Query 024697
Match_columns 264
No_of_seqs 344 out of 1913
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 06:40:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024697.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024697hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0149 Predicted RNA-binding 99.9 3.7E-24 8.1E-29 182.5 15.9 91 23-113 4-95 (247)
2 PLN03134 glycine-rich RNA-bind 99.8 4.7E-20 1E-24 150.4 15.5 84 28-111 31-115 (144)
3 TIGR01659 sex-lethal sex-letha 99.8 6.7E-18 1.5E-22 155.9 12.8 85 26-110 102-187 (346)
4 TIGR01628 PABP-1234 polyadenyl 99.7 3.5E-17 7.5E-22 160.2 16.3 87 28-115 282-369 (562)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.8E-17 3.9E-22 152.6 13.5 85 28-112 266-351 (352)
6 TIGR01659 sex-lethal sex-letha 99.7 5.1E-17 1.1E-21 150.1 15.0 84 29-112 191-277 (346)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 3.9E-17 8.5E-22 150.4 10.6 82 30-111 2-84 (352)
8 KOG0125 Ataxin 2-binding prote 99.7 1.2E-16 2.5E-21 142.3 9.1 82 27-110 92-174 (376)
9 KOG0148 Apoptosis-promoting RN 99.7 1.1E-15 2.4E-20 133.0 12.9 79 29-113 162-241 (321)
10 KOG0122 Translation initiation 99.7 5.3E-16 1.1E-20 133.3 10.6 83 28-110 186-269 (270)
11 PF00076 RRM_1: RNA recognitio 99.6 4.6E-16 1E-20 109.7 7.6 69 34-103 1-70 (70)
12 KOG0144 RNA-binding protein CU 99.6 7.9E-16 1.7E-20 141.2 9.1 108 6-113 9-120 (510)
13 KOG0148 Apoptosis-promoting RN 99.6 5.6E-16 1.2E-20 134.9 7.5 82 31-112 62-144 (321)
14 PLN03120 nucleic acid binding 99.6 3.3E-15 7.1E-20 131.3 10.6 76 31-109 4-79 (260)
15 KOG0117 Heterogeneous nuclear 99.6 1.7E-14 3.7E-19 132.9 15.7 81 26-114 254-335 (506)
16 TIGR01645 half-pint poly-U bin 99.6 2.3E-15 5.1E-20 146.9 10.5 82 29-110 202-284 (612)
17 TIGR01648 hnRNP-R-Q heterogene 99.6 1.9E-14 4.2E-19 140.1 16.7 76 29-112 231-309 (578)
18 PF14259 RRM_6: RNA recognitio 99.6 3E-15 6.5E-20 106.4 7.1 69 34-103 1-70 (70)
19 TIGR01645 half-pint poly-U bin 99.6 4E-15 8.6E-20 145.3 10.0 80 29-108 105-185 (612)
20 KOG4207 Predicted splicing fac 99.6 4.1E-15 8.8E-20 125.1 8.0 87 25-111 7-94 (256)
21 TIGR01628 PABP-1234 polyadenyl 99.6 8.6E-15 1.9E-19 143.3 10.6 77 33-109 2-79 (562)
22 KOG0107 Alternative splicing f 99.6 6.2E-15 1.3E-19 121.1 7.7 75 30-109 9-84 (195)
23 TIGR01622 SF-CC1 splicing fact 99.6 2.1E-14 4.6E-19 136.9 11.7 83 28-110 86-168 (457)
24 KOG0113 U1 small nuclear ribon 99.5 1.5E-14 3.2E-19 127.5 8.8 80 29-108 99-179 (335)
25 KOG0144 RNA-binding protein CU 99.5 3.7E-15 7.9E-20 136.8 4.8 86 30-116 123-212 (510)
26 TIGR01648 hnRNP-R-Q heterogene 99.5 1.8E-14 3.8E-19 140.4 9.8 78 29-107 56-135 (578)
27 TIGR01642 U2AF_lg U2 snRNP aux 99.5 4.8E-14 1E-18 136.1 11.9 82 29-110 293-375 (509)
28 KOG0145 RNA-binding protein EL 99.5 5.4E-14 1.2E-18 122.1 10.8 85 27-111 37-122 (360)
29 KOG0121 Nuclear cap-binding pr 99.5 2.1E-14 4.6E-19 112.5 7.2 81 28-108 33-114 (153)
30 TIGR01622 SF-CC1 splicing fact 99.5 5.9E-14 1.3E-18 133.9 11.2 78 31-108 186-264 (457)
31 PLN03121 nucleic acid binding 99.5 6.5E-14 1.4E-18 121.5 10.3 76 30-108 4-79 (243)
32 KOG0111 Cyclophilin-type pepti 99.5 1E-14 2.2E-19 123.8 5.2 85 29-113 8-93 (298)
33 KOG0126 Predicted RNA-binding 99.5 5.2E-15 1.1E-19 122.3 2.2 81 29-109 33-114 (219)
34 KOG0117 Heterogeneous nuclear 99.5 5.1E-14 1.1E-18 129.8 8.6 79 29-107 81-161 (506)
35 COG0724 RNA-binding proteins ( 99.5 1.2E-13 2.6E-18 119.5 9.6 79 31-109 115-194 (306)
36 smart00362 RRM_2 RNA recogniti 99.5 1.7E-13 3.6E-18 95.5 8.5 71 33-105 1-72 (72)
37 smart00360 RRM RNA recognition 99.5 1.6E-13 3.4E-18 95.2 8.3 70 36-105 1-71 (71)
38 PLN03213 repressor of silencin 99.5 1E-13 2.2E-18 129.2 9.5 79 28-110 7-88 (759)
39 KOG0108 mRNA cleavage and poly 99.5 1.1E-13 2.4E-18 130.4 7.8 81 32-112 19-100 (435)
40 KOG4205 RNA-binding protein mu 99.5 1E-13 2.2E-18 125.6 7.0 84 30-113 5-88 (311)
41 KOG0146 RNA-binding protein ET 99.5 7.9E-14 1.7E-18 121.5 5.6 87 26-112 280-367 (371)
42 KOG0130 RNA-binding protein RB 99.4 4E-13 8.7E-18 106.3 8.2 89 25-113 66-155 (170)
43 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 9.2E-13 2E-17 127.0 11.3 78 28-110 272-351 (481)
44 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 7.8E-13 1.7E-17 127.5 10.5 75 31-111 2-79 (481)
45 cd00590 RRM RRM (RNA recogniti 99.4 1.4E-12 2.9E-17 91.3 9.0 73 33-106 1-74 (74)
46 KOG0109 RNA-binding protein LA 99.4 4.4E-13 9.6E-18 118.0 6.3 71 32-110 3-74 (346)
47 KOG0114 Predicted RNA-binding 99.4 2.3E-12 5E-17 97.6 9.1 87 21-110 8-95 (124)
48 KOG0105 Alternative splicing f 99.4 2.9E-12 6.2E-17 106.4 9.9 79 30-111 5-84 (241)
49 KOG0131 Splicing factor 3b, su 99.4 5.6E-13 1.2E-17 110.3 5.2 80 29-108 7-87 (203)
50 KOG4205 RNA-binding protein mu 99.4 1.7E-11 3.7E-16 111.2 15.0 86 30-115 96-181 (311)
51 KOG0127 Nucleolar protein fibr 99.3 3.2E-12 6.9E-17 120.6 9.6 87 25-111 286-379 (678)
52 KOG0123 Polyadenylate-binding 99.3 4E-12 8.8E-17 118.4 8.7 80 33-115 78-158 (369)
53 KOG0145 RNA-binding protein EL 99.3 9.8E-12 2.1E-16 108.1 9.8 87 24-110 271-358 (360)
54 smart00361 RRM_1 RNA recogniti 99.3 6.7E-12 1.4E-16 89.8 7.0 62 44-105 1-70 (70)
55 KOG0146 RNA-binding protein ET 99.3 1.9E-12 4.2E-17 112.9 4.7 85 30-115 18-106 (371)
56 KOG0131 Splicing factor 3b, su 99.3 4.9E-12 1.1E-16 104.7 5.8 84 31-114 96-181 (203)
57 KOG0116 RasGAP SH3 binding pro 99.3 3.3E-11 7.2E-16 113.1 11.1 83 28-110 285-367 (419)
58 KOG0415 Predicted peptidyl pro 99.3 7.8E-12 1.7E-16 112.7 6.5 82 28-109 236-318 (479)
59 KOG4212 RNA-binding protein hn 99.3 1.5E-11 3.2E-16 113.5 8.3 80 29-109 42-123 (608)
60 KOG0153 Predicted RNA-binding 99.3 1.6E-11 3.6E-16 110.4 8.2 81 23-109 220-302 (377)
61 KOG0147 Transcriptional coacti 99.3 6E-12 1.3E-16 118.9 5.6 79 32-110 279-358 (549)
62 KOG0127 Nucleolar protein fibr 99.2 1.9E-11 4.1E-16 115.4 8.1 81 31-112 117-198 (678)
63 KOG0124 Polypyrimidine tract-b 99.2 6.1E-12 1.3E-16 113.8 4.0 77 31-107 113-190 (544)
64 KOG0132 RNA polymerase II C-te 99.2 2.4E-09 5.3E-14 104.8 21.6 78 31-114 421-499 (894)
65 PF13893 RRM_5: RNA recognitio 99.2 4E-11 8.6E-16 81.7 6.3 55 48-107 1-56 (56)
66 KOG0109 RNA-binding protein LA 99.2 4.1E-11 8.9E-16 105.7 5.7 76 28-111 75-151 (346)
67 TIGR01642 U2AF_lg U2 snRNP aux 99.1 1.1E-10 2.5E-15 112.7 9.1 78 25-108 169-258 (509)
68 KOG4661 Hsp27-ERE-TATA-binding 99.1 2.2E-10 4.7E-15 108.8 9.6 82 29-110 403-485 (940)
69 KOG4208 Nucleolar RNA-binding 99.1 2.6E-10 5.7E-15 96.2 8.0 86 25-110 43-130 (214)
70 KOG0124 Polypyrimidine tract-b 99.1 3.1E-10 6.7E-15 102.9 7.1 81 28-108 207-288 (544)
71 KOG0123 Polyadenylate-binding 99.0 2.1E-10 4.6E-15 106.9 5.6 90 25-115 264-354 (369)
72 KOG4206 Spliceosomal protein s 99.0 1.3E-09 2.9E-14 93.2 8.3 81 28-111 6-91 (221)
73 KOG4212 RNA-binding protein hn 99.0 1E-09 2.2E-14 101.6 7.8 78 25-107 530-608 (608)
74 KOG0226 RNA-binding proteins [ 99.0 6.1E-10 1.3E-14 96.7 5.2 88 21-108 180-268 (290)
75 KOG0533 RRM motif-containing p 98.9 4.5E-09 9.8E-14 92.2 8.2 83 27-110 79-162 (243)
76 KOG4209 Splicing factor RNPS1, 98.9 5.1E-09 1.1E-13 91.7 8.2 85 26-110 96-180 (231)
77 KOG0110 RNA-binding protein (R 98.9 1.6E-09 3.5E-14 105.2 4.4 84 28-111 610-694 (725)
78 KOG0110 RNA-binding protein (R 98.8 7.1E-09 1.5E-13 100.8 7.7 80 29-108 513-596 (725)
79 KOG1457 RNA binding protein (c 98.8 4.5E-08 9.8E-13 83.8 11.6 88 26-113 29-121 (284)
80 KOG4849 mRNA cleavage factor I 98.8 1.6E-07 3.5E-12 85.0 14.9 73 32-104 81-156 (498)
81 KOG4211 Splicing factor hnRNP- 98.7 7.9E-08 1.7E-12 90.3 9.3 82 28-112 7-88 (510)
82 KOG4660 Protein Mei2, essentia 98.6 3.3E-08 7.1E-13 94.1 3.5 72 27-103 71-143 (549)
83 KOG0106 Alternative splicing f 98.6 6.1E-08 1.3E-12 83.5 4.4 70 32-109 2-72 (216)
84 KOG1548 Transcription elongati 98.5 2.7E-07 5.8E-12 83.5 8.0 81 28-109 131-220 (382)
85 KOG4454 RNA binding protein (R 98.5 4E-08 8.6E-13 83.9 1.9 77 30-108 8-85 (267)
86 KOG0147 Transcriptional coacti 98.5 3.8E-08 8.3E-13 93.4 1.6 88 26-113 174-261 (549)
87 KOG0151 Predicted splicing reg 98.5 4.8E-07 1E-11 88.3 7.8 83 26-108 169-255 (877)
88 KOG0120 Splicing factor U2AF, 98.4 4E-07 8.8E-12 87.1 5.5 88 25-112 283-371 (500)
89 KOG1995 Conserved Zn-finger pr 98.3 1.3E-06 2.9E-11 79.4 7.4 86 26-111 61-155 (351)
90 PF04059 RRM_2: RNA recognitio 98.3 5.2E-06 1.1E-10 63.1 8.5 77 32-108 2-85 (97)
91 KOG4211 Splicing factor hnRNP- 98.2 4.6E-06 1E-10 78.6 7.4 80 29-109 101-181 (510)
92 KOG4210 Nuclear localization s 98.1 4.2E-06 9.2E-11 75.6 5.2 79 31-109 184-263 (285)
93 PF11608 Limkain-b1: Limkain b 98.0 2.2E-05 4.7E-10 57.7 6.5 68 32-109 3-76 (90)
94 KOG0106 Alternative splicing f 98.0 7.7E-06 1.7E-10 70.6 4.4 78 25-110 93-171 (216)
95 PF08777 RRM_3: RNA binding mo 98.0 1.2E-05 2.7E-10 62.0 4.8 70 32-107 2-77 (105)
96 KOG1457 RNA binding protein (c 97.8 1.1E-05 2.5E-10 69.3 3.2 63 28-94 207-269 (284)
97 KOG1190 Polypyrimidine tract-b 97.8 0.00017 3.7E-09 66.9 10.9 76 31-111 297-374 (492)
98 PF14605 Nup35_RRM_2: Nup53/35 97.8 7.1E-05 1.5E-09 50.5 5.5 52 32-90 2-53 (53)
99 KOG1190 Polypyrimidine tract-b 97.7 4.3E-05 9.3E-10 70.8 5.2 74 29-108 26-102 (492)
100 KOG0129 Predicted RNA-binding 97.7 0.00012 2.5E-09 69.8 8.0 65 27-92 255-325 (520)
101 KOG4307 RNA binding protein RB 97.6 0.00022 4.8E-09 70.0 8.6 80 27-106 863-943 (944)
102 KOG1855 Predicted RNA-binding 97.6 9.1E-05 2E-09 69.0 5.4 71 26-96 226-309 (484)
103 COG5175 MOT2 Transcriptional r 97.6 0.00014 3.1E-09 65.9 6.1 81 30-110 113-203 (480)
104 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00033 7.2E-09 53.5 7.1 78 29-107 4-89 (100)
105 KOG0129 Predicted RNA-binding 97.6 0.00024 5.3E-09 67.6 7.6 64 29-92 368-432 (520)
106 KOG4206 Spliceosomal protein s 97.4 0.00069 1.5E-08 58.4 7.3 75 28-107 143-219 (221)
107 KOG1456 Heterogeneous nuclear 97.3 0.0031 6.7E-08 58.2 11.1 81 24-109 280-362 (494)
108 KOG0128 RNA-binding protein SA 97.1 0.00037 8.1E-09 69.8 3.0 78 31-109 736-814 (881)
109 KOG1365 RNA-binding protein Fu 96.9 0.0011 2.4E-08 61.3 4.5 74 31-105 161-238 (508)
110 KOG1456 Heterogeneous nuclear 96.9 0.0038 8.2E-08 57.6 7.9 86 22-113 22-110 (494)
111 KOG2314 Translation initiation 96.9 0.0036 7.9E-08 60.4 8.0 76 30-106 57-140 (698)
112 KOG0105 Alternative splicing f 96.9 0.016 3.5E-07 48.9 10.8 76 25-107 109-187 (241)
113 PF08952 DUF1866: Domain of un 96.9 0.0025 5.5E-08 51.8 5.8 56 47-110 52-107 (146)
114 KOG3152 TBP-binding protein, a 96.7 0.0013 2.8E-08 57.8 3.1 72 30-101 73-157 (278)
115 PF10309 DUF2414: Protein of u 96.7 0.009 2E-07 41.6 6.8 57 29-93 3-62 (62)
116 KOG0128 RNA-binding protein SA 96.7 0.00019 4.1E-09 71.9 -2.2 71 29-99 665-735 (881)
117 KOG0112 Large RNA-binding prot 96.6 0.00048 1E-08 69.4 -0.5 83 24-107 365-448 (975)
118 KOG1365 RNA-binding protein Fu 96.4 0.0033 7.2E-08 58.2 4.0 78 32-110 281-362 (508)
119 KOG0120 Splicing factor U2AF, 96.4 0.0092 2E-07 57.6 7.0 61 48-108 426-490 (500)
120 KOG2193 IGF-II mRNA-binding pr 96.4 0.002 4.2E-08 60.3 2.3 76 32-113 2-79 (584)
121 KOG2416 Acinus (induces apopto 96.2 0.0037 7.9E-08 60.7 3.3 82 24-111 437-523 (718)
122 KOG1548 Transcription elongati 96.1 0.016 3.5E-07 53.0 6.6 79 26-108 260-350 (382)
123 KOG4307 RNA binding protein RB 96.1 0.0094 2E-07 59.0 5.3 83 24-107 427-511 (944)
124 KOG0115 RNA-binding protein p5 96.0 0.0056 1.2E-07 53.9 3.1 74 32-106 32-110 (275)
125 PF15023 DUF4523: Protein of u 95.8 0.037 8E-07 44.8 6.5 74 28-108 83-160 (166)
126 KOG2202 U2 snRNP splicing fact 95.7 0.0051 1.1E-07 54.1 1.4 54 54-108 92-146 (260)
127 KOG0112 Large RNA-binding prot 95.6 0.015 3.3E-07 58.9 4.7 78 27-110 451-531 (975)
128 KOG4676 Splicing factor, argin 95.5 0.021 4.4E-07 53.2 4.9 77 31-107 7-86 (479)
129 KOG1996 mRNA splicing factor [ 95.4 0.044 9.5E-07 49.3 6.3 63 45-107 300-364 (378)
130 KOG4285 Mitotic phosphoprotein 95.3 0.07 1.5E-06 48.2 7.5 71 31-108 197-268 (350)
131 KOG4210 Nuclear localization s 95.0 0.019 4.1E-07 52.0 3.1 83 29-111 86-169 (285)
132 KOG2591 c-Mpl binding protein, 94.8 0.037 8E-07 53.6 4.5 73 28-107 172-249 (684)
133 PF08675 RNA_bind: RNA binding 94.8 0.1 2.3E-06 38.4 5.8 54 31-93 9-62 (87)
134 KOG2068 MOT2 transcription fac 94.6 0.015 3.2E-07 53.1 1.3 82 29-110 75-163 (327)
135 KOG2135 Proteins containing th 94.4 0.024 5.1E-07 53.9 2.1 74 30-109 371-445 (526)
136 KOG2253 U1 snRNP complex, subu 94.3 0.043 9.3E-07 54.1 3.9 71 28-107 37-108 (668)
137 PF03880 DbpA: DbpA RNA bindin 93.5 0.27 5.9E-06 35.1 5.8 66 33-107 2-74 (74)
138 PF04847 Calcipressin: Calcipr 92.7 0.37 8.1E-06 40.9 6.4 60 44-109 8-70 (184)
139 PF07576 BRAP2: BRCA1-associat 92.5 1.3 2.9E-05 34.3 8.8 64 31-96 13-78 (110)
140 KOG4660 Protein Mei2, essentia 91.0 0.37 7.9E-06 46.8 5.0 54 55-108 413-471 (549)
141 PF11767 SET_assoc: Histone ly 90.8 0.79 1.7E-05 32.3 5.4 53 42-103 11-64 (66)
142 KOG4574 RNA-binding protein (c 89.1 0.25 5.4E-06 50.3 2.2 72 32-109 299-373 (1007)
143 PF03467 Smg4_UPF3: Smg-4/UPF3 88.6 0.39 8.4E-06 40.4 2.8 81 29-109 5-97 (176)
144 KOG4483 Uncharacterized conser 79.3 4.4 9.6E-05 38.2 5.6 67 29-102 389-456 (528)
145 PF07530 PRE_C2HC: Associated 75.5 6.1 0.00013 27.9 4.3 60 46-108 2-63 (68)
146 KOG2318 Uncharacterized conser 73.5 15 0.00032 36.4 7.6 73 28-100 171-296 (650)
147 smart00596 PRE_C2HC PRE_C2HC d 72.0 7 0.00015 27.7 3.8 60 46-108 2-63 (69)
148 KOG4454 RNA binding protein (R 71.1 0.91 2E-05 39.5 -1.0 65 26-91 75-143 (267)
149 KOG4410 5-formyltetrahydrofola 70.3 26 0.00056 31.8 7.9 48 31-83 330-377 (396)
150 PF10567 Nab6_mRNP_bdg: RNA-re 66.4 9.8 0.00021 34.5 4.5 81 28-108 12-106 (309)
151 KOG0804 Cytoplasmic Zn-finger 64.4 26 0.00056 33.8 7.0 66 31-98 74-141 (493)
152 KOG4676 Splicing factor, argin 63.6 0.93 2E-05 42.5 -2.5 66 29-98 149-214 (479)
153 PF03468 XS: XS domain; Inter 63.6 13 0.00027 29.1 4.2 46 43-91 29-75 (116)
154 COG0724 RNA-binding proteins ( 61.1 12 0.00026 31.5 4.0 65 26-90 220-284 (306)
155 PF15513 DUF4651: Domain of un 55.1 26 0.00057 24.3 4.1 18 46-63 9-26 (62)
156 KOG4019 Calcineurin-mediated s 52.6 13 0.00029 31.4 2.7 75 30-110 9-90 (193)
157 PRK14548 50S ribosomal protein 50.5 60 0.0013 23.9 5.6 58 33-93 22-81 (84)
158 PRK11634 ATP-dependent RNA hel 50.3 1.2E+02 0.0025 30.7 9.5 69 32-109 487-562 (629)
159 KOG2193 IGF-II mRNA-binding pr 50.2 1.4 3E-05 41.8 -3.8 76 29-108 78-155 (584)
160 KOG2891 Surface glycoprotein [ 49.6 15 0.00033 33.2 2.8 36 29-64 147-194 (445)
161 PF00403 HMA: Heavy-metal-asso 48.5 74 0.0016 21.0 5.6 55 33-93 1-59 (62)
162 PF02714 DUF221: Domain of unk 48.0 19 0.00041 32.7 3.2 32 76-108 1-32 (325)
163 KOG0226 RNA-binding proteins [ 47.7 13 0.00029 33.1 2.0 79 28-107 93-175 (290)
164 COG5193 LHP1 La protein, small 47.4 9.3 0.0002 36.1 1.1 62 30-91 173-244 (438)
165 TIGR03636 L23_arch archaeal ri 46.2 84 0.0018 22.7 5.7 58 33-93 15-74 (77)
166 KOG3424 40S ribosomal protein 46.0 34 0.00074 26.9 3.8 46 42-88 34-84 (132)
167 PF11411 DNA_ligase_IV: DNA li 45.4 16 0.00034 22.6 1.5 16 41-56 19-34 (36)
168 PF07292 NID: Nmi/IFP 35 domai 45.3 26 0.00056 26.1 3.0 32 76-107 1-34 (88)
169 PF08206 OB_RNB: Ribonuclease 45.0 3.1 6.7E-05 28.2 -1.8 37 72-108 7-44 (58)
170 PF07292 NID: Nmi/IFP 35 domai 44.3 14 0.0003 27.6 1.4 24 29-52 50-73 (88)
171 PF09707 Cas_Cas2CT1978: CRISP 43.9 48 0.0011 24.5 4.3 49 30-81 24-72 (86)
172 PRK11558 putative ssRNA endonu 42.9 41 0.00089 25.5 3.8 50 30-82 26-75 (97)
173 KOG4365 Uncharacterized conser 41.9 4.5 9.8E-05 38.6 -1.8 76 32-108 4-80 (572)
174 KOG2236 Uncharacterized conser 40.3 3.6E+02 0.0078 26.3 10.9 13 48-60 247-259 (483)
175 COG5353 Uncharacterized protei 39.2 1.4E+02 0.0031 24.5 6.6 56 31-86 87-155 (161)
176 PRK11901 hypothetical protein; 38.2 95 0.0021 28.7 6.1 57 39-97 250-308 (327)
177 PRK01178 rps24e 30S ribosomal 36.8 79 0.0017 24.0 4.6 47 41-88 29-80 (99)
178 PF07876 Dabb: Stress responsi 32.3 1.9E+02 0.0041 20.7 6.1 58 35-92 5-73 (97)
179 PRK06737 acetolactate synthase 31.3 2E+02 0.0043 20.7 5.7 63 33-98 6-69 (76)
180 KOG2295 C2H2 Zn-finger protein 30.7 6.7 0.00014 38.5 -2.6 64 28-91 228-294 (648)
181 KOG4213 RNA-binding protein La 30.1 1.1E+02 0.0025 25.9 4.8 57 31-93 111-170 (205)
182 TIGR01873 cas_CT1978 CRISPR-as 29.9 43 0.00092 24.9 2.1 50 30-82 24-74 (87)
183 KOG0156 Cytochrome P450 CYP2 s 29.3 92 0.002 30.4 4.9 60 34-102 35-97 (489)
184 PTZ00071 40S ribosomal protein 27.4 1.2E+02 0.0026 24.4 4.3 46 42-88 35-86 (132)
185 PF01071 GARS_A: Phosphoribosy 27.2 1.4E+02 0.003 25.5 5.0 45 44-92 25-69 (194)
186 PF13046 DUF3906: Protein of u 27.1 80 0.0017 22.1 2.9 33 44-78 31-63 (64)
187 PF04026 SpoVG: SpoVG; InterP 26.7 1.2E+02 0.0027 22.2 4.0 26 57-82 2-27 (84)
188 PRK10905 cell division protein 26.5 1.4E+02 0.003 27.6 5.2 58 38-97 251-310 (328)
189 PF08442 ATP-grasp_2: ATP-gras 25.0 89 0.0019 26.8 3.5 53 43-98 25-81 (202)
190 PF08544 GHMP_kinases_C: GHMP 24.9 2E+02 0.0043 19.9 4.9 41 46-92 37-78 (85)
191 PF03439 Spt5-NGN: Early trans 24.9 1.3E+02 0.0027 21.8 3.8 24 72-95 43-66 (84)
192 PF08734 GYD: GYD domain; Int 24.6 2.8E+02 0.0061 20.3 5.8 44 45-92 22-66 (91)
193 PF14401 RLAN: RimK-like ATPgr 24.3 1.6E+02 0.0034 24.1 4.7 62 29-90 85-147 (153)
194 COG2608 CopZ Copper chaperone 24.1 2.5E+02 0.0054 19.4 6.5 57 32-94 4-64 (71)
195 PF00398 RrnaAD: Ribosomal RNA 23.0 1.4E+02 0.0031 26.2 4.5 48 30-94 96-145 (262)
196 KOG3702 Nuclear polyadenylated 22.5 71 0.0015 32.2 2.7 77 28-104 508-584 (681)
197 PRK11230 glycolate oxidase sub 22.5 2.2E+02 0.0047 27.9 6.1 49 43-92 201-253 (499)
198 PF05189 RTC_insert: RNA 3'-te 22.1 1E+02 0.0022 23.0 3.0 49 33-81 12-65 (103)
199 COG0030 KsgA Dimethyladenosine 21.7 1.8E+02 0.0039 26.0 4.9 46 32-93 96-141 (259)
200 PF14111 DUF4283: Domain of un 21.3 64 0.0014 25.4 1.8 72 31-107 15-89 (153)
201 PRK13562 acetolactate synthase 20.9 3.5E+02 0.0076 19.9 5.7 66 33-101 6-73 (84)
202 cd04908 ACT_Bt0572_1 N-termina 20.1 2.8E+02 0.006 18.4 7.4 46 45-94 15-61 (66)
203 cd04883 ACT_AcuB C-terminal AC 20.1 2.8E+02 0.006 18.4 6.1 48 45-94 15-65 (72)
No 1
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.92 E-value=3.7e-24 Score=182.50 Aligned_cols=91 Identities=84% Similarity=1.421 Sum_probs=85.7
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCcee
Q 024697 23 NSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRA 102 (264)
Q Consensus 23 ~~~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l 102 (264)
+.+..|++.+|||||+|+|++.+|+|+++|++||+|+++.|+.|+.||+|||||||+|+|.|+|++||+..+.+|+||+.
