIDVTSKEDA 172 (292)
T ss_dssp C---------------------CSCEEEEECCCTTCCHHHHHHHHHH-TTCCCCEEECC-------CCEEEEECSSHHHH
T ss_pred C---------------------CCCEEEEECCCCCCCHHHHHHHHHH-hCCCeEEEEEEeCCCCCcceEEEEEECCHHHH
Confidence 6 2489999999999999999999999 69 99999999876 67899999999999999
Q ss_pred HHHHH-hCCceeCCeeEEEeecCCCCCC
Q 024696 230 IAALN-CSGAVLGSLPIRVSPSKTPVRP 256 (264)
Q Consensus 230 ~~Ai~-l~g~~~~g~~l~v~~a~~~~~~ 256 (264)
.+|++ |||..+.|+.|.|.++.|....
T Consensus 173 ~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 200 (292)
T 2ghp_A 173 RYCVEKLNGLKIEGYTLVTKVSNPLEKS 200 (292)
T ss_dssp HHHHHHHTTCEETTEECEEEECCCC---
T ss_pred HHHHHHhCCCEeCCcEEEEEECCCCccc
Confidence 99999 9999999999999999887543
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=4.9e-32 Score=234.28 Aligned_cols=167 Identities=19% Similarity=0.202 Sum_probs=150.0
Q ss_pred CCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecC
Q 024696 77 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 153 (264)
Q Consensus 77 ~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~ 153 (264)
..++|||+|||+++|+++|+++|+.||.|..+.++.+.. .++|||||+|.+.++|.+|++ +++..+.|++|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 457899999999999999999999999999999998763 468999999999999999997 99999999999999985
Q ss_pred CCCCCCCCCCCCCCccccccCCceEEEeCCCCCC-CHHHHHHHhhhcCCceEEEEEeccC-CCceeEEEEEECCHHHHHH
Q 024696 154 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKV-TQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIA 231 (264)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~-te~~L~~~F~~~~G~V~~v~i~~~~-~~~~g~afV~f~~~~~A~~ 231 (264)
..... ......++|||+|||..+ ++++|+++|++ ||.|..+.+..+. |+++|+|||+|.+.++|.+
T Consensus 174 ~~~~~-----------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~ 241 (284)
T 3smz_A 174 AGQLT-----------PALLHSRCLCVDRLPPGFNDVDALCRALSA-VHSPTFCQLACGQDGQLKGFAVLEYETAEMAEE 241 (284)
T ss_dssp GGGCC-----------TTTTSCSEEEEECCCTTCCCHHHHHHHTCS-SSCCSEEEEEECSSCCEEEEEEEECSSHHHHHH
T ss_pred CCCCC-----------cccCCccEEEEecCCcccCCHHHHHHHhhC-CCCeEEEEEEECCCCCcccEEEEEeCCHHHHHH
Confidence 43221 122356899999999995 99999999999 6999999999976 7899999999999999999
Q ss_pred HHH-hCCceeCCeeEEEeecCCCCC
Q 024696 232 ALN-CSGAVLGSLPIRVSPSKTPVR 255 (264)
Q Consensus 232 Ai~-l~g~~~~g~~l~v~~a~~~~~ 255 (264)
|+. |||..++|++|+|.|+++...
T Consensus 242 A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 242 AQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp HHHHHTTCEETTEECEEEECCSSSC
T ss_pred HHHHhCCCccCCeEEEEEEecCCCc
Confidence 999 999999999999999988754
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=3e-31 Score=230.21 Aligned_cols=169 Identities=20% Similarity=0.300 Sum_probs=144.2
Q ss_pred CCcEEEEcCCCCcCCHHHHHHHhhcCC-CeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecC
Q 024696 77 IRRTVYVSDIDQQVTEEQLATLFLTCG-QVVDCRICGDPN-SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 153 (264)
Q Consensus 77 ~~~~v~V~nLp~~~te~~L~~~F~~~G-~I~~v~i~~~~~-~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~ 153 (264)
..++|||+|||+++++++|+++|+.|| .|..+.++.+.. .++|||||+|.+.++|.+|++ ++|..+.|++|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 999999998774 578999999999999999998 99999999999999985
Q ss_pred CCCCCCCCCCCCCCccccccCCceEEEeCCCCC-CCHHHHHHHhhhcCCceEEEEEeccC---CCceeEEEEEECCHHHH
Q 024696 154 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKK-VTQGDIKLFFESVCGEVQRLRLLGDY---QHSTRIAFVEFAMAESA 229 (264)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~-~te~~L~~~F~~~~G~V~~v~i~~~~---~~~~g~afV~f~~~~~A 229 (264)
....... ........++|||+|||.. +++++|+++|++ ||.|..|.++++. +.++|||||+|.+.++|
T Consensus 196 ~~~~~~~-------~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~-~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A 267 (292)
T 2ghp_A 196 PLEKSKR-------TDSATLEGREIMIRNLSTELLDENLLRESFEG-FGSIEKINIPAGQKEHSFNNCCAFMVFENKDSA 267 (292)
T ss_dssp CC----------------CCTTTEEEEEEECTTTCCHHHHHHHHGG-GSCEEEEECCSCCC---CCCEEEEEEESSHHHH
T ss_pred CCccccc-------ccccCCCCceEEEECCCcccCCHHHHHHHHhc-cCCeeEEEEEecCCcCCCCceEEEEEeCCHHHH
Confidence 3321111 0122345689999999999 999999999999 6999999999875 67899999999999999
Q ss_pred HHHHHhCCceeCCeeEEEeecCCC
Q 024696 230 IAALNCSGAVLGSLPIRVSPSKTP 253 (264)
Q Consensus 230 ~~Ai~l~g~~~~g~~l~v~~a~~~ 253 (264)
.+|+.|||..++|++|+|.|++++
T Consensus 268 ~~A~~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 268 ERALQMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp HHHGGGTTEEETTEEEEEEECCCC
T ss_pred HHHHHhcCCEECCcEEEEEEecCC
Confidence 999999999999999999999886
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=1.5e-30 Score=224.91 Aligned_cols=155 Identities=20% Similarity=0.230 Sum_probs=142.0
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecC
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 153 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~ 153 (264)
...+++|||+|||+++|+++|+++|+.|| |.++.+ +.++|||||+|.+.++|.+|++ +++..+.|++|.|.++.
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV----DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE----ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE----ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 44678999999999999999999999999 999888 3345899999999999999998 99999999999999852
Q ss_pred CCCCCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHH
Q 024696 154 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIA 231 (264)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~ 231 (264)
...+|||+|||..+++++|+++|++ ||.|..+.++.+. +.++|||||+|.+.++|.+
T Consensus 94 --------------------~~~~l~v~nlp~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~ 152 (284)
T 3smz_A 94 --------------------TDALLCVANLPPSLTQQQFEELVRP-FGSLERCFLVYSERTGQSKGYGFAEYMKKDSAAR 152 (284)
T ss_dssp --------------------CSCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHH
T ss_pred --------------------CCCEEEEcCCCCcCCHHHHHHHHHh-cCCeeEEEEEeeCCCCccceEEEEEECCHHHHHH
Confidence 2379999999999999999999999 6999999998875 7799999999999999999
Q ss_pred HHH-hCCceeCCeeEEEeecCCCCC
Q 024696 232 ALN-CSGAVLGSLPIRVSPSKTPVR 255 (264)
Q Consensus 232 Ai~-l~g~~~~g~~l~v~~a~~~~~ 255 (264)
|++ ++|..++|++|.|.|+.+...
T Consensus 153 A~~~l~~~~~~g~~i~v~~a~~~~~ 177 (284)
T 3smz_A 153 AKSDLLGKPLGPRTLYVHWTDAGQL 177 (284)
T ss_dssp HHHHHTTCEETTEECEEEECCGGGC
T ss_pred HHHHhCCCEeCCcEEEEEECCCCCC
Confidence 997 999999999999999987754
No 20
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=1.4e-30 Score=222.91 Aligned_cols=156 Identities=27% Similarity=0.378 Sum_probs=141.7
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
.....++|||+|||+++|+++|+++|+.||.|.+|.+.++ +|||||+|.+.++|.+|++ ++|..+.|++|.|.++
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD----RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 4456789999999999999999999999999999999765 3899999999999999998 9999999999999997
Q ss_pred CCCCCCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCceeEEEEEECCHHHHHH
Q 024696 153 KTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIA 231 (264)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-~~~~g~afV~f~~~~~A~~ 231 (264)
. .+.+|||+|||..+|+++|+++|++ ||.|..|.++.+. |.++|||||+|.+.++|.+
T Consensus 94 ~--------------------~~~~l~v~nl~~~~t~~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~ 152 (261)
T 3sde_A 94 T--------------------HGAALTVKNLSPVVSNELLEQAFSQ-FGPVEKAVVVVDDRGRATGKGFVEFAAKPPARK 152 (261)
T ss_dssp C--------------------CSSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEETTSCEEEEEEEEESSHHHHHH
T ss_pred c--------------------cCCcccccCCCCCCCHHHHHHHHHh-cCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHH
Confidence 4 2478999999999999999999999 6999999999886 7899999999999999999
Q ss_pred HHH-h-CCceeC---CeeEEEeecCCCC
Q 024696 232 ALN-C-SGAVLG---SLPIRVSPSKTPV 254 (264)
Q Consensus 232 Ai~-l-~g~~~~---g~~l~v~~a~~~~ 254 (264)
|+. + +|..+. |++|.|.++++..
T Consensus 153 A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 153 ALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp HHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred HHHHhcCCeEEecCCCceEEEeeccccC
Confidence 998 8 555554 9999999998763
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.93 E-value=3.4e-25 Score=175.35 Aligned_cols=146 Identities=16% Similarity=0.121 Sum_probs=110.4
Q ss_pred EEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecCCCCCCCCCCCCCCCccccccCCceEEEeCCCC
Q 024696 107 DCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDK 185 (264)
Q Consensus 107 ~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~ 185 (264)
.+.+..+..+++|||||+|.+.++|++|++ +++....+..+.+............ ..............+|||+|||.
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~v~nl~~ 80 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEG-SHHHHHHMDVEGMTSLKVDNLTY 80 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECC-CCCSSCCCCCCBCCEEEEESCCT
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccccc-ccccccccCCCCCCEEEEeCCCC
Confidence 467777777889999999999999999997 6654332222222221110000000 00011111224568999999999
Q ss_pred CCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecCCCC
Q 024696 186 KVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTPV 254 (264)
Q Consensus 186 ~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~~~~ 254 (264)
.+++++|+++|++ ||.|..|.+..++ ++++|||||+|.+.++|.+|++ |||..++|++|+|.|++++.
T Consensus 81 ~~~~~~l~~~F~~-~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 81 RTSPDTLRRVFEK-YGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp TCCHHHHHHHHHH-HSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred CCCHHHHHHHHHh-cCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 9999999999999 6999999999985 7899999999999999999998 99999999999999999874
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.90 E-value=1e-23 Score=158.36 Aligned_cols=109 Identities=20% Similarity=0.342 Sum_probs=74.2
Q ss_pred CCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecCCC
Q 024696 77 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTA 155 (264)
Q Consensus 77 ~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~~ 155 (264)
...+|||+|||+++|+++|+++|+.||.|.+|+++.+.++++|||||+|.+.++|.+|++ |++..+.|++|.|.++...
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 456899999999999999999999999999999999988889999999999999999997 9999999999999998643
Q ss_pred CCCCCCCCCCCCccccccCCceEEEeCCCCCCCHHH
Q 024696 156 IAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGD 191 (264)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~ 191 (264)
.... ..........++|||+|||+++|++.
T Consensus 84 ~~~~------~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KERE------AELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC----------------------------------
T ss_pred cccc------cccccccCCCCceEeCCCCCCccccc
Confidence 2111 11111223446799999999998864
No 23
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.90 E-value=6.3e-23 Score=161.08 Aligned_cols=140 Identities=14% Similarity=0.129 Sum_probs=113.2
Q ss_pred EecCCCCCceEEEEEecCHHHHHHHHH-h-cCCCCCCcceEEeecCCCCCCCC--CCCCCCCccccccCCceEEEeCCCC
Q 024696 110 ICGDPNSVLRFAFVEFTDEEGARAALS-L-AGTMLGFYPVRVLPSKTAIAPVN--PTFLPRSEDEREMCSRTIYCTNIDK 185 (264)
Q Consensus 110 i~~~~~~s~G~afV~F~~~~~a~~Ai~-l-~~~~~~g~~l~V~~s~~~~~~~~--~~~~~~~~~~~~~~~~~l~V~nL~~ 185 (264)
+..+...-+|+++|+|.+.++|++|++ + |+..+.| ++.+.++........ ...............++|||+|||+
T Consensus 5 l~l~g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~ 83 (150)
T 2i2y_A 5 LILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGN 83 (150)
T ss_dssp EEECCSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCS
T ss_pred eeeccccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCC
Confidence 334444557999999999999999997 8 9999999 999998754211000 0001111222344669999999999
Q ss_pred CCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecCCCC
Q 024696 186 KVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTPV 254 (264)
Q Consensus 186 ~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~~~~ 254 (264)
.+++++|+++|++ ||.|..|+++.+ ++|||||+|.+.++|.+|++ |||..+.|++|+|+|++++.
T Consensus 84 ~~t~~~l~~~F~~-~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 84 NGNKTELERAFGY-YGPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp CCSCHHHHHHHHH-HSCEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred CCCHHHHHHHHHh-hCCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999999999 699999999887 57899999999999999998 99999999999999998873
No 24
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=3.7e-21 Score=140.51 Aligned_cols=79 Identities=29% Similarity=0.442 Sum_probs=74.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
.+++|||+|||.++|+++|+++|++ ||.|.+|++++|+ +.++|||||+|.+.++|.+|++ |||..+.|++|+|+||
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSS-IGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4578999999999999999999999 6999999999876 7899999999999999999998 9999999999999999
Q ss_pred CCC
Q 024696 251 KTP 253 (264)
Q Consensus 251 ~~~ 253 (264)
+|.
T Consensus 97 kPS 99 (99)
T 4fxv_A 97 RPS 99 (99)
T ss_dssp CBC
T ss_pred eCC
Confidence 874
No 25
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.83 E-value=8e-21 Score=146.54 Aligned_cols=123 Identities=17% Similarity=0.176 Sum_probs=78.5
Q ss_pred eEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecCCCCCCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhh
Q 024696 119 RFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFE 197 (264)
Q Consensus 119 G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~ 197 (264)
-++|++|.+...+..|++ +++..-.|+.- ..+. .........++|||+|||..+++++|+++|+
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~--------------~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~ 69 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYG--------------RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFE 69 (135)
T ss_dssp -------------------------------CCSC--------------CSCSSGGGCCCEEEECCCSSCHHHHHHHHHG
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCcC--------------CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 478888899999999998 88766554321 1111 0011123458999999999999999999999
Q ss_pred hcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecCCCCCCC
Q 024696 198 SVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTPVRPR 257 (264)
Q Consensus 198 ~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~~~~~~~ 257 (264)
+ ||.|..|.+..++ ++++|||||+|.+.++|.+|++ |||..+.|++|+|+|+++...++
T Consensus 70 ~-~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~~ 131 (135)
T 2lea_A 70 K-YGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPD 131 (135)
T ss_dssp G-GSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCCT
T ss_pred h-cCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCCc
Confidence 9 6999999999875 6899999999999999999998 99999999999999999875443
No 26
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=6.7e-20 Score=137.41 Aligned_cols=81 Identities=23% Similarity=0.331 Sum_probs=75.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKT 252 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~~ 252 (264)
+..+|||+|||+++++++|+++|++ ||.|.+|+|+.+.+.++|||||+|.+.++|++|++ |||..+.|++|+|.++++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~-~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~ 82 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSA-FGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 82 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhc-cCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 3578999999999999999999999 69999999999987789999999999999999998 999999999999999987
Q ss_pred CCC
Q 024696 253 PVR 255 (264)
Q Consensus 253 ~~~ 255 (264)
...
T Consensus 83 ~~~ 85 (115)
T 4f25_A 83 RKE 85 (115)
T ss_dssp CCC
T ss_pred ccc
Confidence 643
No 27
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-19 Score=131.65 Aligned_cols=89 Identities=22% Similarity=0.365 Sum_probs=81.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
..++|||+|||..+++++|+++|++ ||.|..|.+..++ +.++|||||+|.+.++|.+|++ |||..+.|++|+|.++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSA-YGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4589999999999999999999999 6999999999876 6789999999999999999997 9999999999999999
Q ss_pred CCCCCCCCCCCCC
Q 024696 251 KTPVRPRAPRPPL 263 (264)
Q Consensus 251 ~~~~~~~~~r~~~ 263 (264)
+++..+.++.++|
T Consensus 86 ~~~~~~~~~~~~s 98 (99)
T 1whw_A 86 TIKKEASQSGPSS 98 (99)
T ss_dssp CCCSTTCCCCCCC
T ss_pred CCCcccccCCCCC
Confidence 9997766555543
No 28
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.82 E-value=2e-20 Score=134.51 Aligned_cols=80 Identities=20% Similarity=0.267 Sum_probs=73.3
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-h-CCceeCCeeEEEee
Q 024696 175 SRTIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-C-SGAVLGSLPIRVSP 249 (264)
Q Consensus 175 ~~~l~V~nL~~~~te~~L~~~F~~~~G-~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l-~g~~~~g~~l~v~~ 249 (264)
+++|||+|||+++|+++|+++|++ || .|.+|++++|+ +.++|||||+|.+.++|.+|++ + ++..++|++|+|+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~-~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQS-HGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHH-HTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHH-hCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEE
Confidence 378999999999999999999999 59 89999999876 6899999999999999999998 6 56789999999999
Q ss_pred cCCCCC
Q 024696 250 SKTPVR 255 (264)
Q Consensus 250 a~~~~~ 255 (264)
|+|+++
T Consensus 80 a~~~~~ 85 (91)
T 2lxi_A 80 SDPKPK 85 (91)
T ss_dssp CCSCCC
T ss_pred cCCCCC
Confidence 988754
No 29
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.8e-19 Score=132.22 Aligned_cols=85 Identities=18% Similarity=0.344 Sum_probs=78.5
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 172 ~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
....++|||+|||..+++++|+++|++ ||.|..|.+..+.+.++|||||+|.+.++|.+|++ |||..+.|++|+|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSP-FGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTT-TSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 345699999999999999999999999 69999999999877899999999999999999999 9999999999999999
Q ss_pred CCCCCCC
Q 024696 251 KTPVRPR 257 (264)
Q Consensus 251 ~~~~~~~ 257 (264)
+++..++
T Consensus 91 ~~~~~~~ 97 (103)
T 2d9p_A 91 QRKEERQ 97 (103)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 9985443
No 30
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.81 E-value=2.3e-19 Score=134.33 Aligned_cols=90 Identities=18% Similarity=0.261 Sum_probs=79.9
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEe
Q 024696 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 248 (264)
Q Consensus 172 ~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~ 248 (264)
....++|||+|||.++++++|+++|++ ||.|..|.+..++ ++++|||||+|.+.++|.+|++ |||..+.|++|+|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMP-FGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGG-GSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345689999999999999999999999 6999999999875 6799999999999999999998 99999999999999
Q ss_pred ecCCCCCCCCCCCCC
Q 024696 249 PSKTPVRPRAPRPPL 263 (264)
Q Consensus 249 ~a~~~~~~~~~r~~~ 263 (264)
|++++.. ++++++|
T Consensus 101 ~a~~~~~-~~~~~~s 114 (115)
T 2cpz_A 101 LKRSKND-SKSGPSS 114 (115)
T ss_dssp CCCCSCC-CCCCCCC
T ss_pred EcCCCCc-CCCCCCC
Confidence 9998854 3344443
No 31
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.81 E-value=8.9e-20 Score=145.35 Aligned_cols=134 Identities=19% Similarity=0.163 Sum_probs=76.2
Q ss_pred EEecCHHHHHHHHH-hcCCCCC--CcceEEeecCCCCCCCCCCC---C---CCCccccccCCceEEEeCCCCCCCHHHHH
Q 024696 123 VEFTDEEGARAALS-LAGTMLG--FYPVRVLPSKTAIAPVNPTF---L---PRSEDEREMCSRTIYCTNIDKKVTQGDIK 193 (264)
Q Consensus 123 V~F~~~~~a~~Ai~-l~~~~~~--g~~l~V~~s~~~~~~~~~~~---~---~~~~~~~~~~~~~l~V~nL~~~~te~~L~ 193 (264)
.+|.+.++|..|+. +++.... |+.....++........... . ..........+++|||+|||..+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 67999999999997 8876654 66666555322110000000 0 01111223456899999999999999999
Q ss_pred HHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecCCCCCCC
Q 024696 194 LFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTPVRPR 257 (264)
Q Consensus 194 ~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~~~~~~~ 257 (264)
++|++ ||.|..|.+..+. +.++|||||+|.+.++|.+|++ |||..+.|++|.|.|+++...++
T Consensus 91 ~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 91 EKFCD-YGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp HHHGG-GSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred HHhhc-CCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 99999 6999999999874 6789999999999999999998 99999999999999998775544
No 32
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.6e-19 Score=130.02 Aligned_cols=85 Identities=19% Similarity=0.291 Sum_probs=78.2
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 172 ~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
....++|||+|||..+++++|+++|++ ||.|..|.+..+.+.++|||||+|.+.++|.+|++ |||..+.|+.|+|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQ-FGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGG-TSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 345699999999999999999999999 69999999999886689999999999999999998 9999999999999999
Q ss_pred CCCCCCC
Q 024696 251 KTPVRPR 257 (264)
Q Consensus 251 ~~~~~~~ 257 (264)
+++..+.
T Consensus 91 ~~~~~~~ 97 (103)
T 2cq3_A 91 TARVMTN 97 (103)
T ss_dssp CSSCCCC
T ss_pred ccCCCCC
Confidence 9885433
No 33
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.7e-19 Score=129.97 Aligned_cols=87 Identities=22% Similarity=0.344 Sum_probs=77.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCC-----CceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEE
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQ-----HSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRV 247 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~-----~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v 247 (264)
..++|||+|||..+++++|+++|++ ||.|..|.+..++. .++|||||+|.+.++|.+|++ |||..+.|++|+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSK-VGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4589999999999999999999999 69999999998653 689999999999999999999 9999999999999
Q ss_pred eecCCCCCCCCCCCC
Q 024696 248 SPSKTPVRPRAPRPP 262 (264)
Q Consensus 248 ~~a~~~~~~~~~r~~ 262 (264)
+++++...++ +.++
T Consensus 83 ~~a~~~~~~~-~~~~ 96 (98)
T 2cpf_A 83 RISERATKPA-SGPS 96 (98)
T ss_dssp ECSSCSSCCC-CCCC
T ss_pred EEccCCCCCC-CCCC
Confidence 9999885444 3443
No 34
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.6e-19 Score=130.56 Aligned_cols=84 Identities=26% Similarity=0.341 Sum_probs=77.7
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 249 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~ 249 (264)
...++|||+|||..+++++|+++|++ ||.|..|.++.++ +.++|||||+|.+.++|.+|++ |||..+.|+.|+|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRP-FGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTT-TCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 45699999999999999999999999 6999999999875 6899999999999999999999 999999999999999
Q ss_pred cCCCCCCC
Q 024696 250 SKTPVRPR 257 (264)
Q Consensus 250 a~~~~~~~ 257 (264)
++++..+.
T Consensus 92 a~~~~~~~ 99 (103)
T 2cq0_A 92 AKPSTNSG 99 (103)
T ss_dssp SSCCCCSC
T ss_pred CCCCCCCC
Confidence 99885443
No 35
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=6.2e-19 Score=129.28 Aligned_cols=85 Identities=25% Similarity=0.354 Sum_probs=78.3
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 251 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~ 251 (264)
...++|||+|||..+++++|+++|++ ||.|..|.+..+.+.++|||||+|.+.++|.+|++ |||..+.|++|+|.|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQ-IGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHH-HSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHh-cCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 35699999999999999999999999 69999999999887689999999999999999999 99999999999999999
Q ss_pred CCCCCCC
Q 024696 252 TPVRPRA 258 (264)
Q Consensus 252 ~~~~~~~ 258 (264)
++...+.
T Consensus 92 ~~~~~~~ 98 (103)
T 2cqi_A 92 TPSSQKS 98 (103)
T ss_dssp CTTCCCC
T ss_pred CCccccc
Confidence 8765443
No 36
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.80 E-value=4.4e-19 Score=130.50 Aligned_cols=85 Identities=20% Similarity=0.259 Sum_probs=77.9
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCceeEEEEEECCHHHHHHHHH-hCCceeCC---eeEE
Q 024696 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGS---LPIR 246 (264)
Q Consensus 172 ~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g---~~l~ 246 (264)
....++|||+|||..+++++|+++|++ ||.|..|.+..++ ++++|||||+|.+.++|.+|++ |||..+.| ++|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQP-FGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 345699999999999999999999999 6999999999986 7789999999999999999998 99999988 9999
Q ss_pred EeecCCCCCCC
Q 024696 247 VSPSKTPVRPR 257 (264)
Q Consensus 247 v~~a~~~~~~~ 257 (264)
|.|+++...++
T Consensus 91 V~~a~~~~~~~ 101 (105)
T 2dnh_A 91 VKFADTDKESG 101 (105)
T ss_dssp EEESCSSCCCS
T ss_pred EEECccCcccC
Confidence 99999985443
No 37
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.80 E-value=1.5e-19 Score=131.96 Aligned_cols=77 Identities=23% Similarity=0.402 Sum_probs=72.1
Q ss_pred CCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecC
Q 024696 77 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 153 (264)
Q Consensus 77 ~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~ 153 (264)
...+|||+|||+++|+++|+++|++||+|.++++++|+. .++|||||+|.+.++|.+|++ |||..+.|++|+|.+++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 456899999999999999999999999999999999874 568999999999999999998 99999999999999985
No 38
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=5.3e-19 Score=127.62 Aligned_cols=84 Identities=24% Similarity=0.380 Sum_probs=77.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
++++|||+|||..+++++|+++|++ ||.|..+.+..++ ++++|||||+|.+.++|.+|++ |||..+.|++|+|+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEP-FGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4589999999999999999999999 6999999999975 6799999999999999999999 9999999999999999
Q ss_pred CCCCCCCC
Q 024696 251 KTPVRPRA 258 (264)
Q Consensus 251 ~~~~~~~~ 258 (264)
+++..+..
T Consensus 83 ~~~~~~~~ 90 (95)
T 2dnz_A 83 TERLDGGS 90 (95)
T ss_dssp SCCCCCCC
T ss_pred ccccCCCC
Confidence 98865443
No 39
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=5.5e-19 Score=128.64 Aligned_cols=83 Identities=17% Similarity=0.241 Sum_probs=77.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecC
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSK 251 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~a~ 251 (264)
..++|||+|||..+++++|+++|++ ||.|..|.++.++ +.++|||||+|.+.++|.+|+++|+..+.|+.|+|.+++
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~ 87 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKK-FGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAE 87 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSS-SSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 4589999999999999999999999 6999999999875 678999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 024696 252 TPVRPR 257 (264)
Q Consensus 252 ~~~~~~ 257 (264)
++..++
T Consensus 88 ~~~~~~ 93 (99)
T 2dgs_A 88 PRDSKS 93 (99)
T ss_dssp CCCCCC
T ss_pred CCcccC
Confidence 885544
No 40
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.6e-19 Score=131.03 Aligned_cols=85 Identities=26% Similarity=0.387 Sum_probs=77.9
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 249 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~ 249 (264)
...++|||+|||..+++++|+++|++ ||.|..|.++.++ ++++|||||+|.+.++|.+|++ |||..+.|++|+|.|
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTT-TSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhc-cCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 35689999999999999999999999 6999999999875 6789999999999999999998 999999999999999
Q ss_pred cCCCCCCCC
Q 024696 250 SKTPVRPRA 258 (264)
Q Consensus 250 a~~~~~~~~ 258 (264)
++++..+++
T Consensus 89 a~~~~~~~~ 97 (102)
T 2cqb_A 89 AKPMRIKES 97 (102)
T ss_dssp CCCCCCCCC
T ss_pred CCCCCCCCC
Confidence 999855443
No 41
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.80 E-value=8.4e-19 Score=131.18 Aligned_cols=85 Identities=22% Similarity=0.295 Sum_probs=78.2
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 249 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~ 249 (264)
...++|||+|||..+++++|+++|++ ||.|..|.+..++ +.++|||||+|.+.++|++|++ |||..+.|+.|+|.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAP-FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45689999999999999999999999 6999999999874 7799999999999999999998 999999999999999
Q ss_pred cCCCCCCCC
Q 024696 250 SKTPVRPRA 258 (264)
Q Consensus 250 a~~~~~~~~ 258 (264)
+++...++.
T Consensus 92 a~~~~~~~~ 100 (115)
T 2dgo_A 92 ATRKPPAPK 100 (115)
T ss_dssp SSCCCCCSC
T ss_pred ccCCCCCCc
Confidence 988866544
No 42
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.80 E-value=4.4e-20 Score=132.26 Aligned_cols=81 Identities=17% Similarity=0.203 Sum_probs=68.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCC--ceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 176 RTIYCTNIDKKVTQGDIKLFFESVCG--EVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 176 ~~l~V~nL~~~~te~~L~~~F~~~~G--~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
.+|||+|||.++++++|+++|++ || .|.+++++.++ |+++|||||+|.+.++|.+|++ |||..+.|+.|+|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~-~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHS-LGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHT-TTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHH-hCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 57999999999999999999999 69 99999999975 7899999999999999999998 9999999999999999
Q ss_pred CCCCCCC
Q 024696 251 KTPVRPR 257 (264)
Q Consensus 251 ~~~~~~~ 257 (264)
+|++.+.
T Consensus 81 ~~~~~~~ 87 (90)
T 3p5t_L 81 NKLEHHH 87 (90)
T ss_dssp -------
T ss_pred CCCcccc
Confidence 9886544
No 43
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.9e-19 Score=129.24 Aligned_cols=83 Identities=24% Similarity=0.309 Sum_probs=76.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEE-EEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRL-RLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 249 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v-~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~ 249 (264)
++++|||+|||..+++++|+++|++ ||.|..+ .++.++ +.++|||||+|.+.++|.+|++ |||..+.|++|+|+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSA-FGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHT-TSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4689999999999999999999999 6999999 999874 6789999999999999999999 999999999999999
Q ss_pred cCCCCCCC
Q 024696 250 SKTPVRPR 257 (264)
Q Consensus 250 a~~~~~~~ 257 (264)
++++..++
T Consensus 83 a~~~~~~~ 90 (96)
T 1x5t_A 83 AFKKDSKG 90 (96)
T ss_dssp SCCCCCCC
T ss_pred ecccCCCC
Confidence 99885443
No 44
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.80 E-value=1.4e-19 Score=132.28 Aligned_cols=99 Identities=23% Similarity=0.278 Sum_probs=82.3
Q ss_pred cEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecCCCCC
Q 024696 79 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIA 157 (264)
Q Consensus 79 ~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~~~~ 157 (264)
++|||+|||+++|+++|+++|++||+|.++.+..+ ++|||||+|.+.++|.+|++ |++..+.|++|+|.+++....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 47999999999999999999999999999999988 56999999999999999998 999999999999999875442
Q ss_pred CCCCCCCCCCccccccCCceEEEeCCC
Q 024696 158 PVNPTFLPRSEDEREMCSRTIYCTNID 184 (264)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~l~V~nL~ 184 (264)
..... ....+.....++|||||+
T Consensus 78 ~~~~~----~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 78 RSRFD----RPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SSCCC----SCCCSCCCCSCCCSCCCC
T ss_pred cccCC----CCCccccCCCceecCCCC
Confidence 21111 111222346889999997
No 45
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.80 E-value=4.4e-19 Score=131.94 Aligned_cols=79 Identities=14% Similarity=0.104 Sum_probs=74.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
+.++|||+|||+.+++++|+++|++ ||.|.+|.|+.|+ ++++|||||+|.+.++|.+|++ |||..+.|+.|+|.++
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~-~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRK-YGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHh-cCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4589999999999999999999999 6999999999986 6899999999999999999998 9999999999999998
Q ss_pred CCC
Q 024696 251 KTP 253 (264)
Q Consensus 251 ~~~ 253 (264)
+..
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 655
No 46
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.8e-19 Score=131.13 Aligned_cols=88 Identities=22% Similarity=0.263 Sum_probs=78.6
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 249 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~ 249 (264)
...++|||+|||..+++++|+++|++ ||.|..|.+..++ ++++|||||+|.+.++|.+|++ |||..+.|+.|+|.+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEK-YGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34599999999999999999999999 6999999999875 6789999999999999999999 999999999999999
Q ss_pred cCCCCCCCCCCCC
Q 024696 250 SKTPVRPRAPRPP 262 (264)
Q Consensus 250 a~~~~~~~~~r~~ 262 (264)
+++..+ +.++++
T Consensus 90 a~~~~~-~~~~~~ 101 (103)
T 2dnm_A 90 ARYGRR-DLSGPS 101 (103)
T ss_dssp CSSCCS-CCCCCS
T ss_pred CCcCCC-CCCCCC
Confidence 998743 334443
No 47
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.80 E-value=4.8e-19 Score=125.71 Aligned_cols=79 Identities=22% Similarity=0.315 Sum_probs=72.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
..++|||+|||..+++++|+++|++ ||.|..+.+..++ +.++|||||+|.+.++|.+|++ |||..+.|+.|+|+|+
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAP-FGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 4589999999999999999999999 6999999999874 6799999999999999999999 9999999999999999
Q ss_pred CCC
Q 024696 251 KTP 253 (264)
Q Consensus 251 ~~~ 253 (264)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 876
No 48
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.3e-18 Score=126.87 Aligned_cols=82 Identities=18% Similarity=0.306 Sum_probs=76.5
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
...++|||+|||..+++++|+++|++ ||.|..|.+..++ ++++|||||+|.+.++|.+|++ |||..+.|++|+|.++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKA-HGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 35689999999999999999999999 6999999999987 7889999999999999999998 9999999999999999
Q ss_pred CCCCC
Q 024696 251 KTPVR 255 (264)
Q Consensus 251 ~~~~~ 255 (264)
+|+..
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 88743
No 49
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.1e-19 Score=127.83 Aligned_cols=82 Identities=23% Similarity=0.282 Sum_probs=75.5
Q ss_pred CCceEEEeCCCCCCCHHHHH----HHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEe
Q 024696 174 CSRTIYCTNIDKKVTQGDIK----LFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 248 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~----~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~ 248 (264)
..++|||+|||..+++++|+ ++|++ ||.|.+|.++.++.. +|||||+|.+.++|.+|++ |||..+.|++|+|+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~-~G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFAR-HGKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHH-HSCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccc-cCcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45899999999999999999 99999 699999999998755 8999999999999999999 99999999999999
Q ss_pred ecCCCCCCC
Q 024696 249 PSKTPVRPR 257 (264)
Q Consensus 249 ~a~~~~~~~ 257 (264)
+++++..+.
T Consensus 86 ~a~~~~~~~ 94 (96)
T 2dgx_A 86 LATGASGPS 94 (96)
T ss_dssp ECCCSSCCC
T ss_pred EcCCCCCCC
Confidence 998875443
No 50
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.79 E-value=5e-19 Score=126.99 Aligned_cols=82 Identities=23% Similarity=0.250 Sum_probs=77.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKT 252 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~~ 252 (264)
..++|||+|||..+++++|+++|++ ||.|..+.+.++.++++|||||+|.+.++|.+|++ |||..+.|+.|+|+++++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNE-CGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHT-TSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 4589999999999999999999999 69999999998878899999999999999999999 999999999999999998
Q ss_pred CCCC
Q 024696 253 PVRP 256 (264)
Q Consensus 253 ~~~~ 256 (264)
+..+
T Consensus 86 ~~~~ 89 (92)
T 2dgv_A 86 ASGP 89 (92)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 8544
No 51
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.79 E-value=9.7e-19 Score=123.00 Aligned_cols=78 Identities=17% Similarity=0.267 Sum_probs=73.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 024696 176 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKT 252 (264)
Q Consensus 176 ~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~~ 252 (264)
.+|||+|||..+++++|+++|++ ||.|..+.+..++ +.++|||||+|.+.++|.+|++ |||..+.|++|+|+|+++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKD-FPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTT-STTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 68999999999999999999999 6999999999875 6789999999999999999999 999999999999999988
Q ss_pred CC
Q 024696 253 PV 254 (264)
Q Consensus 253 ~~ 254 (264)
..
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 52
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.6e-19 Score=129.25 Aligned_cols=85 Identities=18% Similarity=0.309 Sum_probs=77.8
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 249 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~ 249 (264)
...++|||+|||..+++++|+++|++ ||.|..|.+..++ +.++|||||+|.+.++|.+|++ |||..+.|++|+|.+
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSK-YGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHH-HSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34589999999999999999999999 6999999999875 6789999999999999999998 999999999999999
Q ss_pred cCCCCCCCC
Q 024696 250 SKTPVRPRA 258 (264)
Q Consensus 250 a~~~~~~~~ 258 (264)
++++...+.
T Consensus 89 a~~~~~~~~ 97 (102)
T 1x5s_A 89 AGKSSDNRS 97 (102)
T ss_dssp EECCCCCCC
T ss_pred CCCCCCCCC
Confidence 998865543
No 53
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.79 E-value=6.8e-19 Score=132.15 Aligned_cols=83 Identities=20% Similarity=0.346 Sum_probs=77.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 251 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~ 251 (264)
..++|||+|||.++++++|+++|++ ||.|..|.+..+. ++++|||||+|.+.++|.+|++ |||..+.|+.|+|.+++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGK-HGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHT-SSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 4589999999999999999999999 6999999999986 7899999999999999999998 99999999999999998
Q ss_pred CCCCCC
Q 024696 252 TPVRPR 257 (264)
Q Consensus 252 ~~~~~~ 257 (264)
++..+.
T Consensus 85 ~~~~~~ 90 (116)
T 2fy1_A 85 KPSFQS 90 (116)
T ss_dssp CSSCSS
T ss_pred CCCCCC
Confidence 876543
No 54
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.79 E-value=1.6e-19 Score=130.67 Aligned_cols=79 Identities=24% Similarity=0.263 Sum_probs=71.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCc--eEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCc----eeCCee
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGE--VQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGA----VLGSLP 244 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~--V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~----~~~g~~ 244 (264)
.-.||||+|||+.+|+++|+++|++ ||. |.+|++++|+ ++++|||||+|.+.++|.+|++ |||. .+.|++
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~-~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSP-YASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTT-TCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHh-hCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 3489999999999999999999999 695 6799999986 6899999999999999999998 9886 589999
Q ss_pred EEEeecCCC
Q 024696 245 IRVSPSKTP 253 (264)
Q Consensus 245 l~v~~a~~~ 253 (264)
|.|+||+.+
T Consensus 87 i~V~~Akss 95 (95)
T 2lkz_A 87 IGVDFAKSA 95 (95)
T ss_dssp EEEEECCCC
T ss_pred EEEEEccCC
Confidence 999999864
No 55
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.6e-18 Score=127.90 Aligned_cols=85 Identities=21% Similarity=0.287 Sum_probs=77.6
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEecc---CCCceeEEEEEECCHHHHHHHHH-h-CCceeCCeeEE
Q 024696 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD---YQHSTRIAFVEFAMAESAIAALN-C-SGAVLGSLPIR 246 (264)
Q Consensus 172 ~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~---~~~~~g~afV~f~~~~~A~~Ai~-l-~g~~~~g~~l~ 246 (264)
....++|||+|||..+++++|+++|++ ||.|..|.+..+ .+.++|||||+|.+.++|.+|++ | ||..+.|+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFST-FGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHc-cCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 345699999999999999999999999 699999999988 37789999999999999999998 9 99999999999
Q ss_pred EeecCCCCCCC
Q 024696 247 VSPSKTPVRPR 257 (264)
Q Consensus 247 v~~a~~~~~~~ 257 (264)
|.|+++.....
T Consensus 91 v~~a~~~~~~~ 101 (107)
T 2cph_A 91 LEWADSEVTVQ 101 (107)
T ss_dssp EEECCCCCCCC
T ss_pred EEeCCCCCCCC
Confidence 99999885433
No 56
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3e-18 Score=128.41 Aligned_cols=88 Identities=17% Similarity=0.283 Sum_probs=79.2
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEe
Q 024696 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 248 (264)
Q Consensus 172 ~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~ 248 (264)
....++|||+|||..+++++|+++|++ ||.|..|.+..++ ++++|||||+|.+.++|++|++ +++ .+.|+.|+|.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEG-FGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHT-TSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-CCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 345699999999999999999999999 6999999999975 6799999999999999999999 888 8999999999
Q ss_pred ecCCCCCCCCCCC
Q 024696 249 PSKTPVRPRAPRP 261 (264)
Q Consensus 249 ~a~~~~~~~~~r~ 261 (264)
++++...++..++
T Consensus 92 ~a~~~~~~~~~~~ 104 (116)
T 2cqd_A 92 LAYLGAKPRSLQT 104 (116)
T ss_dssp ESTTTCCCCCCCC
T ss_pred EcccCCCccccCC
Confidence 9988766665443
No 57
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-18 Score=128.39 Aligned_cols=84 Identities=20% Similarity=0.303 Sum_probs=77.1
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hC------CceeCCe
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CS------GAVLGSL 243 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~------g~~~~g~ 243 (264)
...++|||+|||..+++++|+++|++ ||.|..|.+..++ +.++|||||+|.+.++|.+|++ +| |..+.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQ-FGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 35689999999999999999999999 6999999999886 6789999999999999999998 99 9999999
Q ss_pred eEEEeecCCCCCCC
Q 024696 244 PIRVSPSKTPVRPR 257 (264)
Q Consensus 244 ~l~v~~a~~~~~~~ 257 (264)
.|+|.|+++.....
T Consensus 92 ~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 92 QLKVDLAVTRDEAA 105 (111)
T ss_dssp EEEEECCCCCCCCC
T ss_pred EEEEEECCCCccCC
Confidence 99999999885443
No 58
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1e-18 Score=128.78 Aligned_cols=82 Identities=23% Similarity=0.259 Sum_probs=76.0
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 249 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~ 249 (264)
..+++|||+|||..+++++|+++|++ ||.|..|.+..+. +.++|||||+|.+.++|.+|++ |||..+.|+.|+|+|
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAE-YGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhc-cCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 45689999999999999999999999 6999999999875 6789999999999999999998 999999999999999
Q ss_pred cCCCCC
Q 024696 250 SKTPVR 255 (264)
Q Consensus 250 a~~~~~ 255 (264)
+++...
