Query 024697
Match_columns 264
No_of_seqs 344 out of 1913
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 12:50:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024697.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024697hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cqd_A RNA-binding region cont 99.9 4.2E-22 1.5E-26 154.4 15.4 88 24-111 10-97 (116)
2 4fxv_A ELAV-like protein 1; RN 99.9 4.2E-22 1.4E-26 151.1 10.4 81 29-109 17-98 (99)
3 2cpz_A CUG triplet repeat RNA- 99.9 1.5E-21 5.1E-26 151.1 12.4 89 25-113 19-108 (115)
4 2kxn_B Transformer-2 protein h 99.9 7.4E-22 2.5E-26 156.8 10.2 96 17-112 32-128 (129)
5 3s8s_A Histone-lysine N-methyl 99.9 4.5E-22 1.6E-26 153.8 8.4 85 29-113 4-89 (110)
6 2dgo_A Cytotoxic granule-assoc 99.9 8.4E-21 2.9E-25 146.7 14.9 89 26-114 10-99 (115)
7 2rs2_A Musashi-1, RNA-binding 99.9 1.6E-21 5.4E-26 150.2 10.4 89 25-113 19-107 (109)
8 2dgs_A DAZ-associated protein 99.9 5.1E-21 1.8E-25 144.1 12.9 86 28-113 7-92 (99)
9 3s7r_A Heterogeneous nuclear r 99.9 2.5E-21 8.6E-26 142.3 10.7 83 25-107 5-87 (87)
10 2do4_A Squamous cell carcinoma 99.9 4.7E-21 1.6E-25 144.5 12.2 85 26-111 12-97 (100)
11 1x4b_A Heterogeneous nuclear r 99.9 6.8E-21 2.3E-25 147.6 13.4 85 28-112 24-108 (116)
12 2dh8_A DAZ-associated protein 99.9 1.8E-21 6.3E-26 148.1 9.8 86 27-112 12-97 (105)
13 2lxi_A RNA-binding protein 10; 99.8 8.6E-22 2.9E-26 147.0 6.8 81 31-111 1-84 (91)
14 2dng_A Eukaryotic translation 99.8 1.6E-20 5.5E-25 142.5 13.6 86 26-112 10-95 (103)
15 2cq0_A Eukaryotic translation 99.8 9.1E-21 3.1E-25 143.7 12.0 86 27-112 11-97 (103)
16 2dnm_A SRP46 splicing factor; 99.8 7.1E-21 2.4E-25 144.3 11.4 88 26-113 8-96 (103)
17 1u6f_A Tcubp1, RNA-binding pro 99.8 1E-20 3.5E-25 151.0 12.6 87 27-113 38-125 (139)
18 1wi8_A EIF-4B, eukaryotic tran 99.8 1.2E-20 4.1E-25 143.4 12.3 86 26-112 10-96 (104)
19 1h2v_Z 20 kDa nuclear CAP bind 99.8 7.9E-21 2.7E-25 154.8 11.8 86 28-113 36-122 (156)
20 1x5u_A Splicing factor 3B subu 99.8 1.6E-20 5.6E-25 142.6 12.6 86 27-112 11-97 (105)
21 2cqg_A TDP-43, TAR DNA-binding 99.8 2E-20 6.8E-25 141.8 12.9 87 25-112 9-95 (103)
22 1x4h_A RNA-binding protein 28; 99.8 1.3E-20 4.3E-25 144.5 11.8 88 26-113 10-104 (111)
23 1whw_A Hypothetical protein ri 99.8 1.7E-20 5.7E-25 141.1 12.0 84 29-112 6-90 (99)
24 2lkz_A RNA-binding protein 5; 99.8 1.5E-21 5.2E-26 147.2 6.3 84 26-109 4-94 (95)
25 2dnz_A Probable RNA-binding pr 99.8 2.3E-20 8E-25 139.2 12.5 83 29-111 3-86 (95)
26 2cqb_A Peptidyl-prolyl CIS-tra 99.8 5.8E-21 2E-25 144.4 9.0 86 28-113 9-95 (102)
27 2m2b_A RNA-binding protein 10; 99.8 7.4E-21 2.5E-25 150.9 9.9 88 25-113 17-111 (131)
28 1x4a_A Splicing factor, argini 99.8 3.6E-20 1.2E-24 141.9 13.4 84 25-111 16-100 (109)
29 2khc_A Testis-specific RNP-typ 99.8 1.3E-20 4.5E-25 146.2 10.9 84 25-108 34-118 (118)
30 1wel_A RNA-binding protein 12; 99.8 5.5E-21 1.9E-25 150.1 8.4 88 24-111 18-105 (124)
31 2d9p_A Polyadenylate-binding p 99.8 3.7E-20 1.3E-24 140.3 12.6 87 26-114 10-97 (103)
32 2cph_A RNA binding motif prote 99.8 2.5E-20 8.5E-25 142.0 11.7 88 26-113 10-100 (107)
33 2cq4_A RNA binding motif prote 99.8 7.2E-21 2.5E-25 147.0 8.7 86 26-111 20-105 (114)
34 1x5t_A Splicing factor 3B subu 99.8 1.8E-20 6.2E-25 140.0 10.4 85 29-113 3-89 (96)
35 2dgp_A Bruno-like 4, RNA bindi 99.8 1.8E-20 6.2E-25 142.6 10.6 86 27-112 9-98 (106)
36 4f25_A Polyadenylate-binding p 99.8 1.3E-20 4.6E-25 146.2 9.9 83 30-114 4-87 (115)
37 2fy1_A RNA-binding motif prote 99.8 3.2E-20 1.1E-24 144.5 12.0 84 28-112 4-88 (116)
38 2cpy_A RNA-binding protein 12; 99.8 3.6E-21 1.2E-25 149.1 6.6 84 27-111 11-95 (114)
39 1x5s_A Cold-inducible RNA-bind 99.8 2.4E-20 8.1E-25 141.0 10.8 85 28-112 9-94 (102)
40 2e5h_A Zinc finger CCHC-type a 99.8 2.8E-20 9.6E-25 138.4 11.0 81 28-108 13-94 (94)
41 1p27_B RNA-binding protein 8A; 99.8 2.7E-20 9.2E-25 141.7 11.1 86 26-111 18-104 (106)
42 2dnh_A Bruno-like 5, RNA bindi 99.8 7.1E-20 2.4E-24 139.1 13.2 86 28-114 12-101 (105)
43 3md1_A Nuclear and cytoplasmic 99.8 3.2E-20 1.1E-24 134.9 10.6 79 32-110 2-81 (83)
44 3bs9_A Nucleolysin TIA-1 isofo 99.8 2.1E-20 7.2E-25 137.0 9.6 81 29-109 4-85 (87)
45 2do0_A HnRNP M, heterogeneous 99.8 1.3E-19 4.3E-24 139.7 14.5 86 27-113 11-97 (114)
46 2dhg_A TRNA selenocysteine ass 99.8 3.4E-20 1.2E-24 140.7 10.9 85 28-113 6-93 (104)
47 3p5t_L Cleavage and polyadenyl 99.8 4E-21 1.4E-25 142.5 5.7 80 32-111 2-84 (90)
48 1wg5_A Heterogeneous nuclear r 99.8 9.1E-20 3.1E-24 138.9 12.9 83 28-111 12-95 (104)
49 2div_A TRNA selenocysteine ass 99.8 4.3E-20 1.5E-24 138.9 10.8 82 29-110 7-94 (99)
50 2cqc_A Arginine/serine-rich sp 99.8 3.9E-20 1.4E-24 137.8 10.4 83 27-109 11-94 (95)
51 2cpf_A RNA binding motif prote 99.8 3.5E-20 1.2E-24 139.1 10.1 84 29-112 3-90 (98)
52 2lea_A Serine/arginine-rich sp 99.8 1.9E-20 6.6E-25 149.6 9.1 91 24-114 40-131 (135)
53 2cqi_A Nucleolysin TIAR; RNA r 99.8 8E-20 2.7E-24 138.5 12.1 86 26-113 10-96 (103)
54 2jrs_A RNA-binding protein 39; 99.8 9.5E-20 3.2E-24 140.0 12.5 89 22-110 17-106 (108)
55 1oo0_B CG8781-PA, drosophila Y 99.8 3.2E-20 1.1E-24 142.3 9.8 88 25-112 20-108 (110)
56 2la6_A RNA-binding protein FUS 99.8 6.7E-20 2.3E-24 138.0 11.2 83 26-108 8-99 (99)
57 3ucg_A Polyadenylate-binding p 99.8 6.5E-20 2.2E-24 135.0 10.7 81 30-110 5-85 (89)
58 2ywk_A Putative RNA-binding pr 99.8 4.2E-20 1.4E-24 137.8 9.7 84 25-109 10-94 (95)
59 2cpe_A RNA-binding protein EWS 99.8 5E-20 1.7E-24 141.9 10.4 88 25-112 9-105 (113)
60 3mdf_A Peptidyl-prolyl CIS-tra 99.8 4.5E-20 1.5E-24 134.7 9.4 81 28-108 4-85 (85)
61 1s79_A Lupus LA protein; RRM, 99.8 5.3E-20 1.8E-24 140.6 10.2 82 27-109 7-88 (103)
62 3ex7_B RNA-binding protein 8A; 99.8 5.3E-20 1.8E-24 144.4 10.5 90 25-114 16-106 (126)
63 2dis_A Unnamed protein product 99.8 1.2E-19 4E-24 138.8 12.1 84 30-113 7-95 (109)
64 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.7E-20 5.9E-25 134.4 6.9 76 32-107 1-76 (77)
65 2cq3_A RNA-binding protein 9; 99.8 2.1E-19 7.2E-24 136.1 13.3 86 26-113 10-96 (103)
66 1wez_A HnRNP H', FTP-3, hetero 99.8 7.5E-20 2.6E-24 139.3 10.5 81 28-110 12-92 (102)
67 2x1f_A MRNA 3'-END-processing 99.8 6.7E-20 2.3E-24 137.3 9.8 81 31-111 2-83 (96)
68 1p1t_A Cleavage stimulation fa 99.8 2.1E-20 7.2E-25 141.7 6.9 89 25-113 2-91 (104)
69 1sjq_A Polypyrimidine tract-bi 99.8 3.1E-20 1.1E-24 142.4 7.8 79 28-112 13-94 (105)
70 2mss_A Protein (musashi1); RNA 99.8 3.4E-20 1.2E-24 132.5 7.5 75 33-107 1-75 (75)
71 3n9u_C Cleavage and polyadenyl 99.8 6.8E-20 2.3E-24 150.1 10.2 82 29-110 53-137 (156)
72 1x5o_A RNA binding motif, sing 99.8 3.2E-19 1.1E-23 137.6 13.2 85 24-109 18-111 (114)
73 2db1_A Heterogeneous nuclear r 99.8 5.9E-20 2E-24 143.4 8.9 84 27-111 13-99 (118)
74 4a8x_A RNA-binding protein wit 99.8 6.2E-20 2.1E-24 134.7 8.5 83 30-112 3-87 (88)
75 3ns6_A Eukaryotic translation 99.8 3.9E-20 1.3E-24 140.1 7.3 82 28-109 3-92 (100)
76 2cqp_A RNA-binding protein 12; 99.8 7.5E-20 2.6E-24 137.3 8.7 82 28-109 12-94 (98)
77 2dgv_A HnRNP M, heterogeneous 99.8 2.2E-19 7.5E-24 133.1 11.0 82 28-111 5-87 (92)
78 1x4c_A Splicing factor, argini 99.8 4.1E-19 1.4E-23 136.1 12.8 81 27-114 11-97 (108)
79 2fc9_A NCL protein; structure 99.8 2.3E-19 7.8E-24 135.5 11.1 81 27-111 11-92 (101)
80 1iqt_A AUF1, heterogeneous nuc 99.8 3.1E-20 1.1E-24 132.6 5.9 75 33-107 1-75 (75)
81 2kn4_A Immunoglobulin G-bindin 99.8 2E-19 6.9E-24 146.3 11.5 89 26-114 65-154 (158)
82 2jwn_A Embryonic polyadenylate 99.8 2E-19 6.9E-24 140.7 10.7 83 29-111 34-116 (124)
83 2ek1_A RNA-binding protein 12; 99.8 3.7E-20 1.3E-24 138.0 6.0 81 29-109 13-94 (95)
84 2j76_E EIF-4B, EIF4B, eukaryot 99.8 7.5E-20 2.6E-24 138.4 7.7 84 26-110 14-98 (100)
85 3ulh_A THO complex subunit 4; 99.8 2.3E-19 8E-24 136.7 10.3 83 25-108 23-106 (107)
86 2cpi_A CCR4-NOT transcription 99.8 1.1E-19 3.8E-24 140.0 8.1 84 28-111 12-102 (111)
87 2dgw_A Probable RNA-binding pr 99.8 3.7E-19 1.3E-23 131.8 10.6 80 28-110 7-87 (91)
88 2dgx_A KIAA0430 protein; RRM d 99.8 2.3E-19 7.9E-24 134.7 9.5 79 29-110 7-90 (96)
89 1x4e_A RNA binding motif, sing 99.8 3.8E-20 1.3E-24 135.3 5.0 80 29-108 3-83 (85)
90 3q2s_C Cleavage and polyadenyl 99.8 2.1E-19 7.3E-24 155.9 10.5 81 30-110 67-150 (229)
91 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 5.5E-19 1.9E-23 140.5 11.6 82 26-107 58-140 (140)
92 2dnn_A RNA-binding protein 12; 99.8 2.2E-19 7.6E-24 138.6 8.8 80 28-109 13-92 (109)
93 2cq1_A PTB-like protein L; RRM 99.8 9.6E-19 3.3E-23 133.2 12.0 80 28-113 12-94 (101)
94 1rk8_A CG8781-PA, CG8781-PA pr 99.8 3.2E-19 1.1E-23 146.8 10.1 91 25-115 66-157 (165)
95 2xs2_A Deleted in azoospermia- 99.8 1.4E-19 4.8E-24 136.9 7.3 85 25-111 3-87 (102)
96 1fj7_A Nucleolin RBD1, protein 99.8 4.1E-20 1.4E-24 139.6 4.3 84 27-112 13-97 (101)
97 1wex_A Hypothetical protein (r 99.8 5.9E-19 2E-23 135.1 10.6 79 28-112 12-93 (104)
98 2kt5_A RNA and export factor-b 99.8 1.4E-18 4.7E-23 136.2 12.9 85 27-112 31-116 (124)
99 2hgm_A HNRPF protein, heteroge 99.8 1.4E-19 4.8E-24 143.3 7.1 82 27-110 38-121 (126)
100 1why_A Hypothetical protein ri 99.8 1.2E-18 4.1E-23 130.6 11.8 78 28-111 14-94 (97)
101 2dgu_A Heterogeneous nuclear r 99.8 9.7E-19 3.3E-23 132.7 11.3 80 28-115 8-88 (103)
102 2err_A Ataxin-2-binding protei 99.8 3.2E-19 1.1E-23 137.1 8.6 85 24-110 22-107 (109)
103 2ki2_A SS-DNA binding protein 99.8 7.8E-20 2.7E-24 135.1 4.7 79 32-111 2-81 (90)
104 2e5j_A Methenyltetrahydrofolat 99.8 1.2E-18 4.1E-23 130.7 10.7 81 26-111 14-95 (97)
105 2fc8_A NCL protein; structure 99.8 1.3E-18 4.5E-23 131.3 10.7 82 27-111 11-93 (102)
106 2ad9_A Polypyrimidine tract-bi 99.8 8.7E-19 3E-23 137.3 10.0 80 28-113 28-110 (119)
107 2hgl_A HNRPF protein, heteroge 99.8 4.5E-19 1.5E-23 142.2 8.4 83 27-110 40-125 (136)
108 2hgn_A Heterogeneous nuclear r 99.8 1.6E-19 5.6E-24 145.2 5.8 84 26-111 41-124 (139)
109 2hvz_A Splicing factor, argini 99.8 8.7E-19 3E-23 132.2 9.3 76 32-112 1-77 (101)
110 1x4d_A Matrin 3; structural ge 99.8 6.7E-19 2.3E-23 134.4 8.6 76 29-110 13-92 (102)
111 3r27_A HnRNP L, heterogeneous 99.8 7.2E-19 2.5E-23 133.6 8.6 81 25-111 15-98 (100)
112 2lmi_A GRSF-1, G-rich sequence 99.8 3.6E-19 1.2E-23 136.3 6.9 83 27-110 7-92 (107)
113 2cpx_A Hypothetical protein FL 99.8 5.4E-19 1.8E-23 136.4 7.8 89 26-114 20-109 (115)
114 1wf1_A RNA-binding protein RAL 99.8 2.5E-18 8.6E-23 131.9 11.0 77 27-111 23-101 (110)
115 2nlw_A Eukaryotic translation 99.8 1.6E-18 5.5E-23 132.2 9.5 81 27-109 11-99 (105)
116 2dnq_A RNA-binding protein 4B; 99.8 4.3E-18 1.5E-22 125.9 11.4 77 28-112 5-82 (90)
117 2ytc_A PRE-mRNA-splicing facto 99.8 3.4E-18 1.2E-22 124.8 10.7 78 25-108 6-85 (85)
118 1x4f_A Matrin 3; structural ge 99.8 1.4E-18 4.8E-23 134.7 9.0 78 28-111 22-103 (112)
119 2dha_A FLJ20171 protein; RRM d 99.8 6.7E-19 2.3E-23 138.8 7.1 83 28-111 20-106 (123)
120 2cpj_A Non-POU domain-containi 99.8 3.2E-18 1.1E-22 128.8 10.4 78 28-111 12-90 (99)
121 1l3k_A Heterogeneous nuclear r 99.8 2.7E-18 9.1E-23 143.0 10.9 87 25-111 7-93 (196)
122 2jvo_A Nucleolar protein 3; nu 99.8 1.7E-18 5.9E-23 133.0 8.8 83 22-112 22-105 (108)
123 2lcw_A RNA-binding protein FUS 99.6 5.5E-20 1.9E-24 142.5 0.0 85 27-111 3-96 (116)
124 1l3k_A Heterogeneous nuclear r 99.8 3.8E-18 1.3E-22 142.1 11.0 87 28-114 101-187 (196)
125 2krb_A Eukaryotic translation 99.8 1.7E-18 5.7E-23 125.7 7.5 73 31-105 1-81 (81)
126 2a3j_A U1 small nuclear ribonu 99.8 4E-18 1.4E-22 135.0 10.1 81 28-111 26-111 (127)
127 1x4g_A Nucleolysin TIAR; struc 99.7 6.1E-18 2.1E-22 129.5 10.1 79 27-111 21-100 (109)
128 4f02_A Polyadenylate-binding p 99.7 4.2E-18 1.4E-22 145.3 10.0 82 29-110 13-95 (213)
129 2wbr_A GW182, gawky, LD47780P; 99.7 2.3E-18 8E-23 127.4 7.2 72 31-108 7-79 (89)
130 3d2w_A TAR DNA-binding protein 99.7 4E-18 1.4E-22 126.5 8.3 79 27-111 7-85 (89)
131 2dnp_A RNA-binding protein 14; 99.7 8.3E-18 2.8E-22 124.3 9.9 77 27-111 5-82 (90)
132 2dgt_A RNA-binding protein 30; 99.7 9.3E-18 3.2E-22 124.5 10.1 77 27-111 6-83 (92)
133 2jvr_A Nucleolar protein 3; RN 99.7 2.5E-18 8.7E-23 133.1 7.1 79 28-110 25-105 (111)
134 2e5g_A U6 snRNA-specific termi 99.7 2E-17 6.7E-22 123.4 11.4 78 29-111 6-83 (94)
135 2dnl_A Cytoplasmic polyadenyla 99.7 4.7E-18 1.6E-22 131.5 8.2 80 29-110 6-88 (114)
136 1x5p_A Negative elongation fac 99.7 2.8E-17 9.6E-22 123.2 11.9 77 28-112 12-89 (97)
137 2la4_A Nuclear and cytoplasmic 99.7 4.4E-18 1.5E-22 128.4 7.4 76 28-109 24-100 (101)
138 1fjc_A Nucleolin RBD2, protein 99.7 5.2E-18 1.8E-22 126.7 7.7 81 26-111 11-92 (96)
139 2j8a_A Histone-lysine N-methyl 99.7 6.7E-18 2.3E-22 133.2 8.0 79 32-110 3-96 (136)
140 2f3j_A RNA and export factor b 99.7 8.2E-18 2.8E-22 140.4 9.0 81 29-110 86-167 (177)
141 3lqv_A PRE-mRNA branch site pr 99.7 9.6E-18 3.3E-22 129.4 8.7 79 29-110 6-85 (115)
142 3beg_B Splicing factor, argini 99.7 7.7E-18 2.6E-22 130.6 8.2 77 28-111 13-95 (115)
143 2cpd_A Apobec-1 stimulating pr 99.7 2.7E-17 9.4E-22 123.6 10.9 78 26-111 10-90 (99)
144 1nu4_A U1A RNA binding domain; 99.7 6.6E-18 2.3E-22 126.2 7.3 81 28-111 5-90 (97)
145 1wf0_A TDP-43, TAR DNA-binding 99.7 7.3E-18 2.5E-22 124.1 7.4 78 29-112 3-80 (88)
146 3pgw_S U1-70K; protein-RNA com 99.7 3.9E-17 1.3E-21 154.2 13.9 83 29-111 100-183 (437)
147 2cqh_A IGF-II mRNA-binding pro 99.7 8.5E-18 2.9E-22 124.9 7.4 77 29-112 6-85 (93)
148 2e44_A Insulin-like growth fac 99.7 2.5E-17 8.4E-22 123.0 9.4 78 29-110 13-92 (96)
149 3md3_A Nuclear and cytoplasmic 99.7 4.6E-17 1.6E-21 131.4 11.6 82 27-108 83-165 (166)
150 2i2y_A Fusion protein consists 99.7 2.9E-17 1E-21 132.7 10.2 81 25-110 67-148 (150)
151 2kvi_A Nuclear polyadenylated 99.7 1.7E-17 5.8E-22 124.3 8.2 76 28-111 7-84 (96)
152 2cjk_A Nuclear polyadenylated 99.7 1.3E-17 4.6E-22 135.3 7.6 81 30-110 86-166 (167)
153 2qfj_A FBP-interacting repress 99.7 6E-17 2.1E-21 136.8 11.9 83 29-111 123-206 (216)
154 2yh0_A Splicing factor U2AF 65 99.7 1.3E-16 4.4E-21 133.0 13.7 84 28-111 111-195 (198)
155 2xnq_A Nuclear polyadenylated 99.7 5E-17 1.7E-21 122.3 9.9 76 27-110 18-95 (97)
156 1fxl_A Paraneoplastic encephal 99.7 5.5E-17 1.9E-21 131.1 10.7 80 31-110 2-82 (167)
157 1sjr_A Polypyrimidine tract-bi 99.7 5.9E-17 2E-21 133.4 10.8 81 27-111 42-125 (164)
158 3egn_A RNA-binding protein 40; 99.7 3.1E-18 1.1E-22 137.4 3.0 87 28-114 42-134 (143)
159 1b7f_A Protein (SXL-lethal pro 99.7 4.4E-17 1.5E-21 132.2 9.8 82 30-111 2-84 (168)
160 1whx_A Hypothetical protein ri 99.7 2.7E-17 9.3E-22 126.8 7.9 77 28-110 7-84 (111)
161 2cjk_A Nuclear polyadenylated 99.7 3.7E-17 1.3E-21 132.7 8.2 79 30-109 2-80 (167)
162 4f02_A Polyadenylate-binding p 99.7 1.6E-17 5.3E-22 141.7 6.1 80 30-111 102-182 (213)
163 2g4b_A Splicing factor U2AF 65 99.7 1E-16 3.4E-21 130.8 10.5 80 29-108 92-172 (172)
164 1wg1_A KIAA1579 protein, homol 99.7 3.4E-17 1.2E-21 120.7 6.9 74 30-110 4-78 (88)
165 2voo_A Lupus LA protein; RNA-b 99.7 1.4E-16 4.8E-21 134.6 11.0 79 30-109 108-186 (193)
166 2e5i_A Heterogeneous nuclear r 99.7 6.1E-16 2.1E-20 121.9 13.8 78 28-111 22-103 (124)
167 2cq2_A Hypothetical protein LO 99.7 7.5E-17 2.6E-21 125.3 7.4 76 28-109 22-105 (114)
168 2qfj_A FBP-interacting repress 99.7 1.4E-16 4.8E-21 134.5 9.7 83 28-110 25-108 (216)
169 1b7f_A Protein (SXL-lethal pro 99.7 4.7E-16 1.6E-20 126.1 11.5 80 28-107 86-168 (168)
170 3md3_A Nuclear and cytoplasmic 99.7 2.5E-16 8.4E-21 127.2 9.2 79 32-111 1-80 (166)
171 2hzc_A Splicing factor U2AF 65 99.7 2.7E-16 9.4E-21 114.9 8.2 71 29-106 4-86 (87)
172 2bz2_A Negative elongation fac 99.6 3.4E-16 1.2E-20 122.7 8.8 77 27-111 35-112 (121)
173 3nmr_A Cugbp ELAV-like family 99.6 5.5E-16 1.9E-20 126.3 10.2 82 30-111 2-89 (175)
174 3pgw_A U1-A; protein-RNA compl 99.6 7E-16 2.4E-20 136.1 11.2 82 27-111 5-91 (282)
175 1fxl_A Paraneoplastic encephal 99.6 7.7E-16 2.6E-20 124.3 10.5 80 28-107 85-167 (167)
176 3tyt_A Heterogeneous nuclear r 99.6 4.1E-16 1.4E-20 132.8 9.1 76 30-110 3-80 (205)
177 3nmr_A Cugbp ELAV-like family 99.6 8.4E-16 2.9E-20 125.2 10.4 80 28-108 92-175 (175)
178 3zzy_A Polypyrimidine tract-bi 99.6 7.2E-16 2.5E-20 122.4 9.6 80 27-111 24-107 (130)
179 2diu_A KIAA0430 protein; struc 99.6 1.7E-15 5.7E-20 113.2 8.5 70 32-111 10-85 (96)
180 2pe8_A Splicing factor 45; RRM 99.6 3.5E-15 1.2E-19 114.2 9.8 81 29-109 6-93 (105)
181 3u1l_A PRE-mRNA-splicing facto 99.6 1.7E-15 5.7E-20 132.1 8.5 78 28-111 131-230 (240)
182 1fje_B Nucleolin RBD12, protei 99.6 2.5E-16 8.7E-21 129.0 2.8 84 27-111 9-92 (175)
183 2dit_A HIV TAT specific factor 99.6 1.3E-14 4.4E-19 111.7 11.3 80 28-111 12-103 (112)
184 1fje_B Nucleolin RBD12, protei 99.6 3.6E-15 1.2E-19 122.1 8.5 78 28-110 96-174 (175)
185 3pgw_A U1-A; protein-RNA compl 99.6 1.4E-14 4.9E-19 127.7 13.0 77 27-108 203-281 (282)
186 2ghp_A U4/U6 snRNA-associated 99.6 3.5E-15 1.2E-19 132.2 9.0 82 28-110 207-291 (292)
187 3smz_A Protein raver-1, ribonu 99.6 3E-15 1E-19 132.1 8.2 86 28-114 181-268 (284)
188 3smz_A Protein raver-1, ribonu 99.6 8.9E-15 3.1E-19 129.1 11.2 82 30-111 94-176 (284)
189 2adc_A Polypyrimidine tract-bi 99.6 7.3E-15 2.5E-19 126.4 10.3 78 28-110 31-110 (229)
190 2d9o_A DNAJ (HSP40) homolog, s 99.6 6.7E-14 2.3E-18 106.2 13.2 76 31-112 10-92 (100)
191 1qm9_A Polypyrimidine tract-bi 99.5 8.7E-15 3E-19 122.4 8.0 77 30-111 2-80 (198)
192 2g4b_A Splicing factor U2AF 65 99.5 2.5E-14 8.4E-19 116.4 9.1 75 30-110 3-88 (172)
193 3sde_A Paraspeckle component 1 99.5 1.8E-14 6.3E-19 126.4 8.9 82 30-112 95-181 (261)
194 2ghp_A U4/U6 snRNA-associated 99.5 2.2E-14 7.5E-19 127.1 9.4 82 24-107 34-115 (292)
195 3sde_A Paraspeckle component 1 99.5 3.4E-14 1.2E-18 124.7 9.8 77 27-109 18-95 (261)
196 2yh0_A Splicing factor U2AF 65 99.5 3.2E-14 1.1E-18 118.4 8.6 76 30-111 3-89 (198)
197 3tyt_A Heterogeneous nuclear r 99.5 1.8E-14 6.1E-19 122.6 6.1 77 29-107 121-204 (205)
198 1jmt_A Splicing factor U2AF 35 99.5 9.6E-15 3.3E-19 111.5 3.1 71 36-107 20-103 (104)
199 2adc_A Polypyrimidine tract-bi 99.5 1.1E-13 3.8E-18 119.0 10.0 76 29-109 149-227 (229)
200 1qm9_A Polypyrimidine tract-bi 99.5 6.5E-14 2.2E-18 117.0 7.8 76 29-109 118-196 (198)
201 3v4m_A Splicing factor U2AF 65 99.5 8.3E-14 2.8E-18 106.4 7.5 81 29-109 3-96 (105)
202 3ue2_A Poly(U)-binding-splicin 99.4 2.8E-13 9.5E-18 105.7 8.0 79 30-108 19-107 (118)
203 3tht_A Alkylated DNA repair pr 99.4 5.4E-13 1.8E-17 122.0 7.4 75 28-108 15-97 (345)
204 1owx_A Lupus LA protein, SS-B, 99.2 3E-11 1E-15 94.5 9.6 82 21-108 8-94 (121)
205 3s6e_A RNA-binding protein 39; 99.2 2E-11 7E-16 94.6 7.2 76 30-109 6-92 (114)
206 2dnr_A Synaptojanin-1; RRM dom 99.1 2.8E-10 9.6E-15 84.1 8.3 72 31-110 7-86 (91)
207 3dxb_A Thioredoxin N-terminall 98.9 3E-09 1E-13 90.7 8.4 66 43-108 141-211 (222)
208 1ufw_A Synaptojanin 2; RNP dom 98.8 2.5E-09 8.7E-14 79.5 5.1 71 30-108 14-93 (95)
209 2dhx_A Poly (ADP-ribose) polym 98.4 7.7E-06 2.6E-10 61.5 12.8 78 31-116 8-90 (104)
210 2l9w_A U4/U6 snRNA-associated- 98.3 1.5E-06 5.2E-11 66.0 7.0 74 28-107 18-97 (117)
211 1wey_A Calcipressin 1; structu 97.7 0.0002 6.7E-09 53.9 8.2 75 30-110 4-84 (104)
212 1wwh_A Nucleoporin 35, nucleop 97.6 0.00028 9.7E-09 54.4 8.0 74 27-107 20-94 (119)
213 1whv_A Poly(A)-specific ribonu 97.3 0.00092 3.1E-08 49.6 7.8 54 30-92 15-68 (100)
214 3ctr_A Poly(A)-specific ribonu 96.9 0.0013 4.4E-08 49.0 5.3 52 32-92 7-58 (101)
215 1uw4_A UPF3X; nonsense mediate 96.6 0.007 2.4E-07 44.4 7.5 65 32-96 2-69 (91)
216 3p3d_A Nucleoporin 53; structu 96.4 0.0039 1.3E-07 48.7 4.9 77 31-108 7-97 (132)
217 3pq1_A Poly(A) RNA polymerase; 96.3 0.0019 6.4E-08 61.0 2.9 58 30-93 52-109 (464)
218 2kn4_A Immunoglobulin G-bindin 95.8 0.008 2.7E-07 47.5 4.3 33 60-94 2-34 (158)
219 2i2y_A Fusion protein consists 94.3 0.02 7E-07 44.9 2.6 40 69-109 9-50 (150)
220 2l08_A Regulator of nonsense t 93.3 0.058 2E-06 39.9 3.2 64 31-94 9-74 (97)
221 3d45_A Poly(A)-specific ribonu 87.2 1.1 3.7E-05 42.5 6.8 55 30-93 439-493 (507)
222 2crl_A Copper chaperone for su 70.7 19 0.00064 25.4 7.4 57 31-94 20-77 (98)
223 4f25_A Polyadenylate-binding p 61.6 1.7 5.7E-05 32.1 0.0 20 28-47 94-113 (115)
224 2g0c_A ATP-dependent RNA helic 58.1 30 0.001 23.2 6.1 67 33-108 2-75 (76)
225 3fry_A Probable copper-exporti 52.1 28 0.00095 22.6 5.0 57 31-94 6-62 (73)
226 3ts2_A Protein LIN-28 homolog 38.4 5.6 0.00019 31.2 -0.4 56 46-109 2-70 (148)
227 3bgu_A Ferredoxin-like protein 37.0 96 0.0033 22.7 6.4 67 24-91 15-91 (116)
228 3lpe_A Putative transcription 32.8 1.1E+02 0.0039 21.4 6.0 33 57-94 39-71 (92)
229 3mfb_A Uncharacterized protein 32.0 63 0.0022 25.5 4.8 37 43-79 3-42 (157)
230 3fut_A Dimethyladenosine trans 31.5 69 0.0024 27.3 5.4 46 32-94 111-156 (271)
231 3bb5_A Stress responsive alpha 31.0 1.6E+02 0.0054 21.6 7.2 62 30-91 20-92 (121)
232 4eyt_A Telomerase associated p 30.9 1.5E+02 0.0051 21.3 7.3 71 29-107 10-88 (129)
233 2cu1_A Mitogen-activated prote 30.5 94 0.0032 22.7 5.1 65 38-110 23-88 (103)
234 4e8u_A Putative uncharacterize 29.7 1.6E+02 0.0056 23.5 6.9 57 33-92 14-82 (172)
235 2qyc_A Ferredoxin-like protein 28.2 1.6E+02 0.0053 20.7 6.6 55 36-91 10-74 (103)
236 2i9x_A Putative septation prot 28.1 76 0.0026 22.5 4.2 26 57-82 5-30 (87)
237 1xn9_A 30S ribosomal protein S 27.5 1.1E+02 0.0036 22.3 5.0 49 41-90 28-81 (101)
238 3uzu_A Ribosomal RNA small sub 27.3 31 0.0011 29.6 2.4 35 32-66 115-149 (279)
239 3swz_A Steroid 17-alpha-hydrox 27.3 94 0.0032 27.8 5.9 59 33-100 16-78 (494)
240 2g1d_A 30S ribosomal protein S 27.1 23 0.00078 25.8 1.3 47 41-88 29-80 (98)
241 1q8l_A Copper-transporting ATP 26.8 1.3E+02 0.0046 19.5 7.5 59 30-94 9-71 (84)
242 1ywx_A 30S ribosomal protein S 25.7 1.3E+02 0.0045 21.9 5.3 47 41-88 28-79 (102)
243 2v94_A RPS24, 30S ribosomal pr 24.6 1.2E+02 0.004 22.3 4.8 48 41-89 37-89 (107)
244 1i4w_A Mitochondrial replicati 24.3 77 0.0026 28.2 4.6 22 33-54 144-165 (353)
245 2gu3_A YPMB protein; APC1927, 24.3 75 0.0026 24.2 3.9 47 36-82 68-127 (136)
246 2ia9_A Putative septation prot 23.8 97 0.0033 22.5 4.2 26 57-82 5-30 (100)
247 2jrh_A Mitogen-activated prote 23.6 1.3E+02 0.0045 21.4 4.7 64 38-109 19-83 (94)
248 2cug_A Mkiaa0962 protein; DNAJ 23.3 42 0.0014 23.3 2.1 19 36-54 22-40 (88)
249 2i9z_A Putative septation prot 22.9 1.1E+02 0.0036 22.6 4.2 26 57-82 5-30 (105)
250 2lfv_A Protein DAMX; cell divi 28.5 18 0.00061 26.7 0.0 58 38-97 29-88 (106)
251 2npt_B Mitogen-activated prote 21.1 1.3E+02 0.0045 21.7 4.3 61 38-106 35-96 (100)
252 2c60_A Human mitogen-activated 21.0 1.1E+02 0.0038 22.4 3.9 62 38-107 46-108 (111)
253 1fme_A FSD-EY peptide; beta-BE 20.7 49 0.0017 17.8 1.5 12 44-55 14-25 (28)
254 2e5p_A Protein PHF1, PHD finge 20.5 49 0.0017 22.3 1.8 11 73-83 37-47 (68)
255 2exu_A Transcription initiatio 20.3 1.4E+02 0.0049 24.4 5.0 25 72-96 148-172 (200)
No 1
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=4.2e-22 Score=154.41 Aligned_cols=88 Identities=60% Similarity=1.043 Sum_probs=81.7
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeE
Q 024697 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRAN 103 (264)
Q Consensus 24 ~~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~ 103 (264)
.+..+...++|||+||+++++|++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++.+|+|++|+
T Consensus 10 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~ 89 (116)
T 2cqd_A 10 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKAN 89 (116)
T ss_dssp CCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEECE
T ss_pred CCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEEE
Confidence 34556788999999999999999999999999999999999999999999999999999999999999987799999999
Q ss_pred EEeccCCC
Q 024697 104 CNLASLGR 111 (264)
Q Consensus 104 V~~a~~~~ 111 (264)
|+++..+.
