Your job contains 1 sequence.
>024698
MAAVADMPGDAAAANNTNNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQ
HTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVY
VSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTML
GYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGG
EVRTLPCMIILFYFHLFIYYFLVI
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 024698
(264 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2091657 - symbol:CID9 "CTC-interacting domain ... 741 2.2e-73 1
TAIR|locus:2024842 - symbol:CID8 "CTC-interacting domain ... 709 5.5e-70 1
TAIR|locus:2035629 - symbol:CID11 "CTC-interacting domain... 625 4.3e-61 1
TAIR|locus:2139242 - symbol:CID12 "CTC-interacting domain... 619 1.9e-60 1
TAIR|locus:2082961 - symbol:CID10 "CTC-interacting domain... 615 5.0e-60 1
TAIR|locus:2184022 - symbol:CID13 "CTC-interacting domain... 515 2.0e-49 1
MGI|MGI:2145245 - symbol:Srek1 "splicing regulatory gluta... 156 1.8e-10 1
RGD|621696 - symbol:Srek1 "splicing regulatory glutamine/... 156 1.8e-10 1
UNIPROTKB|Q9JKL7 - symbol:Srek1 "Splicing regulatory glut... 156 1.8e-10 1
UNIPROTKB|Q8WXA9 - symbol:SREK1 "Splicing regulatory glut... 156 1.9e-10 1
UNIPROTKB|E2R749 - symbol:SREK1 "Uncharacterized protein"... 156 1.9e-10 1
UNIPROTKB|J9P0H2 - symbol:SREK1 "Uncharacterized protein"... 156 2.7e-10 1
ZFIN|ZDB-GENE-040801-132 - symbol:srek1 "splicing regulat... 155 5.1e-10 1
POMBASE|SPBC16E9.12c - symbol:pab2 "poly(A) binding prote... 126 4.1e-08 1
UNIPROTKB|F1NA16 - symbol:Gga.54187 "Uncharacterized prot... 143 8.3e-08 1
ZFIN|ZDB-GENE-080709-5 - symbol:pabpn1l "poly(A) binding ... 123 2.4e-06 1
WB|WBGene00011155 - symbol:R09B3.2 species:6239 "Caenorha... 105 1.2e-05 1
UNIPROTKB|H0YEQ8 - symbol:PABPC4 "Polyadenylate-binding p... 99 5.6e-05 1
UNIPROTKB|Q804A5 - symbol:Pabpn1l-a "Embryonic polyadenyl... 114 6.7e-05 1
TAIR|locus:2009036 - symbol:PAB1 "poly(A) binding protein... 119 6.8e-05 1
ASPGD|ASPL0000010999 - symbol:fabM species:162425 "Emeric... 122 6.9e-05 1
UNIPROTKB|B4DEH8 - symbol:PABPN1 "cDNA FLJ57714, highly s... 109 8.1e-05 1
UNIPROTKB|Q6TY21 - symbol:Pabpn1l-b "Embryonic polyadenyl... 113 8.9e-05 1
UNIPROTKB|G3V4T2 - symbol:PABPN1 "Polyadenylate-binding p... 109 0.00012 1
UNIPROTKB|F5H606 - symbol:RBM7 "RNA-binding protein 7" sp... 96 0.00012 1
TAIR|locus:2831834 - symbol:AT5G03580 species:3702 "Arabi... 96 0.00012 1
UNIPROTKB|E1B908 - symbol:E1B908 "Uncharacterized protein... 114 0.00014 1
UNIPROTKB|B1AM48 - symbol:ELAVL2 "ELAV-like protein 2" sp... 109 0.00017 1
WB|WBGene00017135 - symbol:EEED8.4 species:6239 "Caenorha... 109 0.00017 1
UNIPROTKB|I3LCY5 - symbol:LOC100525398 "Uncharacterized p... 112 0.00026 1
ASPGD|ASPL0000008076 - symbol:AN6004 species:162425 "Emer... 111 0.00028 1
WB|WBGene00011059 - symbol:R06C1.4 species:6239 "Caenorha... 92 0.00035 1
UNIPROTKB|Q9LEB4 - symbol:RBP45 "Polyadenylate-binding pr... 113 0.00035 1
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 115 0.00039 1
UNIPROTKB|F1MTN4 - symbol:PABPN1 "Polyadenylate-binding p... 109 0.00051 1
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 114 0.00054 1
MGI|MGI:1859158 - symbol:Pabpn1 "poly(A) binding protein,... 109 0.00062 1
UNIPROTKB|G3V7Z8 - symbol:Pabpn1 "Protein Pabpn1" species... 109 0.00062 1
UNIPROTKB|Q28165 - symbol:PABPN1 "Polyadenylate-binding p... 109 0.00064 1
UNIPROTKB|E2R6I0 - symbol:PABPN1 "Uncharacterized protein... 109 0.00064 1
UNIPROTKB|Q86U42 - symbol:PABPN1 "Polyadenylate-binding p... 109 0.00064 1
UNIPROTKB|F2Z5L8 - symbol:PABPN1 "Uncharacterized protein... 109 0.00064 1
FB|FBgn0035016 - symbol:CG4612 species:7227 "Drosophila m... 109 0.00064 1
UNIPROTKB|Q4VY17 - symbol:PABPC1L "EPAB" species:9606 "Ho... 109 0.00074 1
UNIPROTKB|E5RH24 - symbol:PABPC1 "Polyadenylate-binding p... 89 0.00075 1
UNIPROTKB|Q6NVP7 - symbol:pabpn1 "Polyadenylate-binding p... 108 0.00078 1
DICTYBASE|DDB_G0275459 - symbol:DDB_G0275459 "RNA-binding... 108 0.00080 1
UNIPROTKB|D4A7H6 - symbol:Elavl2 "ELAV-like protein 2" sp... 109 0.00080 1
UNIPROTKB|E5RGV5 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 98 0.00080 1
UNIPROTKB|Q12926 - symbol:ELAVL2 "ELAV-like protein 2" sp... 109 0.00085 1
MGI|MGI:1100887 - symbol:Elavl2 "ELAV (embryonic lethal, ... 109 0.00086 1
RGD|1566367 - symbol:Pabpc1l2a "poly(A) binding protein, ... 104 0.00090 1
UNIPROTKB|B1AM49 - symbol:ELAVL2 "ELAV-like protein 2" sp... 109 0.00097 1
UNIPROTKB|G3N063 - symbol:ELAVL2 "Uncharacterized protein... 109 0.00097 1
UNIPROTKB|E2RI94 - symbol:ELAVL2 "Uncharacterized protein... 109 0.00097 1
WB|WBGene00003904 - symbol:pabp-2 species:6239 "Caenorhab... 104 0.00097 1
>TAIR|locus:2091657 [details] [associations]
symbol:CID9 "CTC-interacting domain 9" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
EMBL:AB028617 HSSP:P11940 HOGENOM:HOG000006309 IPI:IPI00526270
RefSeq:NP_188063.1 UniGene:At.53311 ProteinModelPortal:Q9LRR6
SMR:Q9LRR6 EnsemblPlants:AT3G14450.1 GeneID:820668
KEGG:ath:AT3G14450 TAIR:At3g14450 eggNOG:NOG243629
InParanoid:Q9LRR6 OMA:PRVNRVG PhylomeDB:Q9LRR6
ProtClustDB:CLSN2915572 Genevestigator:Q9LRR6 Uniprot:Q9LRR6
Length = 327
Score = 741 (265.9 bits), Expect = 2.2e-73, P = 2.2e-73
Identities = 151/227 (66%), Positives = 174/227 (76%)
Query: 29 KSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNF-ADD----NKQSA-- 81
++ES + KLV MF KLNPLAKEFFPSYY ++ + N ADD KQS
Sbjct: 43 ETESRLDMHKLVAMFKKLNPLAKEFFPSYYDPKKNNQVAKANQFLPADDFETTKKQSGEE 102
Query: 82 --IDXXXXXXXXXXXX-XQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFS 138
+D QGR+RL+GR +AQREDS+RRTVYVSDIDQ++TEE LAGLFS
Sbjct: 103 FDLDAKKDDNTRKRRNYSQGRRRLTGRISKAQREDSIRRTVYVSDIDQSVTEEGLAGLFS 162
Query: 139 SCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVN 198
+CGQVVDCR+CGDPHSVLRFAFVEFAD+ GA AL+LGGTMLG+YPVRVLPSKTAILPVN
Sbjct: 163 NCGQVVDCRICGDPHSVLRFAFVEFADDQGAHEALSLGGTMLGFYPVRVLPSKTAILPVN 222
Query: 199 PTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTL 245
PTFLPRSEDEREMC+RT+YCTNIDKKV QA+V+ FFE+ACG EV L
Sbjct: 223 PTFLPRSEDEREMCTRTIYCTNIDKKVSQADVRNFFESACG-EVTRL 268
Score = 165 (63.1 bits), Expect = 7.5e-12, P = 7.5e-12
Identities = 38/92 (41%), Positives = 57/92 (61%)
Query: 108 RAQRE-DSVRRTVYVSDIDQNITEERLAGLF-SSCGQVVDCRVCGDP-HSVLRFAFVEFA 164
R++ E + RT+Y ++ID+ +++ + F S+CG+V R+ GD HS R AFVEFA
Sbjct: 228 RSEDEREMCTRTIYCTNIDKKVSQADVRNFFESACGEVTRLRLLGDQLHST-RIAFVEFA 286
Query: 165 DEHGARAALNLGGTMLGYYPVRVLPSKTAILP 196
A +ALN G ++G P+RV PSKT + P
