BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024698
(264 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255578158|ref|XP_002529948.1| RNA-binding protein, putative [Ricinus communis]
gi|223530546|gb|EEF32425.1| RNA-binding protein, putative [Ricinus communis]
Length = 281
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 182/244 (74%), Positives = 210/244 (86%), Gaps = 6/244 (2%)
Query: 1 MAAVADMPGDAAAANNTNNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQ 60
MAAVA++ G+ A A+N N +++ SEF+VQKLVDMFTKLNPLAKEFFPS Y+
Sbjct: 1 MAAVAEITGEVAIASN-----NKKMDSDVKNSEFSVQKLVDMFTKLNPLAKEFFPSSYNN 55
Query: 61 H-TDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTV 119
+ H+F +NN +KQS IDNF++NRR+RNN+NQG++RL+GRA+RAQR+DS+RRTV
Sbjct: 56 NNITHNFLNLNNFAVVVDKQSPIDNFSSNRRKRNNYNQGKRRLNGRAYRAQRDDSIRRTV 115
Query: 120 YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTM 179
YVSDIDQ++TEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGT+
Sbjct: 116 YVSDIDQHVTEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTV 175
Query: 180 LGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
LGYYP RVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKK+ QAEVK FFE+ CG
Sbjct: 176 LGYYPFRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKISQAEVKTFFESTCG 235
Query: 240 GEVR 243
R
Sbjct: 236 EVTR 239
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLF-SSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RTVY ++ID+ I++ + F S+CG+V R+ GD R AFVEFA A ALN
Sbjct: 210 RTVYCTNIDKKISQAEVKTFFESTCGEVTRLRLLGDHVHSTRIAFVEFAMAESAIIALNC 269
Query: 176 GGTMLGYYPVR 186
G ++G P+R
Sbjct: 270 SGMVVGTQPIR 280
>gi|358248658|ref|NP_001240174.1| uncharacterized protein LOC100779109 [Glycine max]
gi|255639113|gb|ACU19856.1| unknown [Glycine max]
Length = 296
Score = 364 bits (935), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 178/248 (71%), Positives = 206/248 (83%), Gaps = 16/248 (6%)
Query: 1 MAAVADMPGDAAAANNTNNNKNNNLETK-KSESEFTVQKLVDMFTKLNPLAKEFFPSYYH 59
MAAVA++P DA N +++K K+ESEF+VQKLVDMFTKLNPLAKEFFPS Y
Sbjct: 1 MAAVAEIPADA-----------NKMDSKPKAESEFSVQKLVDMFTKLNPLAKEFFPSSYS 49
Query: 60 QHTDHHFSVINN----NFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSV 115
+ DH F N F K SA +NF N+RRRRN+FNQGR+R+SGR+ +AQREDS+
Sbjct: 50 PNHDHGFQGFNQLSPTQFLVSTKPSANENFLNSRRRRNSFNQGRRRVSGRSLKAQREDSI 109
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RRTVYVS+IDQ++TEERLA LFSSCGQV+DCR+CGDPHSVLRFAFVEFADE+GAR ALNL
Sbjct: 110 RRTVYVSEIDQHVTEERLAALFSSCGQVIDCRICGDPHSVLRFAFVEFADEYGARTALNL 169
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
GGT+LGYYPVRVLPSKTAILPVNPTFLPRS+DEREMC+RT+YCTNIDKKV QAEVK FFE
Sbjct: 170 GGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCARTIYCTNIDKKVSQAEVKNFFE 229
Query: 236 AACGGEVR 243
+ACG +R
Sbjct: 230 SACGEVMR 237
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLF-SSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +++ + F S+CG+V+ R+ GD R AFVEFA A ALN
Sbjct: 208 RTIYCTNIDKKVSQAEVKNFFESACGEVMRLRLLGDQVHSTRIAFVEFAMAESAIIALNC 267
Query: 176 GGTMLGYYPVRVLPSKTAILPVNP 199
G +LG P+RV PSKT + P P
Sbjct: 268 SGMLLGTQPIRVSPSKTPVRPRVP 291
>gi|224056565|ref|XP_002298913.1| predicted protein [Populus trichocarpa]
gi|222846171|gb|EEE83718.1| predicted protein [Populus trichocarpa]
Length = 307
Score = 364 bits (934), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 188/254 (74%), Positives = 208/254 (81%), Gaps = 17/254 (6%)
Query: 1 MAAVADMPGDAAAANNTNNNKNN--------NLETK-KSESEFTVQKLVDMFTKLNPLAK 51
MAAVA++ +AA A+N N + ETK SESEFTVQKLVDMFTKLNPLAK
Sbjct: 1 MAAVAEITSEAAVASNNTTTAANKNDNNNNLDSETKPTSESEFTVQKLVDMFTKLNPLAK 60
Query: 52 EFFPSYYHQHT--DHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRA 109
EFFPS Y ++ + HF NNFA KQSA DNF +R+RNNFNQGR++L+GRA+RA
Sbjct: 61 EFFPSSYSKNNPNELHF----NNFAVPVKQSANDNFP--KRKRNNFNQGRRKLNGRAYRA 114
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGA 169
Q+EDS+RRTVYVSDIDQ++TEERLAGLFS CGQVVDCRVCGDPHSVLRFAFVEFADE GA
Sbjct: 115 QQEDSIRRTVYVSDIDQHVTEERLAGLFSGCGQVVDCRVCGDPHSVLRFAFVEFADEQGA 174
Query: 170 RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC+RTVYCTNIDKKV Q E
Sbjct: 175 RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCTRTVYCTNIDKKVSQVE 234
Query: 230 VKQFFEAACGGEVR 243
VK FFE+ CG R
Sbjct: 235 VKNFFESICGEVTR 248
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RTVY ++ID+ +++ + F S CG+V R+ GD R AFVEFA A ALN
Sbjct: 219 RTVYCTNIDKKVSQVEVKNFFESICGEVTRLRLLGDQVHSTRIAFVEFAMAESAIVALNC 278
Query: 176 GGTMLGYYPVRVLPSKTAILP 196
G LG PVRV PSKT + P
Sbjct: 279 SGMALGSQPVRVSPSKTPVRP 299
>gi|224114547|ref|XP_002316790.1| predicted protein [Populus trichocarpa]
gi|222859855|gb|EEE97402.1| predicted protein [Populus trichocarpa]
Length = 308
Score = 353 bits (905), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 172/215 (80%), Positives = 190/215 (88%), Gaps = 4/215 (1%)
Query: 29 KSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNN 88
KSESEFTVQKLVDMFTKLNPLAKEFFPS Y+++ F + NNF NKQSA DNF
Sbjct: 39 KSESEFTVQKLVDMFTKLNPLAKEFFPSSYNKNNPKQFHI--NNFPVPNKQSANDNFP-- 94
Query: 89 RRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV 148
+RRRN+FNQGR+RL+GRA+RAQREDS+RRTVYVSDIDQ++TEE+LAGLFS CGQVVDCR+
Sbjct: 95 KRRRNDFNQGRRRLNGRAYRAQREDSIRRTVYVSDIDQHVTEEQLAGLFSGCGQVVDCRI 154
Query: 149 CGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDE 208
CGDP SVLRFAFVEFA E GARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLP+SEDE
Sbjct: 155 CGDPRSVLRFAFVEFAVEQGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPQSEDE 214
Query: 209 REMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVR 243
REMC+RTVYCTNI+KKV QAEVK FFE+ CG R
Sbjct: 215 REMCTRTVYCTNIEKKVSQAEVKNFFESICGEVTR 249
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 107 FRAQREDS---VRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVE 162
F Q ED RTVY ++I++ +++ + F S CG+V R+ GD R AFVE
Sbjct: 207 FLPQSEDEREMCTRTVYCTNIEKKVSQAEVKNFFESICGEVTRLRLLGDHVHSTRIAFVE 266
Query: 163 FADEHGARAALNLGGTMLGYYPVRVLPSKTAILP 196
FA A ALN G +LG PVRV PSKT + P
Sbjct: 267 FAMAESAIVALNCSGMVLGSQPVRVSPSKTPVRP 300
>gi|356556922|ref|XP_003546769.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Glycine max]
Length = 296
Score = 347 bits (889), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 178/248 (71%), Positives = 207/248 (83%), Gaps = 16/248 (6%)
Query: 1 MAAVADMPGDAAAANNTNNNKNNNLETK-KSESEFTVQKLVDMFTKLNPLAKEFFPSYYH 59
MAAVA++P DA N +++K K+ESEF+VQKLVDMFTKLNPLAKEFFPS Y
Sbjct: 1 MAAVAEIPADA-----------NKMDSKPKAESEFSVQKLVDMFTKLNPLAKEFFPSSYS 49
Query: 60 QHTDHHFSVIN----NNFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSV 115
+ D+ F N +F K SA +NF NNRRRRN+FNQGR+++SGR+ +AQREDS+
Sbjct: 50 PNHDNRFQGFNQLSPTHFLVSTKPSADENFPNNRRRRNSFNQGRRKVSGRSLKAQREDSI 109
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RRTVYVS+IDQ++TEERLA LFSSCGQV+DCR+CGDPHSVLRFAFVEFADE+GAR ALNL
Sbjct: 110 RRTVYVSEIDQHVTEERLAALFSSCGQVIDCRICGDPHSVLRFAFVEFADEYGARTALNL 169
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
GGT+LGYYPVRVLPSKTAILPVNPTFLPRS+DEREMC+RTVYCTNIDKKV QAEVK FFE
Sbjct: 170 GGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCARTVYCTNIDKKVSQAEVKNFFE 229
Query: 236 AACGGEVR 243
+ACG +R
Sbjct: 230 SACGEVMR 237
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLF-SSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RTVY ++ID+ +++ + F S+CG+V+ R+ GD R AFVEFA A ALN
Sbjct: 208 RTVYCTNIDKKVSQAEVKNFFESACGEVMRLRLLGDHVHSTRIAFVEFAMAESAIIALNC 267
Query: 176 GGTMLGYYPVRVLPSKTAILP 196
G +LG P+RV PSKT + P
Sbjct: 268 SGMLLGTQPIRVSPSKTPVRP 288
>gi|15231858|ref|NP_188063.1| CTC-interacting domain 9 protein [Arabidopsis thaliana]
gi|11994215|dbj|BAB01337.1| unnamed protein product [Arabidopsis thaliana]