T Consensus 100 a~~~~~ 105 (106)
T 1p27_B 100 CFVRGP 105 (106)
T ss_dssp SEESSC
T ss_pred ecCCCC
Confidence 988743
No 59
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.78 E-value=1.4e-18 Score=125.84 Aligned_cols=81 Identities=28% Similarity=0.322 Sum_probs=75.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 024696 175 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 251 (264)
Q Consensus 175 ~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~ 251 (264)
+++|||+|||..+++++|+++|++ ||.|..+.+..++ +.++|||||+|.+.++|.+|++ |||..++|+.|+|.+++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSN-VGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 589999999999999999999999 6999999999885 6789999999999999999998 99999999999999999
Q ss_pred CCCCC
Q 024696 252 TPVRP 256 (264)
Q Consensus 252 ~~~~~ 256 (264)
++...
T Consensus 81 ~~~~~ 85 (96)
T 2x1f_A 81 NSDIS 85 (96)
T ss_dssp CSSGG
T ss_pred CCCCC
Confidence 87543
No 60
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-18 Score=127.44 Aligned_cols=84 Identities=25% Similarity=0.271 Sum_probs=77.6
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 249 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~ 249 (264)
...++|||+|||..+++++|+++|++ ||.|..|.+..++ +.++|||||+|.+.++|.+|++ |||..+.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 91 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQ-AGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 91 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 35699999999999999999999999 6999999999975 6799999999999999999999 999999999999999
Q ss_pred cCCCCCCC
Q 024696 250 SKTPVRPR 257 (264)
Q Consensus 250 a~~~~~~~ 257 (264)
++++...+
T Consensus 92 a~~~~~~~ 99 (105)
T 1x5u_A 92 ASAHNKNL 99 (105)
T ss_dssp TTTTSCCC
T ss_pred CCCCCcCC
Confidence 99885543
No 61
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=3.4e-18 Score=127.58 Aligned_cols=81 Identities=27% Similarity=0.374 Sum_probs=75.1
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
...++|||+|||..+++++|+++|++ ||.|..|.+..++ ++++|||||+|.+.++|.+|++ |||..+.|+.|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSM-AGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 34689999999999999999999999 6999999999876 7789999999999999999999 9999999999999999
Q ss_pred CCCC
Q 024696 251 KTPV 254 (264)
Q Consensus 251 ~~~~ 254 (264)
++..
T Consensus 92 ~~~~ 95 (114)
T 2do0_A 92 ERAL 95 (114)
T ss_dssp SCCC
T ss_pred ccCC
Confidence 7553
No 62
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=129.72 Aligned_cols=88 Identities=23% Similarity=0.335 Sum_probs=78.4
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceE--------EEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeC
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQ--------RLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLG 241 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~--------~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~ 241 (264)
...++|||+|||..+++++|+++|++ ||.|. .|.+..++ ++++|||||+|.+.++|.+|++ |||..+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQ-CGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTT-TSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHh-cCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45699999999999999999999999 69999 69999874 6889999999999999999998 9999999
Q ss_pred CeeEEEeecCCCCCCCCCCCC
Q 024696 242 SLPIRVSPSKTPVRPRAPRPP 262 (264)
Q Consensus 242 g~~l~v~~a~~~~~~~~~r~~ 262 (264)
|+.|+|.++++... +.+.++
T Consensus 92 g~~l~V~~a~~~~~-~~~~~~ 111 (113)
T 2cpe_A 92 GSKLKVSLARKKPP-MNSGPS 111 (113)
T ss_dssp TEECEEECSSCCCC-STTCCC
T ss_pred CCEEEEEECCCCCC-CCCCCC
Confidence 99999999999854 334443
No 63
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-18 Score=126.84 Aligned_cols=82 Identities=30% Similarity=0.436 Sum_probs=76.9
Q ss_pred ccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEee
Q 024696 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 151 (264)
Q Consensus 73 ~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~ 151 (264)
.++...++|||+|||+++++++|+++|+.||.|.+|.++.+..+++|||||+|.+.++|.+|++ |++..+.|++|+|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 3456789999999999999999999999999999999999987789999999999999999998 999999999999999
Q ss_pred cCC
Q 024696 152 SKT 154 (264)
Q Consensus 152 s~~ 154 (264)
++.
T Consensus 90 a~~ 92 (103)
T 2cqi_A 90 ATT 92 (103)
T ss_dssp CCC
T ss_pred CCC
Confidence 864
No 64
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.78 E-value=1.2e-18 Score=129.38 Aligned_cols=84 Identities=23% Similarity=0.265 Sum_probs=77.0
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEe
Q 024696 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 248 (264)
Q Consensus 172 ~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~ 248 (264)
...+++|||+|||..+++++|+++|++ ||.|..|.+..+. +.++|||||+|.+.++|.+|++ |||..+.|++|+|.
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCD-YGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGG-GSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 345689999999999999999999999 6999999999875 6789999999999999999998 99999999999999
Q ss_pred ecCCCCCC
Q 024696 249 PSKTPVRP 256 (264)
Q Consensus 249 ~a~~~~~~ 256 (264)
|+++...+
T Consensus 102 ~a~~~~~~ 109 (110)
T 1oo0_B 102 WCFVKGPK 109 (110)
T ss_dssp ESEESSCC
T ss_pred EcccCCCC
Confidence 99887543
No 65
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.9e-18 Score=125.68 Aligned_cols=83 Identities=22% Similarity=0.318 Sum_probs=77.1
Q ss_pred ccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEee
Q 024696 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 151 (264)
Q Consensus 73 ~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~ 151 (264)
..+...++|||+|||+++++++|+++|+.||.|.+|.++.+.+.++|||||+|.+.++|.+|++ |++..+.|++|.|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456779999999999999999999999999999999999987788999999999999999998 999999999999999
Q ss_pred cCCC
Q 024696 152 SKTA 155 (264)
Q Consensus 152 s~~~ 155 (264)
+...
T Consensus 90 a~~~ 93 (103)
T 2cq3_A 90 ATAR 93 (103)
T ss_dssp CCSS
T ss_pred cccC
Confidence 8644
No 66
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=3.1e-18 Score=125.57 Aligned_cols=83 Identities=28% Similarity=0.424 Sum_probs=76.2
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEeec
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPS 250 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~a 250 (264)
...++|||+|||..+++++|+++|++ || |..|.++.++ ++++|||||+|.+.++|.+|++|||..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKD-LS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTT-SC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHh-CC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEe
Confidence 34589999999999999999999999 57 9999999886 67999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 024696 251 KTPVRPR 257 (264)
Q Consensus 251 ~~~~~~~ 257 (264)
++....+
T Consensus 91 ~~~~~~~ 97 (103)
T 2dng_A 91 EGRKQDK 97 (103)
T ss_dssp CCCCCCC
T ss_pred cCCCCCC
Confidence 9885544
No 67
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.78 E-value=1.4e-18 Score=128.07 Aligned_cols=83 Identities=24% Similarity=0.369 Sum_probs=76.3
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCcee---CCeeEE
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVL---GSLPIR 246 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~---~g~~l~ 246 (264)
...++|||+|||..+++++|+++|++ ||.|..|.++.++ ++++|||||+|.+.++|.+|++ |||..+ .|++|+
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEE-FGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHH-HSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 45689999999999999999999999 6999999999975 6789999999999999999998 999988 899999
Q ss_pred EeecCCCCCC
Q 024696 247 VSPSKTPVRP 256 (264)
Q Consensus 247 v~~a~~~~~~ 256 (264)
|.++++....
T Consensus 90 v~~a~~~~~~ 99 (106)
T 2dgp_A 90 VKPADSESRG 99 (106)
T ss_dssp EEECCCCSCC
T ss_pred EEECCccccc
Confidence 9999988543
No 68
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.78 E-value=1.2e-18 Score=123.16 Aligned_cols=77 Identities=29% Similarity=0.454 Sum_probs=72.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
..++|||+|||..+++++|+++|++ ||.|..+.++.++ +.++|||||+|.+.++|.+|++ |||..+.|++|+|+||
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGG-GSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhc-cCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 4599999999999999999999999 6999999998874 6689999999999999999998 9999999999999998
Q ss_pred C
Q 024696 251 K 251 (264)
Q Consensus 251 ~ 251 (264)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 6
No 69
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.6e-18 Score=123.93 Aligned_cols=79 Identities=23% Similarity=0.275 Sum_probs=74.2
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 249 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~ 249 (264)
...++|||+|||..+++++|+++|++ ||.|..|.+..++ +.++|||||+|.+.++|.+|++ |||..+.|++|+|+|
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSK-YGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHT-TSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHh-cCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 45689999999999999999999999 6999999999876 6789999999999999999999 999999999999999
Q ss_pred cCC
Q 024696 250 SKT 252 (264)
Q Consensus 250 a~~ 252 (264)
+++
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 876
No 70
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=128.07 Aligned_cols=80 Identities=26% Similarity=0.304 Sum_probs=72.0
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hC--CceeCCeeEEEee
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CS--GAVLGSLPIRVSP 249 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~--g~~~~g~~l~v~~ 249 (264)
...++|||+|||+++|+++|+++|++ ||.|.+|.++++ +|||||+|++.++|.+|++ ++ +..+.|++|+|.|
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~-fG~V~~v~i~~~----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLP-FGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHH-HCCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 45699999999999999999999999 699999999886 4799999999999999998 75 4799999999999
Q ss_pred cCCCCCCC
Q 024696 250 SKTPVRPR 257 (264)
Q Consensus 250 a~~~~~~~ 257 (264)
|++....+
T Consensus 89 A~~~~~~~ 96 (105)
T 1sjq_A 89 SNHKELKT 96 (105)
T ss_dssp CSSSSCCC
T ss_pred cCCCCCCc
Confidence 98875443
No 71
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.2e-19 Score=130.20 Aligned_cols=81 Identities=19% Similarity=0.289 Sum_probs=76.4
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 172 ~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
....++|||+|||..+++++|+++|++ ||.|..|.+..+.+.++|||||+|.+.++|.+|++ |||..++|+.|+|+++
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQ-FGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGG-TCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHh-cCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 446699999999999999999999999 69999999999887789999999999999999999 9999999999999999
Q ss_pred CCC
Q 024696 251 KTP 253 (264)
Q Consensus 251 ~~~ 253 (264)
+++
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 876
No 72
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=7.6e-18 Score=124.76 Aligned_cols=83 Identities=22% Similarity=0.275 Sum_probs=75.2
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 251 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~ 251 (264)
...++|||+|||..+++++|+++|++ ||.|..|.+..+ +.++|||||+|.+.++|.+|++ ||+..+.|+.|+|+|++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~~~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYK-YGAIRDIDLKNR-RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEECCS-SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEC-CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 35689999999999999999999999 699999999665 4578999999999999999998 99999999999999999
Q ss_pred CCCCCC
Q 024696 252 TPVRPR 257 (264)
Q Consensus 252 ~~~~~~ 257 (264)
+..+++
T Consensus 98 ~~~~~~ 103 (109)
T 1x4a_A 98 SGRGTG 103 (109)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 885433
No 73
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.7e-18 Score=125.97 Aligned_cols=83 Identities=16% Similarity=0.240 Sum_probs=76.5
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceE-EEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCee----
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQ-RLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLP---- 244 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~-~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~---- 244 (264)
...++|||+|||..+++++|+++|++ ||.|. .+++.+++ +.++|||||+|.+.++|++|++ |||..+.|+.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFAT-MGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHH-TTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHH-hCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 35699999999999999999999999 69999 99999885 6799999999999999999999 9999999999
Q ss_pred EEEeecCCCCCC
Q 024696 245 IRVSPSKTPVRP 256 (264)
Q Consensus 245 l~v~~a~~~~~~ 256 (264)
|+|.|+++...+
T Consensus 86 l~v~~a~~~~~~ 97 (99)
T 2div_A 86 FKLNYATYSGPS 97 (99)
T ss_dssp CCEEETTCCSSS
T ss_pred EEEeecCCCCCC
Confidence 999999888443
No 74
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=3.8e-18 Score=126.34 Aligned_cols=76 Identities=18% Similarity=0.189 Sum_probs=71.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCC-----eeEEE
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGS-----LPIRV 247 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g-----~~l~v 247 (264)
..++|||+|||.++++++|+++|++ ||.|..|.++.+ |||||+|.+.++|++|++ |||..+.| +.|+|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMRE-AGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGG-GSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 4589999999999999999999999 699999999887 699999999999999999 99999999 99999
Q ss_pred eecCCCCC
Q 024696 248 SPSKTPVR 255 (264)
Q Consensus 248 ~~a~~~~~ 255 (264)
.+++++.+
T Consensus 88 ~~a~~~~~ 95 (108)
T 1x4c_A 88 KVDGPRSP 95 (108)
T ss_dssp EESSCCSC
T ss_pred EeCCCCCC
Confidence 99998754
No 75
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.77 E-value=6.5e-19 Score=131.80 Aligned_cols=104 Identities=23% Similarity=0.337 Sum_probs=90.1
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecC
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 153 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~ 153 (264)
+...++|||+|||+++++++|+++|+.||.|.++.++.+. .++|||||+|.+.++|.+|++ |||..+.|+.|.|.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP-ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST-TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC-CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 3457899999999999999999999999999999999764 347999999999999999998 99999999999999984
Q ss_pred CCCCCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhhhcCCc
Q 024696 154 TAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCGE 202 (264)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~ 202 (264)
.... . .+++...+++++.++|++ ||.
T Consensus 84 ~~~~------------------~----~~~~~~~~~~~l~~~~~~-~g~ 109 (115)
T 3lqv_A 84 ANRA------------------F----QKMDTKKKEEQLKLLKEK-YGI 109 (115)
T ss_dssp HHHH------------------T----TTSCHHHHHHHHHHHHHH-HCC
T ss_pred CChh------------------h----hhhhHhHhHHHHHHHHHH-hCC
Confidence 2110 0 467788899999999999 573
No 76
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.9e-18 Score=125.25 Aligned_cols=83 Identities=24% Similarity=0.326 Sum_probs=76.3
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC---CCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEee
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY---QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSP 249 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~---~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~ 249 (264)
...++|||+|||..+++++|+++|++ || |..|.++.++ ++++|||||+|.+.++|.+|+.|||..+.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRG-LN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTT-SC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHH-CC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEE
Confidence 34589999999999999999999999 69 9999999875 6789999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 024696 250 SKTPVRPR 257 (264)
Q Consensus 250 a~~~~~~~ 257 (264)
++++...+
T Consensus 91 a~~~~~~~ 98 (104)
T 1wi8_A 91 ADQAQDKD 98 (104)
T ss_dssp CCCCCCCC
T ss_pred ccCCCCCC
Confidence 99886544
No 77
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.77 E-value=6e-18 Score=130.74 Aligned_cols=85 Identities=19% Similarity=0.301 Sum_probs=78.1
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEe
Q 024696 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 248 (264)
Q Consensus 172 ~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~ 248 (264)
....++|||+|||..+++++|+++|++ ||.|..|.+..++ ++++|||||+|.+.++|.+|++ |||..+.|+.|+|.
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFER-YGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHH-HSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 445689999999999999999999999 6999999999876 5789999999999999999999 99999999999999
Q ss_pred ecCCCCCCC
Q 024696 249 PSKTPVRPR 257 (264)
Q Consensus 249 ~a~~~~~~~ 257 (264)
++++...++
T Consensus 118 ~a~~~~~~~ 126 (139)
T 1u6f_A 118 LAASGHQRP 126 (139)
T ss_dssp ESSCCCCCC
T ss_pred ECCCCCCCC
Confidence 999886544
No 78
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.77 E-value=3.1e-18 Score=126.90 Aligned_cols=82 Identities=22% Similarity=0.374 Sum_probs=76.1
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEe
Q 024696 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 248 (264)
Q Consensus 172 ~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~ 248 (264)
.+..++|||+|||..+++++|+++|++ ||.|..|.+..++ +.++|||||+|.+.++|.+|++ +||..+.|++|+|+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEP-FGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTT-TSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 345699999999999999999999999 6999999999875 6789999999999999999998 99999999999999
Q ss_pred ecCCCC
Q 024696 249 PSKTPV 254 (264)
Q Consensus 249 ~a~~~~ 254 (264)
+++++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 998863
No 79
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.9e-18 Score=126.92 Aligned_cols=81 Identities=19% Similarity=0.261 Sum_probs=74.6
Q ss_pred ccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEee
Q 024696 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLP 151 (264)
Q Consensus 73 ~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~-~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~ 151 (264)
+.+...++|||+|||+++|+++|+++|++||+|.+|.++.+.. .++|||||+|.+.++|.+|+++++..+.|++|.|.+
T Consensus 6 ~~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 6 KNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILF 85 (103)
T ss_dssp SSCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEE
T ss_pred cccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3456678999999999999999999999999999999998764 678999999999999999999999999999999998
Q ss_pred cC
Q 024696 152 SK 153 (264)
Q Consensus 152 s~ 153 (264)
+.
T Consensus 86 ~~ 87 (103)
T 1s79_A 86 KD 87 (103)
T ss_dssp HH
T ss_pred ch
Confidence 64
No 80
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3.4e-18 Score=123.13 Aligned_cols=78 Identities=23% Similarity=0.321 Sum_probs=73.2
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 249 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~ 249 (264)
+..++|||+|||..+++++|+++|++ ||.|..+.+..++ ++++|||||+|.+.++|.+|++ |||..+.|++|+|+|
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSK-YGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTT-TSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 45689999999999999999999999 6999999999875 6789999999999999999998 999999999999999
Q ss_pred cC
Q 024696 250 SK 251 (264)
Q Consensus 250 a~ 251 (264)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 86
No 81
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.77 E-value=2.2e-18 Score=122.47 Aligned_cols=79 Identities=22% Similarity=0.355 Sum_probs=73.5
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CC-ceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 175 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QH-STRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 175 ~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~-~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
.++|||+|||.++++++|+++|++ ||.|..+.+..+. +. ++|||||+|.+.++|.+|++ |||..++|+.|+|+++
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFST-YGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 489999999999999999999999 6999999998876 23 88999999999999999999 9999999999999999
Q ss_pred CCCC
Q 024696 251 KTPV 254 (264)
Q Consensus 251 ~~~~ 254 (264)
+|+.
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8773
No 82
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.77 E-value=6.4e-18 Score=126.32 Aligned_cols=86 Identities=23% Similarity=0.382 Sum_probs=77.7
Q ss_pred cccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceE
Q 024696 72 QQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVR 148 (264)
Q Consensus 72 ~~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~ 148 (264)
..+....++|||+|||+++++++|+++|+.||.|..|.++.++. .++|||||+|.+.++|.+|++ |++..+.|++|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34566789999999999999999999999999999999999853 568999999999999999998 999999999999
Q ss_pred EeecCCCCC
Q 024696 149 VLPSKTAIA 157 (264)
Q Consensus 149 V~~s~~~~~ 157 (264)
|.+++....
T Consensus 89 V~~a~~~~~ 97 (115)
T 2dgo_A 89 TNWATRKPP 97 (115)
T ss_dssp EEESSCCCC
T ss_pred EEEccCCCC
Confidence 999875543
No 83
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=128.32 Aligned_cols=78 Identities=22% Similarity=0.220 Sum_probs=73.3
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
...++|||+|||+++++++|+++|++||.|.++.++.|+. .++|||||+|.+.++|++|++ |||..+.|++|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4578999999999999999999999999999999999875 578999999999999999998 9999999999999997
Q ss_pred C
Q 024696 153 K 153 (264)
Q Consensus 153 ~ 153 (264)
.
T Consensus 84 ~ 84 (110)
T 3s8s_A 84 I 84 (110)
T ss_dssp S
T ss_pred C
Confidence 4
No 84
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.76 E-value=3.2e-18 Score=123.46 Aligned_cols=79 Identities=24% Similarity=0.363 Sum_probs=74.1
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
...++|||+|||..+++++|+++|++ ||.|..|.+..++ ++++|||||+|.+.++|.+|++ |||..+.|++|+|+++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQ-AGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 34589999999999999999999999 6999999999876 7789999999999999999999 9999999999999998
Q ss_pred CC
Q 024696 251 KT 252 (264)
Q Consensus 251 ~~ 252 (264)
+.
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 85
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=5e-18 Score=124.40 Aligned_cols=82 Identities=21% Similarity=0.391 Sum_probs=75.8
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
.+...++|||+|||+++|+++|+++|+.||.|..+.+..+.+.++|||||+|.+.++|.+|++ ||+..+.|++|.|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 455788999999999999999999999999999999999855678999999999999999998 9999999999999998
Q ss_pred CCC
Q 024696 153 KTA 155 (264)
Q Consensus 153 ~~~ 155 (264)
+..
T Consensus 91 ~~~ 93 (103)
T 2d9p_A 91 QRK 93 (103)
T ss_dssp SSC
T ss_pred ccc
Confidence 643
No 86
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.76 E-value=2.8e-18 Score=130.06 Aligned_cols=85 Identities=32% Similarity=0.513 Sum_probs=77.6
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEee
Q 024696 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSP 249 (264)
Q Consensus 172 ~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~ 249 (264)
....++|||+|||..+++++|+++|++ ||.|..|.+..++ +.++|||||+|.+.++|.+|+++||..+.|+.|+|.+
T Consensus 33 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 111 (124)
T 2jwn_A 33 EIDKRSVYVGNVDYGSTAQDLEAHFSS-CGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLP 111 (124)
T ss_dssp HHHHTEEEEEEECTTCCHHHHHHHHHT-TSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEE
Confidence 345689999999999999999999999 6999999999874 7899999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 024696 250 SKTPVRPR 257 (264)
Q Consensus 250 a~~~~~~~ 257 (264)
+++.....
T Consensus 112 a~~~~~~~ 119 (124)
T 2jwn_A 112 KRTNMPGI 119 (124)
T ss_dssp SSCCCSSC
T ss_pred CCCCCCCC
Confidence 99875443
No 87
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.7e-18 Score=124.13 Aligned_cols=83 Identities=25% Similarity=0.324 Sum_probs=73.5
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
...++|||+|||..+++++|+++|++ ||.| +++.+. ++++|||||+|.+.++|++|++ |||..+.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEK-ATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSS-CSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 35699999999999999999999999 6987 455553 7789999999999999999999 9999999999999999
Q ss_pred CCCCCCCCC
Q 024696 251 KTPVRPRAP 259 (264)
Q Consensus 251 ~~~~~~~~~ 259 (264)
+++.++++.
T Consensus 89 ~~~~~~~~~ 97 (101)
T 2fc9_A 89 GPRGSPNSG 97 (101)
T ss_dssp SSCCCCCCC
T ss_pred CCCCCCCCC
Confidence 998655543
No 88
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.2e-18 Score=127.07 Aligned_cols=86 Identities=13% Similarity=0.210 Sum_probs=78.1
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEeec
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPS 250 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~a 250 (264)
...++|||+|||..+++++|+++|++ ||.|..|.++.++ +.++|||||+|.+.++|.+|++.++..+.|+.|+|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQ-WGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTS-SCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEEC
Confidence 34589999999999999999999999 6999999999975 67899999999999999999988999999999999999
Q ss_pred CCCCCCCCC
Q 024696 251 KTPVRPRAP 259 (264)
Q Consensus 251 ~~~~~~~~~ 259 (264)
++.....++
T Consensus 104 ~~~~~~~~~ 112 (116)
T 1x4b_A 104 VAREESGSG 112 (116)
T ss_dssp SSCCCCCCS
T ss_pred CCCccCCCC
Confidence 988654433
No 89
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4e-18 Score=125.10 Aligned_cols=84 Identities=26% Similarity=0.369 Sum_probs=76.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCceeEEEEEECCHHHHHHHHH-hCCce-eCCeeEEEeec
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAV-LGSLPIRVSPS 250 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~-l~g~~-~~g~~l~v~~a 250 (264)
..++|||+|||..+++++|+++|++.||.|..|.++.+. +.++|||||+|.+.++|.+|++ |||.. +.|+.|+|.++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a 87 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVA 87 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEc
Confidence 458999999999999999999999824999999999986 7799999999999999999999 99999 99999999999
Q ss_pred CCCCCCC
Q 024696 251 KTPVRPR 257 (264)
Q Consensus 251 ~~~~~~~ 257 (264)
++...++
T Consensus 88 ~~~~~~~ 94 (104)
T 2dhg_A 88 IPKASRV 94 (104)
T ss_dssp CCCCSCC
T ss_pred cCCCcCC
Confidence 8876544
No 90
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.76 E-value=2.5e-18 Score=130.70 Aligned_cols=84 Identities=24% Similarity=0.294 Sum_probs=77.2
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 249 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~ 249 (264)
...++|||+|||..+++++|+++|++ ||.|..|.++.++ +.++|||||+|.+.++|.+|++ |||..+.|+.|+|+|
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAE-YGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 45689999999999999999999999 6999999999885 6789999999999999999998 999999999999999
Q ss_pred cCCCCCCC
Q 024696 250 SKTPVRPR 257 (264)
Q Consensus 250 a~~~~~~~ 257 (264)
+++...++
T Consensus 99 a~~~~~~~ 106 (126)
T 3ex7_B 99 CFVRGPPK 106 (126)
T ss_dssp SEESSSCC
T ss_pred ecCCCCCC
Confidence 98776554
No 91
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=8.4e-18 Score=122.32 Aligned_cols=82 Identities=20% Similarity=0.259 Sum_probs=75.4
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEee
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLP 151 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~ 151 (264)
+....++|||+|||+++++++|+++|+.||.|.++.++.++. .++|||||+|.+.++|.+|+++++..+.|++|.|.+
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKR 85 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEE
Confidence 456778999999999999999999999999999999998864 468999999999999999999999999999999999
Q ss_pred cCCC
Q 024696 152 SKTA 155 (264)
Q Consensus 152 s~~~ 155 (264)
++..
T Consensus 86 a~~~ 89 (99)
T 2dgs_A 86 AEPR 89 (99)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8643
No 92
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-17 Score=122.29 Aligned_cols=84 Identities=18% Similarity=0.273 Sum_probs=76.2
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEeec
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPS 250 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~a 250 (264)
...++|||+|||..+++++|+++|++ ||.|..|.++.++ ++++|||||+|.+.++|.+|++ +++.+.|+.|+|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFST-FGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGG-GSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHh-cCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEec
Confidence 34589999999999999999999999 6999999999975 7899999999999999999998 578999999999999
Q ss_pred CCCCCCCC
Q 024696 251 KTPVRPRA 258 (264)
Q Consensus 251 ~~~~~~~~ 258 (264)
+++.....
T Consensus 91 ~~~~~~~~ 98 (103)
T 2cqg_A 91 NSKQSQDS 98 (103)
T ss_dssp CTTCCCCC
T ss_pred CCCCcCCC
Confidence 98865443
No 93
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=4.3e-18 Score=126.68 Aligned_cols=81 Identities=12% Similarity=0.316 Sum_probs=74.9
Q ss_pred CCceEEEeCCCCCCCHHHHH---HHhhhcCCceEEEEEeccCC-----CceeEEEEEECCHHHHHHHHH-hCCceeCCee
Q 024696 174 CSRTIYCTNIDKKVTQGDIK---LFFESVCGEVQRLRLLGDYQ-----HSTRIAFVEFAMAESAIAALN-CSGAVLGSLP 244 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~---~~F~~~~G~V~~v~i~~~~~-----~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~ 244 (264)
..++|||+|||+.+++++|+ ++|++ ||.|..|.+.++.+ +++|||||+|.+.++|++|++ |||..+.|++
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~-~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGK-FGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTT-TSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhc-cCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 45899999999999999999 99999 69999999998763 577999999999999999999 9999999999
Q ss_pred EEEeecCCCCC
Q 024696 245 IRVSPSKTPVR 255 (264)
Q Consensus 245 l~v~~a~~~~~ 255 (264)
|+|.|++++..
T Consensus 93 l~V~~a~~k~~ 103 (111)
T 2cpi_A 93 LKASLGTTKYC 103 (111)
T ss_dssp EEEESCCCCSC
T ss_pred EEEEecccccc
Confidence 99999998853
No 94
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.76 E-value=2.7e-18 Score=127.48 Aligned_cols=77 Identities=22% Similarity=0.383 Sum_probs=70.7
Q ss_pred CCceEEEeCCCCC-CCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 024696 174 CSRTIYCTNIDKK-VTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 251 (264)
Q Consensus 174 ~~~~l~V~nL~~~-~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~ 251 (264)
..++|||+|||.. +++++|+++|++ ||.|..|.+ ++|||||+|.+.++|.+|++ |||..+.|+.|+|.+++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~-~G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSK-YGRVAGCSV------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGG-GSCCSEEEE------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHh-CCCeEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 4589999999999 999999999999 699999999 45799999999999999998 99999999999999998
Q ss_pred CCCCCC
Q 024696 252 TPVRPR 257 (264)
Q Consensus 252 ~~~~~~ 257 (264)
++..++
T Consensus 99 ~~~~~~ 104 (110)
T 1wf1_A 99 EPKPDR 104 (110)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 775444
No 95
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.76 E-value=1.4e-17 Score=126.23 Aligned_cols=86 Identities=20% Similarity=0.278 Sum_probs=79.0
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
..+++|||+|||..+++++|+++|++ ||.|..|.+..+. ++++|||||+|.+.++|.+|++ +||..+.|+.|+|++|
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHT-TSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 45689999999999999999999999 6999999999886 6789999999999999999999 9999999999999999
Q ss_pred CCCCCCCCC
Q 024696 251 KTPVRPRAP 259 (264)
Q Consensus 251 ~~~~~~~~~ 259 (264)
.+...+.++
T Consensus 112 ~~~~~~~~~ 120 (124)
T 2kt5_A 112 ASQIDLEHH 120 (124)
T ss_dssp CCTTCCCCC
T ss_pred CCCCCCCCC
Confidence 988655543
No 96
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.76 E-value=5.1e-18 Score=120.85 Aligned_cols=78 Identities=31% Similarity=0.560 Sum_probs=73.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecCC
Q 024696 175 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKT 252 (264)
Q Consensus 175 ~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~a~~ 252 (264)
.++|||+|||..+++++|+++|++ ||.|..+.+..++ ++++|||||+|.+.++|.+|+.+||..+.|+.|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHG-CGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGG-GCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 489999999999999999999999 6999999999875 6789999999999999999999999999999999999987
Q ss_pred C
Q 024696 253 P 253 (264)
Q Consensus 253 ~ 253 (264)
+
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 5
No 97
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.76 E-value=5.3e-18 Score=121.57 Aligned_cols=81 Identities=21% Similarity=0.222 Sum_probs=75.1
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecC
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 153 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~ 153 (264)
....++|||+|||+++++++|+++|++||.|..+.+..+.+.++|||||+|.+.++|.+|++ |++..+.|++|+|.+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 45678999999999999999999999999999999998766788999999999999999998 99999999999999986
Q ss_pred CC
Q 024696 154 TA 155 (264)
Q Consensus 154 ~~ 155 (264)
..
T Consensus 85 ~~ 86 (92)
T 2dgv_A 85 NA 86 (92)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 98
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.6e-18 Score=125.61 Aligned_cols=83 Identities=19% Similarity=0.248 Sum_probs=76.6
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEeec
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPS 250 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~a 250 (264)
...++|||+|||..+++++|+++|++ ||.|..|.++.++ +.++|||||+|.+.++|.+|++.++..+.|++|+|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQ-YGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHT-TSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEc
Confidence 45699999999999999999999999 6999999999975 67999999999999999999988999999999999999
Q ss_pred CCCCCC
Q 024696 251 KTPVRP 256 (264)
Q Consensus 251 ~~~~~~ 256 (264)
+++...
T Consensus 93 ~~~~~~ 98 (105)
T 2dh8_A 93 TPRGMQ 98 (105)
T ss_dssp CCSSCC
T ss_pred cCCCCC
Confidence 988543
No 99
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=7.8e-18 Score=120.38 Aligned_cols=78 Identities=21% Similarity=0.310 Sum_probs=71.8
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 251 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~ 251 (264)
...++|||+|||.++++++|+++|++ ||.|..+.+. +|||||+|.+.++|.+|++ +||..+.|++|+|+|++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQ-YGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHT-SSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 35589999999999999999999999 6999999997 4699999999999999998 99999999999999999
Q ss_pred CCCCCC
Q 024696 252 TPVRPR 257 (264)
Q Consensus 252 ~~~~~~ 257 (264)
++..++
T Consensus 79 ~~~~~~ 84 (90)
T 2dnq_A 79 NKSKAS 84 (90)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 885544
No 100
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.2e-18 Score=127.89 Aligned_cols=82 Identities=26% Similarity=0.293 Sum_probs=73.3
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hC--CceeCCeeEEEe
Q 024696 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CS--GAVLGSLPIRVS 248 (264)
Q Consensus 172 ~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~--g~~~~g~~l~v~ 248 (264)
.+++++|||+|||+++++++|+++|++ ||.|.+|.++++ +|||||+|++.++|.+|++ ++ +..+.|++|+|.
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~-fG~V~~v~i~~~----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~ 102 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLP-FGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 102 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTT-TSCCCEEEEEGG----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEE
Confidence 345689999999999999999999999 699999999886 5799999999999999998 76 468999999999
Q ss_pred ecCCCCCCCC
Q 024696 249 PSKTPVRPRA 258 (264)
Q Consensus 249 ~a~~~~~~~~ 258 (264)
||++....+.
T Consensus 103 ~a~~k~~~~~ 112 (119)
T 2ad9_A 103 FSNHKELKTD 112 (119)
T ss_dssp ECSSSSCCCC
T ss_pred EccCCCCCcc
Confidence 9998755543
No 101
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.76 E-value=3.4e-18 Score=120.35 Aligned_cols=72 Identities=18% Similarity=0.172 Sum_probs=67.9
Q ss_pred CCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 77 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 77 ~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
.+..|||+||++.+||++|+++|.+||+|.++++.. ++|||||+|.+.++|++|++ ||+..+.|++|+|+.+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 467899999999999999999999999999999976 45899999999999999998 9999999999999996
No 102
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.4e-18 Score=124.89 Aligned_cols=83 Identities=20% Similarity=0.335 Sum_probs=75.6
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 172 ~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
....++|||+|||..+++++|+++|++ ||.|..|.+..+ +|||||+|.+.++|.+|++ |||..+.|+.|+|.|+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSP-FGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHH-HSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 446689999999999999999999999 699999999887 5799999999999999998 9999999999999999
Q ss_pred CCCCCCCCC
Q 024696 251 KTPVRPRAP 259 (264)
Q Consensus 251 ~~~~~~~~~ 259 (264)
++...++++
T Consensus 97 ~~~~~~~~~ 105 (109)
T 1x4g_A 97 KESPDMTSG 105 (109)
T ss_dssp CCCCSSCCC
T ss_pred CCCCCCCCC
Confidence 998665543
No 103
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.76 E-value=3.8e-18 Score=130.46 Aligned_cols=82 Identities=23% Similarity=0.240 Sum_probs=76.3
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEe
Q 024696 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 248 (264)
Q Consensus 172 ~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~ 248 (264)
..+.++|||+|||..+++++|+++|++ ||.|..|.+..++ ++++|||||+|.+.++|++|++ |||..+.|++|+|+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSK-YGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTT-TSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345689999999999999999999999 6999999999875 6799999999999999999999 99999999999999
Q ss_pred ecCCCC
Q 024696 249 PSKTPV 254 (264)
Q Consensus 249 ~a~~~~ 254 (264)
|++++.
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 998863
No 104
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=8.3e-18 Score=120.23 Aligned_cols=80 Identities=24% Similarity=0.331 Sum_probs=72.6
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 251 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~ 251 (264)
...++|||+|||..+++++|+++|++ ||.|..+.+.++ ||||+|.+.++|.+|++ |||..+.|++|+|.+++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~~~~~~~------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFER-RGRVIECDVVKD------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHH-HSCEEEEEECSS------CEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHc-CCCEEEEEEECC------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 35689999999999999999999999 699999999754 99999999999999998 99999999999999999
Q ss_pred CCCCCCCC
Q 024696 252 TPVRPRAP 259 (264)
Q Consensus 252 ~~~~~~~~ 259 (264)
+...++++
T Consensus 80 ~~~~~~~~ 87 (90)
T 2dnp_A 80 KGQKKSGP 87 (90)
T ss_dssp CCCCCCSC
T ss_pred CCCCCCCC
Confidence 98554444
No 105
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.76 E-value=2.3e-18 Score=128.06 Aligned_cols=78 Identities=17% Similarity=0.114 Sum_probs=70.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 251 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G-~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~ 251 (264)
...+|||+|||+++++++|+++|++ || .|..+.+..+ +++|||||+|.+.++|.+|++ |||..+.|++|+|.+++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~-~G~~v~~v~i~~~--~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARE-NSLETTFSSVNTR--DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHH-HTCCCSEEECSSC--SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHH-hCCeeEEEEEEcC--CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 4589999999999999999999999 69 8999998643 478999999999999999998 99999999999999998
Q ss_pred CCC
Q 024696 252 TPV 254 (264)
Q Consensus 252 ~~~ 254 (264)
.++
T Consensus 104 ~~p 106 (111)
T 2jvr_A 104 NPP 106 (111)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 106
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.76 E-value=5.7e-18 Score=123.25 Aligned_cols=78 Identities=26% Similarity=0.344 Sum_probs=72.9
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEE--------EEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeC
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQR--------LRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLG 241 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~--------v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~ 241 (264)
...++|||+|||.++++++|+++|++ ||.|.. +++..++ ++++|||||+|.+.++|.+|++ |||..+.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~ 89 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQ-IGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 89 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTT-TSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-hCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 35599999999999999999999999 699999 9999875 6899999999999999999998 9999999
Q ss_pred CeeEEEeecC
Q 024696 242 SLPIRVSPSK 251 (264)
Q Consensus 242 g~~l~v~~a~ 251 (264)
|+.|+|++|+
T Consensus 90 g~~l~V~~A~ 99 (99)
T 2la6_A 90 GNPIKVSFAT 99 (99)
T ss_dssp SSBCEEEECC
T ss_pred CcEEEEEecC
Confidence 9999999985
No 107
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.2e-18 Score=127.84 Aligned_cols=83 Identities=22% Similarity=0.322 Sum_probs=76.8
Q ss_pred cccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEe
Q 024696 72 QQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 150 (264)
Q Consensus 72 ~~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~ 150 (264)
.......++|||+|||+++++++|+++|+.||+|.++.+..+.+.++|||||+|.+.++|.+|++ ++|..+.|++|+|.
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34456788999999999999999999999999999999999887788999999999999999998 99999999999999
Q ss_pred ecCC
Q 024696 151 PSKT 154 (264)
Q Consensus 151 ~s~~ 154 (264)
+++.
T Consensus 103 ~a~~ 106 (109)
T 2err_A 103 NATA 106 (109)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9853
No 108
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.76 E-value=8e-19 Score=126.04 Aligned_cols=77 Identities=21% Similarity=0.213 Sum_probs=69.8
Q ss_pred CcEEEEcCCCCcCCHHHHHHHhhcCC-CeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-h-cCCCCCCcceEEeec
Q 024696 78 RRTVYVSDIDQQVTEEQLATLFLTCG-QVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-L-AGTMLGFYPVRVLPS 152 (264)
Q Consensus 78 ~~~v~V~nLp~~~te~~L~~~F~~~G-~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l-~~~~~~g~~l~V~~s 152 (264)
+.+|||+|||+++||++|+++|++|| +|.+|++++|+. .++|||||+|.+.++|.+|++ + ++..++|++|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 899999998874 578999999999999999997 6 456799999999998
Q ss_pred CC
Q 024696 153 KT 154 (264)
Q Consensus 153 ~~ 154 (264)
..
T Consensus 81 ~~ 82 (91)
T 2lxi_A 81 DP 82 (91)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 109
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.75 E-value=1.3e-17 Score=122.56 Aligned_cols=82 Identities=27% Similarity=0.383 Sum_probs=74.6
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCCCCCC---cceE
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALS-LAGTMLGF---YPVR 148 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~-~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g---~~l~ 148 (264)
.....++|||+|||+++++++|+++|+.||.|.++.++.++. .++|||||+|.+.++|.+|++ ||+..+.| ++|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 445688999999999999999999999999999999998864 468999999999999999998 99999988 9999
Q ss_pred EeecCCC
Q 024696 149 VLPSKTA 155 (264)
Q Consensus 149 V~~s~~~ 155 (264)
|.+++..
T Consensus 91 V~~a~~~ 97 (105)
T 2dnh_A 91 VKFADTD 97 (105)
T ss_dssp EEESCSS
T ss_pred EEECccC
Confidence 9998643
No 110
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1e-17 Score=123.50 Aligned_cols=83 Identities=20% Similarity=0.285 Sum_probs=75.4
Q ss_pred ccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecC---CCCCceEEEEEecCHHHHHHHHH-h-cCCCCCCcce
Q 024696 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGD---PNSVLRFAFVEFTDEEGARAALS-L-AGTMLGFYPV 147 (264)
Q Consensus 73 ~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~---~~~s~G~afV~F~~~~~a~~Ai~-l-~~~~~~g~~l 147 (264)
......++|||+|||+++++++|+++|+.||.|..|.++.+ .+.++|||||+|.+.++|.+|++ | |+..+.|++|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34567789999999999999999999999999999999988 34578999999999999999998 8 8999999999
Q ss_pred EEeecCCC
Q 024696 148 RVLPSKTA 155 (264)
Q Consensus 148 ~V~~s~~~ 155 (264)
.|.+++..
T Consensus 90 ~v~~a~~~ 97 (107)
T 2cph_A 90 VLEWADSE 97 (107)
T ss_dssp EEEECCCC
T ss_pred EEEeCCCC
Confidence 99998643
No 111
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.6e-18 Score=126.23 Aligned_cols=78 Identities=21% Similarity=0.260 Sum_probs=73.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecCC
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKT 252 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~a~~ 252 (264)
..++|||+|||+++|+++|+++|++ ||.|.+|.+++++ +.++|||||+|.+.++|.+|++++|+.+.|+.|.|.+++.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~-~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLED-KGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHT-SSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhh-cCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEchH
Confidence 3489999999999999999999999 6999999999977 7899999999999999999999999999999999998765
No 112
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.3e-17 Score=120.26 Aligned_cols=80 Identities=28% Similarity=0.403 Sum_probs=74.2
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
...++|||+|||+++++++|+++|++||.|.++.++.++. .++|||||+|.+.++|.+|++ ||+..+.|++|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4678999999999999999999999999999999999864 578999999999999999998 9999999999999998
Q ss_pred CCC
Q 024696 153 KTA 155 (264)
Q Consensus 153 ~~~ 155 (264)
+..