Sbjct: 287 LADSALSALNCSGMVVGSQPIRVSPSKTPVRP 318
>TAIR|locus:2024842 [details] [associations]
symbol:CID8 "CTC-interacting domain 8" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0005515
"protein binding" evidence=IPI] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
EMBL:AC024260 HSSP:P11940 EMBL:BT014885 IPI:IPI00524059 PIR:F96576
RefSeq:NP_175769.1 UniGene:At.37370 ProteinModelPortal:Q9C8M0
SMR:Q9C8M0 STRING:Q9C8M0 EnsemblPlants:AT1G53650.1 GeneID:841802
KEGG:ath:AT1G53650 TAIR:At1g53650 HOGENOM:HOG000006309
InParanoid:Q9C8M0 OMA:ITEMATD PhylomeDB:Q9C8M0
ProtClustDB:CLSN2682126 Genevestigator:Q9C8M0 Uniprot:Q9C8M0
Length = 314
Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
Identities = 144/220 (65%), Positives = 171/220 (77%)
Query: 29 KSESEFT-VQKLVDMFTKLNPLAKEFFPSYYHQ-HTDHHFSVINNNFADDNKQSAIDXXX 86
KS+ E+ ++KLV MF KLNP AKEFFPSY + F + +DNK+ AI+
Sbjct: 42 KSKPEYDQMKKLVAMFKKLNPEAKEFFPSYKRNTNQSDDFVIAIKPSGEDNKKVAINRRR 101
Query: 87 XXXXXXXXXXQGRK-RLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVD 145
QGR+ RL GRA +AQREDS+RRTVYVSDIDQ++TEE LAGLFSSCGQVVD
Sbjct: 102 RNNYN-----QGRRVRLPGRASKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVD 156
Query: 146 CRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRS 205
CR+CGDP+SVLRFAFVEF+D+ GAR+AL+LGGTM+GYYPVRVLPSKTAILPVNPTFLPRS
Sbjct: 157 CRICGDPNSVLRFAFVEFSDDQGARSALSLGGTMIGYYPVRVLPSKTAILPVNPTFLPRS 216
Query: 206 EDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTL 245
EDEREMCSRT+YCTN+DK + +V FF++ACG EV L
Sbjct: 217 EDEREMCSRTIYCTNVDKNATEDDVNTFFQSACG-EVTRL 255
Score = 175 (66.7 bits), Expect = 4.8e-13, P = 4.8e-13
Identities = 41/90 (45%), Positives = 57/90 (63%)
Query: 108 RAQRE-DSVRRTVYVSDIDQNITEERLAGLF-SSCGQVVDCRVCGDP-HSVLRFAFVEFA 164
R++ E + RT+Y +++D+N TE+ + F S+CG+V R+ GD HS R AFVEFA
Sbjct: 215 RSEDEREMCSRTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVHST-RIAFVEFA 273
Query: 165 DEHGARAALNLGGTMLGYYPVRVLPSKTAI 194
A AALN G +LG P+RV PSKT +
Sbjct: 274 MAESAVAALNCSGIVLGSQPIRVSPSKTPV 303
>TAIR|locus:2035629 [details] [associations]
symbol:CID11 "CTC-interacting domain 11" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0046482 "para-aminobenzoic acid metabolic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
IPI:IPI00657306 RefSeq:NP_001031131.1 UniGene:At.27546
ProteinModelPortal:F4IEC7 SMR:F4IEC7 PRIDE:F4IEC7
EnsemblPlants:AT1G32790.2 GeneID:840173 KEGG:ath:AT1G32790
OMA:NARTSMA PhylomeDB:F4IEC7 Uniprot:F4IEC7
Length = 406
Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
Identities = 126/220 (57%), Positives = 157/220 (71%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDH-----HFSVI-----NNNFADDNKQSAIDXX 85
+++L ++F+KLNP+A+EF P ++ + F+ NN FA
Sbjct: 83 MRELQELFSKLNPMAEEFVPPSLNKQGGNGVNGGFFTSAGSFFRNNGFAGTGN-GGYGNE 141
Query: 86 XXXXXXXXXXXQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVD 145
QG++R++ R AQRED +RRTVYVSD+DQ +TEE+LAGLF SCGQVVD
Sbjct: 142 NGGFRRKKSFGQGKRRMNARTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQVVD 201
Query: 146 CRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRS 205
CR+CGDP+SVLRFAF+EF DE GA ALNL GTMLG+YPV+VLPSKTAI PVNPTFLPR+
Sbjct: 202 CRICGDPNSVLRFAFIEFTDEEGAMTALNLSGTMLGFYPVKVLPSKTAIAPVNPTFLPRT 261
Query: 206 EDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTL 245
EDEREMC+RT+YCTNIDKKV Q++VK FFE+ CG EV L
Sbjct: 262 EDEREMCARTIYCTNIDKKVTQSDVKIFFESFCG-EVYRL 300
Score = 137 (53.3 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 30/71 (42%), Positives = 41/71 (57%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +T+ + F S CG+V R+ GD R AFVEF A AALN
Sbjct: 270 RTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTRIAFVEFVMAESAIAALNC 329
Query: 176 GGTMLGYYPVR 186
G +LG P+R
Sbjct: 330 SGVVLGSLPIR 340
>TAIR|locus:2139242 [details] [associations]
symbol:CID12 "CTC-interacting domain 12" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 InterPro:IPR009818 Pfam:PF07145 EMBL:AL161517
EMBL:AL049523 EMBL:AF118222 EMBL:AF109721 EMBL:AY039599
EMBL:AY078011 EMBL:AY086286 IPI:IPI00524673 PIR:T04196
RefSeq:NP_192799.1 UniGene:At.24082 ProteinModelPortal:Q9S7N9
SMR:Q9S7N9 STRING:Q9S7N9 PRIDE:Q9S7N9 EnsemblPlants:AT4G10610.1
GeneID:826653 KEGG:ath:AT4G10610 TAIR:At4g10610 InParanoid:Q9S7N9
OMA:DMRELHE PhylomeDB:Q9S7N9 ProtClustDB:CLSN2682834
ArrayExpress:Q9S7N9 Genevestigator:Q9S7N9 Uniprot:Q9S7N9
Length = 336
Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
Identities = 121/214 (56%), Positives = 155/214 (72%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFS----VINNNFADDNKQSAIDXXXXXXXX 91
+++L ++ +KLNP+AKEF P + + F+ +NN F ++
Sbjct: 66 MRELHELLSKLNPMAKEFIPPSLTKPVVNGFNGGFFAVNNGFVAAGN-FPVNEDGSFRRK 124
Query: 92 XXXXXQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD 151
QG++R++ R AQRE+ +RRTVYVSDIDQ +TEE+LAGLF GQVVDCR+CGD
Sbjct: 125 KSFGQQGKRRMNPRTSLAQREEIIRRTVYVSDIDQQVTEEQLAGLFIGFGQVVDCRICGD 184
Query: 152 PHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREM 211
P+SVLRFAF+EF DE GAR ALNL GTMLG+YPV+V+PSKTAI PVNPTFLPR+EDEREM
Sbjct: 185 PNSVLRFAFIEFTDEVGARTALNLSGTMLGFYPVKVMPSKTAIAPVNPTFLPRTEDEREM 244
Query: 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTL 245
C+RT+YCTNIDKK+ Q ++K FFE+ CG EV L
Sbjct: 245 CARTIYCTNIDKKLTQTDIKLFFESVCG-EVYRL 277
Score = 173 (66.0 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 39/91 (42%), Positives = 52/91 (57%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +T+ + F S CG+V R+ GD H R FVEF A AALN
Sbjct: 247 RTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRLLGDYHHPTRIGFVEFVMAESAIAALNC 306
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSE 206
G +LG P+RV PSKT PV +PR +
Sbjct: 307 SGVLLGSLPIRVSPSKT---PVRSRAIPRHQ 334
>TAIR|locus:2082961 [details] [associations]
symbol:CID10 "CTC-interacting domain 10" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GO:GO:0000166 EMBL:AC012329
EMBL:AL132956 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818
Pfam:PF07145 EMBL:AK317338 IPI:IPI00545615 PIR:T45844
RefSeq:NP_001030833.1 RefSeq:NP_190508.1 UniGene:At.738
ProteinModelPortal:Q9SG10 SMR:Q9SG10 PRIDE:Q9SG10
EnsemblPlants:AT3G49390.1 EnsemblPlants:AT3G49390.2 GeneID:824101
KEGG:ath:AT3G49390 TAIR:At3g49390 InParanoid:Q9SG10 OMA:ETDDRIN
PhylomeDB:Q9SG10 ProtClustDB:CLSN2684239 Genevestigator:Q9SG10
Uniprot:Q9SG10
Length = 353
Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
Identities = 123/213 (57%), Positives = 154/213 (72%)
Query: 36 VQKLVDMFTKLNPLAKEFFP-SYYHQHTD--HHFSVINNNFADDNKQSAIDXXXXXXXXX 92