gi|332642006|gb|AEE75527.1| CTC-interacting domain 9 protein [Arabidopsis thaliana]
Length = 327
Score = 315 bits (808), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 150/225 (66%), Positives = 180/225 (80%), Gaps = 10/225 (4%)
Query: 29 KSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVIN-----NNFADDNKQSAID 83
++ES + KLV MF KLNPLAKEFFPSYY ++ + N ++F KQS +
Sbjct: 43 ETESRLDMHKLVAMFKKLNPLAKEFFPSYYDPKKNNQVAKANQFLPADDFETTKKQSGEE 102
Query: 84 -----NFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFS 138
++N R+R N++QGR+RL+GR +AQREDS+RRTVYVSDIDQ++TEE LAGLFS
Sbjct: 103 FDLDAKKDDNTRKRRNYSQGRRRLTGRISKAQREDSIRRTVYVSDIDQSVTEEGLAGLFS 162
Query: 139 SCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVN 198
+CGQVVDCR+CGDPHSVLRFAFVEFAD+ GA AL+LGGTMLG+YPVRVLPSKTAILPVN
Sbjct: 163 NCGQVVDCRICGDPHSVLRFAFVEFADDQGAHEALSLGGTMLGFYPVRVLPSKTAILPVN 222
Query: 199 PTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVR 243
PTFLPRSEDEREMC+RT+YCTNIDKKV QA+V+ FFE+ACG R
Sbjct: 223 PTFLPRSEDEREMCTRTIYCTNIDKKVSQADVRNFFESACGEVTR 267
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLF-SSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +++ + F S+CG+V R+ GD R AFVEFA A +ALN
Sbjct: 238 RTIYCTNIDKKVSQADVRNFFESACGEVTRLRLLGDQLHSTRIAFVEFALADSALSALNC 297
Query: 176 GGTMLGYYPVRVLPSKTAILP 196
G ++G P+RV PSKT + P
Sbjct: 298 SGMVVGSQPIRVSPSKTPVRP 318
>gi|225462109|ref|XP_002277842.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and nuclear
[Vitis vinifera]
gi|296088694|emb|CBI38144.3| unnamed protein product [Vitis vinifera]
Length = 292
Score = 313 bits (801), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 178/244 (72%), Positives = 197/244 (80%), Gaps = 20/244 (8%)
Query: 1 MAAVADMPGDAAAANNTNNNKNNNLETKKSESEFTV---QKLVDMFT--KLNPLAKEFFP 55
MAA A+M G+A A ++ N + S+SEF +VDM + KLNPLAKEFFP
Sbjct: 1 MAAGAEMSGEAVPAVPSSKNSD-------SKSEFGAGMQSMIVDMLSNLKLNPLAKEFFP 53
Query: 56 SYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSV 115
S Y DH +I +F+ D+ D + NNRRRRNN+NQGR+RLSGRAFRAQREDS+
Sbjct: 54 SSYSH--DH---LIPTDFSKDSPN---DAYPNNRRRRNNYNQGRRRLSGRAFRAQREDSI 105
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RRTVYVSDIDQ++TEERLA LFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL
Sbjct: 106 RRTVYVSDIDQHVTEERLAALFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 165
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC+RTVYCTNIDKKV QAEVK FFE
Sbjct: 166 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCARTVYCTNIDKKVSQAEVKNFFE 225
Query: 236 AACG 239
ACG
Sbjct: 226 RACG 229
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFS-SCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RTVY ++ID+ +++ + F +CG+V R+ GD R AFVEFA A ALN
Sbjct: 204 RTVYCTNIDKKVSQAEVKNFFERACGEVSRLRLLGDHVHSTRIAFVEFAMAESAIVALNC 263
Query: 176 GGTMLGYYPVRVLPSKTAILPVNP 199
G +LG P+RV PSKT + P P
Sbjct: 264 SGLVLGTQPIRVSPSKTPVRPRVP 287
>gi|147818437|emb|CAN60729.1| hypothetical protein VITISV_013180 [Vitis vinifera]
Length = 642
Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 139/149 (93%), Positives = 145/149 (97%)
Query: 91 RRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCG 150
RRNN+NQGR+RLSGRAFRAQREDS+RRTVYVSDIDQ++TEERLA LFSSCGQVVDCRVCG
Sbjct: 324 RRNNYNQGRRRLSGRAFRAQREDSIRRTVYVSDIDQHVTEERLAALFSSCGQVVDCRVCG 383
Query: 151 DPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDERE 210
DPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDERE
Sbjct: 384 DPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDERE 443
Query: 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
MC+RTVYCTNIDKKV QAEVK FFE ACG
Sbjct: 444 MCARTVYCTNIDKKVSQAEVKNFFERACG 472
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 52/95 (54%), Gaps = 20/95 (21%)
Query: 1 MAAVADMPGDAAAANNTNNNKNNNLETKKSESEFTV---QKLVDMFT--KLNPLAKEFFP 55
MAA A+M G+A A ++ N + S+SEF +VDM + KLNPLAKEFFP
Sbjct: 1 MAAGAEMSGEAVPAVPSSKNSD-------SKSEFGAGMQSMIVDMLSNLKLNPLAKEFFP 53
Query: 56 SYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRR 90
S Y DH +I +F+ D+ D + NNRR
Sbjct: 54 SSYSH--DH---LIPTDFSKDSPN---DAYPNNRR 80
Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 117 RTVYVSDIDQNITEERLAGLFS-SCGQVVDCRVCGDPHSVLRFAFVEFA 164
RTVY ++ID+ +++ + F +CG+V R+ GD R AFVEFA
Sbjct: 447 RTVYCTNIDKKVSQAEVKNFFERACGEVSRLRLLGDHVHSTRIAFVEFA 495
>gi|79319864|ref|NP_001031182.1| CTC-interacting domain 8 protein [Arabidopsis thaliana]
gi|332194856|gb|AEE32977.1| CTC-interacting domain 8 protein [Arabidopsis thaliana]
Length = 308
Score = 300 bits (768), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 154/258 (59%), Positives = 190/258 (73%), Gaps = 25/258 (9%)
Query: 1 MAAVADMPGDAAAANN---TNNNKNNNLETK----------KSESEF-TVQKLVDMFTKL 46
MAA+ +M D+ N T + + ++K KS+ E+ ++KLV MF KL
Sbjct: 1 MAAITEMATDSNDVINDGGTGDGIEKSTDSKPEIESDDLKPKSKPEYDQMKKLVAMFKKL 60
Query: 47 NPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRK-RLSGR 105
NP AKEFFPSY N N +DD + + +N++RRNN+NQGR+ RL GR
Sbjct: 61 NPEAKEFFPSYKR----------NTNQSDDFVIAIKPSGEDNKKRRNNYNQGRRVRLPGR 110
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD 165
A +AQREDS+RRTVYVSDIDQ++TEE LAGLFSSCGQVVDCR+CGDP+SVLRFAFVEF+D
Sbjct: 111 ASKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRFAFVEFSD 170
Query: 166 EHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ GAR+AL+LGGTM+GYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT+YCTN+DK
Sbjct: 171 DQGARSALSLGGTMIGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTIYCTNVDKNA 230
Query: 226 PQAEVKQFFEAACGGEVR 243
+ +V FF++ACG R
Sbjct: 231 TEDDVNTFFQSACGEVTR 248
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLF-SSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y +++D+N TE+ + F S+CG+V R+ GD R AFVEFA A AALN
Sbjct: 219 RTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVHSTRIAFVEFAMAESAVAALNC 278
Query: 176 GGTMLGYYPVRVLPSKTAI 194
G +LG P+RV PSKT +
Sbjct: 279 SGIVLGSQPIRVSPSKTPV 297
>gi|388509636|gb|AFK42884.1| unknown [Lotus japonicus]
Length = 313
Score = 300 bits (767), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 169/255 (66%), Positives = 197/255 (77%), Gaps = 14/255 (5%)
Query: 1 MAAVADMPGDAAAANNTNNNKNNNLETKKS-ESEFTVQKLVDMFTKLNPLAKEFFPSYYH 59
MAA ++P ++A + L++K + +SEF +QKLVD+FTKLNPLA+EF PS Y
Sbjct: 1 MAAATEIP--SSADAAAAAATGSKLDSKPNLDSEFNMQKLVDIFTKLNPLAEEFIPSSYA 58
Query: 60 Q--HTDHHFSVIN----NNF---ADDNKQSAIDNF--NNNRRRRNNFNQGRKRLSGRAFR 108
H DH N N F ++NK A D + NNRRRRNNFNQG +R +GR +
Sbjct: 59 AAAHRDHLHQGFNQWSPNPFLVNNNNNKPLADDQYPNANNRRRRNNFNQGGRRFTGRVLK 118
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHG 168
AQREDSVRRTVYVSDIDQ++TEERLA LF++CG V+DCR+CGDPHSVLRFAFVEFADE+G
Sbjct: 119 AQREDSVRRTVYVSDIDQHVTEERLAALFTTCGSVIDCRICGDPHSVLRFAFVEFADEYG 178
Query: 169 ARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
ARAALNL GT+LGYYPVRVLPSKTAILPVNPTFLPRS+DEREMCSRTVYCTNIDKKV QA
Sbjct: 179 ARAALNLSGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKVSQA 238
Query: 229 EVKQFFEAACGGEVR 243
EVK FFE +CG R
Sbjct: 239 EVKNFFEISCGEVTR 253
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFS-SCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RTVY ++ID+ +++ + F SCG+V R+ GD R AFVEFA A AL+
Sbjct: 224 RTVYCTNIDKKVSQAEVKNFFEISCGEVTRIRLLGDHVHSTRIAFVEFAIAESAIIALSC 283
Query: 176 GGTMLGYYPVRVLPSKTAILPVNP 199
G +LG PVRV PSKT + P P
Sbjct: 284 SGMLLGTQPVRVSPSKTPVRPRVP 307
>gi|51969708|dbj|BAD43546.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|51970080|dbj|BAD43732.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 295
Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 146/217 (67%), Positives = 175/217 (80%), Gaps = 12/217 (5%)
Query: 29 KSESEF-TVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNN 87