T Consensus 83 ~~~ 85 (95)
T 2dnz_A 83 TER 85 (95)
T ss_dssp SCC
T ss_pred ccc
Confidence 643
No 113
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.75 E-value=8e-18 Score=119.43 Aligned_cols=77 Identities=19% Similarity=0.214 Sum_probs=71.8
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEeec
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPS 250 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~a 250 (264)
...++|||+|||+.+++++|+++|++ ||.|..+.++.++ ++++|||||+|.+.++|.+|+++++..+.|+.|+|++|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTK-FGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTT-TSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 35589999999999999999999999 6999999999875 78999999999999999999998889999999999986
No 114
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.4e-17 Score=119.49 Aligned_cols=78 Identities=24% Similarity=0.338 Sum_probs=71.8
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 251 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~ 251 (264)
...++|||+|||..+++++|+++|++ ||.|..|.+.++ ||||+|.+.++|.+|++ |||..+.|+.|+|++++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~v~~~~~------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEE-YGPVIECDIVKD------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHT-TSCCCEEEECSS------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEECC------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 35699999999999999999999999 699999999754 99999999999999998 99999999999999999
Q ss_pred CCCCCC
Q 024696 252 TPVRPR 257 (264)
Q Consensus 252 ~~~~~~ 257 (264)
++..+.
T Consensus 81 ~~~~~~ 86 (92)
T 2dgt_A 81 SRLRTA 86 (92)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 885544
No 115
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.6e-18 Score=123.17 Aligned_cols=79 Identities=22% Similarity=0.215 Sum_probs=73.6
Q ss_pred CCCcEEEEcCCCCcCCHHHHH----HHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEe
Q 024696 76 VIRRTVYVSDIDQQVTEEQLA----TLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 150 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~----~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~ 150 (264)
....+|||+|||+++++++|+ ++|++||+|.+|.++.++.+ +|||||+|.+.++|.+|++ |||..+.|++|+|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 456789999999999999999 99999999999999998876 8999999999999999998 99999999999999
Q ss_pred ecCCC
Q 024696 151 PSKTA 155 (264)
Q Consensus 151 ~s~~~ 155 (264)
+++..
T Consensus 86 ~a~~~ 90 (96)
T 2dgx_A 86 LATGA 90 (96)
T ss_dssp ECCCS
T ss_pred EcCCC
Confidence 98643
No 116
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.8e-18 Score=124.09 Aligned_cols=83 Identities=27% Similarity=0.336 Sum_probs=76.0
Q ss_pred ccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEE
Q 024696 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 149 (264)
Q Consensus 73 ~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V 149 (264)
.+....++|||+|||+++++++|+++|+.||.|..+.++.++. .++|||||+|.+.++|.+|++ ||+..+.|++|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 3456788999999999999999999999999999999998864 468999999999999999998 9999999999999
Q ss_pred eecCCC
Q 024696 150 LPSKTA 155 (264)
Q Consensus 150 ~~s~~~ 155 (264)
.+++..
T Consensus 88 ~~a~~~ 93 (103)
T 2dnm_A 88 QVARYG 93 (103)
T ss_dssp EECSSC
T ss_pred EECCcC
Confidence 998643
No 117
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.8e-18 Score=124.05 Aligned_cols=84 Identities=21% Similarity=0.313 Sum_probs=76.4
Q ss_pred cccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceE
Q 024696 72 QQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVR 148 (264)
Q Consensus 72 ~~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~ 148 (264)
.++....++|||+|||+++++++|+++|+.||+|..|.++.++. .++|||||+|.+.++|.+|++ |++..+.|++|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 34566789999999999999999999999999999999998863 568999999999999999998 999999999999
Q ss_pred EeecCCC
Q 024696 149 VLPSKTA 155 (264)
Q Consensus 149 V~~s~~~ 155 (264)
|.+++..
T Consensus 89 v~~a~~~ 95 (103)
T 2cq0_A 89 VEWAKPS 95 (103)
T ss_dssp EEESSCC
T ss_pred EEECCCC
Confidence 9998643
No 118
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.75 E-value=1.5e-18 Score=124.15 Aligned_cols=76 Identities=18% Similarity=0.278 Sum_probs=67.8
Q ss_pred cEEEEcCCCCcCCHHHHHHHhhcCC--CeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecC
Q 024696 79 RTVYVSDIDQQVTEEQLATLFLTCG--QVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 153 (264)
Q Consensus 79 ~~v~V~nLp~~~te~~L~~~F~~~G--~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~ 153 (264)
.+|||+|||+++|+++|+++|+.|| .|.++.++.++. .++|||||+|.+.++|.+|++ |||..+.|++|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 999999999864 578999999999999999997 99999999999999985
Q ss_pred C
Q 024696 154 T 154 (264)
Q Consensus 154 ~ 154 (264)
.
T Consensus 82 ~ 82 (90)
T 3p5t_L 82 K 82 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 119
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.5e-17 Score=121.67 Aligned_cols=80 Identities=24% Similarity=0.272 Sum_probs=72.1
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-h--CCceeCCeeEEEee
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-C--SGAVLGSLPIRVSP 249 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l--~g~~~~g~~l~v~~ 249 (264)
.++++|||+|||..+++++|+++|++ ||.|..|.+.++ +|||||+|.+.++|.+|++ + ++..+.|++|+|.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~-fG~v~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLP-FGKVTNILMLKG----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTT-TSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 45689999999999999999999999 699999999876 5799999999999999997 6 57889999999999
Q ss_pred cCCCCCCC
Q 024696 250 SKTPVRPR 257 (264)
Q Consensus 250 a~~~~~~~ 257 (264)
+++....+
T Consensus 88 a~~~~~~~ 95 (101)
T 2cq1_A 88 SNHKELKT 95 (101)
T ss_dssp CSCSSCCC
T ss_pred cCcccCcC
Confidence 99875544
No 120
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3.9e-18 Score=124.82 Aligned_cols=78 Identities=24% Similarity=0.308 Sum_probs=70.2
Q ss_pred cCCceEEEeCCCC-CCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCC--ceeCCeeEEEe
Q 024696 173 MCSRTIYCTNIDK-KVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSG--AVLGSLPIRVS 248 (264)
Q Consensus 173 ~~~~~l~V~nL~~-~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g--~~~~g~~l~v~ 248 (264)
.++++|||+|||+ .+++++|+++|++ ||.|.+|.+++++ |||||+|++.++|..|++ ||+ ..+.|++|+|.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~-fG~V~~v~i~~~k----g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEP-FGVISNHLILNKI----NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGG-GSCEEEEEECSSS----SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHh-cCCEEEEEEEcCC----CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 3568999999999 9999999999999 6999999998764 699999999999999998 875 45999999999
Q ss_pred ecCCCCC
Q 024696 249 PSKTPVR 255 (264)
Q Consensus 249 ~a~~~~~ 255 (264)
||++..+
T Consensus 88 ~a~~~~~ 94 (102)
T 1x4d_A 88 LSQKYKR 94 (102)
T ss_dssp EECCCTT
T ss_pred ECCCCCC
Confidence 9987644
No 121
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.8e-18 Score=125.17 Aligned_cols=78 Identities=23% Similarity=0.300 Sum_probs=70.6
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcC--CCCCCcceEEe
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAG--TMLGFYPVRVL 150 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~--~~~~g~~l~V~ 150 (264)
.+...++|||+|||+++|+++|+++|++||.|.+|.++++ +|||||+|.+.++|..|++ +++ ..+.|++|+|.
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 3556789999999999999999999999999999999987 3899999999999999998 764 67999999999
Q ss_pred ecCCC
Q 024696 151 PSKTA 155 (264)
Q Consensus 151 ~s~~~ 155 (264)
+++..
T Consensus 88 ~A~~~ 92 (105)
T 1sjq_A 88 FSNHK 92 (105)
T ss_dssp CCSSS
T ss_pred EcCCC
Confidence 98654
No 122
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4.3e-18 Score=123.56 Aligned_cols=80 Identities=28% Similarity=0.422 Sum_probs=73.8
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC-----CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEE
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-----SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 149 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~-----~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V 149 (264)
...++|||+|||+++++++|+++|+.||.|..|.+..+.. .++|||||+|.+.++|.+|++ |++..+.|++|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4568999999999999999999999999999999998765 468999999999999999998 9999999999999
Q ss_pred eecCCC
Q 024696 150 LPSKTA 155 (264)
Q Consensus 150 ~~s~~~ 155 (264)
.+++..
T Consensus 83 ~~a~~~ 88 (98)
T 2cpf_A 83 RISERA 88 (98)
T ss_dssp ECSSCS
T ss_pred EEccCC
Confidence 998654
No 123
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.75 E-value=8.3e-18 Score=126.28 Aligned_cols=79 Identities=22% Similarity=0.302 Sum_probs=73.3
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEe
Q 024696 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 248 (264)
Q Consensus 172 ~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~ 248 (264)
....++|||+|||.++++++|+++|++ ||.|..|.+..++ ++++|||||+|.+.++|.+|++ |||..++|++|+|+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLP-FGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTT-SCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 446689999999999999999999999 6999999999875 6789999999999999999998 99999999999999
Q ss_pred ecC
Q 024696 249 PSK 251 (264)
Q Consensus 249 ~a~ 251 (264)
|++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 985
No 124
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.75 E-value=7.6e-18 Score=122.39 Aligned_cols=77 Identities=19% Similarity=0.232 Sum_probs=69.9
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCce--eCCeeEEEe
Q 024696 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAV--LGSLPIRVS 248 (264)
Q Consensus 172 ~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~--~~g~~l~v~ 248 (264)
.+++++|||+|||+++|+++|+++|++ ||.|.++.++++ ||+|||+|++.++|.+|++ ++|.. +.|++|+|+
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~-fG~V~~v~i~~~----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~ 92 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQE-FGPISYVVVMPK----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVN 92 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhc-cCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEE
Confidence 346799999999999999999999999 699999999864 4699999999999999998 88875 789999999
Q ss_pred ecCCC
Q 024696 249 PSKTP 253 (264)
Q Consensus 249 ~a~~~ 253 (264)
||+++
T Consensus 93 ~S~~k 97 (100)
T 3r27_A 93 YSTSQ 97 (100)
T ss_dssp ECSCS
T ss_pred ecccc
Confidence 99875
No 125
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=121.69 Aligned_cols=81 Identities=21% Similarity=0.349 Sum_probs=74.5
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEee
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 151 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~ 151 (264)
.+...++|||+|||+++++++|+++|+.||.|.++.++.++ +.++|||||+|.+.++|.+|++ |++..+.|++|+|.+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44567899999999999999999999999999999999987 3568999999999999999997 999999999999999
Q ss_pred cCC
Q 024696 152 SKT 154 (264)
Q Consensus 152 s~~ 154 (264)
++.
T Consensus 93 a~~ 95 (100)
T 2do4_A 93 SNS 95 (100)
T ss_dssp CCC
T ss_pred CCC
Confidence 853
No 126
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-17 Score=121.37 Aligned_cols=81 Identities=26% Similarity=0.305 Sum_probs=74.7
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEee
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 151 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~ 151 (264)
....++|||+|||+++++++|+++|+.||+|.++.++.++. .++|||||+|.+.++|.+|++ ||+..+.|++|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999998863 568999999999999999997 999999999999999
Q ss_pred cCCC
Q 024696 152 SKTA 155 (264)
Q Consensus 152 s~~~ 155 (264)
++..
T Consensus 85 a~~~ 88 (99)
T 1whw_A 85 STIK 88 (99)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8654
No 127
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.75 E-value=1.4e-17 Score=124.87 Aligned_cols=82 Identities=18% Similarity=0.328 Sum_probs=75.3
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
....++|||+|||+++++++|+++|+.||.|..|.+..+. +.++|||||+|.+.++|++|++ |||..+.|++|.|.++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 4567899999999999999999999999999999999987 3568999999999999999998 9999999999999998
Q ss_pred CCCC
Q 024696 153 KTAI 156 (264)
Q Consensus 153 ~~~~ 156 (264)
+...
T Consensus 84 ~~~~ 87 (116)
T 2fy1_A 84 KKPS 87 (116)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7543
No 128
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.75 E-value=6.8e-18 Score=118.84 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=68.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 251 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~ 251 (264)
.+..|||+||++.+|+++|+++|.+ ||+|.++.+.. ++|||||+|.+.++|.+|++ |||..+.|++|+|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q-~G~V~~~~l~~----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQ-HGPLVSFHPYL----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHH-HSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHh-hCCEEEEEEcC----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 4578999999999999999999999 69999999966 56799999999999999999 99999999999999984
No 129
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.75 E-value=1.2e-17 Score=124.94 Aligned_cols=86 Identities=20% Similarity=0.412 Sum_probs=77.0
Q ss_pred cccccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcc
Q 024696 70 NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYP 146 (264)
Q Consensus 70 ~~~~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~ 146 (264)
.........++|||+|||+++++++|+++|+.||.|.+|.++.++. .++|||||+|.+.++|.+|++ ||+..+.|++
T Consensus 17 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 96 (115)
T 2cpz_A 17 GSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKR 96 (115)
T ss_dssp SCCCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred ccCcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 3344556678999999999999999999999999999999999863 568999999999999999997 9999999999
Q ss_pred eEEeecCCC
Q 024696 147 VRVLPSKTA 155 (264)
Q Consensus 147 l~V~~s~~~ 155 (264)
|+|.+++..
T Consensus 97 l~V~~a~~~ 105 (115)
T 2cpz_A 97 LKVQLKRSK 105 (115)
T ss_dssp CEEECCCCS
T ss_pred EEEEEcCCC
Confidence 999998644
No 130
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.75 E-value=1.2e-18 Score=127.35 Aligned_cols=79 Identities=16% Similarity=0.175 Sum_probs=74.0
Q ss_pred CCceEEEeCCCC------CCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCC-e
Q 024696 174 CSRTIYCTNIDK------KVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGS-L 243 (264)
Q Consensus 174 ~~~~l~V~nL~~------~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g-~ 243 (264)
.+++|||+|||. ++++++|+++|++ ||.|.+|.++.++ ++++|||||+|.+.++|.+|++ |||..+.| +
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~-~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSK-AGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHT-TSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHh-cCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 358999999999 9999999999999 6999999999886 6799999999999999999998 99999999 9
Q ss_pred eEEEeecCCC
Q 024696 244 PIRVSPSKTP 253 (264)
Q Consensus 244 ~l~v~~a~~~ 253 (264)
.|+|.+++|.
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999999764
No 131
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.75 E-value=2.4e-18 Score=124.45 Aligned_cols=80 Identities=19% Similarity=0.205 Sum_probs=71.4
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCC--eeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCC----CCCc
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQ--VVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTM----LGFY 145 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~--I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~----~~g~ 145 (264)
...-.+|||+|||+++|+++|+++|++||. +.+|++++|+. .++|||||+|.+.++|.+|++ +|+.. +.|+
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr 85 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGK 85 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCE
Confidence 345678999999999999999999999995 67899999874 578999999999999999998 99874 8899
Q ss_pred ceEEeecCC
Q 024696 146 PVRVLPSKT 154 (264)
Q Consensus 146 ~l~V~~s~~ 154 (264)
+|.|.+++.
T Consensus 86 ~i~V~~Aks 94 (95)
T 2lkz_A 86 TIGVDFAKS 94 (95)
T ss_dssp EEEEEECCC
T ss_pred EEEEEEccC
Confidence 999999863
No 132
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=6.3e-18 Score=121.68 Aligned_cols=81 Identities=23% Similarity=0.289 Sum_probs=74.2
Q ss_pred ccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEE
Q 024696 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 149 (264)
Q Consensus 73 ~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V 149 (264)
..+...++|||+|||+++++++|+++|+.||+|.++.++.++. .++|||||+|.+.++|.+|++ ||+..+.|++|+|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 90 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKA 90 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 3455678999999999999999999999999999999998864 468999999999999999997 9999999999999
Q ss_pred eecC
Q 024696 150 LPSK 153 (264)
Q Consensus 150 ~~s~ 153 (264)
.+++
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9873
No 133
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.75 E-value=5.3e-18 Score=119.73 Aligned_cols=79 Identities=30% Similarity=0.408 Sum_probs=72.7
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEee
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 151 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~ 151 (264)
+...++|||+|||+++++++|+++|++||.|.++.++.+.. .++|||||+|.+.++|.+|++ ||+..+.|++|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999988754 368999999999999999997 999999999999999
Q ss_pred cC
Q 024696 152 SK 153 (264)
Q Consensus 152 s~ 153 (264)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 134
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.75 E-value=1.5e-18 Score=158.36 Aligned_cols=82 Identities=15% Similarity=0.293 Sum_probs=75.9
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 249 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~ 249 (264)
...++|||+|||..+|+++|.++|++ ||.|..|.|+.+. ++++|||||+|.+.++|.+|++ |||..|.|+.|.|.|
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEV-YGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-cCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34589999999999999999999999 6999999999874 7789999999999999999998 999999999999999
Q ss_pred cCCCCC
Q 024696 250 SKTPVR 255 (264)
Q Consensus 250 a~~~~~ 255 (264)
+++...
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 987643
No 135
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.1e-18 Score=121.59 Aligned_cols=80 Identities=25% Similarity=0.267 Sum_probs=74.2
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEe
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 150 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~ 150 (264)
++...++|||+|||+++++++|+++|+.||.|..+.++.++. .++|||||+|.+.++|.+|++ ||+..+.|++|+|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 455678999999999999999999999999999999998864 468999999999999999998 99999999999999
Q ss_pred ecC
Q 024696 151 PSK 153 (264)
Q Consensus 151 ~s~ 153 (264)
+++
T Consensus 91 ~a~ 93 (95)
T 2cqc_A 91 GPS 93 (95)
T ss_dssp CCS
T ss_pred ecC
Confidence 985
No 136
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.9e-18 Score=129.04 Aligned_cols=81 Identities=30% Similarity=0.549 Sum_probs=75.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecC
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSK 251 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~a~ 251 (264)
..++|||+|||..+++++|+++|++ ||.|..|.++.++ +.++|||||+|.+.++|.+|+.|||..+.|+.|+|.+++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSA-VGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTT-TSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-CCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecC
Confidence 4589999999999999999999999 6999999999876 678999999999999999999999999999999999998
Q ss_pred CCCC
Q 024696 252 TPVR 255 (264)
Q Consensus 252 ~~~~ 255 (264)
+...
T Consensus 103 ~~~~ 106 (114)
T 2cq4_A 103 AEKN 106 (114)
T ss_dssp HHHH
T ss_pred CCcc
Confidence 7643
No 137
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.74 E-value=6.4e-18 Score=125.17 Aligned_cols=78 Identities=27% Similarity=0.501 Sum_probs=71.5
Q ss_pred cccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q 024696 171 REMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 249 (264)
Q Consensus 171 ~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~ 249 (264)
.....++|||+|||..+++++|+++|++ ||.|..|.+. +|||||+|.+.++|.+|++ |||..++|+.|+|.|
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGP-FGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTT-TSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3456799999999999999999999999 6999999997 5799999999999999998 999999999999999
Q ss_pred cCCCCC
Q 024696 250 SKTPVR 255 (264)
Q Consensus 250 a~~~~~ 255 (264)
++++..
T Consensus 100 a~~~~~ 105 (108)
T 2jvo_A 100 SKLPAK 105 (108)
T ss_dssp CSCCC-
T ss_pred ecCCCC
Confidence 998744
No 138
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.74 E-value=1.6e-17 Score=130.99 Aligned_cols=84 Identities=23% Similarity=0.258 Sum_probs=77.4
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 249 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~ 249 (264)
...++|||+|||..+++++|+++|++ ||.|..|.|+.++ +.++|||||+|.+.++|.+|++ |||..+.|++|+|.|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSK-SGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45689999999999999999999999 6999999999886 6789999999999999999999 999999999999999
Q ss_pred cCCCCCCC
Q 024696 250 SKTPVRPR 257 (264)
Q Consensus 250 a~~~~~~~ 257 (264)
+++..+.+
T Consensus 116 a~~~~~~~ 123 (156)
T 1h2v_Z 116 DAGFKEGR 123 (156)
T ss_dssp ESCCCTTC
T ss_pred CCCCCCcC
Confidence 99875544
No 139
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.74 E-value=1.3e-17 Score=122.91 Aligned_cols=78 Identities=22% Similarity=0.321 Sum_probs=73.7
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
...++|||+|||..+++++|+++|++ ||.|..|.+..+. ++++|||||+|.+.++|.+|++ |||..+.|+.|+|+++
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 45689999999999999999999999 6999999999886 7789999999999999999999 9999999999999998
Q ss_pred C
Q 024696 251 K 251 (264)
Q Consensus 251 ~ 251 (264)
+
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 6
No 140
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.74 E-value=6.2e-18 Score=120.00 Aligned_cols=80 Identities=24% Similarity=0.367 Sum_probs=72.7
Q ss_pred ccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEe
Q 024696 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVL 150 (264)
Q Consensus 73 ~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~ 150 (264)
.++...++|||+|||+++++++|+++|++||.|.++.++.++. .++|||||+|.+.++|.+|+++++..+.|++|.|+
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPK 85 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456788999999999999999999999999999999998864 56899999999999999999988888999999998
Q ss_pred ec
Q 024696 151 PS 152 (264)
Q Consensus 151 ~s 152 (264)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 74
No 141
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.74 E-value=5.8e-18 Score=120.06 Aligned_cols=78 Identities=24% Similarity=0.387 Sum_probs=71.7
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
...++|||+|||+++++++|+++|+.||.|.++.++.++. .++|||||+|.+.++|.+|++ ||+..+.|++|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 3567899999999999999999999999999999998853 568999999999999999998 9999999999999998
Q ss_pred C
Q 024696 153 K 153 (264)
Q Consensus 153 ~ 153 (264)
+
T Consensus 84 ~ 84 (87)
T 3bs9_A 84 T 84 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 142
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.74 E-value=5.2e-18 Score=122.37 Aligned_cols=80 Identities=34% Similarity=0.507 Sum_probs=74.2
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEee
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 151 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~-~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~ 151 (264)
.+...++|||+|||+++++++|+++|+.||+|.++.+..++. .++|||||+|.+.++|.+|++ ||+..+.|++|+|.+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 455678999999999999999999999999999999998874 568999999999999999998 999999999999999
Q ss_pred cC
Q 024696 152 SK 153 (264)
Q Consensus 152 s~ 153 (264)
++
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 143
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=119.10 Aligned_cols=79 Identities=22% Similarity=0.300 Sum_probs=74.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecCC
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKT 252 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~a~~ 252 (264)
..++|||+|||.++++++|+++|++ | .|..|.++.+. ++++|||||+|.+.++|.+|+++||..++|+.|+|.++++
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~-~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~~ 86 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAP-L-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKS 86 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTT-S-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEESS
T ss_pred CccEEEEECCCCCCCHHHHHHHHhh-C-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECCc
Confidence 4589999999999999999999999 7 89999999875 7899999999999999999999999999999999999988
Q ss_pred CC
Q 024696 253 PV 254 (264)
Q Consensus 253 ~~ 254 (264)
++
T Consensus 87 ~~ 88 (91)
T 2dgw_A 87 GP 88 (91)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 144
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-17 Score=124.03 Aligned_cols=82 Identities=22% Similarity=0.286 Sum_probs=72.6
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCce----EEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEE
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEV----QRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRV 247 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V----~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v 247 (264)
..+++|||+|||..+++++|+++|++ ||.| ..+.+. .++++|||||+|.+.++|.+|++ |||..+.|+.|+|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~-~G~v~~~~~~~~~~--~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFAR-FQEKKGPPIQFRMM--TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHH-HHHSSSSCCEEEEE--CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-hCCccceEEEEEcC--CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 45689999999999999999999999 6998 455554 46788999999999999999998 9999999999999
Q ss_pred eecCCCCCCC
Q 024696 248 SPSKTPVRPR 257 (264)
Q Consensus 248 ~~a~~~~~~~ 257 (264)
.|++++..++
T Consensus 100 ~~a~~~~~~~ 109 (115)
T 2cpx_A 100 EFGKNKKQRS 109 (115)
T ss_dssp EECCCCSCCC
T ss_pred EEccCCCCCC
Confidence 9999885433
No 145
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.8e-17 Score=121.79 Aligned_cols=83 Identities=33% Similarity=0.419 Sum_probs=75.8
Q ss_pred ccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEE
Q 024696 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 149 (264)
Q Consensus 73 ~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V 149 (264)
.+....++|||+|||+++++++|+++|++||.|..|.++.++. .++|||||+|.+.++|.+|++ |++..+.|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3456778999999999999999999999999999999999863 578999999999999999998 9999999999999
Q ss_pred eecCCC
Q 024696 150 LPSKTA 155 (264)
Q Consensus 150 ~~s~~~ 155 (264)
.+++..
T Consensus 90 ~~a~~~ 95 (105)
T 1x5u_A 90 NKASAH 95 (105)
T ss_dssp EETTTT
T ss_pred EECCCC
Confidence 998643
No 146
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.74 E-value=9.3e-18 Score=121.93 Aligned_cols=78 Identities=23% Similarity=0.208 Sum_probs=70.0
Q ss_pred ccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCC--CCCcceEE
Q 024696 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTM--LGFYPVRV 149 (264)
Q Consensus 73 ~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~--~~g~~l~V 149 (264)
.....+++|||+|||+++|+++|+++|++||.|.++.++++ +|+|||+|.+.++|.+|++ +++.. +.|++|+|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 34556789999999999999999999999999999999865 3799999999999999998 98876 78999999
Q ss_pred eecCC
Q 024696 150 LPSKT 154 (264)
Q Consensus 150 ~~s~~ 154 (264)
++|+.
T Consensus 92 ~~S~~ 96 (100)
T 3r27_A 92 NYSTS 96 (100)
T ss_dssp EECSC
T ss_pred Eeccc
Confidence 99864
No 147
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.74 E-value=1.8e-17 Score=122.75 Aligned_cols=84 Identities=26% Similarity=0.395 Sum_probs=76.3
Q ss_pred cccccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcc
Q 024696 70 NAQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYP 146 (264)
Q Consensus 70 ~~~~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~ 146 (264)
...+.+...++|||+|||+++++++|+++|+.||.|.++.++.++. .++|||||+|.+.++|.+|++ ++|..+.|++
T Consensus 18 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 97 (108)
T 2jrs_A 18 NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 97 (108)
T ss_dssp SSCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred ccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 3344566788999999999999999999999999999999998864 468999999999999999998 9999999999
Q ss_pred eEEeecC
Q 024696 147 VRVLPSK 153 (264)
Q Consensus 147 l~V~~s~ 153 (264)
|+|.+++
T Consensus 98 l~V~~a~ 104 (108)
T 2jrs_A 98 MKVGHVT 104 (108)
T ss_dssp CEEECSC
T ss_pred EEEEEcc
Confidence 9999985
No 148
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=122.06 Aligned_cols=82 Identities=20% Similarity=0.331 Sum_probs=75.0
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEe
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 150 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~ 150 (264)
.....++|||+|||+++++++|+++|+.||+|..+.++.++. .++|||||+|.+.++|.+|++ ||+..+.|++|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345678999999999999999999999999999999998764 468999999999999999997 99999999999999
Q ss_pred ecCCC
Q 024696 151 PSKTA 155 (264)
Q Consensus 151 ~s~~~ 155 (264)
+++..
T Consensus 88 ~a~~~ 92 (102)
T 1x5s_A 88 QAGKS 92 (102)
T ss_dssp EEECC
T ss_pred ECCCC
Confidence 98643
No 149
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.74 E-value=1.5e-17 Score=123.37 Aligned_cols=83 Identities=19% Similarity=0.208 Sum_probs=73.3
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEee
Q 024696 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSP 249 (264)
Q Consensus 172 ~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~ 249 (264)
....++|||+|||..+++++|+++|++ ||.|..|.+..+. +.++|||||+|.+.++|.+|++..|..++|+.|+|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~-~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQ-FGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTT-TSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHc-cCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEE
Confidence 345689999999999999999999999 6999999999986 7899999999999999999999446999999999999
Q ss_pred cCCCCC
Q 024696 250 SKTPVR 255 (264)
Q Consensus 250 a~~~~~ 255 (264)
+.+...
T Consensus 101 a~~~~~ 106 (109)
T 2rs2_A 101 AFPRRA 106 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 987743
No 150
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.74 E-value=9.9e-18 Score=117.76 Aligned_cols=76 Identities=24% Similarity=0.371 Sum_probs=71.1
Q ss_pred CcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecC
Q 024696 78 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 153 (264)
Q Consensus 78 ~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~ 153 (264)
+.+|||+|||+++++++|+++|+.||+|.++.++.+.. .++|||||+|.+.++|.+|++ |+|..+.|++|+|.+++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 79 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAA 79 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecC
Confidence 35899999999999999999999999999999998854 468999999999999999998 99999999999999985
No 151
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.4e-17 Score=119.49 Aligned_cols=77 Identities=16% Similarity=0.283 Sum_probs=71.5
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeC--CeeEEEee
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLG--SLPIRVSP 249 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~--g~~l~v~~ 249 (264)
.+.++|||+|||..+++++|+++|++ ||.|..|.+.++ +|||||+|.+.++|++|++ |||..+. |++|+|.|
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDR-FGSIRTIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHT-TSCEEEEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 35589999999999999999999999 699999999765 5799999999999999999 9999999 99999999
Q ss_pred cCCCC
Q 024696 250 SKTPV 254 (264)
Q Consensus 250 a~~~~ 254 (264)
++++.
T Consensus 90 a~~~~ 94 (97)
T 1why_A 90 AKSGP 94 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 99874
No 152
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-17 Score=123.30 Aligned_cols=83 Identities=17% Similarity=0.116 Sum_probs=74.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCc-eEEEEEe-ccC--CCceeEEEEEECCHHHHHHHHH-hC--CceeCCeeEE
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGE-VQRLRLL-GDY--QHSTRIAFVEFAMAESAIAALN-CS--GAVLGSLPIR 246 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~-V~~v~i~-~~~--~~~~g~afV~f~~~~~A~~Ai~-l~--g~~~~g~~l~ 246 (264)
..++|||+|||..+++++|+++|++ ||. |..+.++ .+. +.++|||||+|.+.++|.+|++ |+ +..+.|+.|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~-~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAK-VTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHH-HSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHH-hcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 4589999999999999999999999 598 9999998 555 4799999999999999999998 96 5999999999
Q ss_pred EeecCCCCCCC
Q 024696 247 VSPSKTPVRPR 257 (264)
Q Consensus 247 v~~a~~~~~~~ 257 (264)
|.|+++...+.
T Consensus 86 V~~a~~~~~~~ 96 (109)
T 2dis_A 86 VDWAEPEIDVD 96 (109)
T ss_dssp EEESCSSCSTT
T ss_pred EEEcCCCCCcC
Confidence 99999886543
No 153
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=5.5e-18 Score=123.77 Aligned_cols=77 Identities=23% Similarity=0.360 Sum_probs=71.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecCCCC
Q 024696 176 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTPV 254 (264)
Q Consensus 176 ~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~~~~ 254 (264)
++|||+|||.++++++|+++|++ ||.|..|.+..+ ++|||||+|.+.++|.+|++ |||..+.|+.|+|+++++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSY-YGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHH-HCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 47999999999999999999999 699999999887 67899999999999999999 99999999999999998876
Q ss_pred CC
Q 024696 255 RP 256 (264)
Q Consensus 255 ~~ 256 (264)
+.
T Consensus 77 ~~ 78 (101)
T 2hvz_A 77 RR 78 (101)
T ss_dssp CS
T ss_pred Cc
Confidence 43
No 154
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=6.2e-18 Score=122.73 Aligned_cols=80 Identities=21% Similarity=0.175 Sum_probs=72.9
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 249 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~ 249 (264)
...++|||+|||..+++++|+++|++ ||.|..+.++.++ ++++|||||+|.+.++|++|++ |||..+.|++|+|++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~-~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYG-YQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTT-SCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-cCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 35589999999999999999999999 6999887777654 6789999999999999999998 999999999999999
Q ss_pred cCCC
Q 024696 250 SKTP 253 (264)
Q Consensus 250 a~~~ 253 (264)
++.+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8765
No 155
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.2e-17 Score=122.25 Aligned_cols=81 Identities=22% Similarity=0.331 Sum_probs=73.4
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
.+...++|||+|||+++|+++|+++|++||.|..+.+..+. .++|||||+|.+.++|.+|++ ||+..+.|++|+|.++
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 96 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR-GGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP 96 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS-SSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEc
Confidence 45567899999999999999999999999999999997654 467999999999999999997 9999999999999998
Q ss_pred CCC
Q 024696 153 KTA 155 (264)
Q Consensus 153 ~~~ 155 (264)
+..
T Consensus 97 ~~~ 99 (109)
T 1x4a_A 97 RSG 99 (109)
T ss_dssp CCC
T ss_pred ccC
Confidence 643
No 156
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.74 E-value=1.8e-17 Score=120.58 Aligned_cols=80 Identities=24% Similarity=0.334 Sum_probs=73.6
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeE--------EEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCC
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVD--------CRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTML 142 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~--------v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~ 142 (264)
.+...++|||+|||+++++++|+++|+.||.|.+ +.++.++. .++|||||+|.+.++|.+|++ |||..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 4556789999999999999999999999999999 99998864 568999999999999999998 999999
Q ss_pred CCcceEEeecC
Q 024696 143 GFYPVRVLPSK 153 (264)
Q Consensus 143 ~g~~l~V~~s~ 153 (264)
.|++|+|.+++
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999873
No 157
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.74 E-value=1.4e-18 Score=124.26 Aligned_cols=81 Identities=22% Similarity=0.312 Sum_probs=69.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 024696 176 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKT 252 (264)
Q Consensus 176 ~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~~ 252 (264)
++|||+|||..+++++|+++|++ ||.|..+.+..++ +.++|||||+|.+.+ |.+|+. |||..++|++|+|++|.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~ 79 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQ-FGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANP 79 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHH-HTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC--
T ss_pred cEEEECCCCCCCCHHHHHHHHHh-cCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCC
Confidence 68999999999999999999999 6999999999876 678999999999999 999999 999999999999999988
Q ss_pred CCCCCC
Q 024696 253 PVRPRA 258 (264)
Q Consensus 253 ~~~~~~ 258 (264)
...+.+
T Consensus 80 ~~~~~~ 85 (90)
T 2ki2_A 80 KKSLEH 85 (90)
T ss_dssp ------
T ss_pred CCCCCC
Confidence 865443
No 158
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.74 E-value=5.4e-18 Score=129.88 Aligned_cols=82 Identities=21% Similarity=0.242 Sum_probs=75.5
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEE--EEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCc----eeCC
Q 024696 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQR--LRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGA----VLGS 242 (264)
Q Consensus 172 ~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~--v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~----~~~g 242 (264)
....++|||+|||+.+|+++|+++|++ ||.|.. |+|++|+ ++++|||||+|.+. +|.+|+. |||. .+.|
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~-~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAP-YAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGG-GCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHH-hCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 456789999999999999999999999 699977 9999987 78999999999999 9999998 9999 9999
Q ss_pred eeEEEeecCCCCC
Q 024696 243 LPIRVSPSKTPVR 255 (264)
Q Consensus 243 ~~l~v~~a~~~~~ 255 (264)
+.|+|+++++..+
T Consensus 98 r~l~V~~a~~~~~ 110 (131)
T 2m2b_A 98 KTINVEFAKGSKR 110 (131)
T ss_dssp CCCCCEECCCSCC
T ss_pred EEEEEEECCCCCC
Confidence 9999999988743
No 159
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.4e-17 Score=122.16 Aligned_cols=80 Identities=18% Similarity=0.312 Sum_probs=74.4
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCceeEEEEEECCHHHHHHHHH-hCCcee--------CC
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVL--------GS 242 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~-l~g~~~--------~g 242 (264)
...++|||+|||..+++++|+++|++ ||.|..+.++.++ +.++|||||+|.+.++|.+|++ |||..+ .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKP-FGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTT-TSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 45689999999999999999999999 6999999999986 6789999999999999999999 999999 68
Q ss_pred eeEEEeecCCC
Q 024696 243 LPIRVSPSKTP 253 (264)
Q Consensus 243 ~~l~v~~a~~~ 253 (264)
++|.|.|++|+
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999999976
No 160
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.73 E-value=2.2e-17 Score=121.56 Aligned_cols=83 Identities=20% Similarity=0.302 Sum_probs=75.3
Q ss_pred ccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCC---CCcc
Q 024696 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTML---GFYP 146 (264)
Q Consensus 73 ~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~---~g~~ 146 (264)
..+...++|||+|||+++++++|+++|+.||.|.+|.++.++. .++|||||+|.+.++|.+|++ |++..+ .|++
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3456788999999999999999999999999999999998864 568999999999999999998 999887 8999
Q ss_pred eEEeecCCC
Q 024696 147 VRVLPSKTA 155 (264)
Q Consensus 147 l~V~~s~~~ 155 (264)
|+|.++...
T Consensus 88 l~v~~a~~~ 96 (106)
T 2dgp_A 88 IQVKPADSE 96 (106)
T ss_dssp CEEEECCCC
T ss_pred EEEEECCcc
Confidence 999998643
No 161
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.73 E-value=9.9e-18 Score=123.45 Aligned_cols=79 Identities=18% Similarity=0.206 Sum_probs=73.2
Q ss_pred CCceEEEeCCCCCC------CHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCe-eE
Q 024696 174 CSRTIYCTNIDKKV------TQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSL-PI 245 (264)
Q Consensus 174 ~~~~l~V~nL~~~~------te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~-~l 245 (264)
..++|||+|||..+ ++++|+++|++ ||.|..|.+++..|+++|||||+|.+.++|.+|+. |||..+.|+ +|
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~-~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSK-FGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGG-GSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhc-CCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 45899999999999 78999999999 69999999986668899999999999999999999 999999998 99
Q ss_pred EEeecCCC
Q 024696 246 RVSPSKTP 253 (264)
Q Consensus 246 ~v~~a~~~ 253 (264)
+|.++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99998754
No 162
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7e-18 Score=121.31 Aligned_cols=79 Identities=24% Similarity=0.278 Sum_probs=69.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCc-eEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCC-ceeCCeeEEEeec
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGE-VQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSG-AVLGSLPIRVSPS 250 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~-V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g-~~~~g~~l~v~~a 250 (264)
..++|||+|||.++++++|+++|++ ||. |..+.+. ++|||||+|.+.++|.+|++ ||| ..+.|++|+|+|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~vv~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGD-RKLPLAGQVLL-----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHH-TTCCCSSCEEE-----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHH-cCCceEEEEEc-----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 4589999999999999999999999 699 6666663 35799999999999999998 999 9999999999999
Q ss_pred CCCCCCCC
Q 024696 251 KTPVRPRA 258 (264)
Q Consensus 251 ~~~~~~~~ 258 (264)
+++..+.+
T Consensus 81 ~~~~~~~~ 88 (93)
T 2cqh_A 81 VSKKLRSS 88 (93)
T ss_dssp CCCCCCCC
T ss_pred cCccccCC
Confidence 98855443
No 163
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=4e-17 Score=121.73 Aligned_cols=82 Identities=27% Similarity=0.330 Sum_probs=74.9
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEee
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 151 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~-~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~ 151 (264)
.....++|||+|||+++++++|+++|+.||.|.++.++.++. .++|||||+|.+.++|.+|++ ||+..+.|++|.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 345678999999999999999999999999999999998864 468999999999999999998 999999999999999
Q ss_pred cCCC
Q 024696 152 SKTA 155 (264)
Q Consensus 152 s~~~ 155 (264)
++..
T Consensus 91 a~~~ 94 (114)
T 2do0_A 91 DERA 94 (114)
T ss_dssp CSCC
T ss_pred cccC
Confidence 8654
No 164
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=131.58 Aligned_cols=79 Identities=22% Similarity=0.242 Sum_probs=73.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCC--ceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEe
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCG--EVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 248 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G--~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~ 248 (264)
..++|||+|||..+++++|+++|++ || .|..|+++.|+ |+++|||||+|.+.++|.+|++ |||..++|+.|+|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~-~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRS-IGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHH-TTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-HCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 4589999999999999999999999 69 99999999885 7899999999999999999999 99999999999999
Q ss_pred ecCCC
Q 024696 249 PSKTP 253 (264)
Q Consensus 249 ~a~~~ 253 (264)
++++.
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 99764
No 165
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.73 E-value=3.3e-17 Score=120.08 Aligned_cols=78 Identities=23% Similarity=0.406 Sum_probs=71.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKT 252 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~~ 252 (264)
..++|||+|||..+++++|+++|++ ||.|..|.+.+ +||||+|.+.++|.+|++ |||..+.|+.|+|.|+++
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~-~G~i~~v~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQ-FGKLERVKKLK------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHH-HSCEEEEEECS------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEEC------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 4589999999999999999999999 69999999964 499999999999999999 999999999999999988
Q ss_pred CCCCCC
Q 024696 253 PVRPRA 258 (264)
Q Consensus 253 ~~~~~~ 258 (264)
+..++.
T Consensus 83 ~~~~~~ 88 (103)
T 2dgu_A 83 PDQKRK 88 (103)
T ss_dssp CCCCCC
T ss_pred Ccccch
Confidence 866543
No 166
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.5e-17 Score=120.40 Aligned_cols=79 Identities=23% Similarity=0.272 Sum_probs=70.3
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hc--CCCCCCcceEEe
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LA--GTMLGFYPVRVL 150 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~--~~~~~g~~l~V~ 150 (264)
.....++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|.+.++|..|++ ++ +..+.|++|+|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 3456789999999999999999999999999999999876 4899999999999999997 64 567999999999
Q ss_pred ecCCCC
Q 024696 151 PSKTAI 156 (264)
Q Consensus 151 ~s~~~~ 156 (264)
+++...
T Consensus 87 ~a~~~~ 92 (101)
T 2cq1_A 87 YSNHKE 92 (101)
T ss_dssp ECSCSS
T ss_pred EcCccc
Confidence 986543
No 167
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.3e-17 Score=121.43 Aligned_cols=80 Identities=23% Similarity=0.305 Sum_probs=73.6
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEee
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 151 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~ 151 (264)
....++|||+|||+++++++|+++|+.||.|.+|.++.+.. .++|||||+|.+.++|.+|++ |+|..+.|++|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 34568899999999999999999999999999999998864 468999999999999999998 999999999999999
Q ss_pred cCC
Q 024696 152 SKT 154 (264)
Q Consensus 152 s~~ 154 (264)
+..
T Consensus 100 a~~ 102 (106)
T 1p27_B 100 CFV 102 (106)
T ss_dssp SEE
T ss_pred ecC
Confidence 854
No 168
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5e-18 Score=124.52 Aligned_cols=81 Identities=23% Similarity=0.391 Sum_probs=75.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
..++|||+|||..+++++|+++|++ ||.|..+.+..++ +.++|||||+|.+.++|.+|++ +||..+.|+.|+|.++
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSE-VGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHT-TSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHh-cCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 3489999999999999999999999 6999999999875 6789999999999999999998 9999999999999999
Q ss_pred CCCCC
Q 024696 251 KTPVR 255 (264)
Q Consensus 251 ~~~~~ 255 (264)
++...