++ L D F+KLNP+A+EF P S + + NNFA K + D
Sbjct: 87 IKDLADAFSKLNPMAQEFVPPSLARSQSGVLRNGLGFTNNFAAPPKLA--DGNDHFPRRR 144
Query: 93 XXXXQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP 152
QG++R++ R AQ++D +RRTVYVSDIDQ +TEE LAG+F +CGQVVDCRVCGDP
Sbjct: 145 RSFGQGKRRMNKRTSLAQKDDVIRRTVYVSDIDQQVTEENLAGVFINCGQVVDCRVCGDP 204
Query: 153 HSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+SVLRFAF+EF +E GARAAL++ GT+LG+YP++VLPSKTAI PVNPTFLPRSEDEREMC
Sbjct: 205 NSVLRFAFIEFTNEEGARAALSMSGTVLGFYPLKVLPSKTAIAPVNPTFLPRSEDEREMC 264
Query: 213 SRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTL 245
RTVYCTNIDK++ Q ++K FFE CG EV L
Sbjct: 265 VRTVYCTNIDKRITQIDLKGFFEMLCG-EVHRL 296
Score = 184 (69.8 bits), Expect = 7.2e-14, P = 7.2e-14
Identities = 49/98 (50%), Positives = 60/98 (61%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHG 168
+RE VR TVY ++ID+ IT+ L G F CG+V R+ GD H R AFVEFA
Sbjct: 260 EREMCVR-TVYCTNIDKRITQIDLKGFFEMLCGEVHRLRL-GDYHHQTRIAFVEFAMAES 317
Query: 169 ARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSE 206
A AAL+ G +LG P+RV PSKT PV P F PR+E
Sbjct: 318 AIAALHCSGIVLGALPIRVSPSKT---PVRPHF-PRAE 351
>TAIR|locus:2184022 [details] [associations]
symbol:CID13 "CTC-interacting domain 13" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR009818 Pfam:PF07145
EMBL:AB025641 HOGENOM:HOG000006309 IPI:IPI00536712
RefSeq:NP_197832.1 UniGene:At.54975 ProteinModelPortal:Q9FGE6
SMR:Q9FGE6 EnsemblPlants:AT5G24440.1 GeneID:832515
KEGG:ath:AT5G24440 TAIR:At5g24440 eggNOG:NOG303272
InParanoid:Q9FGE6 OMA:FKLAESA PhylomeDB:Q9FGE6
ProtClustDB:CLSN2916288 Genevestigator:Q9FGE6 Uniprot:Q9FGE6
Length = 320
Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
Identities = 105/202 (51%), Positives = 131/202 (64%)
Query: 46 LNPLAKEFFPSYYHQHTDHHFSVINNNFADDNK--QSAIDXXXXXXXXXXXXXQGRKRLS 103
LNP+AKEF PS+ Q HH N F N + I +GR ++
Sbjct: 66 LNPMAKEFVPSFLAQ--THHSEFWGNRFWFTNHFPKQTIFLIGQFATMRRNFGKGRPWIT 123
Query: 104 GRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEF 163
+ Q ED ++RTVYVSDID +TEE+LA LF SCGQVVDCR+CGD S+LRFAF+EF
Sbjct: 124 KKTNLVQNEDMIKRTVYVSDIDNQVTEEQLASLFLSCGQVVDCRMCGDYKSILRFAFIEF 183
Query: 164 ADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDK 223
D GAR+AL GTM G +P+RV SKTAI PVNP+FLP+S+DE E C +TVYCTNIDK
Sbjct: 184 TDAEGARSALRKSGTMFGSHPIRVFMSKTAIAPVNPSFLPQSKDELEKCGKTVYCTNIDK 243
Query: 224 KVPQAEVKQFFEAACGGEVRTL 245
+V + E++ FF+ CG EV L
Sbjct: 244 EVTKMELENFFKTVCG-EVHHL 264
Score = 161 (61.7 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 37/93 (39%), Positives = 54/93 (58%)
Query: 106 AFRAQREDSVRR---TVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFV 161
+F Q +D + + TVY ++ID+ +T+ L F + CG+V R+ GD + R AFV
Sbjct: 220 SFLPQSKDELEKCGKTVYCTNIDKEVTKMELENFFKTVCGEVHHLRLLGDFYHQTRIAFV 279
Query: 162 EFADEHGARAALNLGGTMLGYYPVRVLPSKTAI 194
EF A +ALN G +LG P+RV PSKT +
Sbjct: 280 EFKLAESAISALNCSGVVLGELPIRVSPSKTPV 312
>MGI|MGI:2145245 [details] [associations]
symbol:Srek1 "splicing regulatory glutamine/lysine-rich
protein 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 MGI:MGI:2145245 GO:GO:0005739
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 GeneTree:ENSGT00700000104035
eggNOG:NOG277302 KO:K13165 CTD:140890 HOVERGEN:HBG079174
OMA:EKEQDKD OrthoDB:EOG4K3KWS EMBL:AK033354 EMBL:AK037115
EMBL:AK039311 EMBL:AK044086 EMBL:AK052265 EMBL:BC070460
IPI:IPI00227738 IPI:IPI00379480 RefSeq:NP_766180.1
UniGene:Mm.458176 ProteinModelPortal:Q8BZX4 SMR:Q8BZX4
STRING:Q8BZX4 PhosphoSite:Q8BZX4 PaxDb:Q8BZX4 PRIDE:Q8BZX4
Ensembl:ENSMUST00000074616 GeneID:218543 KEGG:mmu:218543
UCSC:uc007rsh.1 InParanoid:Q8BZX4 NextBio:376337 Bgee:Q8BZX4
CleanEx:MM_SFRS12 Genevestigator:Q8BZX4
GermOnline:ENSMUSG00000032621 Uniprot:Q8BZX4
Length = 494
Score = 156 (60.0 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 36/94 (38%), Positives = 52/94 (55%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 65 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 124
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRS 205
AL G M G P+++ S AI+ P P++
Sbjct: 125 ALAFNGVMFGDRPLKINHSNNAIVKP-PEMTPQA 157
>RGD|621696 [details] [associations]
symbol:Srek1 "splicing regulatory glutamine/lysine-rich protein
1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 RGD:621696 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 KO:K13165 CTD:140890
HOVERGEN:HBG079174 OrthoDB:EOG4K3KWS EMBL:AF234765 IPI:IPI00202759
RefSeq:NP_064477.1 UniGene:Rn.161755 ProteinModelPortal:Q9JKL7
STRING:Q9JKL7 PRIDE:Q9JKL7 GeneID:56763 KEGG:rno:56763
UCSC:RGD:621696 eggNOG:NOG310672 InParanoid:Q9JKL7 NextBio:611146
Genevestigator:Q9JKL7 GermOnline:ENSRNOG00000032735 Uniprot:Q9JKL7
Length = 494
Score = 156 (60.0 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 36/94 (38%), Positives = 52/94 (55%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 65 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 124
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRS 205
AL G M G P+++ S AI+ P P++
Sbjct: 125 ALAFNGVMFGDRPLKINHSNNAIVKP-PEMTPQA 157
>UNIPROTKB|Q9JKL7 [details] [associations]
symbol:Srek1 "Splicing regulatory glutamine/lysine-rich
protein 1" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:621696 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003676 KO:K13165 CTD:140890 HOVERGEN:HBG079174
OrthoDB:EOG4K3KWS EMBL:AF234765 IPI:IPI00202759 RefSeq:NP_064477.1
UniGene:Rn.161755 ProteinModelPortal:Q9JKL7 STRING:Q9JKL7
PRIDE:Q9JKL7 GeneID:56763 KEGG:rno:56763 UCSC:RGD:621696
eggNOG:NOG310672 InParanoid:Q9JKL7 NextBio:611146
Genevestigator:Q9JKL7 GermOnline:ENSRNOG00000032735 Uniprot:Q9JKL7
Length = 494
Score = 156 (60.0 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 36/94 (38%), Positives = 52/94 (55%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 65 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 124
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRS 205
AL G M G P+++ S AI+ P P++
Sbjct: 125 ALAFNGVMFGDRPLKINHSNNAIVKP-PEMTPQA 157
>UNIPROTKB|Q8WXA9 [details] [associations]
symbol:SREK1 "Splicing regulatory glutamine/lysine-rich
protein 1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0043231 "intracellular membrane-bounded
organelle" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 eggNOG:NOG277302 KO:K13165
EMBL:AF459094 EMBL:BC047322 EMBL:BC067770 EMBL:BC112343
IPI:IPI00103497 IPI:IPI00375462 RefSeq:NP_001070667.1
RefSeq:NP_001257421.1 RefSeq:NP_631907.1 UniGene:Hs.49367
UniGene:Hs.519347 ProteinModelPortal:Q8WXA9 SMR:Q8WXA9