KS+ E+ ++KLV MF KLNP AKEFFPSY N N +DD + + +
Sbjct: 29 KSKPEYDQMKKLVAMFKKLNPEAKEFFPSYKR----------NTNQSDDFVIAIKPSGED 78
Query: 88 NRRRRNNFNQGRK-RLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDC 146
N++RRNN+NQGR+ RL GRA +AQREDS+RRTVYVSDIDQ++TEE LAGLFSSCGQVVDC
Sbjct: 79 NKKRRNNYNQGRRVRLPGRASKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDC 138
Query: 147 RVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSE 206
R+CGDP+SVLRFAFVEF+D+ GAR+AL+LGGTM+GYYPVRVLPSKTAILPVNPTFLPRSE
Sbjct: 139 RICGDPNSVLRFAFVEFSDDQGARSALSLGGTMIGYYPVRVLPSKTAILPVNPTFLPRSE 198
Query: 207 DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVR 243
DEREMCSRT+YCTN+DK + +V FF++ACG R
Sbjct: 199 DEREMCSRTIYCTNVDKNATEDDVNTFFQSACGEVTR 235
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLF-SSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y +++D+N TE+ + F S+CG+V R+ GD R AFVEFA A AALN
Sbjct: 206 RTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVHSTRIAFVEFAMAESAVAALNC 265
Query: 176 GGTMLGYYPVRVLPSKTAI 194
G +LG P+RV PSKT +
Sbjct: 266 SGIVLGSQPIRVSPSKTPV 284
>gi|116781618|gb|ABK22180.1| unknown [Picea sitchensis]
Length = 288
Score = 291 bits (744), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 141/206 (68%), Positives = 167/206 (81%), Gaps = 17/206 (8%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNN--FADDNKQSAIDNFNNNRRRRN 93
+++LVD+ +KLNPLA+EF P H F +IN N FA NN+RR++N
Sbjct: 35 MRELVDLLSKLNPLAEEFIP---QPHRSPSF-IINGNGSFA-----------NNSRRKKN 79
Query: 94 NFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH 153
NFNQG++RL+GR RAQ+EDSVRRTVYV DID +TEE+LA LF +CGQV+DCR+CGDP+
Sbjct: 80 NFNQGKRRLNGRNIRAQQEDSVRRTVYVCDIDHQVTEEQLAALFINCGQVIDCRICGDPN 139
Query: 154 SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
SVLRFAF+EFADE GARAAL+L GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC+
Sbjct: 140 SVLRFAFIEFADEQGARAALSLAGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCA 199
Query: 214 RTVYCTNIDKKVPQAEVKQFFEAACG 239
RT+YCTNIDKKV Q EV+ FFE+ CG
Sbjct: 200 RTIYCTNIDKKVSQVEVRMFFESLCG 225
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +++ + F S CG+V R+ GD R AFVEF A ALN
Sbjct: 200 RTIYCTNIDKKVSQVEVRMFFESLCGEVSRLRLLGDHVHSTRIAFVEFVMAESAILALNC 259
Query: 176 GGTMLGYYPVRVLPSKTAILPVNP 199
G ++G P+RV PSKT + P P
Sbjct: 260 SGAIVGSLPIRVSPSKTPVRPRIP 283
>gi|449438949|ref|XP_004137250.1| PREDICTED: protein MEI2-like 2-like [Cucumis sativus]
gi|449483120|ref|XP_004156498.1| PREDICTED: protein MEI2-like 2-like [Cucumis sativus]
Length = 306
Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 150/251 (59%), Positives = 181/251 (72%), Gaps = 15/251 (5%)
Query: 1 MAAVADMPGDAAAANNTNNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQ 60
MAAVA+ +AAA N + N N +SEF KL +MF+ LNPLAKEFFPS Y
Sbjct: 1 MAAVAEDSSEAAAVKNFDPNMN-------PKSEFDAHKLAEMFSNLNPLAKEFFPSSYSH 53
Query: 61 H--TDHHFSVINNNFADDNKQSAIDNF---NNNRRRRNNFN-QGRKRLSG-RAFRAQRED 113
H D HF NNN + D +NNRRRR FN QGR+R++ R+ RAQ+E+
Sbjct: 54 HDRQDFHFYYQNNNRSLAKNFQVADQLLHSDNNRRRRPEFNNQGRRRMNNNRSVRAQQEE 113
Query: 114 SVRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
S+RRTVYVSDID++++EE LA +F CG V DCR+CGDPHSVLRFAFVEFA+EH ARAA
Sbjct: 114 SIRRTVYVSDIDKDVSEEELAKVFREFCGYVNDCRICGDPHSVLRFAFVEFANEHSARAA 173
Query: 173 LNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
+ L GT++G YPV+VLPSKTAILPVNPTFLP+S DE +MC+RT+YCTNIDKKV QAEVK
Sbjct: 174 VGLSGTVVGSYPVKVLPSKTAILPVNPTFLPKSNDEWDMCTRTIYCTNIDKKVSQAEVKS 233
Query: 233 FFEAACGGEVR 243
FFE +CG R
Sbjct: 234 FFETSCGEVTR 244
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLF-SSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D RT+Y ++ID+ +++ + F +SCG+V R+ GD R AFVEFA A
Sbjct: 211 DMCTRTIYCTNIDKKVSQAEVKSFFETSCGEVTRLRLLGDQLHSTRIAFVEFALAETALQ 270
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILP 196
ALN G +LG P+RV PSKT + P
Sbjct: 271 ALNCSGMILGAQPIRVSPSKTPVRP 295
>gi|297829996|ref|XP_002882880.1| ctc-interacting domain 9 [Arabidopsis lyrata subsp. lyrata]
gi|297328720|gb|EFH59139.1| ctc-interacting domain 9 [Arabidopsis lyrata subsp. lyrata]
Length = 337
Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 142/227 (62%), Positives = 171/227 (75%), Gaps = 12/227 (5%)
Query: 29 KSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVIN-----NNFADDNKQSAID 83
K +SEF +QKLV MF KLNPLAKEFFPSYY +HH N ++FA NKQS +
Sbjct: 51 KPKSEFDMQKLVAMFKKLNPLAKEFFPSYYDPKKNHHVGKANQFLSADDFATTNKQSGEE 110
Query: 84 -----NFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFS 138
++N R+R N++QGR+RL+GR +AQREDS+RRTVYVSDIDQ++TEE LAGLFS
Sbjct: 111 FDPDAKKDDNTRKRRNYSQGRRRLTGRISKAQREDSIRRTVYVSDIDQSVTEEGLAGLFS 170
Query: 139 SCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRV--LPSKTAILP 196
+CGQVVDCR+CGDPHSVLRFAFVEFAD+ GAR AL+LGGTMLG+YPVRV S +
Sbjct: 171 NCGQVVDCRICGDPHSVLRFAFVEFADDQGAREALSLGGTMLGFYPVRVKNCHSTSESHI 230
Query: 197 VNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVR 243
+ SEDEREMC+RT+YCTNIDKKV QA+V+ FFE+ACG R
Sbjct: 231 SSKGKCSDSEDEREMCTRTIYCTNIDKKVSQADVRNFFESACGEVTR 277
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLF-SSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +++ + F S+CG+V R+ GD R AFVEF A ALN
Sbjct: 248 RTIYCTNIDKKVSQADVRNFFESACGEVTRLRLLGDQLHSTRIAFVEFTLADSALRALNC 307
Query: 176 GGTMLGYYPVRVLPSKTAILP 196
G ++G P+RV PSKT + P
Sbjct: 308 SGMVVGSQPIRVSPSKTPVRP 328
>gi|255582539|ref|XP_002532053.1| RNA-binding protein, putative [Ricinus communis]
gi|223528275|gb|EEF30325.1| RNA-binding protein, putative [Ricinus communis]
Length = 385
Score = 283 bits (724), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 141/228 (61%), Positives = 175/228 (76%), Gaps = 7/228 (3%)
Query: 22 NNNLETKKSESEFT-VQKLVDMFTKLNPLAKEFFPSYY---HQHTDHHFSVINNNFADDN 77
N+ ++ KS++ + LV++ + LNP+AKEF P H + + F NN A N
Sbjct: 103 NHQIQRAKSDNGLNDMSDLVEILSNLNPMAKEFVPPSLVNNHGYLGNGFGYTNNFPAQTN 162
Query: 78 KQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLF 137
+AI N +R++N+FNQGR+R++ R AQRED +RRTVYVSDIDQ +TEE+LAGLF
Sbjct: 163 PGNAIGN--TIKRKKNSFNQGRRRMNTRTSMAQREDVIRRTVYVSDIDQQVTEEQLAGLF 220
Query: 138 SSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPV 197
CGQVVDCR+CGDP+SVLRFAF+EF DE GARAALNL GT+LG+YP+RVLPSKTAI PV
Sbjct: 221 VHCGQVVDCRICGDPNSVLRFAFIEFTDEEGARAALNLSGTVLGFYPLRVLPSKTAIAPV 280
Query: 198 NPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTL 245
NPTFLPRSEDEREMC+RTVYCTNIDKKV QA+V+ FFE+ C GEV+ L
Sbjct: 281 NPTFLPRSEDEREMCARTVYCTNIDKKVTQADVRLFFESFC-GEVQRL 327
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 53/90 (58%), Gaps = 5/90 (5%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RTVY ++ID+ +T+ + F S CG+V R+ GD H R AFVEF A ALN
Sbjct: 297 RTVYCTNIDKKVTQADVRLFFESFCGEVQRLRLLGDYHHSTRIAFVEFTVAESAILALNC 356
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRS 205
G +LG P+RV PSKT PV P +PRS
Sbjct: 357 SGAVLGSLPIRVSPSKT---PVRPR-IPRS 382
>gi|168046548|ref|XP_001775735.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672887|gb|EDQ59418.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 256
Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 137/209 (65%), Positives = 161/209 (77%), Gaps = 13/209 (6%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNF 95
+++L D+ TKLNPLAKEF P H D A S++ + R++N F
Sbjct: 1 MRELEDLLTKLNPLAKEFVPP---SHAD---------LASTTAPSSVASSKGQPRKKNGF 48
Query: 96 NQ-GRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
NQ ++R++ R RAQREDS+RRTVYVSDIDQ +TEE+LA LF +CGQVVDCRVCGDP+S
Sbjct: 49 NQVNKRRVNSRTSRAQREDSIRRTVYVSDIDQQVTEEQLAALFITCGQVVDCRVCGDPNS 108
Query: 155 VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR 214
VLRFAFVEF DE GARAAL+L GTMLGYYPVRVLPSKTAI+PVNPTFLPRSEDEREMC+R