T Consensus 4 ~~~~~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~a 83 (247)
T KOG0149|consen 4 NNPFGDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKA 83 (247)
T ss_pred CCCCCCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCccccccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccC-CCCC
Q 024697 103 NCNLASL-GRPR 113 (264)
Q Consensus 103 ~V~~a~~-~~~~ 113 (264)
+|++|.. .++|
T Consensus 84 NcnlA~lg~~pR 95 (247)
T KOG0149|consen 84 NCNLASLGGKPR 95 (247)
T ss_pred ccchhhhcCccC
Confidence 9999986 4433
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.85 E-value=4.7e-20 Score=150.44 Aligned_cols=84 Identities=38% Similarity=0.707 Sum_probs=77.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEe
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~ 106 (264)
....++|||+||+++++|++|+++|++||+|++|+|++|+.|+++||||||+|++.++|++||+.++ .+|+|++|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3456799999999999999999999999999999999999999999999999999999999999855 679999999999
Q ss_pred ccCCC
Q 024697 107 ASLGR 111 (264)
Q Consensus 107 a~~~~ 111 (264)
+..+.
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 96543
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.76 E-value=6.7e-18 Score=155.93 Aligned_cols=85 Identities=24% Similarity=0.340 Sum_probs=78.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEE
Q 024697 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (264)
Q Consensus 26 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V 104 (264)
.+....++|||+||++++||++|+++|++||+|++|+|++|+.|+++||||||+|.++++|++||++++ .+|.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 455678899999999999999999999999999999999999999999999999999999999999865 6699999999
Q ss_pred EeccCC
Q 024697 105 NLASLG 110 (264)
Q Consensus 105 ~~a~~~ 110 (264)
.++...
T Consensus 182 ~~a~p~ 187 (346)
T TIGR01659 182 SYARPG 187 (346)
T ss_pred eccccc
Confidence 998643
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.74 E-value=3.5e-17 Score=160.20 Aligned_cols=87 Identities=31% Similarity=0.512 Sum_probs=79.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEe
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~ 106 (264)
....++|||+||++++|+++|+++|++||+|++|+|+.| .++++||||||+|.+.++|++||++++ .+|+|++|+|.+
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~ 360 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVAL 360 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEe
Confidence 445678999999999999999999999999999999999 579999999999999999999999865 669999999999
Q ss_pred ccCCCCCCc
Q 024697 107 ASLGRPRPQ 115 (264)
Q Consensus 107 a~~~~~~~~ 115 (264)
|.+++.+..
T Consensus 361 a~~k~~~~~ 369 (562)
T TIGR01628 361 AQRKEQRRA 369 (562)
T ss_pred ccCcHHHHH
Confidence 987765543
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.74 E-value=1.8e-17 Score=152.64 Aligned_cols=85 Identities=24% Similarity=0.325 Sum_probs=78.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEe
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~ 106 (264)
.....+|||+||+++++|++|+++|++||.|++|+|++|+.|+++||||||+|.+.++|.+||+.++ ..|+||+|+|.+
T Consensus 266 ~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~ 345 (352)
T TIGR01661 266 DGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSF 345 (352)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 3445689999999999999999999999999999999999999999999999999999999999866 569999999999
Q ss_pred ccCCCC
Q 024697 107 ASLGRP 112 (264)
Q Consensus 107 a~~~~~ 112 (264)
+..+..
T Consensus 346 ~~~~~~ 351 (352)
T TIGR01661 346 KTNKAY 351 (352)
T ss_pred ccCCCC
Confidence 976643
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.73 E-value=5.1e-17 Score=150.08 Aligned_cols=84 Identities=24% Similarity=0.413 Sum_probs=75.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCC--ceeEEE
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDG--RRANCN 105 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~G--r~l~V~ 105 (264)
...++|||+||++++||++|+++|++||+|++|+|++|+.++++||||||+|++.++|++||+.++ .+|++ ++|+|+
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 356789999999999999999999999999999999999999999999999999999999999966 44655 789999
Q ss_pred eccCCCC
Q 024697 106 LASLGRP 112 (264)
Q Consensus 106 ~a~~~~~ 112 (264)
++.....
T Consensus 271 ~a~~~~~ 277 (346)
T TIGR01659 271 LAEEHGK 277 (346)
T ss_pred ECCcccc
Confidence 9875433
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.71 E-value=3.9e-17 Score=150.37 Aligned_cols=82 Identities=29% Similarity=0.453 Sum_probs=76.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 024697 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a~ 108 (264)
..++|||+|||.+++|++|+++|++||+|++|+|++|+.+|+++|||||+|.+.++|++||+.++ ..|.|++|+|+++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 35799999999999999999999999999999999999999999999999999999999999866 56999999999986
Q ss_pred CCC
Q 024697 109 LGR 111 (264)
Q Consensus 109 ~~~ 111 (264)
...
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 543
No 8
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.68 E-value=1.2e-16 Score=142.29 Aligned_cols=82 Identities=30% Similarity=0.579 Sum_probs=75.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEE
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~ 105 (264)
.....++|+|+|||+...|.||+.+|++||.|++|.||.+. .-|||||||+|++.+||++|-++++ .+|+||+|+|+
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 34567899999999999999999999999999999999984 6799999999999999999999976 55999999999
Q ss_pred eccCC
Q 024697 106 LASLG 110 (264)
Q Consensus 106 ~a~~~ 110 (264)
.|+.+
T Consensus 170 ~ATar 174 (376)
T KOG0125|consen 170 NATAR 174 (376)
T ss_pred ccchh
Confidence 99754
No 9
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=1.1e-15 Score=133.04 Aligned_cols=79 Identities=34% Similarity=0.534 Sum_probs=72.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCceeEEEec
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCNLA 107 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l~V~~a 107 (264)
.++|+||||||+.-++|++||+.|+.||.|.+|+|.+| +||+||.|++.|+|.+||..+ +.+|+|..++|.|.
T Consensus 162 p~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWG 235 (321)
T KOG0148|consen 162 PDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWG 235 (321)
T ss_pred CCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEecc
Confidence 57899999999999999999999999999999999988 689999999999999999995 57799999999998
Q ss_pred cCCCCC
Q 024697 108 SLGRPR 113 (264)
Q Consensus 108 ~~~~~~ 113 (264)
+.....
T Consensus 236 Ke~~~~ 241 (321)
T KOG0148|consen 236 KEGDDG 241 (321)
T ss_pred ccCCCC
Confidence 755443
No 10
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=5.3e-16 Score=133.32 Aligned_cols=83 Identities=29% Similarity=0.423 Sum_probs=77.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCC-cCCceeEEEe
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRANCNL 106 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~-i~Gr~l~V~~ 106 (264)
..+.++|-|.||+.+++|++|+++|.+||.|.+|.|.+|+.||.+||||||+|.++|+|.+||+.++.. .+.-.|+|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 347789999999999999999999999999999999999999999999999999999999999998766 8999999999
Q ss_pred ccCC
Q 024697 107 ASLG 110 (264)
Q Consensus 107 a~~~ 110 (264)
++++
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9653
No 11
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.65 E-value=4.6e-16 Score=109.70 Aligned_cols=69 Identities=36% Similarity=0.688 Sum_probs=64.3
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhC-CCCCcCCceeE
Q 024697 34 VFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD-PTPFIDGRRAN 103 (264)
Q Consensus 34 lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~-~~~~i~Gr~l~ 103 (264)
|||+|||.++++++|+++|++||.|+.+++..+ .+++.+++|||+|++.++|++||+. ++..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 5799999999999999999999997 55679999875
No 12
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=7.9e-16 Score=141.17 Aligned_cols=108 Identities=29% Similarity=0.428 Sum_probs=87.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHH
Q 024697 6 IPGPGSGSSSSSGFQYLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEA 85 (264)
Q Consensus 6 ~~~~~~~sssss~~~~~~~~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~ 85 (264)
.++.+.+++.+..-........|.+.-|||||-||..++|.|||++|++||.|.+|.|++|+.|+.+||||||+|.++++
T Consensus 9 ~~~~~~gs~~~~~~~~~~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~ 88 (510)
T KOG0144|consen 9 PPSPCGGSSLADNGSLDHTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKE 88 (510)
T ss_pred CCCCCCCcchhhcCCCCCCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHH
Confidence 34444454444333334444556778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCC-C-CCcCC--ceeEEEeccCCCCC
Q 024697 86 ARRACADP-T-PFIDG--RRANCNLASLGRPR 113 (264)
Q Consensus 86 A~~Ai~~~-~-~~i~G--r~l~V~~a~~~~~~ 113 (264)
|.+||..+ | ++|-| .+|.|++|+.++.+
T Consensus 89 a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er 120 (510)
T KOG0144|consen 89 ADEAINALHNQKTLPGMHHPVQVKYADGERER 120 (510)
T ss_pred HHHHHHHhhcccccCCCCcceeecccchhhhc
Confidence 99999984 3 55666 67889998866555
No 13
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=5.6e-16 Score=134.91 Aligned_cols=82 Identities=40% Similarity=0.599 Sum_probs=77.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCC-CcCCceeEEEeccC
Q 024697 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTP-FIDGRRANCNLASL 109 (264)
Q Consensus 31 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~-~i~Gr~l~V~~a~~ 109 (264)
...|||+.|..+|+-++||+.|.+||+|.+++|++|..|+|||||+||.|-+.++|++||..||. .|++|.|+-+||++
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 56899999999999999999999999999999999999999999999999999999999999875 59999999999988
Q ss_pred CCC
Q 024697 110 GRP 112 (264)
Q Consensus 110 ~~~ 112 (264)
|..
T Consensus 142 Kp~ 144 (321)
T KOG0148|consen 142 KPS 144 (321)
T ss_pred Ccc
Confidence 763
No 14
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.61 E-value=3.3e-15 Score=131.29 Aligned_cols=76 Identities=17% Similarity=0.257 Sum_probs=70.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEEeccC
Q 024697 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLASL 109 (264)
Q Consensus 31 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~a~~ 109 (264)
.++|||+||+++++|++|+++|+.||+|++|+|++|+. ++|||||+|++.++|++||..++..|.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999999853 57899999999999999998777889999999999864
No 15
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=1.7e-14 Score=132.94 Aligned_cols=81 Identities=26% Similarity=0.369 Sum_probs=73.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEE
Q 024697 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (264)
Q Consensus 26 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V 104 (264)
+...+.+.|||.||..++|||.|+++|++||+|++|+.++| ||||+|.++++|.+|++++| ++|+|..|+|
T Consensus 254 d~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEv 325 (506)
T KOG0117|consen 254 DTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEV 325 (506)
T ss_pred hhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEE
Confidence 34567899999999999999999999999999999999877 99999999999999999966 7799999999
Q ss_pred EeccCCCCCC
Q 024697 105 NLASLGRPRP 114 (264)
Q Consensus 105 ~~a~~~~~~~ 114 (264)
.+|++...++
T Consensus 326 tLAKP~~k~k 335 (506)
T KOG0117|consen 326 TLAKPVDKKK 335 (506)
T ss_pred EecCChhhhc
Confidence 9998655443
No 16
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.61 E-value=2.3e-15 Score=146.88 Aligned_cols=82 Identities=18% Similarity=0.373 Sum_probs=76.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEec
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a 107 (264)
...++|||+||+.++++++|+++|+.||+|++|+|++|+.++++||||||+|++.++|++||+.+| ..|+|+.|+|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 356799999999999999999999999999999999999999999999999999999999999977 4599999999998
Q ss_pred cCC
Q 024697 108 SLG 110 (264)
Q Consensus 108 ~~~ 110 (264)
..+
T Consensus 282 i~p 284 (612)
T TIGR01645 282 VTP 284 (612)
T ss_pred CCC
Confidence 753
No 17
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.61 E-value=1.9e-14 Score=140.09 Aligned_cols=76 Identities=24% Similarity=0.378 Sum_probs=68.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcC--CCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEE
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQF--GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~f--G~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~ 105 (264)
...++|||+||++++||++|+++|++| |+|++|++++ +||||+|++.++|++||++++ .+|+|+.|+|+
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~ 302 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVT 302 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 456899999999999999999999999 9999998764 499999999999999999865 67999999999
Q ss_pred eccCCCC
Q 024697 106 LASLGRP 112 (264)
Q Consensus 106 ~a~~~~~ 112 (264)
+|.+...
T Consensus 303 ~Akp~~~ 309 (578)
T TIGR01648 303 LAKPVDK 309 (578)
T ss_pred EccCCCc
Confidence 9976543
No 18
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.59 E-value=3e-15 Score=106.39 Aligned_cols=69 Identities=35% Similarity=0.645 Sum_probs=63.3
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeE
Q 024697 34 VFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (264)
Q Consensus 34 lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~ 103 (264)
|||+|||+++++++|+++|+.+|.|.++++.++++ ++++++|||+|.+.++|++|++.++ ..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 9999999999999999999999966 669999875
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.59 E-value=4e-15 Score=145.28 Aligned_cols=80 Identities=33% Similarity=0.591 Sum_probs=74.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEec
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a 107 (264)
...++|||+||+++++|++|+++|++||.|++|+|++|+.|+++||||||+|++.++|++||+.++ ..|+|++|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 356899999999999999999999999999999999999999999999999999999999999865 5699999999865
Q ss_pred c
Q 024697 108 S 108 (264)
Q Consensus 108 ~ 108 (264)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 4
No 20
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.58 E-value=4.1e-15 Score=125.15 Aligned_cols=87 Identities=29% Similarity=0.528 Sum_probs=79.6
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeE
Q 024697 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (264)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~ 103 (264)
|.+-+..++|-|-||...++.++|+.+|++||.|-+|.|.+|+.|+.++|||||.|.+..+|++|++.|+ .+|+|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 4445567899999999999999999999999999999999999999999999999999999999999976 679999999
Q ss_pred EEeccCCC
Q 024697 104 CNLASLGR 111 (264)
Q Consensus 104 V~~a~~~~ 111 (264)
|.+|.-..
T Consensus 87 Vq~arygr 94 (256)
T KOG4207|consen 87 VQMARYGR 94 (256)
T ss_pred ehhhhcCC
Confidence 99986443
No 21
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.57 E-value=8.6e-15 Score=143.35 Aligned_cols=77 Identities=29% Similarity=0.487 Sum_probs=72.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEeccC
Q 024697 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASL 109 (264)
Q Consensus 33 ~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a~~ 109 (264)
+|||+||+.++||++|+++|++||.|++|+|++|+.|++++|||||+|.+.++|++||+.++ ..|.|+.|+|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 79999999999999999999999999999999999999999999999999999999999866 559999999998753
No 22
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=6.2e-15 Score=121.12 Aligned_cols=75 Identities=28% Similarity=0.449 Sum_probs=69.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 024697 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a~ 108 (264)
-.++||||||+.++++.||+.+|..||.|.+|+|-+.+ .|||||||++..+|+.|+..++ +.|+|.+|+|++..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 47899999999999999999999999999999997764 7899999999999999999976 66999999999985
Q ss_pred C
Q 024697 109 L 109 (264)
Q Consensus 109 ~ 109 (264)
-
T Consensus 84 G 84 (195)
T KOG0107|consen 84 G 84 (195)
T ss_pred C
Confidence 3
No 23
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.56 E-value=2.1e-14 Score=136.94 Aligned_cols=83 Identities=25% Similarity=0.393 Sum_probs=77.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEEec
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLA 107 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~a 107 (264)
+...++|||+||+.++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.++..|.|+.|.|.++
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 34578999999999999999999999999999999999999999999999999999999999998778899999999987
Q ss_pred cCC
Q 024697 108 SLG 110 (264)
Q Consensus 108 ~~~ 110 (264)
...
T Consensus 166 ~~~ 168 (457)
T TIGR01622 166 QAE 168 (457)
T ss_pred chh
Confidence 543
No 24
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=1.5e-14 Score=127.52 Aligned_cols=80 Identities=34% Similarity=0.619 Sum_probs=75.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhC-CCCCcCCceeEEEec
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD-PTPFIDGRRANCNLA 107 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~-~~~~i~Gr~l~V~~a 107 (264)
...++|||+.|+.+++|.+|++.|++||.|+.|.|++|+.||++||||||+|++..+..+|-++ .+..|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 5679999999999999999999999999999999999999999999999999999999999988 556799999999876
Q ss_pred c
Q 024697 108 S 108 (264)
Q Consensus 108 ~ 108 (264)
.