IntAct:Q8WXA9 STRING:Q8WXA9 PhosphoSite:Q8WXA9 DMDM:37537968
PaxDb:Q8WXA9 PeptideAtlas:Q8WXA9 PRIDE:Q8WXA9
Ensembl:ENST00000334121 Ensembl:ENST00000380918 GeneID:140890
KEGG:hsa:140890 UCSC:uc003jun.3 UCSC:uc003juo.3 CTD:140890
GeneCards:GC05P065435 HGNC:HGNC:17882 HPA:HPA037674 MIM:609268
neXtProt:NX_Q8WXA9 PharmGKB:PA38255 HOVERGEN:HBG079174
InParanoid:Q8WXA9 OMA:EKEQDKD OrthoDB:EOG4K3KWS ChiTaRS:SREK1
GenomeRNAi:140890 NextBio:84548 ArrayExpress:Q8WXA9 Bgee:Q8WXA9
CleanEx:HS_SFRS12 Genevestigator:Q8WXA9 GermOnline:ENSG00000153914
Uniprot:Q8WXA9
Length = 508
Score = 156 (60.0 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 36/94 (38%), Positives = 52/94 (55%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 62 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 121
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRS 205
AL G M G P+++ S AI+ P P++
Sbjct: 122 ALAFNGVMFGDRPLKINHSNNAIVKP-PEMTPQA 154
>UNIPROTKB|E2R749 [details] [associations]
symbol:SREK1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104035
EMBL:AAEX03001478 Ensembl:ENSCAFT00000012107 Uniprot:E2R749
Length = 510
Score = 156 (60.0 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 36/94 (38%), Positives = 52/94 (55%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 62 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 121
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRS 205
AL G M G P+++ S AI+ P P++
Sbjct: 122 ALAFNGVMFGDRPLKINHSNNAIVKP-PEMTPQA 154
>UNIPROTKB|J9P0H2 [details] [associations]
symbol:SREK1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104035 KO:K13165 CTD:140890 OMA:EKEQDKD
EMBL:AAEX03001478 RefSeq:XP_544361.3 Ensembl:ENSCAFT00000044884
GeneID:487233 KEGG:cfa:487233 Uniprot:J9P0H2
Length = 626
Score = 156 (60.0 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 36/94 (38%), Positives = 52/94 (55%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRS 205
AL G M G P+++ S AI+ P P++
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIVKP-PEMTPQA 270
>ZFIN|ZDB-GENE-040801-132 [details] [associations]
symbol:srek1 "splicing regulatory
glutamine/lysine-rich protein 1" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040801-132 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104035
eggNOG:NOG277302 OrthoDB:EOG4K3KWS HOGENOM:HOG000121772
EMBL:BX950207 EMBL:CU207241 EMBL:CU467961 IPI:IPI00497438
UniGene:Dr.81675 Ensembl:ENSDART00000134937 HOVERGEN:HBG097523
InParanoid:A2BIN4 Uniprot:A2BIN4
Length = 515
Score = 155 (59.6 bits), Expect = 5.1e-10, P = 5.1e-10
Identities = 36/94 (38%), Positives = 51/94 (54%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q+ T ++L F G V R+ GD RFAFVEFAD+
Sbjct: 167 DEIRRTVYVGNLNSQSTTADQLLKFFKQVGDVKFVRMAGDETQPTRFAFVEFADQDSVAR 226
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRS 205
AL G M G P+++ S AI+ P P++
Sbjct: 227 ALTYNGVMFGDRPLKINHSNNAIVKP-PELTPQA 259
>POMBASE|SPBC16E9.12c [details] [associations]
symbol:pab2 "poly(A) binding protein Pab2" species:4896
"Schizosaccharomyces pombe" [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0008143 "poly(A) RNA binding" evidence=IDA] [GO:0010972
"negative regulation of G2/M transition of mitotic cell cycle"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBC16E9.12c GO:GO:0005634
GO:GO:0000166 EMBL:CU329671 Gene3D:3.30.70.330
GenomeReviews:CU329671_GR eggNOG:COG0724 GO:GO:0000289
GO:GO:0010972 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
PIR:T39586 RefSeq:NP_595794.1 ProteinModelPortal:O14327 SMR:O14327
STRING:O14327 EnsemblFungi:SPBC16E9.12c.1 GeneID:2539733
KEGG:spo:SPBC16E9.12c OMA:RARAISY OrthoDB:EOG44N22T
NextBio:20800884 Uniprot:O14327
Length = 166
Score = 126 (49.4 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 32/94 (34%), Positives = 51/94 (54%)
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAF 160
A R +E ++VYV ++D ++T E L F+SCG V + C + G P FA+
Sbjct: 44 ALRNDKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKG---FAY 100
Query: 161 VEFADEHGARAALNLGGTMLGYYPVRVLPSKTAI 194
+EF++ AL L G+ML P++V P +T +
Sbjct: 101 IEFSEPSLVPNALLLNGSMLHERPLKVTPKRTNV 134
>UNIPROTKB|F1NA16 [details] [associations]
symbol:Gga.54187 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005739 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104035
OMA:EKEQDKD EMBL:AADN02045988 EMBL:AADN02045989 EMBL:AADN02045990
EMBL:AADN02045991 EMBL:AADN02045992 EMBL:AADN02045993
IPI:IPI00583646 Ensembl:ENSGALT00000023839 Uniprot:F1NA16
Length = 475
Score = 143 (55.4 bits), Expect = 8.3e-08, P = 8.3e-08
Identities = 31/75 (41%), Positives = 43/75 (57%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 164 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 223
Query: 172 ALNLGGTMLGYYPVR 186
AL G M G P++
Sbjct: 224 ALAFNGVMFGDRPLK 238
>ZFIN|ZDB-GENE-080709-5 [details] [associations]
symbol:pabpn1l "poly(A) binding protein, nuclear 1,
like" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-080709-5 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00390000001517
EMBL:BX248306 IPI:IPI00852075 RefSeq:XP_001923043.1
ProteinModelPortal:E9QGY6 Ensembl:ENSDART00000135304 GeneID:796580
KEGG:dre:796580 NextBio:20932666 ArrayExpress:E9QGY6 Bgee:E9QGY6
Uniprot:E9QGY6
Length = 192
Score = 123 (48.4 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 32/90 (35%), Positives = 47/90 (52%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQV--VDC---RVCGDPHSVLRFAFVEFA 164
+R DS RR++YV ++D T + L F+SCG V V R G P FA++EF+
Sbjct: 59 ERIDSDRRSIYVGNVDYGATADELEMYFNSCGHVNRVTIPYNRFTGHPKG---FAYIEFS 115
Query: 165 DEHGARAALNLGGTMLGYYPVRVLPSKTAI 194
D R A+ L T+ ++V P +T I
Sbjct: 116 DRESVRTAMALDETLFRGRVIKVSPKRTNI 145
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 105 (42.0 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 30/73 (41%), Positives = 38/73 (52%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCR-VCGDPHSVLR-FAFVEFADEHGA-RAALN 174
+VYV + TEE L FSS GQ+ + R VC R FAF+EFA+E A RA
Sbjct: 6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQ 65
Query: 175 LGGTMLGYYPVRV 187
+ G P+RV
Sbjct: 66 MNGAEFNGRPLRV 78
>UNIPROTKB|H0YEQ8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000470443 Uniprot:H0YEQ8
Length = 112
Score = 99 (39.9 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 23/81 (28%), Positives = 45/81 (55%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 27 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 86
Query: 161 VEFADEHGARAALN-LGGTML 180