Sbjct: 109 VLRFAFVEFTDEEGARAALSLAGTMLGYYPVRVLPSKTAIVPVNPTFLPRSEDEREMCAR 168
Query: 215 TVYCTNIDKKVPQAEVKQFFEAACGGEVR 243
T+YCTNIDKKV QA+VK FFE+ CG R
Sbjct: 169 TIYCTNIDKKVSQADVKLFFESLCGEVAR 197
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +++ + F S CG+V R+ GD H R AFVEF A AALN
Sbjct: 168 RTIYCTNIDKKVSQADVKLFFESLCGEVARLRLLGDYHHSTRIAFVEFVMAESAMAALNC 227
Query: 176 GGTMLGYYPVRVLPSKTAILPVNP 199
G +LG P+RV PSKT + P +P
Sbjct: 228 SGAILGSLPIRVSPSKTPVRPRSP 251
>gi|15220902|ref|NP_175769.1| CTC-interacting domain 8 protein [Arabidopsis thaliana]
gi|12324022|gb|AAG51971.1|AC024260_9 RNA-binding protein, putative; 40942-42923 [Arabidopsis thaliana]
gi|48427656|gb|AAT42377.1| At1g53650 [Arabidopsis thaliana]
gi|332194855|gb|AEE32976.1| CTC-interacting domain 8 protein [Arabidopsis thaliana]
Length = 314
Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 150/258 (58%), Positives = 184/258 (71%), Gaps = 19/258 (7%)
Query: 1 MAAVADMPGDAAAANN---TNNNKNNNLETK----------KSESEF-TVQKLVDMFTKL 46
MAA+ +M D+ N T + + ++K KS+ E+ ++KLV MF KL
Sbjct: 1 MAAITEMATDSNDVINDGGTGDGIEKSTDSKPEIESDDLKPKSKPEYDQMKKLVAMFKKL 60
Query: 47 NPLAKEFFPSYY-HQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGR 105
NP AKEFFPSY + + F + +DNK+ AI+ N N R RL GR
Sbjct: 61 NPEAKEFFPSYKRNTNQSDDFVIAIKPSGEDNKKVAINRRRRN----NYNQGRRVRLPGR 116
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD 165
A +AQREDS+RRTVYVSDIDQ++TEE LAGLFSSCGQVVDCR+CGDP+SVLRFAFVEF+D
Sbjct: 117 ASKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRFAFVEFSD 176
Query: 166 EHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ GAR+AL+LGGTM+GYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT+YCTN+DK
Sbjct: 177 DQGARSALSLGGTMIGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTIYCTNVDKNA 236
Query: 226 PQAEVKQFFEAACGGEVR 243
+ +V FF++ACG R
Sbjct: 237 TEDDVNTFFQSACGEVTR 254
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLF-SSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y +++D+N TE+ + F S+CG+V R+ GD R AFVEFA A AALN
Sbjct: 225 RTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVHSTRIAFVEFAMAESAVAALNC 284
Query: 176 GGTMLGYYPVRVLPSKTAI 194
G +LG P+RV PSKT +
Sbjct: 285 SGIVLGSQPIRVSPSKTPV 303
>gi|147804944|emb|CAN62612.1| hypothetical protein VITISV_033249 [Vitis vinifera]
Length = 369
Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 133/221 (60%), Positives = 167/221 (75%), Gaps = 9/221 (4%)
Query: 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSA 81
N + +S +++L ++F+KLNP+A+EF P + +N F + ++
Sbjct: 121 NGGXLQRNGDSGVDMRELQELFSKLNPMAEEFVPPSLANNG------LNGGFYSNGSETH 174
Query: 82 IDNFN---NNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFS 138
+ N N RR++NNF QG++R++ R AQRE+ +RRTVYVSDIDQ +TEE+LA LF
Sbjct: 175 NNTRNGQVNGRRKKNNFGQGKRRMNSRTSMAQREEIIRRTVYVSDIDQQVTEEKLAALFI 234
Query: 139 SCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVN 198
+CGQVVDCRVCGDP+SVLRFAFVEF DE GARAAL+L GTMLGYYPVRVLPSKTAI PVN
Sbjct: 235 TCGQVVDCRVCGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGYYPVRVLPSKTAIAPVN 294
Query: 199 PTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
PTFLPR+EDEREMC+RT+YCTNIDKKV QA+VK FFE+ CG
Sbjct: 295 PTFLPRNEDEREMCARTIYCTNIDKKVSQADVKLFFESVCG 335
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEF 163
RT+Y ++ID+ +++ + F S CG+V R+ GD H R AFVEF
Sbjct: 310 RTIYCTNIDKKVSQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEF 357
>gi|359474160|ref|XP_002272303.2| PREDICTED: polyadenylate-binding protein [Vitis vinifera]
Length = 398
Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 132/215 (61%), Positives = 166/215 (77%), Gaps = 9/215 (4%)
Query: 28 KKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFN- 86
+ +S +++L ++F+KLNP+A+EF P + +N F + ++ + N
Sbjct: 127 RNGDSGVDMRELQELFSKLNPMAEEFVPPSLANNG------LNGGFYSNGSETHNNTRNG 180
Query: 87 --NNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVV 144
N RR++NNF QG++R++ R AQRE+ +RRTVYVSDIDQ +TEE+LA LF +CGQVV
Sbjct: 181 QVNGRRKKNNFGQGKRRMNSRTSMAQREEIIRRTVYVSDIDQQVTEEKLAALFITCGQVV 240
Query: 145 DCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPR 204
DCRVCGDP+SVLRFAFVEF DE GARAAL+L GTMLGYYPVRVLPSKTAI PVNPTFLPR
Sbjct: 241 DCRVCGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGYYPVRVLPSKTAIAPVNPTFLPR 300
Query: 205 SEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
+EDEREMC+RT+YCTNIDKKV QA+VK FFE+ CG
Sbjct: 301 NEDEREMCARTIYCTNIDKKVSQADVKLFFESVCG 335
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +++ + F S CG+V R+ GD H R AFVEF A AALN
Sbjct: 310 RTIYCTNIDKKVSQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFIMAESAIAALNC 369
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTF 201
G +LG P+RV PSKT + P P
Sbjct: 370 SGVVLGSLPIRVSPSKTPVRPRAPRL 395
>gi|297742454|emb|CBI34603.3| unnamed protein product [Vitis vinifera]
Length = 397
Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 134/218 (61%), Positives = 164/218 (75%), Gaps = 16/218 (7%)
Query: 28 KKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNN 87
+ +S +++L ++F+KLNP+A+EF P S+ NN + + NN
Sbjct: 127 RNGDSGVDMRELQELFSKLNPMAEEFVPP----------SLANNGLNGGFYSNGSETHNN 176
Query: 88 NR------RRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCG 141
R RR+NNF QG++R++ R AQRE+ +RRTVYVSDIDQ +TEE+LA LF +CG
Sbjct: 177 TRNGQVNGRRKNNFGQGKRRMNSRTSMAQREEIIRRTVYVSDIDQQVTEEKLAALFITCG 236
Query: 142 QVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTF 201
QVVDCRVCGDP+SVLRFAFVEF DE GARAAL+L GTMLGYYPVRVLPSKTAI PVNPTF
Sbjct: 237 QVVDCRVCGDPNSVLRFAFVEFTDEEGARAALSLAGTMLGYYPVRVLPSKTAIAPVNPTF 296
Query: 202 LPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
LPR+EDEREMC+RT+YCTNIDKKV QA+VK FFE+ CG
Sbjct: 297 LPRNEDEREMCARTIYCTNIDKKVSQADVKLFFESVCG 334
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +++ + F S CG+V R+ GD H R AFVEF A AALN
Sbjct: 309 RTIYCTNIDKKVSQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFIMAESAIAALNC 368
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTF 201
G +LG P+RV PSKT + P P
Sbjct: 369 SGVVLGSLPIRVSPSKTPVRPRAPRL 394
>gi|8671859|gb|AAF78422.1|AC018748_1 Contains similarity to RNA-binding protein from Arabidopsis
thaliana gi|2129727 and contains RNA recognition
PF|00076 domain. ESTs gb|H37317, gb|F14415, gb|AA651290
come from this gene [Arabidopsis thaliana]
Length = 829
Score = 273 bits (697), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 134/199 (67%), Positives = 158/199 (79%), Gaps = 5/199 (2%)
Query: 42 MFTKLNPLAKEFFPSYY-HQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRK 100
MF KLNP AKEFFPSY + + F + +DNK+ AI+ N + R
Sbjct: 1 MFKKLNPEAKEFFPSYKRNTNQSDDFVIAIKPSGEDNKKVAINRRRRNNYNQGR----RV 56
Query: 101 RLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
RL GRA +AQREDS+RRTVYVSDIDQ++TEE LAGLFSSCGQVVDCR+CGDP+SVLRFAF
Sbjct: 57 RLPGRASKAQREDSIRRTVYVSDIDQSVTEEGLAGLFSSCGQVVDCRICGDPNSVLRFAF 116
Query: 161 VEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTN 220
VEF+D+ GAR+AL+LGGTM+GYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT+YCTN
Sbjct: 117 VEFSDDQGARSALSLGGTMIGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTIYCTN 176
Query: 221 IDKKVPQAEVKQFFEAACG 239
+DK + +V FF++ACG
Sbjct: 177 VDKNATEDDVNTFFQSACG 195
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLF-SSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y +++D+N TE+ + F S+CG+V R+ GD R AFVEFA A AALN
Sbjct: 170 RTIYCTNVDKNATEDDVNTFFQSACGEVTRLRLLGDQVHSTRIAFVEFAMAESAVAALNC 229
Query: 176 GGTMLGYYPVRV 187
G +LG P+ V
Sbjct: 230 SGIVLGSQPISV 241
>gi|115435208|ref|NP_001042362.1| Os01g0209400 [Oryza sativa Japonica Group]
gi|56201519|dbj|BAD73038.1| RNA-binding protein -like [Oryza sativa Japonica Group]