T Consensus 179 R 179 (335)
T KOG0113|consen 179 R 179 (335)
T ss_pred c
Confidence 3
No 25
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=3.7e-15 Score=136.82 Aligned_cols=86 Identities=26% Similarity=0.417 Sum_probs=77.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCC--CcCC--ceeEEE
Q 024697 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTP--FIDG--RRANCN 105 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~--~i~G--r~l~V~ 105 (264)
+.+|||||.|+..++|+|++++|++||.|++|.|++|.. +.+|||+||+|.++|.|..||+.+|. ++.| .+|.|+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 478999999999999999999999999999999999985 99999999999999999999999773 2554 789999
Q ss_pred eccCCCCCCcc
Q 024697 106 LASLGRPRPQV 116 (264)
Q Consensus 106 ~a~~~~~~~~~ 116 (264)
+|+.++++..+
T Consensus 202 FADtqkdk~~~ 212 (510)
T KOG0144|consen 202 FADTQKDKDGK 212 (510)
T ss_pred ecccCCCchHH
Confidence 99988776544
No 26
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.54 E-value=1.8e-14 Score=140.38 Aligned_cols=78 Identities=29% Similarity=0.431 Sum_probs=68.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCc-CCceeEEEe
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFI-DGRRANCNL 106 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i-~Gr~l~V~~ 106 (264)
...++|||+||+++++|++|+++|++||.|.+|+|++| .++++||||||+|.+.|+|++||+.++ .+| .|+.|.|.+
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 35689999999999999999999999999999999999 689999999999999999999999966 445 467665543
Q ss_pred c
Q 024697 107 A 107 (264)
Q Consensus 107 a 107 (264)
+
T Consensus 135 S 135 (578)
T TIGR01648 135 S 135 (578)
T ss_pred c
Confidence 3
No 27
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.53 E-value=4.8e-14 Score=136.12 Aligned_cols=82 Identities=23% Similarity=0.462 Sum_probs=76.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEec
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a 107 (264)
...++|||+||+.++++++|+++|+.||.|+.+.|+++..+|+++|||||+|.+.++|++||+.++ ..|.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 356799999999999999999999999999999999999999999999999999999999999866 5699999999999
Q ss_pred cCC
Q 024697 108 SLG 110 (264)
Q Consensus 108 ~~~ 110 (264)
...
T Consensus 373 ~~~ 375 (509)
T TIGR01642 373 CVG 375 (509)
T ss_pred ccC
Confidence 654
No 28
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=5.4e-14 Score=122.08 Aligned_cols=85 Identities=27% Similarity=0.455 Sum_probs=78.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCC-cCCceeEEE
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRANCN 105 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~-i~Gr~l~V~ 105 (264)
.++..++|.|.-||.++|+||||.+|...|+|++|++++|+.+|.|.||+||.|-+++||++||..+|.. +..|.|+|+
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 3566779999999999999999999999999999999999999999999999999999999999997754 999999999
Q ss_pred eccCCC
Q 024697 106 LASLGR 111 (264)
Q Consensus 106 ~a~~~~ 111 (264)
+|++..
T Consensus 117 yARPSs 122 (360)
T KOG0145|consen 117 YARPSS 122 (360)
T ss_pred eccCCh
Confidence 997543
No 29
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=2.1e-14 Score=112.48 Aligned_cols=81 Identities=21% Similarity=0.318 Sum_probs=75.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEe
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~ 106 (264)
..++++||||||+..++||+|.++|+++|+|+.|.+-.|+.+....|||||+|.+.++|+.|++-.+ ..++.+.|+|.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 3578999999999999999999999999999999999999999999999999999999999999965 559999999998
Q ss_pred cc
Q 024697 107 AS 108 (264)
Q Consensus 107 a~ 108 (264)
.-
T Consensus 113 D~ 114 (153)
T KOG0121|consen 113 DA 114 (153)
T ss_pred cc
Confidence 74
No 30
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.52 E-value=5.9e-14 Score=133.89 Aligned_cols=78 Identities=33% Similarity=0.627 Sum_probs=74.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 024697 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (264)
Q Consensus 31 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a~ 108 (264)
.++|||+||+.+++|++|+++|+.||.|++|+|++|+.+|+++|||||+|.+.++|++||+.++ ..|.|+.|+|.++.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 6899999999999999999999999999999999999999999999999999999999999866 56999999999987
No 31
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.52 E-value=6.5e-14 Score=121.46 Aligned_cols=76 Identities=18% Similarity=0.174 Sum_probs=70.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEEecc
Q 024697 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLAS 108 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~a~ 108 (264)
...+|||+||++++||++|+++|+.||+|++|+|++| ++.++||||+|+++++|+.||..++..|.+++|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 3479999999999999999999999999999999998 455689999999999999999888899999999998764
No 32
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1e-14 Score=123.77 Aligned_cols=85 Identities=29% Similarity=0.475 Sum_probs=79.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEec
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a 107 (264)
.+-++||||+|.++|+|.-|...|..||.|+++++..|-.++++|||+||+|+..|+|..||..|| .+|.||.|+|++|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 356899999999999999999999999999999999999999999999999999999999999987 6799999999999
Q ss_pred cCCCCC
Q 024697 108 SLGRPR 113 (264)
Q Consensus 108 ~~~~~~ 113 (264)
.+.+.+
T Consensus 88 kP~kik 93 (298)
T KOG0111|consen 88 KPEKIK 93 (298)
T ss_pred CCcccc
Confidence 866543
No 33
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=5.2e-15 Score=122.28 Aligned_cols=81 Identities=28% Similarity=0.530 Sum_probs=74.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCC-cCCceeEEEec
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRANCNLA 107 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~-i~Gr~l~V~~a 107 (264)
.++.-||||||+.+.||.||..+|++||+|++|.+++|+.||+||||||++|++..+..-||..+|.+ |.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 35679999999999999999999999999999999999999999999999999999999899887755 99999999876
Q ss_pred cC
Q 024697 108 SL 109 (264)
Q Consensus 108 ~~ 109 (264)
..
T Consensus 113 ~~ 114 (219)
T KOG0126|consen 113 SN 114 (219)
T ss_pred cc
Confidence 53
No 34
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=5.1e-14 Score=129.84 Aligned_cols=79 Identities=28% Similarity=0.452 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCc-CCceeEEEe
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFI-DGRRANCNL 106 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i-~Gr~l~V~~ 106 (264)
...|.||||.||.++.|++|..+|++.|+|-+++||+|+.+|.+||||||+|++.|+|++||+.+ |++| .||.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 56789999999999999999999999999999999999999999999999999999999999994 5664 688888876
Q ss_pred c
Q 024697 107 A 107 (264)
Q Consensus 107 a 107 (264)
+
T Consensus 161 S 161 (506)
T KOG0117|consen 161 S 161 (506)
T ss_pred e
Confidence 5
No 35
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.49 E-value=1.2e-13 Score=119.46 Aligned_cols=79 Identities=29% Similarity=0.611 Sum_probs=75.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEeccC
Q 024697 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASL 109 (264)
Q Consensus 31 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a~~ 109 (264)
.++|||+||+.++++++|+++|.+||.|..+.+..|+.+++++|||||+|.+.++|.+||+.++ ..|.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 6999999999999999999999999999999999999899999999999999999999999977 669999999999753
No 36
>smart00362 RRM_2 RNA recognition motif.
Probab=99.49 E-value=1.7e-13 Score=95.48 Aligned_cols=71 Identities=31% Similarity=0.566 Sum_probs=65.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEE
Q 024697 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (264)
Q Consensus 33 ~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~ 105 (264)
+|||+||+.++++++|+++|++||.|.++++..++ +.++++|||+|.+.++|++|++.++ ..++|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999886 7789999999999999999999866 66999998873
No 37
>smart00360 RRM RNA recognition motif.
Probab=99.49 E-value=1.6e-13 Score=95.19 Aligned_cols=70 Identities=36% Similarity=0.620 Sum_probs=64.9
Q ss_pred EcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEE
Q 024697 36 VGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (264)
Q Consensus 36 VgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~ 105 (264)
|+||+.++++++|+++|+.||.|.++++..++.+++++|+|||+|.+.++|++|++.++ ..++|++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999999999998889999999999999999999999876 56899998874
No 38
>PLN03213 repressor of silencing 3; Provisional
Probab=99.49 E-value=1e-13 Score=129.23 Aligned_cols=79 Identities=14% Similarity=0.278 Sum_probs=70.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCH--HHHHHHHhCCC-CCcCCceeEE
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP--EAARRACADPT-PFIDGRRANC 104 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~--e~A~~Ai~~~~-~~i~Gr~l~V 104 (264)
.....+||||||++++++++|+++|..||.|.+|.|+++ || ||||||+|.+. +++.+||..++ ..++|+.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 345679999999999999999999999999999999954 67 99999999987 68999999966 5699999999
Q ss_pred EeccCC
Q 024697 105 NLASLG 110 (264)
Q Consensus 105 ~~a~~~ 110 (264)
+.|++.
T Consensus 83 NKAKP~ 88 (759)
T PLN03213 83 EKAKEH 88 (759)
T ss_pred eeccHH
Confidence 999643
No 39
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.46 E-value=1.1e-13 Score=130.44 Aligned_cols=81 Identities=32% Similarity=0.592 Sum_probs=76.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEeccCC
Q 024697 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASLG 110 (264)
Q Consensus 32 ~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a~~~ 110 (264)
+.||||||+.+++|++|.++|+..|.|.+++++.|+.||+.|||||++|.+.++|++||+.++ .++.|++|+|+++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999999999999999999999999999999999976 6799999999999754
Q ss_pred CC
Q 024697 111 RP 112 (264)
Q Consensus 111 ~~ 112 (264)
+.
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 40
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.46 E-value=1e-13 Score=125.59 Aligned_cols=84 Identities=43% Similarity=0.773 Sum_probs=79.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEEeccC
Q 024697 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLASL 109 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~a~~ 109 (264)
+.++|||++|+|+++|+.|++.|++||+|.+|.|++|+.+++++||+||+|++.+...++|....+.|+|+.|.++.|.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 78999999999999999999999999999999999999999999999999999999999999988899999999999876
Q ss_pred CCCC
Q 024697 110 GRPR 113 (264)
Q Consensus 110 ~~~~ 113 (264)
.+..
T Consensus 85 r~~~ 88 (311)
T KOG4205|consen 85 REDQ 88 (311)
T ss_pred cccc
Confidence 5543
No 41
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=7.9e-14 Score=121.47 Aligned_cols=87 Identities=28% Similarity=0.395 Sum_probs=81.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCC-cCCceeEE
Q 024697 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRANC 104 (264)
Q Consensus 26 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~-i~Gr~l~V 104 (264)
.+..+.|+|||-.||.+..+.||..+|-.||.|.+.||..|+.|..||+|+||.|++..+|+.||..||.+ |+-|+|+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 44567899999999999999999999999999999999999999999999999999999999999998876 99999999
Q ss_pred EeccCCCC
Q 024697 105 NLASLGRP 112 (264)
Q Consensus 105 ~~a~~~~~ 112 (264)
.+.++++.
T Consensus 360 QLKRPkda 367 (371)
T KOG0146|consen 360 QLKRPKDA 367 (371)
T ss_pred hhcCcccc
Confidence 99876653
No 42
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=4e-13 Score=106.26 Aligned_cols=89 Identities=24% Similarity=0.359 Sum_probs=80.9
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeE
Q 024697 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (264)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~ 103 (264)
|......-.|||.++..+.+|++|.+.|..||+|+.+.+..|+.||-.|||++|+|++.++|++||..+| ..|.|..|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 4445566789999999999999999999999999999999999999999999999999999999999977 669999999
Q ss_pred EEeccCCCCC
Q 024697 104 CNLASLGRPR 113 (264)
Q Consensus 104 V~~a~~~~~~ 113 (264)
|.|+..+.+.
T Consensus 146 VDw~Fv~gp~ 155 (170)
T KOG0130|consen 146 VDWCFVKGPE 155 (170)
T ss_pred EEEEEecCCc
Confidence 9999866543
No 43
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.42 E-value=9.2e-13 Score=127.00 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=70.2
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEE
Q 024697 28 DTTYTKVFVGGLAW-ETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (264)
Q Consensus 28 ~~~~~~lfVgnLp~-~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~ 105 (264)
....++|||+||++ ++|+++|+++|+.||.|++|+|++++ +|||||+|.+.++|++||+.++ ..|.|++|+|.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 34678999999998 69999999999999999999999874 6899999999999999999865 56999999999
Q ss_pred eccCC
Q 024697 106 LASLG 110 (264)
Q Consensus 106 ~a~~~ 110 (264)
++...
T Consensus 347 ~s~~~ 351 (481)
T TIGR01649 347 PSKQQ 351 (481)
T ss_pred Ecccc
Confidence 98654
No 44
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.42 E-value=7.8e-13 Score=127.49 Aligned_cols=75 Identities=19% Similarity=0.260 Sum_probs=67.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC--C-CCcCCceeEEEec
Q 024697 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP--T-PFIDGRRANCNLA 107 (264)
Q Consensus 31 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~--~-~~i~Gr~l~V~~a 107 (264)
++.|||+||+++++|++|+++|++||.|++|+|+++ |+||||+|++.++|++||+.+ + ..|+|+.|+|.++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 579999999999999999999999999999999865 579999999999999999862 3 5699999999999
Q ss_pred cCCC
Q 024697 108 SLGR 111 (264)
Q Consensus 108 ~~~~ 111 (264)
..++
T Consensus 76 ~~~~ 79 (481)
T TIGR01649 76 TSQE 79 (481)
T ss_pred CCcc
Confidence 7543
No 45
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.42 E-value=1.4e-12 Score=91.30 Aligned_cols=73 Identities=32% Similarity=0.603 Sum_probs=66.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCC-cCCceeEEEe
Q 024697 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRANCNL 106 (264)
Q Consensus 33 ~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~-i~Gr~l~V~~ 106 (264)
+|+|+||+.++++++|+++|+.+|.|..+.+..++.+ +.+++|||+|.+.++|..|++.++.. ++|++|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988754 77999999999999999999997755 9999998864
No 46
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.39 E-value=4.4e-13 Score=117.97 Aligned_cols=71 Identities=30% Similarity=0.560 Sum_probs=66.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCC-CcCCceeEEEeccCC
Q 024697 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTP-FIDGRRANCNLASLG 110 (264)
Q Consensus 32 ~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~-~i~Gr~l~V~~a~~~ 110 (264)
.+|||||||.++++.+|+.+|++||+|++|+|+++ ||||+.++.+.++.||..+++ .|+|..|+|+.++.|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 48999999999999999999999999999999987 999999999999999998664 599999999988766
No 47
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=2.3e-12 Score=97.61 Aligned_cols=87 Identities=20% Similarity=0.337 Sum_probs=74.8
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCC-cCC
Q 024697 21 YLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDG 99 (264)
Q Consensus 21 ~~~~~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~-i~G 99 (264)
..+...+.+-++-|||.|||.++|.|++.++|.+||.|..++|-..+. .+|-|||.|++..+|++||+.+... +++
T Consensus 8 ~~~~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ 84 (124)
T KOG0114|consen 8 KQNIRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDN 84 (124)
T ss_pred cCCCCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCC
Confidence 344445566788999999999999999999999999999999976654 4899999999999999999997755 999
Q ss_pred ceeEEEeccCC
Q 024697 100 RRANCNLASLG 110 (264)
Q Consensus 100 r~l~V~~a~~~ 110 (264)
+.|.|-+-...
T Consensus 85 ryl~vlyyq~~ 95 (124)
T KOG0114|consen 85 RYLVVLYYQPE 95 (124)
T ss_pred ceEEEEecCHH
Confidence 99999876543
No 48
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=2.9e-12 Score=106.44 Aligned_cols=79 Identities=23% Similarity=0.392 Sum_probs=68.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 024697 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a~ 108 (264)
..++|||+|||.+|.|.+|+++|.+||.|.+|.|... -....||||+|++..+|+.||..-+ -.++|.+|+|+++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 4689999999999999999999999999999988433 2346799999999999999999855 55999999999996
Q ss_pred CCC
Q 024697 109 LGR 111 (264)
Q Consensus 109 ~~~ 111 (264)
..+
T Consensus 82 ggr 84 (241)
T KOG0105|consen 82 GGR 84 (241)
T ss_pred CCC
Confidence 554
No 49
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.37 E-value=5.6e-13 Score=110.31 Aligned_cols=80 Identities=29% Similarity=0.405 Sum_probs=75.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCC-cCCceeEEEec
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRANCNLA 107 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~-i~Gr~l~V~~a 107 (264)
....+|||+||+..++|+.|.++|-+.|.|..+.+.+|+.+.+.+|||||+|.++|+|+=||+.++.+ |-||+|+|+.+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 45679999999999999999999999999999999999999999999999999999999999998844 99999999998
Q ss_pred c
Q 024697 108 S 108 (264)
Q Consensus 108 ~ 108 (264)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 6
No 50
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.36 E-value=1.7e-11 Score=111.19 Aligned_cols=86 Identities=31% Similarity=0.585 Sum_probs=80.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEEeccC
Q 024697 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLASL 109 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~a~~ 109 (264)
+.++|||++|+.+++|++|++.|++||.|.++.++.|+.+.+.+||+||+|++++++++++...-+.|+++.++|+.|.+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccc
Confidence 46799999999999999999999999999999999999999999999999999999999999988899999999999987
Q ss_pred CCCCCc
Q 024697 110 GRPRPQ 115 (264)
Q Consensus 110 ~~~~~~ 115 (264)
++....
T Consensus 176 k~~~~~ 181 (311)
T KOG4205|consen 176 KEVMQS 181 (311)
T ss_pred hhhccc
Confidence 765543
No 51
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=3.2e-12 Score=120.57 Aligned_cols=87 Identities=33% Similarity=0.523 Sum_probs=77.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC----C---CCc
Q 024697 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP----T---PFI 97 (264)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~----~---~~i 97 (264)
.++....++|||.||++++||++|.+.|++||+|..+.|+.++.|++++|.|||.|.+.++|.+||+.- . ..|
T Consensus 286 ~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll 365 (678)
T KOG0127|consen 286 RENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLL 365 (678)
T ss_pred cccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEE
Confidence 455566789999999999999999999999999999999999999999999999999999999999763 1 248
Q ss_pred CCceeEEEeccCCC
Q 024697 98 DGRRANCNLASLGR 111 (264)
Q Consensus 98 ~Gr~l~V~~a~~~~ 111 (264)
+||.|+|.+|..++
T Consensus 366 ~GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 366 DGRLLKVTLAVTRK 379 (678)
T ss_pred eccEEeeeeccchH
Confidence 99999999986543
No 52
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=4e-12 Score=118.39 Aligned_cols=80 Identities=33% Similarity=0.550 Sum_probs=72.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEeccCCC
Q 024697 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASLGR 111 (264)
Q Consensus 33 ~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a~~~~ 111 (264)
.|||.||+.++|.++|.++|+.||+|++|+|.+|.+ | +||| ||+|+++++|++||+.+| ..+.+++|.|.....+.
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKE 154 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchh
Confidence 399999999999999999999999999999999974 5 9999 999999999999999966 55999999999988766
Q ss_pred CCCc
Q 024697 112 PRPQ 115 (264)
Q Consensus 112 ~~~~ 115 (264)
.|..
T Consensus 155 er~~ 158 (369)
T KOG0123|consen 155 EREA 158 (369)
T ss_pred hhcc
Confidence 5543
No 53
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=9.8e-12 Score=108.15 Aligned_cols=87 Identities=25% Similarity=0.359 Sum_probs=78.6
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCC-cCCcee
Q 024697 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRA 102 (264)
Q Consensus 24 ~~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~-i~Gr~l 102 (264)
.+..+...--|||-||..+.+|.-|..+|..||.|..|+|++|..|.++|||+||++.+-++|..||..+|.. +.+|.|
T Consensus 271 lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvL 350 (360)
T KOG0145|consen 271 LPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL 350 (360)
T ss_pred cCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEE
Confidence 3444556678999999999999999999999999999999999999999999999999999999999997754 999999
Q ss_pred EEEeccCC
Q 024697 103 NCNLASLG 110 (264)
Q Consensus 103 ~V~~a~~~ 110 (264)
.|.+...+
T Consensus 351 QVsFKtnk 358 (360)
T KOG0145|consen 351 QVSFKTNK 358 (360)
T ss_pred EEEEecCC
Confidence 99987654
No 54
>smart00361 RRM_1 RNA recognition motif.
Probab=99.31 E-value=6.7e-12 Score=89.76 Aligned_cols=62 Identities=29% Similarity=0.513 Sum_probs=54.7
Q ss_pred CHHHHHHHhh----cCCCEEEEE-EeecCCC--CCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEE
Q 024697 44 QSETMRRYFE----QFGEILEAV-VITDKNT--GRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (264)
Q Consensus 44 te~~L~~~F~----~fG~I~~v~-v~~d~~t--g~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~ 105 (264)
.+++|+++|+ +||.|.++. |+.++.+ ++++||+||+|.+.++|.+||+.++ ..++|+.|+|.
T Consensus 1 ~~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 1 KDEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred CchhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 3678999998 999999995 8888777 9999999999999999999999855 67999999873
No 55
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.30 E-value=1.9e-12 Score=112.85 Aligned_cols=85 Identities=29% Similarity=0.457 Sum_probs=75.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC--CCcCC--ceeEEE
Q 024697 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT--PFIDG--RRANCN 105 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~--~~i~G--r~l~V~ 105 (264)
+.+|||||.|...-.|||++.+|..||.|++|.|++..+ |.+|||+||.|.+..||+.||..++ .++-| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 678999999999999999999999999999999999985 9999999999999999999999865 33444 679999
Q ss_pred eccCCCCCCc
Q 024697 106 LASLGRPRPQ 115 (264)
Q Consensus 106 ~a~~~~~~~~ 115 (264)
+++.+++|..
T Consensus 97 ~ADTdkER~l 106 (371)
T KOG0146|consen 97 FADTDKERTL 106 (371)
T ss_pred eccchHHHHH
Confidence 9987776643
No 56
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.28 E-value=4.9e-12 Score=104.75 Aligned_cols=84 Identities=24% Similarity=0.436 Sum_probs=76.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCEEEE-EEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 024697 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEA-VVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (264)
Q Consensus 31 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v-~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a~ 108 (264)
..+|||+||+++++|..|.++|+.||.|.+. +|++|..||+++||+||.|.+.|.+.+||+.++ ..++.++|.|.++.