V F + A A+ + G +L
Sbjct: 87 VHFETQEAADKAIEKMNGMLL 107
>UNIPROTKB|Q804A5 [details] [associations]
symbol:Pabpn1l-a "Embryonic polyadenylate-binding protein
2-A" species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 HOVERGEN:HBG107480
GO:GO:0008143 EMBL:AY221506 RefSeq:NP_001082505.1 UniGene:Xl.83425
ProteinModelPortal:Q804A5 SMR:Q804A5 DIP:DIP-46304N GeneID:398516
KEGG:xla:398516 CTD:398516 Xenbase:XB-GENE-6256056 Uniprot:Q804A5
Length = 218
Score = 114 (45.2 bits), Expect = 6.7e-05, P = 6.7e-05
Identities = 28/99 (28%), Positives = 52/99 (52%)
Query: 105 RAFRAQREDSV-RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFV 161
R A+ + + +R+VYV ++D T + L FSSCG + + D S +A++
Sbjct: 80 RPLSAEEKKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYI 139
Query: 162 EFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPT 200
EFA+ + AA+ + T+ ++VLP +T + ++ T
Sbjct: 140 EFAERNSVDAAVTMDETVFRGRTIKVLPKRTNMPGISST 178
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 119 (46.9 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 36/143 (25%), Positives = 70/143 (48%)
Query: 101 RLSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH 153
+L G+ R ++R+ S R + V+V ++D++I ++L +FS+ G+V+ C+V D
Sbjct: 8 KLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDAS 67
Query: 154 SVLR-FAFVEFADEHGARAALNL-GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREM 211
V + + FV+F + A N GT++ + V P F+ R + ++
Sbjct: 68 GVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCP-----------FVSRGQWDKSR 116
Query: 212 CSRTVYCTNIDKKVPQAEVKQFF 234
VY N+ + A++K+ F
Sbjct: 117 VFTNVYVKNLVETATDADLKRLF 139
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 122 (48.0 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 30/77 (38%), Positives = 44/77 (57%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADE-HGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + D HG RA
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 103 LNYTLIKGKPCRIMWSQ 119
>UNIPROTKB|B4DEH8 [details] [associations]
symbol:PABPN1 "cDNA FLJ57714, highly similar to
Poly(A)-binding protein 2" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829
HOVERGEN:HBG107480 HOGENOM:HOG000208465 IPI:IPI00414963
UniGene:Hs.707712 HGNC:HGNC:8565 EMBL:AK293633 SMR:B4DEH8
STRING:B4DEH8 Ensembl:ENST00000557702 Uniprot:B4DEH8
Length = 168
Score = 109 (43.4 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEH 167
++ ++ R++YV ++D T E L F CG V + D S FA++EF+D+
Sbjct: 37 EKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 96
Query: 168 GARAALNLGGTMLGYYPVRVLPSKT 192
R +L L ++ ++V+P +T
Sbjct: 97 SVRTSLALDESLFRGRQIKVIPKRT 121
>UNIPROTKB|Q6TY21 [details] [associations]
symbol:Pabpn1l-b "Embryonic polyadenylate-binding protein
2-B" species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 HOVERGEN:HBG107480
GO:GO:0008143 EMBL:AY382837 RefSeq:NP_001084418.1 UniGene:Xl.86989
PDB:2JWN PDBsum:2JWN ProteinModelPortal:Q6TY21 SMR:Q6TY21
GeneID:403372 KEGG:xla:403372 CTD:403372 Xenbase:XB-GENE-1000606
KO:K14396 EvolutionaryTrace:Q6TY21 Uniprot:Q6TY21
Length = 218
Score = 113 (44.8 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 26/93 (27%), Positives = 51/93 (54%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEH 167
++++ +R+VYV ++D T + L FSSCG + + D S +A++EFA+ +
Sbjct: 86 EKKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERN 145
Query: 168 GARAALNLGGTMLGYYPVRVLPSKTAILPVNPT 200
AA+ + T+ ++VLP +T + ++ T
Sbjct: 146 SVDAAVAMDETVFRGRTIKVLPKRTNMPGISST 178
>UNIPROTKB|G3V4T2 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL049829 HGNC:HGNC:8565
ProteinModelPortal:G3V4T2 SMR:G3V4T2 Ensembl:ENST00000556821
ArrayExpress:G3V4T2 Bgee:G3V4T2 Uniprot:G3V4T2
Length = 178
Score = 109 (43.4 bits), Expect = 0.00012, P = 0.00012
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEH 167
++ ++ R++YV ++D T E L F CG V + D S FA++EF+D+
Sbjct: 37 EKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 96
Query: 168 GARAALNLGGTMLGYYPVRVLPSKT 192
R +L L ++ ++V+P +T
Sbjct: 97 SVRTSLALDESLFRGRQIKVIPKRT 121
>UNIPROTKB|F5H606 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01013862 ProteinModelPortal:F5H606 SMR:F5H606
Ensembl:ENST00000542140 ArrayExpress:F5H606 Bgee:F5H606
Uniprot:F5H606
Length = 123
Score = 96 (38.9 bits), Expect = 0.00012, P = 0.00012
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALNL 175
RT++V +++ +TEE L LF G V+ ++ D + FAFV F E A+NL
Sbjct: 10 RTLFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNL 69
Query: 176 -GGTMLGYYPVRVLPSKTAILP 196
G L P+++ ++ ++P
Sbjct: 70 LNGIKLYGRPIKI-QFRSVVMP 90
>TAIR|locus:2831834 [details] [associations]
symbol:AT5G03580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00525082 RefSeq:NP_195978.1 UniGene:At.65484
ProteinModelPortal:F4KGN7 SMR:F4KGN7 PRIDE:F4KGN7
EnsemblPlants:AT5G03580.1 GeneID:831785 KEGG:ath:AT5G03580
OMA:DNHGSSS PhylomeDB:F4KGN7 Uniprot:F4KGN7
Length = 101
Score = 96 (38.9 bits), Expect = 0.00012, P = 0.00012
Identities = 24/67 (35%), Positives = 41/67 (61%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEF--ADEHGARAALN 174
++Y++++D ++EE L +FS G+V+ + D R FAF+EF AD G RA L+
Sbjct: 18 SLYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGFAFIEFESADSAG-RAMLH 76
Query: 175 LGGTMLG 181
+ G ++G
Sbjct: 77 MDGRLIG 83
>UNIPROTKB|E1B908 [details] [associations]
symbol:E1B908 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:RCGEVHR
GeneTree:ENSGT00390000001517 EMBL:DAAA02046256 IPI:IPI00826522
Ensembl:ENSBTAT00000032540 Uniprot:E1B908
Length = 290
Score = 114 (45.2 bits), Expect = 0.00014, P = 0.00014
Identities = 25/93 (26%), Positives = 51/93 (54%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEH 167
++ ++ R++YV ++D T + L F+ CG++ + D S +A++EFA E
Sbjct: 152 EKAEADHRSIYVGNVDYGGTAQELEAYFNHCGEIHRVTILCDKFSGHPKGYAYIEFATES 211
Query: 168 GARAALNLGGTMLGYYPVRVLPSKTAILPVNPT 200
A+AA+ L ++ ++VLP +T + ++ T
Sbjct: 212 SAQAAVELDKSIFRGRVIKVLPKRTNLPGISST 244
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 109 (43.4 bits), Expect = 0.00017, P = 0.00017
Identities = 33/108 (30%), Positives = 56/108 (51%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVL---PSKTAILPVN--PTFLPRSEDEREM 211
A+N L G L ++V PS +I N + LP++ ++E+
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 141
>WB|WBGene00017135 [details] [associations]
symbol:EEED8.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG238057
EMBL:FO081042 HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517
PIR:T15924 RefSeq:NP_495022.2 ProteinModelPortal:Q09295 SMR:Q09295