gi|56201749|dbj|BAD73106.1| RNA-binding protein -like [Oryza sativa Japonica Group]
gi|113531893|dbj|BAF04276.1| Os01g0209400 [Oryza sativa Japonica Group]
gi|215737283|dbj|BAG96212.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 308
Score = 272 bits (696), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 134/214 (62%), Positives = 158/214 (73%), Gaps = 10/214 (4%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINN----------NFADDNKQSAIDNF 85
VQKLVD+ +KLNP AKEF PS + ++ + + K+S D +
Sbjct: 32 VQKLVDLLSKLNPAAKEFVPSSAAVSSPSRKALSADAPVFDYNSIGGWNGGGKESGADAY 91
Query: 86 NNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVD 145
RRR +QGR+R++ RA A REDS+RRTVYVSDID +TEERLA +F++CGQVVD
Sbjct: 92 QQRRRRNGYLSQGRRRMNERARHADREDSIRRTVYVSDIDHTVTEERLADIFANCGQVVD 151
Query: 146 CRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRS 205
CR+CGDPHSVLRFAF+EFADE GAR ALNLGGTMLG+YPVRVLPSKTAILPVNP FLPR+
Sbjct: 152 CRICGDPHSVLRFAFIEFADEEGARTALNLGGTMLGFYPVRVLPSKTAILPVNPKFLPRT 211
Query: 206 EDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
EDE+EM RTVYCTNIDKKV Q +VK FFE CG
Sbjct: 212 EDEKEMVIRTVYCTNIDKKVTQLDVKNFFEELCG 245
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGAR 170
++ V RTVY ++ID+ +T+ + F CG+V R+ GD R AFVEF A
Sbjct: 215 KEMVIRTVYCTNIDKKVTQLDVKNFFEELCGEVSRLRLLGDNVHSTRIAFVEFVHAECAI 274
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILP 196
ALN G +LG PVRV PSKT + P
Sbjct: 275 MALNCSGMILGTLPVRVSPSKTPVKP 300
>gi|225455232|ref|XP_002272223.1| PREDICTED: uncharacterized protein LOC100245327 [Vitis vinifera]
gi|302143972|emb|CBI23077.3| unnamed protein product [Vitis vinifera]
Length = 361
Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 136/208 (65%), Positives = 161/208 (77%), Gaps = 7/208 (3%)
Query: 36 VQKLVDMFTKLNPLAKEFFP-SYYHQH---TDHHFSVINNNFADDNKQSAIDNFNNNRRR 91
++ L D+ +KLNP+A+EF P S + H F NN N +A N N RR+
Sbjct: 94 IRDLEDLLSKLNPMAEEFVPPSLANGHGWSAGAAFGYTNNFVLQANFGNA--NGNAGRRK 151
Query: 92 RNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD 151
RNN+NQ ++R++ R AQRE+ ++RTVYVSDIDQ +TEE LA LF +CGQVVDCR+CGD
Sbjct: 152 RNNYNQ-KRRINSRTSMAQREEVIKRTVYVSDIDQQVTEEDLAALFINCGQVVDCRICGD 210
Query: 152 PHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREM 211
P+SVLRFAFVEF DE GARAAL+L GTMLGYYPVRVLPSKTAI PVNPTFLPRSEDEREM
Sbjct: 211 PNSVLRFAFVEFTDEEGARAALSLAGTMLGYYPVRVLPSKTAIAPVNPTFLPRSEDEREM 270
Query: 212 CSRTVYCTNIDKKVPQAEVKQFFEAACG 239
C+RT+YCTNIDKKV QAEVK FFE+ CG
Sbjct: 271 CARTIYCTNIDKKVTQAEVKLFFESICG 298
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +T+ + F S CG+V R+ GD H R AFVEF A AALN
Sbjct: 273 RTIYCTNIDKKVTQAEVKLFFESICGEVHRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 332
Query: 176 GGTMLGYYPVRVLPSKTAILPVNP 199
G +LG P+RV PSKT + P P
Sbjct: 333 SGAILGSLPIRVSPSKTPVRPRAP 356
>gi|297853152|ref|XP_002894457.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297340299|gb|EFH70716.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 769
Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 138/201 (68%), Positives = 161/201 (80%), Gaps = 6/201 (2%)
Query: 42 MFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNN---RRRRNNFNQG 98
MF KLNP AKEFFPSY ++T+ S +++F K S DN + RRR N
Sbjct: 1 MFKKLNPEAKEFFPSY-KKNTNQSLS--SDDFVIAKKPSGEDNKKDGINRRRRNNYNQGR 57
Query: 99 RKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRF 158
R RL GRA +AQRE S+RRTVYVSDIDQ++TEE LAGLFSSCGQVVDCR+CGDP+SVLRF
Sbjct: 58 RVRLPGRASKAQREVSIRRTVYVSDIDQSVTEEVLAGLFSSCGQVVDCRICGDPNSVLRF 117
Query: 159 AFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYC 218
AFVEF+D+ GARAAL+LGGTM+GYYPVRVLPSKTAILPVNPTFLPRSEDEREMC+RT+YC
Sbjct: 118 AFVEFSDDQGARAALSLGGTMIGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCTRTIYC 177
Query: 219 TNIDKKVPQAEVKQFFEAACG 239
TN+DK + VK FF++ACG
Sbjct: 178 TNVDKNATEDVVKTFFQSACG 198
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLF-SSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y +++D+N TE+ + F S+CG+V R+ GD R AFVEFA A AALN
Sbjct: 173 RTIYCTNVDKNATEDVVKTFFQSACGEVTRLRLLGDQVHSTRIAFVEFAMAESAVAALNC 232
Query: 176 GGTMLGYYPVRVLPSKTAI 194
G +LG P+R+ ++A+
Sbjct: 233 SGIVLGSQPIRLSQMRSAL 251
>gi|224118386|ref|XP_002317806.1| predicted protein [Populus trichocarpa]
gi|222858479|gb|EEE96026.1| predicted protein [Populus trichocarpa]
Length = 293
Score = 269 bits (688), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 130/213 (61%), Positives = 162/213 (76%), Gaps = 2/213 (0%)
Query: 29 KSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQ--SAIDNFN 86
KS + LV+M +KLNP+A+EF P H + N + Q + I N
Sbjct: 18 KSNGVNDMNDLVEMLSKLNPMAEEFVPPSLANHPGFFGNGFGFNANNFLVQINNGIANGQ 77
Query: 87 NNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDC 146
NRR++N++NQGR+R++ R AQR++ ++RTVYVSDIDQ +TEE+LAGLF CGQVVDC
Sbjct: 78 TNRRKKNSYNQGRRRMNNRTSMAQRDEIIKRTVYVSDIDQQVTEEQLAGLFIHCGQVVDC 137
Query: 147 RVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSE 206
R+CGDP+SVLRFAFVEF DE GAR AL+L GT+LG+YP+RVLPSKTAI PVNPTFLPRSE
Sbjct: 138 RICGDPNSVLRFAFVEFTDEEGARTALSLSGTVLGFYPLRVLPSKTAIAPVNPTFLPRSE 197
Query: 207 DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
DEREMC+RTVYCTNIDKK+ QA+V+ FFE+ CG
Sbjct: 198 DEREMCARTVYCTNIDKKITQADVRLFFESFCG 230
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RTVY ++ID+ IT+ + F S CG+V R+ GD H R AFVEFA A AALN
Sbjct: 205 RTVYCTNIDKKITQADVRLFFESFCGEVHRLRLLGDYHHSTRIAFVEFAVAESAIAALNC 264
Query: 176 GGTMLGYYPVRVLPSKT 192
G +LG P+RV PSKT
Sbjct: 265 SGAVLGSLPIRVSPSKT 281
>gi|356509167|ref|XP_003523323.1| PREDICTED: uncharacterized protein LOC100787572 [Glycine max]
Length = 369
Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 131/215 (60%), Positives = 164/215 (76%), Gaps = 17/215 (7%)
Query: 36 VQKLVDMFTKLNPLAKEFFP-SYYHQHT-----DHHFSVINN-----NFADDNKQSAIDN 84
++ L ++ +KLNP+A+EF P S + H + F NN N+ + N Q+
Sbjct: 98 MRDLEELLSKLNPMAEEFVPPSLANTHGFLAGPNAGFGYTNNIILPTNYGNTNGQT---- 153
Query: 85 FNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVV 144
NNRRR+N +N G++R++ + +RE+ +RRTVYVSDIDQ +TEE+LA LF +CGQVV
Sbjct: 154 --NNRRRKNGYNPGKRRMNNKMDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVV 211
Query: 145 DCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPR 204
DCRVCGDP+S+LRFAFVEF DE GARAAL+L GTMLGYYP+RVLPSKTAI PVNPTFLPR
Sbjct: 212 DCRVCGDPNSILRFAFVEFTDEEGARAALSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPR 271
Query: 205 SEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
SEDEREMCSRT+YCTNIDKK+ QA+VK FFE+ CG
Sbjct: 272 SEDEREMCSRTIYCTNIDKKLTQADVKHFFESICG 306
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +T+ + F S CG+V R+ GD H R AFVEFA A AAL+
Sbjct: 281 RTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYHHSTRIAFVEFALAESAIAALSC 340
Query: 176 GGTMLGYYPVRVLPSKT 192
G +LG P+RV PSKT
Sbjct: 341 SGVILGSLPIRVSPSKT 357
>gi|356516140|ref|XP_003526754.1| PREDICTED: uncharacterized protein LOC100799585 [Glycine max]
Length = 378
Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 140/250 (56%), Positives = 178/250 (71%), Gaps = 26/250 (10%)
Query: 14 ANNTNNNK--NNNLETKKSESEF---TVQKLVDMFTKLNPLAKEFFP-SYYHQHTDHHFS 67
AN NN+ N + + ++E E ++ L ++ +KLNP+A+EF P S + H
Sbjct: 79 ANGVNNDGYGMNGVMSGENEGESFKRDMRDLEELLSKLNPMAEEFVPPSLSNTHGYLAGP 138
Query: 68 ------------VINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSV 115
++ NNF + N Q+ NRRR+N +NQG++R++ + +RE+
Sbjct: 139 GAGAGFGYPNNFILLNNFGNANGQT-------NRRRKNGYNQGKRRVNHKMDMEKREEMT 191
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RRTVYVSDIDQ +TEE+LA LF +CGQVVDCRVCGDP+S+LRFAF+EF DE GARAALNL
Sbjct: 192 RRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEEGARAALNL 251
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