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAF 175 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEE
Confidence 3799999999999999999999999988764 899999999999999999999999999999966 66999999999998
Q ss_pred CCCCCC
Q 024697 109 LGRPRP 114 (264)
Q Consensus 109 ~~~~~~ 114 (264)
++..+.
T Consensus 176 k~~~kg 181 (203)
T KOG0131|consen 176 KKDTKG 181 (203)
T ss_pred ecCCCc
Confidence 665443
No 57
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.26 E-value=3.3e-11 Score=113.14 Aligned_cols=83 Identities=25% Similarity=0.395 Sum_probs=71.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEEec
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLA 107 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~a 107 (264)
......|||+|||.++++++|+++|..||.|++..|......++..+||||+|.+.++++.||+..-..|++++|.|+..
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEK 364 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEec
Confidence 34455699999999999999999999999999988876543456669999999999999999999866699999999987
Q ss_pred cCC
Q 024697 108 SLG 110 (264)
Q Consensus 108 ~~~ 110 (264)
...
T Consensus 365 ~~~ 367 (419)
T KOG0116|consen 365 RPG 367 (419)
T ss_pred ccc
Confidence 544
No 58
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=7.8e-12 Score=112.73 Aligned_cols=82 Identities=29% Similarity=0.464 Sum_probs=76.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEe
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~ 106 (264)
....+.|||..|.+-+++++|+-+|+.||.|.+|.|++|+.||.+..||||+|++.+++++|.-+|+ ..|+.++|.|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 4566899999999999999999999999999999999999999999999999999999999998865 669999999998
Q ss_pred ccC
Q 024697 107 ASL 109 (264)
Q Consensus 107 a~~ 109 (264)
+..
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 753
No 59
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.26 E-value=1.5e-11 Score=113.55 Aligned_cols=80 Identities=19% Similarity=0.407 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHh-hcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCC-CcCCceeEEEe
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYF-EQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTP-FIDGRRANCNL 106 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F-~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~-~i~Gr~l~V~~ 106 (264)
...+.+||.|||.++.+.+|+++| ++.|+|+.|.++.|. +||+||||.|+|+++|.++||++.+++ +++||.|.|+.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 456679999999999999999999 578999999999997 599999999999999999999999885 59999999987
Q ss_pred ccC
Q 024697 107 ASL 109 (264)
Q Consensus 107 a~~ 109 (264)
...
T Consensus 121 d~d 123 (608)
T KOG4212|consen 121 DHD 123 (608)
T ss_pred cCc
Confidence 643
No 60
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=1.6e-11 Score=110.36 Aligned_cols=81 Identities=32% Similarity=0.480 Sum_probs=72.9
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhC-CCC-CcCCc
Q 024697 23 NSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD-PTP-FIDGR 100 (264)
Q Consensus 23 ~~~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~-~~~-~i~Gr 100 (264)
-.|.+|...++|||++|.+.++|.+|+++|.+||+|+++.++.. +++|||+|.++++|++|.++ .++ .|+|+
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecce
Confidence 34667888999999999999999999999999999999999776 45999999999999999988 454 49999
Q ss_pred eeEEEeccC
Q 024697 101 RANCNLASL 109 (264)
Q Consensus 101 ~l~V~~a~~ 109 (264)
+|+|.|...
T Consensus 294 Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 RLKIKWGRP 302 (377)
T ss_pred EEEEEeCCC
Confidence 999999976
No 61
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.25 E-value=6e-12 Score=118.86 Aligned_cols=79 Identities=33% Similarity=0.595 Sum_probs=73.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEeccCC
Q 024697 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASLG 110 (264)
Q Consensus 32 ~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a~~~ 110 (264)
.+||||||.++++|++|+.+|+.||.|+.|.+++|..||++|||+||+|.+.++|.+|++.+| .+|-|+.|+|...+.+
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 349999999999999999999999999999999999999999999999999999999999966 4599999999877543
No 62
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=1.9e-11 Score=115.45 Aligned_cols=81 Identities=25% Similarity=0.447 Sum_probs=73.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEeccC
Q 024697 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASL 109 (264)
Q Consensus 31 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a~~ 109 (264)
-.+|.|.||||.+.+++|+.+|+.||.|.+|.|.+.+. |+-+|||||.|.+..+|.+||+.+| .+|+||+|-|.||..
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 56899999999999999999999999999999998875 5556999999999999999999965 779999999999976
Q ss_pred CCC
Q 024697 110 GRP 112 (264)
Q Consensus 110 ~~~ 112 (264)
+..
T Consensus 196 Kd~ 198 (678)
T KOG0127|consen 196 KDT 198 (678)
T ss_pred ccc
Confidence 643
No 63
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=6.1e-12 Score=113.84 Aligned_cols=77 Identities=32% Similarity=0.605 Sum_probs=72.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEec
Q 024697 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (264)
Q Consensus 31 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a 107 (264)
-|+||||.|.+++.||.||..|..||.|+++.+-+|+.|+++|||+||+|+-+|.|+-|++.|| .+++||.|+|..-
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 5899999999999999999999999999999999999999999999999999999999999977 5699999999743
No 64
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.22 E-value=2.4e-09 Score=104.80 Aligned_cols=78 Identities=21% Similarity=0.404 Sum_probs=70.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEeccC
Q 024697 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASL 109 (264)
Q Consensus 31 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a~~ 109 (264)
+++||||.|+.+++|.||+.+|+.||+|.+|.++-. +|||||+...+++|++|+.++. ..+.++.|+|.||..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 689999999999999999999999999999998765 6799999999999999999965 559999999999976
Q ss_pred CCCCC
Q 024697 110 GRPRP 114 (264)
Q Consensus 110 ~~~~~ 114 (264)
+-.+.
T Consensus 495 ~G~ks 499 (894)
T KOG0132|consen 495 KGPKS 499 (894)
T ss_pred CCcch
Confidence 55443
No 65
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.20 E-value=4e-11 Score=81.71 Aligned_cols=55 Identities=27% Similarity=0.549 Sum_probs=48.2
Q ss_pred HHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEec
Q 024697 48 MRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (264)
Q Consensus 48 L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a 107 (264)
|+++|++||+|+++++..++ +++|||+|.+.++|++|++.++ ..++|++|+|++|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999997663 6899999999999999999855 5699999999985
No 66
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.16 E-value=4.1e-11 Score=105.67 Aligned_cols=76 Identities=26% Similarity=0.473 Sum_probs=69.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCceeEEEe
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCNL 106 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l~V~~ 106 (264)
....++|+|+||.+.++.+|||+.|++||.|.+|+|++| |+||+|+-.++|..||+.+ |.++.|++++|.+
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 456789999999999999999999999999999999987 9999999999999999985 5779999999999
Q ss_pred ccCCC
Q 024697 107 ASLGR 111 (264)
Q Consensus 107 a~~~~ 111 (264)
++.+.
T Consensus 147 stsrl 151 (346)
T KOG0109|consen 147 STSRL 151 (346)
T ss_pred ecccc
Confidence 87543
No 67
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.15 E-value=1.1e-10 Score=112.67 Aligned_cols=78 Identities=18% Similarity=0.279 Sum_probs=62.7
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcC------------CCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhC
Q 024697 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQF------------GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92 (264)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~f------------G~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~ 92 (264)
+..+...++|||+||+.++|+++|+++|..+ +.|..+.+ ++.+|||||+|.+.++|++||+.
T Consensus 169 ~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~l 242 (509)
T TIGR01642 169 QQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMAL 242 (509)
T ss_pred ccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhcC
Confidence 3445678899999999999999999999875 23333333 45689999999999999999975
Q ss_pred CCCCcCCceeEEEecc
Q 024697 93 PTPFIDGRRANCNLAS 108 (264)
Q Consensus 93 ~~~~i~Gr~l~V~~a~ 108 (264)
++..|.|+.|+|....
T Consensus 243 ~g~~~~g~~l~v~r~~ 258 (509)
T TIGR01642 243 DSIIYSNVFLKIRRPH 258 (509)
T ss_pred CCeEeeCceeEecCcc
Confidence 5567999999997543
No 68
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.13 E-value=2.2e-10 Score=108.76 Aligned_cols=82 Identities=23% Similarity=0.416 Sum_probs=74.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEec
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a 107 (264)
.-.++|||.+|...+...+|+.+|++||+|+-.+|+++..+--.++|+||++.+.++|.+||+.++ .+|.|+.|.|+.+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 346799999999999999999999999999999999998777789999999999999999999987 5599999999988
Q ss_pred cCC
Q 024697 108 SLG 110 (264)
Q Consensus 108 ~~~ 110 (264)
+..
T Consensus 483 KNE 485 (940)
T KOG4661|consen 483 KNE 485 (940)
T ss_pred ccC
Confidence 543
No 69
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.10 E-value=2.6e-10 Score=96.22 Aligned_cols=86 Identities=24% Similarity=0.365 Sum_probs=76.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcC-CCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCcee
Q 024697 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQF-GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRA 102 (264)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~f-G~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l 102 (264)
........-++|..|+.-+.+.+|..+|.+| |.++++++-+++.||.|||||||+|++.|.|+-|-+.|| ..+.++.|
T Consensus 43 ~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL 122 (214)
T KOG4208|consen 43 KPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLL 122 (214)
T ss_pred CCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhee
Confidence 4445667789999999999999999999998 788888888999999999999999999999999999976 55899999
Q ss_pred EEEeccCC
Q 024697 103 NCNLASLG 110 (264)
Q Consensus 103 ~V~~a~~~ 110 (264)
.|.+-.+.
T Consensus 123 ~c~vmppe 130 (214)
T KOG4208|consen 123 ECHVMPPE 130 (214)
T ss_pred eeEEeCch
Confidence 99987655
No 70
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.06 E-value=3.1e-10 Score=102.89 Aligned_cols=81 Identities=20% Similarity=0.442 Sum_probs=75.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCC-cCCceeEEEe
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRANCNL 106 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~-i~Gr~l~V~~ 106 (264)
-...++|||..+..+.+|+||+.+|+.||+|+.|++-++..++.+|||+|++|.+..+...||..||.+ ++|.-|+|-.
T Consensus 207 Ak~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 207 AKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 286 (544)
T ss_pred HHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccc
Confidence 356789999999999999999999999999999999999988999999999999999999999999966 9999999987
Q ss_pred cc
Q 024697 107 AS 108 (264)
Q Consensus 107 a~ 108 (264)
+.
T Consensus 287 ~v 288 (544)
T KOG0124|consen 287 CV 288 (544)
T ss_pred cc
Confidence 64
No 71
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=2.1e-10 Score=106.90 Aligned_cols=90 Identities=31% Similarity=0.515 Sum_probs=79.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeE
Q 024697 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (264)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~ 103 (264)
+.......+|||.||+..++++.|+++|+.+|+|++++|+.+. .++++||+||+|.+.++|++|+..++ .++.++.|.
T Consensus 264 ~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~-~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~ 342 (369)
T KOG0123|consen 264 RSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDE-NGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLY 342 (369)
T ss_pred ccccccccccccccCccccchhHHHHHHhcccceeeEEEEecc-CCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchh
Confidence 3345677899999999999999999999999999999999997 59999999999999999999999965 679999999
Q ss_pred EEeccCCCCCCc
Q 024697 104 CNLASLGRPRPQ 115 (264)
Q Consensus 104 V~~a~~~~~~~~ 115 (264)
|.++..+..++.
T Consensus 343 vav~qr~~~r~~ 354 (369)
T KOG0123|consen 343 VAVAQRKEDRRA 354 (369)
T ss_pred hhHHhhhccchh
Confidence 999975555443
No 72
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.00 E-value=1.3e-09 Score=93.21 Aligned_cols=81 Identities=26% Similarity=0.438 Sum_probs=71.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHH----HhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCC-cCCcee
Q 024697 28 DTTYTKVFVGGLAWETQSETMRR----YFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRA 102 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~----~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~-i~Gr~l 102 (264)
...+.+|||.||.+.+..++|++ +|++||+|.+|...+ |.+.+|-|||.|.+.+.|..|++.++.. +-||.+
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchh
Confidence 44556999999999999999998 999999999987754 5889999999999999999999997765 999999
Q ss_pred EEEeccCCC
Q 024697 103 NCNLASLGR 111 (264)
Q Consensus 103 ~V~~a~~~~ 111 (264)
+|.+|..+.
T Consensus 83 riqyA~s~s 91 (221)
T KOG4206|consen 83 RIQYAKSDS 91 (221)
T ss_pred heecccCcc
Confidence 999997664
No 73
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.99 E-value=1e-09 Score=101.57 Aligned_cols=78 Identities=28% Similarity=0.464 Sum_probs=69.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCC-CcCCceeE
Q 024697 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTP-FIDGRRAN 103 (264)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~-~i~Gr~l~ 103 (264)
.-...+.|+|||.|||.++|+..||+-|..||.|+.++|+.. |++|| .|.|.++++|++||+.++. .|+||.|+
T Consensus 530 ~gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~---GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~ 604 (608)
T KOG4212|consen 530 VGAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMEN---GKSKG--VVRFFSPEDAERACALMNGSRLDGRNIK 604 (608)
T ss_pred ccccccccEEEEecCCccccHHHHHHHHHhccceehhhhhcc---CCccc--eEEecCHHHHHHHHHHhccCcccCceee
Confidence 334567899999999999999999999999999999999554 88898 8999999999999999775 59999999
Q ss_pred EEec
Q 024697 104 CNLA 107 (264)
Q Consensus 104 V~~a 107 (264)
|.+.
T Consensus 605 V~y~ 608 (608)
T KOG4212|consen 605 VTYF 608 (608)
T ss_pred eeeC
Confidence 9863
No 74
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.97 E-value=6.1e-10 Score=96.71 Aligned_cols=88 Identities=32% Similarity=0.509 Sum_probs=78.7
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCC
Q 024697 21 YLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDG 99 (264)
Q Consensus 21 ~~~~~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~G 99 (264)
-.+..+-+++..+||+|.|..+++++.|-..|.+|-.-...++++|+.||++|||+||.|.+.+++.+|+.+|+ +.++.
T Consensus 180 dPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgs 259 (290)
T KOG0226|consen 180 DPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGS 259 (290)
T ss_pred CcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccccc
Confidence 34445667788999999999999999999999999999999999999999999999999999999999999977 56999
Q ss_pred ceeEEEecc
Q 024697 100 RRANCNLAS 108 (264)
Q Consensus 100 r~l~V~~a~ 108 (264)
+.|++....
T Consensus 260 rpiklRkS~ 268 (290)
T KOG0226|consen 260 RPIKLRKSE 268 (290)
T ss_pred chhHhhhhh
Confidence 998876554
No 75
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.90 E-value=4.5e-09 Score=92.19 Aligned_cols=83 Identities=30% Similarity=0.446 Sum_probs=74.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCC-cCCceeEEE
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRANCN 105 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~-i~Gr~l~V~ 105 (264)
.++..++|.|.||+..|+++||+++|+.||.++.+-|..|+ +|++.|.|-|.|...++|++||+..+.+ ++|+.|++.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 45566899999999999999999999999999999999998 5999999999999999999999995545 999999999
Q ss_pred eccCC
Q 024697 106 LASLG 110 (264)
Q Consensus 106 ~a~~~ 110 (264)
+....
T Consensus 158 ~i~~~ 162 (243)
T KOG0533|consen 158 IISSP 162 (243)
T ss_pred EecCc
Confidence 87644
No 76
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.90 E-value=5.1e-09 Score=91.68 Aligned_cols=85 Identities=24% Similarity=0.308 Sum_probs=78.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEE
Q 024697 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCN 105 (264)
Q Consensus 26 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~ 105 (264)
..+.+.+.+||+|++..++.++++..|+.||.|..+.|..|+.++.+|||+||+|.+.+.+++++..+...|.++.|.|.
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVT 175 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceee
Confidence 45678999999999999999999999999999999999999999999999999999999999999965677999999999
Q ss_pred eccCC
Q 024697 106 LASLG 110 (264)
Q Consensus 106 ~a~~~ 110 (264)
+....
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 88654
No 77
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.87 E-value=1.6e-09 Score=105.16 Aligned_cols=84 Identities=25% Similarity=0.449 Sum_probs=75.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCC-cCCceeEEEe
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRANCNL 106 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~-i~Gr~l~V~~ 106 (264)
+...++|+|.|||+..+..+++++|..||.|.+|+|......+.++|||||+|-+.++|.+|+..+..+ +-||+|.++|
T Consensus 610 kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEw 689 (725)
T KOG0110|consen 610 KKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEW 689 (725)
T ss_pred ccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheeh
Confidence 334789999999999999999999999999999999887556778999999999999999999997644 9999999999
Q ss_pred ccCCC
Q 024697 107 ASLGR 111 (264)
Q Consensus 107 a~~~~ 111 (264)
|....
T Consensus 690 A~~d~ 694 (725)
T KOG0110|consen 690 AKSDN 694 (725)
T ss_pred hccch
Confidence 97553
No 78
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.84 E-value=7.1e-09 Score=100.81 Aligned_cols=80 Identities=30% Similarity=0.534 Sum_probs=70.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCC---CccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEE
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTG---RSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg---~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V 104 (264)
...++|||.||+++++.++|+.+|.+.|.|.++.|.+.++.. .|.|||||+|.+.++|++|++.++ ..|+|+.|.|
T Consensus 513 ~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~l 592 (725)
T KOG0110|consen 513 ETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLEL 592 (725)
T ss_pred ccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEE
Confidence 344459999999999999999999999999999887765422 256999999999999999999987 6699999999
Q ss_pred Eecc
Q 024697 105 NLAS 108 (264)
Q Consensus 105 ~~a~ 108 (264)
+++.
T Consensus 593 k~S~ 596 (725)
T KOG0110|consen 593 KISE 596 (725)
T ss_pred Eecc
Confidence 9986
No 79
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.83 E-value=4.5e-08 Score=83.83 Aligned_cols=88 Identities=22% Similarity=0.262 Sum_probs=69.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEE-eecCCCCCccceEEEEeCCHHHHHHHHhCCCCC-cC---Cc
Q 024697 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVV-ITDKNTGRSKGYGFVTFREPEAARRACADPTPF-ID---GR 100 (264)
Q Consensus 26 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v-~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~-i~---Gr 100 (264)
+.....++|||.+||.++...||..+|..|---+.+.| .+++.....+-+|||+|.+..+|..|+..+|.+ ++ +.
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCc
Confidence 33456899999999999999999999999876666654 334433345689999999999999999997754 43 78
Q ss_pred eeEEEeccCCCCC
Q 024697 101 RANCNLASLGRPR 113 (264)
Q Consensus 101 ~l~V~~a~~~~~~ 113 (264)
.|++++|+...++
T Consensus 109 tLhiElAKSNtK~ 121 (284)
T KOG1457|consen 109 TLHIELAKSNTKR 121 (284)
T ss_pred eeEeeehhcCccc
Confidence 8999999755433
No 80
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.81 E-value=1.6e-07 Score=85.03 Aligned_cols=73 Identities=19% Similarity=0.416 Sum_probs=62.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCC--CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEE
Q 024697 32 TKVFVGGLAWETQSETMRRYFEQFG--EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (264)
Q Consensus 32 ~~lfVgnLp~~vte~~L~~~F~~fG--~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V 104 (264)
--+|||||-|.+|++||.+.+..-| .|.++|+..++.+|.|||||+|...+..+.++.++.+- ++|.|..-.|
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 4689999999999999988887665 67888888999999999999999999999999998865 6688875444
No 81
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.69 E-value=7.9e-08 Score=90.34 Aligned_cols=82 Identities=20% Similarity=0.302 Sum_probs=70.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEEec
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLA 107 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~a 107 (264)
..+...|-+.+|||++|++||.+||+.+ .|+.+++.++ +|+..|-|||+|.+.|++++|++++...+..|-|+|-.+
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTA 83 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEecc--CCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEcc
Confidence 4456678888999999999999999998 5677666555 799999999999999999999999888899999999887
Q ss_pred cCCCC
Q 024697 108 SLGRP 112 (264)
Q Consensus 108 ~~~~~ 112 (264)
..++.
T Consensus 84 ~~~e~ 88 (510)
T KOG4211|consen 84 GGAEA 88 (510)
T ss_pred CCccc
Confidence 55443
No 82
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.58 E-value=3.3e-08 Score=94.06 Aligned_cols=72 Identities=29% Similarity=0.367 Sum_probs=64.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeE
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~ 103 (264)
.+...++|+|-|||.+|++++|+++|+.||+|++++. |-..+|..||+|.|..+|++|+++++ .+|.|++|+
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3667789999999999999999999999999999655 44558999999999999999999976 669999888
No 83
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.56 E-value=6.1e-08 Score=83.48 Aligned_cols=70 Identities=29% Similarity=0.572 Sum_probs=62.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEeccC
Q 024697 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASL 109 (264)
Q Consensus 32 ~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a~~ 109 (264)
.+|||++|++.+.+.+|++||..||.|.++.+. .||+||+|.+..+|+.||..++ ++|.+.++.|+++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 479999999999999999999999999999873 3599999999999999999865 678888888888854
No 84
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.54 E-value=2.7e-07 Score=83.49 Aligned_cols=81 Identities=19% Similarity=0.312 Sum_probs=72.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEE--------EEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcC
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILE--------AVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFID 98 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~--------v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~ 98 (264)
...+++|||.|||.++|.+++.++|++||-|.+ |+|-++.. |+-||=|.++|-..++++-||+.++ ..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc
Confidence 456778999999999999999999999998853 78888875 9999999999999999999999976 5699
Q ss_pred CceeEEEeccC
Q 024697 99 GRRANCNLASL 109 (264)
Q Consensus 99 Gr~l~V~~a~~ 109 (264)
|+.|+|+.|.-
T Consensus 210 g~~~rVerAkf 220 (382)
T KOG1548|consen 210 GKKLRVERAKF 220 (382)
T ss_pred CcEEEEehhhh
Confidence 99999998863
No 85
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.51 E-value=4e-08 Score=83.93 Aligned_cols=77 Identities=13% Similarity=0.188 Sum_probs=68.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCC-cCCceeEEEecc
Q 024697 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRANCNLAS 108 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~-i~Gr~l~V~~a~ 108 (264)
..++|||+|+...|+|+.|.++|.+-|.|.+|.|..+++ ++.| ||||.|+++.++.-|++.+|.. +.++.|.|.+-.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 457999999999999999999999999999999988875 7777 9999999999999999997754 888888887654
No 86
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.49 E-value=3.8e-08 Score=93.42 Aligned_cols=88 Identities=23% Similarity=0.332 Sum_probs=79.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEE
Q 024697 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCN 105 (264)
Q Consensus 26 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~ 105 (264)
.++.+.++||+--|...+++.+|.+||+.+|.|.+|.+|.|+.++++||.++|+|.|.+.+..||...+..+.|.+|.|.