T Consensus 90 V~~a~~~~ 97 (116)
T 2cqd_A 90 VNLAYLGA 97 (116)
T ss_dssp EEESTTTC
T ss_pred EEEcccCC
Confidence 99997553
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=4.2e-22 Score=151.09 Aligned_cols=81 Identities=27% Similarity=0.387 Sum_probs=75.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCceeEEEec
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCNLA 107 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l~V~~a 107 (264)
.+.++|||+|||.++||++|+++|++||+|++|+|++|+.+|++||||||+|.+.++|++||+.+ +..|+|++|+|++|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 34679999999999999999999999999999999999999999999999999999999999985 46799999999999
Q ss_pred cC
Q 024697 108 SL 109 (264)
Q Consensus 108 ~~ 109 (264)
++
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 53
No 3
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.87 E-value=1.5e-21 Score=151.08 Aligned_cols=89 Identities=25% Similarity=0.325 Sum_probs=80.5
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCceeE
Q 024697 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRAN 103 (264)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l~ 103 (264)
.......++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.+ +..|+|++|+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 444566789999999999999999999999999999999999989999999999999999999999885 4669999999
Q ss_pred EEeccCCCCC
Q 024697 104 CNLASLGRPR 113 (264)
Q Consensus 104 V~~a~~~~~~ 113 (264)
|+++..+..+
T Consensus 99 V~~a~~~~~~ 108 (115)
T 2cpz_A 99 VQLKRSKNDS 108 (115)
T ss_dssp EECCCCSCCC
T ss_pred EEEcCCCCcC
Confidence 9999765543
No 4
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.86 E-value=7.4e-22 Score=156.75 Aligned_cols=96 Identities=25% Similarity=0.419 Sum_probs=83.0
Q ss_pred CCCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CC
Q 024697 17 SGFQYLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TP 95 (264)
Q Consensus 17 s~~~~~~~~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~ 95 (264)
.+.............++|||+||++++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.+ +.
T Consensus 32 ~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~ 111 (129)
T 2kxn_B 32 RGSRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGM 111 (129)
T ss_dssp ---CCCCCSSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 33333444555667899999999999999999999999999999999999999999999999999999999999984 56
Q ss_pred CcCCceeEEEeccCCCC
Q 024697 96 FIDGRRANCNLASLGRP 112 (264)
Q Consensus 96 ~i~Gr~l~V~~a~~~~~ 112 (264)
.|+|++|+|+++..+++
T Consensus 112 ~i~g~~l~V~~a~~~~p 128 (129)
T 2kxn_B 112 ELDGRRIRVDFSITKRP 128 (129)
T ss_dssp CSSSSCCEESCCSSSSC
T ss_pred EECCEEEEEEEecCCCC
Confidence 79999999999976654
No 5
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.86 E-value=4.5e-22 Score=153.83 Aligned_cols=85 Identities=16% Similarity=0.259 Sum_probs=78.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEec
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a 107 (264)
...++|||+||+++++|++|+++|++||.|++|+|++|+.|+++||||||+|++.++|++||+.+| ..|+|+.|+|++|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456899999999999999999999999999999999999999999999999999999999999855 6699999999999
Q ss_pred cCCCCC
Q 024697 108 SLGRPR 113 (264)
Q Consensus 108 ~~~~~~ 113 (264)
..++.+
T Consensus 84 ~~~~~~ 89 (110)
T 3s8s_A 84 IKGQQR 89 (110)
T ss_dssp STTHHH
T ss_pred CCCcHH
Confidence 655433
No 6
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.86 E-value=8.4e-21 Score=146.70 Aligned_cols=89 Identities=36% Similarity=0.556 Sum_probs=80.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEE
Q 024697 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (264)
Q Consensus 26 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V 104 (264)
.+....++|||+||++++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 89 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 89 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345678999999999999999999999999999999999999899999999999999999999998755 6699999999
Q ss_pred EeccCCCCCC
Q 024697 105 NLASLGRPRP 114 (264)
Q Consensus 105 ~~a~~~~~~~ 114 (264)
+++..+..+.
T Consensus 90 ~~a~~~~~~~ 99 (115)
T 2dgo_A 90 NWATRKPPAP 99 (115)
T ss_dssp EESSCCCCCS
T ss_pred EEccCCCCCC
Confidence 9998665543
No 7
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.86 E-value=1.6e-21 Score=150.17 Aligned_cols=89 Identities=35% Similarity=0.635 Sum_probs=77.7
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEE
Q 024697 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANC 104 (264)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V 104 (264)
.+.+...++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.++..|+|+.|+|
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V 98 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDP 98 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEE
Confidence 34456788999999999999999999999999999999999999999999999999999999999999887799999999
Q ss_pred EeccCCCCC
Q 024697 105 NLASLGRPR 113 (264)
Q Consensus 105 ~~a~~~~~~ 113 (264)
+++..+..+
T Consensus 99 ~~a~~~~~~ 107 (109)
T 2rs2_A 99 KVAFPRRAQ 107 (109)
T ss_dssp EECCCCCCC
T ss_pred EEccCCCCC
Confidence 999765543
No 8
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=5.1e-21 Score=144.08 Aligned_cols=86 Identities=28% Similarity=0.556 Sum_probs=78.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEEec
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLA 107 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~a 107 (264)
....++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.++..|+|+.|+|+++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45678999999999999999999999999999999999999999999999999999999999994456799999999999
Q ss_pred cCCCCC
Q 024697 108 SLGRPR 113 (264)
Q Consensus 108 ~~~~~~ 113 (264)
..+..+
T Consensus 87 ~~~~~~ 92 (99)
T 2dgs_A 87 EPRDSK 92 (99)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 765443
No 9
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.86 E-value=2.5e-21 Score=142.28 Aligned_cols=83 Identities=33% Similarity=0.721 Sum_probs=77.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEE
Q 024697 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANC 104 (264)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V 104 (264)
+..+...++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++..|+|+.|+|
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v 84 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDP 84 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEE
Confidence 34566789999999999999999999999999999999999999999999999999999999999998888899999999
Q ss_pred Eec
Q 024697 105 NLA 107 (264)
Q Consensus 105 ~~a 107 (264)
++|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 976
No 10
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=4.7e-21 Score=144.55 Aligned_cols=85 Identities=18% Similarity=0.362 Sum_probs=77.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEE
Q 024697 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (264)
Q Consensus 26 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V 104 (264)
......++|||+||+.++++++|+++|++||.|++|+|++|+ +++++|||||+|.+.++|++||+.++ ..|+|++|+|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345667899999999999999999999999999999999998 89999999999999999999998854 6699999999
Q ss_pred EeccCCC
Q 024697 105 NLASLGR 111 (264)
Q Consensus 105 ~~a~~~~ 111 (264)
.++..+.
T Consensus 91 ~~a~~~~ 97 (100)
T 2do4_A 91 AISNSGP 97 (100)
T ss_dssp EECCCCS
T ss_pred EECCCCC
Confidence 9996543
No 11
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.8e-21 Score=147.56 Aligned_cols=85 Identities=36% Similarity=0.656 Sum_probs=78.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEEec
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLA 107 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~a 107 (264)
+...++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.++..|+|+.|+|+++
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEEC
Confidence 44568999999999999999999999999999999999999999999999999999999999999557799999999999
Q ss_pred cCCCC
Q 024697 108 SLGRP 112 (264)
Q Consensus 108 ~~~~~ 112 (264)
..+..
T Consensus 104 ~~~~~ 108 (116)
T 1x4b_A 104 VAREE 108 (116)
T ss_dssp SSCCC
T ss_pred CCCcc
Confidence 76543
No 12
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.8e-21 Score=148.09 Aligned_cols=86 Identities=37% Similarity=0.747 Sum_probs=79.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEEe
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNL 106 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~ 106 (264)
.+...++|||+||++++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++..|+|+.|+|++
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999855669999999999
Q ss_pred ccCCCC
Q 024697 107 ASLGRP 112 (264)
Q Consensus 107 a~~~~~ 112 (264)
+..+..
T Consensus 92 a~~~~~ 97 (105)
T 2dh8_A 92 CTPRGM 97 (105)
T ss_dssp SCCSSC
T ss_pred ccCCCC
Confidence 975543
No 13
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.85 E-value=8.6e-22 Score=146.96 Aligned_cols=81 Identities=20% Similarity=0.333 Sum_probs=74.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CC-CcCCceeEEEec
Q 024697 31 YTKVFVGGLAWETQSETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TP-FIDGRRANCNLA 107 (264)
Q Consensus 31 ~~~lfVgnLp~~vte~~L~~~F~~fG-~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~-~i~Gr~l~V~~a 107 (264)
+++|||+|||.++||++|+++|++|| +|++|+|++|+.|+++||||||+|.+.++|++||+.+ +. .|+|++|+|++|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 8999999999999999999999999999999999885 44 599999999999
Q ss_pred cCCC
Q 024697 108 SLGR 111 (264)
Q Consensus 108 ~~~~ 111 (264)
.++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 7554
No 14
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=1.6e-20 Score=142.48 Aligned_cols=86 Identities=20% Similarity=0.374 Sum_probs=77.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEE
Q 024697 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCN 105 (264)
Q Consensus 26 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~ 105 (264)
..+...++|||+||++++++++|+++|++|| |++|+|++|+.+++++|||||+|.+.++|++||+.++..|+|++|+|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVD 88 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEE
Confidence 3455679999999999999999999999996 999999999999999999999999999999999435567999999999
Q ss_pred eccCCCC
Q 024697 106 LASLGRP 112 (264)
Q Consensus 106 ~a~~~~~ 112 (264)
++..+..
T Consensus 89 ~a~~~~~ 95 (103)
T 2dng_A 89 IAEGRKQ 95 (103)
T ss_dssp ECCCCCC
T ss_pred EecCCCC
Confidence 9975543
No 15
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=9.1e-21 Score=143.73 Aligned_cols=86 Identities=28% Similarity=0.371 Sum_probs=79.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEE
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~ 105 (264)
+....++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45567999999999999999999999999999999999999899999999999999999999999755 66999999999
Q ss_pred eccCCCC
Q 024697 106 LASLGRP 112 (264)
Q Consensus 106 ~a~~~~~ 112 (264)
++..+..
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9976543
No 16
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=7.1e-21 Score=144.33 Aligned_cols=88 Identities=25% Similarity=0.449 Sum_probs=80.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhC-CCCCcCCceeEE
Q 024697 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD-PTPFIDGRRANC 104 (264)
Q Consensus 26 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~-~~~~i~Gr~l~V 104 (264)
......++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+. ++..|+|+.|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 3456679999999999999999999999999999999999999999999999999999999999997 457799999999
Q ss_pred EeccCCCCC
Q 024697 105 NLASLGRPR 113 (264)
Q Consensus 105 ~~a~~~~~~ 113 (264)
+++..++.+
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2dnm_A 88 QVARYGRRD 96 (103)
T ss_dssp EECSSCCSC
T ss_pred EECCcCCCC
Confidence 999765443
No 17
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.84 E-value=1e-20 Score=150.95 Aligned_cols=87 Identities=28% Similarity=0.459 Sum_probs=79.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEE
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~ 105 (264)
.+...++|||+||+++++|++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++ ..|+|++|+|+
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45567899999999999999999999999999999999999999999999999999999999999855 56999999999
Q ss_pred eccCCCCC
Q 024697 106 LASLGRPR 113 (264)
Q Consensus 106 ~a~~~~~~ 113 (264)
++..+..+
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99766443
No 18
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=143.41 Aligned_cols=86 Identities=16% Similarity=0.384 Sum_probs=77.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCC-CCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEE
Q 024697 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNT-GRSKGYGFVTFREPEAARRACADPTPFIDGRRANC 104 (264)
Q Consensus 26 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~t-g~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V 104 (264)
..+...++|||+||++++++++|+++|++|| |++|+|++|+.+ ++++|||||+|.+.++|++||+.++..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRV 88 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEE
Confidence 3455679999999999999999999999999 999999999988 99999999999999999999933556799999999
Q ss_pred EeccCCCC
Q 024697 105 NLASLGRP 112 (264)
Q Consensus 105 ~~a~~~~~ 112 (264)
+++..+..
T Consensus 89 ~~a~~~~~ 96 (104)
T 1wi8_A 89 DVADQAQD 96 (104)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99976544
No 19
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.84 E-value=7.9e-21 Score=154.75 Aligned_cols=86 Identities=20% Similarity=0.253 Sum_probs=79.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEe
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~ 106 (264)
....++|||+||++++|+++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|++
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4567999999999999999999999999999999999999999999999999999999999999855 669999999999
Q ss_pred ccCCCCC
Q 024697 107 ASLGRPR 113 (264)
Q Consensus 107 a~~~~~~ 113 (264)
+.....+
T Consensus 116 a~~~~~~ 122 (156)
T 1h2v_Z 116 DAGFKEG 122 (156)
T ss_dssp ESCCCTT
T ss_pred CCCCCCc
Confidence 9765443
No 20
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.6e-20 Score=142.64 Aligned_cols=86 Identities=28% Similarity=0.366 Sum_probs=79.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEE
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~ 105 (264)
.....++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.++ ..|+|++|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 44567899999999999999999999999999999999999899999999999999999999999755 67999999999
Q ss_pred eccCCCC
Q 024697 106 LASLGRP 112 (264)
Q Consensus 106 ~a~~~~~ 112 (264)
++..++.
T Consensus 91 ~a~~~~~ 97 (105)
T 1x5u_A 91 KASAHNK 97 (105)
T ss_dssp ETTTTSC
T ss_pred ECCCCCc
Confidence 9976543
No 21
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2e-20 Score=141.85 Aligned_cols=87 Identities=34% Similarity=0.642 Sum_probs=79.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEE
Q 024697 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANC 104 (264)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V 104 (264)
+..+...++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+. .+.|+|++|+|
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v 87 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDC 87 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEE
Confidence 34456778999999999999999999999999999999999999999999999999999999999995 45799999999
Q ss_pred EeccCCCC
Q 024697 105 NLASLGRP 112 (264)
Q Consensus 105 ~~a~~~~~ 112 (264)
+++..+..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqg_A 88 KLPNSKQS 95 (103)
T ss_dssp ECCCTTCC
T ss_pred EecCCCCc
Confidence 99976543
No 22
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.3e-20 Score=144.55 Aligned_cols=88 Identities=27% Similarity=0.416 Sum_probs=79.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-------CCCcC
Q 024697 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-------TPFID 98 (264)
Q Consensus 26 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-------~~~i~ 98 (264)
......++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.+ +..|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 34566789999999999999999999999999999999999999999999999999999999999985 45599
Q ss_pred CceeEEEeccCCCCC
Q 024697 99 GRRANCNLASLGRPR 113 (264)
Q Consensus 99 Gr~l~V~~a~~~~~~ 113 (264)
|+.|+|+++..+..+
T Consensus 90 g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 90 GRQLKVDLAVTRDEA 104 (111)
T ss_dssp SCEEEEECCCCCCCC
T ss_pred CEEEEEEECCCCccC
Confidence 999999999765443
No 23
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.7e-20 Score=141.13 Aligned_cols=84 Identities=26% Similarity=0.455 Sum_probs=77.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEec
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a 107 (264)
...++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.++ ..|+|++|+|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 457899999999999999999999999999999999999899999999999999999999997755 5699999999999
Q ss_pred cCCCC
Q 024697 108 SLGRP 112 (264)
Q Consensus 108 ~~~~~ 112 (264)
..+..
T Consensus 86 ~~~~~ 90 (99)
T 1whw_A 86 TIKKE 90 (99)
T ss_dssp CCCST
T ss_pred CCCcc
Confidence 76544
No 24
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.84 E-value=1.5e-21 Score=147.16 Aligned_cols=84 Identities=17% Similarity=0.280 Sum_probs=75.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCC--EEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCC-----CcC
Q 024697 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGE--ILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTP-----FID 98 (264)
Q Consensus 26 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~--I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~-----~i~ 98 (264)
.....-.+|||+||++++||++|+++|++||. |.+|+|++|+.|+++||||||+|.+.++|++||+.++. .|+
T Consensus 4 ~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~ 83 (95)
T 2lkz_A 4 HHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID 83 (95)
T ss_dssp CSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET
T ss_pred ccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC
Confidence 34566789999999999999999999999995 67999999999999999999999999999999998542 399
Q ss_pred CceeEEEeccC
Q 024697 99 GRRANCNLASL 109 (264)
Q Consensus 99 Gr~l~V~~a~~ 109 (264)
||+|.|++|+.
T Consensus 84 Gr~i~V~~Aks 94 (95)
T 2lkz_A 84 GKTIGVDFAKS 94 (95)
T ss_dssp TEEEEEEECCC
T ss_pred CEEEEEEEccC
Confidence 99999999953
No 25
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.3e-20 Score=139.15 Aligned_cols=83 Identities=35% Similarity=0.598 Sum_probs=77.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhC-CCCCcCCceeEEEec
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD-PTPFIDGRRANCNLA 107 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~-~~~~i~Gr~l~V~~a 107 (264)
...++|||+||+.++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+. ++..|+|++|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 3568999999999999999999999999999999999999999999999999999999999997 457799999999999
Q ss_pred cCCC
Q 024697 108 SLGR 111 (264)
Q Consensus 108 ~~~~ 111 (264)
..+.
T Consensus 83 ~~~~ 86 (95)
T 2dnz_A 83 TERL 86 (95)
T ss_dssp SCCC
T ss_pred cccc
Confidence 6554
No 26
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5.8e-21 Score=144.41 Aligned_cols=86 Identities=31% Similarity=0.443 Sum_probs=78.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEe
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~ 106 (264)
....++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.++ ..|+|++|+|++
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 3467899999999999999999999999999999999999999999999999999999999998854 669999999999
Q ss_pred ccCCCCC
Q 024697 107 ASLGRPR 113 (264)
Q Consensus 107 a~~~~~~ 113 (264)
+..++.+
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9765543
No 27
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.84 E-value=7.4e-21 Score=150.89 Aligned_cols=88 Identities=17% Similarity=0.274 Sum_probs=79.0
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEE--EEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-C----Cc
Q 024697 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE--AVVITDKNTGRSKGYGFVTFREPEAARRACADPT-P----FI 97 (264)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~--v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~----~i 97 (264)
+..+...++|||+||++++||++|+++|++||.|++ |+|++|+.|+++||||||+|.+. +|++||+.++ . .|
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 444567789999999999999999999999999977 99999999999999999999999 9999999854 6 89
Q ss_pred CCceeEEEeccCCCCC
Q 024697 98 DGRRANCNLASLGRPR 113 (264)
Q Consensus 98 ~Gr~l~V~~a~~~~~~ 113 (264)
+|++|+|+++..++.+
T Consensus 96 ~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 96 DGKTINVEFAKGSKRD 111 (131)
T ss_dssp GGCCCCCEECCCSCCC
T ss_pred CCEEEEEEECCCCCCC
Confidence 9999999999765443
No 28
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.6e-20 Score=141.91 Aligned_cols=84 Identities=20% Similarity=0.353 Sum_probs=74.2
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeE
Q 024697 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (264)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~ 103 (264)
...+...++|||+||+.++++++|+++|++||.|++|+|..+ ++++|||||+|++.++|++||+.++ ..|+|+.|+
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLR 92 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 344557789999999999999999999999999999999665 5689999999999999999998754 679999999
Q ss_pred EEeccCCC
Q 024697 104 CNLASLGR 111 (264)
Q Consensus 104 V~~a~~~~ 111 (264)
|+++..++
T Consensus 93 V~~a~~~~ 100 (109)
T 1x4a_A 93 VEFPRSGR 100 (109)
T ss_dssp EECCCCCC
T ss_pred EEEcccCC
Confidence 99996554
No 29
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.84 E-value=1.3e-20 Score=146.24 Aligned_cols=84 Identities=26% Similarity=0.392 Sum_probs=77.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeE
Q 024697 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (264)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~ 103 (264)
..++...++|||+||++++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++ ..|+|++|+
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 113 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLK 113 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3456678999999999999999999999999999999999999899999999999999999999999855 669999999
Q ss_pred EEecc
Q 024697 104 CNLAS 108 (264)
Q Consensus 104 V~~a~ 108 (264)
|++++
T Consensus 114 V~~ak 118 (118)
T 2khc_A 114 VQLKK 118 (118)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99873
No 30
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.5e-21 Score=150.12 Aligned_cols=88 Identities=18% Similarity=0.333 Sum_probs=77.6
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeE
Q 024697 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRAN 103 (264)
Q Consensus 24 ~~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~ 103 (264)
+.......++|||+||++++|+++|+++|+.||.|+++.++.+..+++++|||||+|.+.++|++||+.++..|+|+.|+
T Consensus 18 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~ 97 (124)
T 1wel_A 18 SRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQ 97 (124)
T ss_dssp CSSCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBE
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEE
Confidence 33445667899999999999999999999999999997777777799999999999999999999999444679999999
Q ss_pred EEeccCCC
Q 024697 104 CNLASLGR 111 (264)
Q Consensus 104 V~~a~~~~ 111 (264)
|.++..++
T Consensus 98 V~~a~~~~ 105 (124)
T 1wel_A 98 VHPITKKG 105 (124)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99996543
No 31
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=3.7e-20 Score=140.33 Aligned_cols=87 Identities=30% Similarity=0.486 Sum_probs=78.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCceeEE
Q 024697 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANC 104 (264)
Q Consensus 26 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l~V 104 (264)
..+...++|||+||++++++++|+++|++||.|++|+|+++ +++++|||||+|.+.++|++||+.+ +..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 87 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34557899999999999999999999999999999999998 7999999999999999999999984 56799999999
Q ss_pred EeccCCCCCC
Q 024697 105 NLASLGRPRP 114 (264)
Q Consensus 105 ~~a~~~~~~~ 114 (264)
+++..+..+.