GTMLGYYP+RVLPSKTAI PVNPTFLPRSEDEREMCSRT+YCTNIDKK+ QA+VK FFE
Sbjct: 252 SGTMLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFE 311
Query: 236 AACGGEVRTL 245
+ C GEV+ L
Sbjct: 312 SIC-GEVQRL 320
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +T+ + F S CG+V R+ GD H R AFVEF A AAL+
Sbjct: 290 RTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFTVAESAIAALSC 349
Query: 176 GGTMLGYYPVRVLPSKTAI 194
G +LG P+RV PSKT +
Sbjct: 350 SGVILGSLPIRVSPSKTPV 368
>gi|218187722|gb|EEC70149.1| hypothetical protein OsI_00850 [Oryza sativa Indica Group]
Length = 317
Score = 266 bits (680), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 135/223 (60%), Positives = 159/223 (71%), Gaps = 19/223 (8%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINN----------NFADDNKQSAIDNF 85
VQKLVD+ +KLNP AKEF PS + ++ + + K+S D +
Sbjct: 32 VQKLVDLLSKLNPAAKEFVPSSAAVSSPSRKALSADAPVFDYNSIGGWNGGGKESGADAY 91
Query: 86 NNNR---------RRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGL 136
R RR +QGR+R++ RA A REDS+RRTVYVSDID +TEERLA +
Sbjct: 92 QQRRDLTDDDQLLRRNGYLSQGRRRMNERARHADREDSIRRTVYVSDIDHTVTEERLADI 151
Query: 137 FSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILP 196
F++CGQVVDCR+CGDPHSVLRFAF+EFADE GARAALNLGGTMLG+YPVRVLPSKTAILP
Sbjct: 152 FANCGQVVDCRICGDPHSVLRFAFIEFADEEGARAALNLGGTMLGFYPVRVLPSKTAILP 211
Query: 197 VNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
VNP FLPR+EDE+EM RTVYCTNIDKKV Q +VK FFE CG
Sbjct: 212 VNPKFLPRTEDEKEMVIRTVYCTNIDKKVTQLDVKNFFEELCG 254
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGAR 170
++ V RTVY ++ID+ +T+ + F CG+V R+ GD R AFVEF A
Sbjct: 224 KEMVIRTVYCTNIDKKVTQLDVKNFFEELCGEVSRLRLLGDNVHSTRIAFVEFVHAECAI 283
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILP 196
ALN G +LG PVRV PSKT + P
Sbjct: 284 MALNCSGMILGTLPVRVSPSKTPVKP 309
>gi|356516142|ref|XP_003526755.1| PREDICTED: uncharacterized protein LOC100800126 [Glycine max]
Length = 369
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 129/215 (60%), Positives = 164/215 (76%), Gaps = 17/215 (7%)
Query: 36 VQKLVDMFTKLNPLAKEFFP-SYYHQHT-----DHHFSVINN-----NFADDNKQSAIDN 84
++ L ++ +KLNP+A+EF P S + H + F NN N+ + N Q+
Sbjct: 98 MRDLEELLSKLNPMAEEFVPPSLANTHGLLAGPNAGFGYTNNFILPNNYGNTNGQT---- 153
Query: 85 FNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVV 144
NNRRR+N +N G++R++ + +RE+ +RRTVYVSDIDQ +TEE+LA LF +CGQVV
Sbjct: 154 --NNRRRKNGYNPGKRRMNHKMDMEKREEMIRRTVYVSDIDQLVTEEQLAALFLNCGQVV 211
Query: 145 DCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPR 204
DCRVCGDP+S+LRFAF+EF D+ GARAAL+L GTMLGYYP+RVLPSKTAI PVNPTFLPR
Sbjct: 212 DCRVCGDPNSILRFAFIEFTDDEGARAALSLSGTMLGYYPLRVLPSKTAIAPVNPTFLPR 271
Query: 205 SEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
SEDEREMCSRT+YCTNIDKK+ QA+VK FFE+ CG
Sbjct: 272 SEDEREMCSRTIYCTNIDKKLTQADVKHFFESICG 306
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +T+ + F S CG+V R+ GD H R AFVEFA A AAL+
Sbjct: 281 RTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYHHSTRIAFVEFALAESAIAALSC 340
Query: 176 GGTMLGYYPVRVLPSKT 192
G +LG P+RV PSKT
Sbjct: 341 SGVILGSLPIRVSPSKT 357
>gi|222617961|gb|EEE54093.1| hypothetical protein OsJ_00835 [Oryza sativa Japonica Group]
Length = 317
Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 134/223 (60%), Positives = 158/223 (70%), Gaps = 19/223 (8%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINN----------NFADDNKQSAIDNF 85
VQKLVD+ +KLNP AKEF PS + ++ + + K+S D +
Sbjct: 32 VQKLVDLLSKLNPAAKEFVPSSAAVSSPSRKALSADAPVFDYNSIGGWNGGGKESGADAY 91
Query: 86 NNNR---------RRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGL 136
R RR +QGR+R++ RA A REDS+RRTVYVSDID +TEERLA +
Sbjct: 92 QQRRDLTDDDQLLRRNGYLSQGRRRMNERARHADREDSIRRTVYVSDIDHTVTEERLADI 151
Query: 137 FSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILP 196
F++CGQVVDCR+CGDPHSVLRFAF+EFADE GAR ALNLGGTMLG+YPVRVLPSKTAILP
Sbjct: 152 FANCGQVVDCRICGDPHSVLRFAFIEFADEEGARTALNLGGTMLGFYPVRVLPSKTAILP 211
Query: 197 VNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
VNP FLPR+EDE+EM RTVYCTNIDKKV Q +VK FFE CG
Sbjct: 212 VNPKFLPRTEDEKEMVIRTVYCTNIDKKVTQLDVKNFFEELCG 254
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGAR 170
++ V RTVY ++ID+ +T+ + F CG+V R+ GD R AFVEF A
Sbjct: 224 KEMVIRTVYCTNIDKKVTQLDVKNFFEELCGEVSRLRLLGDNVHSTRIAFVEFVHAECAI 283
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILP 196
ALN G +LG PVRV PSKT + P
Sbjct: 284 MALNCSGMILGTLPVRVSPSKTPVKP 309
>gi|242051635|ref|XP_002454963.1| hypothetical protein SORBIDRAFT_03g002180 [Sorghum bicolor]
gi|241926938|gb|EES00083.1| hypothetical protein SORBIDRAFT_03g002180 [Sorghum bicolor]
Length = 298
Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 143/249 (57%), Positives = 168/249 (67%), Gaps = 24/249 (9%)
Query: 1 MAAVADMPGDAAAANNTNNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQ 60
MAAVA+ AAA K+ E + VQKLVD+ +KLNP AKEF PS
Sbjct: 1 MAAVAEGSASAAA--------------KEVEYQAGVQKLVDLLSKLNPAAKEFVPSAAAS 46
Query: 61 HTDHHFSVINNNF---ADDNKQSAID-----NFNNNRRRRNN--FNQGRKRLSGRAFRAQ 110
S F + A D F N RRR N NQGR+R + R RA+
Sbjct: 47 PPKKALSADAPVFDYRSIGGGNGATDAAFYVGFGNQHRRRGNGYINQGRRRTNDRVRRAE 106
Query: 111 REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGAR 170
REDS+RRTVYVS++D +TEERLA +F++CGQVVDCR+CGDPHSVLRFAF+EF+DE GAR
Sbjct: 107 REDSIRRTVYVSELDHTVTEERLADIFATCGQVVDCRICGDPHSVLRFAFIEFSDEEGAR 166
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEV 230
ALNLGGT+ G+YPVRVLPSKTAILPVNP FLPR+EDE+EM RTVYCTNIDK V Q +V
Sbjct: 167 TALNLGGTIFGFYPVRVLPSKTAILPVNPKFLPRTEDEKEMVMRTVYCTNIDKMVTQLDV 226
Query: 231 KQFFEAACG 239
K+FFE CG
Sbjct: 227 KKFFEELCG 235
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGAR 170
++ V RTVY ++ID+ +T+ + F CG+V R+ GD R AFVEF GA
Sbjct: 205 KEMVMRTVYCTNIDKMVTQLDVKKFFEELCGEVSRLRLLGDNVHSTRIAFVEFVHAEGAI 264
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILP 196
ALN G +LG PVRV PSKT + P
Sbjct: 265 MALNCSGMILGTLPVRVSPSKTPVKP 290
>gi|255646437|gb|ACU23697.1| unknown [Glycine max]
Length = 291
Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 135/226 (59%), Positives = 169/226 (74%), Gaps = 25/226 (11%)
Query: 36 VQKLVDMFTKLNPLAKEFFP-SYYHQH---------------TDHHFSVINNNFADDNKQ 79
++ L ++ +KLNP+A+EF P S + H ++F ++ NNF D N Q
Sbjct: 17 MRDLEELLSKLNPMAEEFVPPSLTNTHGYLPGPGAGAGAGFGYPNNF-ILLNNFGDANGQ 75
Query: 80 SAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSS 139
+ NRRR+N +N G++R++ + +RE+ +RRTVYVSDIDQ +TEE+LAGLF +
Sbjct: 76 T-------NRRRKNGYNHGKRRVNHKMDMEKREEMIRRTVYVSDIDQLVTEEQLAGLFLN 128
Query: 140 CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNP 199
CGQVVD RVCGDP+S+LRFAFVEF DE GARAALNL GTMLGYYP+RVLPSKTAI PVNP
Sbjct: 129 CGQVVDYRVCGDPNSILRFAFVEFTDEDGARAALNLSGTMLGYYPLRVLPSKTAIAPVNP 188
Query: 200 TFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTL 245
TFLPRSEDEREMCSRT+YCTNIDKK+ QA+VK FFE+ C GEV+ L
Sbjct: 189 TFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESIC-GEVQRL 233
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +T+ + F S CG+V R+ GD H R AFVEF A AAL+
Sbjct: 203 RTIYCTNIDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFTVAESAIAALSC 262
Query: 176 GGTMLGYYPVRVLPSKTAI 194
G +LG P+RV PSKT +
Sbjct: 263 SGVILGSLPIRVSPSKTPV 281
>gi|255555781|ref|XP_002518926.1| RNA-binding protein, putative [Ricinus communis]
gi|223541913|gb|EEF43459.1| RNA-binding protein, putative [Ricinus communis]
Length = 379
Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 132/223 (59%), Positives = 161/223 (72%), Gaps = 22/223 (9%)
Query: 36 VQKLVDMFTKLNPLAKEFFP----------SYYHQHTDHHFSVINNNFADDNKQSAIDNF 85
+++L ++F+KLNP+A+EF P +Y H + NN +N A
Sbjct: 97 IRELQELFSKLNPMAEEFVPPSLANNKISNNYIHGLNGLNVGFYTNN---NNYDPAFMLT 153