STRING:Q09295 EnsemblMetazoa:EEED8.4 GeneID:173921
KEGG:cel:CELE_EEED8.4 UCSC:EEED8.4 CTD:173921 WormBase:EEED8.4
InParanoid:Q09295 OMA:KSERASP NextBio:881673 Uniprot:Q09295
Length = 191
Score = 109 (43.4 bits), Expect = 0.00017, P = 0.00017
Identities = 32/129 (24%), Positives = 56/129 (43%)
Query: 74 ADDNKQSAIDXXXXXXXXXXXXXQGR--KRLSGRAFRAQREDSVR----RTVYVSDIDQN 127
AD+N S + Q + K L A+ E+ + ++V++ ++D N
Sbjct: 6 ADNNSNSHFEMEIEAESAILQQIQNKMAKHLESAAYVPPTEEEQKAIDAKSVFIGNVDFN 65
Query: 128 ITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALNLGGTMLGYYPV 185
T E + F CGQ+V + D + + FA++EF D AL + G++ P+
Sbjct: 66 STIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPI 125
Query: 186 RVLPSKTAI 194
V +T I
Sbjct: 126 VVTAKRTNI 134
>UNIPROTKB|I3LCY5 [details] [associations]
symbol:LOC100525398 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:RCGEVHR
GeneTree:ENSGT00390000001517 EMBL:FP102571
Ensembl:ENSSSCT00000023360 Uniprot:I3LCY5
Length = 295
Score = 112 (44.5 bits), Expect = 0.00026, P = 0.00026
Identities = 26/93 (27%), Positives = 49/93 (52%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEH 167
++ ++ R+VYV ++D T L F+ CG++ + D S +A++EFA E
Sbjct: 155 EKVEADHRSVYVGNVDYEGTARELEAYFNHCGEIHRVTILCDKFSGHPKGYAYIEFATES 214
Query: 168 GARAALNLGGTMLGYYPVRVLPSKTAILPVNPT 200
A+AA+ L ++ ++VLP +T ++ T
Sbjct: 215 SAQAAVELDNSVFRGRVIKVLPKRTNFPGISST 247
>ASPGD|ASPL0000008076 [details] [associations]
symbol:AN6004 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001301 EMBL:AACD01000102 eggNOG:NOG67475
HOGENOM:HOG000163072 OrthoDB:EOG4C5GTR RefSeq:XP_663608.1
ProteinModelPortal:Q5B0C6 EnsemblFungi:CADANIAT00007014
GeneID:2871044 KEGG:ani:AN6004.2 OMA:HQLRANA Uniprot:Q5B0C6
Length = 270
Score = 111 (44.1 bits), Expect = 0.00028, P = 0.00028
Identities = 32/82 (39%), Positives = 46/82 (56%)
Query: 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVC---GDPHSVLRFAFVEFADEHGAR 170
S R TV+VS+ID + +E+ + FS CG++V V G+P S L+ A V F + A+
Sbjct: 2 SDRTTVHVSNIDPSTSEKEVQDFFSFCGKIVSISVTPTSGEPGS-LKSATVTFEKDAAAK 60
Query: 171 AALNLGGTMLGYYPVRVLPSKT 192
AL L T LG V V ++T
Sbjct: 61 TALLLDQTQLGPSVVTVKAAQT 82
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 92 (37.4 bits), Expect = 0.00035, P = 0.00035
Identities = 26/73 (35%), Positives = 38/73 (52%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA-RAALN 174
+VYV ++ TEE + F++ G V + R+ D + FAFVEF++E GA RA
Sbjct: 7 SVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQ 66
Query: 175 LGGTMLGYYPVRV 187
L G +RV
Sbjct: 67 LNGVAFNGRNLRV 79
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 113 (44.8 bits), Expect = 0.00035, P = 0.00035
Identities = 36/137 (26%), Positives = 67/137 (48%)
Query: 110 QREDSVRRTVYVSDIDQNITE----ERLAGLFSSC--GQVVDCRVCGDPHSVLRFAFVEF 163
+R+DS T++V D+ ++T+ E ++SS +VV R+ G + FV+F
Sbjct: 169 RRDDSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKG---YGFVKF 225
Query: 164 ADE-HGARAALNLGGTMLGYYPVRVLPS---KTAILPVNPTFL-PRS-EDEREMCSRTVY 217
ADE RA + G + P+R+ P+ K P T+ P++ + E + + T++
Sbjct: 226 ADESEQLRAMTEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQGESDPNNTTIF 285
Query: 218 CTNIDKKVPQAEVKQFF 234
+D V + ++Q F
Sbjct: 286 VGGLDPTVAEEHLRQVF 302
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 115 (45.5 bits), Expect = 0.00039, P = 0.00039
Identities = 29/91 (31%), Positives = 50/91 (54%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ SVRR+ +++ ++D++I + L FSS G +V C+V D + +
Sbjct: 108 RVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYG 167
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLP 189
FV++A+E A+ A+ L G +L V V P
Sbjct: 168 FVQYANEESAQKAIEKLNGMLLNDKQVYVGP 198
>UNIPROTKB|F1MTN4 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000001517 EMBL:DAAA02028043 IPI:IPI00837600
Ensembl:ENSBTAT00000047156 ArrayExpress:F1MTN4 Uniprot:F1MTN4
Length = 275
Score = 109 (43.4 bits), Expect = 0.00051, P = 0.00051
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEH 167
++ ++ R++YV ++D T E L F CG V + D S FA++EF+D+
Sbjct: 134 EKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 193
Query: 168 GARAALNLGGTMLGYYPVRVLPSKT 192
R +L L ++ ++V+P +T
Sbjct: 194 SVRTSLALDESLFRGRQIKVIPKRT 218
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 114 (45.2 bits), Expect = 0.00054, P = 0.00054
Identities = 43/145 (29%), Positives = 68/145 (46%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
L+G+ R + R+ S RR+ ++V ++D+++ + L FS CG +V C+V D
Sbjct: 112 LNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMG 171
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDER--- 209
R + FV+F E A+ A+ L G +VL K V P FL + E E
Sbjct: 172 QSRGYGFVQFDTEDSAKNAIEKLNG--------KVLNDKQIF--VGP-FLRKEERESAAD 220
Query: 210 EMCSRTVYCTNIDKKVPQAEVKQFF 234
+M VY N+ + E+K F
Sbjct: 221 KMKFTNVYVKNLSEATTDDELKTTF 245
>MGI|MGI:1859158 [details] [associations]
symbol:Pabpn1 "poly(A) binding protein, nuclear 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
[GO:0016973 "poly(A)+ mRNA export from nucleus" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:U93050 MGI:MGI:1859158 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0030529 HOVERGEN:HBG107480 GO:GO:0008143 GO:GO:0016973
KO:K14396 HOGENOM:HOG000208465 GeneTree:ENSGT00390000001517
CTD:8106 EMBL:AK032172 EMBL:BC055866 IPI:IPI00136169
IPI:IPI00410858 RefSeq:NP_062275.1 UniGene:Mm.7723
ProteinModelPortal:Q8CCS6 SMR:Q8CCS6 IntAct:Q8CCS6 STRING:Q8CCS6
PhosphoSite:Q8CCS6 PRIDE:Q8CCS6 Ensembl:ENSMUST00000022808
Ensembl:ENSMUST00000116476 GeneID:54196 KEGG:mmu:54196
UCSC:uc007txg.2 UCSC:uc007txh.2 InParanoid:Q8CCS6 ChiTaRS:PABPN1
NextBio:311042 Bgee:Q8CCS6 CleanEx:MM_PABPN1 Genevestigator:Q8CCS6
GermOnline:ENSMUSG00000022198 Uniprot:Q8CCS6
Length = 302
Score = 109 (43.4 bits), Expect = 0.00062, P = 0.00062
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEH 167
++ ++ R++YV ++D T E L F CG V + D S FA++EF+D+
Sbjct: 161 EKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 220
Query: 168 GARAALNLGGTMLGYYPVRVLPSKT 192
R +L L ++ ++V+P +T
Sbjct: 221 SVRTSLALDESLFRGRQIKVIPKRT 245
>UNIPROTKB|G3V7Z8 [details] [associations]
symbol:Pabpn1 "Protein Pabpn1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:619928 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474049 KO:K14396 GeneTree:ENSGT00390000001517 CTD:8106
RefSeq:NP_001128480.1 UniGene:Rn.39199 ProteinModelPortal:G3V7Z8
Ensembl:ENSRNOT00000021096 GeneID:116697 KEGG:rno:116697
NextBio:619592 Uniprot:G3V7Z8
Length = 302