T Consensus 88 ~~a~~~~~~~ 97 (103)
T 2d9p_A 88 ALAQRKEERQ 97 (103)
T ss_dssp EECSSCCCCC
T ss_pred EEecccccCC
Confidence 9997665443
No 32
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2.5e-20 Score=142.00 Aligned_cols=88 Identities=24% Similarity=0.413 Sum_probs=80.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeec-CCCCCccceEEEEeCCHHHHHHHHhCC-C-CCcCCcee
Q 024697 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITD-KNTGRSKGYGFVTFREPEAARRACADP-T-PFIDGRRA 102 (264)
Q Consensus 26 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d-~~tg~skG~gFV~F~~~e~A~~Ai~~~-~-~~i~Gr~l 102 (264)
..+...++|||+||++++++++|+++|++||.|++|+|+++ +.+++++|||||+|.+.++|++||+.+ + ..|+|+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l 89 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRL 89 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBC
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEE
Confidence 34567899999999999999999999999999999999999 788999999999999999999999986 4 67999999
Q ss_pred EEEeccCCCCC
Q 024697 103 NCNLASLGRPR 113 (264)
Q Consensus 103 ~V~~a~~~~~~ 113 (264)
+|+++..+...
T Consensus 90 ~v~~a~~~~~~ 100 (107)
T 2cph_A 90 VLEWADSEVTV 100 (107)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeCCCCCCC
Confidence 99999765443
No 33
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=7.2e-21 Score=146.99 Aligned_cols=86 Identities=21% Similarity=0.295 Sum_probs=77.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEE
Q 024697 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCN 105 (264)
Q Consensus 26 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~ 105 (264)
..+...++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.++..|+|+.|+|+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 20 PEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQ 99 (114)
T ss_dssp TTHHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEE
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999335567999999999
Q ss_pred eccCCC
Q 024697 106 LASLGR 111 (264)
Q Consensus 106 ~a~~~~ 111 (264)
++..+.
T Consensus 100 ~a~~~~ 105 (114)
T 2cq4_A 100 ASQAEK 105 (114)
T ss_dssp EHHHHH
T ss_pred ecCCCc
Confidence 996543
No 34
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.8e-20 Score=140.01 Aligned_cols=85 Identities=26% Similarity=0.454 Sum_probs=77.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEE-EEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEe
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEA-VVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v-~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~ 106 (264)
...++|||+||+.++++++|+++|++||.|++| +|++|+.+++++|||||+|.+.++|++||+.++ ..|+|++|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356899999999999999999999999999999 999998899999999999999999999999865 569999999999
Q ss_pred ccCCCCC
Q 024697 107 ASLGRPR 113 (264)
Q Consensus 107 a~~~~~~ 113 (264)
+..+..+
T Consensus 83 a~~~~~~ 89 (96)
T 1x5t_A 83 AFKKDSK 89 (96)
T ss_dssp SCCCCCC
T ss_pred ecccCCC
Confidence 9765443
No 35
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.83 E-value=1.8e-20 Score=142.63 Aligned_cols=86 Identities=28% Similarity=0.417 Sum_probs=78.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCc---CCcee
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFI---DGRRA 102 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i---~Gr~l 102 (264)
.+...++|||+||+.++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.++ ..+ +|++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 45677999999999999999999999999999999999999999999999999999999999999855 555 88999
Q ss_pred EEEeccCCCC
Q 024697 103 NCNLASLGRP 112 (264)
Q Consensus 103 ~V~~a~~~~~ 112 (264)
+|+++..+..
T Consensus 89 ~v~~a~~~~~ 98 (106)
T 2dgp_A 89 QVKPADSESR 98 (106)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCcccc
Confidence 9999976543
No 36
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.83 E-value=1.3e-20 Score=146.23 Aligned_cols=83 Identities=29% Similarity=0.463 Sum_probs=73.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCceeEEEecc
Q 024697 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCNLAS 108 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l~V~~a~ 108 (264)
..++|||+||++++||++|+++|++||.|++|+|++|+ +++||||||+|.+.++|++||+.+ +..|+|++|+|+++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35689999999999999999999999999999999995 568999999999999999999885 467999999999997
Q ss_pred CCCCCC
Q 024697 109 LGRPRP 114 (264)
Q Consensus 109 ~~~~~~ 114 (264)
.+..+.
T Consensus 82 ~~~~~~ 87 (115)
T 4f25_A 82 SRKERE 87 (115)
T ss_dssp CCCC--
T ss_pred Cccccc
Confidence 655443
No 37
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.83 E-value=3.2e-20 Score=144.45 Aligned_cols=84 Identities=30% Similarity=0.539 Sum_probs=77.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEe
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~ 106 (264)
....++|||+||+.++++++|+++|++||.|++|+|++|+ +++++|||||+|.+.++|++||+.++ ..|+|+.|+|++
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999998 89999999999999999999999755 679999999999
Q ss_pred ccCCCC
Q 024697 107 ASLGRP 112 (264)
Q Consensus 107 a~~~~~ 112 (264)
+..+..
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 975543
No 38
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.6e-21 Score=149.14 Aligned_cols=84 Identities=15% Similarity=0.263 Sum_probs=77.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCE-EEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEE
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEI-LEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCN 105 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I-~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~ 105 (264)
.+...++|||+||++++|+++|+++|+.||.| .+|+|++|+ +++++|||||+|.+.++|++||+.++..|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEE
Confidence 34567899999999999999999999999999 899999998 8999999999999999999999995567999999999
Q ss_pred eccCCC
Q 024697 106 LASLGR 111 (264)
Q Consensus 106 ~a~~~~ 111 (264)
++..+.
T Consensus 90 ~a~~~~ 95 (114)
T 2cpy_A 90 VVTLED 95 (114)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997654
No 39
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.4e-20 Score=141.04 Aligned_cols=85 Identities=34% Similarity=0.641 Sum_probs=78.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCceeEEEe
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCNL 106 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l~V~~ 106 (264)
..+.++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+ +..|+|++|+|++
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345789999999999999999999999999999999999999999999999999999999999884 5679999999999
Q ss_pred ccCCCC
Q 024697 107 ASLGRP 112 (264)
Q Consensus 107 a~~~~~ 112 (264)
+..+..
T Consensus 89 a~~~~~ 94 (102)
T 1x5s_A 89 AGKSSD 94 (102)
T ss_dssp EECCCC
T ss_pred CCCCCC
Confidence 976543
No 40
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=2.8e-20 Score=138.44 Aligned_cols=81 Identities=22% Similarity=0.479 Sum_probs=75.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEe
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~ 106 (264)
....++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|++|+|++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 4567899999999999999999999999999999999999999999999999999999999998755 669999999999
Q ss_pred cc
Q 024697 107 AS 108 (264)
Q Consensus 107 a~ 108 (264)
|+
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 83
No 41
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.7e-20 Score=141.69 Aligned_cols=86 Identities=22% Similarity=0.290 Sum_probs=79.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhC-CCCCcCCceeEE
Q 024697 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD-PTPFIDGRRANC 104 (264)
Q Consensus 26 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~-~~~~i~Gr~l~V 104 (264)
......++|||+||+.++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+. ++..|+|+.|+|
T Consensus 18 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 97 (106)
T 1p27_B 18 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISV 97 (106)
T ss_dssp CCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 3445678999999999999999999999999999999999999999999999999999999999997 557799999999
Q ss_pred EeccCCC
Q 024697 105 NLASLGR 111 (264)
Q Consensus 105 ~~a~~~~ 111 (264)
+++..+.
T Consensus 98 ~~a~~~~ 104 (106)
T 1p27_B 98 DWCFVRG 104 (106)
T ss_dssp EESEESS
T ss_pred EeecCCC
Confidence 9997654
No 42
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.83 E-value=7.1e-20 Score=139.12 Aligned_cols=86 Identities=27% Similarity=0.325 Sum_probs=77.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCC---ceeE
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDG---RRAN 103 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~G---r~l~ 103 (264)
....++|||+||+.++++++|+++|++||.|++|+|++|+ +++++|||||+|.+.++|++||+.++ ..|.| +.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3457899999999999999999999999999999999998 79999999999999999999999854 56777 9999
Q ss_pred EEeccCCCCCC
Q 024697 104 CNLASLGRPRP 114 (264)
Q Consensus 104 V~~a~~~~~~~ 114 (264)
|+++..+..+.
T Consensus 91 V~~a~~~~~~~ 101 (105)
T 2dnh_A 91 VKFADTDKESG 101 (105)
T ss_dssp EEESCSSCCCS
T ss_pred EEECccCcccC
Confidence 99997665443
No 43
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.83 E-value=3.2e-20 Score=134.85 Aligned_cols=79 Identities=34% Similarity=0.519 Sum_probs=74.6
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCceeEEEeccCC
Q 024697 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCNLASLG 110 (264)
Q Consensus 32 ~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l~V~~a~~~ 110 (264)
++|||+|||.++++++|+++|++||.|.++++++++.+++++|||||+|.+.++|++||+.+ +..|+|++|+|+++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999999989999999999999999999999984 56799999999999654
No 44
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.83 E-value=2.1e-20 Score=137.04 Aligned_cols=81 Identities=36% Similarity=0.539 Sum_probs=74.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCceeEEEec
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCNLA 107 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l~V~~a 107 (264)
...++|||+||+.++++++|+++|++||.|++|++++++.+++++|||||+|.+.++|++||+.+ +..|+|++|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45689999999999999999999999999999999999989999999999999999999999984 56799999999999
Q ss_pred cC
Q 024697 108 SL 109 (264)
Q Consensus 108 ~~ 109 (264)
..
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 64
No 45
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=1.3e-19 Score=139.70 Aligned_cols=86 Identities=23% Similarity=0.378 Sum_probs=77.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCceeEEE
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCN 105 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l~V~ 105 (264)
.....++|||+||++++++++|+++|++||.|++|+|++|+ +++++|||||+|.+.++|++||+.+ +..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 34567899999999999999999999999999999999998 5999999999999999999999974 467999999999
Q ss_pred eccCCCCC
Q 024697 106 LASLGRPR 113 (264)
Q Consensus 106 ~a~~~~~~ 113 (264)
++.....+
T Consensus 90 ~a~~~~~~ 97 (114)
T 2do0_A 90 MDERALPK 97 (114)
T ss_dssp ECSCCCCC
T ss_pred EcccCCCC
Confidence 99755443
No 46
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=3.4e-20 Score=140.67 Aligned_cols=85 Identities=25% Similarity=0.418 Sum_probs=77.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhc-CCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CC-cCCceeEE
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQ-FGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PF-IDGRRANC 104 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~-fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~-i~Gr~l~V 104 (264)
....++|||+||++++|+++|+++|++ ||.|++|+|++|+ +++++|||||+|.+.++|++||+.++ .. |+|++|+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 446689999999999999999999999 9999999999999 89999999999999999999999754 67 99999999
Q ss_pred EeccCCCCC
Q 024697 105 NLASLGRPR 113 (264)
Q Consensus 105 ~~a~~~~~~ 113 (264)
+++..+..+
T Consensus 85 ~~a~~~~~~ 93 (104)
T 2dhg_A 85 SVAIPKASR 93 (104)
T ss_dssp CBCCCCCSC
T ss_pred EEccCCCcC
Confidence 999765443
No 47
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.83 E-value=4e-21 Score=142.53 Aligned_cols=80 Identities=19% Similarity=0.384 Sum_probs=70.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCC--CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 024697 32 TKVFVGGLAWETQSETMRRYFEQFG--EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (264)
Q Consensus 32 ~~lfVgnLp~~vte~~L~~~F~~fG--~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a~ 108 (264)
.+|||+||+++++|++|+++|++|| .|++|+|++|+.+|++||||||+|.+.++|++||+.++ ..|+|++|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999998755 67999999999997
Q ss_pred CCC
Q 024697 109 LGR 111 (264)
Q Consensus 109 ~~~ 111 (264)
...
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 554
No 48
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.1e-20 Score=138.94 Aligned_cols=83 Identities=23% Similarity=0.268 Sum_probs=75.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEE-EEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEEe
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILE-AVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNL 106 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~-v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~ 106 (264)
....++|||+||+++++|++|+++|++||.|.+ |+|++| .+++++|||||+|.+.++|++||+.++..|+|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEE
Confidence 456789999999999999999999999999998 888888 689999999999999999999999966779999999999
Q ss_pred ccCCC
Q 024697 107 ASLGR 111 (264)
Q Consensus 107 a~~~~ 111 (264)
+..++
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 86543
No 49
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=4.3e-20 Score=138.88 Aligned_cols=82 Identities=22% Similarity=0.350 Sum_probs=76.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEE-EEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCce----e
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEIL-EAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRR----A 102 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~-~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~----l 102 (264)
...++|||+||++++++++|+++|++||.|+ +|+|++|+.+++++|||||+|.+.++|++||+.++ ..|+|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4578999999999999999999999999999 99999999999999999999999999999999865 5699999 9
Q ss_pred EEEeccCC
Q 024697 103 NCNLASLG 110 (264)
Q Consensus 103 ~V~~a~~~ 110 (264)
+|++|...
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 99999644
No 50
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.9e-20 Score=137.77 Aligned_cols=83 Identities=27% Similarity=0.414 Sum_probs=77.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEE
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~ 105 (264)
.....++|||+||+.++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.++ ..|+|++|+|+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999854 66999999999
Q ss_pred eccC
Q 024697 106 LASL 109 (264)
Q Consensus 106 ~a~~ 109 (264)
+++.
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9854
No 51
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3.5e-20 Score=139.09 Aligned_cols=84 Identities=25% Similarity=0.482 Sum_probs=76.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCC---CCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEE
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKN---TGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~---tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V 104 (264)
...++|||+||++++++++|+++|++||.|++|+|++++. |++++|||||+|.+.++|++||+.++ ..|+|++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3568999999999999999999999999999999999886 66999999999999999999999855 6699999999
Q ss_pred EeccCCCC
Q 024697 105 NLASLGRP 112 (264)
Q Consensus 105 ~~a~~~~~ 112 (264)
+++..+..
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99976543
No 52
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.82 E-value=1.9e-20 Score=149.62 Aligned_cols=91 Identities=30% Similarity=0.535 Sum_probs=82.2
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCcee
Q 024697 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRA 102 (264)
Q Consensus 24 ~~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l 102 (264)
.+......++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.++ ..|+|++|
T Consensus 40 ~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 119 (135)
T 2lea_A 40 PPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 119 (135)
T ss_dssp SCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34556678899999999999999999999999999999999999899999999999999999999999855 66999999
Q ss_pred EEEeccCCCCCC
Q 024697 103 NCNLASLGRPRP 114 (264)
Q Consensus 103 ~V~~a~~~~~~~ 114 (264)
+|+++..++++.
T Consensus 120 ~V~~a~~~~~~~ 131 (135)
T 2lea_A 120 RVQMARYGRPPD 131 (135)
T ss_dssp EEEECCCCCCCT
T ss_pred EEEECCCCCCCc
Confidence 999997665443
No 53
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8e-20 Score=138.47 Aligned_cols=86 Identities=24% Similarity=0.318 Sum_probs=76.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEE
Q 024697 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (264)
Q Consensus 26 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V 104 (264)
..+...++|||+||++++++++|+++|++||.|++|+|++|+. .++|||||+|.+.++|++||+.++ ..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 3456779999999999999999999999999999999999964 479999999999999999999754 6699999999
Q ss_pred EeccCCCCC
Q 024697 105 NLASLGRPR 113 (264)
Q Consensus 105 ~~a~~~~~~ 113 (264)
+++..+..+
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cqi_A 88 NWATTPSSQ 96 (103)
T ss_dssp EECCCTTCC
T ss_pred EECCCCccc
Confidence 999765443
No 54
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.82 E-value=9.5e-20 Score=140.02 Aligned_cols=89 Identities=31% Similarity=0.533 Sum_probs=81.3
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhC-CCCCcCCc
Q 024697 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD-PTPFIDGR 100 (264)
Q Consensus 22 ~~~~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~-~~~~i~Gr 100 (264)
.+.+......++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+. ++..|+|+
T Consensus 17 ~~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~ 96 (108)
T 2jrs_A 17 NNLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 96 (108)
T ss_dssp CSSCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred cccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 44566677889999999999999999999999999999999999999999999999999999999999987 45679999
Q ss_pred eeEEEeccCC
Q 024697 101 RANCNLASLG 110 (264)
Q Consensus 101 ~l~V~~a~~~ 110 (264)
+|+|+++..+
T Consensus 97 ~l~V~~a~~k 106 (108)
T 2jrs_A 97 PMKVGHVTER 106 (108)
T ss_dssp CCEEECSCSS
T ss_pred EEEEEEcccC
Confidence 9999999654
No 55
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.82 E-value=3.2e-20 Score=142.28 Aligned_cols=88 Identities=25% Similarity=0.326 Sum_probs=79.9
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCceeE
Q 024697 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRAN 103 (264)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l~ 103 (264)
+......++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+ +..|+|+.|+
T Consensus 20 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 99 (110)
T 1oo0_B 20 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 99 (110)
T ss_dssp BCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 344566789999999999999999999999999999999999999999999999999999999999974 4669999999
Q ss_pred EEeccCCCC
Q 024697 104 CNLASLGRP 112 (264)
Q Consensus 104 V~~a~~~~~ 112 (264)
|+++..+..
T Consensus 100 V~~a~~~~~ 108 (110)
T 1oo0_B 100 VDWCFVKGP 108 (110)
T ss_dssp EEESEESSC
T ss_pred EEEcccCCC
Confidence 999976544
No 56
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.82 E-value=6.7e-20 Score=138.03 Aligned_cols=83 Identities=28% Similarity=0.426 Sum_probs=76.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEE--------EEEeecCCCCCccceEEEEeCCHHHHHHHHhC-CCCC
Q 024697 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE--------AVVITDKNTGRSKGYGFVTFREPEAARRACAD-PTPF 96 (264)
Q Consensus 26 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~--------v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~-~~~~ 96 (264)
......++|||+||+.++++++|+++|++||.|++ |+|++|+.+++++|||||+|.+.++|++||+. ++..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34556789999999999999999999999999999 99999999999999999999999999999997 4567
Q ss_pred cCCceeEEEecc
Q 024697 97 IDGRRANCNLAS 108 (264)
Q Consensus 97 i~Gr~l~V~~a~ 108 (264)
|+|++|+|++|+
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999973
No 57
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.82 E-value=6.5e-20 Score=134.98 Aligned_cols=81 Identities=20% Similarity=0.442 Sum_probs=75.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEEeccC
Q 024697 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLASL 109 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~a~~ 109 (264)
+.++|||+||+.++++++|+++|++||.|++|++++|+.+++++|||||+|.+.++|++||+.++..|+|+.|+|++++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccC
Confidence 46899999999999999999999999999999999999899999999999999999999994355779999999999965
Q ss_pred C
Q 024697 110 G 110 (264)
Q Consensus 110 ~ 110 (264)
+
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 58
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.82 E-value=4.2e-20 Score=137.75 Aligned_cols=84 Identities=30% Similarity=0.453 Sum_probs=75.7
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhC-CCCCcCCceeE
Q 024697 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD-PTPFIDGRRAN 103 (264)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~-~~~~i~Gr~l~ 103 (264)
+..+...++|||+||++++++++|+++|++||.|++|+|++|+. ++++|||||+|.+.++|++||+. ++..|+|++|+
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPIN 88 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEE
Confidence 33456779999999999999999999999999999999999985 99999999999999999999997 45679999999
Q ss_pred EEeccC
Q 024697 104 CNLASL 109 (264)
Q Consensus 104 V~~a~~ 109 (264)
|++++.
T Consensus 89 V~~a~~ 94 (95)
T 2ywk_A 89 VSGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EEEcCC
Confidence 999853
No 59
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5e-20 Score=141.88 Aligned_cols=88 Identities=25% Similarity=0.394 Sum_probs=79.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEE--------EEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CC
Q 024697 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEIL--------EAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TP 95 (264)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~--------~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~ 95 (264)
+..+...++|||+||++++++++|+++|++||.|+ +|+|++|+.+++++|||||+|.+.++|++||+.+ +.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 34566789999999999999999999999999999 6999999889999999999999999999999984 46
Q ss_pred CcCCceeEEEeccCCCC
Q 024697 96 FIDGRRANCNLASLGRP 112 (264)
Q Consensus 96 ~i~Gr~l~V~~a~~~~~ 112 (264)
.|+|+.|+|+++..+..
T Consensus 89 ~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKPP 105 (113)
T ss_dssp EETTEECEEECSSCCCC
T ss_pred ccCCCEEEEEECCCCCC
Confidence 79999999999976543
No 60
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.82 E-value=4.5e-20 Score=134.70 Aligned_cols=81 Identities=32% Similarity=0.478 Sum_probs=75.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhC-CCCCcCCceeEEEe
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD-PTPFIDGRRANCNL 106 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~-~~~~i~Gr~l~V~~ 106 (264)
....++|||+||+.++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+. ++..|+|++|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999999999988999999999999999999999987 45679999999999
Q ss_pred cc
Q 024697 107 AS 108 (264)
Q Consensus 107 a~ 108 (264)
|+
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 83
No 61
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.3e-20 Score=140.57 Aligned_cols=82 Identities=17% Similarity=0.260 Sum_probs=75.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEEe
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNL 106 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~ 106 (264)
.+...++|||+|||+++|+++|+++|++||.|++|+|++|+. +++||||||+|.+.++|++||+.++..|+|+.|.|.+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILF 85 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEE
Confidence 355678999999999999999999999999999999999987 9999999999999999999999655779999999998
Q ss_pred ccC
Q 024697 107 ASL 109 (264)
Q Consensus 107 a~~ 109 (264)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 754
No 62
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.82 E-value=5.3e-20 Score=144.41 Aligned_cols=90 Identities=23% Similarity=0.328 Sum_probs=81.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhC-CCCCcCCceeE
Q 024697 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD-PTPFIDGRRAN 103 (264)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~-~~~~i~Gr~l~ 103 (264)
+......++|||+||++++++++|+++|++||.|++|+|+.|+.+++++|||||+|.+.++|++||+. ++..|+|+.|+
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 34456678999999999999999999999999999999999999999999999999999999999987 45779999999
Q ss_pred EEeccCCCCCC
Q 024697 104 CNLASLGRPRP 114 (264)
Q Consensus 104 V~~a~~~~~~~ 114 (264)
|+++..+..++
T Consensus 96 v~~a~~~~~~~ 106 (126)
T 3ex7_B 96 VDWCFVRGPPK 106 (126)
T ss_dssp EEESEESSSCC
T ss_pred EEEecCCCCCC
Confidence 99997665443
No 63
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-19 Score=138.81 Aligned_cols=84 Identities=18% Similarity=0.300 Sum_probs=76.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCC-EEEEEEe-ecCCCCCccceEEEEeCCHHHHHHHHhCCC---CCcCCceeEE
Q 024697 30 TYTKVFVGGLAWETQSETMRRYFEQFGE-ILEAVVI-TDKNTGRSKGYGFVTFREPEAARRACADPT---PFIDGRRANC 104 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte~~L~~~F~~fG~-I~~v~v~-~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~---~~i~Gr~l~V 104 (264)
..++|||+||++++++++|+++|++||. |++|+|+ +|+.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 5689999999999999999999999998 9999998 888889999999999999999999999863 4699999999
Q ss_pred EeccCCCCC
Q 024697 105 NLASLGRPR 113 (264)
Q Consensus 105 ~~a~~~~~~ 113 (264)
++|..+...
T Consensus 87 ~~a~~~~~~ 95 (109)
T 2dis_A 87 DWAEPEIDV 95 (109)
T ss_dssp EESCSSCST
T ss_pred EEcCCCCCc
Confidence 999765543
No 64
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.7e-20 Score=134.43 Aligned_cols=76 Identities=39% Similarity=0.759 Sum_probs=73.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEEec
Q 024697 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLA 107 (264)
Q Consensus 32 ~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~a 107 (264)
++|||+|||.++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++||+.++..|+|++|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 5799999999999999999999999999999999998999999999999999999999999887799999999987
No 65
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.1e-19 Score=136.13 Aligned_cols=86 Identities=29% Similarity=0.501 Sum_probs=76.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCceeEE
Q 024697 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANC 104 (264)
Q Consensus 26 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l~V 104 (264)
..+...++|||+||++++++++|+++|++||.|++|+|++++. .++|||||+|.+.++|++||+.+ +..|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 87 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 4456779999999999999999999999999999999999964 48999999999999999999984 46799999999
Q ss_pred EeccCCCCC
Q 024697 105 NLASLGRPR 113 (264)
Q Consensus 105 ~~a~~~~~~ 113 (264)
+++..+...
T Consensus 88 ~~a~~~~~~ 96 (103)
T 2cq3_A 88 NNATARVMT 96 (103)
T ss_dssp EECCSSCCC
T ss_pred EEcccCCCC
Confidence 999765443
No 66
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.5e-20 Score=139.31 Aligned_cols=81 Identities=22% Similarity=0.266 Sum_probs=73.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEEec
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLA 107 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~a 107 (264)
....++|||+|||+++||++|+++|++||. ++|+|++|+ ++++||||||+|.+.++|++||+.++.+|+||.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEEC
Confidence 456689999999999999999999999994 599999998 899999999999999999999976667799999999998
Q ss_pred cCC
Q 024697 108 SLG 110 (264)
Q Consensus 108 ~~~ 110 (264)
...
T Consensus 90 ~~~ 92 (102)
T 1wez_A 90 STA 92 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 644
No 67
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.81 E-value=6.7e-20 Score=137.26 Aligned_cols=81 Identities=25% Similarity=0.482 Sum_probs=75.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCceeEEEeccC
Q 024697 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCNLASL 109 (264)
Q Consensus 31 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l~V~~a~~ 109 (264)
.++|||+||+.++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.+ +..|+|+.|+|+++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 579999999999999999999999999999999999999999999999999999999999885 4669999999999976
Q ss_pred CC
Q 024697 110 GR 111 (264)
Q Consensus 110 ~~ 111 (264)
+.
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 68
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.1e-20 Score=141.68 Aligned_cols=89 Identities=27% Similarity=0.541 Sum_probs=80.3
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeE
Q 024697 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (264)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~ 103 (264)
+..+...++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+
T Consensus 2 p~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (104)
T 1p1t_A 2 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALR 81 (104)
T ss_dssp CCSHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBE
T ss_pred CCcCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 3445667899999999999999999999999999999999999899999999999999999999998755 669999999
Q ss_pred EEeccCCCCC
Q 024697 104 CNLASLGRPR 113 (264)
Q Consensus 104 V~~a~~~~~~ 113 (264)
|+++..+..+
T Consensus 82 v~~a~~~~~~ 91 (104)
T 1p1t_A 82 VDNAASEKNK 91 (104)
T ss_dssp EEETTCTTHH
T ss_pred EEeCCCccch
Confidence 9999765443
No 69
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.1e-20 Score=142.44 Aligned_cols=79 Identities=13% Similarity=0.203 Sum_probs=70.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC--C-CCcCCceeEE
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP--T-PFIDGRRANC 104 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~--~-~~i~Gr~l~V 104 (264)
+...++|||+||++++||++|+++|++||+|++|+|+++ ||||||+|++.++|++||+.+ + .+|+|++|+|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999999999999999999999999999876 789999999999999999963 2 5699999999
Q ss_pred EeccCCCC
Q 024697 105 NLASLGRP 112 (264)
Q Consensus 105 ~~a~~~~~ 112 (264)
++|..+..