T Consensus 86 ~~~~~ 90 (104)
T 1p1t_A 86 ASEKN 90 (104)
T ss_dssp TCTTH
T ss_pred CCccc
Confidence 88754
No 169
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=120.99 Aligned_cols=81 Identities=20% Similarity=0.306 Sum_probs=74.4
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCee-EEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcc----
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVV-DCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYP---- 146 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~-~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~---- 146 (264)
....++|||+|||+++++++|+++|++||+|. ++.++.++. .++|||||+|.+.++|++|++ ||+..+.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 45678999999999999999999999999999 999999864 568999999999999999998 9999999999
Q ss_pred eEEeecCCC
Q 024696 147 VRVLPSKTA 155 (264)
Q Consensus 147 l~V~~s~~~ 155 (264)
|+|.+++..
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999998643
No 170
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.9e-17 Score=117.48 Aligned_cols=79 Identities=27% Similarity=0.415 Sum_probs=71.6
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHhhhcC--CceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEe
Q 024696 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVC--GEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 248 (264)
Q Consensus 172 ~~~~~~l~V~nL~~~~te~~L~~~F~~~~--G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~ 248 (264)
....++|||+|||..+++++|+++|++ | |.|..+.+. +|||||+|.+.++|.+|++ |||..+.|++|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~g~v~~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNN-IKPGAVERVKKI------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHT-TSTTCEEEEEEC------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHh-cCCcceEEEEEe------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 345689999999999999999999999 9 899999875 4699999999999999999 99999999999999
Q ss_pred ecCCCCCCC
Q 024696 249 PSKTPVRPR 257 (264)
Q Consensus 249 ~a~~~~~~~ 257 (264)
|+++..+.+
T Consensus 85 ~a~~~~~~~ 93 (99)
T 2cpd_A 85 LAKPVDKDS 93 (99)
T ss_dssp CCCCCCCCC
T ss_pred ECCCCCCCC
Confidence 999885433
No 171
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.73 E-value=1.4e-17 Score=120.43 Aligned_cols=77 Identities=32% Similarity=0.457 Sum_probs=72.1
Q ss_pred CcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecCC
Q 024696 78 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 154 (264)
Q Consensus 78 ~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~ 154 (264)
+++|||+|||+++++++|+++|+.||.|.++.+..++. .++|||||+|.+.++|.+|++ ++|..+.|+.|+|.+++.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57899999999999999999999999999999998863 568999999999999999997 999999999999999864
No 172
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1e-17 Score=122.41 Aligned_cols=82 Identities=29% Similarity=0.379 Sum_probs=74.9
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEe
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 150 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~ 150 (264)
.....++|||+|||+++++++|+++|+.||.|.+|.++.++. .++|||||+|.+.++|.+|++ |++..+.|++|+|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345678999999999999999999999999999999998754 468999999999999999997 99999999999999
Q ss_pred ecCCC
Q 024696 151 PSKTA 155 (264)
Q Consensus 151 ~s~~~ 155 (264)
+++..
T Consensus 88 ~a~~~ 92 (102)
T 2cqb_A 88 LAKPM 92 (102)
T ss_dssp ECCCC
T ss_pred eCCCC
Confidence 98643
No 173
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.9e-17 Score=120.47 Aligned_cols=82 Identities=24% Similarity=0.377 Sum_probs=74.9
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhc-CCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCCC-CCCcceEE
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLT-CGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALS-LAGTM-LGFYPVRV 149 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~-~G~I~~v~i~~~~~-~s~G~afV~F~~~~~a~~Ai~-l~~~~-~~g~~l~V 149 (264)
++...++|||+|||+++|+++|+++|+. ||.|.++.++.+.. .++|||||+|.+.++|.+|++ |++.. +.|++|.|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 4556789999999999999999999999 99999999999863 468999999999999999998 99999 99999999
Q ss_pred eecCCC
Q 024696 150 LPSKTA 155 (264)
Q Consensus 150 ~~s~~~ 155 (264)
.++...
T Consensus 85 ~~a~~~ 90 (104)
T 2dhg_A 85 SVAIPK 90 (104)
T ss_dssp CBCCCC
T ss_pred EEccCC
Confidence 998643
No 174
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.6e-17 Score=123.53 Aligned_cols=78 Identities=23% Similarity=0.280 Sum_probs=70.4
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hc--CCCCCCcceEEee
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LA--GTMLGFYPVRVLP 151 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~--~~~~~g~~l~V~~ 151 (264)
....++|||+|||+++|+++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++ ++ +..+.|++|+|.+
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 445789999999999999999999999999999999987 4899999999999999998 77 4689999999999
Q ss_pred cCCCC
Q 024696 152 SKTAI 156 (264)
Q Consensus 152 s~~~~ 156 (264)
++...
T Consensus 104 a~~k~ 108 (119)
T 2ad9_A 104 SNHKE 108 (119)
T ss_dssp CSSSS
T ss_pred ccCCC
Confidence 86543
No 175
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=120.41 Aligned_cols=80 Identities=21% Similarity=0.420 Sum_probs=73.5
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEE-EEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEee
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDC-RICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 151 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v-~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~ 151 (264)
...++|||+|||+++++++|+++|+.||.|..+ .++.++. .++|||||+|.+.++|.+|++ ||+..+.|++|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457899999999999999999999999999999 9998753 568999999999999999998 999999999999999
Q ss_pred cCCC
Q 024696 152 SKTA 155 (264)
Q Consensus 152 s~~~ 155 (264)
+...
T Consensus 83 a~~~ 86 (96)
T 1x5t_A 83 AFKK 86 (96)
T ss_dssp SCCC
T ss_pred eccc
Confidence 8643
No 176
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.1e-18 Score=126.08 Aligned_cols=81 Identities=19% Similarity=0.090 Sum_probs=75.0
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCce-EEEEEeccC-CCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEeec
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEV-QRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPS 250 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V-~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~a 250 (264)
...++|||+|||..+++++|+++|++ ||.| ..|.++.++ ++++|||||+|.+.++|.+|+++|+..+.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~-~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEG-IPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTT-SCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHh-CCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEC
Confidence 35589999999999999999999999 6999 899999887 77999999999999999999988999999999999999
Q ss_pred CCCC
Q 024696 251 KTPV 254 (264)
Q Consensus 251 ~~~~ 254 (264)
++..
T Consensus 92 ~~~~ 95 (114)
T 2cpy_A 92 TLED 95 (114)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7664
No 177
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.73 E-value=4.9e-18 Score=123.99 Aligned_cols=79 Identities=22% Similarity=0.259 Sum_probs=73.0
Q ss_pred CCCCcEEEEcCCCC------cCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCC-
Q 024696 75 EVIRRTVYVSDIDQ------QVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGF- 144 (264)
Q Consensus 75 ~~~~~~v~V~nLp~------~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g- 144 (264)
+...++|||+|||+ ++++++|+++|++||.|.+|.++.++. .++|||||+|.+.++|.+|++ |||..+.|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34568999999999 999999999999999999999998875 468999999999999999998 99999999
Q ss_pred cceEEeecC
Q 024696 145 YPVRVLPSK 153 (264)
Q Consensus 145 ~~l~V~~s~ 153 (264)
++|+|.++.
T Consensus 83 r~l~V~~a~ 91 (100)
T 3ns6_A 83 HRLFLYTMK 91 (100)
T ss_dssp CBCEEEESH
T ss_pred eEEEEEECc
Confidence 999999974
No 178
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=120.64 Aligned_cols=81 Identities=22% Similarity=0.317 Sum_probs=72.5
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 251 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~ 251 (264)
...++|||+|||..+++++|+++|++ ||.|..+ ...++++|||||+|.+.++|.+|++ +||..+.|++|+|.+++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~-~g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFED-ALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCS-EEEECCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhh-CCcEEEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 35689999999999999999999999 6988777 4447789999999999999999999 99999999999999998
Q ss_pred CCCCCC
Q 024696 252 TPVRPR 257 (264)
Q Consensus 252 ~~~~~~ 257 (264)
++.+.+
T Consensus 90 ~~~~~~ 95 (96)
T 1fjc_A 90 EKGGTR 95 (96)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 875543
No 179
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.2e-17 Score=122.44 Aligned_cols=84 Identities=21% Similarity=0.185 Sum_probs=75.7
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecC
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSK 251 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~a~ 251 (264)
...++|||+|||+++|+++|+++|++ ||.+ .|.|+.++ ++++|||||+|.+.++|.+|+++|+..++|+.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSP-LNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCS-CCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHH-cCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 34589999999999999999999999 6955 99999886 789999999999999999999999999999999999998
Q ss_pred CCCCCCC
Q 024696 252 TPVRPRA 258 (264)
Q Consensus 252 ~~~~~~~ 258 (264)
++...+.
T Consensus 91 ~~~~~~~ 97 (102)
T 1wez_A 91 TAGTSGS 97 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 8865543
No 180
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.73 E-value=6.2e-18 Score=116.63 Aligned_cols=73 Identities=18% Similarity=0.265 Sum_probs=69.1
Q ss_pred eEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEeec
Q 024696 177 TIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPS 250 (264)
Q Consensus 177 ~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~a 250 (264)
+|||+|||.++++++|+++|++ ||.|..+.++.++ +.++|||||+|.+.++|.+|+++||..++|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQ-FGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHT-TSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 5899999999999999999999 6999999999875 67999999999999999999999999999999999986
No 181
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.73 E-value=8.2e-18 Score=116.00 Aligned_cols=73 Identities=19% Similarity=0.232 Sum_probs=68.5
Q ss_pred EEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEeec
Q 024696 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 152 (264)
Q Consensus 80 ~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~s 152 (264)
+|||+|||+++++++|+++|++||+|.++.++.++. .++|||||+|.+.++|++|+++++..+.|++|.|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 489999999999999999999999999999998863 5789999999999999999999999999999999875
No 182
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.6e-17 Score=120.96 Aligned_cols=80 Identities=18% Similarity=0.187 Sum_probs=71.0
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCC--ceeCCeeEEEee
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSG--AVLGSLPIRVSP 249 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g--~~~~g~~l~v~~ 249 (264)
.++++|||+|||+.+++++|+++|++ ||.|..|.+.++ +|||||+|.+.++|.+|++ +++ ..+.|++|+|.|
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~-fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEK-FGTICYVMMMPF----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTT-TSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 45689999999999999999999999 699999999875 5799999999999999998 765 459999999999
Q ss_pred cCCCCCCC
Q 024696 250 SKTPVRPR 257 (264)
Q Consensus 250 a~~~~~~~ 257 (264)
+++....+
T Consensus 88 a~~~~~~~ 95 (104)
T 1wex_A 88 STSKRITR 95 (104)
T ss_dssp CSSSSCCC
T ss_pred ccCccccC
Confidence 98875443
No 183
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.73 E-value=3.8e-17 Score=118.60 Aligned_cols=76 Identities=14% Similarity=0.249 Sum_probs=70.4
Q ss_pred ccCCceEEEeCCCC-CCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q 024696 172 EMCSRTIYCTNIDK-KVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 249 (264)
Q Consensus 172 ~~~~~~l~V~nL~~-~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~ 249 (264)
.+.+++|||+|||. .+++++|+++|++ ||.|..+.+. +|||||+|.+.++|.+|++ +||..++|++|+|++
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~-~G~v~~v~i~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSP-YGHIMQINIK------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGG-GSCEEEEEEC------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45679999999998 9999999999999 6999999993 5799999999999999999 999999999999999
Q ss_pred cCCCC
Q 024696 250 SKTPV 254 (264)
Q Consensus 250 a~~~~ 254 (264)
++++.
T Consensus 92 a~~~~ 96 (97)
T 2xnq_A 92 SSSNA 96 (97)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98763
No 184
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.73 E-value=1.8e-17 Score=117.95 Aligned_cols=78 Identities=32% Similarity=0.575 Sum_probs=72.7
Q ss_pred CCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEeecCC
Q 024696 77 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 154 (264)
Q Consensus 77 ~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~--~~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~s~~ 154 (264)
+.++|||+|||+++++++|+++|+.||.|.++.+..+. +.++|||||+|.+.++|.+|+++++..+.|++|+|.+++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 46799999999999999999999999999999999885 3568999999999999999999999999999999999864
No 185
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-17 Score=122.31 Aligned_cols=76 Identities=29% Similarity=0.294 Sum_probs=69.0
Q ss_pred CCCCcEEEEcCCCC-cCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCC--CCCCcceEEe
Q 024696 75 EVIRRTVYVSDIDQ-QVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGT--MLGFYPVRVL 150 (264)
Q Consensus 75 ~~~~~~v~V~nLp~-~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~--~~~g~~l~V~ 150 (264)
....++|||+|||+ ++|+++|+++|++||.|.+|.+++++ |||||+|.+.++|..|++ |++. .+.|++|+|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k----g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI----NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS----SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC----CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 34678999999999 99999999999999999999998765 799999999999999998 8865 4899999999
Q ss_pred ecCC
Q 024696 151 PSKT 154 (264)
Q Consensus 151 ~s~~ 154 (264)
+++.
T Consensus 88 ~a~~ 91 (102)
T 1x4d_A 88 LSQK 91 (102)
T ss_dssp EECC
T ss_pred ECCC
Confidence 9864
No 186
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.73 E-value=8.1e-18 Score=117.92 Aligned_cols=73 Identities=16% Similarity=0.229 Sum_probs=66.8
Q ss_pred CcEEEEcCCCCcC------CHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCc-ceEE
Q 024696 78 RRTVYVSDIDQQV------TEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFY-PVRV 149 (264)
Q Consensus 78 ~~~v~V~nLp~~~------te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~-~l~V 149 (264)
+++|||+|||+.+ ++++|+++|++||+|.++.+.++.+.++|||||+|.+.++|.+|++ |||..+.|+ +|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 3689999999999 7899999999999999999986556788999999999999999998 999999999 8876
Q ss_pred e
Q 024696 150 L 150 (264)
Q Consensus 150 ~ 150 (264)
.
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 187
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.73 E-value=6.6e-18 Score=123.27 Aligned_cols=81 Identities=25% Similarity=0.344 Sum_probs=72.8
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC---CCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEe
Q 024696 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY---QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVS 248 (264)
Q Consensus 172 ~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~---~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~ 248 (264)
....++|||+|||.++++++|+++|++ || |..|.+..+. ++++|||||+|.+.++|.+|+.+||..++|+.|+|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRG-LN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCS-SC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHh-cC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEE
Confidence 345699999999999999999999999 69 9999999874 678999999999999999999999999999999999
Q ss_pred ecCCCC
Q 024696 249 PSKTPV 254 (264)
Q Consensus 249 ~a~~~~ 254 (264)
++++..
T Consensus 94 ~a~~~~ 99 (100)
T 2j76_E 94 VADQAQ 99 (100)
T ss_dssp ECCCSC
T ss_pred eccCCC
Confidence 998863
No 188
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.72 E-value=6.5e-18 Score=137.94 Aligned_cols=139 Identities=17% Similarity=0.245 Sum_probs=98.1
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhhcccccccCCCCCCcccccccc--c--cccccCCCCcEEEEcCCCC
Q 024696 13 EGYVCPLLLILSCFKLLVWLLVWYFLSLIKVLCLFNTAFQKRNGYSQGKRRMNCRT--S--NAQQDEVIRRTVYVSDIDQ 88 (264)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~v~V~nLp~ 88 (264)
+|+| ||-+|++|.+...+...+ ..+..+|................-.+..... . ...+.....++|||+|||+
T Consensus 43 ~g~V-~l~~i~sF~r~k~l~~d~--~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~ 119 (193)
T 2voo_A 43 EGWV-PLEIMIKFNRLNRLTTDF--NVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPT 119 (193)
T ss_dssp TTCE-EHHHHTTSHHHHHHCCCH--HHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCT
T ss_pred CCcE-EeHHHhhhhHHHHhcCCH--HHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCC
Confidence 8999 999999999998755333 2255556554222211111111000100000 0 0001233568999999999
Q ss_pred cCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEeecCC
Q 024696 89 QVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 154 (264)
Q Consensus 89 ~~te~~L~~~F~~~G~I~~v~i~~~~~-~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~s~~ 154 (264)
++|+++|+++|++||+|..|.+.++.. .++|||||+|.+.++|.+|++..+..+.|++|.|.+++.
T Consensus 120 ~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 120 DATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp TCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred cCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 999999999999999999999998764 568999999999999999999555689999999999753
No 189
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=125.97 Aligned_cols=81 Identities=23% Similarity=0.309 Sum_probs=72.6
Q ss_pred cCCceEEEeCCCCCCCHHHHH----HHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEE
Q 024696 173 MCSRTIYCTNIDKKVTQGDIK----LFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRV 247 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~----~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v 247 (264)
.++++|||+|||+.+++++|+ ++|++ ||.|.+|.+.++ ++++|||||+|.+.++|..|++ |||..+.|++|+|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~-~G~I~~v~i~~~-~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASS-QGDILDIVVDLS-DDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHH-HSCEEEEEECCC-CSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhcc-CCCeEEEEeccC-CCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 346899999999999999876 69999 699999988653 6789999999999999999998 9999999999999
Q ss_pred eecCCCCC
Q 024696 248 SPSKTPVR 255 (264)
Q Consensus 248 ~~a~~~~~ 255 (264)
.|++++..
T Consensus 105 ~~a~~~~~ 112 (127)
T 2a3j_A 105 TFSETPQS 112 (127)
T ss_dssp EECCCCCH
T ss_pred EEccCcch
Confidence 99987643
No 190
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.7e-17 Score=118.90 Aligned_cols=83 Identities=20% Similarity=0.273 Sum_probs=72.2
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEe
Q 024696 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 248 (264)
Q Consensus 172 ~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~ 248 (264)
....++|||+|||..+++++|+++|++ |+ .+.++.+. ++++|||||+|.+.++|.+|++ |||..+.|+.|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~-~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDG-SV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTT-CS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcC-Ce---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 345699999999999999999999998 55 45566553 6789999999999999999998 99999999999999
Q ss_pred ecCCCCCCCC
Q 024696 249 PSKTPVRPRA 258 (264)
Q Consensus 249 ~a~~~~~~~~ 258 (264)
|++++..+.+
T Consensus 88 ~a~~~~~~~~ 97 (102)
T 2fc8_A 88 WAKPKGEGGS 97 (102)
T ss_dssp ECCCCCSSSC
T ss_pred EecCCCCCCC
Confidence 9999865443
No 191
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=4.3e-17 Score=120.89 Aligned_cols=82 Identities=23% Similarity=0.329 Sum_probs=74.9
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hc------CCCCCC
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LA------GTMLGF 144 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~------~~~~~g 144 (264)
+....++|||+|||+++++++|+++|+.||.|..|.++.++. .++|||||+|.+.++|.+|++ ++ +..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 445678999999999999999999999999999999998864 468999999999999999998 99 999999
Q ss_pred cceEEeecCCC
Q 024696 145 YPVRVLPSKTA 155 (264)
Q Consensus 145 ~~l~V~~s~~~ 155 (264)
++|+|.++...
T Consensus 91 ~~l~v~~a~~~ 101 (111)
T 1x4h_A 91 RQLKVDLAVTR 101 (111)
T ss_dssp CEEEEECCCCC
T ss_pred EEEEEEECCCC
Confidence 99999998643
No 192
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.72 E-value=8.8e-18 Score=121.15 Aligned_cols=79 Identities=22% Similarity=0.175 Sum_probs=71.0
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 249 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~ 249 (264)
+..++|||+|||..+++++|+++|++ ||.|..+.++.++ ++++|||||+|.+.++|.+|++ |||..+.|++|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYG-YQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTT-SCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34589999999999999999999999 6999888877754 6789999999999999999998 999999999999999
Q ss_pred cCC
Q 024696 250 SKT 252 (264)
Q Consensus 250 a~~ 252 (264)
+++
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 864
No 193
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.3e-17 Score=120.77 Aligned_cols=82 Identities=16% Similarity=0.227 Sum_probs=74.6
Q ss_pred ccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEE
Q 024696 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 149 (264)
Q Consensus 73 ~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V 149 (264)
..+...++|||+|||+++|+++|+++|+.||.|.+|.++.++. .++|||||+|.+.++|++|++ +++ .+.|++|+|
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V 90 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANV 90 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEE
Confidence 3456789999999999999999999999999999999998864 578999999999999999998 887 899999999
Q ss_pred eecCCC
Q 024696 150 LPSKTA 155 (264)
Q Consensus 150 ~~s~~~ 155 (264)
.++...
T Consensus 91 ~~a~~~ 96 (116)
T 2cqd_A 91 NLAYLG 96 (116)
T ss_dssp EESTTT
T ss_pred EEcccC
Confidence 998644
No 194
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.6e-18 Score=120.14 Aligned_cols=77 Identities=16% Similarity=0.224 Sum_probs=71.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
++++|||+|||..+++++|+++|++ ||.|..+.+..++ +.++|||||+|.+.++|.+|++ |||..+.|+.++++++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~-~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQP-YGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTT-TSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 4589999999999999999999999 6999999999875 6789999999999999999999 9999999999998876
Q ss_pred C
Q 024696 251 K 251 (264)
Q Consensus 251 ~ 251 (264)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 195
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.3e-17 Score=120.27 Aligned_cols=80 Identities=26% Similarity=0.390 Sum_probs=73.4
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC---CCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEee
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN---SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLP 151 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~---~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~ 151 (264)
....++|||+|||+++++++|+++|+.|| |.+|.++.++. .++|||||+|.+.++|.+|+++++..+.|++|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEE
Confidence 45678999999999999999999999999 99999998864 468999999999999999999999999999999999
Q ss_pred cCCC
Q 024696 152 SKTA 155 (264)
Q Consensus 152 s~~~ 155 (264)
++..
T Consensus 91 a~~~ 94 (104)
T 1wi8_A 91 ADQA 94 (104)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8643
No 196
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=117.92 Aligned_cols=77 Identities=18% Similarity=0.287 Sum_probs=71.9
Q ss_pred CCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--C-CceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 77 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--S-VLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 77 ~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~-s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
..++|||+|||+++++++|+++|++||.|.++.+..+.. . ++|||||+|.+.++|.+|++ |||..+.|++|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 467899999999999999999999999999999998874 2 68999999999999999998 9999999999999998
Q ss_pred C
Q 024696 153 K 153 (264)
Q Consensus 153 ~ 153 (264)
.
T Consensus 83 ~ 83 (88)
T 4a8x_A 83 L 83 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 197
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.72 E-value=3.2e-17 Score=125.29 Aligned_cols=82 Identities=27% Similarity=0.251 Sum_probs=75.3
Q ss_pred ccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEE
Q 024696 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 149 (264)
Q Consensus 73 ~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V 149 (264)
.++...++|||+|||+++++++|+++|+.||+|..|.++.++. .++|||||+|.+.++|.+|++ ||+..+.|++|+|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456678999999999999999999999999999999998864 568999999999999999998 9999999999999
Q ss_pred eecCC
Q 024696 150 LPSKT 154 (264)
Q Consensus 150 ~~s~~ 154 (264)
.++..
T Consensus 121 ~~a~~ 125 (129)
T 2kxn_B 121 DFSIT 125 (129)
T ss_dssp SCCSS
T ss_pred EEecC
Confidence 99864
No 198
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.72 E-value=7.1e-18 Score=118.21 Aligned_cols=72 Identities=19% Similarity=0.269 Sum_probs=67.0
Q ss_pred ceEEEeCCCCCC------CHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCe-eEEE
Q 024696 176 RTIYCTNIDKKV------TQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSL-PIRV 247 (264)
Q Consensus 176 ~~l~V~nL~~~~------te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~-~l~v 247 (264)
++|||+|||..+ ++++|+++|++ ||.|..+.++++.++++|||||+|.+.++|.+|++ |||..+.|+ +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~-~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSK-FGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHT-TCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhh-cCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 789999999999 67999999999 69999999987668899999999999999999998 999999999 8876
Q ss_pred e
Q 024696 248 S 248 (264)
Q Consensus 248 ~ 248 (264)
+
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 199
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.5e-17 Score=123.76 Aligned_cols=81 Identities=16% Similarity=0.243 Sum_probs=74.1
Q ss_pred CCCCcEEEEcCCCCcCCHHHHH---HHhhcCCCeeEEEEecCCC-----CCceEEEEEecCHHHHHHHHH-hcCCCCCCc
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLA---TLFLTCGQVVDCRICGDPN-----SVLRFAFVEFTDEEGARAALS-LAGTMLGFY 145 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~---~~F~~~G~I~~v~i~~~~~-----~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~ 145 (264)
....++|||+|||+++++++|+ ++|++||+|.++.+..+.. .++|||||+|.+.++|++|++ ||+..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 4457889999999999999999 9999999999999998865 356999999999999999998 999999999
Q ss_pred ceEEeecCCC
Q 024696 146 PVRVLPSKTA 155 (264)
Q Consensus 146 ~l~V~~s~~~ 155 (264)
+|+|.+++..
T Consensus 92 ~l~V~~a~~k 101 (111)
T 2cpi_A 92 TLKASLGTTK 101 (111)
T ss_dssp EEEEESCCCC
T ss_pred EEEEEecccc
Confidence 9999998654
No 200
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.4e-17 Score=120.52 Aligned_cols=80 Identities=16% Similarity=0.267 Sum_probs=70.3
Q ss_pred cCCceEEEeCCCC-CCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 173 MCSRTIYCTNIDK-KVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 173 ~~~~~l~V~nL~~-~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
.+.++|||+|||. .+++++|+++|++ ||.|..+.+. +|||||+|.+.++|.+|++ |||..+.|++|+|.++
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~-~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 80 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSP-YGHIMQINIK------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVS 80 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTT-TCCCCEEEEE------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEc
Confidence 4569999999998 9999999999999 6999999994 5799999999999999999 9999999999999999
Q ss_pred CCCCCCCCC
Q 024696 251 KTPVRPRAP 259 (264)
Q Consensus 251 ~~~~~~~~~ 259 (264)
++...+...
T Consensus 81 ~~~~~~~~~ 89 (96)
T 2kvi_A 81 SSNARPQFD 89 (96)
T ss_dssp ECCCC----
T ss_pred CcCCCCCCC
Confidence 887655443
No 201
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.72 E-value=1.3e-16 Score=120.88 Aligned_cols=83 Identities=22% Similarity=0.249 Sum_probs=75.4
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEee
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 151 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~-~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~ 151 (264)
.....++|||+|||+++++++|+++|+.||.|.+|.+..+.. .++|||||+|.+.++|.+|++ +++..+.|++|+|.+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 345678899999999999999999999999999999998873 468999999999999999998 999999999999999
Q ss_pred cCCCC
Q 024696 152 SKTAI 156 (264)
Q Consensus 152 s~~~~ 156 (264)
+....
T Consensus 111 a~~~~ 115 (124)
T 2kt5_A 111 VASQI 115 (124)
T ss_dssp ECCTT
T ss_pred eCCCC
Confidence 86543
No 202
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=9.7e-17 Score=117.92 Aligned_cols=78 Identities=18% Similarity=0.147 Sum_probs=69.4
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCC--CCCCcceEEee
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGT--MLGFYPVRVLP 151 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~--~~~g~~l~V~~ 151 (264)
....++|||+|||+++++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|++ +++. .+.|++|+|.+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 345689999999999999999999999999999999875 4899999999999999998 8754 48999999999
Q ss_pred cCCCC
Q 024696 152 SKTAI 156 (264)
Q Consensus 152 s~~~~ 156 (264)
++...
T Consensus 88 a~~~~ 92 (104)
T 1wex_A 88 STSKR 92 (104)
T ss_dssp CSSSS
T ss_pred ccCcc
Confidence 86543
No 203
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=5.1e-17 Score=119.02 Aligned_cols=81 Identities=21% Similarity=0.371 Sum_probs=73.8
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEee
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLP 151 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~ 151 (264)
.....++|||+|||+++++++|+++|+.|| |.+|.++.++. .++|||||+|.+.++|.+|++||+..+.|++|+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDI 89 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEE
Confidence 345678999999999999999999999997 99999999874 468999999999999999999999999999999999
Q ss_pred cCCC
Q 024696 152 SKTA 155 (264)
Q Consensus 152 s~~~ 155 (264)
++..
T Consensus 90 a~~~ 93 (103)
T 2dng_A 90 AEGR 93 (103)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 8643
No 204
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.72 E-value=1.5e-17 Score=124.79 Aligned_cols=82 Identities=24% Similarity=0.415 Sum_probs=74.2
Q ss_pred cccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceE
Q 024696 72 QQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVR 148 (264)
Q Consensus 72 ~~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~ 148 (264)
..++...++|||+|||+++++++|+++|+.||.|.++.++.++. .++|||||+|.+.++|.+|++ ||+..+.|++|+
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34456678999999999999999999999999999999998864 568999999999999999998 999999999999
Q ss_pred EeecC
Q 024696 149 VLPSK 153 (264)
Q Consensus 149 V~~s~ 153 (264)
|.+++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99863
No 205
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=122.69 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=72.9
Q ss_pred cCCCCcEEEEcCCCCcC------CHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCc-
Q 024696 74 DEVIRRTVYVSDIDQQV------TEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFY- 145 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~------te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~- 145 (264)
+....++|||+|||+.+ ++++|+++|++||.|.++.+.+..+.++|||||+|.+.++|.+|++ |||..+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 90 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 90 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTC
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCc
Confidence 34457899999999999 7899999999999999999986556788999999999999999998 999999999
Q ss_pred ceEEeecC
Q 024696 146 PVRVLPSK 153 (264)
Q Consensus 146 ~l~V~~s~ 153 (264)
+|+|.++.
T Consensus 91 ~l~V~~a~ 98 (105)
T 2nlw_A 91 TFRVNLFT 98 (105)
T ss_dssp EEEEECSC
T ss_pred eEEEEEcc
Confidence 99999985
No 206
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.72 E-value=2.9e-17 Score=121.09 Aligned_cols=80 Identities=21% Similarity=0.251 Sum_probs=73.8
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEee
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 151 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~-~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~ 151 (264)
.....++|||+|||+.+++++|+++|+.||.|.++.++.+.. .++|||||+|.+.++|.+|++ |++..+.|++|+|.+
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 104 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 445678999999999999999999999999999999998874 468999999999999999998 999999999999999
Q ss_pred cC
Q 024696 152 SK 153 (264)
Q Consensus 152 s~ 153 (264)
++
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 74
No 207
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=4.2e-17 Score=118.21 Aligned_cols=78 Identities=24% Similarity=0.361 Sum_probs=70.2
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 251 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~ 251 (264)
...++|||+|||..+++++|+++|++ ||.|. +.+..+ +++|||||+|.+.++|.+|++ |||..+.|++|+|.+++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~-~G~v~-~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 92 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRE-LGSVP-LRLTWQ--GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALAR 92 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHH-TTCCC-SEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHh-cCCEE-EEEEcC--CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 34689999999999999999999999 69996 666654 567899999999999999998 99999999999999998
Q ss_pred CCC
Q 024696 252 TPV 254 (264)
Q Consensus 252 ~~~ 254 (264)
++.
T Consensus 93 ~~~ 95 (97)
T 2e5j_A 93 QQR 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 873
No 208
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=8.3e-17 Score=114.96 Aligned_cols=75 Identities=24% Similarity=0.415 Sum_probs=69.8
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecC
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 153 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~ 153 (264)
+...++|||+|||+++++++|+++|++||+|.++.+. +|||||+|.+.++|.+|++ +++..+.|++|+|.+++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 4567899999999999999999999999999999998 3799999999999999997 99999999999999986
Q ss_pred CC
Q 024696 154 TA 155 (264)
Q Consensus 154 ~~ 155 (264)
..
T Consensus 79 ~~ 80 (90)
T 2dnq_A 79 NK 80 (90)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 209
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.71 E-value=3e-18 Score=132.46 Aligned_cols=125 Identities=19% Similarity=0.094 Sum_probs=74.4
Q ss_pred eEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecCCCCCCCCCCCCCCCccccccCCceEEEeCCCCCCCHHHHHHHhh
Q 024696 119 RFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVTQGDIKLFFE 197 (264)
Q Consensus 119 G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~te~~L~~~F~ 197 (264)
|+||.+|.-++.+-.++. +... .+|....-... ...........++|||+|||+++|+++|+++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g------------~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~ 68 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSG------------DSEFTVQSTTGHCVHMRGLPYKATENDIYNFFS 68 (139)
T ss_dssp --------------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHC
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCCC------------CcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 678888887777776664 3322 23322211110 011112233458999999999999999999999
Q ss_pred hcCCceEEEEEeccC-CCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecCCCCCCCC
Q 024696 198 SVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKTPVRPRA 258 (264)
Q Consensus 198 ~~~G~V~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~a~~~~~~~~ 258 (264)
+ || |..|.|+.++ ++++|||||+|.+.++|.+|+++|+..++|+.|+|.++.++.....
T Consensus 69 ~-~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~~~~~~~ 128 (139)
T 2hgn_A 69 P-LN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNSTTGASNG 128 (139)
T ss_dssp S-CC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCCSCC---
T ss_pred h-cC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCCCCCCCC
Confidence 9 69 6799999876 7899999999999999999999999999999999999988765443
No 210
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=7.4e-17 Score=118.51 Aligned_cols=81 Identities=25% Similarity=0.231 Sum_probs=74.0
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEE-EEEeccC-CCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEeec
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQR-LRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPS 250 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~-v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~a 250 (264)
....+|||+|||+.+++++|+++|++ ||.|.. |.+..+. ++++|||||+|.+.++|.+|++.|+..++|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSG-LEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTT-CCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEEC
Confidence 34589999999999999999999999 699987 8888875 78999999999999999999988999999999999998
Q ss_pred CCCC
Q 024696 251 KTPV 254 (264)
Q Consensus 251 ~~~~ 254 (264)
.+..
T Consensus 92 ~~~~ 95 (104)
T 1wg5_A 92 SRAE 95 (104)
T ss_dssp CTTT
T ss_pred CHHH
Confidence 7653
No 211
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.71 E-value=1.8e-17 Score=119.94 Aligned_cols=81 Identities=26% Similarity=0.373 Sum_probs=73.5
Q ss_pred cCCceEEEeCCCCCCCHHHHH----HHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEE
Q 024696 173 MCSRTIYCTNIDKKVTQGDIK----LFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRV 247 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~----~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v 247 (264)
.++++|||+|||..+++++|+ ++|++ ||.|..|.+... ++++|||||+|.+.++|.+|++ |||..+.|+.|+|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~-~G~i~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSR-FGQILDILVSRS-LKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGG-GSCEEEEECCHH-HHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-CCCEEEEEEEcC-CCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 356899999999999999999 99999 699999998743 5677899999999999999998 9999999999999
Q ss_pred eecCCCCC
Q 024696 248 SPSKTPVR 255 (264)
Q Consensus 248 ~~a~~~~~ 255 (264)
+|++++..
T Consensus 84 ~~a~~~~~ 91 (97)
T 1nu4_A 84 QYAKTDSD 91 (97)
T ss_dssp EECSSCCT
T ss_pred EEccCCCc
Confidence 99998753
No 212
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.4e-17 Score=120.32 Aligned_cols=76 Identities=17% Similarity=0.218 Sum_probs=70.2
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 251 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~ 251 (264)
...++|||+|||..+++++|+++|++ ||.|.++++.+ ++|||||+|.+.++|.+|++ |||..++|+.|+|.|++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~-~G~i~~~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQN-FGFILDFKHYP----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHT-TSCCSEEEEET----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHh-CCCEEEEEEec----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 34689999999999999999999999 69999999974 45799999999999999998 99999999999999998
Q ss_pred CC
Q 024696 252 TP 253 (264)
Q Consensus 252 ~~ 253 (264)
++
T Consensus 100 ~~ 101 (101)
T 2la4_A 100 ER 101 (101)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 213
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.71 E-value=3.4e-17 Score=121.37 Aligned_cols=80 Identities=20% Similarity=0.247 Sum_probs=73.7
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEee
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 151 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~ 151 (264)
....++|||+|||+++++++|+++|+.||.|.++.++.+.. .++|||||+|.+.++|.+|++ |+|..+.|++|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 44568899999999999999999999999999999998763 568999999999999999998 999999999999999
Q ss_pred cCC
Q 024696 152 SKT 154 (264)
Q Consensus 152 s~~ 154 (264)
+..
T Consensus 103 a~~ 105 (110)
T 1oo0_B 103 CFV 105 (110)
T ss_dssp SEE
T ss_pred ccc
Confidence 854
No 214
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.9e-17 Score=121.12 Aligned_cols=83 Identities=24% Similarity=0.329 Sum_probs=75.2
Q ss_pred ccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCee--------EEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCC
Q 024696 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVV--------DCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTM 141 (264)
Q Consensus 73 ~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~--------~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~ 141 (264)
.+....++|||+|||+++++++|+++|+.||.|. .|.++.++. .++|||||+|.+.++|.+|++ ||+..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3556789999999999999999999999999998 699998753 568999999999999999998 99999
Q ss_pred CCCcceEEeecCCC
Q 024696 142 LGFYPVRVLPSKTA 155 (264)
Q Consensus 142 ~~g~~l~V~~s~~~ 155 (264)
+.|++|+|.+++..
T Consensus 90 ~~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 90 FQGSKLKVSLARKK 103 (113)
T ss_dssp ETTEECEEECSSCC
T ss_pred cCCCEEEEEECCCC
Confidence 99999999998643
No 215
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.2e-17 Score=118.00 Aligned_cols=78 Identities=17% Similarity=0.276 Sum_probs=72.0
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
...++|||+|||+++++++|+++|+.||+|.++.++.++. .++|||||+|.+.++|.+|++ |||..+.|+.+++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 4678999999999999999999999999999999998863 568999999999999999998 9999999999998875
Q ss_pred C
Q 024696 153 K 153 (264)
Q Consensus 153 ~ 153 (264)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 216
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.2e-17 Score=118.02 Aligned_cols=81 Identities=20% Similarity=0.194 Sum_probs=72.8
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeE-EEEecCC-CCCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEee
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVD-CRICGDP-NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLP 151 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~-v~i~~~~-~~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~ 151 (264)
+....++|||+|||+++|+++|+++|++||.|.+ |.++.+. +.++|||||+|.+.++|.+|++.++..++|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFK 90 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEE
Confidence 3456789999999999999999999999999987 8888774 3578999999999999999998899999999999999
Q ss_pred cCC
Q 024696 152 SKT 154 (264)
Q Consensus 152 s~~ 154 (264)
+..
T Consensus 91 ~~~ 93 (104)
T 1wg5_A 91 SSR 93 (104)
T ss_dssp ECT
T ss_pred CCH
Confidence 753
No 217
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.2e-17 Score=120.15 Aligned_cols=81 Identities=22% Similarity=0.219 Sum_probs=72.7
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEeec
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 152 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~-~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~s 152 (264)
.+...++|||+|||+++|+++|+++|++||.+ +|.++.++. .++|||||+|.+.++|++|+++|+..+.|+.|.|.++
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLN 89 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 35567899999999999999999999999955 899998874 5689999999999999999999999999999999997
Q ss_pred CCC
Q 024696 153 KTA 155 (264)
Q Consensus 153 ~~~ 155 (264)
...
T Consensus 90 ~~~ 92 (102)
T 1wez_A 90 STA 92 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 218
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.5e-17 Score=121.97 Aligned_cols=78 Identities=32% Similarity=0.445 Sum_probs=72.5
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
...++|||+|||+++++++|+++|+.||.|..+.++.++. .++|||||+|.+.++|.+|++ ++|..+.|++|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 4568899999999999999999999999999999998863 468999999999999999998 9999999999999998
Q ss_pred C
Q 024696 153 K 153 (264)
Q Consensus 153 ~ 153 (264)
.
T Consensus 86 ~ 86 (104)
T 1p1t_A 86 A 86 (104)
T ss_dssp T
T ss_pred C
Confidence 5
No 219
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.2e-17 Score=115.10 Aligned_cols=76 Identities=18% Similarity=0.307 Sum_probs=70.2
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-h-cCCCCCCcceEEee
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-L-AGTMLGFYPVRVLP 151 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l-~~~~~~g~~l~V~~ 151 (264)
.+...++|||+|||+++++++|+++|++||.|.++.+.++ +|||||+|.+.++|.+|++ | ++..+.|++|+|.+
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 4556789999999999999999999999999999999975 4799999999999999998 8 99999999999998
Q ss_pred cC
Q 024696 152 SK 153 (264)
Q Consensus 152 s~ 153 (264)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 220
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=8.8e-17 Score=116.90 Aligned_cols=78 Identities=15% Similarity=0.232 Sum_probs=72.1
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 251 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~ 251 (264)
...++|||+|||..+++++|+++|++ ||.|..|.+.++ +|||||+|.+.++|.+|++ |||..+.|++|+|.|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~-~G~i~~v~~~~~----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEK-YGKAGEVFIHKD----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTST-TCCCSEEEEETT----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhh-cCCeEEEEEecC----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 45689999999999999999999999 699999999865 4699999999999999998 99999999999999998
Q ss_pred CCCC
Q 024696 252 TPVR 255 (264)
Q Consensus 252 ~~~~ 255 (264)
++..
T Consensus 88 ~~~~ 91 (99)
T 2cpj_A 88 HSAS 91 (99)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 8754
No 221
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.71 E-value=4.7e-17 Score=121.59 Aligned_cols=79 Identities=19% Similarity=0.249 Sum_probs=73.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKT 252 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~~ 252 (264)
.+++|||+|||..+++++|+++|++ ||.|..|.++.+ +.++|||||+|.+.++|.+|++ |||..+.|+.|+|.|+++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGK-YGPIRQIRVGNT-PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEECS-TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEeeC-CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 4589999999999999999999999 699999999876 4568999999999999999999 999999999999999987
Q ss_pred CC
Q 024696 253 PV 254 (264)
Q Consensus 253 ~~ 254 (264)
+.
T Consensus 85 ~~ 86 (115)
T 3lqv_A 85 NR 86 (115)
T ss_dssp HH
T ss_pred Ch
Confidence 53
No 222
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=8.3e-17 Score=116.63 Aligned_cols=78 Identities=26% Similarity=0.366 Sum_probs=69.3
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
.....++|||+|||+++++++|+++|+.||.|. +.++.+ .++|||||+|.+.++|.+|++ ||+..+.|++|+|.++
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ--GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC--CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 345678999999999999999999999999997 666654 456999999999999999997 9999999999999998
Q ss_pred CC
Q 024696 153 KT 154 (264)
Q Consensus 153 ~~ 154 (264)
+.