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQ 253 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEec
Confidence 34567789999999999999999999999999999999999999999999999999999999999888888999999999
Q ss_pred eccCCCCC
Q 024697 106 LASLGRPR 113 (264)
Q Consensus 106 ~a~~~~~~ 113 (264)
.....+.+
T Consensus 254 ~sEaeknr 261 (549)
T KOG0147|consen 254 LSEAEKNR 261 (549)
T ss_pred ccHHHHHH
Confidence 87654443
No 87
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.45 E-value=4.8e-07 Score=88.30 Aligned_cols=83 Identities=22% Similarity=0.347 Sum_probs=73.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCC---CCCccceEEEEeCCHHHHHHHHhCCC-CCcCCce
Q 024697 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKN---TGRSKGYGFVTFREPEAARRACADPT-PFIDGRR 101 (264)
Q Consensus 26 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~---tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~ 101 (264)
++|...++|||+||+..++|+.|-..|..||.|..++|++.+. ..+.+-|+||.|-+..+|++|++.++ .++.+..
T Consensus 169 dgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e 248 (877)
T KOG0151|consen 169 DGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYE 248 (877)
T ss_pred CCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeee
Confidence 4467889999999999999999999999999999999998652 24557799999999999999999966 5699999
Q ss_pred eEEEecc
Q 024697 102 ANCNLAS 108 (264)
Q Consensus 102 l~V~~a~ 108 (264)
+++.|++
T Consensus 249 ~K~gWgk 255 (877)
T KOG0151|consen 249 MKLGWGK 255 (877)
T ss_pred eeecccc
Confidence 9999983
No 88
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.38 E-value=4e-07 Score=87.06 Aligned_cols=88 Identities=23% Similarity=0.437 Sum_probs=79.9
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCC-cCCceeE
Q 024697 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRAN 103 (264)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~-i~Gr~l~ 103 (264)
+......+++||++|+..+++++++++++.||.+....++.|..+|.+|||+|.+|.+......||+.+|.+ +.++.|.
T Consensus 283 t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lv 362 (500)
T KOG0120|consen 283 TDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLV 362 (500)
T ss_pred cCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeE
Confidence 445567789999999999999999999999999999999999999999999999999999999999998765 8899999
Q ss_pred EEeccCCCC
Q 024697 104 CNLASLGRP 112 (264)
Q Consensus 104 V~~a~~~~~ 112 (264)
|..|.....
T Consensus 363 vq~A~~g~~ 371 (500)
T KOG0120|consen 363 VQRAIVGAS 371 (500)
T ss_pred eehhhccch
Confidence 998876543
No 89
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.34 E-value=1.3e-06 Score=79.41 Aligned_cols=86 Identities=26% Similarity=0.277 Sum_probs=76.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEE--------EEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CC
Q 024697 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE--------AVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PF 96 (264)
Q Consensus 26 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~--------v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~ 96 (264)
......-+|||-+|+..+++++|.++|.+++.|.. ++|-+|++|++.||-|.|+|+|...|+.||+..+ +.
T Consensus 61 ~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkd 140 (351)
T KOG1995|consen 61 ADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKD 140 (351)
T ss_pred ccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccc
Confidence 34667889999999999999999999999999853 5678899999999999999999999999999954 77
Q ss_pred cCCceeEEEeccCCC
Q 024697 97 IDGRRANCNLASLGR 111 (264)
Q Consensus 97 i~Gr~l~V~~a~~~~ 111 (264)
+.+..|+|.+|....
T Consensus 141 f~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 141 FCGNTIKVSLAERRT 155 (351)
T ss_pred ccCCCchhhhhhhcc
Confidence 999999999986544
No 90
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.29 E-value=5.2e-06 Score=63.08 Aligned_cols=77 Identities=19% Similarity=0.220 Sum_probs=64.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhc--CCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhC-CCCCc----CCceeEE
Q 024697 32 TKVFVGGLAWETQSETMRRYFEQ--FGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD-PTPFI----DGRRANC 104 (264)
Q Consensus 32 ~~lfVgnLp~~vte~~L~~~F~~--fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~-~~~~i----~Gr~l~V 104 (264)
++|-|.|||...|.++|.+++.. .|+...+-+..|..++.+.|||||-|.+.++|.+-.+. ++..+ ..|.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999999865 46778888999988899999999999999999998887 44332 3566788
Q ss_pred Eecc
Q 024697 105 NLAS 108 (264)
Q Consensus 105 ~~a~ 108 (264)
.+|+
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 8875
No 91
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.17 E-value=4.6e-06 Score=78.65 Aligned_cols=80 Identities=23% Similarity=0.297 Sum_probs=66.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEE-EEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEEec
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILE-AVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLA 107 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~-v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~a 107 (264)
.....|-+.+||+.|||+||.+||+..-.+.. +.++.|. .+++.|-|||+|++.|.|++||..+...|+-|-|+|-.+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 45678889999999999999999997654444 4455565 488999999999999999999999888899999988776
Q ss_pred cC
Q 024697 108 SL 109 (264)
Q Consensus 108 ~~ 109 (264)
..
T Consensus 180 s~ 181 (510)
T KOG4211|consen 180 SR 181 (510)
T ss_pred HH
Confidence 53
No 92
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.09 E-value=4.2e-06 Score=75.61 Aligned_cols=79 Identities=28% Similarity=0.444 Sum_probs=70.6
Q ss_pred CcEEE-EcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEEeccC
Q 024697 31 YTKVF-VGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLASL 109 (264)
Q Consensus 31 ~~~lf-VgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~a~~ 109 (264)
..++| |++|+.++++++|+..|..+|.|..+++..++.++.++||++|+|.+.+.+.+++......|.++.+.+.....
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDEP 263 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCCC
Confidence 34455 99999999999999999999999999999999999999999999999999999998744669999999887743
No 93
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.00 E-value=2.2e-05 Score=57.74 Aligned_cols=68 Identities=19% Similarity=0.324 Sum_probs=46.6
Q ss_pred cEEEEcCCCCCCCHHH----HHHHhhcCC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCC-cCCceeEEE
Q 024697 32 TKVFVGGLAWETQSET----MRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRANCN 105 (264)
Q Consensus 32 ~~lfVgnLp~~vte~~----L~~~F~~fG-~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~-i~Gr~l~V~ 105 (264)
..|+|.|||.+.+... |+.++..+| +|.+| +.+.|+|.|.+.|.|++|.+.++.+ +.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4699999999998775 556666775 56655 1368999999999999999997655 999999999
Q ss_pred eccC
Q 024697 106 LASL 109 (264)
Q Consensus 106 ~a~~ 109 (264)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 8743
No 94
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.98 E-value=7.7e-06 Score=70.61 Aligned_cols=78 Identities=23% Similarity=0.323 Sum_probs=65.5
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeE
Q 024697 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (264)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~ 103 (264)
.....+.+.|+|-+|..++.+.+|++.|+.+|.++...+ ..+++||+|++.++|++||+.++ ..+.++.|.
T Consensus 93 ~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~ 164 (216)
T KOG0106|consen 93 RPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRIS 164 (216)
T ss_pred CCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceee
Confidence 344677899999999999999999999999999965544 25599999999999999999965 669999999
Q ss_pred EEeccCC
Q 024697 104 CNLASLG 110 (264)
Q Consensus 104 V~~a~~~ 110 (264)
|......
T Consensus 165 ~~~~~~d 171 (216)
T KOG0106|consen 165 VEKNSRD 171 (216)
T ss_pred ecccCcc
Confidence 9655433
No 95
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.95 E-value=1.2e-05 Score=62.02 Aligned_cols=70 Identities=27% Similarity=0.407 Sum_probs=44.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC------CCCcCCceeEEE
Q 024697 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP------TPFIDGRRANCN 105 (264)
Q Consensus 32 ~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~------~~~i~Gr~l~V~ 105 (264)
+.|.|.++...++.++|+++|+.||.|..|++.+... .|+|.|.+.++|++|++.. ...|.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 4688999999999999999999999999999877643 8999999999999999752 123777777666
Q ss_pred ec
Q 024697 106 LA 107 (264)
Q Consensus 106 ~a 107 (264)
+-
T Consensus 76 vL 77 (105)
T PF08777_consen 76 VL 77 (105)
T ss_dssp --
T ss_pred EC
Confidence 53
No 96
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.85 E-value=1.1e-05 Score=69.30 Aligned_cols=63 Identities=13% Similarity=0.216 Sum_probs=51.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~ 94 (264)
.....+|||.||..+++||+|+.+|+.|-....++|... ..-..+||+|++.+.|+.|+..+.
T Consensus 207 ~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~----~g~~vaf~~~~~~~~at~am~~lq 269 (284)
T KOG1457|consen 207 ARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR----GGMPVAFADFEEIEQATDAMNHLQ 269 (284)
T ss_pred chhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC----CCcceEeecHHHHHHHHHHHHHhh
Confidence 445669999999999999999999999987777766322 224589999999999999998754
No 97
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.84 E-value=0.00017 Score=66.93 Aligned_cols=76 Identities=13% Similarity=0.256 Sum_probs=66.9
Q ss_pred CcEEEEcCCCC-CCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 024697 31 YTKVFVGGLAW-ETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (264)
Q Consensus 31 ~~~lfVgnLp~-~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a~ 108 (264)
++.|.|.||.. .||.+.|..+|..||+|.+|+|+.++ |--|.|.+.|...|+-|++.++ +.|.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 67899999976 58999999999999999999999886 3579999999999999999966 56999999999986
Q ss_pred CCC
Q 024697 109 LGR 111 (264)
Q Consensus 109 ~~~ 111 (264)
-..
T Consensus 372 H~~ 374 (492)
T KOG1190|consen 372 HTN 374 (492)
T ss_pred Ccc
Confidence 443
No 98
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.77 E-value=7.1e-05 Score=50.53 Aligned_cols=52 Identities=23% Similarity=0.411 Sum_probs=41.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHH
Q 024697 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC 90 (264)
Q Consensus 32 ~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai 90 (264)
+.|-|.+.+.+.. +++.+.|..||+|+++.+..+ +-+.+|+|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 5678888887765 445558889999999888522 449999999999999986
No 99
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.73 E-value=4.3e-05 Score=70.80 Aligned_cols=74 Identities=19% Similarity=0.341 Sum_probs=62.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-C--CCcCCceeEEE
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-T--PFIDGRRANCN 105 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~--~~i~Gr~l~V~ 105 (264)
..++.|.++||||+++|+||.+++..||+|+.+.+++.++ -||++|.|.++|..-+..- . ..+.|+.|.|.
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 3678999999999999999999999999999999877643 8999999999988755442 2 34889999988
Q ss_pred ecc
Q 024697 106 LAS 108 (264)
Q Consensus 106 ~a~ 108 (264)
++.
T Consensus 100 ~sn 102 (492)
T KOG1190|consen 100 YSN 102 (492)
T ss_pred hhh
Confidence 764
No 100
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=0.00012 Score=69.76 Aligned_cols=65 Identities=26% Similarity=0.484 Sum_probs=49.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEee-cCCC--CCccc---eEEEEeCCHHHHHHHHhC
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVIT-DKNT--GRSKG---YGFVTFREPEAARRACAD 92 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~-d~~t--g~skG---~gFV~F~~~e~A~~Ai~~ 92 (264)
...-.++||||+||++++|++|...|..||.+.. +... .... --.|| |+|+.|+++.++.+.|.+
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 3456789999999999999999999999998653 2221 1111 22467 999999999888877765
No 101
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.63 E-value=0.00022 Score=70.01 Aligned_cols=80 Identities=19% Similarity=0.297 Sum_probs=65.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEE
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~ 105 (264)
...-.+.|-|.|+|++++-+||-+||..|-.+-.-.+++-.+.|+..|-|.|.|++.|+|.+|...++ +.|..+.|++.
T Consensus 863 ~~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~ 942 (944)
T KOG4307|consen 863 KSPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLR 942 (944)
T ss_pred CCCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEE
Confidence 34445688899999999999999999999766544344433469999999999999999999999966 55999998886
Q ss_pred e
Q 024697 106 L 106 (264)
Q Consensus 106 ~ 106 (264)
+
T Consensus 943 i 943 (944)
T KOG4307|consen 943 I 943 (944)
T ss_pred e
Confidence 5
No 102
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.60 E-value=9.1e-05 Score=69.03 Aligned_cols=71 Identities=21% Similarity=0.267 Sum_probs=59.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeec---CCCCC----------ccceEEEEeCCHHHHHHHHhC
Q 024697 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITD---KNTGR----------SKGYGFVTFREPEAARRACAD 92 (264)
Q Consensus 26 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d---~~tg~----------skG~gFV~F~~~e~A~~Ai~~ 92 (264)
+++...++|.+-|||.+-.-+.|.++|+.+|.|+.|+|... ..+.+ .+-+|||+|++.+.|.||.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 33458899999999999999999999999999999998775 22211 267899999999999999999
Q ss_pred CCCC
Q 024697 93 PTPF 96 (264)
Q Consensus 93 ~~~~ 96 (264)
++.+
T Consensus 306 ~~~e 309 (484)
T KOG1855|consen 306 LNPE 309 (484)
T ss_pred hchh
Confidence 7644
No 103
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.57 E-value=0.00014 Score=65.94 Aligned_cols=81 Identities=23% Similarity=0.401 Sum_probs=61.6
Q ss_pred CCcEEEEcCCCCCCCHHH----H--HHHhhcCCCEEEEEEeecCCCC-CccceE--EEEeCCHHHHHHHHhCC-CCCcCC
Q 024697 30 TYTKVFVGGLAWETQSET----M--RRYFEQFGEILEAVVITDKNTG-RSKGYG--FVTFREPEAARRACADP-TPFIDG 99 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte~~----L--~~~F~~fG~I~~v~v~~d~~tg-~skG~g--FV~F~~~e~A~~Ai~~~-~~~i~G 99 (264)
.-.-+||-+|+..+.+++ | .++|.+||.|..+.|-+....- ...+.+ +|+|.+.|+|.+||.+. +..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 445789999999887776 3 5899999999998875543111 112223 99999999999999995 466999
Q ss_pred ceeEEEeccCC
Q 024697 100 RRANCNLASLG 110 (264)
Q Consensus 100 r~l~V~~a~~~ 110 (264)
|.|++.+.+.+
T Consensus 193 r~lkatYGTTK 203 (480)
T COG5175 193 RVLKATYGTTK 203 (480)
T ss_pred ceEeeecCchH
Confidence 99999887554
No 104
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.56 E-value=0.00033 Score=53.54 Aligned_cols=78 Identities=24% Similarity=0.308 Sum_probs=52.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEE-EeecC------CCCCccceEEEEeCCHHHHHHHHhCCCCCcCCce
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAV-VITDK------NTGRSKGYGFVTFREPEAARRACADPTPFIDGRR 101 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~-v~~d~------~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~ 101 (264)
...+.|.|-+.|.. ....|.+.|++||+|++.. +.++. ..-.....-.|+|+++.+|++||.+++..|+|.-
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~ 82 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSL 82 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCE
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcE
Confidence 34567888899988 5567778899999998875 11110 0012245889999999999999999998888854
Q ss_pred -eEEEec
Q 024697 102 -ANCNLA 107 (264)
Q Consensus 102 -l~V~~a 107 (264)
+-|.+.
T Consensus 83 mvGV~~~ 89 (100)
T PF05172_consen 83 MVGVKPC 89 (100)
T ss_dssp EEEEEE-
T ss_pred EEEEEEc
Confidence 456665
No 105
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=0.00024 Score=67.61 Aligned_cols=64 Identities=33% Similarity=0.416 Sum_probs=59.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhh-cCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhC
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFE-QFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~-~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~ 92 (264)
...++||||+|+.-++.++|..+|+ -||.|+-+-|-+|.+-+-.||-|=|+|.+..+-.+||+.
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 4568999999999999999999998 799999999999977788999999999999999999986
No 106
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.36 E-value=0.00069 Score=58.41 Aligned_cols=75 Identities=24% Similarity=0.305 Sum_probs=61.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCC-CcC-CceeEEE
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTP-FID-GRRANCN 105 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~-~i~-Gr~l~V~ 105 (264)
......||+.|||.+++.+.|..+|++|...++++++..+ ++.|||+|.+...|..|...+.. .|- ...+.|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 3456789999999999999999999999999999988764 67999999999888888877542 233 5666666
Q ss_pred ec
Q 024697 106 LA 107 (264)
Q Consensus 106 ~a 107 (264)
.+
T Consensus 218 ~a 219 (221)
T KOG4206|consen 218 FA 219 (221)
T ss_pred cc
Confidence 55
No 107
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.29 E-value=0.0031 Score=58.22 Aligned_cols=81 Identities=20% Similarity=0.256 Sum_probs=69.2
Q ss_pred CCCCCCCCcEEEEcCCCCC-CCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCce
Q 024697 24 SPFGDTTYTKVFVGGLAWE-TQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRR 101 (264)
Q Consensus 24 ~~~~~~~~~~lfVgnLp~~-vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~ 101 (264)
++-...+.+.+.|-+|+.. +.-+.|-.+|..||.|++|++++.+ .|-|.|+..|..+.++||..++ ..+-|.+
T Consensus 280 ~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~k 354 (494)
T KOG1456|consen 280 SPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGK 354 (494)
T ss_pred CCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccce
Confidence 3455677889999999865 6778899999999999999999886 4789999999999999999965 4588999
Q ss_pred eEEEeccC
Q 024697 102 ANCNLASL 109 (264)
Q Consensus 102 l~V~~a~~ 109 (264)
|.|..+..
T Consensus 355 l~v~~SkQ 362 (494)
T KOG1456|consen 355 LNVCVSKQ 362 (494)
T ss_pred EEEeeccc
Confidence 99988743
No 108
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.06 E-value=0.00037 Score=69.81 Aligned_cols=78 Identities=15% Similarity=0.250 Sum_probs=69.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCC-cCCceeEEEeccC
Q 024697 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRANCNLASL 109 (264)
Q Consensus 31 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~-i~Gr~l~V~~a~~ 109 (264)
..+|||.|+++..|+++|+.+++++|.++++.+++.+ .|+.||.+||.|.+..++.+++...... +.-+.+.|....+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 4689999999999999999999999999999998887 4999999999999999999999886644 6667777777654
No 109
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.92 E-value=0.0011 Score=61.30 Aligned_cols=74 Identities=23% Similarity=0.283 Sum_probs=57.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhc---C-CCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEE
Q 024697 31 YTKVFVGGLAWETQSETMRRYFEQ---F-GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCN 105 (264)
Q Consensus 31 ~~~lfVgnLp~~vte~~L~~~F~~---f-G~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~ 105 (264)
.-.|-+.+||+++++.++.+||.. . |..+.|-+++.. +|+..|-|||.|..+++|+.||.++...|+-|-|++-
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElF 238 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELF 238 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 345666799999999999999952 2 344556555554 4999999999999999999999887666666665554
No 110
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.91 E-value=0.0038 Score=57.63 Aligned_cols=86 Identities=20% Similarity=0.247 Sum_probs=70.2
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhC--CCC-CcC
Q 024697 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD--PTP-FID 98 (264)
Q Consensus 22 ~~~~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~--~~~-~i~ 98 (264)
..++.....+-.|.|.+|-..++|.+|-+.++.||.|.-+.++-.+ --+.|+|+|.+.|+.++.. .+. .|.
T Consensus 22 ~~dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i~ 95 (494)
T KOG1456|consen 22 NADPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYIA 95 (494)
T ss_pred CCCCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCccccc
Confidence 4455555667799999999999999999999999999998876653 3899999999999999965 343 499
Q ss_pred CceeEEEeccCCCCC
Q 024697 99 GRRANCNLASLGRPR 113 (264)
Q Consensus 99 Gr~l~V~~a~~~~~~ 113 (264)
|+...+++++.++-+
T Consensus 96 gq~Al~NyStsq~i~ 110 (494)
T KOG1456|consen 96 GQQALFNYSTSQCIE 110 (494)
T ss_pred Cchhhcccchhhhhc
Confidence 999988888655443
No 111
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.89 E-value=0.0036 Score=60.44 Aligned_cols=76 Identities=21% Similarity=0.282 Sum_probs=58.1
Q ss_pred CCcEEEEcCCCCCCCH------HHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CC-cCCce
Q 024697 30 TYTKVFVGGLAWETQS------ETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PF-IDGRR 101 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte------~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~-i~Gr~ 101 (264)
-...|+|.|+|.--.. .-|.++|+++|+|..+.+.-+.. |.++||.|++|.+..+|+.||+.++ +. .....
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 3457888888853222 23668899999999999988876 5599999999999999999999955 43 44566
Q ss_pred eEEEe
Q 024697 102 ANCNL 106 (264)
Q Consensus 102 l~V~~ 106 (264)
+.|.+
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 66654
No 112
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.89 E-value=0.016 Score=48.89 Aligned_cols=76 Identities=21% Similarity=0.258 Sum_probs=61.6
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CC--cCCce
Q 024697 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PF--IDGRR 101 (264)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~--i~Gr~ 101 (264)
+.......+|.|.+||.+-++.+|+++..+-|+|+..+|.+| |.+.|+|...|+.+-||.++. .. -.|..
T Consensus 109 ppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~ 181 (241)
T KOG0105|consen 109 PPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGET 181 (241)
T ss_pred CcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccCcCcE
Confidence 333445568999999999999999999999999999999887 389999999999999998854 22 45666
Q ss_pred eEEEec
Q 024697 102 ANCNLA 107 (264)
Q Consensus 102 l~V~~a 107 (264)
..+..-
T Consensus 182 ~yirv~ 187 (241)
T KOG0105|consen 182 AYIRVR 187 (241)
T ss_pred eeEEec
Confidence 555543
No 113
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.87 E-value=0.0025 Score=51.76 Aligned_cols=56 Identities=25% Similarity=0.360 Sum_probs=45.4
Q ss_pred HHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEEeccCC
Q 024697 47 TMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLASLG 110 (264)
Q Consensus 47 ~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~a~~~ 110 (264)
+|.+.|..||++.=++++.+ .-+|+|.+-++|.+|+...+..|+|+.|+|++..+.