T Consensus 87 ~~A~~~~~ 94 (105)
T 1sjq_A 87 QFSNHKEL 94 (105)
T ss_dssp CCCSSSSC
T ss_pred EEcCCCCC
Confidence 99975543
No 70
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.81 E-value=3.4e-20 Score=132.47 Aligned_cols=75 Identities=39% Similarity=0.754 Sum_probs=71.2
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEEec
Q 024697 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLA 107 (264)
Q Consensus 33 ~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~a 107 (264)
+|||+|||+++++++|+++|++||.|++|++++++.+++++|||||+|.+.++|++||+.++..|+|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999999998999999999999999999999996667799999999875
No 71
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.81 E-value=6.8e-20 Score=150.10 Aligned_cols=82 Identities=18% Similarity=0.394 Sum_probs=75.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCC--CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEE
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFG--EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG--~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~ 105 (264)
...++|||+||+++++|++|+++|++|| .|++|+|++|+.+|++||||||+|.+.++|++||+.++ ..|+|+.|+|+
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~ 132 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVR 132 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEE
Confidence 3568999999999999999999999999 99999999999999999999999999999999999965 66999999999
Q ss_pred eccCC
Q 024697 106 LASLG 110 (264)
Q Consensus 106 ~a~~~ 110 (264)
+|..+
T Consensus 133 ~a~~~ 137 (156)
T 3n9u_C 133 PATRQ 137 (156)
T ss_dssp ECCHH
T ss_pred EcCCC
Confidence 99643
No 72
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.2e-19 Score=137.57 Aligned_cols=85 Identities=16% Similarity=0.413 Sum_probs=76.2
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCc-----
Q 024697 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFI----- 97 (264)
Q Consensus 24 ~~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i----- 97 (264)
....+...++|||+||+.++++++|+++|++||.|++|+|++|+ +++++|||||+|.+.++|++||+.++ ..|
T Consensus 18 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~ 96 (114)
T 1x5o_A 18 AKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPG 96 (114)
T ss_dssp CSCCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTT
T ss_pred hcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcc
Confidence 34556678999999999999999999999999999999999998 89999999999999999999999754 557
Q ss_pred ---CCceeEEEeccC
Q 024697 98 ---DGRRANCNLASL 109 (264)
Q Consensus 98 ---~Gr~l~V~~a~~ 109 (264)
.+++|.|+++.+
T Consensus 97 ~~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 97 VSAPTEPLLCKFSGP 111 (114)
T ss_dssp SCCCSSCBEEEECCC
T ss_pred ccCCCCceeEEccCC
Confidence 578899999863
No 73
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.81 E-value=5.9e-20 Score=143.36 Aligned_cols=84 Identities=15% Similarity=0.222 Sum_probs=76.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCC---EEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeE
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGE---ILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRAN 103 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~---I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~ 103 (264)
...+.++|||+||++++||++|+++|+.||. |++|+|++|+. |++||||||+|.+.++|++||+.++..|+|+.|+
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~ 91 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRYIE 91 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEE
Confidence 3456789999999999999999999999999 89999999986 9999999999999999999999545669999999
Q ss_pred EEeccCCC
Q 024697 104 CNLASLGR 111 (264)
Q Consensus 104 V~~a~~~~ 111 (264)
|.++..++
T Consensus 92 V~~a~~~~ 99 (118)
T 2db1_A 92 VFKSHRTE 99 (118)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99986543
No 74
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.81 E-value=6.2e-20 Score=134.68 Aligned_cols=83 Identities=25% Similarity=0.420 Sum_probs=75.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCC-ccceEEEEeCCHHHHHHHHhC-CCCCcCCceeEEEec
Q 024697 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGR-SKGYGFVTFREPEAARRACAD-PTPFIDGRRANCNLA 107 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~-skG~gFV~F~~~e~A~~Ai~~-~~~~i~Gr~l~V~~a 107 (264)
..++|||+||+.++++++|+++|++||.|++|+|++++.++. ++|||||+|.+.++|++||+. ++..|+|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 468999999999999999999999999999999999987766 999999999999999999998 556799999999999
Q ss_pred cCCCC
Q 024697 108 SLGRP 112 (264)
Q Consensus 108 ~~~~~ 112 (264)
...++
T Consensus 83 ~~~~~ 87 (88)
T 4a8x_A 83 LAPWP 87 (88)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 65543
No 75
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.81 E-value=3.9e-20 Score=140.13 Aligned_cols=82 Identities=17% Similarity=0.193 Sum_probs=76.0
Q ss_pred CCCCcEEEEcCCCC------CCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCC-
Q 024697 28 DTTYTKVFVGGLAW------ETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDG- 99 (264)
Q Consensus 28 ~~~~~~lfVgnLp~------~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~G- 99 (264)
+...++|||+|||. ++++++|+++|++||.|++|+|++|+.|+++||||||+|.+.++|++||+.+ +..|+|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34568999999999 9999999999999999999999999999999999999999999999999885 467999
Q ss_pred ceeEEEeccC
Q 024697 100 RRANCNLASL 109 (264)
Q Consensus 100 r~l~V~~a~~ 109 (264)
+.|+|+++..
T Consensus 83 r~l~V~~a~~ 92 (100)
T 3ns6_A 83 HRLFLYTMKD 92 (100)
T ss_dssp CBCEEEESHH
T ss_pred eEEEEEECch
Confidence 9999999964
No 76
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=7.5e-20 Score=137.27 Aligned_cols=82 Identities=20% Similarity=0.256 Sum_probs=75.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEe
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~ 106 (264)
....++|||+|||+++++++|+++|++||.|++++++.++.+++++|||||+|.+.++|++||+.++ ..|+|++|+|++
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 4567899999999999999999999999999999999999899999999999999999999998865 669999999999
Q ss_pred ccC
Q 024697 107 ASL 109 (264)
Q Consensus 107 a~~ 109 (264)
+..
T Consensus 92 a~~ 94 (98)
T 2cqp_A 92 GSG 94 (98)
T ss_dssp SSC
T ss_pred cCC
Confidence 853
No 77
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.80 E-value=2.2e-19 Score=133.06 Aligned_cols=82 Identities=27% Similarity=0.487 Sum_probs=74.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCceeEEEe
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCNL 106 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l~V~~ 106 (264)
....++|||+||++++++++|+++|++||.|++|+|+++ +++++|||||+|.+.++|++||+.+ +..|+|++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 446789999999999999999999999999999999985 7999999999999999999999984 5679999999999
Q ss_pred ccCCC
Q 024697 107 ASLGR 111 (264)
Q Consensus 107 a~~~~ 111 (264)
+....
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 96544
No 78
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.1e-19 Score=136.12 Aligned_cols=81 Identities=19% Similarity=0.210 Sum_probs=72.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCC-----c
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDG-----R 100 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~G-----r 100 (264)
.....++|||+||++++++++|+++|++||+|++|+|++| |||||+|.+.++|++||+.++ ..|+| +
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 3456789999999999999999999999999999999887 799999999999999999865 56999 9
Q ss_pred eeEEEeccCCCCCC
Q 024697 101 RANCNLASLGRPRP 114 (264)
Q Consensus 101 ~l~V~~a~~~~~~~ 114 (264)
.|+|++|..+....
T Consensus 84 ~i~V~~a~~~~~~~ 97 (108)
T 1x4c_A 84 YIRVKVDGPRSPSY 97 (108)
T ss_dssp EEEEEESSCCSCCC
T ss_pred EEEEEeCCCCCCCC
Confidence 99999997654433
No 79
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=135.47 Aligned_cols=81 Identities=26% Similarity=0.373 Sum_probs=71.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEE
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~ 105 (264)
.+...++|||+||++++++++|+++|++||.| +++++ .+++++|||||+|.+.++|++||+.++ ..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 34567999999999999999999999999987 56666 579999999999999999999999755 56999999999
Q ss_pred eccCCC
Q 024697 106 LASLGR 111 (264)
Q Consensus 106 ~a~~~~ 111 (264)
++..+.
T Consensus 87 ~a~~~~ 92 (101)
T 2fc9_A 87 LQGPRG 92 (101)
T ss_dssp ECSSCC
T ss_pred EcCCCC
Confidence 997653
No 80
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.80 E-value=3.1e-20 Score=132.56 Aligned_cols=75 Identities=31% Similarity=0.581 Sum_probs=72.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEEec
Q 024697 33 KVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLA 107 (264)
Q Consensus 33 ~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~a 107 (264)
+|||+|||.++++++|+++|++||.|++|++++|+.+++++|||||+|.+.++|++||+.++..|+|+.|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 599999999999999999999999999999999999999999999999999999999998778899999999875
No 81
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.80 E-value=2e-19 Score=146.32 Aligned_cols=89 Identities=29% Similarity=0.538 Sum_probs=80.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEE
Q 024697 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (264)
Q Consensus 26 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V 104 (264)
......++|||+||++++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|
T Consensus 65 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 144 (158)
T 2kn4_A 65 MDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 144 (158)
T ss_dssp CCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344567899999999999999999999999999999999999899999999999999999999999855 5699999999
Q ss_pred EeccCCCCCC
Q 024697 105 NLASLGRPRP 114 (264)
Q Consensus 105 ~~a~~~~~~~ 114 (264)
+++..++++.
T Consensus 145 ~~a~~~~~~~ 154 (158)
T 2kn4_A 145 QMARYGRPPD 154 (158)
T ss_dssp EEECCSSCCC
T ss_pred EECCCCCCCC
Confidence 9997665443
No 82
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.80 E-value=2e-19 Score=140.70 Aligned_cols=83 Identities=22% Similarity=0.402 Sum_probs=75.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEEecc
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLAS 108 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~a~ 108 (264)
.+.++|||+||+.++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.++..|+|+.|+|+++.
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 35789999999999999999999999999999999999989999999999999999999999434567999999999996
Q ss_pred CCC
Q 024697 109 LGR 111 (264)
Q Consensus 109 ~~~ 111 (264)
...
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 83
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.80 E-value=3.7e-20 Score=138.03 Aligned_cols=81 Identities=19% Similarity=0.249 Sum_probs=73.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhC-CCCCcCCceeEEEec
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD-PTPFIDGRRANCNLA 107 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~-~~~~i~Gr~l~V~~a 107 (264)
...++|||+|||+++++++|+++|++||.|+++++++++.+++++|||||+|.+.++|++||+. ++..|+|++|+|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 3468999999999999999999999999999999999999999999999999999999999997 456799999999988
Q ss_pred cC
Q 024697 108 SL 109 (264)
Q Consensus 108 ~~ 109 (264)
..
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 53
No 84
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.80 E-value=7.5e-20 Score=138.35 Aligned_cols=84 Identities=19% Similarity=0.408 Sum_probs=72.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecC-CCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEE
Q 024697 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDK-NTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANC 104 (264)
Q Consensus 26 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~-~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V 104 (264)
......++|||+||++++++++|+++|++|| |++|+|++++ .+++++|||||+|.+.++|++||+.++..|+|+.|+|
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V 92 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRV 92 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEE
Confidence 3456779999999999999999999999999 9999999998 6899999999999999999999944557799999999
Q ss_pred EeccCC
Q 024697 105 NLASLG 110 (264)
Q Consensus 105 ~~a~~~ 110 (264)
+++..+
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 999654
No 85
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.80 E-value=2.3e-19 Score=136.69 Aligned_cols=83 Identities=29% Similarity=0.404 Sum_probs=76.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhC-CCCCcCCceeE
Q 024697 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD-PTPFIDGRRAN 103 (264)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~-~~~~i~Gr~l~ 103 (264)
+......++|||+||++++++++|+++|++||.|++|+|++++ +++++|||||+|.+.++|++||+. ++..|+|+.|+
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4455678999999999999999999999999999999999998 899999999999999999999998 45679999999
Q ss_pred EEecc
Q 024697 104 CNLAS 108 (264)
Q Consensus 104 V~~a~ 108 (264)
|+++.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99984
No 86
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.1e-19 Score=140.02 Aligned_cols=84 Identities=25% Similarity=0.348 Sum_probs=75.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH---HHhhcCCCEEEEEEeecCCCC---CccceEEEEeCCHHHHHHHHhCCC-CCcCCc
Q 024697 28 DTTYTKVFVGGLAWETQSETMR---RYFEQFGEILEAVVITDKNTG---RSKGYGFVTFREPEAARRACADPT-PFIDGR 100 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~---~~F~~fG~I~~v~v~~d~~tg---~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr 100 (264)
....++|||+||+++++|++|+ ++|++||+|++|+|++|+.++ +++|||||+|.+.++|++||+.++ ..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 4457899999999999999999 999999999999999998754 556999999999999999999854 669999
Q ss_pred eeEEEeccCCC
Q 024697 101 RANCNLASLGR 111 (264)
Q Consensus 101 ~l~V~~a~~~~ 111 (264)
.|+|++|..+.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999996553
No 87
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.7e-19 Score=131.83 Aligned_cols=80 Identities=19% Similarity=0.369 Sum_probs=73.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEe
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~ 106 (264)
....++|||+||++++++++|+++|++| .|++|+|+++ .+++++|||||+|.+.++|++||+ ++ ..|+|+.|+|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 4567899999999999999999999999 9999999999 689999999999999999999999 66 569999999999
Q ss_pred ccCC
Q 024697 107 ASLG 110 (264)
Q Consensus 107 a~~~ 110 (264)
+..+
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 9654
No 88
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.3e-19 Score=134.66 Aligned_cols=79 Identities=13% Similarity=0.137 Sum_probs=72.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeE
Q 024697 29 TTYTKVFVGGLAWETQSETMR----RYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~----~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~ 103 (264)
.+.++|||+||++++++++|+ ++|++||.|++|+|++|+.+ ||||||+|.+.++|++||+.++ ..|+|++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 356899999999999999999 99999999999999999865 8999999999999999999855 569999999
Q ss_pred EEeccCC
Q 024697 104 CNLASLG 110 (264)
Q Consensus 104 V~~a~~~ 110 (264)
|++|...
T Consensus 84 V~~a~~~ 90 (96)
T 2dgx_A 84 VSLATGA 90 (96)
T ss_dssp EEECCCS
T ss_pred EEEcCCC
Confidence 9999544
No 89
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.8e-20 Score=135.32 Aligned_cols=80 Identities=28% Similarity=0.477 Sum_probs=73.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEec
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a 107 (264)
...++|||+||++++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 456899999999999999999999999999999999999999999999999999999999999855 6699999887765
Q ss_pred c
Q 024697 108 S 108 (264)
Q Consensus 108 ~ 108 (264)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 90
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.79 E-value=2.1e-19 Score=155.89 Aligned_cols=81 Identities=19% Similarity=0.381 Sum_probs=75.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCC--CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEe
Q 024697 30 TYTKVFVGGLAWETQSETMRRYFEQFG--EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte~~L~~~F~~fG--~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~ 106 (264)
..++|||+||++++||++|+++|++|| +|++|+|++|+.|+++||||||+|.+.++|++||+.++ .+|+|++|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 99999999999999999999999999999999999866 679999999999
Q ss_pred ccCC
Q 024697 107 ASLG 110 (264)
Q Consensus 107 a~~~ 110 (264)
|...
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 9644
No 91
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.79 E-value=5.5e-19 Score=140.51 Aligned_cols=82 Identities=32% Similarity=0.449 Sum_probs=75.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEE
Q 024697 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (264)
Q Consensus 26 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V 104 (264)
......++|||+||+.++++++|+++|++||.|++++|++|+.+++++|||||+|.+.++|++||+.++ ..|+|++|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345567999999999999999999999999999999999999999999999999999999999998765 6699999999
Q ss_pred Eec
Q 024697 105 NLA 107 (264)
Q Consensus 105 ~~a 107 (264)
++|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 975
No 92
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2.2e-19 Score=138.61 Aligned_cols=80 Identities=20% Similarity=0.334 Sum_probs=73.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEEec
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLA 107 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~a 107 (264)
..+.++|||+||++++||++|+++|+.| .|++|+|++|+. |+++|||||+|.+.++|++||+.++..|+||.|+|..+
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEEC
Confidence 3446799999999999999999999999 999999999985 99999999999999999999976667799999999988
Q ss_pred cC
Q 024697 108 SL 109 (264)
Q Consensus 108 ~~ 109 (264)
..
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 54
No 93
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=9.6e-19 Score=133.24 Aligned_cols=80 Identities=14% Similarity=0.163 Sum_probs=70.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC---CCCcCCceeEE
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP---TPFIDGRRANC 104 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~---~~~i~Gr~l~V 104 (264)
....++|||+||+++++|++|+++|++||.|++|+|+++ ||||||+|++.++|++||+.+ ...|+|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 446789999999999999999999999999999999875 789999999999999999863 24699999999
Q ss_pred EeccCCCCC
Q 024697 105 NLASLGRPR 113 (264)
Q Consensus 105 ~~a~~~~~~ 113 (264)
.++..+...
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2cq1_A 86 QYSNHKELK 94 (101)
T ss_dssp EECSCSSCC
T ss_pred EEcCcccCc
Confidence 999755433
No 94
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.79 E-value=3.2e-19 Score=146.78 Aligned_cols=91 Identities=24% Similarity=0.322 Sum_probs=79.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeE
Q 024697 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRAN 103 (264)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~ 103 (264)
+......++|||+||++++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|+.|.
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3445567899999999999999999999999999999999999999999999999999999999999854 669999999
Q ss_pred EEeccCCCCCCc
Q 024697 104 CNLASLGRPRPQ 115 (264)
Q Consensus 104 V~~a~~~~~~~~ 115 (264)
|.++..+..+..
T Consensus 146 V~~a~~~~~~~~ 157 (165)
T 1rk8_A 146 VDWCFVKGPKRV 157 (165)
T ss_dssp EEESEECC----
T ss_pred EEEecCCCCCCC
Confidence 999987655443
No 95
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.79 E-value=1.4e-19 Score=136.85 Aligned_cols=85 Identities=31% Similarity=0.559 Sum_probs=77.9
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEE
Q 024697 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANC 104 (264)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V 104 (264)
+..+...++|||+||++++++++|+++|++||.|++|+|++|+ +++++|||||+|.+.++|++||+ ++..|+|++|.|
T Consensus 3 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v 80 (102)
T 2xs2_A 3 PEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKL 80 (102)
T ss_dssp CCCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEE
Confidence 3445667999999999999999999999999999999999998 89999999999999999999999 667799999999
Q ss_pred EeccCCC
Q 024697 105 NLASLGR 111 (264)
Q Consensus 105 ~~a~~~~ 111 (264)
.++..+.
T Consensus 81 ~~a~~~~ 87 (102)
T 2xs2_A 81 GPAIRKQ 87 (102)
T ss_dssp EEEEECC
T ss_pred EECCcCc
Confidence 9997554
No 96
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.79 E-value=4.1e-20 Score=139.62 Aligned_cols=84 Identities=18% Similarity=0.245 Sum_probs=75.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEE
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~ 105 (264)
.....++|||+||++++++++|+++|++||.|.+ ++++++.+++++|||||+|.+.++|++||+ ++ ..|+|+.|+|+
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3446789999999999999999999999999988 777887789999999999999999999999 65 66999999999
Q ss_pred eccCCCC
Q 024697 106 LASLGRP 112 (264)
Q Consensus 106 ~a~~~~~ 112 (264)
++..+..
T Consensus 91 ~a~~~~~ 97 (101)
T 1fj7_A 91 KPKGRDG 97 (101)
T ss_dssp CCSCCCC
T ss_pred EcCCCCC
Confidence 9975543
No 97
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=5.9e-19 Score=135.09 Aligned_cols=79 Identities=22% Similarity=0.282 Sum_probs=69.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC---CCcCCceeEE
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT---PFIDGRRANC 104 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~---~~i~Gr~l~V 104 (264)
....++|||+||+++++|++|+++|++||.|++|+|+++ ||||||+|++.++|++||+.++ ..|+|++|+|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 345689999999999999999999999999999999765 7899999999999999998743 3599999999
Q ss_pred EeccCCCC
Q 024697 105 NLASLGRP 112 (264)
Q Consensus 105 ~~a~~~~~ 112 (264)
+++..++.
T Consensus 86 ~~a~~~~~ 93 (104)
T 1wex_A 86 NYSTSKRI 93 (104)
T ss_dssp EECSSSSC
T ss_pred EEccCccc
Confidence 99976543
No 98
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.79 E-value=1.4e-18 Score=136.18 Aligned_cols=85 Identities=27% Similarity=0.373 Sum_probs=77.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEE
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~ 105 (264)
.....++|||+||+.++++++|+++|++||+|++|+|++|+ +++++|||||+|.+.++|++||+.++ ..|+|++|+|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999998 89999999999999999999999754 66999999999
Q ss_pred eccCCCC
Q 024697 106 LASLGRP 112 (264)
Q Consensus 106 ~a~~~~~ 112 (264)
+|.....
T Consensus 110 ~a~~~~~ 116 (124)
T 2kt5_A 110 LVASQID 116 (124)
T ss_dssp EECCTTC
T ss_pred EeCCCCC
Confidence 9975543
No 99
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.78 E-value=1.4e-19 Score=143.26 Aligned_cols=82 Identities=23% Similarity=0.306 Sum_probs=74.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEE--EEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEE
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEIL--EAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANC 104 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~--~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V 104 (264)
+..+.++|||+|||+++||++|+++|++| .|+ +|+|++|+. |++||||||+|.+.++|++||+.++..|+||.|+|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEE
Confidence 34567899999999999999999999999 777 999999987 99999999999999999999998778899999999
Q ss_pred EeccCC
Q 024697 105 NLASLG 110 (264)
Q Consensus 105 ~~a~~~ 110 (264)
..+..+
T Consensus 116 ~~a~~~ 121 (126)
T 2hgm_A 116 FKSSQE 121 (126)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 988543
No 100
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=130.64 Aligned_cols=78 Identities=26% Similarity=0.470 Sum_probs=69.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcC--CceeEE
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFID--GRRANC 104 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~--Gr~l~V 104 (264)
....++|||+||+.++++++|+++|++||.|++|+++++ +|||||+|.+.++|++||+.+ +..|+ |+.|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 445689999999999999999999999999999999765 789999999999999999984 46788 999999
Q ss_pred EeccCCC
Q 024697 105 NLASLGR 111 (264)
Q Consensus 105 ~~a~~~~ 111 (264)
+++..+.
T Consensus 88 ~~a~~~~ 94 (97)
T 1why_A 88 DFAKSGP 94 (97)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9996543
No 101
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.78 E-value=9.7e-19 Score=132.68 Aligned_cols=80 Identities=23% Similarity=0.362 Sum_probs=70.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCceeEEEe
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCNL 106 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l~V~~ 106 (264)
....++|||+||++++|+++|+++|++||.|++|+|+ ++||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 4567899999999999999999999999999999986 349999999999999999984 4669999999999
Q ss_pred ccCCCCCCc
Q 024697 107 ASLGRPRPQ 115 (264)
Q Consensus 107 a~~~~~~~~ 115 (264)
+..+..++.
T Consensus 80 a~~~~~~~~ 88 (103)
T 2dgu_A 80 AKPPDQKRK 88 (103)
T ss_dssp CCCCCCCCC
T ss_pred cCCCcccch
Confidence 976655443
No 102
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.2e-19 Score=137.11 Aligned_cols=85 Identities=28% Similarity=0.514 Sum_probs=76.2
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCcee
Q 024697 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRA 102 (264)
Q Consensus 24 ~~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l 102 (264)
....+...++|||+||+.++++++|+++|++||+|++|+|++|+ ++++|||||+|.+.++|++||+.+ +..|+|++|
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34456678999999999999999999999999999999999995 458999999999999999999984 567999999
Q ss_pred EEEeccCC
Q 024697 103 NCNLASLG 110 (264)
Q Consensus 103 ~V~~a~~~ 110 (264)
+|+++..+
T Consensus 100 ~V~~a~~~ 107 (109)
T 2err_A 100 EVNNATAR 107 (109)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 99999653
No 103
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.78 E-value=7.8e-20 Score=135.08 Aligned_cols=79 Identities=29% Similarity=0.547 Sum_probs=72.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEeccCC
Q 024697 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLASLG 110 (264)
Q Consensus 32 ~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a~~~ 110 (264)
++|||+||+.++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.+ |++||+.++ ..|+|++|+|++|...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 999999965 6699999999999755
Q ss_pred C
Q 024697 111 R 111 (264)
Q Consensus 111 ~ 111 (264)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 104
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=130.75 Aligned_cols=81 Identities=17% Similarity=0.273 Sum_probs=70.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCceeEE
Q 024697 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANC 104 (264)
Q Consensus 26 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l~V 104 (264)
......++|||+||++++++++|+++|++||.|. ++++++ +++|||||+|.+.++|++||+.+ +..|+|++|+|
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3455678999999999999999999999999997 677654 57899999999999999999884 56799999999
Q ss_pred EeccCCC
Q 024697 105 NLASLGR 111 (264)
Q Consensus 105 ~~a~~~~ 111 (264)
+++..++
T Consensus 89 ~~a~~~~ 95 (97)
T 2e5j_A 89 ALARQQR 95 (97)
T ss_dssp EECCCCC
T ss_pred EEcCCCC
Confidence 9996553
No 105
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=131.34 Aligned_cols=82 Identities=33% Similarity=0.503 Sum_probs=73.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCceeEEE
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCN 105 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l~V~ 105 (264)
.....++|||+||++++++++|+++|+.| .+|++++++.+++++|||||+|.+.++|++||+.+ +..|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34567899999999999999999999987 47888899889999999999999999999999974 567999999999
Q ss_pred eccCCC
Q 024697 106 LASLGR 111 (264)
Q Consensus 106 ~a~~~~ 111 (264)
++..+.
T Consensus 88 ~a~~~~ 93 (102)
T 2fc8_A 88 WAKPKG 93 (102)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 996554
No 106
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.7e-19 Score=137.34 Aligned_cols=80 Identities=14% Similarity=0.222 Sum_probs=71.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC---CCcCCceeEE
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT---PFIDGRRANC 104 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~---~~i~Gr~l~V 104 (264)
....++|||+||+++++|++|+++|++||+|++|+|+++ ||||||+|++.++|++||+.++ ..|+|++|+|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 445789999999999999999999999999999999876 7899999999999999999754 4699999999
Q ss_pred EeccCCCCC
Q 024697 105 NLASLGRPR 113 (264)
Q Consensus 105 ~~a~~~~~~ 113 (264)
+++..++.+
T Consensus 102 ~~a~~k~~~ 110 (119)
T 2ad9_A 102 QFSNHKELK 110 (119)
T ss_dssp EECSSSSCC
T ss_pred EEccCCCCC
Confidence 999765443
No 107
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.77 E-value=4.5e-19 Score=142.17 Aligned_cols=83 Identities=16% Similarity=0.206 Sum_probs=75.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCC---EEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeE
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGE---ILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRAN 103 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~---I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~ 103 (264)
+..+.++|||+||++++||++|+++|++||. |++|+|++|+. |++||||||+|.+.++|++||+.++..|+||.|+
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~ 118 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRYIE 118 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEE
Confidence 3456789999999999999999999999999 89999999987 9999999999999999999999444679999999
Q ss_pred EEeccCC
Q 024697 104 CNLASLG 110 (264)
Q Consensus 104 V~~a~~~ 110 (264)
|.++..+
T Consensus 119 V~~a~~~ 125 (136)
T 2hgl_A 119 VFKSHRT 125 (136)
T ss_dssp EEECCHH
T ss_pred EEECChH
Confidence 9998643
No 108
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.77 E-value=1.6e-19 Score=145.25 Aligned_cols=84 Identities=20% Similarity=0.234 Sum_probs=73.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEE
Q 024697 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCN 105 (264)
Q Consensus 26 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~ 105 (264)
....+.++|||+||++++||++|+++|++|| |++|+|++|+. +++||||||+|++.++|++||+.++.+|+||.|+|.
T Consensus 41 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELF 118 (139)
T ss_dssp ----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEE
Confidence 3455678999999999999999999999999 77999999986 999999999999999999999556678999999999
Q ss_pred eccCCC
Q 024697 106 LASLGR 111 (264)
Q Consensus 106 ~a~~~~ 111 (264)
++..+.
T Consensus 119 ~a~~~~ 124 (139)
T 2hgn_A 119 LNSTTG 124 (139)
T ss_dssp ECCCSC
T ss_pred ECCCCC
Confidence 986543
No 109
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=8.7e-19 Score=132.24 Aligned_cols=76 Identities=25% Similarity=0.422 Sum_probs=70.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCceeEEEeccCC
Q 024697 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCNLASLG 110 (264)
Q Consensus 32 ~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l~V~~a~~~ 110 (264)
++|||+||++++|+++|+++|++||+|++|+|+++ ++|||||+|.+.++|++||+.+ +..|+|+.|+|+++..+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999887 6899999999999999999985 47799999999999765
Q ss_pred CC
Q 024697 111 RP 112 (264)
Q Consensus 111 ~~ 112 (264)
..