T Consensus 92 ~~ 93 (97)
T 2e5j_A 92 RQ 93 (97)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 223
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.71 E-value=4.2e-17 Score=120.90 Aligned_cols=83 Identities=22% Similarity=0.313 Sum_probs=70.3
Q ss_pred cccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhcCCCCCCcceEE
Q 024696 72 QQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRV 149 (264)
Q Consensus 72 ~~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V 149 (264)
...+...++|||+|||+++++++|+++|+.||.|.+|.++.+.. .++|||||+|.+.++|.+|++..+..+.|+.|.|
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V 98 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDP 98 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEE
Confidence 33456778999999999999999999999999999999999864 5789999999999999999994468899999999
Q ss_pred eecCC
Q 024696 150 LPSKT 154 (264)
Q Consensus 150 ~~s~~ 154 (264)
.++..
T Consensus 99 ~~a~~ 103 (109)
T 2rs2_A 99 KVAFP 103 (109)
T ss_dssp EECCC
T ss_pred EEccC
Confidence 99853
No 224
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.9e-17 Score=123.55 Aligned_cols=80 Identities=30% Similarity=0.435 Sum_probs=73.9
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEee
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLP 151 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~ 151 (264)
++...++|||+|||+++++++|+++|+.||.|..|.++.++. .++|||||+|.+.++|.+|+++|+..+.|+.|.|.+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~ 100 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQA 100 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEe
Confidence 345568999999999999999999999999999999998875 468999999999999999999999999999999999
Q ss_pred cC
Q 024696 152 SK 153 (264)
Q Consensus 152 s~ 153 (264)
++
T Consensus 101 a~ 102 (114)
T 2cq4_A 101 SQ 102 (114)
T ss_dssp HH
T ss_pred cC
Confidence 75
No 225
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=7.2e-17 Score=117.38 Aligned_cols=78 Identities=23% Similarity=0.273 Sum_probs=71.7
Q ss_pred ccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEee
Q 024696 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 151 (264)
Q Consensus 73 ~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~ 151 (264)
......++|||+|||+++++++|+++|++||+|..+.+.++ +|||||+|.+.++|.+|++ |++..+.|++|+|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 34556789999999999999999999999999999999866 3799999999999999997 999999999999999
Q ss_pred cCC
Q 024696 152 SKT 154 (264)
Q Consensus 152 s~~ 154 (264)
++.
T Consensus 86 a~~ 88 (99)
T 2cpj_A 86 ACH 88 (99)
T ss_dssp SSC
T ss_pred cCC
Confidence 864
No 226
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-16 Score=116.96 Aligned_cols=83 Identities=20% Similarity=0.215 Sum_probs=73.9
Q ss_pred cccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhcCCCCCCcceEE
Q 024696 72 QQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRV 149 (264)
Q Consensus 72 ~~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V 149 (264)
.......++|||+|||+++++++|+++|+.||.|..|.++.++. .++|||||+|.+.++|.+|++ +++.+.|++|.|
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v 87 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDC 87 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEE
Confidence 34456678999999999999999999999999999999999864 568999999999999999998 567899999999
Q ss_pred eecCCC
Q 024696 150 LPSKTA 155 (264)
Q Consensus 150 ~~s~~~ 155 (264)
.++...
T Consensus 88 ~~a~~~ 93 (103)
T 2cqg_A 88 KLPNSK 93 (103)
T ss_dssp ECCCTT
T ss_pred EecCCC
Confidence 998643
No 227
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=3.6e-17 Score=120.24 Aligned_cols=83 Identities=25% Similarity=0.353 Sum_probs=75.4
Q ss_pred ccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEe
Q 024696 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVL 150 (264)
Q Consensus 73 ~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~ 150 (264)
.++...++|||+|||+++++++|+++|+.||+|.+|.++.++. .++|||||+|.+.++|.+|++.++..+.|++|.|.
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPK 90 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEE
Confidence 3466789999999999999999999999999999999999864 56899999999999999999889999999999999
Q ss_pred ecCCC
Q 024696 151 PSKTA 155 (264)
Q Consensus 151 ~s~~~ 155 (264)
++...
T Consensus 91 ~a~~~ 95 (105)
T 2dh8_A 91 PCTPR 95 (105)
T ss_dssp CSCCS
T ss_pred EccCC
Confidence 98643
No 228
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=4.7e-17 Score=120.64 Aligned_cols=76 Identities=18% Similarity=0.280 Sum_probs=71.4
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecCC
Q 024696 175 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKT 252 (264)
Q Consensus 175 ~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~a~~ 252 (264)
..+|||+|||+++++++|+++|++ | .|..|.|+.++ |+++|||||+|.+.++|.+|+++|+..++|+.|.|..+.+
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~-~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHG-L-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTT-S-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhcc-C-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCc
Confidence 479999999999999999999999 7 89999999876 7899999999999999999999999999999999988864
No 229
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-16 Score=123.36 Aligned_cols=78 Identities=27% Similarity=0.432 Sum_probs=72.3
Q ss_pred ccCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEe
Q 024696 172 EMCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 248 (264)
Q Consensus 172 ~~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~ 248 (264)
....++|||+|||..+++++|+++|++ ||.|..+.++.++ ++++|||||+|.+.++|.+|++ |||..+.|++|+|+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIP-FGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGG-GSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHh-cCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 446799999999999999999999999 6999999999875 6799999999999999999998 99999999999999
Q ss_pred ec
Q 024696 249 PS 250 (264)
Q Consensus 249 ~a 250 (264)
||
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 230
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-16 Score=115.70 Aligned_cols=76 Identities=21% Similarity=0.264 Sum_probs=70.3
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCC--CcceEEee
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLG--FYPVRVLP 151 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~--g~~l~V~~ 151 (264)
....++|||+|||+++++++|+++|++||.|.++.+..+ +|||||+|.+.++|.+|++ ||+..+. |++|+|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 445689999999999999999999999999999999876 4899999999999999998 9999999 99999999
Q ss_pred cCC
Q 024696 152 SKT 154 (264)
Q Consensus 152 s~~ 154 (264)
++.
T Consensus 90 a~~ 92 (97)
T 1why_A 90 AKS 92 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 864
No 231
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1e-16 Score=113.04 Aligned_cols=74 Identities=19% Similarity=0.371 Sum_probs=69.0
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-h-CCceeCCeeEEEeec
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-C-SGAVLGSLPIRVSPS 250 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l-~g~~~~g~~l~v~~a 250 (264)
...++|||+|||..+++++|+++|++ ||.|..+.+.++ +|||||+|.+.++|.+|++ | +|..+.|++|+|+|+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~-~G~i~~~~~~~~----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQ-FGEIRTITVVQR----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHT-TSCEEEEEEEGG----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHh-CCCEeEEEEECC----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 34589999999999999999999999 699999999875 5799999999999999998 8 999999999999998
Q ss_pred C
Q 024696 251 K 251 (264)
Q Consensus 251 ~ 251 (264)
+
T Consensus 85 k 85 (85)
T 2ytc_A 85 R 85 (85)
T ss_dssp C
T ss_pred C
Confidence 6
No 232
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=7.8e-17 Score=115.29 Aligned_cols=80 Identities=23% Similarity=0.319 Sum_probs=73.3
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEeec
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 152 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~-~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~s 152 (264)
.+...++|||+|||+++++++|+++|+.| .|.++.++.+.. .++|||||+|.+.++|.+|+++++..+.|++|.|.++
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEEC
Confidence 34567899999999999999999999999 999999998843 5689999999999999999999999999999999998
Q ss_pred CC
Q 024696 153 KT 154 (264)
Q Consensus 153 ~~ 154 (264)
+.
T Consensus 85 ~~ 86 (91)
T 2dgw_A 85 KS 86 (91)
T ss_dssp SS
T ss_pred Cc
Confidence 53
No 233
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.70 E-value=3.2e-17 Score=123.29 Aligned_cols=79 Identities=18% Similarity=0.207 Sum_probs=73.5
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCc---eEEEEEeccC-CCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEee
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGE---VQRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSP 249 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~---V~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~ 249 (264)
..++|||+|||+++|+++|+++|++ ||. |..|+++.++ ++++|||||+|.+.++|.+|+++||..++|+.|+|.+
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~ 94 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSD-CTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFK 94 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTT-SCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHH-cCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEE
Confidence 4589999999999999999999999 698 8999999876 7899999999999999999999999999999999999
Q ss_pred cCCC
Q 024696 250 SKTP 253 (264)
Q Consensus 250 a~~~ 253 (264)
+++.
T Consensus 95 a~~~ 98 (118)
T 2db1_A 95 SHRT 98 (118)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8654
No 234
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.70 E-value=7.8e-17 Score=122.32 Aligned_cols=82 Identities=22% Similarity=0.277 Sum_probs=74.7
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEee
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 151 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~ 151 (264)
....++|||+|||+++|+++|+++|+.||.|..|.++.+.. .++|||||+|.+.++|.+|++ ||+..+.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 44578999999999999999999999999999999998853 568999999999999999998 999999999999999
Q ss_pred cCCCC
Q 024696 152 SKTAI 156 (264)
Q Consensus 152 s~~~~ 156 (264)
+....
T Consensus 99 a~~~~ 103 (126)
T 3ex7_B 99 CFVRG 103 (126)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 86543
No 235
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.70 E-value=3.1e-17 Score=123.37 Aligned_cols=80 Identities=18% Similarity=0.197 Sum_probs=73.6
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCC---eeEEEEecCCC-CCceEEEEEecCHHHHHHHHHhcCCCCCCcceEE
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQ---VVDCRICGDPN-SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRV 149 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~---I~~v~i~~~~~-~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V 149 (264)
.....++|||+|||+++|+++|+++|+.||. |..|.++.++. .++|||||+|.+.++|++|+++++..++|+.|+|
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V 92 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEV 92 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 3456789999999999999999999999999 89999998764 5789999999999999999999999999999999
Q ss_pred eecC
Q 024696 150 LPSK 153 (264)
Q Consensus 150 ~~s~ 153 (264)
.++.
T Consensus 93 ~~a~ 96 (118)
T 2db1_A 93 FKSH 96 (118)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9974
No 236
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2e-17 Score=114.48 Aligned_cols=73 Identities=21% Similarity=0.279 Sum_probs=68.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 176 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 176 ~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
++|||+|||.++++++|+++|++ ||.|..+.+..++ +.++|||||+|.+.++|.+|++ ++ ..++|++|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~-~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQ-FGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTT-TSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999999999 6999999999875 6789999999999999999999 88 9999999999986
No 237
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.70 E-value=2.7e-17 Score=122.27 Aligned_cols=77 Identities=14% Similarity=0.065 Sum_probs=70.1
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCC-CeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCG-QVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G-~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
+....+|||+|||+++++++|+++|++|| +|..+.+..+ .++|||||+|.+.++|++|++ |||..+.|++|+|.++
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~--~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR--DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC--SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC--CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 44567899999999999999999999999 8999988643 356999999999999999998 9999999999999998
Q ss_pred C
Q 024696 153 K 153 (264)
Q Consensus 153 ~ 153 (264)
+
T Consensus 103 ~ 103 (111)
T 2jvr_A 103 D 103 (111)
T ss_dssp C
T ss_pred C
Confidence 5
No 238
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.70 E-value=2.2e-17 Score=120.46 Aligned_cols=79 Identities=25% Similarity=0.383 Sum_probs=70.2
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCC---CCCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEe
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP---NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVL 150 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~---~~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~ 150 (264)
.....++|||+|||+++++++|+++|+.|| |.++.++.++ +.++|||||+|.+.++|.+|+++++..+.|+.|+|.
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVD 93 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEE
Confidence 455678999999999999999999999999 9999999876 357899999999999999999999999999999999
Q ss_pred ecC
Q 024696 151 PSK 153 (264)
Q Consensus 151 ~s~ 153 (264)
+++
T Consensus 94 ~a~ 96 (100)
T 2j76_E 94 VAD 96 (100)
T ss_dssp ECC
T ss_pred ecc
Confidence 985
No 239
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=1.5e-17 Score=121.34 Aligned_cols=81 Identities=15% Similarity=0.183 Sum_probs=72.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecC
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSK 251 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~a~ 251 (264)
..++|||+|||..+++++|+++|++ ||.|.. .++.+. +.++|||||+|.+.++|.+|++|||..+.|+.|+|.+++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISE-LFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHH-HHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-hCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcC
Confidence 4589999999999999999999999 698877 455543 678999999999999999999999999999999999998
Q ss_pred CCCCC
Q 024696 252 TPVRP 256 (264)
Q Consensus 252 ~~~~~ 256 (264)
++...
T Consensus 94 ~~~~~ 98 (101)
T 1fj7_A 94 GRDGT 98 (101)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 87543
No 240
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.70 E-value=6.7e-17 Score=120.96 Aligned_cols=76 Identities=18% Similarity=0.197 Sum_probs=66.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCee-----EEE
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLP-----IRV 247 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~-----l~v 247 (264)
...+|||+|||.++++++|+++|++ ||.|..|.+..+ |||||+|.+.++|.+|++ |||..+.|+. |+|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v 88 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMRE-AGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 88 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGG-GSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEe
Confidence 3489999999999999999999999 699999999877 799999999999999999 9999999998 888
Q ss_pred eecCCCCC
Q 024696 248 SPSKTPVR 255 (264)
Q Consensus 248 ~~a~~~~~ 255 (264)
..+++...
T Consensus 89 ~~~~~~~~ 96 (115)
T 3beg_B 89 KVDGPRSP 96 (115)
T ss_dssp EECC----
T ss_pred ccCCCCCC
Confidence 88877644
No 241
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.70 E-value=5.4e-17 Score=128.02 Aligned_cols=78 Identities=26% Similarity=0.333 Sum_probs=71.1
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhcCC--CeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEe
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLTCG--QVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 150 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~~G--~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~ 150 (264)
...++|||+|||+++|+++|+++|+.|| .|.+|.++.|+. .++|||||+|.+.++|.+|++ |||..+.|++|.|.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 999999998864 568999999999999999998 99999999999999
Q ss_pred ecC
Q 024696 151 PSK 153 (264)
Q Consensus 151 ~s~ 153 (264)
++.
T Consensus 133 ~a~ 135 (156)
T 3n9u_C 133 PAT 135 (156)
T ss_dssp ECC
T ss_pred EcC
Confidence 974
No 242
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.70 E-value=1.6e-16 Score=122.64 Aligned_cols=84 Identities=24% Similarity=0.336 Sum_probs=76.4
Q ss_pred cccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceE
Q 024696 72 QQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVR 148 (264)
Q Consensus 72 ~~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~ 148 (264)
..++...++|||+|||+++++++|+++|+.||+|.+|.++.++. .++|||||+|.+.++|.+|++ ||+..+.|++|+
T Consensus 36 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 36 NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp SCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 34456678999999999999999999999999999999998865 468999999999999999998 999999999999
Q ss_pred EeecCCC
Q 024696 149 VLPSKTA 155 (264)
Q Consensus 149 V~~s~~~ 155 (264)
|.+++..
T Consensus 116 v~~a~~~ 122 (139)
T 1u6f_A 116 VALAASG 122 (139)
T ss_dssp EEESSCC
T ss_pred EEECCCC
Confidence 9998654
No 243
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.70 E-value=2.3e-17 Score=124.92 Aligned_cols=80 Identities=29% Similarity=0.541 Sum_probs=73.9
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEeec
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 152 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~--~~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~s 152 (264)
+...++|||+|||+++|+++|+++|+.||.|.+|.++.++ +.++|||||+|.+.++|.+|+++++..+.|+.|+|.++
T Consensus 33 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 112 (124)
T 2jwn_A 33 EIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPK 112 (124)
T ss_dssp HHHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEES
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEEC
Confidence 4457899999999999999999999999999999999875 35789999999999999999999999999999999998
Q ss_pred CC
Q 024696 153 KT 154 (264)
Q Consensus 153 ~~ 154 (264)
+.
T Consensus 113 ~~ 114 (124)
T 2jwn_A 113 RT 114 (124)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 244
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.5e-17 Score=122.30 Aligned_cols=81 Identities=17% Similarity=0.104 Sum_probs=74.0
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCe-eEEEEecCCC-CCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEee
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQV-VDCRICGDPN-SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLP 151 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I-~~v~i~~~~~-~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~ 151 (264)
.+...++|||+|||+++|+++|+++|+.||.| ..|.++.++. .++|||||+|.+.++|.+|+++++..+.|++|.|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHV 90 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEE
Confidence 35567899999999999999999999999999 8899998873 478999999999999999998899999999999999
Q ss_pred cCC
Q 024696 152 SKT 154 (264)
Q Consensus 152 s~~ 154 (264)
+..
T Consensus 91 a~~ 93 (114)
T 2cpy_A 91 VTL 93 (114)
T ss_dssp ECH
T ss_pred CCH
Confidence 854
No 245
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.6e-16 Score=117.49 Aligned_cols=80 Identities=18% Similarity=0.173 Sum_probs=72.1
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhcCCC-eeEEEEe-cCCC--CCceEEEEEecCHHHHHHHHH-hc--CCCCCCcceE
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLTCGQ-VVDCRIC-GDPN--SVLRFAFVEFTDEEGARAALS-LA--GTMLGFYPVR 148 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~~G~-I~~v~i~-~~~~--~s~G~afV~F~~~~~a~~Ai~-l~--~~~~~g~~l~ 148 (264)
...++|||+|||+++++++|+++|+.||. |.++.++ .+.. .++|||||+|.+.++|.+|++ |+ +..+.|++|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999998 5654 578999999999999999998 86 5889999999
Q ss_pred EeecCCC
Q 024696 149 VLPSKTA 155 (264)
Q Consensus 149 V~~s~~~ 155 (264)
|.+++..
T Consensus 86 V~~a~~~ 92 (109)
T 2dis_A 86 VDWAEPE 92 (109)
T ss_dssp EEESCSS
T ss_pred EEEcCCC
Confidence 9998654
No 246
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.7e-17 Score=113.84 Aligned_cols=73 Identities=25% Similarity=0.393 Sum_probs=68.0
Q ss_pred cEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 79 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 79 ~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
++|||+|||+++++++|+++|++||+|.++.+..++. .++|||||+|.+.++|.+|++ ++ ..+.|++|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 4799999999999999999999999999999998864 568999999999999999998 77 8999999999986
No 247
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=118.49 Aligned_cols=78 Identities=24% Similarity=0.379 Sum_probs=72.3
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
.+...++|||+|||+++++++|+++|+.||.|..|.+..+ +|||||+|.+.++|.+|++ |++..+.|++|+|.++
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 4556789999999999999999999999999999999987 3899999999999999997 9999999999999998
Q ss_pred CCC
Q 024696 153 KTA 155 (264)
Q Consensus 153 ~~~ 155 (264)
+..
T Consensus 97 ~~~ 99 (109)
T 1x4g_A 97 KES 99 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 644
No 248
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.69 E-value=1.6e-17 Score=114.52 Aligned_cols=73 Identities=16% Similarity=0.294 Sum_probs=68.7
Q ss_pred eEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEeec
Q 024696 177 TIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPS 250 (264)
Q Consensus 177 ~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~a 250 (264)
+|||+|||.++++++|+++|++ ||.|..+.++.++ +.++|||||+|.+.++|.+|+++++..+.|+.|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGG-FGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHH-HSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 5899999999999999999999 6999999999875 67899999999999999999998999999999999885
No 249
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=4.5e-17 Score=118.15 Aligned_cols=79 Identities=15% Similarity=0.143 Sum_probs=71.4
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEee
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 151 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~ 151 (264)
....++|||+|||+++++++|+++|+.||.|..+.++.++. .++|||||+|.+.++|++|++ ||+..+.|++|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 44568899999999999999999999999998777776654 468999999999999999997 999999999999999
Q ss_pred cC
Q 024696 152 SK 153 (264)
Q Consensus 152 s~ 153 (264)
+.
T Consensus 92 a~ 93 (98)
T 2cqp_A 92 GS 93 (98)
T ss_dssp SS
T ss_pred cC
Confidence 85
No 250
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.69 E-value=6.5e-17 Score=124.52 Aligned_cols=84 Identities=25% Similarity=0.333 Sum_probs=76.0
Q ss_pred cccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceE
Q 024696 72 QQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVR 148 (264)
Q Consensus 72 ~~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~ 148 (264)
..+....++|||+|||+++|+++|+++|+.||.|..|.++.++. .++|||||+|.+.++|.+|++ |++..+.|++|+
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34455678999999999999999999999999999999998763 578999999999999999998 999999999999
Q ss_pred EeecCCC
Q 024696 149 VLPSKTA 155 (264)
Q Consensus 149 V~~s~~~ 155 (264)
|.+++..
T Consensus 121 V~~a~~~ 127 (135)
T 2lea_A 121 VQMARYG 127 (135)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9998643
No 251
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.69 E-value=3.4e-17 Score=126.11 Aligned_cols=79 Identities=16% Similarity=0.193 Sum_probs=73.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCc---eEEEEEeccC-CCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEee
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGE---VQRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSP 249 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~---V~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~ 249 (264)
..++|||+|||+++|+++|+++|++ ||. |..|.++.++ ++++|||||+|.+.++|.+|+++||..++|+.|+|.+
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~-~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~~ 121 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSD-CTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVFK 121 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTT-CCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-hCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEEE
Confidence 4589999999999999999999999 699 8999999876 7899999999999999999999999999999999999
Q ss_pred cCCC
Q 024696 250 SKTP 253 (264)
Q Consensus 250 a~~~ 253 (264)
+++.
T Consensus 122 a~~~ 125 (136)
T 2hgl_A 122 SHRT 125 (136)
T ss_dssp CCHH
T ss_pred CChH
Confidence 8654
No 252
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.69 E-value=4e-17 Score=125.70 Aligned_cols=80 Identities=16% Similarity=0.179 Sum_probs=73.6
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCC---eeEEEEecCCC-CCceEEEEEecCHHHHHHHHHhcCCCCCCcceEE
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQ---VVDCRICGDPN-SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRV 149 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~---I~~v~i~~~~~-~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V 149 (264)
+....++|||+|||+++|+++|+++|++||. |.+|.++.++. .++|||||+|.+.++|++|+++|+..++|++|.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V 119 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEV 119 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEE
Confidence 4456789999999999999999999999999 88999998764 6789999999999999999999999999999999
Q ss_pred eecC
Q 024696 150 LPSK 153 (264)
Q Consensus 150 ~~s~ 153 (264)
.++.
T Consensus 120 ~~a~ 123 (136)
T 2hgl_A 120 FKSH 123 (136)
T ss_dssp EECC
T ss_pred EECC
Confidence 9974
No 253
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.1e-16 Score=116.93 Aligned_cols=81 Identities=22% Similarity=0.361 Sum_probs=72.9
Q ss_pred ccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCCCC--------
Q 024696 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALS-LAGTML-------- 142 (264)
Q Consensus 73 ~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~-~s~G~afV~F~~~~~a~~Ai~-l~~~~~-------- 142 (264)
..+...++|||+|||+++++++|+++|+.||.|..+.++.+.. .++|||||+|.+.++|.+|++ |||..+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 3455678999999999999999999999999999999999863 468999999999999999998 999999
Q ss_pred CCcceEEeecC
Q 024696 143 GFYPVRVLPSK 153 (264)
Q Consensus 143 ~g~~l~V~~s~ 153 (264)
.+++|.|.+++
T Consensus 100 ~~~~l~v~~a~ 110 (114)
T 1x5o_A 100 PTEPLLCKFSG 110 (114)
T ss_dssp CSSCBEEEECC
T ss_pred CCCceeEEccC
Confidence 57789998875
No 254
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=2.6e-16 Score=116.39 Aligned_cols=76 Identities=21% Similarity=0.182 Sum_probs=70.8
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCC-----cceE
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGF-----YPVR 148 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g-----~~l~ 148 (264)
....++|||+|||+++++++|+++|++||+|..+.++.+ |||||+|.+.++|++|++ ||+..+.| ++|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 345789999999999999999999999999999999987 799999999999999998 99999999 9999
Q ss_pred EeecCCC
Q 024696 149 VLPSKTA 155 (264)
Q Consensus 149 V~~s~~~ 155 (264)
|.+++..
T Consensus 87 V~~a~~~ 93 (108)
T 1x4c_A 87 VKVDGPR 93 (108)
T ss_dssp EEESSCC
T ss_pred EEeCCCC
Confidence 9998653
No 255
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=121.68 Aligned_cols=78 Identities=21% Similarity=0.287 Sum_probs=69.7
Q ss_pred CCCCcEEEEcCCCCcCCHHHHH----HHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEE
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLA----TLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 149 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~----~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V 149 (264)
....++|||+|||+.+++++|+ ++|++||.|.+|.+..+ +.++|||||+|.+.++|..|++ |||..+.|++|+|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~-~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS-DDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC-CSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC-CCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 3456889999999999999876 79999999999888643 4578999999999999999998 9999999999999
Q ss_pred eecC
Q 024696 150 LPSK 153 (264)
Q Consensus 150 ~~s~ 153 (264)
.+++
T Consensus 105 ~~a~ 108 (127)
T 2a3j_A 105 TFSE 108 (127)
T ss_dssp EECC
T ss_pred EEcc
Confidence 9985
No 256
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.69 E-value=3.3e-17 Score=121.01 Aligned_cols=80 Identities=15% Similarity=0.103 Sum_probs=73.6
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCC---eeEEEEecCCC-CCceEEEEEecCHHHHHHHHHhcCCCCCCcceEE
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQ---VVDCRICGDPN-SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRV 149 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~---I~~v~i~~~~~-~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V 149 (264)
+....++|||+|||+++|+++|+++|+.||. |..|.++.++. .++|||||+|.+.++|.+|+++++..++|+.|.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEV 86 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEE
Confidence 4567889999999999999999999999888 89999998764 6789999999999999999999999999999999
Q ss_pred eecC
Q 024696 150 LPSK 153 (264)
Q Consensus 150 ~~s~ 153 (264)
.++.
T Consensus 87 ~~a~ 90 (107)
T 2lmi_A 87 YEIN 90 (107)
T ss_dssp EECC
T ss_pred EECC
Confidence 9974
No 257
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=6.9e-17 Score=117.86 Aligned_cols=75 Identities=23% Similarity=0.251 Sum_probs=69.3
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecC
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 153 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~ 153 (264)
+...++|||+|||+++++++|+++|+.||.|.++.+.. ++|||||+|.+.++|.+|++ ||+..+.|++|+|.+++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 44578999999999999999999999999999999984 34899999999999999997 99999999999999985
No 258
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.69 E-value=1.6e-17 Score=118.58 Aligned_cols=76 Identities=28% Similarity=0.418 Sum_probs=69.2
Q ss_pred cEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecCCC
Q 024696 79 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTA 155 (264)
Q Consensus 79 ~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~~ 155 (264)
++|||+|||+++++++|+++|++||+|.++.+..++. .++|||||+|.+.+ |.+|++ +||..+.|++|+|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 5899999999999999999999999999999998864 56899999999999 999998 9999999999999998643
No 259
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.69 E-value=2.7e-17 Score=118.59 Aligned_cols=79 Identities=15% Similarity=0.132 Sum_probs=70.2
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEee
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 151 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~ 151 (264)
....++|||+|||+++++++|+++|++||.|..+.++.++. .++|||||+|.+.++|.+|++ ||+..+.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34568999999999999999999999999998888877654 468999999999999999998 999999999999998
Q ss_pred cC
Q 024696 152 SK 153 (264)
Q Consensus 152 s~ 153 (264)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 260
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=9.9e-17 Score=119.31 Aligned_cols=77 Identities=16% Similarity=0.143 Sum_probs=70.1
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecCC
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 154 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~ 154 (264)
.+.++|||+|||+++++++|+++|++||.|..|.+.. ++|||||+|.+.++|.+|++ |||..+.|++|.|.++..
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 3467899999999999999999999999999999875 34799999999999999998 999999999999999865
Q ss_pred CC
Q 024696 155 AI 156 (264)
Q Consensus 155 ~~ 156 (264)
..
T Consensus 84 ~~ 85 (111)
T 1whx_A 84 GV 85 (111)
T ss_dssp TT
T ss_pred Cc
Confidence 43
No 261
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.69 E-value=1.1e-16 Score=118.59 Aligned_cols=78 Identities=29% Similarity=0.461 Sum_probs=69.9
Q ss_pred ccccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEE
Q 024696 71 AQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 149 (264)
Q Consensus 71 ~~~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V 149 (264)
....+...++|||+|||+++++++|+++|++||.|..+.+. +|||||+|.+.++|.+|++ |||..+.|++|.|
T Consensus 24 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 24 RQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp ----CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 33456678999999999999999999999999999999998 4899999999999999998 9999999999999
Q ss_pred eecCC
Q 024696 150 LPSKT 154 (264)
Q Consensus 150 ~~s~~ 154 (264)
.+++.
T Consensus 98 ~~a~~ 102 (108)
T 2jvo_A 98 VYSKL 102 (108)
T ss_dssp ESCSC
T ss_pred EEecC
Confidence 99853
No 262
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.68 E-value=2.6e-17 Score=113.38 Aligned_cols=73 Identities=18% Similarity=0.322 Sum_probs=67.9
Q ss_pred EEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEeec
Q 024696 80 TVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 152 (264)
Q Consensus 80 ~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~s 152 (264)
+|||+|||+++++++|+++|++||+|.++.+..++. .++|||||+|.+.++|.+|+++++..+.|++|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 589999999999999999999999999999998764 5689999999999999999998899999999999874
No 263
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=5.8e-17 Score=120.10 Aligned_cols=76 Identities=17% Similarity=0.103 Sum_probs=70.4
Q ss_pred CCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEeecC
Q 024696 77 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 153 (264)
Q Consensus 77 ~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~-~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~s~ 153 (264)
...+|||+|||+++|+++|+++|+.| .|.+|.++.++. .++|||||+|.+.++|.+|+++|+..++|+.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 45789999999999999999999999 899999998764 57899999999999999999999999999999998874
No 264
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.5e-16 Score=118.29 Aligned_cols=77 Identities=19% Similarity=0.192 Sum_probs=70.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKT 252 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~~ 252 (264)
..++|||+|||..+++++|+++|++ ||.|..|.+.+ ++|||||+|.+.++|.+|++ |||..+.|+.|+|.|++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~v~i~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSR-FGSLGRVLLPE----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHT-TSCEEEEECCS----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-cCCEEEEEEeC----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 3589999999999999999999999 79999999875 45799999999999999998 999999999999999976
Q ss_pred CCC
Q 024696 253 PVR 255 (264)
Q Consensus 253 ~~~ 255 (264)
..-
T Consensus 84 ~~~ 86 (111)
T 1whx_A 84 GVF 86 (111)
T ss_dssp TTT
T ss_pred Ccc
Confidence 544
No 265
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.8e-16 Score=117.66 Aligned_cols=79 Identities=19% Similarity=0.291 Sum_probs=70.3
Q ss_pred ccCCceEEEeCCCCC-CCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hC--CceeCCeeEEE
Q 024696 172 EMCSRTIYCTNIDKK-VTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CS--GAVLGSLPIRV 247 (264)
Q Consensus 172 ~~~~~~l~V~nL~~~-~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~--g~~~~g~~l~v 247 (264)
..++++|||+|||++ +++++|+++|++ ||.|.+|.+.++ +|||||+|.+.++|.+|++ |+ +..+.|++|+|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~-fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEP-YGKIKNYILMRM----KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTT-TSCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHh-cCCEEEEEEecC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 446799999999998 999999999999 699999999754 5799999999999999998 75 56699999999
Q ss_pred eecCCCCC
Q 024696 248 SPSKTPVR 255 (264)
Q Consensus 248 ~~a~~~~~ 255 (264)
.||++...
T Consensus 97 ~~a~~~~~ 104 (112)
T 1x4f_A 97 DLSEKYKK 104 (112)
T ss_dssp EEECSCSS
T ss_pred EECccccc
Confidence 99987644
No 266
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=113.49 Aligned_cols=76 Identities=25% Similarity=0.442 Sum_probs=70.0
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
.+...++|||+|||+++|+++|+++|++||.|.++.+.+ +||||+|.+.++|++|++ |++..+.|++|+|.++
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 355678999999999999999999999999999999983 499999999999999998 9999999999999998
Q ss_pred CCC
Q 024696 153 KTA 155 (264)
Q Consensus 153 ~~~ 155 (264)
+..
T Consensus 79 ~~~ 81 (90)
T 2dnp_A 79 TKG 81 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 267
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.68 E-value=1.9e-16 Score=124.87 Aligned_cols=82 Identities=26% Similarity=0.352 Sum_probs=75.1
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEe
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 150 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~--~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~ 150 (264)
.....++|||+|||+++++++|+++|+.||.|.++.++.++ +.++|||||+|.+.++|.+|++ |||..+.|++|+|.
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34557899999999999999999999999999999999985 3578999999999999999998 99999999999999
Q ss_pred ecCCC
Q 024696 151 PSKTA 155 (264)
Q Consensus 151 ~s~~~ 155 (264)
+++..
T Consensus 146 ~a~~~ 150 (158)
T 2kn4_A 146 MARYG 150 (158)
T ss_dssp EECCS
T ss_pred ECCCC
Confidence 98643
No 268
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.6e-17 Score=120.65 Aligned_cols=81 Identities=21% Similarity=0.330 Sum_probs=73.8
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEeec
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 152 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~s 152 (264)
+...++|||+|||+++++++|+++|+.||.|..|.++.++. .++|||||+|.+.++|.+|++.++..+.|++|.|.++
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEEC
Confidence 44568899999999999999999999999999999999864 5689999999999999999988889999999999998
Q ss_pred CCC
Q 024696 153 KTA 155 (264)
Q Consensus 153 ~~~ 155 (264)
...
T Consensus 104 ~~~ 106 (116)
T 1x4b_A 104 VAR 106 (116)
T ss_dssp SSC
T ss_pred CCC
Confidence 643
No 269
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.68 E-value=1.4e-16 Score=125.50 Aligned_cols=82 Identities=26% Similarity=0.273 Sum_probs=75.4
Q ss_pred ccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEE
Q 024696 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 149 (264)
Q Consensus 73 ~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V 149 (264)
......++|||+|||+++|+++|+++|+.||+|..|.++.+.. .++|||||+|.+.++|.+|++ |++..+.|++|+|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3445678999999999999999999999999999999999875 468999999999999999998 9999999999999
Q ss_pred eecCC
Q 024696 150 LPSKT 154 (264)
Q Consensus 150 ~~s~~ 154 (264)
.+++.
T Consensus 114 ~~a~~ 118 (156)
T 1h2v_Z 114 DWDAG 118 (156)
T ss_dssp EEESC
T ss_pred EECCC
Confidence 99864
No 270
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.68 E-value=1.8e-16 Score=114.96 Aligned_cols=74 Identities=18% Similarity=0.320 Sum_probs=68.5
Q ss_pred cCCCCcEEEEcCCCC-cCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEee
Q 024696 74 DEVIRRTVYVSDIDQ-QVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 151 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~-~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~ 151 (264)
.....++|||+|||+ ++++++|+++|+.||.|.++.+. +|||||+|.+.++|.+|++ ++|..+.|++|+|.+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 91 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEV 91 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 456788999999998 99999999999999999999983 4899999999999999998 999999999999999
Q ss_pred cC
Q 024696 152 SK 153 (264)
Q Consensus 152 s~ 153 (264)
++
T Consensus 92 a~ 93 (97)
T 2xnq_A 92 SS 93 (97)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 271
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.68 E-value=6.6e-17 Score=123.76 Aligned_cols=81 Identities=16% Similarity=0.206 Sum_probs=73.4
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeE--EEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCC----CCCC
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVD--CRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGT----MLGF 144 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~--v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~----~~~g 144 (264)
.+...++|||+|||+++|+++|+++|+.||.|.. |+++.|+. .++|||||+|.+. +|.+|++ ||+. .+.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3456789999999999999999999999999976 99999873 5789999999999 9999998 9999 9999
Q ss_pred cceEEeecCCC
Q 024696 145 YPVRVLPSKTA 155 (264)
Q Consensus 145 ~~l~V~~s~~~ 155 (264)
++|+|.+++..
T Consensus 98 r~l~V~~a~~~ 108 (131)
T 2m2b_A 98 KTINVEFAKGS 108 (131)
T ss_dssp CCCCCEECCCS
T ss_pred EEEEEEECCCC
Confidence 99999998653
No 272
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.68 E-value=3.2e-17 Score=121.14 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=73.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCc---eEEEEEeccC-CCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEee
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGE---VQRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSP 249 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~---V~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~ 249 (264)
...+|||+|||+++|+++|+++|++ ||. |..|.++.++ ++++|||||+|.+.++|.+|+++|+..++|+.|+|.+
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~-~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~ 88 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSD-CRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVYE 88 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTT-SCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHh-cCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEEE
Confidence 4589999999999999999999999 688 8999999876 7899999999999999999999999999999999999
Q ss_pred cCCC
Q 024696 250 SKTP 253 (264)
Q Consensus 250 a~~~ 253 (264)
+++.
T Consensus 89 a~~~ 92 (107)
T 2lmi_A 89 INNE 92 (107)
T ss_dssp CCHH
T ss_pred CCHH
Confidence 8764
No 273
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.9e-16 Score=112.55 Aligned_cols=76 Identities=25% Similarity=0.350 Sum_probs=69.9
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
.+...++|||+|||+++++++|+++|++||.|.++.+.+ +||||+|.+.++|.+|++ ||+..+.|++|+|.++
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 79 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 79 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 455678999999999999999999999999999999973 499999999999999997 9999999999999998
Q ss_pred CCC
Q 024696 153 KTA 155 (264)
Q Consensus 153 ~~~ 155 (264)
+..
T Consensus 80 ~~~ 82 (92)
T 2dgt_A 80 TSR 82 (92)
T ss_dssp SCC
T ss_pred cCC
Confidence 643
No 274
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6e-17 Score=122.80 Aligned_cols=80 Identities=20% Similarity=0.220 Sum_probs=70.2
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEee
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLP 151 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~--~~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~ 151 (264)
.....++|||+|||+++|+++|+++|+.||.|..+.++.+. +.++|||||+|.+.++|.+|+++|+..+.|++|.|.+
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEE
Confidence 34566899999999999999999999999999874444433 3568999999999999999999999999999999999
Q ss_pred cC
Q 024696 152 SK 153 (264)
Q Consensus 152 s~ 153 (264)
+.
T Consensus 101 a~ 102 (124)
T 1wel_A 101 IT 102 (124)
T ss_dssp EC
T ss_pred CC
Confidence 74
No 275
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.68 E-value=2.8e-16 Score=119.48 Aligned_cols=76 Identities=21% Similarity=0.200 Sum_probs=69.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeE-EEEEECCHHHHHHHHH-hCCceeCC--eeEEEeec
Q 024696 175 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRI-AFVEFAMAESAIAALN-CSGAVLGS--LPIRVSPS 250 (264)
Q Consensus 175 ~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~-afV~f~~~~~A~~Ai~-l~g~~~~g--~~l~v~~a 250 (264)
...|||+||++.+|+++|+++|++ ||.|.+|.+..+. +|+ |||+|.+.++|.+|++ |||..+.| ++|+|.||
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~-yG~V~~V~i~~~~---~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSK-FGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTT-SSCEEEEEEEEET---TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred eEEEEECCCCCCCCHHHHHHHHhC-cCCEEEEEEEcCC---CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 367889999999999999999999 7999999987643 577 9999999999999999 99999988 99999999
Q ss_pred CCCC
Q 024696 251 KTPV 254 (264)
Q Consensus 251 ~~~~ 254 (264)
++..
T Consensus 104 k~~~ 107 (130)
T 3zzy_A 104 KLTS 107 (130)
T ss_dssp SCSS
T ss_pred CCCc
Confidence 9863
No 276
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.68 E-value=6.7e-17 Score=118.12 Aligned_cols=80 Identities=19% Similarity=0.353 Sum_probs=73.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecCC
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKT 252 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~a~~ 252 (264)
..++|||+|||..+++++|+++|++ ||.|..|.+..++ ++++|||||+|.+.++|.+|++ +|..++|+.|.|.++.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFAR-YGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-CCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECCc
Confidence 4489999999999999999999999 6999999999986 6799999999999999999999 99999999999999876
Q ss_pred CCC
Q 024696 253 PVR 255 (264)
Q Consensus 253 ~~~ 255 (264)
...
T Consensus 86 ~~~ 88 (102)
T 2xs2_A 86 KQN 88 (102)
T ss_dssp CC-
T ss_pred Ccc
Confidence 543
No 277
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.68 E-value=3.2e-16 Score=114.79 Aligned_cols=76 Identities=22% Similarity=0.373 Sum_probs=69.5
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecC
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 153 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~ 153 (264)
....++|||+|||+++|+++|+++|++||.|..+.+++ |||||+|.+.++|.+|++ |++..+.|++|.|.+++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 34568899999999999999999999999999999872 599999999999999998 99999999999999986
Q ss_pred CCC
Q 024696 154 TAI 156 (264)
Q Consensus 154 ~~~ 156 (264)
...
T Consensus 82 ~~~ 84 (103)
T 2dgu_A 82 PPD 84 (103)
T ss_dssp CCC
T ss_pred CCc
Confidence 543
No 278
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=3e-16 Score=112.98 Aligned_cols=78 Identities=32% Similarity=0.392 Sum_probs=68.4
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEeecCC
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 154 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~s~~ 154 (264)
....++|||+|||+++++++|+++|+.||.|.+| +.++.+.+ ||||+|.+.++|.+|+++++..+.|++|.|.++..
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~-~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV-FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC-EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc-EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCc
Confidence 3456899999999999999999999999999987 44544434 99999999999999999999999999999998754
Q ss_pred C
Q 024696 155 A 155 (264)
Q Consensus 155 ~ 155 (264)
.
T Consensus 82 ~ 82 (94)
T 2e5g_A 82 K 82 (94)
T ss_dssp S
T ss_pred C
Confidence 3
No 279
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=122.69 Aligned_cols=80 Identities=29% Similarity=0.388 Sum_probs=72.9
Q ss_pred ccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEE
Q 024696 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 149 (264)
Q Consensus 73 ~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V 149 (264)
......++|||+|||+++++++|+++|+.||+|..+.++.++. .++|||||+|.+.++|.+|++ +++..+.|++|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456788999999999999999999999999999999998854 568999999999999999997 9999999999999
Q ss_pred eec
Q 024696 150 LPS 152 (264)
Q Consensus 150 ~~s 152 (264)
.++
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 874
No 280
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.6e-16 Score=114.97 Aligned_cols=76 Identities=17% Similarity=0.292 Sum_probs=68.3
Q ss_pred cCCCCcEEEEcCCCC-cCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEee
Q 024696 74 DEVIRRTVYVSDIDQ-QVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 151 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~-~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~ 151 (264)
+....++|||+|||+ ++++++|+++|++||.|.++.+. +|||||+|.+.++|.+|++ |++..+.|++|+|.+
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 345678999999998 99999999999999999999985 4899999999999999998 999999999999999
Q ss_pred cCCC
Q 024696 152 SKTA 155 (264)
Q Consensus 152 s~~~ 155 (264)
++..