Query: 86 NNNR---------RRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGL 136
N +R RR+ N+NQG++RL+ R AQRE+ +RRTVYVSDIDQ +TEE+LA L
Sbjct: 154 NASRNGQLNGSAARRKKNYNQGKRRLNSRTSMAQREEIIRRTVYVSDIDQQVTEEQLAAL 213
Query: 137 FSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILP 196
F CGQVVDCR+CGDP+SVLRFAF+EF E GARAALNL GT+LGYYPVRVLPSKTAI P
Sbjct: 214 FVGCGQVVDCRICGDPNSVLRFAFIEFTHEEGARAALNLAGTVLGYYPVRVLPSKTAIAP 273
Query: 197 VNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
VNPTFLPRS+DEREMC RT+YCTNIDKKV QA+VK FFE+ CG
Sbjct: 274 VNPTFLPRSDDEREMCIRTIYCTNIDKKVTQADVKLFFESVCG 316
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +T+ + F S CG+V R+ GD H R AFVEF A AALN
Sbjct: 291 RTIYCTNIDKKVTQADVKLFFESVCGEVYRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 350
Query: 176 GGTMLGYYPVRVLPSKTAILPVNP 199
G +LG P+RV PSKT + P P
Sbjct: 351 SGVVLGSLPIRVSPSKTPVRPRAP 374
>gi|449438861|ref|XP_004137206.1| PREDICTED: uncharacterized protein LOC101204595 [Cucumis sativus]
Length = 403
Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 124/213 (58%), Positives = 164/213 (76%), Gaps = 4/213 (1%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADD---NKQSAIDNFNNNRRRR 92
++ L ++ +KLNP+A+EF P ++ +F+ + +D S + NN+RR++
Sbjct: 134 MRDLEELLSKLNPMAEEFVPPSLAKNFSGYFTGAGLGYTNDFLLQPNSVNNEGNNSRRKK 193
Query: 93 NNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP 152
N F+QGR+R++ + +R++ RRTVYVSDIDQ +TEE LA +F+SCG+VVDCR+CGDP
Sbjct: 194 NGFSQGRRRMNNKMNAVKRDEMTRRTVYVSDIDQQVTEELLATVFASCGEVVDCRICGDP 253
Query: 153 HSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+S+L FAF+EF DE GARA+LNL GT+LG+YPVRVLPSKTAI PVNP FLPRS+DEREMC
Sbjct: 254 NSILHFAFIEFTDEEGARASLNLSGTVLGFYPVRVLPSKTAIAPVNPDFLPRSDDEREMC 313
Query: 213 SRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTL 245
SRT+YCTNIDKKV QAEVK FFE+ C GEV+ L
Sbjct: 314 SRTIYCTNIDKKVTQAEVKLFFESLC-GEVQRL 345
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +T+ + F S CG+V R+ GD H R AFVEF A AALN
Sbjct: 315 RTIYCTNIDKKVTQAEVKLFFESLCGEVQRLRLLGDYHHSTRIAFVEFTMAESAIAALNC 374
Query: 176 GGTMLGYYPVRVLPSKTAILPVNP 199
G +LG P+RV PSKT + P +P
Sbjct: 375 SGVVLGSLPIRVSPSKTPVRPRSP 398
>gi|79319100|ref|NP_001031131.1| CTC-interacting domain 11 protein [Arabidopsis thaliana]
gi|332193409|gb|AEE31530.1| CTC-interacting domain 11 protein [Arabidopsis thaliana]
Length = 406
Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 125/214 (58%), Positives = 160/214 (74%), Gaps = 11/214 (5%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVI----------NNNFADDNKQSAIDNF 85
+++L ++F+KLNP+A+EF P ++ + + NN FA +
Sbjct: 83 MRELQELFSKLNPMAEEFVPPSLNKQGGNGVNGGFFTSAGSFFRNNGFAGTGNGGYGNEN 142
Query: 86 NNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVD 145
RR+++ F QG++R++ R AQRED +RRTVYVSD+DQ +TEE+LAGLF SCGQVVD
Sbjct: 143 GGFRRKKS-FGQGKRRMNARTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQVVD 201
Query: 146 CRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRS 205
CR+CGDP+SVLRFAF+EF DE GA ALNL GTMLG+YPV+VLPSKTAI PVNPTFLPR+
Sbjct: 202 CRICGDPNSVLRFAFIEFTDEEGAMTALNLSGTMLGFYPVKVLPSKTAIAPVNPTFLPRT 261
Query: 206 EDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
EDEREMC+RT+YCTNIDKKV Q++VK FFE+ CG
Sbjct: 262 EDEREMCARTIYCTNIDKKVTQSDVKIFFESFCG 295
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +T+ + F S CG+V R+ GD R AFVEF A AALN
Sbjct: 270 RTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTRIAFVEFVMAESAIAALNC 329
Query: 176 GGTMLGYYPVR 186
G +LG P+R
Sbjct: 330 SGVVLGSLPIR 340
>gi|302769672|ref|XP_002968255.1| hypothetical protein SELMODRAFT_66365 [Selaginella moellendorffii]
gi|300163899|gb|EFJ30509.1| hypothetical protein SELMODRAFT_66365 [Selaginella moellendorffii]
Length = 260
Score = 263 bits (672), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 127/206 (61%), Positives = 157/206 (76%), Gaps = 5/206 (2%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFS--VINNNFADDNKQSAIDNFNNNRRRRN 93
+++L D+ KLNPLAKEF P D S +++ +Q +R++N
Sbjct: 1 MRELEDLLKKLNPLAKEFVPP---SRGDPALSKELLSKQINHQQQQLQQQQPLQQQRKQN 57
Query: 94 NFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH 153
+N G+KR + R +AQRE+ +RRTVYVSDIDQ +TEE+LA LF +CGQV+DCRVCGDP+
Sbjct: 58 GYNTGKKRYNNRQSKAQREECIRRTVYVSDIDQQVTEEQLAALFINCGQVIDCRVCGDPN 117
Query: 154 SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
SVLRFAFVEF DE GAR ALNL GTMLG+YPVRVLPSKTAI+PVNPTFLPRSEDER+MC+
Sbjct: 118 SVLRFAFVEFTDEEGARQALNLAGTMLGFYPVRVLPSKTAIVPVNPTFLPRSEDERQMCA 177
Query: 214 RTVYCTNIDKKVPQAEVKQFFEAACG 239
RT+YCTNIDKKV Q++VK FFE+ CG
Sbjct: 178 RTIYCTNIDKKVSQSDVKLFFESLCG 203
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +++ + F S CG+V R+ GD H R AFVEFA A AALN
Sbjct: 178 RTIYCTNIDKKVSQSDVKLFFESLCGEVSRLRLLGDYHHSTRIAFVEFALAESAMAALNC 237
Query: 176 GGTMLGYYPVRVLPSKTAILP 196
G +LG P+RV PSKT + P
Sbjct: 238 SGAILGSLPIRVSPSKTPVRP 258
>gi|449483221|ref|XP_004156526.1| PREDICTED: poly(U)-binding-splicing factor half pint-like [Cucumis
sativus]
Length = 316
Score = 263 bits (671), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 124/213 (58%), Positives = 164/213 (76%), Gaps = 4/213 (1%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADD---NKQSAIDNFNNNRRRR 92
++ L ++ +KLNP+A+EF P ++ +F+ + +D S + NN+RR++
Sbjct: 47 MRDLEELLSKLNPMAEEFVPPSLAKNFSGYFTGAGLGYTNDFLLQPNSVNNEGNNSRRKK 106
Query: 93 NNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP 152
N F+QGR+R++ + +R++ RRTVYVSDIDQ +TEE LA +F+SCG+VVDCR+CGDP
Sbjct: 107 NGFSQGRRRMNNKMNAVKRDEMTRRTVYVSDIDQQVTEELLATVFASCGEVVDCRICGDP 166
Query: 153 HSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+S+L FAF+EF DE GARA+LNL GT+LG+YPVRVLPSKTAI PVNP FLPRS+DEREMC
Sbjct: 167 NSILHFAFIEFTDEEGARASLNLSGTVLGFYPVRVLPSKTAIAPVNPDFLPRSDDEREMC 226
Query: 213 SRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTL 245
SRT+YCTNIDKKV QAEVK FFE+ C GEV+ L
Sbjct: 227 SRTIYCTNIDKKVTQAEVKLFFESLC-GEVQRL 258
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +T+ + F S CG+V R+ GD H R AFVEF A AALN
Sbjct: 228 RTIYCTNIDKKVTQAEVKLFFESLCGEVQRLRLLGDYHHSTRIAFVEFTMAESAIAALNC 287
Query: 176 GGTMLGYYPVRVLPSKTAILPVNP 199
G +LG P+RV PSKT + P +P
Sbjct: 288 SGVVLGSLPIRVSPSKTPVRPRSP 311
>gi|15223304|ref|NP_174556.1| CTC-interacting domain 11 protein [Arabidopsis thaliana]
gi|6714278|gb|AAF25974.1|AC017118_11 F6N18.17 [Arabidopsis thaliana]
gi|332193408|gb|AEE31529.1| CTC-interacting domain 11 protein [Arabidopsis thaliana]
Length = 358
Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 125/214 (58%), Positives = 160/214 (74%), Gaps = 11/214 (5%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVI----------NNNFADDNKQSAIDNF 85
+++L ++F+KLNP+A+EF P ++ + + NN FA +
Sbjct: 83 MRELQELFSKLNPMAEEFVPPSLNKQGGNGVNGGFFTSAGSFFRNNGFAGTGNGGYGNEN 142
Query: 86 NNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVD 145
RR+++ F QG++R++ R AQRED +RRTVYVSD+DQ +TEE+LAGLF SCGQVVD
Sbjct: 143 GGFRRKKS-FGQGKRRMNARTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQVVD 201
Query: 146 CRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRS 205
CR+CGDP+SVLRFAF+EF DE GA ALNL GTMLG+YPV+VLPSKTAI PVNPTFLPR+
Sbjct: 202 CRICGDPNSVLRFAFIEFTDEEGAMTALNLSGTMLGFYPVKVLPSKTAIAPVNPTFLPRT 261
Query: 206 EDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
EDEREMC+RT+YCTNIDKKV Q++VK FFE+ CG
Sbjct: 262 EDEREMCARTIYCTNIDKKVTQSDVKIFFESFCG 295
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +T+ + F S CG+V R+ GD R AFVEF A AALN
Sbjct: 270 RTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTRIAFVEFVMAESAIAALNC 329
Query: 176 GGTMLGYYPVRVLPSKTAILPVNP 199
G +LG P+RV PSKT + P +P
Sbjct: 330 SGVVLGSLPIRVSPSKTPVRPRSP 353
>gi|297851722|ref|XP_002893742.1| hypothetical protein ARALYDRAFT_473465 [Arabidopsis lyrata subsp.