T Consensus 76 ~~ 77 (101)
T 2hvz_A 76 PR 77 (101)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 110
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=6.7e-19 Score=134.38 Aligned_cols=76 Identities=17% Similarity=0.219 Sum_probs=68.6
Q ss_pred CCCcEEEEcCCCC-CCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC---CCcCCceeEE
Q 024697 29 TTYTKVFVGGLAW-ETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT---PFIDGRRANC 104 (264)
Q Consensus 29 ~~~~~lfVgnLp~-~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~---~~i~Gr~l~V 104 (264)
...++|||+||++ +++|++|+++|++||+|++|+|+++ ||||||+|++.++|++||+.++ ..|+|++|+|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3578999999999 9999999999999999999999876 5799999999999999999754 3499999999
Q ss_pred EeccCC
Q 024697 105 NLASLG 110 (264)
Q Consensus 105 ~~a~~~ 110 (264)
.+|...
T Consensus 87 ~~a~~~ 92 (102)
T 1x4d_A 87 HLSQKY 92 (102)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 999644
No 111
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.77 E-value=7.2e-19 Score=133.63 Aligned_cols=81 Identities=22% Similarity=0.293 Sum_probs=70.2
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-C--CcCCce
Q 024697 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-P--FIDGRR 101 (264)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~--~i~Gr~ 101 (264)
......+++|||+||++++||++|+++|++||.|++|+++++ ||||||+|++.++|++||+.++ . .|+|++
T Consensus 15 ~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~ 88 (100)
T 3r27_A 15 PHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHP 88 (100)
T ss_dssp --CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEE
T ss_pred cccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcE
Confidence 334456789999999999999999999999999999999854 7899999999999999999854 3 389999
Q ss_pred eEEEeccCCC
Q 024697 102 ANCNLASLGR 111 (264)
Q Consensus 102 l~V~~a~~~~ 111 (264)
|+|++++.++
T Consensus 89 i~V~~S~~k~ 98 (100)
T 3r27_A 89 AFVNYSTSQK 98 (100)
T ss_dssp EEEEECSCSC
T ss_pred EEEEeccccc
Confidence 9999996543
No 112
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.77 E-value=3.6e-19 Score=136.29 Aligned_cols=83 Identities=11% Similarity=0.217 Sum_probs=75.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCC---EEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeE
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGE---ILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRAN 103 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~---I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~ 103 (264)
...+.++|||+||++++|+++|+++|+.||. |.+|+|++|+. |+++|||||+|.+.++|++||+.++..|+|+.|+
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEE
Confidence 3456789999999999999999999999998 89999999987 9999999999999999999999555679999999
Q ss_pred EEeccCC
Q 024697 104 CNLASLG 110 (264)
Q Consensus 104 V~~a~~~ 110 (264)
|.++..+
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9998654
No 113
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.4e-19 Score=136.37 Aligned_cols=89 Identities=18% Similarity=0.194 Sum_probs=73.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEE
Q 024697 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (264)
Q Consensus 26 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V 104 (264)
......++|||+||++++|+++|+++|++||.|++|.+..+..+++++|||||+|.+.++|++||+.++ ..|+|+.|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 99 (115)
T 2cpx_A 20 NPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVI 99 (115)
T ss_dssp CCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 334567899999999999999999999999999544333332378999999999999999999999855 6699999999
Q ss_pred EeccCCCCCC
Q 024697 105 NLASLGRPRP 114 (264)
Q Consensus 105 ~~a~~~~~~~ 114 (264)
+++..+..+.
T Consensus 100 ~~a~~~~~~~ 109 (115)
T 2cpx_A 100 EFGKNKKQRS 109 (115)
T ss_dssp EECCCCSCCC
T ss_pred EEccCCCCCC
Confidence 9997665443
No 114
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.77 E-value=2.5e-18 Score=131.88 Aligned_cols=77 Identities=23% Similarity=0.467 Sum_probs=68.7
Q ss_pred CCCCCcEEEEcCCCCC-CCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCceeEE
Q 024697 27 GDTTYTKVFVGGLAWE-TQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANC 104 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~-vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l~V 104 (264)
.....++|||+||+++ +++++|+++|++||.|++|+| ++|||||+|.+.++|++||+.+ +..|+|+.|+|
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3445689999999999 999999999999999999998 4789999999999999999885 46699999999
Q ss_pred EeccCCC
Q 024697 105 NLASLGR 111 (264)
Q Consensus 105 ~~a~~~~ 111 (264)
+++...+
T Consensus 95 ~~a~~~~ 101 (110)
T 1wf1_A 95 NMAGEPK 101 (110)
T ss_dssp EESCCCC
T ss_pred EECCCCC
Confidence 9996543
No 115
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.76 E-value=1.6e-18 Score=132.18 Aligned_cols=81 Identities=21% Similarity=0.345 Sum_probs=72.6
Q ss_pred CCCCCcEEEEcCCCCCC------CHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCC
Q 024697 27 GDTTYTKVFVGGLAWET------QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDG 99 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~v------te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~G 99 (264)
.+...++|||+|||+++ ++++|+++|++||.|++|+|++ .+|+++|||||+|.+.++|++||+.++ ..|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC--BTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC--CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 34457899999999999 7899999999999999999883 579999999999999999999999865 56999
Q ss_pred c-eeEEEeccC
Q 024697 100 R-RANCNLASL 109 (264)
Q Consensus 100 r-~l~V~~a~~ 109 (264)
+ +|+|+++..
T Consensus 89 ~~~l~V~~a~~ 99 (105)
T 2nlw_A 89 QHTFRVNLFTD 99 (105)
T ss_dssp TCEEEEECSCC
T ss_pred CceEEEEEcch
Confidence 8 999999964
No 116
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.3e-18 Score=125.88 Aligned_cols=77 Identities=30% Similarity=0.509 Sum_probs=69.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEe
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~ 106 (264)
....++|||+||++++++++|+++|++||.|++|+|+ ||||||+|.+.++|++||+.++ ..|+|++|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 3467899999999999999999999999999999997 5799999999999999998854 679999999999
Q ss_pred ccCCCC
Q 024697 107 ASLGRP 112 (264)
Q Consensus 107 a~~~~~ 112 (264)
+..+..
T Consensus 77 a~~~~~ 82 (90)
T 2dnq_A 77 SKNKSK 82 (90)
T ss_dssp SSCCCC
T ss_pred CCCCCC
Confidence 976543
No 117
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.4e-18 Score=124.77 Aligned_cols=78 Identities=31% Similarity=0.475 Sum_probs=70.2
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-C-CCcCCcee
Q 024697 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-T-PFIDGRRA 102 (264)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~-~~i~Gr~l 102 (264)
+..+...++|||+||+.++++++|+++|++||.|++|+++++ ||||||+|.+.++|++||+.+ + ..++|++|
T Consensus 6 ~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l 79 (85)
T 2ytc_A 6 SGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRL 79 (85)
T ss_dssp CCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEEC
T ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEE
Confidence 334567799999999999999999999999999999999874 789999999999999999975 5 56999999
Q ss_pred EEEecc
Q 024697 103 NCNLAS 108 (264)
Q Consensus 103 ~V~~a~ 108 (264)
+|++|+
T Consensus 80 ~v~~ak 85 (85)
T 2ytc_A 80 NVKWGR 85 (85)
T ss_dssp CEEECC
T ss_pred EEEecC
Confidence 999973
No 118
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.4e-18 Score=134.74 Aligned_cols=78 Identities=14% Similarity=0.226 Sum_probs=69.2
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC---CCcCCceeE
Q 024697 28 DTTYTKVFVGGLAWE-TQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT---PFIDGRRAN 103 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~-vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~---~~i~Gr~l~ 103 (264)
....++|||+||+++ ++|++|+++|++||+|++|+|+++ ||||||+|++.++|++||+.++ .+|+|++|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 456789999999998 999999999999999999999753 7899999999999999999742 459999999
Q ss_pred EEeccCCC
Q 024697 104 CNLASLGR 111 (264)
Q Consensus 104 V~~a~~~~ 111 (264)
|.++..+.
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99996543
No 119
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=6.7e-19 Score=138.78 Aligned_cols=83 Identities=22% Similarity=0.269 Sum_probs=74.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCE----EEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeE
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEI----LEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRAN 103 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I----~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~ 103 (264)
..+.++|||+|||+++||++|+++|++||.| ++|+|++|+ +|+++|||||+|.+.++|++||+.+++.|+||.|+
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEE
Confidence 3567899999999999999999999999986 689999995 89999999999999999999999866779999999
Q ss_pred EEeccCCC
Q 024697 104 CNLASLGR 111 (264)
Q Consensus 104 V~~a~~~~ 111 (264)
|..+..++
T Consensus 99 V~~a~~~e 106 (123)
T 2dha_A 99 LFRSTAAE 106 (123)
T ss_dssp CEEECHHH
T ss_pred EEECCHHH
Confidence 99886543
No 120
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3.2e-18 Score=128.76 Aligned_cols=78 Identities=27% Similarity=0.459 Sum_probs=70.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCceeEEEe
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCNL 106 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l~V~~ 106 (264)
....++|||+||++++++++|+++|++||.|++|+++++ ||||||+|.+.++|++||+.+ +..|+|++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 456789999999999999999999999999999999765 789999999999999999884 4679999999999
Q ss_pred ccCCC
Q 024697 107 ASLGR 111 (264)
Q Consensus 107 a~~~~ 111 (264)
+..+.
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 96543
No 121
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.76 E-value=2.7e-18 Score=143.05 Aligned_cols=87 Identities=37% Similarity=0.602 Sum_probs=79.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEE
Q 024697 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANC 104 (264)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V 104 (264)
+......++|||+|||+++|+++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.++..|+|+.|.|
T Consensus 7 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v 86 (196)
T 1l3k_A 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEP 86 (196)
T ss_dssp -CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeee
Confidence 44556789999999999999999999999999999999999999999999999999999999999999778899999999
Q ss_pred EeccCCC
Q 024697 105 NLASLGR 111 (264)
Q Consensus 105 ~~a~~~~ 111 (264)
.++....
T Consensus 87 ~~~~~~~ 93 (196)
T 1l3k_A 87 KRAVSRE 93 (196)
T ss_dssp EECCC--
T ss_pred ecccCcc
Confidence 9986543
No 122
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.76 E-value=1.7e-18 Score=133.00 Aligned_cols=83 Identities=22% Similarity=0.397 Sum_probs=70.1
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCc
Q 024697 22 LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGR 100 (264)
Q Consensus 22 ~~~~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr 100 (264)
......+...++|||+||++++++++|+++|++||.|++|+|+ +|||||+|.+.++|++||+.+ +..|+|+
T Consensus 22 ~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (108)
T 2jvo_A 22 HHRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQ 93 (108)
T ss_dssp ------CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred ccccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 3345566788999999999999999999999999999999997 689999999999999999984 5669999
Q ss_pred eeEEEeccCCCC
Q 024697 101 RANCNLASLGRP 112 (264)
Q Consensus 101 ~l~V~~a~~~~~ 112 (264)
.|+|+++..+..
T Consensus 94 ~l~V~~a~~~~~ 105 (108)
T 2jvo_A 94 PLEVVYSKLPAK 105 (108)
T ss_dssp ECEEESCSCCC-
T ss_pred EEEEEEecCCCC
Confidence 999999976543
No 123
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=5.5e-20 Score=142.54 Aligned_cols=85 Identities=27% Similarity=0.400 Sum_probs=78.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEE--------EEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCc
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE--------AVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFI 97 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~--------v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i 97 (264)
++.+.++|||+||+.++++++|+++|++||.|++ |+|++|+.+++++|||||+|.+.++|++||+.++ ..|
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4567789999999999999999999999999999 9999998899999999999999999999999855 669
Q ss_pred CCceeEEEeccCCC
Q 024697 98 DGRRANCNLASLGR 111 (264)
Q Consensus 98 ~Gr~l~V~~a~~~~ 111 (264)
+|++|+|+++..+.
T Consensus 83 ~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 83 SGNPIKVSFATRRA 96 (116)
Confidence 99999999996543
No 124
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.75 E-value=3.8e-18 Score=142.10 Aligned_cols=87 Identities=28% Similarity=0.558 Sum_probs=76.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEEec
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLA 107 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~a 107 (264)
....++|||+||+.++|+++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.++..|+|+.|.|.+|
T Consensus 101 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180 (196)
T ss_dssp --CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEEC
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEec
Confidence 34568999999999999999999999999999999999998999999999999999999999998778899999999999
Q ss_pred cCCCCCC
Q 024697 108 SLGRPRP 114 (264)
Q Consensus 108 ~~~~~~~ 114 (264)
..+....
T Consensus 181 ~~k~~~~ 187 (196)
T 1l3k_A 181 LSKQEMA 187 (196)
T ss_dssp C------
T ss_pred CChhHhc
Confidence 7665443
No 125
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.75 E-value=1.7e-18 Score=125.72 Aligned_cols=73 Identities=21% Similarity=0.370 Sum_probs=65.9
Q ss_pred CcEEEEcCCCCCC------CHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCc-ee
Q 024697 31 YTKVFVGGLAWET------QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGR-RA 102 (264)
Q Consensus 31 ~~~lfVgnLp~~v------te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr-~l 102 (264)
.++|||+|||.++ ++++|+++|++||.|++|+|++ .+|+++|||||+|.+.++|++||+.++ ..|+|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE--EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC--BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC--CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3789999999999 7799999999999999999873 489999999999999999999999865 669999 88
Q ss_pred EEE
Q 024697 103 NCN 105 (264)
Q Consensus 103 ~V~ 105 (264)
+|+
T Consensus 79 ~V~ 81 (81)
T 2krb_A 79 RVN 81 (81)
T ss_dssp CCC
T ss_pred EeC
Confidence 763
No 126
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=4e-18 Score=135.02 Aligned_cols=81 Identities=16% Similarity=0.212 Sum_probs=71.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH----HHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCcee
Q 024697 28 DTTYTKVFVGGLAWETQSETMR----RYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRA 102 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~----~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l 102 (264)
....++|||+||++++++++|+ ++|++||.|++|.+.+ ++++||||||+|.+.++|++||+.++ ..|.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 4457899999999999999876 6999999999988753 58899999999999999999998865 66999999
Q ss_pred EEEeccCCC
Q 024697 103 NCNLASLGR 111 (264)
Q Consensus 103 ~V~~a~~~~ 111 (264)
+|++|..+.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999997543
No 127
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.1e-18 Score=129.53 Aligned_cols=79 Identities=30% Similarity=0.527 Sum_probs=71.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCceeEEE
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCN 105 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l~V~ 105 (264)
.+...++|||+||+.++++++|+++|++||.|++|+|+++ +|||||+|.+.++|++||+.+ +..|+|++|+|+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999887 789999999999999999885 467999999999
Q ss_pred eccCCC
Q 024697 106 LASLGR 111 (264)
Q Consensus 106 ~a~~~~ 111 (264)
++..+.
T Consensus 95 ~a~~~~ 100 (109)
T 1x4g_A 95 WGKESP 100 (109)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 997654
No 128
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.74 E-value=4.2e-18 Score=145.26 Aligned_cols=82 Identities=27% Similarity=0.392 Sum_probs=75.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEec
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a 107 (264)
...++|||+||++++||++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++ ..+.|+.|+|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 345799999999999999999999999999999999999999999999999999999999999855 6699999999998
Q ss_pred cCC
Q 024697 108 SLG 110 (264)
Q Consensus 108 ~~~ 110 (264)
...
T Consensus 93 ~~~ 95 (213)
T 4f02_A 93 QRD 95 (213)
T ss_dssp CCC
T ss_pred ccc
Confidence 644
No 129
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.74 E-value=2.3e-18 Score=127.38 Aligned_cols=72 Identities=14% Similarity=0.163 Sum_probs=67.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 024697 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (264)
Q Consensus 31 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a~ 108 (264)
...|||+||++++||++|+++|.+||+|++++++. +||||||+|.+.++|++||+.+| ..++||.|+|++|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 56999999999999999999999999999999965 58999999999999999999965 66999999999984
No 130
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.74 E-value=4e-18 Score=126.49 Aligned_cols=79 Identities=24% Similarity=0.471 Sum_probs=64.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEEe
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNL 106 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~ 106 (264)
.....++|||+||++++||++|+++|++||.|++|+|+++ +||||||+|++.++|+++... ...++|++|.|++
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~~-~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCGE-DLIIKGISVHISN 80 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTTC-EEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcCC-CcccCCEEEEEEE
Confidence 4566789999999999999999999999999999999875 699999999999999964432 3347899999999
Q ss_pred ccCCC
Q 024697 107 ASLGR 111 (264)
Q Consensus 107 a~~~~ 111 (264)
|.++.
T Consensus 81 a~~k~ 85 (89)
T 3d2w_A 81 AEPKH 85 (89)
T ss_dssp CC---
T ss_pred cCCCC
Confidence 96543
No 131
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=8.3e-18 Score=124.31 Aligned_cols=77 Identities=30% Similarity=0.516 Sum_probs=69.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCceeEEE
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCN 105 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l~V~ 105 (264)
.....++|||+||++++++++|+++|++||.|++|+|+++ ||||+|.+.++|++||+.+ +..|+|++|+|+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3556789999999999999999999999999999999744 9999999999999999985 466999999999
Q ss_pred eccCCC
Q 024697 106 LASLGR 111 (264)
Q Consensus 106 ~a~~~~ 111 (264)
++..+.
T Consensus 77 ~a~~~~ 82 (90)
T 2dnp_A 77 LSTKGQ 82 (90)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 997654
No 132
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=9.3e-18 Score=124.54 Aligned_cols=77 Identities=25% Similarity=0.445 Sum_probs=69.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEE
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~ 105 (264)
.....++|||+||++++++++|+++|++||.|++|+|+++ ||||+|.+.++|++||+.++ ..|+|+.|+|+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 3556799999999999999999999999999999999744 99999999999999998854 66999999999
Q ss_pred eccCCC
Q 024697 106 LASLGR 111 (264)
Q Consensus 106 ~a~~~~ 111 (264)
++..+.
T Consensus 78 ~a~~~~ 83 (92)
T 2dgt_A 78 LSTSRL 83 (92)
T ss_dssp ESSCCC
T ss_pred EccCCC
Confidence 996553
No 133
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.74 E-value=2.5e-18 Score=133.11 Aligned_cols=79 Identities=13% Similarity=0.029 Sum_probs=69.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEE
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG-~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~ 105 (264)
....++|||+||++++++++|+++|++|| +|+.++|..+ +++|||||+|.+.++|++||+.++ .+|+|+.|+|+
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34568999999999999999999999999 9999988543 479999999999999999998865 56999999999
Q ss_pred eccCC
Q 024697 106 LASLG 110 (264)
Q Consensus 106 ~a~~~ 110 (264)
++...
T Consensus 101 ~a~~~ 105 (111)
T 2jvr_A 101 RDDNP 105 (111)
T ss_dssp ESCC-
T ss_pred ECCCC
Confidence 98643
No 134
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=2e-17 Score=123.38 Aligned_cols=78 Identities=21% Similarity=0.386 Sum_probs=67.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEEecc
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLAS 108 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~a~ 108 (264)
...++|||+||++++++++|+++|++||.|++| +.++.+++ ||||+|.+.++|++||+.++..|+|+.|+|+++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECC
Confidence 345799999999999999999999999999987 66766666 9999999999999999933466999999999886
Q ss_pred CCC
Q 024697 109 LGR 111 (264)
Q Consensus 109 ~~~ 111 (264)
.+.
T Consensus 81 ~~~ 83 (94)
T 2e5g_A 81 QKE 83 (94)
T ss_dssp CSC
T ss_pred cCC
Confidence 443
No 135
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=4.7e-18 Score=131.48 Aligned_cols=80 Identities=24% Similarity=0.350 Sum_probs=71.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCC---CCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEE
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNT---GRSKGYGFVTFREPEAARRACADPTPFIDGRRANCN 105 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~t---g~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~ 105 (264)
...++|||+||++++++++|+++|++||.|+ ++++.++.+ |++||||||+|.+.++|++||+.++ .++|+.|.|.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~-~~~G~~~~~~ 83 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL-EEDGKLYLCV 83 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE-EETTEEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh-hcCCcEEEec
Confidence 3568999999999999999999999999999 888888877 7999999999999999999999873 4889999888
Q ss_pred eccCC
Q 024697 106 LASLG 110 (264)
Q Consensus 106 ~a~~~ 110 (264)
.+...
T Consensus 84 ~~~~~ 88 (114)
T 2dnl_A 84 SSPTI 88 (114)
T ss_dssp CCSSS
T ss_pred cCCCc
Confidence 66433
No 136
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.8e-17 Score=123.21 Aligned_cols=77 Identities=21% Similarity=0.334 Sum_probs=68.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEe
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~ 106 (264)
....++|||+|| ++++++|+++|++||+|++|+|. +++|||||+|.+.++|++||+.++ ..|+|++|+|++
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 446789999996 89999999999999999999984 568999999999999999998865 569999999999
Q ss_pred ccCCCC
Q 024697 107 ASLGRP 112 (264)
Q Consensus 107 a~~~~~ 112 (264)
+..+..
T Consensus 84 a~~~~~ 89 (97)
T 1x5p_A 84 ARKQPM 89 (97)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 976543
No 137
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=4.4e-18 Score=128.37 Aligned_cols=76 Identities=18% Similarity=0.268 Sum_probs=68.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCceeEEEe
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCNL 106 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l~V~~ 106 (264)
....++|||+||+.++++++|+++|++||.|++|+++ +++|||||+|.+.++|++||+.+ +..|+|++|+|++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 3456899999999999999999999999999999997 35889999999999999999884 4669999999999
Q ss_pred ccC
Q 024697 107 ASL 109 (264)
Q Consensus 107 a~~ 109 (264)
++.
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 854
No 138
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=5.2e-18 Score=126.66 Aligned_cols=81 Identities=19% Similarity=0.304 Sum_probs=70.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEE
Q 024697 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (264)
Q Consensus 26 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V 104 (264)
..+...++|||+||+.++++++|+++|++||.|+.+ ..+++++|||||+|.+.++|++||+.++ ..|+|+.|+|
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345567899999999999999999999999988766 2368999999999999999999999765 6699999999
Q ss_pred EeccCCC
Q 024697 105 NLASLGR 111 (264)
Q Consensus 105 ~~a~~~~ 111 (264)
+++..+.
T Consensus 86 ~~a~~~~ 92 (96)
T 1fjc_A 86 YYTGEKG 92 (96)
T ss_dssp EECSSSC
T ss_pred EEcCCCC
Confidence 9996543
No 139
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.73 E-value=6.7e-18 Score=133.21 Aligned_cols=79 Identities=19% Similarity=0.254 Sum_probs=70.3
Q ss_pred cEEEEcCC----CCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCC----HHH----HHHHHh--CCC-CC
Q 024697 32 TKVFVGGL----AWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRE----PEA----ARRACA--DPT-PF 96 (264)
Q Consensus 32 ~~lfVgnL----p~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~----~e~----A~~Ai~--~~~-~~ 96 (264)
++|||+|| +++++|++|+++|+.||+|.+|+++.|+.||+++|||||+|.| .++ |.+||+ .++ ..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 79999999 9999999999999999999999999999999999999999996 433 899988 544 56
Q ss_pred cCCceeEEEeccCC
Q 024697 97 IDGRRANCNLASLG 110 (264)
Q Consensus 97 i~Gr~l~V~~a~~~ 110 (264)
|+|++|+|++....
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999997543
No 140
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.73 E-value=8.2e-18 Score=140.39 Aligned_cols=81 Identities=27% Similarity=0.389 Sum_probs=75.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEec
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a 107 (264)
...++|||+||++++++++|+++|++||.|++|+|+.|+ +++++|||||+|.+.++|++||+.++ ..|+|+.|+|++|
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a 164 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 164 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999999998 89999999999999999999999755 6699999999999
Q ss_pred cCC
Q 024697 108 SLG 110 (264)
Q Consensus 108 ~~~ 110 (264)
...
T Consensus 165 ~~~ 167 (177)
T 2f3j_A 165 ASQ 167 (177)
T ss_dssp SSG
T ss_pred cCC
Confidence 643
No 141
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.73 E-value=9.6e-18 Score=129.39 Aligned_cols=79 Identities=15% Similarity=0.229 Sum_probs=71.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCceeEEEec
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCNLA 107 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l~V~~a 107 (264)
...++|||+||+.++++++|+++|++||.|++|+|+++ ++++|||||+|.+.++|++||+.+ +..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 45689999999999999999999999999999999976 556999999999999999999974 56799999999999
Q ss_pred cCC
Q 024697 108 SLG 110 (264)
Q Consensus 108 ~~~ 110 (264)
..+
T Consensus 83 ~~~ 85 (115)
T 3lqv_A 83 NAN 85 (115)
T ss_dssp CHH
T ss_pred cCC
Confidence 754
No 142
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.73 E-value=7.7e-18 Score=130.62 Aligned_cols=77 Identities=18% Similarity=0.216 Sum_probs=64.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCce-----
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRR----- 101 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~----- 101 (264)
....++|||+||+++++|++|+++|++||+|++|+|++| |||||+|++.++|++||+.++ .+|+|++
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 85 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEE
Confidence 346789999999999999999999999999999999876 899999999999999999854 6799998
Q ss_pred eEEEeccCCC
Q 024697 102 ANCNLASLGR 111 (264)
Q Consensus 102 l~V~~a~~~~ 111 (264)
|+|+.+....
T Consensus 86 i~v~~~~~~~ 95 (115)
T 3beg_B 86 IRVKVDGPRS 95 (115)
T ss_dssp CEEEECC---
T ss_pred EEeccCCCCC
Confidence 7777765433
No 143
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.7e-17 Score=123.62 Aligned_cols=78 Identities=23% Similarity=0.322 Sum_probs=68.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHhhcC--CCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCcee
Q 024697 26 FGDTTYTKVFVGGLAWETQSETMRRYFEQF--GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRA 102 (264)
Q Consensus 26 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~f--G~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l 102 (264)
......++|||+||++++++++|+++|++| |.|++|++. +|||||+|.+.++|++||+.++ ..|+|++|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 344567899999999999999999999999 999999874 5699999999999999999755 66999999
Q ss_pred EEEeccCCC
Q 024697 103 NCNLASLGR 111 (264)
Q Consensus 103 ~V~~a~~~~ 111 (264)
+|+++..+.
T Consensus 82 ~v~~a~~~~ 90 (99)
T 2cpd_A 82 EVTLAKPVD 90 (99)
T ss_dssp EEECCCCCC
T ss_pred EEEECCCCC
Confidence 999996544
No 144
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.72 E-value=6.6e-18 Score=126.20 Aligned_cols=81 Identities=19% Similarity=0.321 Sum_probs=72.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHH----HHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCcee
Q 024697 28 DTTYTKVFVGGLAWETQSETMR----RYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRA 102 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~----~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l 102 (264)
....++|||+||+.++++++|+ ++|++||.|.+|++++ +++++|||||+|.+.++|++||+.+ +..|+|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4567899999999999999999 9999999999999874 5888999999999999999999984 466999999
Q ss_pred EEEeccCCC
Q 024697 103 NCNLASLGR 111 (264)
Q Consensus 103 ~V~~a~~~~ 111 (264)
+|+++..+.
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999997654
No 145
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.3e-18 Score=124.10 Aligned_cols=78 Identities=22% Similarity=0.488 Sum_probs=67.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEEecc
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLAS 108 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~a~ 108 (264)
...++|||+||+++++|++|+++|++||.|++|+|+++ +||||||+|.+.++|++|+.. ...++|++|+|+++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 34689999999999999999999999999999999865 689999999999999876554 344799999999996
Q ss_pred CCCC
Q 024697 109 LGRP 112 (264)
Q Consensus 109 ~~~~ 112 (264)
.+..
T Consensus 77 ~~~~ 80 (88)
T 1wf0_A 77 PKHN 80 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 5543
No 146
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.72 E-value=3.9e-17 Score=154.19 Aligned_cols=83 Identities=24% Similarity=0.512 Sum_probs=76.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEec
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a 107 (264)
...++|||+||+++||+++|+++|++||.|+.|+|+.|+.+++++|||||+|.+.++|++||+.++ .+|+|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 345899999999999999999999999999999999999999999999999999999999998865 6699999999999
Q ss_pred cCCC
Q 024697 108 SLGR 111 (264)
Q Consensus 108 ~~~~ 111 (264)
..+.