T Consensus 80 a~~~ 83 (96)
T 2kvi_A 80 SSSN 83 (96)
T ss_dssp EECC
T ss_pred cCcC
Confidence 8643
No 281
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.1e-16 Score=115.22 Aligned_cols=79 Identities=20% Similarity=0.243 Sum_probs=69.9
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEee
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 151 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~ 151 (264)
.+...++|||+|||+++++++|+++|++||.| .++.+. +.++|||||+|.+.++|++|++ |++..+.|++|+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 45678999999999999999999999999987 455553 4578999999999999999998 999999999999999
Q ss_pred cCCC
Q 024696 152 SKTA 155 (264)
Q Consensus 152 s~~~ 155 (264)
++..
T Consensus 88 a~~~ 91 (101)
T 2fc9_A 88 QGPR 91 (101)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8644
No 282
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.4e-16 Score=118.23 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=68.3
Q ss_pred CCCCcEEEEcCCCCc-CCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hc--CCCCCCcceEEe
Q 024696 75 EVIRRTVYVSDIDQQ-VTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LA--GTMLGFYPVRVL 150 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~-~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~--~~~~~g~~l~V~ 150 (264)
....++|||+|||++ +++++|+++|++||.|.+|.+++. +|||||+|.+.++|..|++ |+ +..+.|++|+|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM----KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 456789999999998 999999999999999999999854 4899999999999999998 76 456999999999
Q ss_pred ecCC
Q 024696 151 PSKT 154 (264)
Q Consensus 151 ~s~~ 154 (264)
+++.
T Consensus 98 ~a~~ 101 (112)
T 1x4f_A 98 LSEK 101 (112)
T ss_dssp EECS
T ss_pred ECcc
Confidence 9864
No 283
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6.3e-17 Score=122.68 Aligned_cols=80 Identities=20% Similarity=0.201 Sum_probs=71.2
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEecc--CCCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEeec
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGD--YQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPS 250 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~--~~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~a 250 (264)
....+|||+|||+.+++++|+++|++ ||.|..+.++.+ .++++|||||+|.+.++|.+|+++||..++|+.|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKK-LDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCS-SCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHh-cCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 35589999999999999999999999 699987544443 378999999999999999999999999999999999998
Q ss_pred CCC
Q 024696 251 KTP 253 (264)
Q Consensus 251 ~~~ 253 (264)
++.
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 764
No 284
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=5e-16 Score=111.84 Aligned_cols=78 Identities=22% Similarity=0.328 Sum_probs=67.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecCCC
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKTP 253 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~a~~~ 253 (264)
..++|||+|||..+++++|+++|++ ||.|..| +.+....+ ||||+|.+.++|.+|++|||..+.|+.|+|.++.+.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~-~G~v~~v--~~~~~~g~-~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLA-FGPVASV--VMDKDKGV-FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGG-TSCEEEE--EECSSSCC-EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHh-cCCeEEE--EEcCCCCc-EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCcC
Confidence 3489999999999999999999999 6999998 33332222 999999999999999999999999999999999766
Q ss_pred CC
Q 024696 254 VR 255 (264)
Q Consensus 254 ~~ 255 (264)
..
T Consensus 83 ~~ 84 (94)
T 2e5g_A 83 EF 84 (94)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 285
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.67 E-value=4.1e-16 Score=122.99 Aligned_cols=80 Identities=24% Similarity=0.372 Sum_probs=75.1
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 024696 175 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 251 (264)
Q Consensus 175 ~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~ 251 (264)
.++|||+|||+.+++++|+++|++ ||.|.++.+.+++ ++++|||||+|.+.++|.+|++ ++|..+.|++|+|.+++
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGS-IGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHT-TSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHh-cCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 489999999999999999999999 6999999999875 6799999999999999999998 99999999999999998
Q ss_pred CCCC
Q 024696 252 TPVR 255 (264)
Q Consensus 252 ~~~~ 255 (264)
+...
T Consensus 81 ~~~~ 84 (167)
T 1fxl_A 81 PSSA 84 (167)
T ss_dssp CCCG
T ss_pred CCcc
Confidence 7754
No 286
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.67 E-value=9e-17 Score=124.77 Aligned_cols=81 Identities=25% Similarity=0.319 Sum_probs=70.8
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEE--------EEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCee
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRL--------RLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLP 244 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v--------~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~ 244 (264)
++++|||+|||+.+|+++|+++|++ ||.|..+ .+.. .++++|||||+|.+.++|.+|+. |||..+.|+.
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~-~G~i~~~~~~~~~di~~~~-~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGR-YVDFSSETQRIMFDIRLMK-EGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGG-GCCTTCHHHHHHCEEEEEE-ETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-hCCcccccccceeeEEecc-CCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 4589999999999999999999999 6988764 3332 37889999999999999999999 9999999999
Q ss_pred EEEeecCCCCCC
Q 024696 245 IRVSPSKTPVRP 256 (264)
Q Consensus 245 l~v~~a~~~~~~ 256 (264)
|+|.|+++...+
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999886443
No 287
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.67 E-value=2.9e-16 Score=122.87 Aligned_cols=78 Identities=28% Similarity=0.347 Sum_probs=72.3
Q ss_pred ccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEee
Q 024696 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 151 (264)
Q Consensus 73 ~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~ 151 (264)
......++|||+|||+++|+++|+++|++||.|.++.++.+ ++|||||+|.+.++|.+|++ |||..+.|++|+|.+
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34556789999999999999999999999999999999987 45999999999999999998 999999999999999
Q ss_pred cC
Q 024696 152 SK 153 (264)
Q Consensus 152 s~ 153 (264)
++
T Consensus 145 a~ 146 (150)
T 2i2y_A 145 SN 146 (150)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 288
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.67 E-value=3.5e-16 Score=123.77 Aligned_cols=83 Identities=18% Similarity=0.329 Sum_probs=76.3
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
++++|||+|||.++++++|+++|++ ||.|.++.+.+++ +.++|||||+|.+.++|.+|++ ++|..+.|++|+|.|+
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~-~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 80 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRA-IGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 80 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHT-TSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEec
Confidence 4589999999999999999999999 6999999999875 6789999999999999999998 9999999999999999
Q ss_pred CCCCCCC
Q 024696 251 KTPVRPR 257 (264)
Q Consensus 251 ~~~~~~~ 257 (264)
++.....
T Consensus 81 ~~~~~~~ 87 (168)
T 1b7f_A 81 RPGGESI 87 (168)
T ss_dssp CCCSSTT
T ss_pred CCCcccC
Confidence 8875443
No 289
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.67 E-value=2.1e-16 Score=112.43 Aligned_cols=75 Identities=16% Similarity=0.168 Sum_probs=69.0
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKT 252 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~~ 252 (264)
..++|||+|||+.+++++|+++|++ | .|..+.+. +++|||||+|.+.++|.+|++ +||..+.|++|+|++++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~-~-~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKD-Y-DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCS-S-CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhh-C-CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 3589999999999999999999999 7 99999885 567899999999999999999 999999999999999876
Q ss_pred CC
Q 024696 253 PV 254 (264)
Q Consensus 253 ~~ 254 (264)
..
T Consensus 78 ~~ 79 (88)
T 1wg1_A 78 DA 79 (88)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 290
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.4e-15 Score=110.04 Aligned_cols=77 Identities=21% Similarity=0.253 Sum_probs=69.4
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 251 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~ 251 (264)
...++|||+|+ ++++++|+++|++ ||.|..|.+. .++|||||+|.+.++|.+|++ |||..+.|++|+|.|++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~-~G~i~~v~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSP-FGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTT-TSCEEEEEEE----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhh-CCCEEEEEec----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 35589999996 8999999999999 6999999995 456799999999999999998 99999999999999998
Q ss_pred CCCCC
Q 024696 252 TPVRP 256 (264)
Q Consensus 252 ~~~~~ 256 (264)
++...
T Consensus 86 ~~~~~ 90 (97)
T 1x5p_A 86 KQPML 90 (97)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87543
No 291
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.67 E-value=2.9e-16 Score=123.81 Aligned_cols=77 Identities=21% Similarity=0.166 Sum_probs=69.8
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCC--eeEEEeecC
Q 024696 175 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGS--LPIRVSPSK 251 (264)
Q Consensus 175 ~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g--~~l~v~~a~ 251 (264)
..+|||+||++.+|+++|+++|++ ||.|++|.+..+. ++|||||+|.+.++|.+|++ |||..+.| ++|+|+|++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~-fG~V~~V~i~~k~--~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSK-FGTVLKIITFTKN--NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHH-HSCEEEEEEEESS--SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHh-cCCEEEEEEEeCC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 367999999999999999999999 6999999997543 57899999999999999999 99999965 999999999
Q ss_pred CCC
Q 024696 252 TPV 254 (264)
Q Consensus 252 ~~~ 254 (264)
+..
T Consensus 123 ~~~ 125 (164)
T 1sjr_A 123 LTS 125 (164)
T ss_dssp SSS
T ss_pred CCc
Confidence 873
No 292
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=7.8e-16 Score=111.83 Aligned_cols=76 Identities=26% Similarity=0.386 Sum_probs=68.9
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcC--CCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEe
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTC--GQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 150 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~--G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~ 150 (264)
.....++|||+|||+++|+++|+++|+.| |.|..+.+. +|||||+|.+.++|.+|++ ||+..+.|++|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999 999988775 3799999999999999998 99999999999999
Q ss_pred ecCCC
Q 024696 151 PSKTA 155 (264)
Q Consensus 151 ~s~~~ 155 (264)
+++..
T Consensus 85 ~a~~~ 89 (99)
T 2cpd_A 85 LAKPV 89 (99)
T ss_dssp CCCCC
T ss_pred ECCCC
Confidence 98643
No 293
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=5.1e-16 Score=112.10 Aligned_cols=78 Identities=17% Similarity=0.211 Sum_probs=70.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEE-EeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLR-LLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 251 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~-i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~ 251 (264)
..++|||+|||+.+++++|+++|++ ||.|..++ ++.++.. |.|||+|.+.++|.+|++ |||..+.|++|+|.+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~-~G~v~~~~~i~~~~~~--~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 90 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQ-YGVVESCEQVNTDSET--AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIP 90 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHH-HSCEEEEEEECCSSSS--EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHh-cCCeEEEEEeecCCCC--CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 4589999999999999999999999 69999994 7777532 349999999999999998 99999999999999999
Q ss_pred CCC
Q 024696 252 TPV 254 (264)
Q Consensus 252 ~~~ 254 (264)
+..
T Consensus 91 ~~~ 93 (96)
T 2e44_A 91 DEM 93 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 873
No 294
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.48 E-value=5.5e-18 Score=126.98 Aligned_cols=82 Identities=24% Similarity=0.312 Sum_probs=75.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEE--------EEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCC
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQR--------LRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGS 242 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~--------v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g 242 (264)
..++|||+|||..+++++|+++|++ ||.|.. |.++.++ +.++|||||+|.+.++|.+|++ |||..+.|
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~-~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQ-IGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 4589999999999999999999999 699998 8888874 6789999999999999999999 99999999
Q ss_pred eeEEEeecCCCCCC
Q 024696 243 LPIRVSPSKTPVRP 256 (264)
Q Consensus 243 ~~l~v~~a~~~~~~ 256 (264)
++|+|++++++...
T Consensus 85 ~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 85 NPIKVSFATRRADF 98 (116)
Confidence 99999999887544
No 295
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6.6e-16 Score=115.22 Aligned_cols=79 Identities=23% Similarity=0.295 Sum_probs=69.9
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCe----eEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEE
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 149 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I----~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V 149 (264)
....++|||+|||+++|+++|+++|+.||.| ..+.+. .+.++|||||+|.+.++|.+|++ |++..+.|++|+|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~--~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM--TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE--CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC--CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 4467899999999999999999999999998 455555 44567999999999999999998 9999999999999
Q ss_pred eecCCC
Q 024696 150 LPSKTA 155 (264)
Q Consensus 150 ~~s~~~ 155 (264)
.+++..
T Consensus 100 ~~a~~~ 105 (115)
T 2cpx_A 100 EFGKNK 105 (115)
T ss_dssp EECCCC
T ss_pred EEccCC
Confidence 998644
No 296
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.66 E-value=1.7e-16 Score=132.87 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=72.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCC--ceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEe
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCG--EVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 248 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G--~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~ 248 (264)
..++|||+||+..+|+++|+++|++ || .|.+|+|+.++ ++++|||||+|.+.++|.+|++ |||..|.|+.|+|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~-~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHS-LGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHT-TTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHH-HCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEE
Confidence 4578999999999999999999999 69 99999999985 7899999999999999999999 99999999999999
Q ss_pred ecCCC
Q 024696 249 PSKTP 253 (264)
Q Consensus 249 ~a~~~ 253 (264)
++++.
T Consensus 146 ~a~~~ 150 (229)
T 3q2s_C 146 PVNKQ 150 (229)
T ss_dssp ECCHH
T ss_pred ECCCC
Confidence 98653
No 297
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.66 E-value=8.2e-17 Score=116.46 Aligned_cols=79 Identities=24% Similarity=0.409 Sum_probs=70.7
Q ss_pred CCCCcEEEEcCCCCcCCHHHHH----HHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEE
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLA----TLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 149 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~----~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V 149 (264)
....++|||+|||+++++++|+ ++|++||.|.++.+... +.++|||||+|.+.++|.+|++ |+|..+.|++|+|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS-LKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH-HHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcC-CCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 4567899999999999999999 99999999999988742 3456999999999999999998 9999999999999
Q ss_pred eecCC
Q 024696 150 LPSKT 154 (264)
Q Consensus 150 ~~s~~ 154 (264)
.+++.
T Consensus 84 ~~a~~ 88 (97)
T 1nu4_A 84 QYAKT 88 (97)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 99853
No 298
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.66 E-value=1.9e-16 Score=120.17 Aligned_cols=79 Identities=24% Similarity=0.306 Sum_probs=70.7
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCee--EEEEecCCC-CCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEe
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVV--DCRICGDPN-SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVL 150 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~--~v~i~~~~~-~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~ 150 (264)
+....++|||+|||+++|+++|+++|++| .|. +|.++.|+. .++|||||+|.+.++|++|+++++..++|+.|.|.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVF 116 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEE
Confidence 34567889999999999999999999999 676 899998764 67899999999999999999978899999999998
Q ss_pred ecC
Q 024696 151 PSK 153 (264)
Q Consensus 151 ~s~ 153 (264)
++.
T Consensus 117 ~a~ 119 (126)
T 2hgm_A 117 KSS 119 (126)
T ss_dssp EEC
T ss_pred ECC
Confidence 874
No 299
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.66 E-value=7.6e-16 Score=121.33 Aligned_cols=80 Identities=23% Similarity=0.417 Sum_probs=74.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecCCC
Q 024696 176 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTP 253 (264)
Q Consensus 176 ~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~~~ 253 (264)
++|||+|||.++|+++|+++|++ ||.|.++.+..++ ++++|||||+|.+.++|.+|++ ++|..+.|+.|+|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~-~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQV-GGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGG-GSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHh-cCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 58999999999999999999999 6999999999887 6799999999999999999997 9999999999999999877
Q ss_pred CCC
Q 024696 254 VRP 256 (264)
Q Consensus 254 ~~~ 256 (264)
...
T Consensus 80 ~~~ 82 (166)
T 3md3_A 80 QQS 82 (166)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 300
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=1.6e-15 Score=114.70 Aligned_cols=74 Identities=20% Similarity=0.201 Sum_probs=66.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeE-EEEEECCHHHHHHHHH-hCCceeCC--eeEEEeecC
Q 024696 176 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRI-AFVEFAMAESAIAALN-CSGAVLGS--LPIRVSPSK 251 (264)
Q Consensus 176 ~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~-afV~f~~~~~A~~Ai~-l~g~~~~g--~~l~v~~a~ 251 (264)
..|||+||++.+++++|+++|++ ||.|.+|.+... .|| |||+|.+.++|..|++ |||..+.| ++|+|.||+
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~-yG~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNP-VGKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTT-TSCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHh-cCCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 34689999999999999999999 799999999753 276 9999999999999998 99999987 699999999
Q ss_pred CCC
Q 024696 252 TPV 254 (264)
Q Consensus 252 ~~~ 254 (264)
++.
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 874
No 301
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.65 E-value=1.5e-16 Score=120.76 Aligned_cols=78 Identities=27% Similarity=0.216 Sum_probs=70.6
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceE--EEEEeccC-CCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEeec
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQ--RLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPS 250 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~--~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~a 250 (264)
...+|||+|||+++|+++|+++|++ | .|. .|+|+.|+ |+++|||||+|.+.++|.+|+++++..++|+.|+|.++
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~-~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSG-L-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKS 118 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTT-S-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhc-C-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEEC
Confidence 4588999999999999999999999 6 565 89999876 78999999999999999999997789999999999988
Q ss_pred CCC
Q 024696 251 KTP 253 (264)
Q Consensus 251 ~~~ 253 (264)
.+.
T Consensus 119 ~~~ 121 (126)
T 2hgm_A 119 SQE 121 (126)
T ss_dssp CHH
T ss_pred CHH
Confidence 643
No 302
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=5.5e-16 Score=111.90 Aligned_cols=78 Identities=23% Similarity=0.367 Sum_probs=70.4
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEE-EEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDC-RICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v-~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
....++|||+|||+++++++|+++|+.||.|.++ .++.++.+ |.|||+|.+.++|.+|++ ||+..+.|++|+|.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~--~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET--AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS--EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC--CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3456889999999999999999999999999999 47777654 459999999999999998 9999999999999998
Q ss_pred CC
Q 024696 153 KT 154 (264)
Q Consensus 153 ~~ 154 (264)
..
T Consensus 90 ~~ 91 (96)
T 2e44_A 90 PD 91 (96)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 303
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.65 E-value=5.5e-16 Score=110.64 Aligned_cols=78 Identities=17% Similarity=0.270 Sum_probs=62.8
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecCC
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKT 252 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~a~~ 252 (264)
....+|||+|||+++|+++|+++|++ ||.|.+|.++++ ++|||||+|++.++|.++ .-....+.|++|.|.+++|
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~-~G~i~~v~i~~~---srGfaFV~F~~~~~A~~~-~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQ-YGEVVDVFIPKP---FRAFAFVTFADDKVAQSL-CGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTT-TSCEEEEECCSS---CCSEEEEEESCHHHHHHH-TTCEEEETTEEEEEEECC-
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhc-cCCEEEEEEeeC---CCCEEEEEECCHHHHHHH-cCCCcccCCEEEEEEEcCC
Confidence 35599999999999999999999999 699999999885 678999999999999842 2123455799999999988
Q ss_pred CCC
Q 024696 253 PVR 255 (264)
Q Consensus 253 ~~~ 255 (264)
+..
T Consensus 84 k~~ 86 (89)
T 3d2w_A 84 KHN 86 (89)
T ss_dssp ---
T ss_pred CCc
Confidence 643
No 304
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.65 E-value=6.5e-16 Score=114.48 Aligned_cols=73 Identities=25% Similarity=0.479 Sum_probs=67.7
Q ss_pred CCCcEEEEcCCCCc-CCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecC
Q 024696 76 VIRRTVYVSDIDQQ-VTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 153 (264)
Q Consensus 76 ~~~~~v~V~nLp~~-~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~ 153 (264)
...++|||+|||++ +++++|+++|++||.|.+|.+ ++|||||+|.+.++|.+|++ |++..+.|++|+|.+++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 98 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAG 98 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESC
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 34589999999999 999999999999999999998 34899999999999999997 99999999999999985
Q ss_pred C
Q 024696 154 T 154 (264)
Q Consensus 154 ~ 154 (264)
.
T Consensus 99 ~ 99 (110)
T 1wf1_A 99 E 99 (110)
T ss_dssp C
T ss_pred C
Confidence 3
No 305
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.65 E-value=3.1e-16 Score=126.25 Aligned_cols=84 Identities=20% Similarity=0.292 Sum_probs=77.2
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
..+++|||+|||..+++++|+++|++ ||.|..|.+..+. +.++|||||+|.+.++|.+|++ +||..+.|+.|+|.||
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAE-FGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHH-TSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-cCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45689999999999999999999999 6999999999987 7789999999999999999999 9999999999999999
Q ss_pred CCCCCCC
Q 024696 251 KTPVRPR 257 (264)
Q Consensus 251 ~~~~~~~ 257 (264)
.+.....
T Consensus 165 ~~~~~~~ 171 (177)
T 2f3j_A 165 ASQIDLE 171 (177)
T ss_dssp SSGGGGC
T ss_pred cCCCCCC
Confidence 8765433
No 306
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.8e-16 Score=111.72 Aligned_cols=79 Identities=16% Similarity=0.285 Sum_probs=67.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecCCC
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKTP 253 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~a~~~ 253 (264)
.+++|||+|||.++++++|+++|++ ||.|..|.++++ ++|||||+|.+.++|++|... +..+.|++|+|.+++++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~---~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQ-YGDVMDVFIPKP---FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEPK 78 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTT-TSCCCEEECCSS---CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHH-cCCeeEEEEecC---CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCCC
Confidence 4589999999999999999999999 699999999876 678999999999999765332 45669999999999988
Q ss_pred CCCC
Q 024696 254 VRPR 257 (264)
Q Consensus 254 ~~~~ 257 (264)
....
T Consensus 79 ~~~~ 82 (88)
T 1wf0_A 79 HNSN 82 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5543
No 307
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.65 E-value=1.4e-16 Score=115.03 Aligned_cols=78 Identities=18% Similarity=0.246 Sum_probs=69.3
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
.....++|||+|||+++++++|+++|+.||.|..+ ...+.++|||||+|.+.++|.+|++ +++..+.|++|+|.++
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 34567899999999999999999999999998766 3445578999999999999999998 9999999999999998
Q ss_pred CC
Q 024696 153 KT 154 (264)
Q Consensus 153 ~~ 154 (264)
..
T Consensus 89 ~~ 90 (96)
T 1fjc_A 89 GE 90 (96)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 308
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.1e-16 Score=115.40 Aligned_cols=77 Identities=13% Similarity=0.258 Sum_probs=69.3
Q ss_pred CCceEEE--eCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCcee-----CCeeE
Q 024696 174 CSRTIYC--TNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVL-----GSLPI 245 (264)
Q Consensus 174 ~~~~l~V--~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~-----~g~~l 245 (264)
++++||| +||+..+++++|+++|++ ||.|..|.++.+ +|||||+|.+.++|.+|++ |||..+ .|++|
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~-fG~v~~v~i~~~----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l 98 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEK-CGLVDALLMPPN----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHH-HSCEEEEECCTT----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHh-cCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence 4588999 779999999999999999 699999998754 5799999999999999998 999998 78999
Q ss_pred EEeecCCCCC
Q 024696 246 RVSPSKTPVR 255 (264)
Q Consensus 246 ~v~~a~~~~~ 255 (264)
.|.|++.-+.
T Consensus 99 ~v~~a~~~p~ 108 (114)
T 2cq2_A 99 YLNFVEKVQW 108 (114)
T ss_dssp EEEEESCCCC
T ss_pred EEEecccCcc
Confidence 9999976543
No 309
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.4e-16 Score=120.55 Aligned_cols=79 Identities=22% Similarity=0.177 Sum_probs=71.8
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCce----EEEEEeccC-CCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEE
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEV----QRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRV 247 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V----~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v 247 (264)
....+|||+|||+++|+++|+++|++ ||.| ..|.|+.+. ++++|||||+|.+.++|.+|++.|+..++|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~-~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQ-HCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHT-TSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHh-hCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 35589999999999999999999999 6875 689998876 78999999999999999999988999999999999
Q ss_pred eecCC
Q 024696 248 SPSKT 252 (264)
Q Consensus 248 ~~a~~ 252 (264)
..+.+
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98764
No 310
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.65 E-value=9.3e-16 Score=126.83 Aligned_cols=80 Identities=23% Similarity=0.318 Sum_probs=74.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeec
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPS 250 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a 250 (264)
+.++|||+|||.++|+++|+++|++ ||.|.+|+|++|. ++++|||||+|.+.++|.+|++ +|+..+.|+.|++.++
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~-~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSP-AGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHh-hCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 4589999999999999999999999 6999999999876 6899999999999999999998 9999999999999998
Q ss_pred CCCC
Q 024696 251 KTPV 254 (264)
Q Consensus 251 ~~~~ 254 (264)
.+..
T Consensus 93 ~~~~ 96 (213)
T 4f02_A 93 QRDP 96 (213)
T ss_dssp CCCT
T ss_pred cccc
Confidence 7653
No 311
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.1e-15 Score=108.50 Aligned_cols=72 Identities=19% Similarity=0.216 Sum_probs=64.2
Q ss_pred Cce-EEEeCCCCCCCHHH----HHHHhhhcCC-ceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEE
Q 024696 175 SRT-IYCTNIDKKVTQGD----IKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRV 247 (264)
Q Consensus 175 ~~~-l~V~nL~~~~te~~----L~~~F~~~~G-~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v 247 (264)
+.| |||+|||..+++++ |+++|++ || +|.+|. + |+|||+|.+.++|.+|++ |+|.++.|++|+|
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~-yGG~Vl~Vt-----g---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDN-CGGKVLSIT-----G---CSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHT-TTCCEEECC-----T---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHH-cCCeeEEEe-----c---CEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 355 99999999999988 5589999 85 999992 2 799999999999999998 9999999999999
Q ss_pred eecCCCCC
Q 024696 248 SPSKTPVR 255 (264)
Q Consensus 248 ~~a~~~~~ 255 (264)
+||+....
T Consensus 79 ~~A~~~sd 86 (96)
T 2diu_A 79 SFTPKNRE 86 (96)
T ss_dssp ESSCCSCC
T ss_pred EecCCCcc
Confidence 99988754
No 312
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=2e-16 Score=119.71 Aligned_cols=79 Identities=22% Similarity=0.183 Sum_probs=70.7
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCe----eEEEEecCCC-CCceEEEEEecCHHHHHHHHHhcCCCCCCcceEE
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQV----VDCRICGDPN-SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRV 149 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I----~~v~i~~~~~-~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V 149 (264)
.....+|||+|||+++|+++|+++|++||.| ..|.++.+.. .++|||||+|.+.++|++|++.+++.++|+.|.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V 99 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIEL 99 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEE
Confidence 3567899999999999999999999999975 6899988753 5789999999999999999988999999999999
Q ss_pred eecC
Q 024696 150 LPSK 153 (264)
Q Consensus 150 ~~s~ 153 (264)
..+.
T Consensus 100 ~~a~ 103 (123)
T 2dha_A 100 FRST 103 (123)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8863
No 313
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=1.1e-16 Score=116.67 Aligned_cols=79 Identities=15% Similarity=0.194 Sum_probs=69.9
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEeec
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 152 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~--~~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~s 152 (264)
....++|||+|||+++|+++|+++|+.||.|.. .++.+. +.++|||||+|.+.++|.+|++||+..+.|++|+|.++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKP 92 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEc
Confidence 445789999999999999999999999999877 445443 35789999999999999999999999999999999998
Q ss_pred CC
Q 024696 153 KT 154 (264)
Q Consensus 153 ~~ 154 (264)
+.
T Consensus 93 ~~ 94 (101)
T 1fj7_A 93 KG 94 (101)
T ss_dssp SC
T ss_pred CC
Confidence 53
No 314
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.64 E-value=2.9e-16 Score=111.72 Aligned_cols=73 Identities=18% Similarity=0.166 Sum_probs=67.6
Q ss_pred CCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecCC
Q 024696 77 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKT 154 (264)
Q Consensus 77 ~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~ 154 (264)
..++|||+|||+++++++|+++|++| +|.++.+. .++|||||+|.+.++|.+|++ +|+..+.|++|+|.++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 56789999999999999999999999 99999885 456899999999999999998 999999999999999854
No 315
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.64 E-value=1.2e-16 Score=123.43 Aligned_cols=80 Identities=23% Similarity=0.213 Sum_probs=71.2
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEeec
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPS 152 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~-~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~s 152 (264)
.+...++|||+|||+++|+++|+++|++|| |.+|.++.|+. .++|||||+|.+.++|++|+++|+..+.|+.|.|..+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLN 120 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEEC
Confidence 345678899999999999999999999999 67999998764 6789999999999999999999999999999999987
Q ss_pred CC
Q 024696 153 KT 154 (264)
Q Consensus 153 ~~ 154 (264)
..
T Consensus 121 ~~ 122 (139)
T 2hgn_A 121 ST 122 (139)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 316
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5.3e-16 Score=111.37 Aligned_cols=76 Identities=22% Similarity=0.249 Sum_probs=67.3
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCC-eeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcC-CCCCCcceEEee
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQ-VVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAG-TMLGFYPVRVLP 151 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~-I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~-~~~~g~~l~V~~ 151 (264)
+...++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++ ||+ ..+.|++|+|.+
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 456789999999999999999999999999 6666653 34899999999999999998 999 899999999999
Q ss_pred cCCC
Q 024696 152 SKTA 155 (264)
Q Consensus 152 s~~~ 155 (264)
++..
T Consensus 80 a~~~ 83 (93)
T 2cqh_A 80 SVSK 83 (93)
T ss_dssp CCCC
T ss_pred ccCc
Confidence 8643
No 317
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.64 E-value=2e-15 Score=123.15 Aligned_cols=120 Identities=21% Similarity=0.225 Sum_probs=88.8
Q ss_pred CHHHHHHHHH-h--cCCCCCCcceEEeecCCCCCCCCCCCCCCC--ccccccCCceEEEeCCCCCCCHHHHHHHhhhcCC
Q 024696 127 DEEGARAALS-L--AGTMLGFYPVRVLPSKTAIAPVNPTFLPRS--EDEREMCSRTIYCTNIDKKVTQGDIKLFFESVCG 201 (264)
Q Consensus 127 ~~~~a~~Ai~-l--~~~~~~g~~l~V~~s~~~~~~~~~~~~~~~--~~~~~~~~~~l~V~nL~~~~te~~L~~~F~~~~G 201 (264)
+.+.+..|+. . ....+.+....|..... .+ .|.. ........++|||+|||..+++++|+++|++ ||
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~-----~p--~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~-~G 134 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPS-----KP--LPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLED-KG 134 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTT-----SC--CCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTT-SC
T ss_pred CHHHHHHHHhhcccceEEEecccceEEeccc-----CC--CcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhc-CC
Confidence 5677777776 4 23334444455554311 01 1111 0112234589999999999999999999999 69
Q ss_pred ceEEEEEeccC-CCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecCCCC
Q 024696 202 EVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKTPV 254 (264)
Q Consensus 202 ~V~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~a~~~~ 254 (264)
.|..|+++++. +.++|||||+|.+.++|.+|++..+..+.|++|.|.+++.-.
T Consensus 135 ~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~y~ 188 (193)
T 2voo_A 135 QVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDYF 188 (193)
T ss_dssp CEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTTC-
T ss_pred CEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHHHH
Confidence 99999999876 779999999999999999999944569999999999987643
No 318
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.64 E-value=1.7e-15 Score=119.35 Aligned_cols=79 Identities=20% Similarity=0.156 Sum_probs=69.9
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCC--cceEEee
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGF--YPVRVLP 151 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g--~~l~V~~ 151 (264)
+....+|||+||++++|+++|+++|++||+|.+|.+..+. ++|||||+|.+.++|.+|++ |||..+.| ++|+|++
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~--~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN--NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS--SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 3344569999999999999999999999999999997553 45899999999999999998 99999955 9999999
Q ss_pred cCCC
Q 024696 152 SKTA 155 (264)
Q Consensus 152 s~~~ 155 (264)
++..
T Consensus 121 Ak~~ 124 (164)
T 1sjr_A 121 SKLT 124 (164)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 9754
No 319
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.63 E-value=1.6e-15 Score=123.03 Aligned_cols=81 Identities=17% Similarity=0.249 Sum_probs=73.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecC
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSK 251 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~a~ 251 (264)
..++|||+|||.++|+++|+++|++ ||.|.+|.++.++ +.++|||||+|.+.++|.+|++.++..+.|+.|.|.++.
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~~ 90 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQ-WGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAV 90 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGG-GSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHh-CCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeeccc
Confidence 4589999999999999999999999 6999999999875 678999999999999999999989999999999999997
Q ss_pred CCCC
Q 024696 252 TPVR 255 (264)
Q Consensus 252 ~~~~ 255 (264)
+...
T Consensus 91 ~~~~ 94 (196)
T 1l3k_A 91 SRED 94 (196)
T ss_dssp C---
T ss_pred Cccc
Confidence 7644
No 320
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.63 E-value=1.1e-15 Score=121.39 Aligned_cols=79 Identities=18% Similarity=0.291 Sum_probs=73.1
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEe
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 150 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~--~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~ 150 (264)
.....++|||+|||+++|+++|+++|++||.|..+.+..++ +.++|||||+|.+.++|.+|++ |||..++|++|.|.
T Consensus 90 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 169 (172)
T 2g4b_A 90 PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQ 169 (172)
T ss_dssp CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34557899999999999999999999999999999999985 3568999999999999999998 99999999999999
Q ss_pred ec
Q 024696 151 PS 152 (264)
Q Consensus 151 ~s 152 (264)
++
T Consensus 170 ~A 171 (172)
T 2g4b_A 170 RA 171 (172)
T ss_dssp EC
T ss_pred eC
Confidence 87
No 321
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.63 E-value=6.1e-16 Score=129.49 Aligned_cols=77 Identities=18% Similarity=0.272 Sum_probs=71.1
Q ss_pred CCcEEEEcCCCCcCCHHHHHHHhhcCC--CeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEee
Q 024696 77 IRRTVYVSDIDQQVTEEQLATLFLTCG--QVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 151 (264)
Q Consensus 77 ~~~~v~V~nLp~~~te~~L~~~F~~~G--~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~ 151 (264)
..++|||+|||+++|+++|+++|+.|| .|.+|+|+.|+. .++|||||+|.+.++|.+|++ ||+..|.|++|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999864 578999999999999999998 999999999999999
Q ss_pred cC
Q 024696 152 SK 153 (264)
Q Consensus 152 s~ 153 (264)
++
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 322
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=7.2e-16 Score=114.62 Aligned_cols=75 Identities=16% Similarity=0.257 Sum_probs=67.5
Q ss_pred CCCcEEEE--cCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCC-----CCcce
Q 024696 76 VIRRTVYV--SDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTML-----GFYPV 147 (264)
Q Consensus 76 ~~~~~v~V--~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~-----~g~~l 147 (264)
..+++||| +||++++++++|+++|++||.|.+|.+..+ +|||||+|.+.++|++|++ |||..+ .|++|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l 98 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence 45678999 779999999999999999999999988754 4899999999999999998 999987 68999
Q ss_pred EEeecCC
Q 024696 148 RVLPSKT 154 (264)
Q Consensus 148 ~V~~s~~ 154 (264)
.|.++..
T Consensus 99 ~v~~a~~ 105 (114)
T 2cq2_A 99 YLNFVEK 105 (114)
T ss_dssp EEEEESC
T ss_pred EEEeccc
Confidence 9999853
No 323
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.63 E-value=9.3e-16 Score=115.80 Aligned_cols=78 Identities=21% Similarity=0.249 Sum_probs=69.2
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 251 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~ 251 (264)
..+++|||+|+ ++++++|+++|++ ||.|..|.+. .++|||||+|.+.++|.+|++ |||..+.|++|+|.|++
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~-~G~I~~v~i~----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSP-FGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHST-TCCCSCEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHc-cCCEEEEEEe----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 45689999996 6999999999999 6999999996 456799999999999999998 99999999999999999
Q ss_pred CCCCCC
Q 024696 252 TPVRPR 257 (264)
Q Consensus 252 ~~~~~~ 257 (264)
++....
T Consensus 110 ~~~~~~ 115 (121)
T 2bz2_A 110 KQPMLD 115 (121)
T ss_dssp SSCC--
T ss_pred CCCCCC
Confidence 875443
No 324
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.63 E-value=1.9e-15 Score=124.39 Aligned_cols=76 Identities=20% Similarity=0.235 Sum_probs=70.6
Q ss_pred CCceEEEeCCC-CCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 024696 174 CSRTIYCTNID-KKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 251 (264)
Q Consensus 174 ~~~~l~V~nL~-~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~ 251 (264)
++++|||+||| ..+++++|+++|++ ||.|.+|+++++. +|||||+|.+.++|..|++ |||..+.|++|+|.+++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~-~G~v~~v~i~~~~---~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~ 78 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCL-YGNVEKVKFMKSK---PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSK 78 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTT-TSCEEEEEECTTS---TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHh-cCCeEEEEEecCC---CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 46899999999 79999999999999 7999999998763 6899999999999999998 99999999999999997
Q ss_pred CC
Q 024696 252 TP 253 (264)
Q Consensus 252 ~~ 253 (264)
..
T Consensus 79 ~~ 80 (205)
T 3tyt_A 79 QP 80 (205)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 325
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.62 E-value=1.3e-15 Score=121.03 Aligned_cols=80 Identities=20% Similarity=0.245 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
...++|||+|||+.+++++|+++|+.||.|..|.++.+.. .++|||||+|.+.++|.+|++ |||..+.|++|.|.++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4457799999999999999999999999999999998864 468999999999999999998 9999999999999998
Q ss_pred CCC
Q 024696 153 KTA 155 (264)
Q Consensus 153 ~~~ 155 (264)
...
T Consensus 150 ~~~ 152 (165)
T 1rk8_A 150 FVK 152 (165)
T ss_dssp EEC
T ss_pred cCC
Confidence 643
No 326
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.62 E-value=2.4e-16 Score=115.20 Aligned_cols=78 Identities=19% Similarity=0.376 Sum_probs=71.6
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEeecC
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 153 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~-~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~s~ 153 (264)
+...++|||+|||+++++++|+++|+.||.|.++.++.++. .++|||||+|.+.++|.+|++ ++..+.|++|.|.++.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence 34568899999999999999999999999999999999873 468999999999999999999 9999999999999975
No 327
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=1.9e-15 Score=110.27 Aligned_cols=79 Identities=28% Similarity=0.324 Sum_probs=69.0
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEe
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 150 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~--~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~ 150 (264)
.+...++|||+|||+++++++|+++|+.|+ .+.++.+. +.++|||||+|.+.++|.+|++ |++..+.|++|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 455678999999999999999999999874 56666665 3568999999999999999998 99999999999999
Q ss_pred ecCCC
Q 024696 151 PSKTA 155 (264)
Q Consensus 151 ~s~~~ 155 (264)
+++..
T Consensus 88 ~a~~~ 92 (102)
T 2fc8_A 88 WAKPK 92 (102)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 98643
No 328
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.62 E-value=1.6e-15 Score=115.30 Aligned_cols=77 Identities=22% Similarity=0.218 Sum_probs=68.8
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceE-EEEEecCHHHHHHHHH-hcCCCCCC--cceEEee
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRF-AFVEFTDEEGARAALS-LAGTMLGF--YPVRVLP 151 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~-afV~F~~~~~a~~Ai~-l~~~~~~g--~~l~V~~ 151 (264)
..-..|||+||++.+|+++|+++|++||+|.+|.+..+. +|+ |||+|.+.++|..|++ |||..+.| ++|+|++
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~---~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ 102 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 102 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET---TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC---CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEe
Confidence 344568999999999999999999999999999988654 377 9999999999999998 99999977 8999999
Q ss_pred cCCC
Q 024696 152 SKTA 155 (264)
Q Consensus 152 s~~~ 155 (264)
++..
T Consensus 103 ak~~ 106 (130)
T 3zzy_A 103 SKLT 106 (130)
T ss_dssp CSCS
T ss_pred cCCC
Confidence 9754
No 329
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.62 E-value=1.6e-15 Score=122.00 Aligned_cols=80 Identities=21% Similarity=0.248 Sum_probs=73.5
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecC
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP-NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 153 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~ 153 (264)
...++|||+|||+++++++|+++|+.||+|..|.+..+. +.++|||||+|.+.++|.+|++ +++..+.|++|.|.++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 345789999999999999999999999999999999887 3568999999999999999998 99999999999999985
Q ss_pred CC
Q 024696 154 TA 155 (264)
Q Consensus 154 ~~ 155 (264)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 43
No 330
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.62 E-value=9e-16 Score=109.52 Aligned_cols=73 Identities=29% Similarity=0.412 Sum_probs=62.0
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCCC--CCCcceEEeec
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTM--LGFYPVRVLPS 152 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~l~~~~--~~g~~l~V~~s 152 (264)
.....+|||+|||+++|+++|+++|++||.|.++.++.+ ++|||||+|.+.++|.+ +++.. +.|++|.|.++
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~---srGfaFV~F~~~~~A~~---~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP---FRAFAFVTFADDKVAQS---LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS---CCSEEEEEESCHHHHHH---HTTCEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC---CCCEEEEEECCHHHHHH---HcCCCcccCCEEEEEEEc
Confidence 456789999999999999999999999999999999986 56999999999999984 34444 56999999998
Q ss_pred C
Q 024696 153 K 153 (264)
Q Consensus 153 ~ 153 (264)
.
T Consensus 82 ~ 82 (89)
T 3d2w_A 82 E 82 (89)
T ss_dssp C
T ss_pred C
Confidence 5
No 331
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.61 E-value=1.8e-15 Score=113.20 Aligned_cols=73 Identities=22% Similarity=0.211 Sum_probs=65.6
Q ss_pred CCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcc-----eEEe
Q 024696 77 IRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYP-----VRVL 150 (264)
Q Consensus 77 ~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~-----l~V~ 150 (264)
..++|||+|||+++++++|+++|++||+|..+.++.+ |||||+|.+.++|.+|++ ||+..+.|++ ++|.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 4678999999999999999999999999999999877 799999999999999998 9999999998 6776
Q ss_pred ecCC
Q 024696 151 PSKT 154 (264)
Q Consensus 151 ~s~~ 154 (264)
.+..