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE----
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCcc
Confidence 57778889999888888766 459999999999999999999999999999998754
No 114
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.71 E-value=0.0013 Score=57.82 Aligned_cols=72 Identities=18% Similarity=0.322 Sum_probs=58.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCC--------CCcc----ceEEEEeCCHHHHHHHHhCCC-CC
Q 024697 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNT--------GRSK----GYGFVTFREPEAARRACADPT-PF 96 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~t--------g~sk----G~gFV~F~~~e~A~~Ai~~~~-~~ 96 (264)
..-.||+++||..++-..||++|+.||+|-+|-|.....+ |.++ --|+|+|.+...|.++.+.+| ..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 5578999999999999999999999999999988766544 2222 246799999999999888855 55
Q ss_pred cCCce
Q 024697 97 IDGRR 101 (264)
Q Consensus 97 i~Gr~ 101 (264)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 88865
No 115
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.71 E-value=0.009 Score=41.58 Aligned_cols=57 Identities=23% Similarity=0.360 Sum_probs=46.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcC---CCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQF---GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP 93 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~f---G~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~ 93 (264)
....+|+|.+++ +.+.++|+.+|..| ....+|..+-|. -|=|.|.+.+.|.+||..+
T Consensus 3 ~rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 3 IRPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 356789999986 57889999999988 234678888875 5789999999999999753
No 116
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.71 E-value=0.00019 Score=71.86 Aligned_cols=71 Identities=28% Similarity=0.378 Sum_probs=62.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCC
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDG 99 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~G 99 (264)
.+.+++||.||+..+.+++|...|..+|.|..+.|.-.+++++.||.|+|+|.+.+++.+||+...+.+.|
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 34568999999999999999999999999998887766667999999999999999999999987755444
No 117
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.56 E-value=0.00048 Score=69.41 Aligned_cols=83 Identities=18% Similarity=0.270 Sum_probs=65.5
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCcee
Q 024697 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRA 102 (264)
Q Consensus 24 ~~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l 102 (264)
.-++...+++||+|||+..+++.+|+..|..+|.|.+|+|-+.+. +.---|+||.|.+.+.+-+|+.++. ..|..-.+
T Consensus 365 ~~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~ 443 (975)
T KOG0112|consen 365 KLDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTH 443 (975)
T ss_pred cccchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCcc
Confidence 345566788999999999999999999999999999999877653 4445699999999999999998754 44444344
Q ss_pred EEEec
Q 024697 103 NCNLA 107 (264)
Q Consensus 103 ~V~~a 107 (264)
++.+.
T Consensus 444 r~glG 448 (975)
T KOG0112|consen 444 RIGLG 448 (975)
T ss_pred ccccc
Confidence 44444
No 118
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.41 E-value=0.0033 Score=58.18 Aligned_cols=78 Identities=23% Similarity=0.362 Sum_probs=63.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCC-EEE--EEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEec
Q 024697 32 TKVFVGGLAWETQSETMRRYFEQFGE-ILE--AVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (264)
Q Consensus 32 ~~lfVgnLp~~vte~~L~~~F~~fG~-I~~--v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a 107 (264)
.-|-+.+||.+.+.++|-+||..|-. |.. |.++.+. .|+..|-|||+|.+.|+|..|..+.+ +..+.|-|+|-.+
T Consensus 281 dcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 281 DCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred CeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 35668899999999999999999874 333 6666665 49999999999999999999998855 4466888888877
Q ss_pred cCC
Q 024697 108 SLG 110 (264)
Q Consensus 108 ~~~ 110 (264)
...
T Consensus 360 S~e 362 (508)
T KOG1365|consen 360 SVE 362 (508)
T ss_pred cHH
Confidence 544
No 119
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.38 E-value=0.0092 Score=57.63 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=48.4
Q ss_pred HHHHhhcCCCEEEEEEeecCCC---CCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 024697 48 MRRYFEQFGEILEAVVITDKNT---GRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (264)
Q Consensus 48 L~~~F~~fG~I~~v~v~~d~~t---g~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a~ 108 (264)
++.-+.+||.|..|.|.++-.+ .-..|-.||+|.+.+++++|.++++ ..+.+|.+.+.+-.
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 4444568999999999887222 3346778999999999999999976 55999999888764
No 120
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.38 E-value=0.002 Score=60.33 Aligned_cols=76 Identities=17% Similarity=0.301 Sum_probs=57.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-C-CcCCceeEEEeccC
Q 024697 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-P-FIDGRRANCNLASL 109 (264)
Q Consensus 32 ~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~-~i~Gr~l~V~~a~~ 109 (264)
.+||++||...++.++|+.+|..--.-..-.++. ..||+||.+.+...|.+||+.++ + ++.|+++.|...-.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4799999999999999999997531111111111 24799999999999999999966 3 49999999998765
Q ss_pred CCCC
Q 024697 110 GRPR 113 (264)
Q Consensus 110 ~~~~ 113 (264)
++.+
T Consensus 76 kkqr 79 (584)
T KOG2193|consen 76 KKQR 79 (584)
T ss_pred HHHH
Confidence 5433
No 121
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.23 E-value=0.0037 Score=60.74 Aligned_cols=82 Identities=13% Similarity=0.148 Sum_probs=65.4
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhh-cCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCC----cC
Q 024697 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFE-QFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF----ID 98 (264)
Q Consensus 24 ~~~~~~~~~~lfVgnLp~~vte~~L~~~F~-~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~----i~ 98 (264)
+|......+.|+|.||-.-+|.-+|++++. ..|.|++.+| |+ -|-.|||.|.+.++|-..+..++.+ -+
T Consensus 437 SPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk----IKShCyV~yss~eEA~atr~AlhnV~WP~sN 510 (718)
T KOG2416|consen 437 SPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK----IKSHCYVSYSSVEEAAATREALHNVQWPPSN 510 (718)
T ss_pred CCCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH----hhcceeEecccHHHHHHHHHHHhccccCCCC
Confidence 445567788999999999999999999998 5677777633 33 3679999999999999999886532 56
Q ss_pred CceeEEEeccCCC
Q 024697 99 GRRANCNLASLGR 111 (264)
Q Consensus 99 Gr~l~V~~a~~~~ 111 (264)
.+.|.+.++....
T Consensus 511 PK~L~adf~~~de 523 (718)
T KOG2416|consen 511 PKHLIADFVRADE 523 (718)
T ss_pred CceeEeeecchhH
Confidence 7899999886443
No 122
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.10 E-value=0.016 Score=53.01 Aligned_cols=79 Identities=23% Similarity=0.367 Sum_probs=59.6
Q ss_pred CCCCCCcEEEEcCCC----CCCC-------HHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC
Q 024697 26 FGDTTYTKVFVGGLA----WETQ-------SETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (264)
Q Consensus 26 ~~~~~~~~lfVgnLp----~~vt-------e~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~ 94 (264)
......++|.|.||= .+.+ +++|++-.++||.|.+|.|- | ....|.+-|.|.+.++|..||+.|+
T Consensus 260 sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~-d---~hPdGvvtV~f~n~eeA~~ciq~m~ 335 (382)
T KOG1548|consen 260 SKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY-D---RHPDGVVTVSFRNNEEADQCIQTMD 335 (382)
T ss_pred ccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe-c---cCCCceeEEEeCChHHHHHHHHHhc
Confidence 334567788888872 2233 34566667899999998764 3 2357899999999999999999977
Q ss_pred -CCcCCceeEEEecc
Q 024697 95 -PFIDGRRANCNLAS 108 (264)
Q Consensus 95 -~~i~Gr~l~V~~a~ 108 (264)
..++||.|.-++-.
T Consensus 336 GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 336 GRWFDGRQLTASIWD 350 (382)
T ss_pred CeeecceEEEEEEeC
Confidence 55999999877653
No 123
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.07 E-value=0.0094 Score=58.97 Aligned_cols=83 Identities=19% Similarity=0.119 Sum_probs=67.9
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEE-EEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCC-cCCce
Q 024697 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE-AVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRR 101 (264)
Q Consensus 24 ~~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~-v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~-i~Gr~ 101 (264)
.++.......|||..||..+++.++.++|..--.|++ |.|.+.. +++.++-|||+|..++++.+|+....+. ++-+.
T Consensus 427 vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~ 505 (944)
T KOG4307|consen 427 VPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRI 505 (944)
T ss_pred CCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceE
Confidence 4566677789999999999999999999998878887 5555544 6888999999999999999888775544 77788
Q ss_pred eEEEec
Q 024697 102 ANCNLA 107 (264)
Q Consensus 102 l~V~~a 107 (264)
|+|.-.
T Consensus 506 irv~si 511 (944)
T KOG4307|consen 506 IRVDSI 511 (944)
T ss_pred EEeech
Confidence 888644
No 124
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.00 E-value=0.0056 Score=53.87 Aligned_cols=74 Identities=24% Similarity=0.379 Sum_probs=60.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-----CCcCCceeEEEe
Q 024697 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-----PFIDGRRANCNL 106 (264)
Q Consensus 32 ~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-----~~i~Gr~l~V~~ 106 (264)
..|+|.||..-++.|.|++-|+.||.|+...++.|. .++..+-++|+|...-.|.+|+.... .++.++..-|..
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 789999999999999999999999999988777775 48888999999999999999887742 234455544443
No 125
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.75 E-value=0.037 Score=44.85 Aligned_cols=74 Identities=18% Similarity=0.271 Sum_probs=56.4
Q ss_pred CCCCcEEEEcCCCCCCC----HHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeE
Q 024697 28 DTTYTKVFVGGLAWETQ----SETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRAN 103 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vt----e~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~ 103 (264)
+..-.+|.|.=|..++. -..+...++.||.|.+|.+. | +--|.|.|+|..+|-+|+.+.....-|..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----G--rqsavVvF~d~~SAC~Av~Af~s~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----G--RQSAVVVFKDITSACKAVSAFQSRAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----C--CceEEEEehhhHHHHHHHHhhcCCCCCceEE
Confidence 45566777876655542 23455556789999998662 3 3479999999999999999987788899999
Q ss_pred EEecc
Q 024697 104 CNLAS 108 (264)
Q Consensus 104 V~~a~ 108 (264)
|+|-.
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 99864
No 126
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.65 E-value=0.0051 Score=54.11 Aligned_cols=54 Identities=30% Similarity=0.430 Sum_probs=44.6
Q ss_pred cCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 024697 54 QFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (264)
Q Consensus 54 ~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a~ 108 (264)
+||+|++++|-.+. .-.-+|=++|.|...|+|++|++.+| ..+.|++|.+.+..
T Consensus 92 kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 92 KYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred Hhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 89999999775543 24457889999999999999999955 67999999988774
No 127
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.60 E-value=0.015 Score=58.94 Aligned_cols=78 Identities=28% Similarity=0.397 Sum_probs=65.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCC-cCC--ceeE
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDG--RRAN 103 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~-i~G--r~l~ 103 (264)
.-...+.|||++|..++....|...|..||.|..+.+-. ..-|++|.+++.+.++.|++.+... |++ ++|+
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 345678999999999999999999999999999987732 2459999999999999999996544 554 7799
Q ss_pred EEeccCC
Q 024697 104 CNLASLG 110 (264)
Q Consensus 104 V~~a~~~ 110 (264)
|.+|...
T Consensus 525 vdla~~~ 531 (975)
T KOG0112|consen 525 VDLASPP 531 (975)
T ss_pred cccccCC
Confidence 9998644
No 128
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=95.53 E-value=0.021 Score=53.18 Aligned_cols=77 Identities=13% Similarity=0.129 Sum_probs=60.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCC---CCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEEec
Q 024697 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKN---TGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLA 107 (264)
Q Consensus 31 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~---tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~a 107 (264)
...|-|.||..+++.++++.+|.-.|+|.+++|.-+.. -....-.|||.|.|...+..|-..-|.++-++.|.|...
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPY 86 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEec
Confidence 34899999999999999999999999999999865322 123455899999999999988888666555555555443
No 129
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.36 E-value=0.044 Score=49.31 Aligned_cols=63 Identities=17% Similarity=0.304 Sum_probs=48.3
Q ss_pred HHHHHHHhhcCCCEEEEEEeecCCCCCcc-ceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEec
Q 024697 45 SETMRRYFEQFGEILEAVVITDKNTGRSK-GYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (264)
Q Consensus 45 e~~L~~~F~~fG~I~~v~v~~d~~tg~sk-G~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a 107 (264)
|+++++-.++||+|..|.|..+...-... ---||+|+..++|.+|+..+| ..++||.++.-+-
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 35678888999999999887775433333 246999999999999999976 5599988765443
No 130
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.34 E-value=0.07 Score=48.15 Aligned_cols=71 Identities=18% Similarity=0.233 Sum_probs=53.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCcee-EEEecc
Q 024697 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRA-NCNLAS 108 (264)
Q Consensus 31 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l-~V~~a~ 108 (264)
...|-|-+.+..- -..|-.+|++||+|++...- ..-.+-+|.|.++.+|+|||.+++.+|+|..+ -|+...
T Consensus 197 D~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPCT 268 (350)
T ss_pred cceEEEeccCccc-hhHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhhcCeeeccceEEeeeecC
Confidence 5677777787764 35566789999999887543 22348899999999999999999998888654 444433
No 131
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=95.05 E-value=0.019 Score=52.02 Aligned_cols=83 Identities=18% Similarity=0.178 Sum_probs=71.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEec
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a 107 (264)
...+++||+++.+++.+.++..++...|.+..+.+........+++++.|.|...+.+..|++... ..+.++.+...+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 457899999999999999999999999999888888877789999999999999999999999866 4677777776666
Q ss_pred cCCC
Q 024697 108 SLGR 111 (264)
Q Consensus 108 ~~~~ 111 (264)
....
T Consensus 166 ~~~~ 169 (285)
T KOG4210|consen 166 TRRG 169 (285)
T ss_pred cccc
Confidence 5433
No 132
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=94.82 E-value=0.037 Score=53.61 Aligned_cols=73 Identities=12% Similarity=0.194 Sum_probs=58.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhc--CCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC---CCcCCcee
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQ--FGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT---PFIDGRRA 102 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~--fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~---~~i~Gr~l 102 (264)
..+.|.|.+..|+..+-+|+++.||+. +-++.+|.+-.+. -=||+|++.+||++|-+.+. ++|-||.|
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 345678889999999999999999964 7788888876553 23899999999999987644 56889988
Q ss_pred EEEec
Q 024697 103 NCNLA 107 (264)
Q Consensus 103 ~V~~a 107 (264)
..++.
T Consensus 245 mARIK 249 (684)
T KOG2591|consen 245 MARIK 249 (684)
T ss_pred hhhhh
Confidence 65543
No 133
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.80 E-value=0.1 Score=38.44 Aligned_cols=54 Identities=19% Similarity=0.290 Sum_probs=39.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC
Q 024697 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP 93 (264)
Q Consensus 31 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~ 93 (264)
.+..+|. .|.++...||.++|+.||.|.-- .+.|. -|||...+.|.|..|+...
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~Vs-Wi~dT-------SAfV~l~~r~~~~~v~~~~ 62 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVS-WINDT-------SAFVALHNRDQAKVVMNTL 62 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEE-EECTT-------EEEEEECCCHHHHHHHHHH
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEE-EEcCC-------cEEEEeecHHHHHHHHHHh
Confidence 3455565 99999999999999999998644 44442 7999999999999888764
No 134
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.63 E-value=0.015 Score=53.07 Aligned_cols=82 Identities=27% Similarity=0.414 Sum_probs=59.9
Q ss_pred CCCcEEEEcCCCCCCCHHH-HH--HHhhcCCCEEEEEEeecCC--CCC-ccceEEEEeCCHHHHHHHHhCCCC-CcCCce
Q 024697 29 TTYTKVFVGGLAWETQSET-MR--RYFEQFGEILEAVVITDKN--TGR-SKGYGFVTFREPEAARRACADPTP-FIDGRR 101 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~-L~--~~F~~fG~I~~v~v~~d~~--tg~-skG~gFV~F~~~e~A~~Ai~~~~~-~i~Gr~ 101 (264)
...+.+||-+|+..+.+++ |+ +.|.+||.|..+.+-++.. .+. .-.-++|+|+..|+|..||...+. .++|+.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 4456788889998765554 43 6788999999998877652 111 122479999999999999999654 488888
Q ss_pred eEEEeccCC
Q 024697 102 ANCNLASLG 110 (264)
Q Consensus 102 l~V~~a~~~ 110 (264)
|+..+...+
T Consensus 155 lka~~gttk 163 (327)
T KOG2068|consen 155 LKASLGTTK 163 (327)
T ss_pred hHHhhCCCc
Confidence 777776554
No 135
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.37 E-value=0.024 Score=53.92 Aligned_cols=74 Identities=19% Similarity=0.154 Sum_probs=57.4
Q ss_pred CCcEEEEcCCCCCC-CHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEEecc
Q 024697 30 TYTKVFVGGLAWET-QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLAS 108 (264)
Q Consensus 30 ~~~~lfVgnLp~~v-te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~a~ 108 (264)
+.+.|-+.-++... |-++|...|.+||+|..|.|-... -.|.|+|.+..+|-+|-......|+++.|+|.|-.
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHN 444 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhccccceecCceeEEEEec
Confidence 33444444444443 567899999999999999885543 37899999999998888777778999999999986
Q ss_pred C
Q 024697 109 L 109 (264)
Q Consensus 109 ~ 109 (264)
.
T Consensus 445 p 445 (526)
T KOG2135|consen 445 P 445 (526)
T ss_pred C
Confidence 5
No 136
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=94.35 E-value=0.043 Score=54.11 Aligned_cols=71 Identities=21% Similarity=0.241 Sum_probs=60.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCC-cCCceeEEEe
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRANCNL 106 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~-i~Gr~l~V~~ 106 (264)
....-+|||+||...+.++-++.+...+|-|.+++.+. |||.+|.+.....+|+..+... ++++.|.++.
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 34566999999999999999999999999999886533 9999999999999999987744 8888887765
Q ss_pred c
Q 024697 107 A 107 (264)
Q Consensus 107 a 107 (264)
.
T Consensus 108 d 108 (668)
T KOG2253|consen 108 D 108 (668)
T ss_pred h
Confidence 3
No 137
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.49 E-value=0.27 Score=35.14 Aligned_cols=66 Identities=17% Similarity=0.248 Sum_probs=37.8
Q ss_pred EEEEc-CCCCCCCHHHHHHHhhcCC-----CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEE
Q 024697 33 KVFVG-GLAWETQSETMRRYFEQFG-----EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (264)
Q Consensus 33 ~lfVg-nLp~~vte~~L~~~F~~fG-----~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~ 105 (264)
+|||. +--+.++..+|..++..-+ .|-+++|..+ |+||+-.. +.|+++++.++ ..+.|++|+|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 45553 3345688899999887764 4556776544 88998875 47788888854 56999999998
Q ss_pred ec
Q 024697 106 LA 107 (264)
Q Consensus 106 ~a 107 (264)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 75
No 138
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=92.66 E-value=0.37 Score=40.87 Aligned_cols=60 Identities=17% Similarity=0.203 Sum_probs=43.6
Q ss_pred CHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC--CC-cCCceeEEEeccC
Q 024697 44 QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT--PF-IDGRRANCNLASL 109 (264)
Q Consensus 44 te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~--~~-i~Gr~l~V~~a~~ 109 (264)
..+.|+++|..++.+.+..+++.- +-..|.|.+.++|.+|...++ .. +.|+.|+|-++..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 457899999999999988877663 367899999999999999966 44 9999999988843
No 139
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=92.48 E-value=1.3 Score=34.33 Aligned_cols=64 Identities=17% Similarity=0.165 Sum_probs=47.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcC-CCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhC-CCCC
Q 024697 31 YTKVFVGGLAWETQSETMRRYFEQF-GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD-PTPF 96 (264)
Q Consensus 31 ~~~lfVgnLp~~vte~~L~~~F~~f-G~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~-~~~~ 96 (264)
...+.+...+..++.++|..+.+.+ ..|+.++|++|. ..++=.+.+.|.+.++|++-.++ +++.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~ 78 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKP 78 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCc
Confidence 3344455666677777887666665 467788999984 34677889999999999999988 4443
No 140
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=91.02 E-value=0.37 Score=46.85 Aligned_cols=54 Identities=20% Similarity=0.194 Sum_probs=38.9
Q ss_pred CCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhC-CCCC---cCC-ceeEEEecc
Q 024697 55 FGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD-PTPF---IDG-RRANCNLAS 108 (264)
Q Consensus 55 fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~-~~~~---i~G-r~l~V~~a~ 108 (264)
.|.-..+.+..|-.+....|||||.|.+.+++.++.++ +++. +++ |.+.+.+|.
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYAr 471 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYAR 471 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhh
Confidence 34445566777777777889999999999999999988 4432 454 445777774
No 141
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.84 E-value=0.79 Score=32.28 Aligned_cols=53 Identities=13% Similarity=0.343 Sum_probs=37.6
Q ss_pred CCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeE
Q 024697 42 ETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (264)
Q Consensus 42 ~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~ 103 (264)
.++-++|+..+.+|.- .+|..|+ .|| ||.|.|.++|+++....+ ..+..-+|.
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 5677899999999854 2344454 234 899999999999998855 335544443
No 142
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=89.10 E-value=0.25 Score=50.28 Aligned_cols=72 Identities=19% Similarity=0.224 Sum_probs=60.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CC--cCCceeEEEecc
Q 024697 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PF--IDGRRANCNLAS 108 (264)
Q Consensus 32 ~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~--i~Gr~l~V~~a~ 108 (264)
.+..+-|..-+.+...|..+|++||+|.+.+.++|.+ .+.|+|.+.+.|..|++.+. ++ +.|-+.+|.+|+
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 3455667777888899999999999999999988865 89999999999999998854 44 678888888885
Q ss_pred C
Q 024697 109 L 109 (264)
Q Consensus 109 ~ 109 (264)
.