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 7543
No 147
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=8.5e-18 Score=124.88 Aligned_cols=77 Identities=18% Similarity=0.331 Sum_probs=66.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCC-EEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC--CCcCCceeEEE
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGE-ILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT--PFIDGRRANCN 105 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~-I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~--~~i~Gr~l~V~ 105 (264)
...++|||+||++++|+++|+++|++||. |..+.+ .++|||||+|.+.++|++||+.++ ..|+|++|+|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-------~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-------LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-------EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-------cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 45689999999999999999999999999 665555 247899999999999999999854 56999999999
Q ss_pred eccCCCC
Q 024697 106 LASLGRP 112 (264)
Q Consensus 106 ~a~~~~~ 112 (264)
++..+..
T Consensus 79 ~a~~~~~ 85 (93)
T 2cqh_A 79 YSVSKKL 85 (93)
T ss_dssp ECCCCCC
T ss_pred EccCccc
Confidence 9976543
No 148
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.5e-17 Score=122.96 Aligned_cols=78 Identities=18% Similarity=0.135 Sum_probs=69.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEE-EEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCceeEEEe
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEA-VVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCNL 106 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v-~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l~V~~ 106 (264)
...++|||+||++++++++|+++|++||.|++| .|++++.+++ |||+|.+.++|++||+.+ +..|+|++|+|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456899999999999999999999999999999 5888876544 999999999999999975 4679999999999
Q ss_pred ccCC
Q 024697 107 ASLG 110 (264)
Q Consensus 107 a~~~ 110 (264)
+..+
T Consensus 89 a~~~ 92 (96)
T 2e44_A 89 IPDE 92 (96)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 9765
No 149
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.71 E-value=4.6e-17 Score=131.45 Aligned_cols=82 Identities=33% Similarity=0.522 Sum_probs=76.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCceeEEE
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCN 105 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l~V~ 105 (264)
.....++|||+||+.++++++|+++|++||.|+++++++|+.+++++|||||+|.+.++|++||+.+ +..|+|++|+|+
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 3456789999999999999999999999999999999999989999999999999999999999975 467999999999
Q ss_pred ecc
Q 024697 106 LAS 108 (264)
Q Consensus 106 ~a~ 108 (264)
+|+
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 985
No 150
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.71 E-value=2.9e-17 Score=132.67 Aligned_cols=81 Identities=23% Similarity=0.359 Sum_probs=72.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhC-CCCCcCCceeE
Q 024697 25 PFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD-PTPFIDGRRAN 103 (264)
Q Consensus 25 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~-~~~~i~Gr~l~ 103 (264)
.......++|||+||++++++++|+++|++||.|++|+|++| ++|||||+|.+.++|++||+. ++..|+|++|+
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR 141 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 344567799999999999999999999999999999999887 589999999999999999997 45679999999
Q ss_pred EEeccCC
Q 024697 104 CNLASLG 110 (264)
Q Consensus 104 V~~a~~~ 110 (264)
|+++..+
T Consensus 142 v~~a~~~ 148 (150)
T 2i2y_A 142 VELSNGE 148 (150)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9999654
No 151
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.7e-17 Score=124.28 Aligned_cols=76 Identities=21% Similarity=0.449 Sum_probs=67.7
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCceeEEE
Q 024697 28 DTTYTKVFVGGLAW-ETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCN 105 (264)
Q Consensus 28 ~~~~~~lfVgnLp~-~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l~V~ 105 (264)
....++|||+||++ ++++++|+++|++||.|++|+|. +|||||+|.+.++|++||+.+ +..++|++|+|+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 45678999999998 99999999999999999999983 789999999999999999984 567999999999
Q ss_pred eccCCC
Q 024697 106 LASLGR 111 (264)
Q Consensus 106 ~a~~~~ 111 (264)
++..+.
T Consensus 79 ~a~~~~ 84 (96)
T 2kvi_A 79 VSSSNA 84 (96)
T ss_dssp EEECCC
T ss_pred EcCcCC
Confidence 997554
No 152
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.71 E-value=1.3e-17 Score=135.33 Aligned_cols=81 Identities=31% Similarity=0.631 Sum_probs=75.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEEeccC
Q 024697 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLASL 109 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~a~~ 109 (264)
..++|||+||+.++++++|+++|++||.|++++|++|+.+++++|||||+|.+.++|++||+.++..|+|++|+|++|.+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEEEEECCC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEEEeecCC
Confidence 46799999999999999999999999999999999999899999999999999999999999555679999999999965
Q ss_pred C
Q 024697 110 G 110 (264)
Q Consensus 110 ~ 110 (264)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 153
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.71 E-value=6e-17 Score=136.77 Aligned_cols=83 Identities=22% Similarity=0.472 Sum_probs=77.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCceeEEEec
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCNLA 107 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l~V~~a 107 (264)
...++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+ +..|+|+.|+|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45589999999999999999999999999999999999989999999999999999999999984 56799999999999
Q ss_pred cCCC
Q 024697 108 SLGR 111 (264)
Q Consensus 108 ~~~~ 111 (264)
..+.
T Consensus 203 ~~~~ 206 (216)
T 2qfj_A 203 VTPP 206 (216)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 7553
No 154
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.71 E-value=1.3e-16 Score=132.95 Aligned_cols=84 Identities=24% Similarity=0.411 Sum_probs=77.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCceeEEEe
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCNL 106 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l~V~~ 106 (264)
....++|||+||+.++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.+ +..|+|+.|+|++
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 456799999999999999999999999999999999999989999999999999999999999984 4669999999999
Q ss_pred ccCCC
Q 024697 107 ASLGR 111 (264)
Q Consensus 107 a~~~~ 111 (264)
+..+.
T Consensus 191 a~~~~ 195 (198)
T 2yh0_A 191 ASVGA 195 (198)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 96543
No 155
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.70 E-value=5e-17 Score=122.29 Aligned_cols=76 Identities=22% Similarity=0.517 Sum_probs=67.8
Q ss_pred CCCCCcEEEEcCCCC-CCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEE
Q 024697 27 GDTTYTKVFVGGLAW-ETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~-~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V 104 (264)
.....++|||+||++ ++++++|+++|++||.|++|+|. +|||||+|.+.++|++||+.++ ..|+|++|+|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345678999999998 99999999999999999999982 7899999999999999999855 6699999999
Q ss_pred EeccCC
Q 024697 105 NLASLG 110 (264)
Q Consensus 105 ~~a~~~ 110 (264)
+++..+
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 998543
No 156
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.70 E-value=5.5e-17 Score=131.14 Aligned_cols=80 Identities=29% Similarity=0.438 Sum_probs=74.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhC-CCCCcCCceeEEEeccC
Q 024697 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD-PTPFIDGRRANCNLASL 109 (264)
Q Consensus 31 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~-~~~~i~Gr~l~V~~a~~ 109 (264)
.++|||+|||.++++++|+++|++||.|.++++++++.+++++|||||+|.+.++|++|++. ++..++|+.|+|.++..
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 47999999999999999999999999999999999998999999999999999999999997 45669999999999865
Q ss_pred C
Q 024697 110 G 110 (264)
Q Consensus 110 ~ 110 (264)
.
T Consensus 82 ~ 82 (167)
T 1fxl_A 82 S 82 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 157
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.70 E-value=5.9e-17 Score=133.42 Aligned_cols=81 Identities=16% Similarity=0.335 Sum_probs=70.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCC--ceeE
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDG--RRAN 103 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~G--r~l~ 103 (264)
......+|||+||++++|+++|+++|++||+|++|+|..++ ++|||||+|++.++|++||+.++ ..|.| ++|+
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 34567789999999999999999999999999999986542 57999999999999999999866 55854 9999
Q ss_pred EEeccCCC
Q 024697 104 CNLASLGR 111 (264)
Q Consensus 104 V~~a~~~~ 111 (264)
|++++.++
T Consensus 118 V~~Ak~~~ 125 (164)
T 1sjr_A 118 IDFSKLTS 125 (164)
T ss_dssp EEECSSSS
T ss_pred EEEecCCc
Confidence 99997653
No 158
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.70 E-value=3.1e-18 Score=137.38 Aligned_cols=87 Identities=21% Similarity=0.368 Sum_probs=71.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEE--E---eecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCce
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAV--V---ITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRR 101 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~--v---~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~ 101 (264)
....++|||+||++++|+++|+++|++||.|.+|. + ++...+++++|||||+|.+.++|++||+.++ ..|+|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 44568999999999999999999999999998751 1 1112369999999999999999999999855 6699999
Q ss_pred eEEEeccCCCCCC
Q 024697 102 ANCNLASLGRPRP 114 (264)
Q Consensus 102 l~V~~a~~~~~~~ 114 (264)
|+|.+|.....+.
T Consensus 122 l~V~~a~~~~~~~ 134 (143)
T 3egn_A 122 MVVQFARSARPKQ 134 (143)
T ss_dssp CEEEECCCSCC--
T ss_pred EEEEECCCCCCcc
Confidence 9999997655443
No 159
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.70 E-value=4.4e-17 Score=132.17 Aligned_cols=82 Identities=24% Similarity=0.343 Sum_probs=75.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCceeEEEecc
Q 024697 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCNLAS 108 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l~V~~a~ 108 (264)
..++|||+|||.++++++|+++|++||.|++|++++++.+++++|||||+|.+.++|++|++.+ +..++|++|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 3589999999999999999999999999999999999989999999999999999999999874 466999999999996
Q ss_pred CCC
Q 024697 109 LGR 111 (264)
Q Consensus 109 ~~~ 111 (264)
.+.
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 543
No 160
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.7e-17 Score=126.81 Aligned_cols=77 Identities=19% Similarity=0.236 Sum_probs=69.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEe
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~ 106 (264)
+...++|||+||+.++++++|+++|++||.|++|+|++ ++|||||+|.+.++|++||+.++ ..|+|+.|+|++
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999999864 47899999999999999999855 679999999999
Q ss_pred ccCC
Q 024697 107 ASLG 110 (264)
Q Consensus 107 a~~~ 110 (264)
+...
T Consensus 81 a~~~ 84 (111)
T 1whx_A 81 APIG 84 (111)
T ss_dssp EETT
T ss_pred CCCC
Confidence 9754
No 161
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.69 E-value=3.7e-17 Score=132.67 Aligned_cols=79 Identities=30% Similarity=0.729 Sum_probs=74.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEEeccC
Q 024697 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLASL 109 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~a~~ 109 (264)
+.++|||+|||.++|+++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+. ...++|+.|.|.++..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 468999999999999999999999999999999999999999999999999999999999996 4579999999998854
No 162
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.69 E-value=1.6e-17 Score=141.71 Aligned_cols=80 Identities=29% Similarity=0.475 Sum_probs=73.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 024697 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a~ 108 (264)
..++|||+||++++|+++|+++|++||.|++|+|++|+ +.+||||||+|.+.++|++||+.++ .+|+|++|+|++|.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45799999999999999999999999999999999995 5689999999999999999999854 67999999999997
Q ss_pred CCC
Q 024697 109 LGR 111 (264)
Q Consensus 109 ~~~ 111 (264)
.++
T Consensus 180 ~~~ 182 (213)
T 4f02_A 180 SRK 182 (213)
T ss_dssp CHH
T ss_pred CCc
Confidence 543
No 163
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.69 E-value=1e-16 Score=130.75 Aligned_cols=80 Identities=24% Similarity=0.392 Sum_probs=74.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCceeEEEec
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCNLA 107 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l~V~~a 107 (264)
...++|||+||+.++++++|+++|++||.|+++++++++.+++++|||||+|.+.++|++|++.+ +..|+|++|+|++|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 44789999999999999999999999999999999999889999999999999999999999984 56799999999997
Q ss_pred c
Q 024697 108 S 108 (264)
Q Consensus 108 ~ 108 (264)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 164
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.69 E-value=3.4e-17 Score=120.66 Aligned_cols=74 Identities=18% Similarity=0.217 Sum_probs=67.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 024697 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a~ 108 (264)
..++|||+|||+++++++|+++|++| .|++|+|. +++|||||+|.+.++|++||+.++ ..++|++|+|+++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 46799999999999999999999999 99999884 679999999999999999999855 66999999999985
Q ss_pred CC
Q 024697 109 LG 110 (264)
Q Consensus 109 ~~ 110 (264)
.+
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 165
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.68 E-value=1.4e-16 Score=134.63 Aligned_cols=79 Identities=16% Similarity=0.242 Sum_probs=74.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEEeccC
Q 024697 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLASL 109 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~a~~ 109 (264)
..++|||+|||+++++++|+++|++||.|.+|+|+++. +++++|||||+|++.++|++||+.++..|+|+.|.|.++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 45899999999999999999999999999999999987 59999999999999999999999988889999999999854
No 166
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=6.1e-16 Score=121.94 Aligned_cols=78 Identities=14% Similarity=0.151 Sum_probs=66.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccce-EEEEeCCHHHHHHHHhCCC-CCcCC--ceeE
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGY-GFVTFREPEAARRACADPT-PFIDG--RRAN 103 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~-gFV~F~~~e~A~~Ai~~~~-~~i~G--r~l~ 103 (264)
......|||+||++.+++++|+++|++||+|++|+|... .|| |||+|.+.++|++||+.++ ..|.| +.|+
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~ 95 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLK 95 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEE
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEE
Confidence 344556789999999999999999999999999998652 276 9999999999999999855 66877 6899
Q ss_pred EEeccCCC
Q 024697 104 CNLASLGR 111 (264)
Q Consensus 104 V~~a~~~~ 111 (264)
|++|+.+.
T Consensus 96 V~~Ak~~~ 103 (124)
T 2e5i_A 96 IEYARPTR 103 (124)
T ss_dssp EECCSCSC
T ss_pred EEEecCCc
Confidence 99996553
No 167
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=7.5e-17 Score=125.30 Aligned_cols=76 Identities=18% Similarity=0.270 Sum_probs=66.4
Q ss_pred CCCCcEEEE--cCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCc-----CC
Q 024697 28 DTTYTKVFV--GGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFI-----DG 99 (264)
Q Consensus 28 ~~~~~~lfV--gnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i-----~G 99 (264)
....++||| +||+++++|++|+++|++||+|++|.|+.+ ||||||+|.+.++|++||+.++ ++| .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 345688999 779999999999999999999999988643 7899999999999999999866 556 68
Q ss_pred ceeEEEeccC
Q 024697 100 RRANCNLASL 109 (264)
Q Consensus 100 r~l~V~~a~~ 109 (264)
+.|.|.++..
T Consensus 96 ~~l~v~~a~~ 105 (114)
T 2cq2_A 96 ITLYLNFVEK 105 (114)
T ss_dssp EECEEEEESC
T ss_pred cEEEEEeccc
Confidence 9999999863
No 168
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.67 E-value=1.4e-16 Score=134.52 Aligned_cols=83 Identities=29% Similarity=0.443 Sum_probs=73.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhC-CCCCcCCceeEEEe
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD-PTPFIDGRRANCNL 106 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~-~~~~i~Gr~l~V~~ 106 (264)
....++|||+||+.++|+++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+. ++..|+|+.|+|.+
T Consensus 25 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~ 104 (216)
T 2qfj_A 25 LAIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGR 104 (216)
T ss_dssp HHHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEEC
T ss_pred cCcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEec
Confidence 34578999999999999999999999999999999999998999999999999999999999997 45679999999988
Q ss_pred ccCC
Q 024697 107 ASLG 110 (264)
Q Consensus 107 a~~~ 110 (264)
+...
T Consensus 105 ~~~~ 108 (216)
T 2qfj_A 105 PSNI 108 (216)
T ss_dssp CSCC
T ss_pred CCCc
Confidence 7644
No 169
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.66 E-value=4.7e-16 Score=126.09 Aligned_cols=80 Identities=25% Similarity=0.467 Sum_probs=74.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCC--ceeEE
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDG--RRANC 104 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~G--r~l~V 104 (264)
....++|||+||+.++++++|+++|++||.|+++++++++.+++++|||||+|.+.++|++|++.+ +..|+| ++|+|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 346789999999999999999999999999999999999989999999999999999999999985 466877 99999
Q ss_pred Eec
Q 024697 105 NLA 107 (264)
Q Consensus 105 ~~a 107 (264)
++|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 170
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.5e-16 Score=127.15 Aligned_cols=79 Identities=22% Similarity=0.365 Sum_probs=71.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCceeEEEeccCC
Q 024697 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCNLASLG 110 (264)
Q Consensus 32 ~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l~V~~a~~~ 110 (264)
++|||+|||.++|+++|+++|++||.|++|+|++++ +++++|||||+|.+.++|++||+.+ +..+.|+.|+|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 689999999999999999999999999999999997 4889999999999999999999774 46699999999998654
Q ss_pred C
Q 024697 111 R 111 (264)
Q Consensus 111 ~ 111 (264)
.
T Consensus 80 ~ 80 (166)
T 3md3_A 80 Q 80 (166)
T ss_dssp C
T ss_pred C
Confidence 3
No 171
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.65 E-value=2.7e-16 Score=114.88 Aligned_cols=71 Identities=20% Similarity=0.441 Sum_probs=64.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcC----C-------CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhC-CCCC
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQF----G-------EILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD-PTPF 96 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~f----G-------~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~-~~~~ 96 (264)
...++|||+||++++++++|+++|++| | .|.++++.++ ||||||+|.+.++|++|| . ++..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 457899999999999999999999999 8 9999999755 789999999999999999 6 4567
Q ss_pred cCCceeEEEe
Q 024697 97 IDGRRANCNL 106 (264)
Q Consensus 97 i~Gr~l~V~~ 106 (264)
|+|+.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999973
No 172
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.65 E-value=3.4e-16 Score=122.68 Aligned_cols=77 Identities=21% Similarity=0.340 Sum_probs=68.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCceeEEE
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCN 105 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l~V~ 105 (264)
.....++|||+|| ++++++|+++|++||.|++|+|. +++|||||+|.+.++|++||+.+ +..|+|+.|+|+
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999996 69999999999999999999985 46899999999999999999884 567999999999
Q ss_pred eccCCC
Q 024697 106 LASLGR 111 (264)
Q Consensus 106 ~a~~~~ 111 (264)
++..+.
T Consensus 107 ~a~~~~ 112 (121)
T 2bz2_A 107 IARKQP 112 (121)
T ss_dssp ECCSSC
T ss_pred EeCCCC
Confidence 997654
No 173
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.65 E-value=5.5e-16 Score=126.30 Aligned_cols=82 Identities=28% Similarity=0.362 Sum_probs=72.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCC--CccceEEEEeCCHHHHHHHHhCCC-CCcC---CceeE
Q 024697 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTG--RSKGYGFVTFREPEAARRACADPT-PFID---GRRAN 103 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg--~skG~gFV~F~~~e~A~~Ai~~~~-~~i~---Gr~l~ 103 (264)
+.++|||+|||+++|+++|+++|++||.|++|+|++++.++ +++|||||+|.+.++|++||+.++ ..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56899999999999999999999999999999999999876 899999999999999999998754 3443 67788
Q ss_pred EEeccCCC
Q 024697 104 CNLASLGR 111 (264)
Q Consensus 104 V~~a~~~~ 111 (264)
|.++....
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88876443
No 174
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.64 E-value=7e-16 Score=136.09 Aligned_cols=82 Identities=20% Similarity=0.323 Sum_probs=73.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCce
Q 024697 27 GDTTYTKVFVGGLAWETQSETMR----RYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRR 101 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~----~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~ 101 (264)
+....++|||+||++++++++|+ ++|++||.|++|+|++ ++++||||||+|.+.++|++||+.++ ..|.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 45668999999999999999977 8999999999999876 58899999999999999999998855 6699999
Q ss_pred eEEEeccCCC
Q 024697 102 ANCNLASLGR 111 (264)
Q Consensus 102 l~V~~a~~~~ 111 (264)
|+|.++..+.
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999996544
No 175
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.64 E-value=7.7e-16 Score=124.34 Aligned_cols=80 Identities=24% Similarity=0.433 Sum_probs=72.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCce--eEE
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRR--ANC 104 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~--l~V 104 (264)
....++|||+||+.++++++|+++|++||.|++++++.++.+++++|||||+|.+.++|++|++.+ +..|+|+. |+|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 345689999999999999999999999999999999999989999999999999999999999985 46799965 888
Q ss_pred Eec
Q 024697 105 NLA 107 (264)
Q Consensus 105 ~~a 107 (264)
++|
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 176
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.64 E-value=4.1e-16 Score=132.83 Aligned_cols=76 Identities=18% Similarity=0.270 Sum_probs=69.4
Q ss_pred CCcEEEEcCCC-CCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEec
Q 024697 30 TYTKVFVGGLA-WETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLA 107 (264)
Q Consensus 30 ~~~~lfVgnLp-~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a 107 (264)
..++|||+||+ +++|+++|+++|++||.|++|+|++++ ||||||+|.+.++|++||+.++ ..|.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46899999999 899999999999999999999998763 7999999999999999999855 6699999999998
Q ss_pred cCC
Q 024697 108 SLG 110 (264)
Q Consensus 108 ~~~ 110 (264)
..+
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 644
No 177
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.64 E-value=8.4e-16 Score=125.23 Aligned_cols=80 Identities=24% Similarity=0.355 Sum_probs=71.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcC---CceeE
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFID---GRRAN 103 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~---Gr~l~ 103 (264)
....++|||+||+.++|+++|+++|++||.|+++++++++ +|+++|||||+|.+.++|++||+.++ ..+. +++|+
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 3467899999999999999999999999999999999997 59999999999999999999998855 4444 49999
Q ss_pred EEecc
Q 024697 104 CNLAS 108 (264)
Q Consensus 104 V~~a~ 108 (264)
|++|.
T Consensus 171 V~~ad 175 (175)
T 3nmr_A 171 VKFAD 175 (175)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99983
No 178
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.64 E-value=7.2e-16 Score=122.40 Aligned_cols=80 Identities=16% Similarity=0.379 Sum_probs=69.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccce-EEEEeCCHHHHHHHHhCCC-CCcCC--cee
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGY-GFVTFREPEAARRACADPT-PFIDG--RRA 102 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~-gFV~F~~~e~A~~Ai~~~~-~~i~G--r~l 102 (264)
.....-+|||+||++.+|+++|+++|++||+|++|+|..+ .+|| |||+|.+.++|++||+.++ ..|.| +.|
T Consensus 24 ~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~L 98 (130)
T 3zzy_A 24 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 98 (130)
T ss_dssp -CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEE
T ss_pred CCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEE
Confidence 3456678999999999999999999999999999988764 2688 9999999999999999966 55877 899
Q ss_pred EEEeccCCC
Q 024697 103 NCNLASLGR 111 (264)
Q Consensus 103 ~V~~a~~~~ 111 (264)
+|++++.++
T Consensus 99 rI~~ak~~~ 107 (130)
T 3zzy_A 99 RIDFSKLTS 107 (130)
T ss_dssp EEEECSCSS
T ss_pred EEEecCCCc
Confidence 999997553
No 179
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=1.7e-15 Score=113.24 Aligned_cols=70 Identities=23% Similarity=0.331 Sum_probs=61.5
Q ss_pred cEEEEcCCCCCCCHHH----HHHHhhcC-CCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEE
Q 024697 32 TKVFVGGLAWETQSET----MRRYFEQF-GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (264)
Q Consensus 32 ~~lfVgnLp~~vte~~----L~~~F~~f-G~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~ 105 (264)
+.|||+||++++++++ |+++|++| |+|.+| |+ |+|||+|.+.|+|++|++.++ ..|.||+|+|+
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 3499999999999988 55899999 599998 34 999999999999999999865 66999999999
Q ss_pred eccCCC
Q 024697 106 LASLGR 111 (264)
Q Consensus 106 ~a~~~~ 111 (264)
+|..+.
T Consensus 80 ~A~~~s 85 (96)
T 2diu_A 80 FTPKNR 85 (96)
T ss_dssp SSCCSC
T ss_pred ecCCCc
Confidence 997554
No 180
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.60 E-value=3.5e-15 Score=114.19 Aligned_cols=81 Identities=17% Similarity=0.247 Sum_probs=70.1
Q ss_pred CCCcEEEEcCCCC-----CCCHHHHHHHhhcCCCEEEEEEeecCCC-CCccceEEEEeCCHHHHHHHHhCCC-CCcCCce
Q 024697 29 TTYTKVFVGGLAW-----ETQSETMRRYFEQFGEILEAVVITDKNT-GRSKGYGFVTFREPEAARRACADPT-PFIDGRR 101 (264)
Q Consensus 29 ~~~~~lfVgnLp~-----~vte~~L~~~F~~fG~I~~v~v~~d~~t-g~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~ 101 (264)
..++.|+|.||-. +-++++|+++|++||+|++|+|++++.+ ++++||+||+|.+.++|++||+.++ ..++||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3467999999963 2378999999999999999999998754 6899999999999999999999855 6699999
Q ss_pred eEEEeccC
Q 024697 102 ANCNLASL 109 (264)
Q Consensus 102 l~V~~a~~ 109 (264)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999853
No 181
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.60 E-value=1.7e-15 Score=132.13 Aligned_cols=78 Identities=21% Similarity=0.298 Sum_probs=68.7
Q ss_pred CCCCcEEEEcCCCCCC---------CHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCc
Q 024697 28 DTTYTKVFVGGLAWET---------QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFI 97 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~v---------te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i 97 (264)
+...++|||+||+.++ +|++|+++|++||+|++|+|+.+ ||||||+|.+.++|++||+.++ ..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 5678999999999998 79999999999999999999864 7999999999999999999855 557
Q ss_pred ------------CCceeEEEeccCCC
Q 024697 98 ------------DGRRANCNLASLGR 111 (264)
Q Consensus 98 ------------~Gr~l~V~~a~~~~ 111 (264)
+|+.|.|+||....
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999997543
No 182
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.59 E-value=2.5e-16 Score=128.99 Aligned_cols=84 Identities=17% Similarity=0.231 Sum_probs=72.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEEe
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNL 106 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~ 106 (264)
.....++|||+|||.++++++|+++|++||.|.. .++++..+++++|||||+|.+.++|++||+.++..|.|+.|+|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEec
Confidence 4567899999999999999999999999998776 445555679999999999999999999997445679999999999
Q ss_pred ccCCC
Q 024697 107 ASLGR 111 (264)
Q Consensus 107 a~~~~ 111 (264)
+..+.
T Consensus 88 ~~~~~ 92 (175)
T 1fje_B 88 PKGRD 92 (175)
T ss_dssp CCCSS
T ss_pred CCCcc
Confidence 97543
No 183
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.3e-14 Score=111.74 Aligned_cols=80 Identities=20% Similarity=0.298 Sum_probs=67.1
Q ss_pred CCCCcEEEEcCCCCCCC-----------HHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-C
Q 024697 28 DTTYTKVFVGGLAWETQ-----------SETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-P 95 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vt-----------e~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~ 95 (264)
....+.|+|.||-...+ +++|+++|++||.|++|.| .|+ .++|||||+|.+.++|++||+.++ .
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 34678999999954433 6899999999999999955 554 379999999999999999998865 6
Q ss_pred CcCCceeEEEeccCCC
Q 024697 96 FIDGRRANCNLASLGR 111 (264)
Q Consensus 96 ~i~Gr~l~V~~a~~~~ 111 (264)
.|+|+.|+|.++..+.
T Consensus 88 ~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 88 WFGGRQITAQAWDGTT 103 (112)
T ss_dssp EETTEECEEEECCSCC
T ss_pred EECCcEEEEEEeCCCC
Confidence 6999999999996543
No 184
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.58 E-value=3.6e-15 Score=122.07 Aligned_cols=78 Identities=19% Similarity=0.338 Sum_probs=69.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEe
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNL 106 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~ 106 (264)
....++|||+||+.++++++|+++|++||+|..+ ..+++++|||||+|.+.++|++||+.++ ..|+|+.|+|++
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 170 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 170 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEE
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEe
Confidence 4567899999999999999999999999988766 4479999999999999999999999855 679999999999
Q ss_pred ccCC
Q 024697 107 ASLG 110 (264)
Q Consensus 107 a~~~ 110 (264)
|.++
T Consensus 171 a~~k 174 (175)
T 1fje_B 171 TGEK 174 (175)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 9653
No 185
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.58 E-value=1.4e-14 Score=127.66 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=69.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcC-CceeEE
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFID-GRRANC 104 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~-Gr~l~V 104 (264)
.....++|||+||+.++++++|+++|++||.|++|+|+.++ +|||||+|.+.++|++||+.++ ..|+ |+.|+|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 34567899999999999999999999999999999998764 6899999999999999999866 5688 999999
Q ss_pred Eecc
Q 024697 105 NLAS 108 (264)
Q Consensus 105 ~~a~ 108 (264)
++++
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 9984
No 186
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.58 E-value=3.5e-15 Score=132.20 Aligned_cols=82 Identities=20% Similarity=0.324 Sum_probs=73.6
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHhhcCCCEEEEEEeecCC-CCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEE
Q 024697 28 DTTYTKVFVGGLAWE-TQSETMRRYFEQFGEILEAVVITDKN-TGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANC 104 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~-vte~~L~~~F~~fG~I~~v~v~~d~~-tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V 104 (264)
....++|||+||+.+ +++++|+++|++||.|++|+|+++.. |++++|||||+|.+.++|++|| .++ ..|+|+.|.|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 456789999999999 99999999999999999999999886 6999999999999999999999 754 6699999999
Q ss_pred EeccCC
Q 024697 105 NLASLG 110 (264)
Q Consensus 105 ~~a~~~ 110 (264)
.+|.++
T Consensus 286 ~~a~~k 291 (292)
T 2ghp_A 286 SLADKK 291 (292)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999654
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.57 E-value=3e-15 Score=132.11 Aligned_cols=86 Identities=14% Similarity=0.170 Sum_probs=77.8
Q ss_pred CCCCcEEEEcCCCCCC-CHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEE
Q 024697 28 DTTYTKVFVGGLAWET-QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~v-te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~ 105 (264)
....++|||+||+.++ |+++|+++|+.||.|++|+|++|. +|+++|+|||+|.+.++|++||+.++ ..|+|+.|+|.