T Consensus 90 ~~~~ 93 (115)
T 3beg_B 90 VDGP 93 (115)
T ss_dssp ECC-
T ss_pred cCCC
Confidence 6543
No 332
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.61 E-value=1.3e-15 Score=107.85 Aligned_cols=72 Identities=26% Similarity=0.439 Sum_probs=66.9
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhcC----C-------CeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCCCCCC
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLTC----G-------QVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGF 144 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~~----G-------~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~l~~~~~~g 144 (264)
...++|||+|||+++++++|+++|++| | .|.++.+..+ +|||||+|.+.++|.+|+++|+..+.|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~----kg~afV~f~~~~~a~~A~~l~g~~~~g 79 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAMAFDGIIFQG 79 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS----SSEEEEEESSHHHHHHHGGGTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC----CcEEEEEcCCHHHHHHHHhcCCCEECC
Confidence 457899999999999999999999999 8 9999999866 389999999999999999999999999
Q ss_pred cceEEee
Q 024696 145 YPVRVLP 151 (264)
Q Consensus 145 ~~l~V~~ 151 (264)
++|+|++
T Consensus 80 ~~l~V~r 86 (87)
T 2hzc_A 80 QSLKIRR 86 (87)
T ss_dssp EECEEEC
T ss_pred eEEEEeC
Confidence 9999975
No 333
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=6.2e-15 Score=106.66 Aligned_cols=76 Identities=24% Similarity=0.297 Sum_probs=68.0
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
.....++|||+|+ ++|+++|+++|++||+|.+|.+. .++|||||+|.+.++|.+|++ |++..+.|++|+|.++
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 3456789999996 89999999999999999999985 345899999999999999997 9999999999999998
Q ss_pred CCC
Q 024696 153 KTA 155 (264)
Q Consensus 153 ~~~ 155 (264)
+..
T Consensus 85 ~~~ 87 (97)
T 1x5p_A 85 RKQ 87 (97)
T ss_dssp SSC
T ss_pred CCC
Confidence 643
No 334
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.61 E-value=6.6e-16 Score=119.84 Aligned_cols=80 Identities=23% Similarity=0.273 Sum_probs=69.7
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEE--------EEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCc
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDC--------RICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFY 145 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v--------~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~ 145 (264)
....++|||+|||+++|+++|+++|+.||.|..+ .+. ..+.++|||||+|.+.++|.+|++ |||..+.|+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~-~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM-KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE-EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec-cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 4456889999999999999999999999998764 333 235678999999999999999998 999999999
Q ss_pred ceEEeecCCC
Q 024696 146 PVRVLPSKTA 155 (264)
Q Consensus 146 ~l~V~~s~~~ 155 (264)
+|.|.+++..
T Consensus 121 ~l~V~~a~~~ 130 (143)
T 3egn_A 121 PMVVQFARSA 130 (143)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999998644
No 335
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.40 E-value=4.7e-17 Score=121.84 Aligned_cols=81 Identities=25% Similarity=0.349 Sum_probs=73.7
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeE--------EEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCC
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVD--------CRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTML 142 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~--------v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~ 142 (264)
+....++|||+|||+++++++|+++|+.||.|.. +.++.++. .++|||||+|.+.++|.+|++ ||+..+
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 3456789999999999999999999999999998 88888753 568999999999999999998 999999
Q ss_pred CCcceEEeecCC
Q 024696 143 GFYPVRVLPSKT 154 (264)
Q Consensus 143 ~g~~l~V~~s~~ 154 (264)
.|++|+|.+++.
T Consensus 83 ~g~~l~V~~a~~ 94 (116)
T 2lcw_A 83 SGNPIKVSFATR 94 (116)
Confidence 999999999854
No 336
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.61 E-value=4.9e-15 Score=108.95 Aligned_cols=79 Identities=19% Similarity=0.189 Sum_probs=70.3
Q ss_pred cCCceEEEeCCCC-----CCCHHHHHHHhhhcCCceEEEEEeccC---CCceeEEEEEECCHHHHHHHHH-hCCceeCCe
Q 024696 173 MCSRTIYCTNIDK-----KVTQGDIKLFFESVCGEVQRLRLLGDY---QHSTRIAFVEFAMAESAIAALN-CSGAVLGSL 243 (264)
Q Consensus 173 ~~~~~l~V~nL~~-----~~te~~L~~~F~~~~G~V~~v~i~~~~---~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~ 243 (264)
.++++|+|.||.. +-++++|++.|++ ||.|.+|.|++++ ++++|+|||+|.+.++|.+|++ |||..+.|+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~-~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEK-YGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGG-GSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHh-cCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 4568999999973 2378999999999 6999999999875 4689999999999999999998 999999999
Q ss_pred eEEEeecCC
Q 024696 244 PIRVSPSKT 252 (264)
Q Consensus 244 ~l~v~~a~~ 252 (264)
+|+|.++.+
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999865
No 337
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.61 E-value=3.1e-15 Score=105.79 Aligned_cols=71 Identities=23% Similarity=0.443 Sum_probs=65.9
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcC----C-------ceEEEEEeccCCCceeEEEEEECCHHHHHHHHHhCCceeCC
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVC----G-------EVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGS 242 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~----G-------~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g 242 (264)
..++|||+|||.++++++|+++|++ | | .|.++.+.++ +|||||+|.+.++|.+|+.+||..+.|
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~-~~~~~g~~~~~~~~v~~~~~~~~----kg~afV~f~~~~~a~~A~~l~g~~~~g 79 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNA-QMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAMAFDGIIFQG 79 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHH-HHHHTTCCSSSSCSEEEEEECSS----SSEEEEEESSHHHHHHHGGGTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHH-HhhhcccccCCCCcceEEEecCC----CcEEEEEcCCHHHHHHHHhcCCCEECC
Confidence 3589999999999999999999999 7 7 8999999765 579999999999999999999999999
Q ss_pred eeEEEee
Q 024696 243 LPIRVSP 249 (264)
Q Consensus 243 ~~l~v~~ 249 (264)
+.|+|+.
T Consensus 80 ~~l~V~r 86 (87)
T 2hzc_A 80 QSLKIRR 86 (87)
T ss_dssp EECEEEC
T ss_pred eEEEEeC
Confidence 9999974
No 338
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=9.6e-15 Score=110.35 Aligned_cols=74 Identities=20% Similarity=0.172 Sum_probs=66.1
Q ss_pred CcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceE-EEEEecCHHHHHHHHH-hcCCCCCC--cceEEeecC
Q 024696 78 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRF-AFVEFTDEEGARAALS-LAGTMLGF--YPVRVLPSK 153 (264)
Q Consensus 78 ~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~-afV~F~~~~~a~~Ai~-l~~~~~~g--~~l~V~~s~ 153 (264)
...|||+||++.+|+++|+++|++||.|.+|.+... . |+ |||+|.+.++|..|++ |||..+.| ++|+|.+++
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~---Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-N---GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-S---SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-C---CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 344789999999999999999999999999999763 2 85 9999999999999998 99999976 699999987
Q ss_pred CC
Q 024696 154 TA 155 (264)
Q Consensus 154 ~~ 155 (264)
..
T Consensus 101 ~~ 102 (124)
T 2e5i_A 101 PT 102 (124)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 339
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.60 E-value=5.7e-15 Score=121.55 Aligned_cols=82 Identities=20% Similarity=0.369 Sum_probs=75.0
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEee
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 151 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~ 151 (264)
....++|||+|||.++++++|+++|+.||.|..+.+..+.. .++|||||+|.+.++|.+|++ ||+..++|++|.|.+
T Consensus 122 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~ 201 (216)
T 2qfj_A 122 ARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 201 (216)
T ss_dssp HTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEE
T ss_pred cCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEE
Confidence 35568999999999999999999999999999999999853 568999999999999999998 999999999999999
Q ss_pred cCCCC
Q 024696 152 SKTAI 156 (264)
Q Consensus 152 s~~~~ 156 (264)
+....
T Consensus 202 a~~~~ 206 (216)
T 2qfj_A 202 AVTPP 206 (216)
T ss_dssp CSSCS
T ss_pred ecCCC
Confidence 86543
No 340
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.59 E-value=1.2e-14 Score=115.51 Aligned_cols=78 Identities=27% Similarity=0.420 Sum_probs=70.6
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCCCCC---CcceEE
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALS-LAGTMLG---FYPVRV 149 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~-~s~G~afV~F~~~~~a~~Ai~-l~~~~~~---g~~l~V 149 (264)
....++|||+|||+++|+++|+++|+.||.|.++.+..+.. .++|||||+|.+.++|.+|++ |||..+. |++|.|
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 34678899999999999999999999999999999998864 568999999999999999997 9998765 499999
Q ss_pred eec
Q 024696 150 LPS 152 (264)
Q Consensus 150 ~~s 152 (264)
.++
T Consensus 172 ~~a 174 (175)
T 3nmr_A 172 KFA 174 (175)
T ss_dssp EEC
T ss_pred Eec
Confidence 986
No 341
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=5.9e-15 Score=104.83 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=61.4
Q ss_pred cEEEEcCCCCcCCHHH----HHHHhhcC-CCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 79 RTVYVSDIDQQVTEEQ----LATLFLTC-GQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 79 ~~v~V~nLp~~~te~~----L~~~F~~~-G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
..|||+|||+++++++ |+++|++| |+|.+|. . |+|||+|.+.++|.+|++ |+|..+.||+|+|.++
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt-----g---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A 81 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT-----G---CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFT 81 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC-----T---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESS
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe-----c---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEec
Confidence 3499999999999988 55899999 5999881 1 899999999999999998 9999999999999998
Q ss_pred CCC
Q 024696 153 KTA 155 (264)
Q Consensus 153 ~~~ 155 (264)
+..
T Consensus 82 ~~~ 84 (96)
T 2diu_A 82 PKN 84 (96)
T ss_dssp CCS
T ss_pred CCC
Confidence 643
No 342
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=7.7e-15 Score=109.44 Aligned_cols=75 Identities=17% Similarity=0.234 Sum_probs=62.3
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC-----CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceE
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN-----SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVR 148 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~-----~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~ 148 (264)
....++|||+|||+++|+++|+++|++||+|. +.++.+.. .++|||||+|.+.++|++|++ +++ +.|+.+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEE
Confidence 34678999999999999999999999999999 78877653 568999999999999999998 732 5555555
Q ss_pred Eeec
Q 024696 149 VLPS 152 (264)
Q Consensus 149 V~~s 152 (264)
+..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 5543
No 343
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.58 E-value=1e-15 Score=139.56 Aligned_cols=80 Identities=19% Similarity=0.250 Sum_probs=73.7
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeec
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN--SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPS 152 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s 152 (264)
...++|||+|||+.+|+++|.++|+.||.|..|.|+.+.. .++|||||+|.+.++|.+|++ |||..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 4567999999999999999999999999999999998853 568999999999999999997 9999999999999998
Q ss_pred CCC
Q 024696 153 KTA 155 (264)
Q Consensus 153 ~~~ 155 (264)
...
T Consensus 180 ~~~ 182 (437)
T 3pgw_S 180 RGR 182 (437)
T ss_pred CCC
Confidence 653
No 344
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.2e-15 Score=107.01 Aligned_cols=75 Identities=24% Similarity=0.321 Sum_probs=64.1
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEeecCC
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSKT 154 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~s~~ 154 (264)
...++|||+|||+++++++|+++|++||+|.++.++.+ ++|||||+|.+.++|++|... ...+.|++|.|.++..
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP---FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS---CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC---CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCC
Confidence 35689999999999999999999999999999999876 459999999999999865432 3345899999999853
No 345
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.58 E-value=2.2e-15 Score=119.07 Aligned_cols=78 Identities=13% Similarity=0.232 Sum_probs=72.6
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEecCHHHHHHHHHhcCCCCCCcceEEeecC
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRVLPSK 153 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~--~~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V~~s~ 153 (264)
...++|||+|||+++++++|+++|+.||.|.++.+..++ +.++|||||+|.+.++|.+|+++++..+.|++|.|.++.
T Consensus 85 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 85 DKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECC
T ss_pred cCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecC
Confidence 456789999999999999999999999999999999886 357899999999999999999999999999999999985
No 346
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.57 E-value=1e-14 Score=110.01 Aligned_cols=76 Identities=24% Similarity=0.304 Sum_probs=67.8
Q ss_pred ccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEee
Q 024696 73 QDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 151 (264)
Q Consensus 73 ~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~ 151 (264)
..+...++|||+|+ ++|+++|+++|+.||.|.+|.+. .++|||||+|.+.++|.+|++ |++..+.|++|+|.+
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34456789999995 69999999999999999999996 345899999999999999997 999999999999999
Q ss_pred cCC
Q 024696 152 SKT 154 (264)
Q Consensus 152 s~~ 154 (264)
++.
T Consensus 108 a~~ 110 (121)
T 2bz2_A 108 ARK 110 (121)
T ss_dssp CCS
T ss_pred eCC
Confidence 864
No 347
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=1.6e-14 Score=107.77 Aligned_cols=71 Identities=15% Similarity=0.201 Sum_probs=59.2
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC-----CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEE
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY-----QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRV 247 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~-----~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v 247 (264)
..++|||+|||..+++++|+++|++ ||.|. +.++.+. |+++|||||+|.+.++|++|++ ++ .+.|+.+.+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~-~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRR-FGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTT-TCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHh-cCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 4589999999999999999999999 69999 8777764 4789999999999999999998 72 244444444
Q ss_pred e
Q 024696 248 S 248 (264)
Q Consensus 248 ~ 248 (264)
.
T Consensus 83 ~ 83 (114)
T 2dnl_A 83 V 83 (114)
T ss_dssp E
T ss_pred c
Confidence 4
No 348
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.55 E-value=1.2e-14 Score=109.04 Aligned_cols=77 Identities=18% Similarity=0.306 Sum_probs=68.0
Q ss_pred ceEEEeCC----CCCCCHHHHHHHhhhcCCceEEEEEeccC--CCceeEEEEEECC----HHH----HHHHHH---hCCc
Q 024696 176 RTIYCTNI----DKKVTQGDIKLFFESVCGEVQRLRLLGDY--QHSTRIAFVEFAM----AES----AIAALN---CSGA 238 (264)
Q Consensus 176 ~~l~V~nL----~~~~te~~L~~~F~~~~G~V~~v~i~~~~--~~~~g~afV~f~~----~~~----A~~Ai~---l~g~ 238 (264)
..|||+|| |+.+++++|+++|++ ||+|.++.++.|+ |.++|||||+|.| +++ |.+|+. ++|.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~-fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKK-YGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHT-TSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHh-cCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 68999999 999999999999999 7999999999998 7899999999996 433 788875 6999
Q ss_pred eeCCeeEEEeecCCC
Q 024696 239 VLGSLPIRVSPSKTP 253 (264)
Q Consensus 239 ~~~g~~l~v~~a~~~ 253 (264)
.+.|++|+|.+.+..
T Consensus 82 ~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 82 FIMGFKFEVILNKHS 96 (136)
T ss_dssp EETTEEEEEEECCTT
T ss_pred eecCcEEEEEECccc
Confidence 999999999986653
No 349
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.55 E-value=1.3e-14 Score=117.87 Aligned_cols=80 Identities=18% Similarity=0.307 Sum_probs=73.9
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEee
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDP--NSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLP 151 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~--~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~ 151 (264)
....++|||+|||+++++++|+++|+.||.|..+.+..+. +.++|||||+|.+.++|.+|++ |+|..+.|++|.|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3567899999999999999999999999999999999985 3568999999999999999998 999999999999999
Q ss_pred cCC
Q 024696 152 SKT 154 (264)
Q Consensus 152 s~~ 154 (264)
++.
T Consensus 191 a~~ 193 (198)
T 2yh0_A 191 ASV 193 (198)
T ss_dssp SCC
T ss_pred CCC
Confidence 853
No 350
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.55 E-value=9.7e-15 Score=122.31 Aligned_cols=81 Identities=23% Similarity=0.372 Sum_probs=68.9
Q ss_pred cCCceEEEeCCCCCC---------CHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCcee--
Q 024696 173 MCSRTIYCTNIDKKV---------TQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVL-- 240 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~---------te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~-- 240 (264)
...++|||+||+..+ ++++|+++|++ ||.|++|+++.+ +|||||+|.+.++|+.|++ |+|..+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~-fG~I~~v~v~~~----kG~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSR-LGDIDRIRYVES----KNCGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHT-TSCEEEEEEEGG----GTEEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHc-cCCEEEEEEECC----CCEEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 356999999999998 79999999999 699999999865 5799999999999999998 999999
Q ss_pred ----------CCeeEEEeecCCCCCCCC
Q 024696 241 ----------GSLPIRVSPSKTPVRPRA 258 (264)
Q Consensus 241 ----------~g~~l~v~~a~~~~~~~~ 258 (264)
.|+.|.|+||++.+.|..
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~~~pnp~~ 234 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWANEDPDPAA 234 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC-------
T ss_pred cccccccccCCCCEEEEEEccCCCCHHH
Confidence 899999999998766554
No 351
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.55 E-value=2.6e-14 Score=119.39 Aligned_cols=78 Identities=27% Similarity=0.411 Sum_probs=72.7
Q ss_pred ccCCceEEEeCCCC-CCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEee
Q 024696 172 EMCSRTIYCTNIDK-KVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSP 249 (264)
Q Consensus 172 ~~~~~~l~V~nL~~-~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~ 249 (264)
.+++++|||+|||. .+++++|+++|++ ||.|.+|++.++. +|||||+|.+.++|.+|++ +||..+.|+.|+|.+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~-~G~i~~v~i~~~~---~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGV-YGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHH-HTCEEEEEECCTT---SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHh-CCCeEEEEEEECC---CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45679999999999 9999999999999 6999999999875 6799999999999999998 999999999999999
Q ss_pred cCCC
Q 024696 250 SKTP 253 (264)
Q Consensus 250 a~~~ 253 (264)
+++.
T Consensus 107 a~~~ 110 (229)
T 2adc_A 107 SKHQ 110 (229)
T ss_dssp CSCC
T ss_pred ecCc
Confidence 9866
No 352
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.55 E-value=2.6e-14 Score=105.07 Aligned_cols=79 Identities=22% Similarity=0.208 Sum_probs=69.5
Q ss_pred CCCCcEEEEcCCCC-----cCCHHHHHHHhhcCCCeeEEEEecCCC---CCceEEEEEecCHHHHHHHHH-hcCCCCCCc
Q 024696 75 EVIRRTVYVSDIDQ-----QVTEEQLATLFLTCGQVVDCRICGDPN---SVLRFAFVEFTDEEGARAALS-LAGTMLGFY 145 (264)
Q Consensus 75 ~~~~~~v~V~nLp~-----~~te~~L~~~F~~~G~I~~v~i~~~~~---~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~ 145 (264)
+..+++|+|.|+.. +-++++|++.|++||.|.+|.++.+++ .++|+|||+|.+.++|.+|++ |||..+.||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34678999999963 237899999999999999999998753 468999999999999999998 999999999
Q ss_pred ceEEeecC
Q 024696 146 PVRVLPSK 153 (264)
Q Consensus 146 ~l~V~~s~ 153 (264)
+|.|.++.
T Consensus 85 ~i~v~~a~ 92 (105)
T 2pe8_A 85 VVKACFYN 92 (105)
T ss_dssp ECEEEECC
T ss_pred EEEEEEcC
Confidence 99999974
No 353
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.54 E-value=2.6e-14 Score=122.70 Aligned_cols=80 Identities=26% Similarity=0.370 Sum_probs=73.4
Q ss_pred cCCceEEEeCCCCCCCHHHHH----HHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEE
Q 024696 173 MCSRTIYCTNIDKKVTQGDIK----LFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRV 247 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~----~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v 247 (264)
..+++|||+|||.++++++|+ ++|++ ||.|..|.+.+ .++++|||||+|.+.++|.+|++ +||..+.|+.|+|
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~-~G~i~~v~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQ-FGQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhc-cCCeEEEEEcC-CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 346999999999999999977 89999 69999999987 46789999999999999999998 9999999999999
Q ss_pred eecCCCC
Q 024696 248 SPSKTPV 254 (264)
Q Consensus 248 ~~a~~~~ 254 (264)
.|+++..
T Consensus 85 ~~a~~~~ 91 (282)
T 3pgw_A 85 QYAKTDS 91 (282)
T ss_pred EEeccCc
Confidence 9997765
No 354
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.53 E-value=1.6e-14 Score=115.08 Aligned_cols=80 Identities=18% Similarity=0.246 Sum_probs=70.7
Q ss_pred ccccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEE
Q 024696 71 AQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRV 149 (264)
Q Consensus 71 ~~~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V 149 (264)
........++|||+|||+++|+++|+++|+.||.|..+ ...+.++|||||+|.+.++|.+|++ |+|..+.|++|.|
T Consensus 92 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 168 (175)
T 1fje_B 92 DSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 168 (175)
T ss_dssp SCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE---CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEE
T ss_pred cccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe---cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 33445567899999999999999999999999998766 4445678999999999999999998 9999999999999
Q ss_pred eecC
Q 024696 150 LPSK 153 (264)
Q Consensus 150 ~~s~ 153 (264)
.++.
T Consensus 169 ~~a~ 172 (175)
T 1fje_B 169 YYTG 172 (175)
T ss_dssp EECS
T ss_pred EecC
Confidence 9985
No 355
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=7.8e-14 Score=103.62 Aligned_cols=81 Identities=20% Similarity=0.249 Sum_probs=69.2
Q ss_pred ccCCceEEEeCCCCCCC-----------HHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCce
Q 024696 172 EMCSRTIYCTNIDKKVT-----------QGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAV 239 (264)
Q Consensus 172 ~~~~~~l~V~nL~~~~t-----------e~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~ 239 (264)
..++++|+|.||....+ +++|+++|++ ||.|..|.| .+. .++|||||+|.+.++|.+|++ |||..
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~-~G~v~~v~i-~~~-~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSK-FGQIRKLLL-FDR-HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGG-TSCCSEEEE-ETT-CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHc-cCCEeEEEE-ecC-CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 34679999999954432 5899999999 799999966 443 478999999999999999998 99999
Q ss_pred eCCeeEEEeecCCCCC
Q 024696 240 LGSLPIRVSPSKTPVR 255 (264)
Q Consensus 240 ~~g~~l~v~~a~~~~~ 255 (264)
+.|++|+|.|+++...
T Consensus 89 ~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 89 FGGRQITAQAWDGTTD 104 (112)
T ss_dssp ETTEECEEEECCSCCC
T ss_pred ECCcEEEEEEeCCCCC
Confidence 9999999999988643
No 356
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.52 E-value=1.4e-14 Score=108.76 Aligned_cols=76 Identities=17% Similarity=0.300 Sum_probs=66.5
Q ss_pred CcEEEEcCC----CCcCCHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEecC----HHH----HHHHHH---hcCC
Q 024696 78 RRTVYVSDI----DQQVTEEQLATLFLTCGQVVDCRICGDPNS--VLRFAFVEFTD----EEG----ARAALS---LAGT 140 (264)
Q Consensus 78 ~~~v~V~nL----p~~~te~~L~~~F~~~G~I~~v~i~~~~~~--s~G~afV~F~~----~~~----a~~Ai~---l~~~ 140 (264)
+..|||+|| |+.+++++|+++|+.||+|.++.++.|+.+ ++|||||+|.+ +++ |.+|+. ++|.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 368999999 999999999999999999999999999974 69999999996 333 788865 6999
Q ss_pred CCCCcceEEeecC
Q 024696 141 MLGFYPVRVLPSK 153 (264)
Q Consensus 141 ~~~g~~l~V~~s~ 153 (264)
.+.|++|+|...+
T Consensus 82 ~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 82 FIMGFKFEVILNK 94 (136)
T ss_dssp EETTEEEEEEECC
T ss_pred eecCcEEEEEECc
Confidence 9999999999853
No 357
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.52 E-value=2.9e-14 Score=119.45 Aligned_cols=77 Identities=21% Similarity=0.249 Sum_probs=69.6
Q ss_pred CCCCcEEEEcCCCCcC---------CHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCC--
Q 024696 75 EVIRRTVYVSDIDQQV---------TEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTML-- 142 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~---------te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~-- 142 (264)
....++|||+|||..+ +|++|+++|++||+|.+|.++.+ +|||||+|.+.++|+.|++ |+|+.+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~----kG~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES----KNCGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG----GTEEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC----CCEEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 4567899999999998 79999999999999999999965 4899999999999999998 999999
Q ss_pred ----------CCcceEEeecCCC
Q 024696 143 ----------GFYPVRVLPSKTA 155 (264)
Q Consensus 143 ----------~g~~l~V~~s~~~ 155 (264)
.|+.|.|.|++..
T Consensus 207 ~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 207 PSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp TTSTTGGGGGGSCCCEEEECC--
T ss_pred cccccccccCCCCEEEEEEccCC
Confidence 8999999998643
No 358
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.51 E-value=2.4e-14 Score=116.50 Aligned_cols=75 Identities=28% Similarity=0.443 Sum_probs=70.7
Q ss_pred CceEEEeCCCC-CCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecCC
Q 024696 175 SRTIYCTNIDK-KVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKT 252 (264)
Q Consensus 175 ~~~l~V~nL~~-~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~~ 252 (264)
+++|||+|||+ .+++++|+++|++ ||.|..|.+..+. +|||||+|.+.++|.+|++ +||..+.|+.|+|.++++
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~-~G~i~~v~i~~~~---~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGV-YGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHT-TCCCSEEECSTTC---SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHh-cCCEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 58999999999 9999999999999 6999999998875 6799999999999999998 999999999999999986
Q ss_pred C
Q 024696 253 P 253 (264)
Q Consensus 253 ~ 253 (264)
.
T Consensus 79 ~ 79 (198)
T 1qm9_A 79 Q 79 (198)
T ss_dssp C
T ss_pred C
Confidence 5
No 359
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.2e-13 Score=102.71 Aligned_cols=79 Identities=20% Similarity=0.169 Sum_probs=67.8
Q ss_pred cCCCCcEEEEcCCCCcCC-----------HHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCC
Q 024696 74 DEVIRRTVYVSDIDQQVT-----------EEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTM 141 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~t-----------e~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~ 141 (264)
.+..+++|+|.||....+ +++|+++|++||.|.+|.+ .++ .++|||||+|.+.++|.+|++ |||..
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~-~~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR-HPDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT-CTTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC-CCCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 456789999999944332 6899999999999999966 443 378999999999999999997 99999
Q ss_pred CCCcceEEeecCC
Q 024696 142 LGFYPVRVLPSKT 154 (264)
Q Consensus 142 ~~g~~l~V~~s~~ 154 (264)
+.|++|.|.++..
T Consensus 89 ~~gr~l~v~~a~~ 101 (112)
T 2dit_A 89 FGGRQITAQAWDG 101 (112)
T ss_dssp ETTEECEEEECCS
T ss_pred ECCcEEEEEEeCC
Confidence 9999999999853
No 360
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.49 E-value=2.1e-14 Score=105.42 Aligned_cols=70 Identities=20% Similarity=0.333 Sum_probs=61.6
Q ss_pred EeCCCCCCCHHHHHHHh------------hhcCCceEEEEEeccC-CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeE
Q 024696 180 CTNIDKKVTQGDIKLFF------------ESVCGEVQRLRLLGDY-QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPI 245 (264)
Q Consensus 180 V~nL~~~~te~~L~~~F------------~~~~G~V~~v~i~~~~-~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l 245 (264)
+.||+..+++++|++.| ++ ||.|.+|.+.++. ++++|||||+|.+.++|.+|++ |||..+.|++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~-~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEK-YGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhcc-CCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 55677777777777666 98 7999999999876 6789999999999999999998 99999999999
Q ss_pred EEeec
Q 024696 246 RVSPS 250 (264)
Q Consensus 246 ~v~~a 250 (264)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 361
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.48 E-value=1e-13 Score=101.90 Aligned_cols=78 Identities=13% Similarity=0.143 Sum_probs=67.9
Q ss_pred CCceEEEeCC--CCCCC--------HHHHHHHhhhcCCceEEEEEeccC----CCceeEEEEEECCHHHHHHHHH-hCCc
Q 024696 174 CSRTIYCTNI--DKKVT--------QGDIKLFFESVCGEVQRLRLLGDY----QHSTRIAFVEFAMAESAIAALN-CSGA 238 (264)
Q Consensus 174 ~~~~l~V~nL--~~~~t--------e~~L~~~F~~~~G~V~~v~i~~~~----~~~~g~afV~f~~~~~A~~Ai~-l~g~ 238 (264)
++++|.+.|+ |..+. +++|++.|++ ||.|.+|.|+++. ++++|+|||+|.+.++|.+|++ |||.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k-~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSK-YGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHT-TSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHc-cCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 5689999998 33443 3789999999 7999999999875 2578999999999999999998 9999
Q ss_pred eeCCeeEEEeecCC
Q 024696 239 VLGSLPIRVSPSKT 252 (264)
Q Consensus 239 ~~~g~~l~v~~a~~ 252 (264)
.++|++|+|.|+.+
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999754
No 362
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=2.8e-13 Score=98.48 Aligned_cols=65 Identities=25% Similarity=0.269 Sum_probs=57.9
Q ss_pred CCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecCCCCC
Q 024696 185 KKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSKTPVR 255 (264)
Q Consensus 185 ~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~~~~~ 255 (264)
..+++++|+++|++ ||.|..|.++ ++++|||||+|.+.++|..|++ +++ +.|++|+|+|+++++.
T Consensus 27 ~~~te~~L~~~F~~-~G~V~~v~i~---~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQK-YGEVLNLVLS---SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHT-TSCEEEEEEE---SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHh-cCCEEEEEEc---cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 56899999999999 7999999998 3578999999999999999998 555 6799999999988854
No 363
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.46 E-value=3.7e-13 Score=114.57 Aligned_cols=76 Identities=22% Similarity=0.340 Sum_probs=70.2
Q ss_pred cCCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 024696 173 MCSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 251 (264)
Q Consensus 173 ~~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~ 251 (264)
...++|||+|||+++|+++|+++|++ ||.|..|.+.++ +|||||+|.+.++|.+|+. +||..+.|+.|+|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~-~G~i~~v~i~~~----kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFER-YGEPSEVFINRD----RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGG-GCCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHh-cCCEEEEEEeCC----CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 45589999999999999999999999 699999999665 5799999999999999998 99999999999999987
Q ss_pred CC
Q 024696 252 TP 253 (264)
Q Consensus 252 ~~ 253 (264)
+.
T Consensus 95 ~~ 96 (261)
T 3sde_A 95 HG 96 (261)
T ss_dssp CS
T ss_pred cC
Confidence 64
No 364
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.43 E-value=5.7e-14 Score=103.06 Aligned_cols=70 Identities=19% Similarity=0.357 Sum_probs=62.4
Q ss_pred EcCCCCcCCHHHHHHHh------------hcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceE
Q 024696 83 VSDIDQQVTEEQLATLF------------LTCGQVVDCRICGDPN-SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVR 148 (264)
Q Consensus 83 V~nLp~~~te~~L~~~F------------~~~G~I~~v~i~~~~~-~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~ 148 (264)
+.|||+.+++++|++.| ++||+|.+|.++++.. .++|||||+|.+.++|.+|++ |||..+.|++|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 66788888888887766 9999999999998764 578999999999999999998 999999999999
Q ss_pred Eeec
Q 024696 149 VLPS 152 (264)
Q Consensus 149 V~~s 152 (264)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 365
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.42 E-value=3.6e-13 Score=98.92 Aligned_cols=78 Identities=17% Similarity=0.117 Sum_probs=67.6
Q ss_pred CCCcEEEEcCC--CCcCC--------HHHHHHHhhcCCCeeEEEEecCCC----CCceEEEEEecCHHHHHHHHH-hcCC
Q 024696 76 VIRRTVYVSDI--DQQVT--------EEQLATLFLTCGQVVDCRICGDPN----SVLRFAFVEFTDEEGARAALS-LAGT 140 (264)
Q Consensus 76 ~~~~~v~V~nL--p~~~t--------e~~L~~~F~~~G~I~~v~i~~~~~----~s~G~afV~F~~~~~a~~Ai~-l~~~ 140 (264)
..++.|.+.|+ |.++. +++|++.|++||+|.+|.++++.. .++|+|||+|.+.++|.+|++ |||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35788999998 44443 478999999999999999998764 368999999999999999998 9999
Q ss_pred CCCCcceEEeecC
Q 024696 141 MLGFYPVRVLPSK 153 (264)
Q Consensus 141 ~~~g~~l~V~~s~ 153 (264)
.+.||+|.|.++.
T Consensus 83 ~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KFANRVVVTKYCD 95 (105)
T ss_dssp EETTEECEEEEEC
T ss_pred EeCCCEEEEEEeC
Confidence 9999999999863
No 366
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.41 E-value=6.4e-13 Score=99.58 Aligned_cols=79 Identities=16% Similarity=0.219 Sum_probs=68.3
Q ss_pred cCCceEEEeCCCC--CC---CHHHHHHHhhhcCCceEEEEEeccC------CCceeEEEEEECCHHHHHHHHH-hCCcee
Q 024696 173 MCSRTIYCTNIDK--KV---TQGDIKLFFESVCGEVQRLRLLGDY------QHSTRIAFVEFAMAESAIAALN-CSGAVL 240 (264)
Q Consensus 173 ~~~~~l~V~nL~~--~~---te~~L~~~F~~~~G~V~~v~i~~~~------~~~~g~afV~f~~~~~A~~Ai~-l~g~~~ 240 (264)
+++++|++.|+-. ++ .++||++.|++ ||.|.+|.|+++. ++++|++||+|.+.++|.+|++ |||..+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k-~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f 96 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGK-FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 96 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTT-TSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhc-cCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 4679999999943 22 36899999999 7999999999874 2467999999999999999998 999999
Q ss_pred CCeeEEEeecCC
Q 024696 241 GSLPIRVSPSKT 252 (264)
Q Consensus 241 ~g~~l~v~~a~~ 252 (264)
.|+.|+|.|+..
T Consensus 97 ~GR~i~v~~~~~ 108 (118)
T 3ue2_A 97 AGRKVVAEVYDQ 108 (118)
T ss_dssp TTEECEEEEECH
T ss_pred CCcEEEEEEcCh
Confidence 999999999753
No 367
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.38 E-value=9.2e-13 Score=98.71 Aligned_cols=77 Identities=16% Similarity=0.163 Sum_probs=67.1
Q ss_pred CCcEEEEcCCC--CcC---CHHHHHHHhhcCCCeeEEEEecCCC------CCceEEEEEecCHHHHHHHHH-hcCCCCCC
Q 024696 77 IRRTVYVSDID--QQV---TEEQLATLFLTCGQVVDCRICGDPN------SVLRFAFVEFTDEEGARAALS-LAGTMLGF 144 (264)
Q Consensus 77 ~~~~v~V~nLp--~~~---te~~L~~~F~~~G~I~~v~i~~~~~------~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g 144 (264)
.+++|++.|+- .++ -+++|++.|++||+|.+|.++.+.. .++|+|||+|.+.++|.+|++ |||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 67899999983 222 3689999999999999999998753 257999999999999999998 99999999
Q ss_pred cceEEeecC
Q 024696 145 YPVRVLPSK 153 (264)
Q Consensus 145 ~~l~V~~s~ 153 (264)
|.|.|.++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999873
No 368
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.36 E-value=1.7e-12 Score=114.17 Aligned_cols=74 Identities=15% Similarity=0.277 Sum_probs=64.4
Q ss_pred cCCceEEEeC--CCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeC---Ce--e
Q 024696 173 MCSRTIYCTN--IDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLG---SL--P 244 (264)
Q Consensus 173 ~~~~~l~V~n--L~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~---g~--~ 244 (264)
.++++|||+| |+..+|+++|+++|++ ||+|.+|.+.. +||||||+|++.++|++|++ |||..+. |+ .
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~-~G~V~~v~~~~----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEK-CGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHT-TSCEEEEECCT----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHh-cCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 4568999999 5788999999999999 79999998865 46899999999999999999 9999883 44 6
Q ss_pred EEEeecC
Q 024696 245 IRVSPSK 251 (264)
Q Consensus 245 l~v~~a~ 251 (264)
|.+.|++
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 8888875
No 369
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.8e-11 Score=88.86 Aligned_cols=63 Identities=21% Similarity=0.231 Sum_probs=55.1
Q ss_pred CcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecCCC
Q 024696 88 QQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSKTA 155 (264)
Q Consensus 88 ~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~~~ 155 (264)
..+++++|+++|++||+|.+|.++. .++|||||+|.+.++|..|++ +++ +.|++|+|.|++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~---~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS---KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES---SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc---CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCC
Confidence 4689999999999999999999984 456999999999999999998 544 67999999998643
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.33 E-value=5.3e-12 Score=93.94 Aligned_cols=76 Identities=17% Similarity=0.143 Sum_probs=65.0
Q ss_pred CCceEEEeCCCCCCC----------HHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCC
Q 024696 174 CSRTIYCTNIDKKVT----------QGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGS 242 (264)
Q Consensus 174 ~~~~l~V~nL~~~~t----------e~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g 242 (264)
++++|.+.|+-..-. ++||++.|++ ||.|.+|.+.++. ++|+|||+|.+.++|.+|++ |||..++|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~k-fG~V~~v~i~~~~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNK-HGGVIHIYVDKNS--AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTT-TTCCSEEEECTTC--TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhc-cCCEEEEEEecCC--CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 458899999854322 3688999999 7999999997764 58999999999999999998 99999999
Q ss_pred eeEEEeecCC
Q 024696 243 LPIRVSPSKT 252 (264)
Q Consensus 243 ~~l~v~~a~~ 252 (264)
+.|+|.|+..
T Consensus 83 R~i~v~~~~~ 92 (114)
T 3s6e_A 83 KMITAAYVPL 92 (114)
T ss_dssp EECEEEEECH
T ss_pred EEEEEEEEcH
Confidence 9999999853
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.32 E-value=3e-12 Score=112.67 Aligned_cols=75 Identities=16% Similarity=0.223 Sum_probs=64.5
Q ss_pred CCCCcEEEEcC--CCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCC---CCc--c
Q 024696 75 EVIRRTVYVSD--IDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTML---GFY--P 146 (264)
Q Consensus 75 ~~~~~~v~V~n--Lp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~---~g~--~ 146 (264)
+..+.+|||+| |++.+||++|+++|++||+|.+|.+.. +||||||+|.+.++|++|++ |||..+ .|+ .
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 45678999999 588999999999999999999988764 45899999999999999998 999886 345 6
Q ss_pred eEEeecC
Q 024696 147 VRVLPSK 153 (264)
Q Consensus 147 l~V~~s~ 153 (264)
+.+.+..
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 7888763
No 372
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.27 E-value=1.4e-11 Score=91.62 Aligned_cols=76 Identities=12% Similarity=0.088 Sum_probs=64.0
Q ss_pred CCCcEEEEcCCCCcC----------CHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCC
Q 024696 76 VIRRTVYVSDIDQQV----------TEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGF 144 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~----------te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g 144 (264)
..++.|.+.|+=..- -+++|++.|++||.|.+|.+.++. ++|+|||+|.+.++|.+|++ |||..+.|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS--AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC--TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC--CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 456778888873221 246789999999999999997654 57999999999999999998 99999999
Q ss_pred cceEEeecC
Q 024696 145 YPVRVLPSK 153 (264)
Q Consensus 145 ~~l~V~~s~ 153 (264)
|.|.|.++.
T Consensus 83 R~i~v~~~~ 91 (114)
T 3s6e_A 83 KMITAAYVP 91 (114)
T ss_dssp EECEEEEEC
T ss_pred EEEEEEEEc
Confidence 999999974
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=3.4e-11 Score=84.69 Aligned_cols=77 Identities=21% Similarity=0.254 Sum_probs=65.8
Q ss_pred cCCceEEEeCCCC----CCCH----HHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHHhCCceeCCee
Q 024696 173 MCSRTIYCTNIDK----KVTQ----GDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLP 244 (264)
Q Consensus 173 ~~~~~l~V~nL~~----~~te----~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~ 244 (264)
++..||+|.-.+. +.-+ .+|.+.|++ ||+|..+++..+. +||+|.+.++|.+|++|||..++|+.
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~-~G~Vi~vr~~~d~------~fVtF~d~~sAlaAi~mnG~~v~Gr~ 77 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFAS-FGEVILIRFVEDK------MWVTFLEGSSALNVLSLNGKELLNRT 77 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHT-TCCEEEEEECSSS------EEEEESSHHHHHHGGGGTTCEETTEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHh-CCCeEEEEEecCC------EEEEECChHHHHHHHhcCCeEeCCeE
Confidence 4568888887762 2333 678999999 7999999998874 89999999999999999999999999
Q ss_pred EEEeecCCCCCC
Q 024696 245 IRVSPSKTPVRP 256 (264)
Q Consensus 245 l~v~~a~~~~~~ 256 (264)
|+|++++|....
T Consensus 78 LkV~lkt~dW~~ 89 (91)
T 2dnr_A 78 ITIALKSPSGPS 89 (91)
T ss_dssp EEEEECCCSSCS
T ss_pred EEEEeCCCCccc
Confidence 999999988654
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=3.6e-10 Score=84.42 Aligned_cols=74 Identities=12% Similarity=0.181 Sum_probs=65.2
Q ss_pred ccCCceEEEeCCCCC-CCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECC-HHHHHHHHH-h--CCceeCCeeEE
Q 024696 172 EMCSRTIYCTNIDKK-VTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAM-AESAIAALN-C--SGAVLGSLPIR 246 (264)
Q Consensus 172 ~~~~~~l~V~nL~~~-~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~-~~~A~~Ai~-l--~g~~~~g~~l~ 246 (264)
.+.+..|+|+||+.. +++++|+++|++ ||.|.+|.+..++. .|||+|.+ .++|.+|+. + ++..+.|..++
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~-~G~V~~Vd~~~g~~----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~ 89 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSN-HGEIKWIDFVRGAK----EGIILFKEKAKEALGKAKDANNGNLQLRNKEVT 89 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCS-SCCEEEEECCTTCS----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHh-cCCEEEEEEecCCC----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEE
Confidence 346799999999999 999999999999 79999999988764 79999999 899999998 7 57889998888
Q ss_pred Eeec
Q 024696 247 VSPS 250 (264)
Q Consensus 247 v~~a 250 (264)
++..
T Consensus 90 ~evL 93 (121)
T 1owx_A 90 WEVL 93 (121)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 7653
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=1.1e-09 Score=81.80 Aligned_cols=72 Identities=15% Similarity=0.049 Sum_probs=64.3
Q ss_pred CCcEEEEcCCCCc-CCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecC-HHHHHHHHH-hc--CCCCCCcceEEee
Q 024696 77 IRRTVYVSDIDQQ-VTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTD-EEGARAALS-LA--GTMLGFYPVRVLP 151 (264)
Q Consensus 77 ~~~~v~V~nLp~~-~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~-~~~a~~Ai~-l~--~~~~~g~~l~V~~ 151 (264)
..+.|+|+||+++ +++++|+++|++||+|..|.+..++. .|||+|.+ +++|..|++ +| +..+.|..+.+..
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK----EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 4577999999999 99999999999999999999998875 79999999 899999997 74 6778898888876
Q ss_pred c
Q 024696 152 S 152 (264)
Q Consensus 152 s 152 (264)
.