T Consensus 373 ~ 373 (1007)
T KOG4574|consen 373 T 373 (1007)
T ss_pred c
Confidence 3
No 143
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=88.56 E-value=0.39 Score=40.43 Aligned_cols=81 Identities=15% Similarity=0.094 Sum_probs=46.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhc-CCCE---EEEEEeec-CCCCC-ccceEEEEeCCHHHHHHHHhCCC-CC-cCC-
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQ-FGEI---LEAVVITD-KNTGR-SKGYGFVTFREPEAARRACADPT-PF-IDG- 99 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~-fG~I---~~v~v~~d-~~tg~-skG~gFV~F~~~e~A~~Ai~~~~-~~-i~G- 99 (264)
....+|.|.+||.+.||+++.+.++. ++.. ..+.-..+ ..... .-.-|+|.|.+.+++...+...+ +. ++.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34569999999999999999997776 6655 33331122 11111 23578999999999888887744 33 333
Q ss_pred ---ceeEEEeccC
Q 024697 100 ---RRANCNLASL 109 (264)
Q Consensus 100 ---r~l~V~~a~~ 109 (264)
.+..|++|.-
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 2346666654
No 144
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.26 E-value=4.4 Score=38.24 Aligned_cols=67 Identities=13% Similarity=0.124 Sum_probs=52.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCC-EEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCcee
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGE-ILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRA 102 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~-I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l 102 (264)
.-.+.|=|-+++.....+||-..|+.|+. -.+|+++.|. .+|-.|.+...|..||...+.++.=|.|
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh~~lKiRpL 456 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKHDWLKIRPL 456 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccCceEEeeeh
Confidence 45678899999999999999999999875 3456666664 8999999999999999875544444443
No 145
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=75.49 E-value=6.1 Score=27.87 Aligned_cols=60 Identities=13% Similarity=0.188 Sum_probs=42.2
Q ss_pred HHHHHHhhcCC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 024697 46 ETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (264)
Q Consensus 46 ~~L~~~F~~fG-~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a~ 108 (264)
++|++-|...| .|.++.-+..+.+.+.--.-||+.+...+..+ ..+ +.|.+.+++|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCC
Confidence 46777777777 78888888887667777788898876544222 233 45889999998764
No 146
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.45 E-value=15 Score=36.41 Aligned_cols=73 Identities=19% Similarity=0.365 Sum_probs=53.7
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHhhcC----CCEEEEEEeecC----------CCC----------------------
Q 024697 28 DTTYTKVFVGGLAWE-TQSETMRRYFEQF----GEILEAVVITDK----------NTG---------------------- 70 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~-vte~~L~~~F~~f----G~I~~v~v~~d~----------~tg---------------------- 70 (264)
....++|-|.||+|+ +...+|--+|..| |.|.+|.|-... .+|
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456789999999996 7888999999876 689999874321 011
Q ss_pred --------------Ccc-ceEEEEeCCHHHHHHHHhCCCCC-cCCc
Q 024697 71 --------------RSK-GYGFVTFREPEAARRACADPTPF-IDGR 100 (264)
Q Consensus 71 --------------~sk-G~gFV~F~~~e~A~~Ai~~~~~~-i~Gr 100 (264)
+-+ =||.|+|.+.+.|.+.-+.+.++ +...
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS 296 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS 296 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc
Confidence 112 27899999999999988886643 5443
No 147
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=72.04 E-value=7 Score=27.74 Aligned_cols=60 Identities=10% Similarity=0.151 Sum_probs=42.3
Q ss_pred HHHHHHhhcCC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 024697 46 ETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (264)
Q Consensus 46 ~~L~~~F~~fG-~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a~ 108 (264)
++|++-|.+.| .++.+..+..++++..-..-||+.....+-.. .++ +.|+++++.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46777888887 78888888888777666788888876533222 122 45889998888653
No 148
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=71.08 E-value=0.91 Score=39.49 Aligned_cols=65 Identities=28% Similarity=0.362 Sum_probs=52.7
Q ss_pred CCCCCCcEEEEcC----CCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHh
Q 024697 26 FGDTTYTKVFVGG----LAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACA 91 (264)
Q Consensus 26 ~~~~~~~~lfVgn----Lp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~ 91 (264)
++++.-.+++.|+ |+..++++.+.+.|+.-+.|+.+++.++.+ ++.+.++||++.-....-.++.
T Consensus 75 ~~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~ 143 (267)
T KOG4454|consen 75 EEDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALD 143 (267)
T ss_pred ccchhhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhh
Confidence 4456667888998 999999999999999999999999999875 8889999998765444444443
No 149
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=70.32 E-value=26 Score=31.84 Aligned_cols=48 Identities=10% Similarity=0.118 Sum_probs=35.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCH
Q 024697 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP 83 (264)
Q Consensus 31 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~ 83 (264)
.+-|+|+||+.++.-.||+..+.+-+.+ -..|.+. -++|-||++|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswk----g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWK----GHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCC-ceeEeee----cCCcceeEecCCc
Confidence 4569999999999999999999887643 2223222 2367899999765
No 150
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=66.42 E-value=9.8 Score=34.53 Aligned_cols=81 Identities=11% Similarity=0.134 Sum_probs=60.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecC-------CCCCccceEEEEeCCHHHHHHH----HhCC---
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDK-------NTGRSKGYGFVTFREPEAARRA----CADP--- 93 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~-------~tg~skG~gFV~F~~~e~A~~A----i~~~--- 93 (264)
+-..|+|.+.||..+++--.+-..|.+||.|++|.++.+. +..+......+.|-+.+.+... ++.+
T Consensus 12 ~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEf 91 (309)
T PF10567_consen 12 EYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEF 91 (309)
T ss_pred cceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHH
Confidence 3457889999999999988899999999999999998875 1123445778889888776443 2222
Q ss_pred CCCcCCceeEEEecc
Q 024697 94 TPFIDGRRANCNLAS 108 (264)
Q Consensus 94 ~~~i~Gr~l~V~~a~ 108 (264)
...+..+.|.|.+..
T Consensus 92 K~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 92 KTKLKSESLTLSFVS 106 (309)
T ss_pred HHhcCCcceeEEEEE
Confidence 234788888877765
No 151
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=64.42 E-value=26 Score=33.75 Aligned_cols=66 Identities=14% Similarity=0.193 Sum_probs=52.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcC-CCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhC-CCCCcC
Q 024697 31 YTKVFVGGLAWETQSETMRRYFEQF-GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD-PTPFID 98 (264)
Q Consensus 31 ~~~lfVgnLp~~vte~~L~~~F~~f-G~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~-~~~~i~ 98 (264)
.+.|+|=-+|..++-.||-.|...| -.|.+++|++|.. -.+=...|.|.+.++|...-++ +++.++
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 7889999999999999999988765 4788999999742 2344678999999999999988 444443
No 152
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=63.63 E-value=0.93 Score=42.49 Aligned_cols=66 Identities=15% Similarity=0.035 Sum_probs=51.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcC
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFID 98 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~ 98 (264)
+-.++|+|++|...+...++-++|..+|+|....+-. +...-+|-|+|........|+..++.++.
T Consensus 149 eirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr~~gre~k 214 (479)
T KOG4676|consen 149 EIRRTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALRSHGRERK 214 (479)
T ss_pred HHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHHhcchhhh
Confidence 3347899999999999999999999999987765532 22345777999998888888888775544
No 153
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=63.56 E-value=13 Score=29.12 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=27.6
Q ss_pred CCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCC-HHHHHHHHh
Q 024697 43 TQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRE-PEAARRACA 91 (264)
Q Consensus 43 vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~-~e~A~~Ai~ 91 (264)
++.++|++.|+.|..++ ++.+.++ .-+.|+++|+|.+ -.-...|++
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 35678999999998764 6666665 3678999999974 444445554
No 154
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=61.12 E-value=12 Score=31.47 Aligned_cols=65 Identities=22% Similarity=0.287 Sum_probs=46.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHH
Q 024697 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRAC 90 (264)
Q Consensus 26 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai 90 (264)
........+++.+++..++++++...|..+|.+....+...........+.++.+.....+...+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (306)
T COG0724 220 LLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESN 284 (306)
T ss_pred ccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhh
Confidence 34567789999999999999999999999999987777666543334444444444444444433
No 155
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=55.14 E-value=26 Score=24.29 Aligned_cols=18 Identities=39% Similarity=0.700 Sum_probs=15.6
Q ss_pred HHHHHHhhcCCCEEEEEE
Q 024697 46 ETMRRYFEQFGEILEAVV 63 (264)
Q Consensus 46 ~~L~~~F~~fG~I~~v~v 63 (264)
++||++|+..|+|.-+-|
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 589999999999987755
No 156
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=52.56 E-value=13 Score=31.39 Aligned_cols=75 Identities=19% Similarity=0.165 Sum_probs=49.2
Q ss_pred CCcEEEEcCCCCCCCH-----HHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCc-ee
Q 024697 30 TYTKVFVGGLAWETQS-----ETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGR-RA 102 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte-----~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr-~l 102 (264)
-.+.+++.+|..++-. ...+.+|..+-+.....+++. +++.-|.|.+.+.|..|..++. ..+.|+ .+
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~ 82 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNEL 82 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceE
Confidence 3456777777766432 234455665544444444333 4466688999999999998865 558888 88
Q ss_pred EEEeccCC
Q 024697 103 NCNLASLG 110 (264)
Q Consensus 103 ~V~~a~~~ 110 (264)
++-++...
T Consensus 83 k~yfaQ~~ 90 (193)
T KOG4019|consen 83 KLYFAQPG 90 (193)
T ss_pred EEEEccCC
Confidence 88787544
No 157
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=50.48 E-value=60 Score=23.89 Aligned_cols=58 Identities=10% Similarity=0.149 Sum_probs=41.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhhc-CC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC
Q 024697 33 KVFVGGLAWETQSETMRRYFEQ-FG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP 93 (264)
Q Consensus 33 ~lfVgnLp~~vte~~L~~~F~~-fG-~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~ 93 (264)
+-|+-.++.+.+..++++.++. |+ .|.+|..+.-+. ..-=|||++...++|.......
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHhh
Confidence 3444557889999999999987 55 666776555432 1236899999988888776543
No 158
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=50.27 E-value=1.2e+02 Score=30.72 Aligned_cols=69 Identities=10% Similarity=0.010 Sum_probs=47.8
Q ss_pred cEEEEc-CCCCCCCHHHHHHHhhcCCCEE-----EEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEE
Q 024697 32 TKVFVG-GLAWETQSETMRRYFEQFGEIL-----EAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (264)
Q Consensus 32 ~~lfVg-nLp~~vte~~L~~~F~~fG~I~-----~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V 104 (264)
.++||. +=...++..+|-.++..-+.|. .++|..+ |.||+... +.|.+.++.++ ..+.|++|.|
T Consensus 487 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~ 557 (629)
T PRK11634 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELPK-GMPGEVLQHFTRTRILNKPMNM 557 (629)
T ss_pred EEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcCh-hhHHHHHHHhccccccCCceEE
Confidence 456664 3455688888888887655443 3444333 88999864 55777887765 5599999999
Q ss_pred EeccC
Q 024697 105 NLASL 109 (264)
Q Consensus 105 ~~a~~ 109 (264)
+.+..
T Consensus 558 ~~~~~ 562 (629)
T PRK11634 558 QLLGD 562 (629)
T ss_pred EECCC
Confidence 98853
No 159
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=50.21 E-value=1.4 Score=41.78 Aligned_cols=76 Identities=17% Similarity=0.232 Sum_probs=61.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEE-eecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEe
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVV-ITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v-~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~ 106 (264)
...+++-|.|++....++-|..++..||.++.|.+ ++|..| ...-|+|.+.+.+..||.+++ ..+....++|.+
T Consensus 78 qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Y 153 (584)
T KOG2193|consen 78 QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGY 153 (584)
T ss_pred HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcchHhhhhhhhccc
Confidence 35678999999999999999999999999998854 444432 233478999999999999966 458888888887
Q ss_pred cc
Q 024697 107 AS 108 (264)
Q Consensus 107 a~ 108 (264)
-.
T Consensus 154 iP 155 (584)
T KOG2193|consen 154 IP 155 (584)
T ss_pred Cc
Confidence 64
No 160
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=49.58 E-value=15 Score=33.16 Aligned_cols=36 Identities=22% Similarity=0.472 Sum_probs=28.2
Q ss_pred CCCcEEEEcCCCCC------------CCHHHHHHHhhcCCCEEEEEEe
Q 024697 29 TTYTKVFVGGLAWE------------TQSETMRRYFEQFGEILEAVVI 64 (264)
Q Consensus 29 ~~~~~lfVgnLp~~------------vte~~L~~~F~~fG~I~~v~v~ 64 (264)
+...+|++.+||.. -+|+.|+..|+.||+|..|+|.
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 45567888777643 4678899999999999998873
No 161
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=48.50 E-value=74 Score=20.96 Aligned_cols=55 Identities=15% Similarity=0.125 Sum_probs=41.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCH----HHHHHHHhCC
Q 024697 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP----EAARRACADP 93 (264)
Q Consensus 33 ~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~----e~A~~Ai~~~ 93 (264)
+|.|.||.-.--...+++.+...-.|.++.+-.. .+-.-|+|... ++..++|++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~------~~~v~v~~~~~~~~~~~i~~~i~~~ 59 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE------TKTVTVTYDPDKTSIEKIIEAIEKA 59 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEESTTTSCHHHHHHHHHHT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC------CCEEEEEEecCCCCHHHHHHHHHHh
Confidence 4678888888888899999999989999888554 34677888643 5666666654
No 162
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=47.98 E-value=19 Score=32.67 Aligned_cols=32 Identities=22% Similarity=0.129 Sum_probs=23.1
Q ss_pred EEEEeCCHHHHHHHHhCCCCCcCCceeEEEecc
Q 024697 76 GFVTFREPEAARRACADPTPFIDGRRANCNLAS 108 (264)
Q Consensus 76 gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~a~ 108 (264)
|||+|++.++|+.|++.... .+.++++|+.|-
T Consensus 1 aFVtF~~~~~a~~~~q~~~~-~~~~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLS-KRPNSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhc-CCCCCceEeeCC
Confidence 69999999999999986321 223555777664
No 163
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=47.68 E-value=13 Score=33.13 Aligned_cols=79 Identities=11% Similarity=0.194 Sum_probs=59.4
Q ss_pred CCCCcEEEEcCCCCCCCHHH-H--HHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeE
Q 024697 28 DTTYTKVFVGGLAWETQSET-M--RRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~-L--~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~ 103 (264)
+.....+|++++-.++..+- | ...|+.+-.+...++++++. +.-++++|+.|...+...++-.+.+ +.|.-..|+
T Consensus 93 ~P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR 171 (290)
T KOG0226|consen 93 APAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEKKKIGKPPVR 171 (290)
T ss_pred CcccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhccccccccccCccee
Confidence 34556778888887777665 4 78888888888888988874 7889999999998888888877744 556666555
Q ss_pred EEec
Q 024697 104 CNLA 107 (264)
Q Consensus 104 V~~a 107 (264)
+.-+
T Consensus 172 ~a~g 175 (290)
T KOG0226|consen 172 LAAG 175 (290)
T ss_pred eccc
Confidence 5433
No 164
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=47.41 E-value=9.3 Score=36.12 Aligned_cols=62 Identities=18% Similarity=0.147 Sum_probs=51.0
Q ss_pred CCcEEEEcCCCCCCCHH--------HHHHHhhc--CCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHh
Q 024697 30 TYTKVFVGGLAWETQSE--------TMRRYFEQ--FGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACA 91 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte~--------~L~~~F~~--fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~ 91 (264)
.-+.+|+.+...+.+.+ ++..+|.. .+.+.-+..-+|..+..++|..|++|...+.+++.+.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 34567888777766655 89999988 6777888887887678889999999999999999995
No 165
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=46.23 E-value=84 Score=22.70 Aligned_cols=58 Identities=12% Similarity=0.163 Sum_probs=40.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhhc-CC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC
Q 024697 33 KVFVGGLAWETQSETMRRYFEQ-FG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP 93 (264)
Q Consensus 33 ~lfVgnLp~~vte~~L~~~F~~-fG-~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~ 93 (264)
+-|+-.++.+.+..+|++.++. |+ .|.+|..+.-+. ..-=|||++...++|...-...
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHhh
Confidence 4555568899999999998887 55 566665554431 1225899999888887765543
No 166
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=45.97 E-value=34 Score=26.94 Aligned_cols=46 Identities=20% Similarity=0.417 Sum_probs=28.9
Q ss_pred CCCHHHHHHHhhc-CCCEEEEE----EeecCCCCCccceEEEEeCCHHHHHH
Q 024697 42 ETQSETMRRYFEQ-FGEILEAV----VITDKNTGRSKGYGFVTFREPEAARR 88 (264)
Q Consensus 42 ~vte~~L~~~F~~-fG~I~~v~----v~~d~~tg~skG~gFV~F~~~e~A~~ 88 (264)
+++.+||++-+.+ |-.-.++. +-+.-.+|++.|||.| |++.|.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 5788888877654 33323333 3333445888899966 777777664
No 167
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=45.43 E-value=16 Score=22.57 Aligned_cols=16 Identities=13% Similarity=0.428 Sum_probs=10.5
Q ss_pred CCCCHHHHHHHhhcCC
Q 024697 41 WETQSETMRRYFEQFG 56 (264)
Q Consensus 41 ~~vte~~L~~~F~~fG 56 (264)
.++++++|+++|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4789999999998764
No 168
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=45.28 E-value=26 Score=26.09 Aligned_cols=32 Identities=19% Similarity=0.385 Sum_probs=24.5
Q ss_pred EEEEeCCHHHHHHHHhCCC-CC-cCCceeEEEec
Q 024697 76 GFVTFREPEAARRACADPT-PF-IDGRRANCNLA 107 (264)
Q Consensus 76 gFV~F~~~e~A~~Ai~~~~-~~-i~Gr~l~V~~a 107 (264)
|.|+|.+.+-|++.|+... .. +++..+.|...
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~ 34 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVS 34 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEE
Confidence 5899999999999998844 33 77777666544
No 169
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=44.99 E-value=3.1 Score=28.18 Aligned_cols=37 Identities=22% Similarity=0.327 Sum_probs=20.6
Q ss_pred ccceEEEEeCC-HHHHHHHHhCCCCCcCCceeEEEecc
Q 024697 72 SKGYGFVTFRE-PEAARRACADPTPFIDGRRANCNLAS 108 (264)
Q Consensus 72 skG~gFV~F~~-~e~A~~Ai~~~~~~i~Gr~l~V~~a~ 108 (264)
.+|||||.-.+ .++.--.-+.++.-++|-++.|.+..
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGAMDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS-TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCCCCCCEEEEEEec
Confidence 58999999987 11111111224456888888888775
No 170
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=44.35 E-value=14 Score=27.55 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=20.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHh
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYF 52 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F 52 (264)
...++|.|.|||...+|++|++.+
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeE
Confidence 456899999999999999999764
No 171
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=43.86 E-value=48 Score=24.51 Aligned_cols=49 Identities=22% Similarity=0.366 Sum_probs=34.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeC
Q 024697 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR 81 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~ 81 (264)
-..-||||+++..+.|.-.+.+.+..++-.-+-+-.+ ....||.|-+..
T Consensus 24 i~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~---~neqG~~~~t~G 72 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSD---NNEQGFDFRTLG 72 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEcc---CCCCCEEEEEeC
Confidence 4567999999999988887777776544333333333 226889998884
No 172
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=42.87 E-value=41 Score=25.50 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=33.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCC
Q 024697 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRE 82 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~ 82 (264)
-..-||||+++..+.|.-.+.+-+.+++- ++.++... ....||.|.++.+
T Consensus 26 v~~GVyVg~~S~rVRd~lW~~v~~~~~~G-~avmv~~~--~~eqG~~~~t~G~ 75 (97)
T PRK11558 26 VRAGVYVGDVSRRIREMIWQQVTQLAEEG-NVVMAWAT--NTESGFEFQTFGE 75 (97)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCC-cEEEEEcC--CCCCCcEEEecCC
Confidence 35679999999999887776666666542 23333321 2334999998865
No 173
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.85 E-value=4.5 Score=38.63 Aligned_cols=76 Identities=7% Similarity=-0.138 Sum_probs=59.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCceeEEEecc
Q 024697 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCNLAS 108 (264)
Q Consensus 32 ~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l~V~~a~ 108 (264)
.+.|+..|+...++++|.-+|..+|-|..+.+-+--+.+..+-.+||+-.+ +++..+|..+ ...+.+..++|.++.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 456788899999999999999999999998876665556677788998765 4566677664 355788888888775
No 174
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.33 E-value=3.6e+02 Score=26.27 Aligned_cols=13 Identities=31% Similarity=0.675 Sum_probs=7.8
Q ss_pred HHHHhhcCCCEEE
Q 024697 48 MRRYFEQFGEILE 60 (264)
Q Consensus 48 L~~~F~~fG~I~~ 60 (264)
|-.+|+-||.|..
T Consensus 247 lG~I~EiFGpV~~ 259 (483)
T KOG2236|consen 247 LGQIFEIFGPVKN 259 (483)
T ss_pred chhhhhhhcccCC
Confidence 4556666776643
No 175
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.24 E-value=1.4e+02 Score=24.45 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=39.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcC---CCEEEEEEeecCCC---------CCccc-eEEEEeCCHHHH
Q 024697 31 YTKVFVGGLAWETQSETMRRYFEQF---GEILEAVVITDKNT---------GRSKG-YGFVTFREPEAA 86 (264)
Q Consensus 31 ~~~lfVgnLp~~vte~~L~~~F~~f---G~I~~v~v~~d~~t---------g~skG-~gFV~F~~~e~A 86 (264)
..+|++.-+...++|++.+++.++= ++|.+|.+-+.+++ ...+. |-+|.|++-...
T Consensus 87 ~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~l 155 (161)
T COG5353 87 DGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKEL 155 (161)
T ss_pred CCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchhh
Confidence 3799999999999999999999764 56777766544311 12234 778888875543
No 176
>PRK11901 hypothetical protein; Reviewed
Probab=38.18 E-value=95 Score=28.74 Aligned_cols=57 Identities=23% Similarity=0.321 Sum_probs=37.6
Q ss_pred CCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEE--EeCCHHHHHHHHhCCCCCc
Q 024697 39 LAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFV--TFREPEAARRACADPTPFI 97 (264)
Q Consensus 39 Lp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV--~F~~~e~A~~Ai~~~~~~i 97 (264)
|--..+++.|++|..+.+ +..++|.+-..+|+ ..|..| .|.+.++|++||+.+-..|
T Consensus 250 L~Aas~~~~L~~f~~~~~-L~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 250 LSSASRSDTLNAYAKKQN-LSHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred eecCCCHHHHHHHHHHcC-cCceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 344456888999888775 45565555443343 234433 6899999999999876443
No 177
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=36.84 E-value=79 Score=24.01 Aligned_cols=47 Identities=30% Similarity=0.463 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHhh-cCCCEEEEEEeecCCC----CCccceEEEEeCCHHHHHH
Q 024697 41 WETQSETMRRYFE-QFGEILEAVVITDKNT----GRSKGYGFVTFREPEAARR 88 (264)
Q Consensus 41 ~~vte~~L~~~F~-~fG~I~~v~v~~d~~t----g~skG~gFV~F~~~e~A~~ 88 (264)
.+.+..+|++-+. .++.=.++.|+..-.| +++.|||.| |+|.+.|.+
T Consensus 29 ~tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 29 ATPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 3567778876664 4553334444443322 556666655 566655554
No 178
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=32.30 E-value=1.9e+02 Score=20.69 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=37.2
Q ss_pred EEcCCCCCCCHHHHHHHh-------hcCCCEEEEEEeecCCCCC-ccc--eE-EEEeCCHHHHHHHHhC
Q 024697 35 FVGGLAWETQSETMRRYF-------EQFGEILEAVVITDKNTGR-SKG--YG-FVTFREPEAARRACAD 92 (264)
Q Consensus 35 fVgnLp~~vte~~L~~~F-------~~fG~I~~v~v~~d~~tg~-skG--~g-FV~F~~~e~A~~Ai~~ 92 (264)
.+-.|..+++++++++++ .....|+++.+-++..... .+| ++ +++|.|.++.+.-...