Score = 109 (43.4 bits), Expect = 0.00062, P = 0.00062
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEH 167
++ ++ R++YV ++D T E L F CG V + D S FA++EF+D+
Sbjct: 161 EKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 220
Query: 168 GARAALNLGGTMLGYYPVRVLPSKT 192
R +L L ++ ++V+P +T
Sbjct: 221 SVRTSLALDESLFRGRQIKVIPKRT 245
>UNIPROTKB|Q28165 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0016973 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD EMBL:X89969
EMBL:BC133558 IPI:IPI00701904 PIR:S59863 RefSeq:NP_776994.1
UniGene:Bt.5085 ProteinModelPortal:Q28165 SMR:Q28165 STRING:Q28165
PRIDE:Q28165 Ensembl:ENSBTAT00000021887 GeneID:282298
KEGG:bta:282298 CTD:8106 InParanoid:Q28165 OMA:RTTSWYS
NextBio:20806099 ArrayExpress:Q28165 Uniprot:Q28165
Length = 306
Score = 109 (43.4 bits), Expect = 0.00064, P = 0.00064
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEH 167
++ ++ R++YV ++D T E L F CG V + D S FA++EF+D+
Sbjct: 165 EKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 224
Query: 168 GARAALNLGGTMLGYYPVRVLPSKT 192
R +L L ++ ++V+P +T
Sbjct: 225 SVRTSLALDESLFRGRQIKVIPKRT 249
>UNIPROTKB|E2R6I0 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GO:GO:0016973
GeneTree:ENSGT00390000001517 OMA:RTTSWYS EMBL:AAEX03005608
Ensembl:ENSCAFT00000018216 Uniprot:E2R6I0
Length = 306
Score = 109 (43.4 bits), Expect = 0.00064, P = 0.00064
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEH 167
++ ++ R++YV ++D T E L F CG V + D S FA++EF+D+
Sbjct: 165 EKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 224
Query: 168 GARAALNLGGTMLGYYPVRVLPSKT 192
R +L L ++ ++V+P +T
Sbjct: 225 SVRTSLALDESLFRGRQIKVIPKRT 249
>UNIPROTKB|Q86U42 [details] [associations]
symbol:PABPN1 "Polyadenylate-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0006936 "muscle
contraction" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0019048 "virus-host
interaction" evidence=TAS] [GO:0019054 "modulation by virus of host
cellular process" evidence=TAS] [GO:0019058 "viral infectious
cycle" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0046778 "modification by virus of host mRNA
processing" evidence=TAS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0006936 EMBL:CH471078 GO:GO:0030529 GO:GO:0019058
GO:GO:0000398 eggNOG:NOG238057 HPA:HPA000637 Reactome:REACT_1788
GO:GO:0006369 GO:GO:0031124 HOVERGEN:HBG107480 Reactome:REACT_78
GO:GO:0046778 GO:GO:0016973 KO:K14396 HOGENOM:HOG000208465
OrthoDB:EOG4N04GD CTD:8106 OMA:RTTSWYS EMBL:AF026029 EMBL:BX247976
EMBL:BC010939 IPI:IPI00005792 IPI:IPI00414963 RefSeq:NP_004634.1
UniGene:Hs.707712 PDB:3B4D PDB:3B4M PDB:3UCG PDBsum:3B4D
PDBsum:3B4M PDBsum:3UCG ProteinModelPortal:Q86U42 SMR:Q86U42
IntAct:Q86U42 MINT:MINT-89761 STRING:Q86U42 PhosphoSite:Q86U42
DMDM:46403176 PaxDb:Q86U42 PRIDE:Q86U42 Ensembl:ENST00000216727
Ensembl:ENST00000397276 GeneID:8106 KEGG:hsa:8106 UCSC:uc001wjh.4
UCSC:uc001wjj.3 GeneCards:GC14P023789 HGNC:HGNC:8565 MIM:164300
MIM:602279 neXtProt:NX_Q86U42 Orphanet:270 PharmGKB:PA32891
InParanoid:Q86U42 PhylomeDB:Q86U42 EvolutionaryTrace:Q86U42
GenomeRNAi:8106 NextBio:30755 PMAP-CutDB:Q86U42 ArrayExpress:Q86U42
Bgee:Q86U42 CleanEx:HS_PABPN1 Genevestigator:Q86U42
GermOnline:ENSG00000100836 Uniprot:Q86U42
Length = 306
Score = 109 (43.4 bits), Expect = 0.00064, P = 0.00064
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEH 167
++ ++ R++YV ++D T E L F CG V + D S FA++EF+D+
Sbjct: 165 EKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 224
Query: 168 GARAALNLGGTMLGYYPVRVLPSKT 192
R +L L ++ ++V+P +T
Sbjct: 225 SVRTSLALDESLFRGRQIKVIPKRT 249
>UNIPROTKB|F2Z5L8 [details] [associations]
symbol:PABPN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 GO:GO:0016973 KO:K14396
GeneTree:ENSGT00390000001517 CTD:8106 OMA:RTTSWYS EMBL:CU633625
RefSeq:NP_001230477.1 UniGene:Ssc.16011 ProteinModelPortal:F2Z5L8
SMR:F2Z5L8 PRIDE:F2Z5L8 Ensembl:ENSSSCT00000002263 GeneID:100155260
KEGG:ssc:100155260 Uniprot:F2Z5L8
Length = 306
Score = 109 (43.4 bits), Expect = 0.00064, P = 0.00064
Identities = 24/85 (28%), Positives = 44/85 (51%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEH 167
++ ++ R++YV ++D T E L F CG V + D S FA++EF+D+
Sbjct: 165 EKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKE 224
Query: 168 GARAALNLGGTMLGYYPVRVLPSKT 192
R +L L ++ ++V+P +T
Sbjct: 225 SVRTSLALDESLFRGRQIKVIPKRT 249
>FB|FBgn0035016 [details] [associations]
symbol:CG4612 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
NextBio:806022 Uniprot:Q9W158
Length = 307
Score = 109 (43.4 bits), Expect = 0.00064, P = 0.00064
Identities = 29/121 (23%), Positives = 59/121 (48%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN-LG 176
+Y+ +++++I + + FS G +++C V D R + FV F E ARAA+ +
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS--RTVYCTNIDKKVPQAEVKQFF 234
G + V V+ F+PR + E+E + + +Y N+ ++ + +++ F
Sbjct: 175 GMLCNNQKVHVVK-----------FIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMF 223
Query: 235 E 235
E
Sbjct: 224 E 224
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 109 (43.4 bits), Expect = 0.00074, P = 0.00074
Identities = 37/133 (27%), Positives = 64/133 (48%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
L G+ R +QR+ +R++ +++ +++ +I + L FS+ G ++ C+V D H
Sbjct: 77 LKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG 136
Query: 155 VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR 214
F FV F A+ A+N TM G +L + + F R E E E+ +R
Sbjct: 137 SRGFGFVHFETHEAAQQAIN---TMNGM----LLNDRKVFVG---HFKSRREREAELGAR 186
Query: 215 TVYCTNID-KKVP 226
+ TNI K +P
Sbjct: 187 ALEFTNIYVKNLP 199
>UNIPROTKB|E5RH24 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00979703
ProteinModelPortal:E5RH24 SMR:E5RH24 Ensembl:ENST00000520142
ArrayExpress:E5RH24 Bgee:E5RH24 Uniprot:E5RH24
Length = 118
Score = 89 (36.4 bits), Expect = 0.00075, P = 0.00075
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSK 191
+ ++ PVR++ S+
Sbjct: 72 MNFDVIKGKPVRIMWSQ 88
>UNIPROTKB|Q6NVP7 [details] [associations]
symbol:pabpn1 "Polyadenylate-binding protein 2"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0008143 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OrthoDB:EOG4N04GD HSSP:P33240 CTD:8106
EMBL:CR761856 EMBL:BC067958 RefSeq:NP_001001230.1 UniGene:Str.8918
ProteinModelPortal:Q6NVP7 SMR:Q6NVP7 STRING:Q6NVP7
Ensembl:ENSXETT00000031935 GeneID:407911 KEGG:xtr:407911
Xenbase:XB-GENE-1007049 InParanoid:Q6NVP7 OMA:KELMGSK Bgee:Q6NVP7
Uniprot:Q6NVP7
Length = 296
Score = 108 (43.1 bits), Expect = 0.00078, P = 0.00078