T Consensus 93 L 93 (121)
T 1owx_A 93 L 93 (121)
T ss_dssp C
T ss_pred C
Confidence 4
No 376
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=6e-10 Score=78.73 Aligned_cols=74 Identities=16% Similarity=0.206 Sum_probs=63.1
Q ss_pred ccCCceEEEeCCCCC-----CCH----HHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHHhCCceeCC
Q 024696 172 EMCSRTIYCTNIDKK-----VTQ----GDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGS 242 (264)
Q Consensus 172 ~~~~~~l~V~nL~~~-----~te----~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g 242 (264)
.++..||+|.-++.. .-+ .+|.+.|++ ||+|..+++..|. +||+|.+.++|.+|++|||..++|
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~-~G~Vilvr~v~d~------~fVtF~d~~sAl~AI~ldG~~v~G 84 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGS-YGTIVLVRINQGQ------MLVTFADSHSALSVLDVDGMKVKG 84 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHH-HSCCSEEEEETTE------EEEECSCSHHHHHHHHGGGSEETT
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHH-CCCEEEEEEecCc------EEEEEcChHHHHHHHhcCCeeeCC
Confidence 356689999988742 222 568899999 6999999999884 999999999999999999999999
Q ss_pred eeEEEeecCC
Q 024696 243 LPIRVSPSKT 252 (264)
Q Consensus 243 ~~l~v~~a~~ 252 (264)
+.|+|++..|
T Consensus 85 r~L~V~~k~~ 94 (95)
T 1ufw_A 85 RAVKISGPSS 94 (95)
T ss_dssp EEEEEECCCC
T ss_pred eEEEEeccCC
Confidence 9999998654
No 377
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.01 E-value=9.1e-10 Score=77.40 Aligned_cols=71 Identities=25% Similarity=0.297 Sum_probs=59.6
Q ss_pred CcEEEEcCCCC----cCCH----HHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCcceEE
Q 024696 78 RRTVYVSDIDQ----QVTE----EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRV 149 (264)
Q Consensus 78 ~~~v~V~nLp~----~~te----~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V 149 (264)
..||+|.-.|. ++-. .+|.+.|++||+|..+++..++ +||+|.+.++|.+|++|||..+.||.|+|
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~------~fVtF~d~~sAlaAi~mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK------MWVTFLEGSSALNVLSLNGKELLNRTITI 80 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS------EEEEESSHHHHHHGGGGTTCEETTEEEEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC------EEEEECChHHHHHHHhcCCeEeCCeEEEE
Confidence 34666666652 2333 6789999999999999999874 89999999999999999999999999999
Q ss_pred eecCC
Q 024696 150 LPSKT 154 (264)
Q Consensus 150 ~~s~~ 154 (264)
+.+++
T Consensus 81 ~lkt~ 85 (91)
T 2dnr_A 81 ALKSP 85 (91)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 99753
No 378
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.85 E-value=5.4e-09 Score=86.47 Aligned_cols=63 Identities=17% Similarity=0.247 Sum_probs=57.2
Q ss_pred CHHHHHHHhhhcCCceEEEEEeccC------CCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 024696 188 TQGDIKLFFESVCGEVQRLRLLGDY------QHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 251 (264)
Q Consensus 188 te~~L~~~F~~~~G~V~~v~i~~~~------~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~ 251 (264)
.+++|++.|++ ||.|.++.++++. +.++|++||+|.+.++|.+|++ |||..++||+|.+.|..
T Consensus 142 ~~~dl~~e~~~-~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGK-FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTT-TSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHc-cCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 56889999999 7999999998653 3689999999999999999999 99999999999999975
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.80 E-value=4.7e-09 Score=74.16 Aligned_cols=70 Identities=21% Similarity=0.229 Sum_probs=60.1
Q ss_pred CCcEEEEcCCCCc-----CCH----HHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCcce
Q 024696 77 IRRTVYVSDIDQQ-----VTE----EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPV 147 (264)
Q Consensus 77 ~~~~v~V~nLp~~-----~te----~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l 147 (264)
...||+|.-++.+ +-. .+|.+.|++||+|..+++..++ +||+|.+.++|.+|++|+|..+.||.|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~------~fVtF~d~~sAl~AI~ldG~~v~Gr~L 87 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ------MLVTFADSHSALSVLDVDGMKVKGRAV 87 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE------EEEECSCSHHHHHHHHGGGSEETTEEE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc------EEEEEcChHHHHHHHhcCCeeeCCeEE
Confidence 4567888887643 222 5689999999999999999884 999999999999999999999999999
Q ss_pred EEeec
Q 024696 148 RVLPS 152 (264)
Q Consensus 148 ~V~~s 152 (264)
+|+..
T Consensus 88 ~V~~k 92 (95)
T 1ufw_A 88 KISGP 92 (95)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99985
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.78 E-value=1.2e-08 Score=84.40 Aligned_cols=64 Identities=19% Similarity=0.147 Sum_probs=57.2
Q ss_pred CCHHHHHHHhhcCCCeeEEEEecCCC------CCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEeecC
Q 024696 90 VTEEQLATLFLTCGQVVDCRICGDPN------SVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVLPSK 153 (264)
Q Consensus 90 ~te~~L~~~F~~~G~I~~v~i~~~~~------~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~~s~ 153 (264)
-.+++|++.|++||.|.++.++++.. .++|++||+|.+.++|.+|++ |||..+.||.|.+.++.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 35688999999999999999986542 468999999999999999998 99999999999999973
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.51 E-value=7e-07 Score=64.37 Aligned_cols=70 Identities=20% Similarity=0.264 Sum_probs=64.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhhcC-----CceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEe
Q 024696 175 SRTIYCTNIDKKVTQGDIKLFFESVC-----GEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 248 (264)
Q Consensus 175 ~~~l~V~nL~~~~te~~L~~~F~~~~-----G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~ 248 (264)
.++|-+-|||..+++..|+.+.++ | |.+..+.+..|.+ =|+|+|.|..+|.+|.- ++|.+|.|++|++.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~-~~~i~~g~i~KI~L~pDH~----GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQE-EIHINEKDIRKILLVSDFN----GAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHH-HTCCCTTTCSEEEEETTTT----EEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CcEEEEecCCCCCCHHHHHHHHhh-hhccCccceeEEEEecCCC----ceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 488999999999999999999999 8 9999999999984 69999999999999996 99999999999986
Q ss_pred e
Q 024696 249 P 249 (264)
Q Consensus 249 ~ 249 (264)
-
T Consensus 96 T 96 (117)
T 2l9w_A 96 T 96 (117)
T ss_dssp C
T ss_pred C
Confidence 3
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.50 E-value=5.3e-07 Score=65.02 Aligned_cols=73 Identities=14% Similarity=0.139 Sum_probs=67.1
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcC-----CCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhcCCCCCCcceE
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTC-----GQVVDCRICGDPNSVLRFAFVEFTDEEGARAAL-SLAGTMLGFYPVR 148 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~-----G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai-~l~~~~~~g~~l~ 148 (264)
....++|-+-|||..+++..|+.+.+++ |.+..+.+..|- +-|+|+|.|...|.+|. +++|..|.|++|+
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH----~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF----NGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT----TEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC----CceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 3457899999999999999999999999 999999999987 48999999999999997 6999999999999
Q ss_pred Eee
Q 024696 149 VLP 151 (264)
Q Consensus 149 V~~ 151 (264)
+.-
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 865
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.30 E-value=1e-05 Score=57.84 Aligned_cols=90 Identities=17% Similarity=0.165 Sum_probs=73.0
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhc-----CCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCCCCCCcceEE
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLT-----CGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGFYPVRV 149 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~-----~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~l~~~~~~g~~l~V 149 (264)
.+...+|.|.|||.+++++.|.-+|+. =|+|..+.... +-|+|+|.+.+.|++.++...+.+.+.+|.|
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV 78 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTFREPADAERVLAQADHELHGAQLSL 78 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEE
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEEcChHHHHHHhcCCcceecCeEEEE
Confidence 345678999999999999999999986 25888777754 3899999999999999987788899999999
Q ss_pred eecCCCCCCCCCCCCCCCccccccCCceEEEeCCCCCCC
Q 024696 150 LPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKVT 188 (264)
Q Consensus 150 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nL~~~~t 188 (264)
.+... ....++++.+|++.++
T Consensus 79 ~P~~~------------------~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 79 RPAPP------------------RAPARLLLQGLPPGTS 99 (104)
T ss_dssp EECCC------------------CCCCCCCCCSCCCCCC
T ss_pred EcCCC------------------CCcceEeeecCCCCCC
Confidence 88421 1226788888888765
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.98 E-value=3.1e-05 Score=55.52 Aligned_cols=75 Identities=11% Similarity=0.122 Sum_probs=64.0
Q ss_pred CceEEEeCCCCCC-CH----HHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEe
Q 024696 175 SRTIYCTNIDKKV-TQ----GDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVS 248 (264)
Q Consensus 175 ~~~l~V~nL~~~~-te----~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~ 248 (264)
.++|+|.||+..+ .. +.++++|.. |+++......+.-. -..|.|.+.++|.+|.. |++..+.|+.++|=
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~-~~~~~tF~~lkSFR----Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRT-YDKDTTFQYFKSFK----RVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHT-TCSSCEEEEETTTT----EEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHh-hCcCcceeecCcce----EEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 4889999998864 32 567899998 69988888887653 57999999999999998 99999999999999
Q ss_pred ecCCCC
Q 024696 249 PSKTPV 254 (264)
Q Consensus 249 ~a~~~~ 254 (264)
|+.+..
T Consensus 80 Fgq~~~ 85 (104)
T 1wey_A 80 FAQTLH 85 (104)
T ss_dssp CCCCSS
T ss_pred ecCCCC
Confidence 998653
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.94 E-value=0.00015 Score=51.75 Aligned_cols=75 Identities=17% Similarity=0.214 Sum_probs=63.7
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhc----CCceEEEEEeccCCCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEee
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESV----CGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSP 249 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~----~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~ 249 (264)
..++|.|.|||+.++++.|.-+|+.- -|.|+.+.... +-|+|+|.+.+.|++.++...+.+.|.+|.|..
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTFREPADAERVLAQADHELHGAQLSLRP 80 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEEcChHHHHHHhcCCcceecCeEEEEEc
Confidence 45899999999999999999999962 35899998865 379999999999999998668999999999977
Q ss_pred cCCCC
Q 024696 250 SKTPV 254 (264)
Q Consensus 250 a~~~~ 254 (264)
.-+..
T Consensus 81 ~~~~~ 85 (104)
T 2dhx_A 81 APPRA 85 (104)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 54443
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.90 E-value=5.5e-05 Score=53.36 Aligned_cols=58 Identities=19% Similarity=0.240 Sum_probs=49.5
Q ss_pred cCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hc
Q 024696 74 DEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LA 138 (264)
Q Consensus 74 ~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~ 138 (264)
.+.-.+.+++ ++|.++...||.++|+.||.|. |.++.| ..|||.|.+.+.|..|++ ++
T Consensus 12 ~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidD-----TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 12 QPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD-----TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEET-----TEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcC-----CeEEEEecCHHHHHHHHHhcc
Confidence 4455566777 9999999999999999999765 788877 499999999999999998 53
No 387
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.63 E-value=0.0004 Score=49.70 Aligned_cols=73 Identities=12% Similarity=0.072 Sum_probs=62.4
Q ss_pred CCcEEEEcCCCCcC-C----HHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hcCCCCCCcceEEe
Q 024696 77 IRRTVYVSDIDQQV-T----EEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LAGTMLGFYPVRVL 150 (264)
Q Consensus 77 ~~~~v~V~nLp~~~-t----e~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~~~~~~g~~l~V~ 150 (264)
-+.+|+|.||+.++ . .+.++++|..|+++......+.= +-..|.|.++++|.+|.. |++..+.|++++|.
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF----RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF----KRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT----TEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc----eEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 46789999998765 2 26789999999999887777654 478999999999999986 99999999999999
Q ss_pred ecC
Q 024696 151 PSK 153 (264)
Q Consensus 151 ~s~ 153 (264)
++.
T Consensus 80 Fgq 82 (104)
T 1wey_A 80 FAQ 82 (104)
T ss_dssp CCC
T ss_pred ecC
Confidence 986
No 388
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.56 E-value=0.00031 Score=51.70 Aligned_cols=73 Identities=19% Similarity=0.268 Sum_probs=59.8
Q ss_pred CCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcCCCCCC-cceEEeec
Q 024696 75 EVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGF-YPVRVLPS 152 (264)
Q Consensus 75 ~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~l~~~~~~g-~~l~V~~s 152 (264)
.....-|.|-+.|.. .-..+.+.|++||+|.+....... .+-.|.|.+..+|++|+..||..+.| --|-|.+-
T Consensus 21 ~~~~~wVtVFGFp~~-~~~~VL~~F~~~G~Iv~~~~~~~~----NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQA-SASYILLQFAQYGNILKHVMSNTG----NWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp CGGGGEEEEECCCGG-GHHHHHHHHHTTSCEEEEEECSSS----SEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCCCEEEEECCCHH-HHHHHHHHHHhhCcEEEeccCCCC----CeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 345677999999998 577889999999999987763222 49999999999999999999999975 56667663
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.48 E-value=0.00036 Score=49.02 Aligned_cols=65 Identities=14% Similarity=0.184 Sum_probs=54.3
Q ss_pred cEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCC----CCceEEEEEecCHHHHHHHHH-hcCCCCC
Q 024696 79 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPN----SVLRFAFVEFTDEEGARAALS-LAGTMLG 143 (264)
Q Consensus 79 ~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~----~s~G~afV~F~~~~~a~~Ai~-l~~~~~~ 143 (264)
.+|.|++||+.+||+++.+.++....+.....+..+. ..-.-|||.|.+.+++....+ ++|+.|.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4799999999999999999999998877666655442 124789999999999999998 9998863
No 390
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.43 E-value=0.00013 Score=51.57 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=45.5
Q ss_pred cEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hc
Q 024696 79 RTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LA 138 (264)
Q Consensus 79 ~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~ 138 (264)
..+++ ++|.++...||.++|+.||.| .|.++.| ..|||.|.+++.|..|+. ++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD-----TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-----TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET-----TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC-----CeEEEEecCHHHHHHHHHhcc
Confidence 34556 999999999999999999954 4788877 499999999999999998 54
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.35 E-value=0.0018 Score=47.52 Aligned_cols=71 Identities=17% Similarity=0.231 Sum_probs=58.4
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHHhCCceeCC-eeEEEeec
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGS-LPIRVSPS 250 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g-~~l~v~~a 250 (264)
..+.|.|-+.|+.. .+.+.+.|++ ||.|.+..... ..++..|.|.+..+|++|+..||..++| .-|-|.+.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~-~G~Iv~~~~~~----~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQ-YGNILKHVMSN----TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHT-TSCEEEEEECS----SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHh-hCcEEEeccCC----CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 35889999999985 6777888898 69999888732 2359999999999999999999999984 67777774
No 392
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.25 E-value=0.0016 Score=45.71 Aligned_cols=76 Identities=14% Similarity=0.181 Sum_probs=59.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC---C-CceeEEEEEECCHHHHHHHHH-hCCceeCCe-----eE
Q 024696 176 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY---Q-HSTRIAFVEFAMAESAIAALN-CSGAVLGSL-----PI 245 (264)
Q Consensus 176 ~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~---~-~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~-----~l 245 (264)
.+|.|++||+.+||+++.+.++. +..+........+ + ..-.-|+|.|.+.+++....+ ++|+.+-+. +-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~-~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a 80 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQP-MPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPA 80 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCS-CCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcC-cccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeee
Confidence 57899999999999999999998 5888777776644 1 233479999999999999998 999987432 33
Q ss_pred EEeecCC
Q 024696 246 RVSPSKT 252 (264)
Q Consensus 246 ~v~~a~~ 252 (264)
.|++|-.
T Consensus 81 ~VE~AP~ 87 (91)
T 1uw4_A 81 IVEFAPF 87 (91)
T ss_dssp EEEECSS
T ss_pred EEEEcCC
Confidence 5666543
No 393
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.89 E-value=0.00062 Score=61.85 Aligned_cols=65 Identities=17% Similarity=0.258 Sum_probs=49.2
Q ss_pred ccccCCCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhcC
Q 024696 71 AQQDEVIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALSLAG 139 (264)
Q Consensus 71 ~~~~~~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~l~~ 139 (264)
..+.....|+|+|. .|..+++++|.++|++||+|.++.+..+.+ -||.|+|.+.+++..++...+
T Consensus 46 ~~r~~qa~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g---~~~~vef~~~~~~~~~~~~~~ 110 (464)
T 3pq1_A 46 NERREQAQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG---LYAVVEFCQKESIGSLQNGTH 110 (464)
T ss_dssp HHHHHHHHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS---EEEEEECC---CCHHHHSSCC
T ss_pred HHHHHHhcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC---eEEEEEeCCHHHHHHHHhccC
Confidence 33445567889998 799999999999999999999999988766 699999999999998876433
No 394
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.84 E-value=0.0011 Score=49.40 Aligned_cols=74 Identities=15% Similarity=0.213 Sum_probs=56.4
Q ss_pred CcEEEEcCCCCcCCHHHHHHHhhcCCCeeE-EEEecC-----------CC----CCceEEEEEecCHHHHHHHHHhcCCC
Q 024696 78 RRTVYVSDIDQQVTEEQLATLFLTCGQVVD-CRICGD-----------PN----SVLRFAFVEFTDEEGARAALSLAGTM 141 (264)
Q Consensus 78 ~~~v~V~nLp~~~te~~L~~~F~~~G~I~~-v~i~~~-----------~~----~s~G~afV~F~~~~~a~~Ai~l~~~~ 141 (264)
..-|.|-+.|.+ ....+.+.|++||.|.+ +...++ +. ++..+..|+|.+..+|.+|+..||..
T Consensus 7 e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 446889999776 66778999999999876 221110 00 12358899999999999999999999
Q ss_pred CCCcceEEeec
Q 024696 142 LGFYPVRVLPS 152 (264)
Q Consensus 142 ~~g~~l~V~~s 152 (264)
+.|.-|-|.+.
T Consensus 86 i~G~mIGV~Py 96 (132)
T 3p3d_A 86 FNGVLLGVIPY 96 (132)
T ss_dssp ETTEECEEEEC
T ss_pred eCcEEEEEEEC
Confidence 99988888775
No 395
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.52 E-value=0.0082 Score=42.29 Aligned_cols=52 Identities=21% Similarity=0.387 Sum_probs=43.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-h
Q 024696 176 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-C 235 (264)
Q Consensus 176 ~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l 235 (264)
..+++ ++|+.....||.++|++ ||.| .|+.+.|. .|||.|.+++.|..|++ +
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~-fggv-~I~WidDT-----sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSA-FGNI-QISWIDDT-----SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTT-TCSC-CCEEEETT-----EEEEECSCHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhc-cCCE-EEEEEcCC-----eEEEEecCHHHHHHHHHhc
Confidence 56666 99999999999999999 6843 45555554 79999999999999998 5
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.44 E-value=0.0021 Score=45.43 Aligned_cols=65 Identities=14% Similarity=0.161 Sum_probs=48.9
Q ss_pred CcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCC----CceEEEEEecCHHHHHHHHH-hcCCCC
Q 024696 78 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNS----VLRFAFVEFTDEEGARAALS-LAGTML 142 (264)
Q Consensus 78 ~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~----s~G~afV~F~~~~~a~~Ai~-l~~~~~ 142 (264)
+-+|.|+.||+.+||+++.+.++..-++.....+..+.. .-.-|||.|.+.+++....+ .+|..|
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 567999999999999999888887655433222222211 13589999999999999998 898876
No 397
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.04 E-value=0.011 Score=41.78 Aligned_cols=53 Identities=21% Similarity=0.348 Sum_probs=43.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hC
Q 024696 176 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CS 236 (264)
Q Consensus 176 ~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~ 236 (264)
..+++ ++|+.....||.++|++ ||. ..|+.+.|. .|||.|.+++.|..|++ ++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~-fgg-v~I~WidDT-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSA-FGN-IQISWIDDT-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTT-SEE-EEEEEEETT-----EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhc-cCC-EEEEEEcCC-----eEEEEecCHHHHHHHHHhcc
Confidence 45666 99999999999999999 684 445555564 79999999999999998 54
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.94 E-value=0.005 Score=55.89 Aligned_cols=57 Identities=19% Similarity=0.277 Sum_probs=44.1
Q ss_pred CCceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHHh
Q 024696 174 CSRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNC 235 (264)
Q Consensus 174 ~~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~l 235 (264)
..+.|+|. .|..+++.+|.++|++ ||.|.++...++.| .||.|+|.+.+++..++..
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~-~g~i~~~~~~~~~g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQ-FGPINNHFFYESFG---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGG-GSCCCCEEEECSSS---EEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHh-cCCcceEEEEccCC---eEEEEEeCCHHHHHHHHhc
Confidence 34789998 6999999999999999 59999999887765 6999999999999988763
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.86 E-value=0.012 Score=43.82 Aligned_cols=74 Identities=18% Similarity=0.280 Sum_probs=54.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCceEE-EEEecc--------------CC-CceeEEEEEECCHHHHHHHHHhCCce
Q 024696 176 RTIYCTNIDKKVTQGDIKLFFESVCGEVQR-LRLLGD--------------YQ-HSTRIAFVEFAMAESAIAALNCSGAV 239 (264)
Q Consensus 176 ~~l~V~nL~~~~te~~L~~~F~~~~G~V~~-v~i~~~--------------~~-~~~g~afV~f~~~~~A~~Ai~l~g~~ 239 (264)
..|.|-+.|+.. ...+.+.|++ ||.|.. ....++ +. ...++..|+|++..+|.+|+..||..
T Consensus 8 ~~VtVFGFp~~~-~~~VI~~Fs~-~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETM-ANQVIAYFQE-FGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp CEEEEECCCGGG-HHHHHHHHGG-GSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred eEEEEEecCHHH-HHHHHHHHHh-hceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 567788887765 4566778898 598755 322110 00 12458999999999999999999999
Q ss_pred eCCeeEEEeecC
Q 024696 240 LGSLPIRVSPSK 251 (264)
Q Consensus 240 ~~g~~l~v~~a~ 251 (264)
++|.-|-|.+.+
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999988887754
No 400
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.76 E-value=0.011 Score=41.66 Aligned_cols=75 Identities=11% Similarity=0.163 Sum_probs=53.9
Q ss_pred CceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccC---C-CceeEEEEEECCHHHHHHHHH-hCCceeCCe-----e
Q 024696 175 SRTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDY---Q-HSTRIAFVEFAMAESAIAALN-CSGAVLGSL-----P 244 (264)
Q Consensus 175 ~~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~---~-~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~-----~ 244 (264)
+-+|.|+.||+.+||+++.+.++.. -.+........+ + ..-.-|+|.|.+.++...-.+ .+|+.+-+. +
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~-~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPL-PAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCC-SSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCc-CccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 3689999999999999999988874 455443333322 1 122378999999999999998 999877332 4
Q ss_pred EEEeec
Q 024696 245 IRVSPS 250 (264)
Q Consensus 245 l~v~~a 250 (264)
-.|++|
T Consensus 88 a~VE~A 93 (97)
T 2l08_A 88 AVVEFA 93 (97)
T ss_dssp EEEEEC
T ss_pred eEEEec
Confidence 445665
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=89.88 E-value=0.98 Score=41.46 Aligned_cols=54 Identities=20% Similarity=0.305 Sum_probs=45.0
Q ss_pred CcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hc
Q 024696 78 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS-LA 138 (264)
Q Consensus 78 ~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~-l~ 138 (264)
+..++++ +|..+...+|.+.|+.||.+ +|.++.+ ..|||.|.+.+.|..+++ ++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-----t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-----TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-----SEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-----CeEEEEECCHHHHHHHHHHHH
Confidence 4557776 89999999999999999964 4676655 489999999999999997 54
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=80.33 E-value=5.8 Score=36.31 Aligned_cols=53 Identities=23% Similarity=0.393 Sum_probs=42.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hC
Q 024696 176 RTIYCTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CS 236 (264)
Q Consensus 176 ~~l~V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~ 236 (264)
..++++ +|..+...+|.+.|+. ||.| +|..+.+. .|||.|.+.++|..+++ ++
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~-fg~v-~V~widdt-----~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSA-FGNI-QISWIDDT-----SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGG-GCCC-EEEECSSS-----EEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHh-cCCE-EEEEEcCC-----eEEEEECCHHHHHHHHHHHH
Confidence 566666 8899999999999998 5954 55554443 79999999999999997 64
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=60.31 E-value=31 Score=22.15 Aligned_cols=59 Identities=12% Similarity=0.246 Sum_probs=37.1
Q ss_pred CCCHHHHHHHhhhcCC----ceEEEEEeccCCCceeEEEEEECCHHHHHHHHH-hCCceeCCeeEEEeecC
Q 024696 186 KVTQGDIKLFFESVCG----EVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN-CSGAVLGSLPIRVSPSK 251 (264)
Q Consensus 186 ~~te~~L~~~F~~~~G----~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~-l~g~~~~g~~l~v~~a~ 251 (264)
.++..+|...+....| .|-.+++..+ |.||+-... .|..+++ +++..+.|+.++++.++
T Consensus 12 ~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~------~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 12 KIRAVDFVGTIAKIDGVSADDIGIITIMDN------ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ---CHHHHHHHHTSTTCCGGGEEEEEECSS------CEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred CCCHHHHHHHHHHccCCChhhccEEEEeCC------cEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 3666777777765323 4566777443 788887654 4666776 88999999999998764
No 404
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=58.96 E-value=17 Score=28.14 Aligned_cols=58 Identities=17% Similarity=0.113 Sum_probs=39.8
Q ss_pred CcEEEEcCCCC-c--------CCHHHHHHHh--hcCCCeeEEEEecCCCCCceEEEEEecCH-HHHHHHHH
Q 024696 78 RRTVYVSDIDQ-Q--------VTEEQLATLF--LTCGQVVDCRICGDPNSVLRFAFVEFTDE-EGARAALS 136 (264)
Q Consensus 78 ~~~v~V~nLp~-~--------~te~~L~~~F--~~~G~I~~v~i~~~~~~s~G~afV~F~~~-~~a~~Ai~ 136 (264)
+-++.|-|+|. . .+.++|++.| ..|.++. |........+.|+|.|+|.+. .-=..|+.
T Consensus 12 PwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 12 PWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp SCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred CCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 45677888876 2 3457899977 8999876 566666666779999999653 23334443
No 405
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=42.80 E-value=55 Score=25.20 Aligned_cols=48 Identities=21% Similarity=0.237 Sum_probs=33.4
Q ss_pred ceEEEeCCCC-C--------CCHHHHHHHh--hhcCCceEEEEEeccCCCceeEEEEEECC
Q 024696 176 RTIYCTNIDK-K--------VTQGDIKLFF--ESVCGEVQRLRLLGDYQHSTRIAFVEFAM 225 (264)
Q Consensus 176 ~~l~V~nL~~-~--------~te~~L~~~F--~~~~G~V~~v~i~~~~~~~~g~afV~f~~ 225 (264)
-++.|.|+|. . .+..+|++.| +. |..+. |+...++...+|+|.|.|.+
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~-F~p~k-v~~l~~~~Gh~g~aIv~F~~ 71 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRG-FNPTR-VRPLWNYLGHSGTAIVEFNK 71 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTT-CCCSE-EEEEECSSBEEEEEEEECCS
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcC-CCCce-eEecccCCCCceeEEEEecC
Confidence 4567777776 2 4457899977 87 57755 54444444478899999977
No 406
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=41.23 E-value=50 Score=22.97 Aligned_cols=68 Identities=7% Similarity=0.059 Sum_probs=47.5
Q ss_pred EeCCCCCCCHHHHHHHhhhcCCceEEEEEeccCCCceeEEEEEECCHHHHHHHHHhCCceeCCeeEEEeecCCC
Q 024696 180 CTNIDKKVTQGDIKLFFESVCGEVQRLRLLGDYQHSTRIAFVEFAMAESAIAALNCSGAVLGSLPIRVSPSKTP 253 (264)
Q Consensus 180 V~nL~~~~te~~L~~~F~~~~G~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~l~g~~~~g~~l~v~~a~~~ 253 (264)
|-.++..++-+||..-...+||.-.++..... -..|-..+.++-.+|+++-+..-.-+.|+|-.+.|+
T Consensus 21 Ii~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~------EllIpl~sQeDLDkaIellDrss~~kSLrIlL~~~~ 88 (103)
T 2cu1_A 21 ILQFPRPVKLEDLRSKAKIAFGQSMDLHYTNN------ELVIPLTTQDDLDKAVELLDRSIHMKSLKILLVING 88 (103)
T ss_dssp EEEEESSCCHHHHHHHHHHHHSSCEEEEECSS------SSCEECCSHHHHHHHHHHHHHCSSCCSEEEEEEECC
T ss_pred EEeccCCccHHHHHHHHHHHhCCeeeEEEecc------eEEEeccCHHHHHHHHHHHccCCcccceEEEEecCC
Confidence 44567889999999888888898777777633 478999999999999983222233344455444444
No 407
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=40.01 E-value=84 Score=21.15 Aligned_cols=55 Identities=22% Similarity=0.265 Sum_probs=41.1
Q ss_pred EEeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCCceeEEEEEECCHHHHHHHHH
Q 024696 179 YCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN 234 (264)
Q Consensus 179 ~V~nL~~~~te~~L~~~F~~~~G-~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~ 234 (264)
|+-..+...+..++++.+++.|| +|..|.....+. ...-|+|++..-.+|....+
T Consensus 26 ~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~-~~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 26 LTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR-GEKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT-SCEEEEEEECTTSCHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC-CceEEEEEcCCCCcHHHHHH
Confidence 34456788899999999999888 789998766442 23479999988777766544
No 408
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=39.02 E-value=65 Score=22.70 Aligned_cols=46 Identities=11% Similarity=0.101 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHhhhcCC---ceEEEEEec-cC--CCceeEEEEEECCHHHHHH
Q 024696 185 KKVTQGDIKLFFESVCG---EVQRLRLLG-DY--QHSTRIAFVEFAMAESAIA 231 (264)
Q Consensus 185 ~~~te~~L~~~F~~~~G---~V~~v~i~~-~~--~~~~g~afV~f~~~~~A~~ 231 (264)
...+..+|++-..+.|+ ++.-|.-++ .. ++++|||.| |+|.+.|.+
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 35678888887776665 334443333 33 457778866 666666654
No 409
>2cqk_A C-MPL binding protein; LA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.46
Probab=38.87 E-value=10 Score=26.57 Aligned_cols=33 Identities=9% Similarity=0.057 Sum_probs=23.5
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHhhHHHHHhhh
Q 024696 12 LEGYVCPLLLILSCFKLLVWLLVWYFLSLIKVLCLF 47 (264)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 47 (264)
-+||| ||-+|++|.+...+...+- .+..+|..-
T Consensus 43 ~~G~V-pl~~iasF~r~k~lt~d~~--~i~~al~~S 75 (101)
T 2cqk_A 43 SDQFI-PIWTVANMEEIKKLTTDPD--LILEVLRSS 75 (101)
T ss_dssp TTSCE-EHHHHHHCHHHHHHCCCHH--HHHHHHHHS
T ss_pred cCCCE-EhHHHhCChHHHHHcCCHH--HHHHHHHhC
Confidence 48999 9999999999987553322 245555554
No 410
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=38.02 E-value=53 Score=22.93 Aligned_cols=46 Identities=13% Similarity=0.154 Sum_probs=27.4
Q ss_pred CCCCHHHHHHHhhhcCC---ceEEEEEec-cC--CCceeEEEEEECCHHHHHH
Q 024696 185 KKVTQGDIKLFFESVCG---EVQRLRLLG-DY--QHSTRIAFVEFAMAESAIA 231 (264)
Q Consensus 185 ~~~te~~L~~~F~~~~G---~V~~v~i~~-~~--~~~~g~afV~f~~~~~A~~ 231 (264)
...+..+|++-+.+.|+ ++..|.-++ .. |+++|||.| |+|.+.|.+
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 45778888887776665 334443333 33 457777766 566666543
No 411
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=35.23 E-value=93 Score=22.89 Aligned_cols=45 Identities=11% Similarity=0.202 Sum_probs=28.8
Q ss_pred CCCHHHHHHHhhhcCC---ceEEEEEec-cC--CCceeEEEEEECCHHHHHH
Q 024696 186 KVTQGDIKLFFESVCG---EVQRLRLLG-DY--QHSTRIAFVEFAMAESAIA 231 (264)
Q Consensus 186 ~~te~~L~~~F~~~~G---~V~~v~i~~-~~--~~~~g~afV~f~~~~~A~~ 231 (264)
..+..||++-+...|+ ++..|.-++ .. +++.|||.| |+|.+.|.+
T Consensus 34 Tpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 34 NVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 5788999998887777 334443333 33 457777776 566666553
No 412
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=31.83 E-value=92 Score=20.88 Aligned_cols=56 Identities=13% Similarity=0.199 Sum_probs=40.8
Q ss_pred EEEeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCCceeEEEEEECCHHHHHHHHH
Q 024696 178 IYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN 234 (264)
Q Consensus 178 l~V~nL~~~~te~~L~~~F~~~~G-~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~ 234 (264)
-|+-..+...+..++++.+++.|| +|..|....-+. ...-|+|++..-++|....+
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~-~~KKA~VtL~~g~~aid~~~ 80 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMD-GEKKAVVRLSEDDDAQEVAS 80 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-SSEEEEEEECTTSCHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCC-CceEEEEEECCCCcHHHHHH
Confidence 344456788999999999998888 789997666442 23479999987776655443
No 413
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=31.32 E-value=1e+02 Score=23.10 Aligned_cols=46 Identities=13% Similarity=0.120 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHhhhcCC---ceEEEEEecc-C--CCceeEEEEEECCHHHHHH
Q 024696 185 KKVTQGDIKLFFESVCG---EVQRLRLLGD-Y--QHSTRIAFVEFAMAESAIA 231 (264)
Q Consensus 185 ~~~te~~L~~~F~~~~G---~V~~v~i~~~-~--~~~~g~afV~f~~~~~A~~ 231 (264)
...+..||++-+...|+ ++..|.-++. . +++.|||.| |+|.+.|.+
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 35778888887776666 3344443333 3 357777777 566666554
No 414
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=29.89 E-value=1.1e+02 Score=22.62 Aligned_cols=56 Identities=20% Similarity=0.231 Sum_probs=40.9
Q ss_pred EEEeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCCceeEEEEEECCHHHHHHHHH
Q 024696 178 IYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN 234 (264)
Q Consensus 178 l~V~nL~~~~te~~L~~~F~~~~G-~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~ 234 (264)
-|+--.+...+..+|++.++..|| .|..|....-++ ..--|+|++..-.+|....+
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-g~KKAyV~L~~~~daldvAn 137 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPN-GTKKAYVRLTADYDALDIAN 137 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTT-SCEEEEEEECTTCCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-CceEEEEEeCCCCcHHHHHH
Confidence 344456778899999999998888 799998766543 23369999987766665443
No 415
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=27.07 E-value=1.2e+02 Score=22.95 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=41.5
Q ss_pred EEEeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCCceeEEEEEECCHHHHHHHHH
Q 024696 178 IYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN 234 (264)
Q Consensus 178 l~V~nL~~~~te~~L~~~F~~~~G-~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~ 234 (264)
-|+-..+...+..+|++.++..|| .|..|....-++ ...-|+|++..-++|....+
T Consensus 95 ~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-~~KKAiVtL~~g~~aid~~~ 151 (156)
T 2zkr_s 95 TLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPD-GEKKAYVRLAPDYDALDVAN 151 (156)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSS-SCEEEEEEECTTSCHHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCC-CceEEEEEECCCCcHHHHHH
Confidence 344456788999999999998888 799998776554 23479999987766555443
No 416
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=27.03 E-value=1.3e+02 Score=22.59 Aligned_cols=56 Identities=18% Similarity=0.317 Sum_probs=40.5
Q ss_pred EEEeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCCceeEEEEEECCHHHHHHHHH
Q 024696 178 IYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN 234 (264)
Q Consensus 178 l~V~nL~~~~te~~L~~~F~~~~G-~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~ 234 (264)
-|+--.+...+..+|++.++..|| .|..|.....++ ...-|+|++..-.+|....+
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~-g~KKAyV~La~~~dAldvAn 145 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTIT-GNKKAYIRLAADSDSLTLAN 145 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTT-SCEEEEEEECSSSCHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCC-CcEEEEEEcCCCCcHHHHHH
Confidence 334446778899999999998888 789998766543 23369999987766665443
No 417
>1s29_A LA protein; winged helix-turn-helix, autoantigen, RNA-binding, RNA binding protein; 1.60A {Trypanosoma brucei} SCOP: a.4.5.46
Probab=24.26 E-value=16 Score=25.13 Aligned_cols=32 Identities=16% Similarity=0.152 Sum_probs=22.0
Q ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q 024696 12 LEGYVCPLLLILSCFKLLVWLLVWYFLSLIKVLCL 46 (264)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 46 (264)
-|||| ||-+|++|.+.......+- -+..+|..
T Consensus 41 ~~G~V-pl~~i~sF~r~k~lt~d~~--~i~~al~~ 72 (92)
T 1s29_A 41 AEGFV-SLETLLTFKRVNSVTTDVK--EVVEAIRP 72 (92)
T ss_dssp TTCCE-EHHHHTTSHHHHTTCSCHH--HHHHHHTT
T ss_pred CCCCE-EhHHHhCChhHHHHcCCHH--HHHHHHhh
Confidence 48999 9999999999877543222 24555543
No 418
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=23.81 E-value=1.4e+02 Score=22.35 Aligned_cols=56 Identities=16% Similarity=0.198 Sum_probs=40.6
Q ss_pred EEEeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccCCCceeEEEEEECCHHHHHHHHH
Q 024696 178 IYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDYQHSTRIAFVEFAMAESAIAALN 234 (264)
Q Consensus 178 l~V~nL~~~~te~~L~~~F~~~~G-~V~~v~i~~~~~~~~g~afV~f~~~~~A~~Ai~ 234 (264)
-|+--.+...+..+|++.++..|| .|..|.....++ ..--|+|++..-.+|....+
T Consensus 91 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~-g~KKAyV~L~~~~daldvAn 147 (152)
T 3iz5_X 91 TLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPD-GKKKAYVKLTPDYDALDVAN 147 (152)
T ss_dssp EEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTT-SSEEEEEEECTTSCHHHHHG
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCC-CceEEEEEcCCCCcHHHHHH
Confidence 344456778899999999988888 789997766432 23479999988777665543
No 419
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=21.87 E-value=68 Score=21.92 Aligned_cols=35 Identities=20% Similarity=0.202 Sum_probs=27.5
Q ss_pred EEEeCCCCCCCHHHHHHHhhhcCC-ceEEEEEeccC
Q 024696 178 IYCTNIDKKVTQGDIKLFFESVCG-EVQRLRLLGDY 212 (264)
Q Consensus 178 l~V~nL~~~~te~~L~~~F~~~~G-~V~~v~i~~~~ 212 (264)
-|+-..+...+..+|++.++..|| +|..|....-+
T Consensus 29 ~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~ 64 (93)
T 3r8s_T 29 TIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVK 64 (93)
T ss_dssp EEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEEC
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeC
Confidence 444556788999999999999888 78888766544
No 420
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=21.75 E-value=76 Score=26.09 Aligned_cols=30 Identities=13% Similarity=0.320 Sum_probs=24.7
Q ss_pred CcEEEEcCCCCcCCHHHHHHHhhcCCCeeEE
Q 024696 78 RRTVYVSDIDQQVTEEQLATLFLTCGQVVDC 108 (264)
Q Consensus 78 ~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v 108 (264)
...+.|+|+|+.++..-|.+++.. +.+...
T Consensus 110 ~~~~iv~NlPy~iss~il~~ll~~-~~~~~~ 139 (271)
T 3fut_A 110 QGSLLVANLPYHIATPLVTRLLKT-GRFARL 139 (271)
T ss_dssp TTEEEEEEECSSCCHHHHHHHHHH-CCEEEE
T ss_pred CccEEEecCcccccHHHHHHHhcC-CCCCEE
Confidence 456899999999999999999987 555443
No 421
>1vf5_H Protein PET N; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.27.1 PDB: 2d2c_H* 2e74_H* 2e75_H* 2e76_H* 2zt9_H*
Probab=21.35 E-value=62 Score=16.97 Aligned_cols=25 Identities=32% Similarity=0.587 Sum_probs=14.6
Q ss_pred ccccccCcchhhHHHHHHHHHHHHHH
Q 024696 7 MDILPLEGYVCPLLLILSCFKLLVWL 32 (264)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (264)
|||+-+ |.++-..+.+...-+++|-
T Consensus 1 mdivsl-~WaalmvvftfSlslVVWG 25 (29)
T 1vf5_H 1 MEIDVL-GWVALLVVFTWSIAMVVWG 25 (29)
T ss_dssp --CTTH-HHHHHHHHHHHHHHHHHHH
T ss_pred CcchhH-HHHHHHHHhheeeeEEEEe
Confidence 566655 5665666666666677764
No 422
>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
Probab=20.72 E-value=2.1e+02 Score=19.67 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=25.4
Q ss_pred HHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecC
Q 024696 93 EQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTD 127 (264)
Q Consensus 93 ~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~ 127 (264)
.+|.+.+...| |.+-.|..+..++.-|++++..+
T Consensus 27 PEv~~~L~~aG-i~~ysIfl~~~~~~LF~~~E~~d 60 (104)
T 1x8d_A 27 PELEAVLKSHG-AHNYAIYLDKARNLLFAMVEIES 60 (104)
T ss_dssp HHHHHHHHHTT-EEEEEEEEETTTTEEEEEEEESC
T ss_pred HHHHHHHHHcC-CeEEEEEEECCCCeEEEEEEEcC
Confidence 46777888887 56667776665555799999988
No 423
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=20.30 E-value=2.1e+02 Score=19.38 Aligned_cols=67 Identities=15% Similarity=0.185 Sum_probs=50.2
Q ss_pred CCCcEEEEcCCCCcCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH--hcCCCCCCcceEEee
Q 024696 76 VIRRTVYVSDIDQQVTEEQLATLFLTCGQVVDCRICGDPNSVLRFAFVEFTDEEGARAALS--LAGTMLGFYPVRVLP 151 (264)
Q Consensus 76 ~~~~~v~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~s~G~afV~F~~~~~a~~Ai~--l~~~~~~g~~l~V~~ 151 (264)
...+-+.|-|+|..+-..++.-.....|---.|..+ | |.|.|.|.+.++...|++ +|.. ..++.+..
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi-d-----gqamirfqnsdeqrlaiqkllnhn---nnklqiei 78 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-D-----GQAMIRFQNSDEQRLAIQKLLNHN---NNKLQIEI 78 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-S-----SCEEEEESSHHHHHHHHHHHEETT---TTEEEEEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-c-----CeeEEEecCChHHHHHHHHHHhcC---CCEEEEEE
Confidence 356779999999999999988888888864444433 2 799999999999999997 4432 24455544
Done!