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 259 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVS 259 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEE
Confidence 3567899999999995 999999999999999999999997 69999999999999999999999854 67999999999
Q ss_pred eccCCCCCC
Q 024697 106 LASLGRPRP 114 (264)
Q Consensus 106 ~a~~~~~~~ 114 (264)
++.++..++
T Consensus 260 ~a~~~~~~~ 268 (284)
T 3smz_A 260 FCAPGPPGR 268 (284)
T ss_dssp ECCSSSCHH
T ss_pred EecCCCccc
Confidence 998766543
No 188
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.57 E-value=8.9e-15 Score=129.10 Aligned_cols=82 Identities=23% Similarity=0.382 Sum_probs=76.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCceeEEEecc
Q 024697 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCNLAS 108 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l~V~~a~ 108 (264)
..++|||+||+.++++++|+++|+.||.|.+++|++|+.+++++|||||+|.+.++|++||+.+ +..|+|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 4579999999999999999999999999999999999999999999999999999999999774 567999999999997
Q ss_pred CCC
Q 024697 109 LGR 111 (264)
Q Consensus 109 ~~~ 111 (264)
.+.
T Consensus 174 ~~~ 176 (284)
T 3smz_A 174 AGQ 176 (284)
T ss_dssp GGG
T ss_pred CCC
Confidence 554
No 189
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.57 E-value=7.3e-15 Score=126.40 Aligned_cols=78 Identities=14% Similarity=0.238 Sum_probs=71.3
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhC-CCCCcCCceeEEE
Q 024697 28 DTTYTKVFVGGLAW-ETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD-PTPFIDGRRANCN 105 (264)
Q Consensus 28 ~~~~~~lfVgnLp~-~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~-~~~~i~Gr~l~V~ 105 (264)
....++|||+||+. ++++++|+++|++||.|++|+|++++ +|||||+|.+.++|++||+. ++..|+|+.|+|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45678999999999 99999999999999999999999885 78999999999999999987 5567999999999
Q ss_pred eccCC
Q 024697 106 LASLG 110 (264)
Q Consensus 106 ~a~~~ 110 (264)
++..+
T Consensus 106 ~a~~~ 110 (229)
T 2adc_A 106 LSKHQ 110 (229)
T ss_dssp CCSCC
T ss_pred EecCc
Confidence 99754
No 190
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=6.7e-14 Score=106.17 Aligned_cols=76 Identities=16% Similarity=0.162 Sum_probs=62.6
Q ss_pred CcEEEEcCCC-------CCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeE
Q 024697 31 YTKVFVGGLA-------WETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRAN 103 (264)
Q Consensus 31 ~~~lfVgnLp-------~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~ 103 (264)
.++|-|.-.. .+++|++|+++|++||+|++|+|+ +++||||||+|++.++|++||+.++ .+.++.|+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~-~~~g~~l~ 83 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV-GLVDNPLK 83 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC-BCSSSBCE
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC-CCCCCeEE
Confidence 4456555332 468999999999999999999997 4679999999999999999999843 37899999
Q ss_pred EEeccCCCC
Q 024697 104 CNLASLGRP 112 (264)
Q Consensus 104 V~~a~~~~~ 112 (264)
|+++..+..
T Consensus 84 V~~a~~~~~ 92 (100)
T 2d9o_A 84 ISWLEGQPQ 92 (100)
T ss_dssp EECSSCCCC
T ss_pred EEEccCCCC
Confidence 999965543
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.54 E-value=8.7e-15 Score=122.39 Aligned_cols=77 Identities=14% Similarity=0.239 Sum_probs=70.0
Q ss_pred CCcEEEEcCCCC-CCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhC-CCCCcCCceeEEEec
Q 024697 30 TYTKVFVGGLAW-ETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD-PTPFIDGRRANCNLA 107 (264)
Q Consensus 30 ~~~~lfVgnLp~-~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~-~~~~i~Gr~l~V~~a 107 (264)
..++|||+||+. ++++++|+++|++||.|++|+|++++ +|||||+|.+.++|++||+. ++..|+|+.|+|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 358999999999 99999999999999999999998875 78999999999999999997 556799999999999
Q ss_pred cCCC
Q 024697 108 SLGR 111 (264)
Q Consensus 108 ~~~~ 111 (264)
....
T Consensus 77 ~~~~ 80 (198)
T 1qm9_A 77 KHQN 80 (198)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 7543
No 192
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.53 E-value=2.5e-14 Score=116.45 Aligned_cols=75 Identities=19% Similarity=0.368 Sum_probs=65.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcC----C-------CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcC
Q 024697 30 TYTKVFVGGLAWETQSETMRRYFEQF----G-------EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFID 98 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte~~L~~~F~~f----G-------~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~ 98 (264)
+.++|||+|||.++|+++|+++|++| | .|.++++. +++|||||+|.+.++|++||+.++..|+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHGGGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHHHhCCcEec
Confidence 56899999999999999999999999 6 77777774 4489999999999999999944557799
Q ss_pred CceeEEEeccCC
Q 024697 99 GRRANCNLASLG 110 (264)
Q Consensus 99 Gr~l~V~~a~~~ 110 (264)
|+.|+|.++...
T Consensus 77 g~~i~v~~~~~~ 88 (172)
T 2g4b_A 77 GQSLKIRRPHDY 88 (172)
T ss_dssp TEECEEECCSSC
T ss_pred CceeeecCCccc
Confidence 999999987544
No 193
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.53 E-value=1.8e-14 Score=126.36 Aligned_cols=82 Identities=27% Similarity=0.309 Sum_probs=73.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCC-cC---CceeEE
Q 024697 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPF-ID---GRRANC 104 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~-i~---Gr~l~V 104 (264)
..++|||+||+.++|+++|+++|+.||.|++|+|++|. +|+++|||||+|.+.++|.+||+.+ +.. +. +++|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD-RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC-CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 35799999999999999999999999999999999994 8999999999999999999999996 433 33 999999
Q ss_pred EeccCCCC
Q 024697 105 NLASLGRP 112 (264)
Q Consensus 105 ~~a~~~~~ 112 (264)
+++...+.
T Consensus 174 ~~~~~~~~ 181 (261)
T 3sde_A 174 EPMEQFDD 181 (261)
T ss_dssp EECCCEES
T ss_pred eeccccCc
Confidence 99975543
No 194
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.52 E-value=2.2e-14 Score=127.06 Aligned_cols=82 Identities=15% Similarity=0.207 Sum_probs=68.6
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeE
Q 024697 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRAN 103 (264)
Q Consensus 24 ~~~~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~ 103 (264)
.+..+...++|||+|||.++|+++|+++|+.||.|.+|+|++|+. .++|||||+|.+.++|++||+.++..|+|+.|.
T Consensus 34 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i~ 111 (292)
T 2ghp_A 34 ALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK--KNFRFARIEFARYDGALAAITKTHKVVGQNEII 111 (292)
T ss_dssp --------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT--SSSEEEEEEESSHHHHHHHHTTTTCEETTEECE
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC--CCcEEEEEEECCHHHHHHHHHhCCcEeCCcEEE
Confidence 445567789999999999999999999999999999999999874 358999999999999999997555779999999
Q ss_pred EEec
Q 024697 104 CNLA 107 (264)
Q Consensus 104 V~~a 107 (264)
|.++
T Consensus 112 v~~~ 115 (292)
T 2ghp_A 112 VSHL 115 (292)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9987
No 195
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.52 E-value=3.4e-14 Score=124.65 Aligned_cols=77 Identities=27% Similarity=0.473 Sum_probs=69.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcCCceeEEE
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFIDGRRANCN 105 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~Gr~l~V~ 105 (264)
.....++|||+|||.++|+++|+++|++||.|.+|+|.++ +|||||+|.+.++|++||+.+ +..|+|+.|+|.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 3456789999999999999999999999999999999654 789999999999999999974 567999999999
Q ss_pred eccC
Q 024697 106 LASL 109 (264)
Q Consensus 106 ~a~~ 109 (264)
++..
T Consensus 92 ~a~~ 95 (261)
T 3sde_A 92 FATH 95 (261)
T ss_dssp ECCC
T ss_pred eccc
Confidence 9853
No 196
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.51 E-value=3.2e-14 Score=118.36 Aligned_cols=76 Identities=18% Similarity=0.375 Sum_probs=64.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcC----C-------CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcC
Q 024697 30 TYTKVFVGGLAWETQSETMRRYFEQF----G-------EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFID 98 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte~~L~~~F~~f----G-------~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~ 98 (264)
..++|||+|||+++|+++|+++|++| | .|.++++ ++++|||||+|.+.++|++||+.++..|+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAMAFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHGGGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHHHhcCCEEc
Confidence 46899999999999999999999999 5 5666665 55689999999999999999944556799
Q ss_pred CceeEEEeccCCC
Q 024697 99 GRRANCNLASLGR 111 (264)
Q Consensus 99 Gr~l~V~~a~~~~ 111 (264)
|+.|+|.++....
T Consensus 77 g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 77 GQSLKIRRPHDYQ 89 (198)
T ss_dssp TEEEEEECCCCCC
T ss_pred CceEEEeCCCCCC
Confidence 9999999986553
No 197
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.50 E-value=1.8e-14 Score=122.63 Aligned_cols=77 Identities=10% Similarity=0.076 Sum_probs=66.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCE--EEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCc----e
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEI--LEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGR----R 101 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I--~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr----~ 101 (264)
...++|||+||++++||++|+++|++||.| ++++|+.++ ++++|+|||+|.+.++|++||+.++ ..|+|+ +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 346799999999999999999999999999 899998885 5667999999999999999999865 558776 5
Q ss_pred eEEEec
Q 024697 102 ANCNLA 107 (264)
Q Consensus 102 l~V~~a 107 (264)
+.|+++
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 677665
No 198
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.48 E-value=9.6e-15 Score=111.46 Aligned_cols=71 Identities=25% Similarity=0.429 Sum_probs=62.7
Q ss_pred EcCCCCCCCHHHHHHHh------------hcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCcee
Q 024697 36 VGGLAWETQSETMRRYF------------EQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRA 102 (264)
Q Consensus 36 VgnLp~~vte~~L~~~F------------~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l 102 (264)
+.+|++++++++|+++| ++||+|++|+|++++. ++++|||||+|.+.++|++|++.++ ..++||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56788888888887777 9999999999999874 8999999999999999999999855 66999999
Q ss_pred EEEec
Q 024697 103 NCNLA 107 (264)
Q Consensus 103 ~V~~a 107 (264)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 199
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.48 E-value=1.1e-13 Score=118.96 Aligned_cols=76 Identities=9% Similarity=0.138 Sum_probs=68.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcC-CceeEEE
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFID-GRRANCN 105 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG-~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~-Gr~l~V~ 105 (264)
...++|||+||+.++++++|+++|++|| +|++|+|+.+ ++|||||+|.+.++|++||+.+ +..|+ |+.|+|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 3468999999999999999999999999 9999999664 3789999999999999999984 46688 9999999
Q ss_pred eccC
Q 024697 106 LASL 109 (264)
Q Consensus 106 ~a~~ 109 (264)
++++
T Consensus 224 ~a~~ 227 (229)
T 2adc_A 224 FSKS 227 (229)
T ss_dssp ECSS
T ss_pred EecC
Confidence 9864
No 200
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.47 E-value=6.5e-14 Score=117.02 Aligned_cols=76 Identities=9% Similarity=0.138 Sum_probs=68.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC-CCCcC-CceeEEE
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP-TPFID-GRRANCN 105 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG-~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~-~~~i~-Gr~l~V~ 105 (264)
...++|||+||+.++++++|+++|++|| .|++|+|+.+. +|+|||+|.+.++|++||+.+ +..|+ |+.|+|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 3478999999999999999999999999 99999997652 789999999999999999984 46688 9999999
Q ss_pred eccC
Q 024697 106 LASL 109 (264)
Q Consensus 106 ~a~~ 109 (264)
++++
T Consensus 193 ~a~~ 196 (198)
T 1qm9_A 193 FSKS 196 (198)
T ss_dssp EECC
T ss_pred eecc
Confidence 9854
No 201
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.47 E-value=8.3e-14 Score=106.42 Aligned_cols=81 Identities=14% Similarity=0.068 Sum_probs=68.3
Q ss_pred CCCcEEEEcCC--CCCCC--------HHHHHHHhhcCCCEEEEEEeecCCC--CCccceEEEEeCCHHHHHHHHhCCC-C
Q 024697 29 TTYTKVFVGGL--AWETQ--------SETMRRYFEQFGEILEAVVITDKNT--GRSKGYGFVTFREPEAARRACADPT-P 95 (264)
Q Consensus 29 ~~~~~lfVgnL--p~~vt--------e~~L~~~F~~fG~I~~v~v~~d~~t--g~skG~gFV~F~~~e~A~~Ai~~~~-~ 95 (264)
..++.|.|.|+ +.++. +++|++.|++||.|++|+|++++.+ ++++|++||+|.+.++|++||+.+| .
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35678899987 33333 3689999999999999999998764 4689999999999999999999965 6
Q ss_pred CcCCceeEEEeccC
Q 024697 96 FIDGRRANCNLASL 109 (264)
Q Consensus 96 ~i~Gr~l~V~~a~~ 109 (264)
.++||.|.|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 69999999998753
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.43 E-value=2.8e-13 Score=105.74 Aligned_cols=79 Identities=13% Similarity=0.199 Sum_probs=68.1
Q ss_pred CCcEEEEcCCCC--C---CCHHHHHHHhhcCCCEEEEEEeecCC----CCCccceEEEEeCCHHHHHHHHhCCC-CCcCC
Q 024697 30 TYTKVFVGGLAW--E---TQSETMRRYFEQFGEILEAVVITDKN----TGRSKGYGFVTFREPEAARRACADPT-PFIDG 99 (264)
Q Consensus 30 ~~~~lfVgnLp~--~---vte~~L~~~F~~fG~I~~v~v~~d~~----tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~G 99 (264)
.++.|+|.|+-. + --+++|++.|++||+|++|+|++++. +++++|++||+|.+.++|++||+.++ ..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 468899999832 1 23689999999999999999999864 46789999999999999999999965 66999
Q ss_pred ceeEEEecc
Q 024697 100 RRANCNLAS 108 (264)
Q Consensus 100 r~l~V~~a~ 108 (264)
|.|.|.++.
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999984
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.37 E-value=5.4e-13 Score=122.00 Aligned_cols=75 Identities=17% Similarity=0.252 Sum_probs=62.6
Q ss_pred CCCCcEEEEcC--CCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCc---CCc-
Q 024697 28 DTTYTKVFVGG--LAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFI---DGR- 100 (264)
Q Consensus 28 ~~~~~~lfVgn--Lp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i---~Gr- 100 (264)
....++|||+| |+.++||++|+++|++||+|++|++.. +||||||+|++.++|++||+.+| +++ .|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45678999999 588999999999999999999987743 47999999999999999999966 444 345
Q ss_pred -eeEEEecc
Q 024697 101 -RANCNLAS 108 (264)
Q Consensus 101 -~l~V~~a~ 108 (264)
.|+|+++.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 57888773
No 204
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=3e-11 Score=94.45 Aligned_cols=82 Identities=15% Similarity=0.168 Sum_probs=70.7
Q ss_pred CCCCCCCCCCCcEEEEcCCCCC-CCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCC-HHHHHHHHhCCC---C
Q 024697 21 YLNSPFGDTTYTKVFVGGLAWE-TQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFRE-PEAARRACADPT---P 95 (264)
Q Consensus 21 ~~~~~~~~~~~~~lfVgnLp~~-vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~-~e~A~~Ai~~~~---~ 95 (264)
+..........+.|+|+||+++ +++++|+++|++||+|..|+++++.. .|||+|.+ .++|.+||+.++ .
T Consensus 8 ~~~~~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~ 81 (121)
T 1owx_A 8 HHHGSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNL 81 (121)
T ss_dssp -CCCCCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCB
T ss_pred cccCcccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCc
Confidence 3445566788999999999999 99999999999999999999999865 69999999 899999998753 4
Q ss_pred CcCCceeEEEecc
Q 024697 96 FIDGRRANCNLAS 108 (264)
Q Consensus 96 ~i~Gr~l~V~~a~ 108 (264)
+|+|..+.+++..
T Consensus 82 ~i~g~~~~~evL~ 94 (121)
T 1owx_A 82 QLRNKEVTWEVLE 94 (121)
T ss_dssp CTTSSSEEEEECC
T ss_pred EEeCcEEEEEECC
Confidence 5999999988764
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.22 E-value=2e-11 Score=94.55 Aligned_cols=76 Identities=12% Similarity=0.131 Sum_probs=61.3
Q ss_pred CCcEEEEcCCCCCC----------CHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcC
Q 024697 30 TYTKVFVGGLAWET----------QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFID 98 (264)
Q Consensus 30 ~~~~lfVgnLp~~v----------te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~ 98 (264)
.++.|.|.|+=..- -+++|++.|++||.|++|+|.++. ++|++||+|.+.++|++||+.+| ..++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34567777763221 235889999999999999997663 48999999999999999999965 6699
Q ss_pred CceeEEEeccC
Q 024697 99 GRRANCNLASL 109 (264)
Q Consensus 99 Gr~l~V~~a~~ 109 (264)
||.|+|+++..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999853
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=2.8e-10 Score=84.14 Aligned_cols=72 Identities=22% Similarity=0.188 Sum_probs=58.4
Q ss_pred CcEEEEcCCC----CCCCH----HHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCcee
Q 024697 31 YTKVFVGGLA----WETQS----ETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRA 102 (264)
Q Consensus 31 ~~~lfVgnLp----~~vte----~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l 102 (264)
..+|+|.-++ .++-+ .+|.+.|++||+|..++++.|+ +||+|.+.++|.+||+.++..|+||.|
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~mnG~~v~Gr~L 78 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLSLNGKELLNRTI 78 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGGGTTCEETTEEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHhcCCeEeCCeEE
Confidence 3577777655 23333 5789999999999999999884 799999999999999944466999999
Q ss_pred EEEeccCC
Q 024697 103 NCNLASLG 110 (264)
Q Consensus 103 ~V~~a~~~ 110 (264)
+|+++++.
T Consensus 79 kV~lkt~d 86 (91)
T 2dnr_A 79 TIALKSPS 86 (91)
T ss_dssp EEEECCCS
T ss_pred EEEeCCCC
Confidence 99998643
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.91 E-value=3e-09 Score=90.70 Aligned_cols=66 Identities=14% Similarity=0.229 Sum_probs=58.4
Q ss_pred CCHHHHHHHhhcCCCEEEEEEeecC----CCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEEecc
Q 024697 43 TQSETMRRYFEQFGEILEAVVITDK----NTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCNLAS 108 (264)
Q Consensus 43 vte~~L~~~F~~fG~I~~v~v~~d~----~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~~a~ 108 (264)
-.+++|++.|++||+|++++|.++. .+++++|++||+|.+.++|++||+.++ ..++||.|.|.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 4578999999999999999998654 445899999999999999999999955 66999999999975
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=2.5e-09 Score=79.45 Aligned_cols=71 Identities=15% Similarity=0.118 Sum_probs=58.6
Q ss_pred CCcEEEEcCCCCC------CCH---HHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCc
Q 024697 30 TYTKVFVGGLAWE------TQS---ETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGR 100 (264)
Q Consensus 30 ~~~~lfVgnLp~~------vte---~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr 100 (264)
...+|+|.-++.+ .++ .+|.+.|+.||+|..++++.|+ +||+|.+.++|.+||+.++..|+||
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~ldG~~v~Gr 85 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLDVDGMKVKGR 85 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHHGGGSEETTE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHhcCCeeeCCe
Confidence 3468889877643 232 4688999999999999999984 8999999999999999444679999
Q ss_pred eeEEEecc
Q 024697 101 RANCNLAS 108 (264)
Q Consensus 101 ~l~V~~a~ 108 (264)
.|+|++..
T Consensus 86 ~L~V~~k~ 93 (95)
T 1ufw_A 86 AVKISGPS 93 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEeccC
Confidence 99999864
No 209
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=7.7e-06 Score=61.47 Aligned_cols=78 Identities=28% Similarity=0.312 Sum_probs=65.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhc-----CCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEE
Q 024697 31 YTKVFVGGLAWETQSETMRRYFEQ-----FGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCN 105 (264)
Q Consensus 31 ~~~lfVgnLp~~vte~~L~~~F~~-----fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~ 105 (264)
.++|.|.|||.+++++.|+-+|+. =|+|++++... +-|+|+|.+.+.|++.|+...+.|++.+|.|.
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQLSLR 79 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEEEEE
Confidence 379999999999999999999987 26888887643 47899999999999999998889999999998
Q ss_pred eccCCCCCCcc
Q 024697 106 LASLGRPRPQV 116 (264)
Q Consensus 106 ~a~~~~~~~~~ 116 (264)
.......++-.
T Consensus 80 P~~~~~~~r~l 90 (104)
T 2dhx_A 80 PAPPRAPARLL 90 (104)
T ss_dssp ECCCCCCCCCC
T ss_pred cCCCCCcceEe
Confidence 87665554433
No 210
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.30 E-value=1.5e-06 Score=66.01 Aligned_cols=74 Identities=11% Similarity=0.143 Sum_probs=64.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHhhcC-----CCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhC-CCCCcCCce
Q 024697 28 DTTYTKVFVGGLAWETQSETMRRYFEQF-----GEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD-PTPFIDGRR 101 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~L~~~F~~f-----G~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~-~~~~i~Gr~ 101 (264)
++..++|-+=|||+.++++.|+.+++++ |.|+.+.+..|. +-|+|+|.|...|-||.-. ++.+|+||+
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 4456788888999999999999999999 999999998884 4899999999999998865 557799999
Q ss_pred eEEEec
Q 024697 102 ANCNLA 107 (264)
Q Consensus 102 l~V~~a 107 (264)
|+|.-.
T Consensus 92 Lr~gTv 97 (117)
T 2l9w_A 92 IRSGTI 97 (117)
T ss_dssp EEEECH
T ss_pred EEecCH
Confidence 999743
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.66 E-value=0.0002 Score=53.92 Aligned_cols=75 Identities=9% Similarity=0.012 Sum_probs=62.1
Q ss_pred CCcEEEEcCCCCCC-C----HHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCC-cCCceeE
Q 024697 30 TYTKVFVGGLAWET-Q----SETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPF-IDGRRAN 103 (264)
Q Consensus 30 ~~~~lfVgnLp~~v-t----e~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~-i~Gr~l~ 103 (264)
-.++|+|.||+.+| + .+.++++|..|+++......+.-. -..|.|.+.++|.+|-.++++. ++|++|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 35789999998876 2 256799999999999888777632 5689999999999999998765 9999999
Q ss_pred EEeccCC
Q 024697 104 CNLASLG 110 (264)
Q Consensus 104 V~~a~~~ 110 (264)
|-++...
T Consensus 78 ~YFgq~~ 84 (104)
T 1wey_A 78 LYFAQTL 84 (104)
T ss_dssp EECCCCS
T ss_pred EEecCCC
Confidence 9998743
No 212
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.56 E-value=0.00028 Score=54.40 Aligned_cols=74 Identities=18% Similarity=0.207 Sum_probs=58.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCC-ceeEEE
Q 024697 27 GDTTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDG-RRANCN 105 (264)
Q Consensus 27 ~~~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~G-r~l~V~ 105 (264)
+....+.|.|-+.+.+. .+.|.+.|++||+|++..... ...+-.|.|+++.+|++||.+++..|++ -.|=|.
T Consensus 20 ~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVK 92 (119)
T ss_dssp -CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEE
T ss_pred CCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEE
Confidence 34567899999999985 566777899999999987622 2358899999999999999999888875 556666
Q ss_pred ec
Q 024697 106 LA 107 (264)
Q Consensus 106 ~a 107 (264)
..
T Consensus 93 p~ 94 (119)
T 1wwh_A 93 PC 94 (119)
T ss_dssp EC
T ss_pred EC
Confidence 54
No 213
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.32 E-value=0.00092 Score=49.63 Aligned_cols=54 Identities=24% Similarity=0.381 Sum_probs=45.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhC
Q 024697 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~ 92 (264)
..+.++| ++|.++...||.++|+.||.| .|+.+.|. .|||.|.+++.|..|+..
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~ 68 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNT 68 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 3456666 999999999999999999954 46666664 899999999999999875
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.92 E-value=0.0013 Score=48.96 Aligned_cols=52 Identities=23% Similarity=0.391 Sum_probs=44.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhC
Q 024697 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD 92 (264)
Q Consensus 32 ~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~ 92 (264)
+.++| ++|.++...||.++|+.|| -..|+.+.|. .|||.|.+++.|..|+..
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~ 58 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNT 58 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHh
Confidence 45566 9999999999999999999 4567777774 899999999999999884
No 215
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.65 E-value=0.007 Score=44.40 Aligned_cols=65 Identities=11% Similarity=0.060 Sum_probs=52.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCC--ccceEEEEeCCHHHHHHHHhC-CCCC
Q 024697 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGR--SKGYGFVTFREPEAARRACAD-PTPF 96 (264)
Q Consensus 32 ~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~--skG~gFV~F~~~e~A~~Ai~~-~~~~ 96 (264)
+||-|.+||..+||+++.+.++...++.....+..+.+.+ .-.-|+|.|.+.|++....+. +++.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~ 69 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYV 69 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcE
Confidence 6899999999999999999999988877766666543322 236789999999999998887 4444
No 216
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.39 E-value=0.0039 Score=48.74 Aligned_cols=77 Identities=19% Similarity=0.306 Sum_probs=55.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCEEEE-EEeecC--------CCC-----CccceEEEEeCCHHHHHHHHhCCCCC
Q 024697 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEA-VVITDK--------NTG-----RSKGYGFVTFREPEAARRACADPTPF 96 (264)
Q Consensus 31 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v-~v~~d~--------~tg-----~skG~gFV~F~~~e~A~~Ai~~~~~~ 96 (264)
...|.|-+.|.+. ...+.+.|++||.|++- .+.++. .+. ....+-.|+|++..+|++||.+++.+
T Consensus 7 e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 3567777887775 45666789999999872 221100 001 12467799999999999999999999
Q ss_pred cCCceeEEEecc
Q 024697 97 IDGRRANCNLAS 108 (264)
Q Consensus 97 i~Gr~l~V~~a~ 108 (264)
|+|..|-|..-+
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999988888764
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.26 E-value=0.0019 Score=60.95 Aligned_cols=58 Identities=19% Similarity=0.271 Sum_probs=44.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC
Q 024697 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP 93 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~ 93 (264)
..++|||. .+.++++++|.+.|++||.|.++..-+++ | -|+.|+|.+.+++.+++...
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g---~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--G---LYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--S---EEEEEECC---CCHHHHSSC
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--C---eEEEEEeCCHHHHHHHHhcc
Confidence 36799997 79999999999999999999998776553 2 59999999999999888663
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.81 E-value=0.008 Score=47.51 Aligned_cols=33 Identities=12% Similarity=0.061 Sum_probs=28.2
Q ss_pred EEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC
Q 024697 60 EAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (264)
Q Consensus 60 ~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~ 94 (264)
.++|+++. .+++|||||+|.+.++|++|++.++
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~ 34 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYA 34 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhc
Confidence 57788885 4799999999999999999997743
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=94.32 E-value=0.02 Score=44.85 Aligned_cols=40 Identities=15% Similarity=0.055 Sum_probs=34.6
Q ss_pred CCCccceEEEEeCCHHHHHHHHhCC-C-CCcCCceeEEEeccC
Q 024697 69 TGRSKGYGFVTFREPEAARRACADP-T-PFIDGRRANCNLASL 109 (264)
Q Consensus 69 tg~skG~gFV~F~~~e~A~~Ai~~~-~-~~i~Gr~l~V~~a~~ 109 (264)
..+.+|+++|+|.+.++|++|++++ + ..|+| .|.|.++..