Identities = 23/85 (27%), Positives = 45/85 (52%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEH 167
++ ++ R++YV ++D T E L F CG V + D ++ FA++EF+D+
Sbjct: 156 EKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKE 215
Query: 168 GARAALNLGGTMLGYYPVRVLPSKT 192
R +L L ++ ++V+P +T
Sbjct: 216 SVRTSLALDESLFRGRQIKVVPKRT 240
>DICTYBASE|DDB_G0275459 [details] [associations]
symbol:DDB_G0275459 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275459 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724 KO:K11294
RefSeq:XP_643642.1 ProteinModelPortal:Q75K16 STRING:Q75K16
PRIDE:Q75K16 EnsemblProtists:DDB0231494 GeneID:8620229
KEGG:ddi:DDB_G0275459 InParanoid:Q75K16 OMA:LRINGAN Uniprot:Q75K16
Length = 299
Score = 108 (43.1 bits), Expect = 0.00080, P = 0.00080
Identities = 39/130 (30%), Positives = 57/130 (43%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCG-DPHSVLRFAFVEFADEHGARAALNLGG 177
V+V + +TE L FS CG + + ++ +P V AF+ FADE G A+ G
Sbjct: 78 VFVGQLPSGVTEYDLKEYFSECGDISNIKILNSNPQRVA--AFITFADEKGRDTAITYNG 135
Query: 178 TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAA 237
+ L +N S+ E E T+ C NI V + VK+FF +
Sbjct: 136 KDF---------NGQGSLRINGANSKPSDGEGE--PTTIVCRNIAFTVDETLVKEFF-SK 183
Query: 238 CGGEVR-TLP 246
CG R +LP
Sbjct: 184 CGSISRVSLP 193
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 109 (43.4 bits), Expect = 0.00080, P = 0.00080
Identities = 33/108 (30%), Positives = 56/108 (51%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVL---PSKTAILPVN--PTFLPRSEDEREM 211
A+N L G L ++V PS +I N + LP++ ++E+
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 141
>UNIPROTKB|E5RGV5 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00974016
ProteinModelPortal:E5RGV5 SMR:E5RGV5 Ensembl:ENST00000474809
ArrayExpress:E5RGV5 Bgee:E5RGV5 Uniprot:E5RGV5
Length = 144
Score = 98 (39.6 bits), Expect = 0.00080, P = 0.00080
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
ED + +T+YV ++ +++TE + LFS G +C++ D + FVEF + A A
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAA 61
Query: 172 AL 173
AL
Sbjct: 62 AL 63
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 109 (43.4 bits), Expect = 0.00085, P = 0.00085
Identities = 33/108 (30%), Positives = 56/108 (51%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVL---PSKTAILPVN--PTFLPRSEDEREM 211
A+N L G L ++V PS +I N + LP++ ++E+
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 141
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 109 (43.4 bits), Expect = 0.00086, P = 0.00086
Identities = 33/108 (30%), Positives = 56/108 (51%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVL---PSKTAILPVN--PTFLPRSEDEREM 211
A+N L G L ++V PS +I N + LP++ ++E+
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 141
>RGD|1566367 [details] [associations]
symbol:Pabpc1l2a "poly(A) binding protein, cytoplasmic 1-like
2A" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1566367 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00640000091232
IPI:IPI00769098 Ensembl:ENSRNOT00000029100 Uniprot:F1M8Y9
Length = 200
Score = 104 (41.7 bits), Expect = 0.00090, P = 0.00090
Identities = 26/94 (27%), Positives = 49/94 (52%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
++GR R +QR+ S+R++ V++ ++ + I + L +FS+ G ++ C+V D
Sbjct: 68 INGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG 127
Query: 155 VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRV 187
+ FV F + A A++ L G L Y + V
Sbjct: 128 PKGYGFVHFQKQESAERAIDALNGMFLNYRKIFV 161
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 109 (43.4 bits), Expect = 0.00097, P = 0.00097
Identities = 33/108 (30%), Positives = 56/108 (51%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 63 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 121
Query: 170 RAALN-LGGTMLGYYPVRVL---PSKTAILPVN--PTFLPRSEDEREM 211
A+N L G L ++V PS +I N + LP++ ++E+
Sbjct: 122 EKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 169
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 109 (43.4 bits), Expect = 0.00097, P = 0.00097
Identities = 33/108 (30%), Positives = 56/108 (51%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 64 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 122
Query: 170 RAALN-LGGTMLGYYPVRVL---PSKTAILPVN--PTFLPRSEDEREM 211
A+N L G L ++V PS +I N + LP++ ++E+
Sbjct: 123 EKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 170
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 109 (43.4 bits), Expect = 0.00097, P = 0.00097
Identities = 33/108 (30%), Positives = 56/108 (51%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 64 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 122
Query: 170 RAALN-LGGTMLGYYPVRVL---PSKTAILPVN--PTFLPRSEDEREM 211
A+N L G L ++V PS +I N + LP++ ++E+
Sbjct: 123 EKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 170
>WB|WBGene00003904 [details] [associations]
symbol:pabp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040019
"positive regulation of embryonic development" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0006898 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0000003 GO:GO:0003676 GO:GO:0040019 EMBL:Z81037
eggNOG:NOG238057 KO:K14396 HOGENOM:HOG000208465
GeneTree:ENSGT00390000001517 OMA:FETEGQA PIR:T19356
RefSeq:NP_492504.1 ProteinModelPortal:Q93233 SMR:Q93233
DIP:DIP-26233N IntAct:Q93233 MINT:MINT-1047210 STRING:Q93233
PaxDb:Q93233 EnsemblMetazoa:C17E4.5.1 EnsemblMetazoa:C17E4.5.2
GeneID:172768 KEGG:cel:CELE_C17E4.5 UCSC:C17E4.5 CTD:172768
WormBase:C17E4.5 InParanoid:Q93233 NextBio:876929 Uniprot:Q93233
Length = 205
Score = 104 (41.7 bits), Expect = 0.00097, P = 0.00097
Identities = 26/88 (29%), Positives = 46/88 (52%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFA 164
++ ++ ++VYV ++D T E + F CG V + C R G P FA+VEF
Sbjct: 71 EKAEADAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKG---FAYVEFT 127
Query: 165 DEHGARAALNLGGTMLGYYPVRVLPSKT 192
++ G + AL + ++L ++V P +T
Sbjct: 128 EKEGMQNALAMTDSLLRGRQIKVDPKRT 155
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.136 0.405 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 264 213 0.00084 112 3 11 22 0.48 32
31 0.49 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 56
No. of states in DFA: 584 (62 KB)
Total size of DFA: 167 KB (2099 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.37u 0.08s 19.45t Elapsed: 00:00:01
Total cpu time: 19.37u 0.08s 19.45t Elapsed: 00:00:01
Start: Fri May 10 20:07:16 2013 End: Fri May 10 20:07:17 2013