T Consensus 5 vlfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y~~h 73 (97)
T PF07876_consen 5 VLFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAYQTH 73 (97)
T ss_dssp EEEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHHHTS
T ss_pred EEEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHHHHHcC
Confidence 334577888888775544 3466788888777653332 244 44 3689998887766654
No 179
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=31.28 E-value=2e+02 Score=20.67 Aligned_cols=63 Identities=11% Similarity=0.073 Sum_probs=41.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcC
Q 024697 33 KVFVGGLAWETQSETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFID 98 (264)
Q Consensus 33 ~lfVgnLp~~vte~~L~~~F~~fG-~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~ 98 (264)
.|+|.|-|-- -+.+-.+|+.-| .|+++.+-...+.+.++ +-++...+.+..++.++.+++.++
T Consensus 6 si~v~n~pGV--L~Ri~~lf~rRgfNI~Sl~vg~te~~~~sr-iti~~~~~~~~i~qi~kQL~KLid 69 (76)
T PRK06737 6 SLVIHNDPSV--LLRISGIFARRGYYISSLNLNERDTSGVSE-MKLTAVCTENEATLLVSQLKKLIN 69 (76)
T ss_pred EEEEecCCCH--HHHHHHHHhccCcceEEEEecccCCCCeeE-EEEEEECCHHHHHHHHHHHhCCcC
Confidence 4555554433 245778888877 78887765433334444 566767899999988888777655
No 180
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=30.66 E-value=6.7 Score=38.53 Aligned_cols=64 Identities=13% Similarity=0.060 Sum_probs=47.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeC---CHHHHHHHHh
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR---EPEAARRACA 91 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~---~~e~A~~Ai~ 91 (264)
....|+|||.|+..+++-++|+.+++.+--+.++.+-.+..-.+.+-+++|+|+ +..+|.-||.
T Consensus 228 ~hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn 294 (648)
T KOG2295|consen 228 THKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALN 294 (648)
T ss_pred hhHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhh
Confidence 456789999999999999999999998877777666544333445668889996 5555555554
No 181
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=30.10 E-value=1.1e+02 Score=25.91 Aligned_cols=57 Identities=16% Similarity=0.050 Sum_probs=37.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcC-CCEEEEEEeecCCCC--CccceEEEEeCCHHHHHHHHhCC
Q 024697 31 YTKVFVGGLAWETQSETMRRYFEQF-GEILEAVVITDKNTG--RSKGYGFVTFREPEAARRACADP 93 (264)
Q Consensus 31 ~~~lfVgnLp~~vte~~L~~~F~~f-G~I~~v~v~~d~~tg--~skG~gFV~F~~~e~A~~Ai~~~ 93 (264)
.+++|.. .|++.|.++..-- |.+..+..-+.. .+ ..+|--||+|.+.+.|.+.++..
T Consensus 111 ~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~~ 170 (205)
T KOG4213|consen 111 ERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDTH 170 (205)
T ss_pred Hhhhhcc-----CCHHHHHHHHHHhcccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhhh
Confidence 4455554 5566665554322 577666553332 23 56899999999999999988763
No 182
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=29.91 E-value=43 Score=24.89 Aligned_cols=50 Identities=18% Similarity=0.274 Sum_probs=31.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhc-CCCEEEEEEeecCCCCCccceEEEEeCC
Q 024697 30 TYTKVFVGGLAWETQSETMRRYFEQ-FGEILEAVVITDKNTGRSKGYGFVTFRE 82 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte~~L~~~F~~-fG~I~~v~v~~d~~tg~skG~gFV~F~~ 82 (264)
-..-||||+++..+.|.-.+.+-+. .++- .+.++.. +....||.|-++.+
T Consensus 24 v~~GVyVg~~s~rVRe~lW~~v~~~~~~~G-~avm~~~--~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 24 PRAGVYVGGVSASVRERIWDYLAQHCPPKG-SLVITWS--SNTCPGFEFFTLGE 74 (87)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCc-cEEEEEe--CCCCCCcEEEecCC
Confidence 3467999999999887766555554 2332 2333333 23356799888765
No 183
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=29.29 E-value=92 Score=30.44 Aligned_cols=60 Identities=15% Similarity=0.180 Sum_probs=44.9
Q ss_pred EEEcCCCCCCCH---HHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCcee
Q 024697 34 VFVGGLAWETQS---ETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRA 102 (264)
Q Consensus 34 lfVgnLp~~vte---~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l 102 (264)
=+||||..-... ..|+++=++||.|-.+++-.. -.|.-.+.+.|+.|+..++..+.+|..
T Consensus 35 PiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 35 PIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred CccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHhCCccccCCCC
Confidence 357887754433 456666678999998887332 278889999999999998877888775
No 184
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=27.45 E-value=1.2e+02 Score=24.36 Aligned_cols=46 Identities=11% Similarity=0.406 Sum_probs=24.9
Q ss_pred CCCHHHHHHHhhc-CC-CEEEEEEeecC----CCCCccceEEEEeCCHHHHHH
Q 024697 42 ETQSETMRRYFEQ-FG-EILEAVVITDK----NTGRSKGYGFVTFREPEAARR 88 (264)
Q Consensus 42 ~vte~~L~~~F~~-fG-~I~~v~v~~d~----~tg~skG~gFV~F~~~e~A~~ 88 (264)
..+..+|++-+.. |+ .=.++.++..- ..+++.|||.| |+|.|.+.+
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk 86 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKK 86 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 5678888877754 55 22333333332 23566677655 555555443
No 185
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=27.16 E-value=1.4e+02 Score=25.50 Aligned_cols=45 Identities=29% Similarity=0.365 Sum_probs=30.2
Q ss_pred CHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhC
Q 024697 44 QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92 (264)
Q Consensus 44 te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~ 92 (264)
+.++.+++++.++.-. +.|-.| |...|-+-+...+.++|.+||++
T Consensus 25 ~~~~A~~~l~~~~~p~-~ViKad---Gla~GKGV~i~~~~~eA~~~l~~ 69 (194)
T PF01071_consen 25 DYEEALEYLEEQGYPY-VVIKAD---GLAAGKGVVIADDREEALEALRE 69 (194)
T ss_dssp SHHHHHHHHHHHSSSE-EEEEES---SSCTTTSEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCc-eEEccC---CCCCCCEEEEeCCHHHHHHHHHH
Confidence 5677778777765433 233333 55555556667999999999987
No 186
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=27.07 E-value=80 Score=22.05 Aligned_cols=33 Identities=27% Similarity=0.395 Sum_probs=24.2
Q ss_pred CHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEE
Q 024697 44 QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFV 78 (264)
Q Consensus 44 te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV 78 (264)
-|.+|++.|-+--+|+++.|...+ .-.+|-|||
T Consensus 31 ~e~eler~fl~~P~v~e~~l~EKK--ri~~G~gyV 63 (64)
T PF13046_consen 31 VEVELERHFLPLPEVKEVALYEKK--RIRKGAGYV 63 (64)
T ss_pred HHHHhhhhccCCCCceEEEEEEEE--eeeCCceeE
Confidence 456788888888899999887765 334566665
No 187
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=26.69 E-value=1.2e+02 Score=22.19 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=20.9
Q ss_pred CEEEEEEeecCCCCCccceEEEEeCC
Q 024697 57 EILEAVVITDKNTGRSKGYGFVTFRE 82 (264)
Q Consensus 57 ~I~~v~v~~d~~tg~skG~gFV~F~~ 82 (264)
+|++++|-.-...++-|++|=|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47788887766569999999999987
No 188
>PRK10905 cell division protein DamX; Validated
Probab=26.48 E-value=1.4e+02 Score=27.60 Aligned_cols=58 Identities=17% Similarity=0.234 Sum_probs=35.4
Q ss_pred CCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEE--EeCCHHHHHHHHhCCCCCc
Q 024697 38 GLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFV--TFREPEAARRACADPTPFI 97 (264)
Q Consensus 38 nLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV--~F~~~e~A~~Ai~~~~~~i 97 (264)
-|.--.+++.|++|..+.+. ....+.....+|+. .|-.+ .|.+.++|++||+.+-..|
T Consensus 251 QL~A~Ss~~~l~~fakKlgL-~~y~vy~TtRnGkp-WYVV~yG~YaSraeAk~AiakLPa~v 310 (328)
T PRK10905 251 QLSSSSNYDNLNGWAKKENL-KNYVVYETTRNGQP-WYVLVSGVYASKEEAKRAVSTLPADV 310 (328)
T ss_pred EEEecCCHHHHHHHHHHcCC-CceEEEEeccCCce-EEEEEecCCCCHHHHHHHHHHCCHHH
Confidence 34444567888888887753 33333333223432 24332 6899999999999875443
No 189
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=24.95 E-value=89 Score=26.78 Aligned_cols=53 Identities=26% Similarity=0.419 Sum_probs=34.0
Q ss_pred CCHHHHHHHhhcCCC---EEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhC-CCCCcC
Q 024697 43 TQSETMRRYFEQFGE---ILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD-PTPFID 98 (264)
Q Consensus 43 vte~~L~~~F~~fG~---I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~-~~~~i~ 98 (264)
.+.+++++.....|. |....|... |+.|+=+...-.|.++|..+.++ ++..|.
T Consensus 25 ~s~eea~~~~~~l~~~~~VvKaQvl~G---gRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 25 TSPEEAREAAKELGGKPLVVKAQVLAG---GRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEE-SSSS---TTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred CCHHHHHHHHHHhCCCcEEEEEeEeec---CcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 356777777776654 445555433 66676555555688999999988 455554
No 190
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=24.93 E-value=2e+02 Score=19.90 Aligned_cols=41 Identities=20% Similarity=0.311 Sum_probs=27.2
Q ss_pred HHHHHHhhcCCCEEEEEEeecCCCCCc-cceEEEEeCCHHHHHHHHhC
Q 024697 46 ETMRRYFEQFGEILEAVVITDKNTGRS-KGYGFVTFREPEAARRACAD 92 (264)
Q Consensus 46 ~~L~~~F~~fG~I~~v~v~~d~~tg~s-kG~gFV~F~~~e~A~~Ai~~ 92 (264)
++|++.+.+.| +.-+++ +|-. -++.|+.+.+.++++++++.
T Consensus 37 ~~~~~~~~~~G-a~~~~~-----sGsG~G~~v~~l~~~~~~~~~v~~~ 78 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKM-----SGSGGGPTVFALCKDEDDAERVAEA 78 (85)
T ss_dssp HHHHHHHHHTT-ESEEEE-----ETTSSSSEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceec-----CCCCCCCeEEEEECCHHHHHHHHHH
Confidence 35667778888 444444 3332 34778888888888887765
No 191
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=24.88 E-value=1.3e+02 Score=21.81 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=20.9
Q ss_pred ccceEEEEeCCHHHHHHHHhCCCC
Q 024697 72 SKGYGFVTFREPEAARRACADPTP 95 (264)
Q Consensus 72 skG~gFV~F~~~e~A~~Ai~~~~~ 95 (264)
-|||-|||=.+.+++.+||+...+
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TT
T ss_pred CceEEEEEeCCHHHHHHHHhcccc
Confidence 599999999999999999998544
No 192
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=24.61 E-value=2.8e+02 Score=20.33 Aligned_cols=44 Identities=20% Similarity=0.181 Sum_probs=31.4
Q ss_pred HHHHHHHhhcCC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhC
Q 024697 45 SETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92 (264)
Q Consensus 45 e~~L~~~F~~fG-~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~ 92 (264)
.+.+++++++.| +++++.+.. |.---...+++.|.+.|.++.-.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~----G~yD~v~i~eaPD~~~a~~~~l~ 66 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTL----GEYDFVVIVEAPDDETAAAASLA 66 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEec----CCCCEEEEEEcCCHHHHHHHHHH
Confidence 456778887765 788877765 44455778899999888876643
No 193
>PF14401 RLAN: RimK-like ATPgrasp N-terminal domain
Probab=24.28 E-value=1.6e+02 Score=24.12 Aligned_cols=62 Identities=16% Similarity=0.214 Sum_probs=42.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHH
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRAC 90 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG-~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai 90 (264)
.-.-+||.|.-+..--++--+.+|+.|- .|.++.+.++....+-+....+...+..+.+++.
T Consensus 85 ~~~l~iyFG~~~~~~~~~lAr~lFe~F~~PlL~v~~~~~~~~w~i~~i~~~~~~~l~~~e~~~ 147 (153)
T PF14401_consen 85 RFELSIYFGQTPDPRLERLARQLFERFPCPLLEVEFVRDDGKWRISSIKPLSLSELSEEEQDF 147 (153)
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHHhCCCceEEEEEEecCCcEEEeeEeecChhhCCHHHHHH
Confidence 3345788887766666666789999986 6788888777543455666777776666655543
No 194
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=24.07 E-value=2.5e+02 Score=19.42 Aligned_cols=57 Identities=26% Similarity=0.272 Sum_probs=42.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCC----HHHHHHHHhCCC
Q 024697 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRE----PEAARRACADPT 94 (264)
Q Consensus 32 ~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~----~e~A~~Ai~~~~ 94 (264)
.+|.|-++.-.--...+++.++.-.-+.++++-.+. +-++|+|++ .++...||++.+
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~------~~~~V~~d~~~~~~~~i~~ai~~aG 64 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEK------GTATVTFDSNKVDIEAIIEAIEDAG 64 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEccc------CeEEEEEcCCcCCHHHHHHHHHHcC
Confidence 467888888887788899999988889998886663 358999987 345555555543
No 195
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=22.96 E-value=1.4e+02 Score=26.24 Aligned_cols=48 Identities=29% Similarity=0.512 Sum_probs=33.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhh--cCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC
Q 024697 30 TYTKVFVGGLAWETQSETMRRYFE--QFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte~~L~~~F~--~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~ 94 (264)
....++|+|||.++++.-|..++. .+|.+. .+.+-..|.|++.+...+
T Consensus 96 ~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~-----------------~~l~vq~e~a~rl~a~pg 145 (262)
T PF00398_consen 96 NQPLLVVGNLPYNISSPILRKLLELYRFGRVR-----------------MVLMVQKEVAERLLAKPG 145 (262)
T ss_dssp SSEEEEEEEETGTGHHHHHHHHHHHGGGCEEE-----------------EEEEEEHHHHHHHHTSTT
T ss_pred CCceEEEEEecccchHHHHHHHhhcccccccc-----------------eEEEEehhhhhhccCCCC
Confidence 356789999999999999999987 333322 222334578888887643
No 196
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=22.51 E-value=71 Score=32.24 Aligned_cols=77 Identities=18% Similarity=0.207 Sum_probs=59.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEE
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANC 104 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V 104 (264)
+....+||+.+-...-+..-+-.++..++.++..+++.+...+....-++++|.-...++.|....++.+..+.+++
T Consensus 508 k~s~p~i~~~~~~~~s~~~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s~p~k~fa~~~~ks 584 (681)
T KOG3702|consen 508 KASQPTIFVANGHGGSNPDSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKSLPNKKFASKCLKS 584 (681)
T ss_pred ccCCCceecccccccCCCcchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhccccccccccceec
Confidence 34445888888888888888999999999999999988877777777899999999888777665554444444433
No 197
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=22.46 E-value=2.2e+02 Score=27.86 Aligned_cols=49 Identities=18% Similarity=0.141 Sum_probs=35.8
Q ss_pred CCHHHHHHHhh----cCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhC
Q 024697 43 TQSETMRRYFE----QFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92 (264)
Q Consensus 43 vte~~L~~~F~----~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~ 92 (264)
.+.-+|..+|. .+|-|+++.+...+. -+.+...++.|.+.++|.+++..
T Consensus 201 ~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~-p~~~~~~~~~f~~~~~a~~~~~~ 253 (499)
T PRK11230 201 SPGFDLLALFTGSEGMLGVVTEVTVKLLPK-PPVARVLLASFDSVEKAGLAVGD 253 (499)
T ss_pred CCccchHhhhccCCCccEEEEEEEEEEEcC-CcceEEEEEECCCHHHHHHHHHH
Confidence 33456777775 588899887766553 33456778899999999999865
No 198
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=22.12 E-value=1e+02 Score=23.01 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=28.5
Q ss_pred EEEEcCCCCCCCHHHHH---HHhhcCCCEEEEEE--eecCCCCCccceEEEEeC
Q 024697 33 KVFVGGLAWETQSETMR---RYFEQFGEILEAVV--ITDKNTGRSKGYGFVTFR 81 (264)
Q Consensus 33 ~lfVgnLp~~vte~~L~---~~F~~fG~I~~v~v--~~d~~tg~skG~gFV~F~ 81 (264)
..|+.+||.++-+.++. +.|..+..-..+.+ ........+.|++.+.+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 45889999999888755 44545543233322 223345677788766553
No 199
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=21.65 E-value=1.8e+02 Score=26.04 Aligned_cols=46 Identities=24% Similarity=0.306 Sum_probs=33.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC
Q 024697 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP 93 (264)
Q Consensus 32 ~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~ 93 (264)
....|+|||.+++..-|..+++..-.+.+..+|.. .|-|++-+..-
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~Q----------------kEva~Rl~A~p 141 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQ----------------KEVAERLVAKP 141 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEEeH----------------HHHHHHHhCCC
Confidence 46679999999999999999987655545444443 46677766653
No 200
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=21.28 E-value=64 Score=25.44 Aligned_cols=72 Identities=8% Similarity=-0.008 Sum_probs=43.8
Q ss_pred CcEEEEcCCC--CCCCHHHHHHHhhcC-CCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEEec
Q 024697 31 YTKVFVGGLA--WETQSETMRRYFEQF-GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLA 107 (264)
Q Consensus 31 ~~~lfVgnLp--~~vte~~L~~~F~~f-G~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~a 107 (264)
.+...|+.+- .+++-+.|...+.+. +....+++..- ..++..+.|.+.++++++++...-.+++..|.++.-
T Consensus 15 ~~~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W 89 (153)
T PF14111_consen 15 WQLCLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRW 89 (153)
T ss_pred cCeEEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEecccccccccchhhhhh
Confidence 3445566553 245666676666542 22223333221 145889999999999999987655577776666544
No 201
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=20.89 E-value=3.5e+02 Score=19.90 Aligned_cols=66 Identities=12% Similarity=0.034 Sum_probs=43.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCC-CEEEEEEeecCCCCCccceEEEEe-CCHHHHHHHHhCCCCCcCCce
Q 024697 33 KVFVGGLAWETQSETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTF-REPEAARRACADPTPFIDGRR 101 (264)
Q Consensus 33 ~lfVgnLp~~vte~~L~~~F~~fG-~I~~v~v~~d~~tg~skG~gFV~F-~~~e~A~~Ai~~~~~~i~Gr~ 101 (264)
+++|.|-+-- -..+-.+|++-| .|+++.+-.....+-|| +-+|.- .|.+..++.++.+++.++=.+
T Consensus 6 svlVeN~~GV--L~Rit~lFsRRg~NI~SLtvg~Te~~~iSR-mtivv~~~d~~~ieqI~kQL~KlidVik 73 (84)
T PRK13562 6 KLQVADQVST--LNRITSAFVRLQYNIDTLHVTHSEQPGISN-MEIQVDIQDDTSLHILIKKLKQQINVLT 73 (84)
T ss_pred EEEEECCCCH--HHHHHHHHhccCcCeeeEEecccCCCCceE-EEEEEeCCCHHHHHHHHHHHhCCccEEE
Confidence 4455544432 245778898877 78888775554446666 666765 788888888888877655433
No 202
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=20.14 E-value=2.8e+02 Score=18.44 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=31.2
Q ss_pred HHHHHHHhhcCC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC
Q 024697 45 SETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (264)
Q Consensus 45 e~~L~~~F~~fG-~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~ 94 (264)
-.++-++|.+.| .|..+.+.... . ++.--+.+++.+.|.++|++.+
T Consensus 15 La~v~~~l~~~~inI~~i~~~~~~---~-~~~~rl~~~~~~~~~~~L~~~G 61 (66)
T cd04908 15 LAAVTEILSEAGINIRALSIADTS---E-FGILRLIVSDPDKAKEALKEAG 61 (66)
T ss_pred HHHHHHHHHHCCCCEEEEEEEecC---C-CCEEEEEECCHHHHHHHHHHCC
Confidence 456777777665 67777664432 2 4666667788888888888754
No 203
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.12 E-value=2.8e+02 Score=18.43 Aligned_cols=48 Identities=13% Similarity=0.179 Sum_probs=27.9
Q ss_pred HHHHHHHhhcCC-CEEEEEEeecCCCCCccceEEEEeC--CHHHHHHHHhCCC
Q 024697 45 SETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFR--EPEAARRACADPT 94 (264)
Q Consensus 45 e~~L~~~F~~fG-~I~~v~v~~d~~tg~skG~gFV~F~--~~e~A~~Ai~~~~ 94 (264)
-.+|-++|.+.| .|.++...... .......+|.++ +.+++.++|++.+
T Consensus 15 l~~i~~~l~~~~inI~~i~~~~~~--~~~~~~v~i~v~~~~~~~~~~~L~~~G 65 (72)
T cd04883 15 LADIAAIFKDRGVNIVSVLVYPSK--EEDNKILVFRVQTMNPRPIIEDLRRAG 65 (72)
T ss_pred HHHHHHHHHHcCCCEEEEEEeccC--CCCeEEEEEEEecCCHHHHHHHHHHCC
Confidence 456777887776 67766543332 222334445554 6667777777654
Done!