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 3567999999999999999999886 5 66999 999998754
No 220
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.32 E-value=0.058 Score=39.90 Aligned_cols=64 Identities=9% Similarity=0.000 Sum_probs=45.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCC--ccceEEEEeCCHHHHHHHHhCCC
Q 024697 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGR--SKGYGFVTFREPEAARRACADPT 94 (264)
Q Consensus 31 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~--skG~gFV~F~~~e~A~~Ai~~~~ 94 (264)
.-||.|..||..+||+++.+.++..-++.....+..+.+-+ .-.-|+|.|.+.|+.....+..+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~ 74 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFD 74 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHST
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcC
Confidence 45899999999999999998888765543322222222211 22568999999999999888743
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.17 E-value=1.1 Score=42.51 Aligned_cols=55 Identities=24% Similarity=0.376 Sum_probs=44.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCC
Q 024697 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADP 93 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~ 93 (264)
....++|+ ++..+...+|.++|+.||.+ +|+.+.|. .+||.|.+.+.|..++...
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~ 493 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 493 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHH
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHH
Confidence 45577776 88899999999999999954 55555553 7999999999999988763
No 222
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.65 E-value=19 Score=25.45 Aligned_cols=57 Identities=7% Similarity=0.096 Sum_probs=39.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeC-CHHHHHHHHhCCC
Q 024697 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR-EPEAARRACADPT 94 (264)
Q Consensus 31 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~-~~e~A~~Ai~~~~ 94 (264)
..+|.|. +.-.--...|++.+.+.-.|.++.+-.. .+-+.|++. +.++..++|+..+
T Consensus 20 ~~~l~V~-m~C~~C~~~Ie~aL~~l~GV~~v~vdl~------~~~~~V~~~~~~~~i~~~i~~~G 77 (98)
T 2crl_A 20 TLEFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLE------DQMVLVHTTLPSQEVQALLEGTG 77 (98)
T ss_dssp EEEEEEC-CCSHHHHHHHHHTTTTCTTCCEEEEETT------TTEEEEEESSCHHHHHHHHHTTT
T ss_pred EEEEEEe-eECHHHHHHHHHHHHcCCCceEEEEECC------CCEEEEEEeCCHHHHHHHHHHhC
Confidence 3456676 6666566789999998888888887544 235667764 5677788887754
No 223
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=61.60 E-value=1.7 Score=32.08 Aligned_cols=20 Identities=10% Similarity=0.295 Sum_probs=0.0
Q ss_pred CCCCcEEEEcCCCCCCCHHH
Q 024697 28 DTTYTKVFVGGLAWETQSET 47 (264)
Q Consensus 28 ~~~~~~lfVgnLp~~vte~~ 47 (264)
....++|||+||+.++|++.
T Consensus 94 ~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 94 AKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp --------------------
T ss_pred cCCCCceEeCCCCCCccccc
Confidence 34556899999999999874
No 224
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=58.10 E-value=30 Score=23.17 Aligned_cols=67 Identities=10% Similarity=0.174 Sum_probs=37.7
Q ss_pred EEEEc-CCCCCCCHHHHHHHhhcCC-----CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC-CCcCCceeEEE
Q 024697 33 KVFVG-GLAWETQSETMRRYFEQFG-----EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT-PFIDGRRANCN 105 (264)
Q Consensus 33 ~lfVg-nLp~~vte~~L~~~F~~fG-----~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~-~~i~Gr~l~V~ 105 (264)
+|||. +--..++..+|..++..-+ .|-.++|..+ |.||+-.. +.++++++.+. ..+.|++++|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 45553 2234566677777776544 4556666333 88988865 34666676644 55899999998
Q ss_pred ecc
Q 024697 106 LAS 108 (264)
Q Consensus 106 ~a~ 108 (264)
.+.
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 763
No 225
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=52.06 E-value=28 Score=22.60 Aligned_cols=57 Identities=9% Similarity=0.006 Sum_probs=44.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC
Q 024697 31 YTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (264)
Q Consensus 31 ~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~ 94 (264)
..++.|.++.-.--...|++.+.+ -.|..+.+-.. .+-+.|+|.+.++..++|+..+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~G 62 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAAG 62 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHTT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHcC
Confidence 357889999988888999999999 88888887433 3467788887777788887654
No 226
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=38.40 E-value=5.6 Score=31.22 Aligned_cols=56 Identities=9% Similarity=0.112 Sum_probs=29.2
Q ss_pred HHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCH--------HH---HHHHHhCCC--CCcCCceeEEEeccC
Q 024697 46 ETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREP--------EA---ARRACADPT--PFIDGRRANCNLASL 109 (264)
Q Consensus 46 ~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~--------e~---A~~Ai~~~~--~~i~Gr~l~V~~a~~ 109 (264)
+|+.++|...|.|+.. ...|||+||+-.+. ++ -..+|...+ ..-.|.+|...+...
T Consensus 2 ~~~~~l~~~~G~Vkwf--------n~~kGfGFI~~~~~~g~p~~~g~DvFvH~s~i~~~g~~~l~eG~~V~f~~~~g 70 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWF--------NVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVEFTFKKS 70 (148)
T ss_dssp ----CCEEEEEEEEEE--------ETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCSSSSCCCCTTCEEEEEEEEE
T ss_pred CcccccccceeEEEEE--------ECCCCeeEEeeCccccccCCCCccEEEEhHHhcccCCccCCCCCEEEEEEEEc
Confidence 4566667766666543 22388999997631 11 233444322 235677777666543
No 227
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=37.01 E-value=96 Score=22.69 Aligned_cols=67 Identities=7% Similarity=0.009 Sum_probs=42.1
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHhhc-------CCCEEEEEEeecCCCCCccce--EE-EEeCCHHHHHHHHh
Q 024697 24 SPFGDTTYTKVFVGGLAWETQSETMRRYFEQ-------FGEILEAVVITDKNTGRSKGY--GF-VTFREPEAARRACA 91 (264)
Q Consensus 24 ~~~~~~~~~~lfVgnLp~~vte~~L~~~F~~-------fG~I~~v~v~~d~~tg~skG~--gF-V~F~~~e~A~~Ai~ 91 (264)
......-.+.|.+-.|..++++++++++.+. .-.|+++.+-++.. ++.+|| +| ++|+|.++.+.-..
T Consensus 15 ~~~~~~mI~HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s-~~~~g~d~~l~~~F~s~edl~~Y~~ 91 (116)
T 3bgu_A 15 LYFQGMGIRHIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG-LAAGNYDFAVVADLDGEDGFRAYQD 91 (116)
T ss_dssp CCCSSCEEEEEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS-CSTTCCSEEEEEEEEHHHHHHHHHH
T ss_pred hhcCCCcEEEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC-CCCCCeeEEEEEEECCHHHHHHHhc
Confidence 3334444555555678889888876555543 45678888877753 554554 33 57888887765554
No 228
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=32.82 E-value=1.1e+02 Score=21.39 Aligned_cols=33 Identities=12% Similarity=0.152 Sum_probs=25.7
Q ss_pred CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC
Q 024697 57 EILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (264)
Q Consensus 57 ~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~ 94 (264)
+|.++.+.. ..+||-||+++..++...+|+...
T Consensus 39 ~i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~ 71 (92)
T 3lpe_A 39 DVYSILASE-----SLKGYVLVEAETKGDVEELIKGMP 71 (92)
T ss_dssp CEEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCT
T ss_pred cEEEEEEec-----ccCCEEEEEEecchhHHHHHHCCC
Confidence 366665543 268999999999999999998854
No 229
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=31.99 E-value=63 Score=25.54 Aligned_cols=37 Identities=24% Similarity=0.328 Sum_probs=29.3
Q ss_pred CCHHHHHHHhhcCCCEE---EEEEeecCCCCCccceEEEE
Q 024697 43 TQSETMRRYFEQFGEIL---EAVVITDKNTGRSKGYGFVT 79 (264)
Q Consensus 43 vte~~L~~~F~~fG~I~---~v~v~~d~~tg~skG~gFV~ 79 (264)
.|+++|+++-.+.|++. ++.+..|..+|+.+.+||-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 47999999999999874 55666675479999888763
No 230
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=31.48 E-value=69 Score=27.28 Aligned_cols=46 Identities=22% Similarity=0.411 Sum_probs=34.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCC
Q 024697 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPT 94 (264)
Q Consensus 32 ~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~ 94 (264)
..+.|+|||.+++...|.++++. ..+.++.++.. .|.|++.+...+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~Q----------------kEva~Rl~A~pg 156 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQ----------------KEVAERMTARPK 156 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEE----------------HHHHHHHTCCTT
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEee----------------eeeeeecccCCC
Confidence 46789999999999999999987 66666555443 466777666543
No 231
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=30.97 E-value=1.6e+02 Score=21.64 Aligned_cols=62 Identities=15% Similarity=0.165 Sum_probs=40.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhh-------cCCCEEEEEEeecCCC-CCccce--EE-EEeCCHHHHHHHHh
Q 024697 30 TYTKVFVGGLAWETQSETMRRYFE-------QFGEILEAVVITDKNT-GRSKGY--GF-VTFREPEAARRACA 91 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte~~L~~~F~-------~fG~I~~v~v~~d~~t-g~skG~--gF-V~F~~~e~A~~Ai~ 91 (264)
-.+.|.+-.|..++++++++++.+ +.-.|+++.+-++... ++.++| +| ++|+|.++.+.-..
T Consensus 20 mi~HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y~~ 92 (121)
T 3bb5_A 20 MLYHLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDAYAV 92 (121)
T ss_dssp CEEEEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHHHHH
T ss_pred cEEEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHHHHc
Confidence 344455557888988876555443 4667888888777532 444554 43 68999888766554
No 232
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=30.85 E-value=1.5e+02 Score=21.29 Aligned_cols=71 Identities=13% Similarity=0.111 Sum_probs=52.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhC-CC----C---CcCCc
Q 024697 29 TTYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACAD-PT----P---FIDGR 100 (264)
Q Consensus 29 ~~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~-~~----~---~i~Gr 100 (264)
...|-|-|-|+|..+-..++--.....|----|+.+. |-+.+.|.+.++..-||.. ++ + +|.|.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkllnhnnnklqieirgq 81 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQ 81 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcce
Confidence 4578888999999999888877777777666666543 4789999999998888864 22 2 36676
Q ss_pred eeEEEec
Q 024697 101 RANCNLA 107 (264)
Q Consensus 101 ~l~V~~a 107 (264)
.+.|-..
T Consensus 82 icdvist 88 (129)
T 4eyt_A 82 ICDVIST 88 (129)
T ss_dssp EEEEECC
T ss_pred eeeeeec
Confidence 6666443
No 233
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=30.53 E-value=94 Score=22.69 Aligned_cols=65 Identities=12% Similarity=0.092 Sum_probs=46.6
Q ss_pred CCCCCCCHHHHHHHh-hcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEEeccCC
Q 024697 38 GLAWETQSETMRRYF-EQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLASLG 110 (264)
Q Consensus 38 nLp~~vte~~L~~~F-~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~a~~~ 110 (264)
.++.-+.-++|..-. +.||.-.++..+.+ -..|-..+.||.++||+.++....-+.|+|-+...+
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~--------EllIpl~sQeDLDkaIellDrss~~kSLrIlL~~~~ 88 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRSIHMKSLKILLVING 88 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEECSS--------SSCEECCSHHHHHHHHHHHHHCSSCCSEEEEEEECC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEecc--------eEEEeccCHHHHHHHHHHHccCCcccceEEEEecCC
Confidence 456777777776544 56898888877633 357999999999999999765555666666655433
No 234
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=29.68 E-value=1.6e+02 Score=23.47 Aligned_cols=57 Identities=12% Similarity=0.091 Sum_probs=37.1
Q ss_pred EEEEcCCCC-C--------CCHHHHHHHh--hcCCCEEEEEEeecCCCCCccceEEEEeC-CHHHHHHHHhC
Q 024697 33 KVFVGGLAW-E--------TQSETMRRYF--EQFGEILEAVVITDKNTGRSKGYGFVTFR-EPEAARRACAD 92 (264)
Q Consensus 33 ~lfVgnLp~-~--------vte~~L~~~F--~~fG~I~~v~v~~d~~tg~skG~gFV~F~-~~e~A~~Ai~~ 92 (264)
.+.|-|++. . .+..+|++.| +.|..++ |+.+.++ .-+.|++.|+|. |-.-...|++.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHHH
Confidence 445566665 1 3457899977 8998865 5555664 347899999997 44444555543
No 235
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=28.24 E-value=1.6e+02 Score=20.70 Aligned_cols=55 Identities=16% Similarity=0.090 Sum_probs=36.1
Q ss_pred EcCCCCCCCHHHHHHHhh-------cCCCEEEEEEeecCCCCCccceE---EEEeCCHHHHHHHHh
Q 024697 36 VGGLAWETQSETMRRYFE-------QFGEILEAVVITDKNTGRSKGYG---FVTFREPEAARRACA 91 (264)
Q Consensus 36 VgnLp~~vte~~L~~~F~-------~fG~I~~v~v~~d~~tg~skG~g---FV~F~~~e~A~~Ai~ 91 (264)
+-.|..++++++++++.+ +.-.|+++.+-++.. ++.+||- .++|+|.++.+.-..
T Consensus 10 lfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~-~~~~~~~~~~~~~F~s~e~l~~Y~~ 74 (103)
T 2qyc_A 10 MMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVA-ARSQGYTHATSSAFVDAAAHDAYQV 74 (103)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCC-TTCTTCCEEEEEEESSHHHHHHHTT
T ss_pred EEEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCC-CCCCCccEEEEEEECCHHHHHHHhC
Confidence 335777887766544443 467789998888764 5555543 368899888766554
No 236
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=28.06 E-value=76 Score=22.47 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=21.3
Q ss_pred CEEEEEEeecCCCCCccceEEEEeCC
Q 024697 57 EILEAVVITDKNTGRSKGYGFVTFRE 82 (264)
Q Consensus 57 ~I~~v~v~~d~~tg~skG~gFV~F~~ 82 (264)
+|++++|..-...++-|+||=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888886666568999999999975
No 237
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=27.54 E-value=1.1e+02 Score=22.32 Aligned_cols=49 Identities=16% Similarity=0.310 Sum_probs=29.0
Q ss_pred CCCCHHHHHHHhhc-CC---CEEEE-EEeecCCCCCccceEEEEeCCHHHHHHHH
Q 024697 41 WETQSETMRRYFEQ-FG---EILEA-VVITDKNTGRSKGYGFVTFREPEAARRAC 90 (264)
Q Consensus 41 ~~vte~~L~~~F~~-fG---~I~~v-~v~~d~~tg~skG~gFV~F~~~e~A~~Ai 90 (264)
.+++..+|++-+.+ |+ ++..| .+.+.-..|++.|||.| |+|.+.|++.-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 56778888877754 43 22333 33344334667777755 77777766644
No 238
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=27.35 E-value=31 Score=29.61 Aligned_cols=35 Identities=9% Similarity=0.192 Sum_probs=27.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeec
Q 024697 32 TKVFVGGLAWETQSETMRRYFEQFGEILEAVVITD 66 (264)
Q Consensus 32 ~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d 66 (264)
..+.|+|||..++...|.++++....+.++.++..
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Q 149 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQ 149 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEee
Confidence 45789999999999999999987656666655544
No 239
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=27.26 E-value=94 Score=27.83 Aligned_cols=59 Identities=17% Similarity=0.196 Sum_probs=41.0
Q ss_pred EEEEcCCCCCC----CHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCc
Q 024697 33 KVFVGGLAWET----QSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGR 100 (264)
Q Consensus 33 ~lfVgnLp~~v----te~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr 100 (264)
--+||||..-. -...+.++.++||.|..+++.. .-+|...+.+.++.++......+.++
T Consensus 16 lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~---------~~~vvv~~p~~~k~il~~~~~~f~~r 78 (494)
T 3swz_A 16 LPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGT---------KTTVIVGHHQLAKEVLIKKGKDFSGR 78 (494)
T ss_dssp CCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETT---------EEEEEECSHHHHHHHHTTTTTTTBBC
T ss_pred CCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCC---------CCEEEECCHHHHHHHHHhCcHhhCCC
Confidence 44688876432 2356777888999998887722 34788899999999997754444443
No 240
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=27.11 E-value=23 Score=25.82 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHhhc-CCCEEEEEEeecCCC----CCccceEEEEeCCHHHHHH
Q 024697 41 WETQSETMRRYFEQ-FGEILEAVVITDKNT----GRSKGYGFVTFREPEAARR 88 (264)
Q Consensus 41 ~~vte~~L~~~F~~-fG~I~~v~v~~d~~t----g~skG~gFV~F~~~e~A~~ 88 (264)
.+++..+|++-+.+ |+.-.++.++..-.| |++.|||.| |+|.+.|.+
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 35677887776643 433233333333322 556677654 555555554
No 241
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=26.83 E-value=1.3e+02 Score=19.47 Aligned_cols=59 Identities=12% Similarity=0.156 Sum_probs=43.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceEEEEeC----CHHHHHHHHhCCC
Q 024697 30 TYTKVFVGGLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFR----EPEAARRACADPT 94 (264)
Q Consensus 30 ~~~~lfVgnLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~gFV~F~----~~e~A~~Ai~~~~ 94 (264)
...++.|.++.-..-...|++.+...-.|.++.+-.. .+-..|+|. +.++..++|+..+
T Consensus 9 ~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~G 71 (84)
T 1q8l_A 9 VVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLD------NQEATIVYQPHLISVEEMKKQIEAMG 71 (84)
T ss_dssp EEEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECST------TTEEEEEECTTTCCHHHHHHHHHHTT
T ss_pred eEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHcC
Confidence 3457889999888788889999999888888887443 346778885 3456667776644
No 242
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=25.69 E-value=1.3e+02 Score=21.85 Aligned_cols=47 Identities=9% Similarity=0.143 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHhhc-CC---CEEEE-EEeecCCCCCccceEEEEeCCHHHHHH
Q 024697 41 WETQSETMRRYFEQ-FG---EILEA-VVITDKNTGRSKGYGFVTFREPEAARR 88 (264)
Q Consensus 41 ~~vte~~L~~~F~~-fG---~I~~v-~v~~d~~tg~skG~gFV~F~~~e~A~~ 88 (264)
.+++..+|++-+.+ |+ ++..| .+.+.-..|++.|||.| |+|.+.|++
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 56788888877654 33 22333 34444444677788755 677776654
No 243
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=24.56 E-value=1.2e+02 Score=22.31 Aligned_cols=48 Identities=8% Similarity=0.041 Sum_probs=28.1
Q ss_pred CCCCHHHHHHHhhc-CCC---EEEE-EEeecCCCCCccceEEEEeCCHHHHHHH
Q 024697 41 WETQSETMRRYFEQ-FGE---ILEA-VVITDKNTGRSKGYGFVTFREPEAARRA 89 (264)
Q Consensus 41 ~~vte~~L~~~F~~-fG~---I~~v-~v~~d~~tg~skG~gFV~F~~~e~A~~A 89 (264)
..++..+|++-+.+ |+. +..| .+.+.-..|++.|||.| |+|.+.|.+.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 45678888776653 432 2222 33333334677788755 7777777653
No 244
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=24.34 E-value=77 Score=28.23 Aligned_cols=22 Identities=9% Similarity=0.093 Sum_probs=19.2
Q ss_pred EEEEcCCCCCCCHHHHHHHhhc
Q 024697 33 KVFVGGLAWETQSETMRRYFEQ 54 (264)
Q Consensus 33 ~lfVgnLp~~vte~~L~~~F~~ 54 (264)
-+.|+|||.+++..-|..+++.
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999998888874
No 245
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=24.30 E-value=75 Score=24.22 Aligned_cols=47 Identities=6% Similarity=0.030 Sum_probs=32.1
Q ss_pred EcCCCCCCCHHHHHHHhh-cCC--CEEEEEEeecC----------CCCCccceEEEEeCC
Q 024697 36 VGGLAWETQSETMRRYFE-QFG--EILEAVVITDK----------NTGRSKGYGFVTFRE 82 (264)
Q Consensus 36 VgnLp~~vte~~L~~~F~-~fG--~I~~v~v~~d~----------~tg~skG~gFV~F~~ 82 (264)
|-.+..-++++++++++. ... +|.++.+-... +.....+|-|+.|+|
T Consensus 68 v~~~~~GiSe~~a~~~v~~~~~~~~I~~v~lG~~~~~pVWEV~Y~~~~~~~~Y~~~~F~~ 127 (136)
T 2gu3_A 68 SKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTT 127 (136)
T ss_dssp EEEGGGSCCHHHHHHHHHHTTCCSEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEETTT
T ss_pred EEEHhhCCCHHHHHHHHHHhCCccceeEEeeeeECCEEEEEEEEEccCCcEEEEEEEeeC
Confidence 566788899999999994 444 67777653322 112346788888876
No 246
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=23.82 E-value=97 Score=22.51 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=21.2
Q ss_pred CEEEEEEeecCCCCCccceEEEEeCC
Q 024697 57 EILEAVVITDKNTGRSKGYGFVTFRE 82 (264)
Q Consensus 57 ~I~~v~v~~d~~tg~skG~gFV~F~~ 82 (264)
+|++|+|..-...|+-|+||=|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888886665568999999999975
No 247
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=23.60 E-value=1.3e+02 Score=21.41 Aligned_cols=64 Identities=11% Similarity=0.086 Sum_probs=45.4
Q ss_pred CCCCCCCHHHHHHHh-hcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEEeccC
Q 024697 38 GLAWETQSETMRRYF-EQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLASL 109 (264)
Q Consensus 38 nLp~~vte~~L~~~F-~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~a~~ 109 (264)
-++.-+.-++|..-. ..||.-.++..+.+. -.|-..+.++.++||+.++....-|.|+|-+...
T Consensus 19 ~f~RPvkf~dl~qkv~~afGq~ldl~y~nnE--------L~iPL~~Q~DLDkAvelLDrs~~mkSLRIlL~~~ 83 (94)
T 2jrh_A 19 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNNE--------LSILLKNQDDLDKAIDILDRSSSMKSLRILLLSQ 83 (94)
T ss_dssp EECSSCCHHHHHHHHHHHHCSSEEEEEECSS--------CEEECCSHHHHHHHHHHHHHSTTTTEEEEEEEEC
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecce--------eEEeccCHHHHHHHHHHhccCccccceEEEEEcC
Confidence 345666777776544 568988888776443 3788999999999999876555566666666543
No 248
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=23.29 E-value=42 Score=23.27 Aligned_cols=19 Identities=11% Similarity=0.375 Sum_probs=16.1
Q ss_pred EcCCCCCCCHHHHHHHhhc
Q 024697 36 VGGLAWETQSETMRRYFEQ 54 (264)
Q Consensus 36 VgnLp~~vte~~L~~~F~~ 54 (264)
|=+|+.+.+.++|++.|.+
T Consensus 22 iLgv~~~as~~eIk~ayr~ 40 (88)
T 2cug_A 22 VLGVSRTASQADIKKAYKK 40 (88)
T ss_dssp HHTCCTTCCHHHHHHHHHH
T ss_pred HcCcCCCCCHHHHHHHHHH
Confidence 3478999999999999876
No 249
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=22.94 E-value=1.1e+02 Score=22.56 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=20.8
Q ss_pred CEEEEEEeecCCCCCccceEEEEeCC
Q 024697 57 EILEAVVITDKNTGRSKGYGFVTFRE 82 (264)
Q Consensus 57 ~I~~v~v~~d~~tg~skG~gFV~F~~ 82 (264)
+|++|+|..-...|+-|+||=|+|.+
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 57788776665568999999999975
No 250
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=28.53 E-value=18 Score=26.70 Aligned_cols=58 Identities=14% Similarity=0.189 Sum_probs=35.5
Q ss_pred CCCCCCCHHHHHHHhhcCCCEEEEEEeecCCCCCccceE--EEEeCCHHHHHHHHhCCCCCc
Q 024697 38 GLAWETQSETMRRYFEQFGEILEAVVITDKNTGRSKGYG--FVTFREPEAARRACADPTPFI 97 (264)
Q Consensus 38 nLp~~vte~~L~~~F~~fG~I~~v~v~~d~~tg~skG~g--FV~F~~~e~A~~Ai~~~~~~i 97 (264)
-|-...++++|+++..+.+ +..+.+.+...+|+. -|. +=.|.+.++|.+|++.+-..|
T Consensus 29 QL~a~~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~-WyvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 29 QLSSSSNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 3444456777888777775 344555443323332 232 237899999999999876443
No 251
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=21.12 E-value=1.3e+02 Score=21.72 Aligned_cols=61 Identities=11% Similarity=0.088 Sum_probs=43.8
Q ss_pred CCCCCCCHHHHHHHh-hcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEEe
Q 024697 38 GLAWETQSETMRRYF-EQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNL 106 (264)
Q Consensus 38 nLp~~vte~~L~~~F-~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~ 106 (264)
-++.-+.-++|..-. ..||.-.++..+.+ --.|-..+.++.++||+.++....-+.|+|-+
T Consensus 35 ~f~RPv~f~el~~kv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs~~~kSLrIlL 96 (100)
T 2npt_B 35 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRSIHMKSLKILL 96 (100)
T ss_dssp EECSSCCHHHHHHHHHHHHTSCEEEEEEET--------TEEEECCCHHHHHHHHHHHHHCSSCCSEEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEecccHHHHHHHHHHhccCccccceEEEE
Confidence 456677777777555 56898888887754 34788999999999999866444445555544
No 252
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=20.98 E-value=1.1e+02 Score=22.43 Aligned_cols=62 Identities=10% Similarity=0.086 Sum_probs=43.6
Q ss_pred CCCCCCCHHHHHHHh-hcCCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHhCCCCCcCCceeEEEec
Q 024697 38 GLAWETQSETMRRYF-EQFGEILEAVVITDKNTGRSKGYGFVTFREPEAARRACADPTPFIDGRRANCNLA 107 (264)
Q Consensus 38 nLp~~vte~~L~~~F-~~fG~I~~v~v~~d~~tg~skG~gFV~F~~~e~A~~Ai~~~~~~i~Gr~l~V~~a 107 (264)
-++.-+.-++|+.-. ..||.-.++..+.+. -.|-..+.++.++||+.++....-|.|+|-+.
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~nnE--------L~IPL~~Q~DLDkAvelLDrs~~mkSLRIlL~ 108 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNNE--------LSILLKNQDDLDKAIDILDRSSSMKSLRILLL 108 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEECSS--------CEEECCSHHHHHHHHHHHHHCSSCCSEEEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecce--------EEEecccHHHHHHHHHHhccCccccceEEEEe
Confidence 456667777776554 568888888776543 36888999999999998665545555555443
No 253
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=20.75 E-value=49 Score=17.75 Aligned_cols=12 Identities=25% Similarity=0.761 Sum_probs=10.6
Q ss_pred CHHHHHHHhhcC
Q 024697 44 QSETMRRYFEQF 55 (264)
Q Consensus 44 te~~L~~~F~~f 55 (264)
+|.+|+++.++|
T Consensus 14 nekelrdfiekf 25 (28)
T 1fme_A 14 NEKELRDFIEKF 25 (28)
T ss_dssp CHHHHHHHHHHC
T ss_pred cHHHHHHHHHHh
Confidence 689999999887
No 254
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.49 E-value=49 Score=22.30 Aligned_cols=11 Identities=18% Similarity=0.413 Sum_probs=8.9
Q ss_pred cceEEEEeCCH
Q 024697 73 KGYGFVTFREP 83 (264)
Q Consensus 73 kG~gFV~F~~~ 83 (264)
+..+||.|+|.
T Consensus 37 ~~~ClV~FeD~ 47 (68)
T 2e5p_A 37 REVCLVQFEDD 47 (68)
T ss_dssp TTEEEEEETTT
T ss_pred CcEEEEEEccC
Confidence 56899999874
No 255
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=20.32 E-value=1.4e+02 Score=24.38 Aligned_cols=25 Identities=8% Similarity=0.196 Sum_probs=22.3
Q ss_pred ccceEEEEeCCHHHHHHHHhCCCCC
Q 024697 72 SKGYGFVTFREPEAARRACADPTPF 96 (264)
Q Consensus 72 skG~gFV~F~~~e~A~~Ai~~~~~~ 96 (264)
-|||-|||=.+..++++||+.+...
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~v 172 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDI 172 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhh
Confidence 5899999999999999999996654
Done!