lyrata]
gi|297339584|gb|EFH70001.1| hypothetical protein ARALYDRAFT_473465 [Arabidopsis lyrata subsp.
lyrata]
Length = 409
Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 130/221 (58%), Positives = 162/221 (73%), Gaps = 21/221 (9%)
Query: 36 VQKLVDMFTKLNPLAKEFFP-SYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNR----- 89
+++L ++F+KLNP+A+EF P S Q + + +N F SA F NN
Sbjct: 86 MRELQELFSKLNPMAEEFVPPSLTKQGGNGGLNGVNGGFF----TSAGSFFRNNGFSGTG 141
Query: 90 -----------RRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFS 138
RR+ +F QG++R++ R AQRED +RRTVYVSD+DQ +TEE+LAGLF
Sbjct: 142 NGGYGNENGGFRRKKSFGQGKRRMNARTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFV 201
Query: 139 SCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVN 198
SCGQVVDCR+CGDP+SVLRFAF+EF DE GA ALNL GTMLG+YPV+VLPSKTAI PVN
Sbjct: 202 SCGQVVDCRICGDPNSVLRFAFIEFTDEEGAMTALNLSGTMLGFYPVKVLPSKTAIAPVN 261
Query: 199 PTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
PTFLPR+EDEREMC+RT+YCTNIDKKV Q++VK FFE+ CG
Sbjct: 262 PTFLPRTEDEREMCARTIYCTNIDKKVTQSDVKIFFESFCG 302
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +T+ + F S CG+V R+ GD R AFVEF A AALN
Sbjct: 277 RTIYCTNIDKKVTQSDVKIFFESFCGEVYRLRLLGDYQHSTRIAFVEFVMAESAIAALNC 336
Query: 176 GGTMLGYYPVR 186
G +LG P+R
Sbjct: 337 SGVVLGSLPIR 347
>gi|302788706|ref|XP_002976122.1| hypothetical protein SELMODRAFT_56081 [Selaginella moellendorffii]
gi|300156398|gb|EFJ23027.1| hypothetical protein SELMODRAFT_56081 [Selaginella moellendorffii]
Length = 267
Score = 260 bits (664), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 127/211 (60%), Positives = 155/211 (73%), Gaps = 10/211 (4%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRR---- 91
+++L D+ KLNPLAKEF P D + F + F + R+
Sbjct: 1 MRELEDLLKKLNPLAKEFVPPSPTTQGDLEVLLETKAFF---VLATFSFFAGSDRKLGLF 57
Query: 92 ---RNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV 148
+N +N G+KR + R +AQRE+ +RRTVYVSDIDQ +TEE+LA LF +CGQV+DCRV
Sbjct: 58 LVQQNGYNTGKKRYNNRQSKAQREECIRRTVYVSDIDQQVTEEQLAALFINCGQVIDCRV 117
Query: 149 CGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDE 208
CGDP+SVLRFAFVEF DE GAR ALNL GTMLG+YPVRVLPSKTAI+PVNPTFLPRSEDE
Sbjct: 118 CGDPNSVLRFAFVEFTDEEGARQALNLAGTMLGFYPVRVLPSKTAIVPVNPTFLPRSEDE 177
Query: 209 REMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
R+MC+RT+YCTNIDKKV Q++VK FFE+ CG
Sbjct: 178 RQMCARTIYCTNIDKKVSQSDVKLFFESLCG 208
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +++ + F S CG+V R+ GD H R AFVEFA A AALN
Sbjct: 183 RTIYCTNIDKKVSQSDVKLFFESLCGEVSRLRLLGDYHHSTRIAFVEFALAESAMAALNC 242
Query: 176 GGTMLGYYPVRVLPSKTAILPVNP 199
G +LG P+RV PSKT + P +P
Sbjct: 243 SGAILGSLPIRVSPSKTPVRPRSP 266
>gi|357464159|ref|XP_003602361.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355491409|gb|AES72612.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 384
Score = 259 bits (663), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 131/224 (58%), Positives = 164/224 (73%), Gaps = 15/224 (6%)
Query: 36 VQKLVDMFTKLNPLAKEFFP----SYYHQHT----DHHFSVINNNFADDNKQSAIDNFNN 87
++ L ++ +KLNP+A+EF P + YH + + F NNNF N +
Sbjct: 104 MRDLEELLSKLNPMAEEFVPPSLVTNYHGYLAAGPNAGFGYPNNNFMLQNNFGNANANAT 163
Query: 88 ------NRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCG 141
NRRR+N +N ++R+ + +RE+ +RRTVYVSDIDQ +TEE+LA LF +CG
Sbjct: 164 ANNGQINRRRKNGYNNAKRRVYHKMDMEKREEMIRRTVYVSDIDQQVTEEQLAALFLNCG 223
Query: 142 QVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTF 201
QVVDCRVCGDP+S+LRFAFVEF DE GARAALNL GTMLGYYP+RVLPSKTAI PVNPTF
Sbjct: 224 QVVDCRVCGDPNSILRFAFVEFTDEVGARAALNLSGTMLGYYPLRVLPSKTAIAPVNPTF 283
Query: 202 LPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTL 245
LPRSEDEREMC+RT+YCTN+DKK+ QA+VK FFE+ C GEV+ L
Sbjct: 284 LPRSEDEREMCTRTIYCTNLDKKLTQADVKHFFESIC-GEVQRL 326
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y +++D+ +T+ + F S CG+V R+ GD H R AFVEFA A AAL+
Sbjct: 296 RTIYCTNLDKKLTQADVKHFFESICGEVQRLRLLGDYHHSTRIAFVEFAVAESAIAALSC 355
Query: 176 GGTMLGYYPVRVLPSKTAI 194
G +LG P+RV PSKT +
Sbjct: 356 SGVVLGSLPIRVSPSKTPV 374
>gi|297809287|ref|XP_002872527.1| RNA-binding protein 37 [Arabidopsis lyrata subsp. lyrata]
gi|297318364|gb|EFH48786.1| RNA-binding protein 37 [Arabidopsis lyrata subsp. lyrata]
Length = 336
Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 125/209 (59%), Positives = 161/209 (77%), Gaps = 7/209 (3%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNN-----RR 90
+++L ++ +KLNP+AKEF P + + F+ FA +N A NF N RR
Sbjct: 66 MRELHELLSKLNPMAKEFVPPSLTKPVVNGFN--GGFFAVNNGFGAAGNFPVNEDGGFRR 123
Query: 91 RRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCG 150
+++ QG++R++ R AQRE+ +RRTVYVSDIDQ +TEE+LAGLF GQVVDCR+CG
Sbjct: 124 KKSFGQQGKRRMNPRTSLAQREEIIRRTVYVSDIDQQVTEEQLAGLFIGFGQVVDCRICG 183
Query: 151 DPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDERE 210
DP+SVLRFAF+EF DE GARAAL+L GTMLG+YPV+V+PSKTAI PVNPTFLPR+EDERE
Sbjct: 184 DPNSVLRFAFIEFTDEVGARAALSLSGTMLGFYPVKVMPSKTAIAPVNPTFLPRTEDERE 243
Query: 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
MC+RT+YCTNIDKK+ QA++K FFE+ CG
Sbjct: 244 MCARTIYCTNIDKKLTQADIKLFFESVCG 272
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +T+ + F S CG+V R+ GD H R FVEF A AALN
Sbjct: 247 RTIYCTNIDKKLTQADIKLFFESVCGEVYRLRLLGDYHHPTRIGFVEFVMAESAIAALNC 306
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSE 206
G +LG P+RV PSKT PV +PR +
Sbjct: 307 SGVLLGSLPIRVSPSKT---PVRSRAVPRHQ 334
>gi|79325059|ref|NP_001031614.1| CTC-interacting domain 12 protein [Arabidopsis thaliana]
gi|332657508|gb|AEE82908.1| CTC-interacting domain 12 protein [Arabidopsis thaliana]
Length = 326
Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 124/209 (59%), Positives = 159/209 (76%), Gaps = 7/209 (3%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNN-----RR 90
+++L ++ +KLNP+AKEF P + + F+ FA +N A NF N RR
Sbjct: 66 MRELHELLSKLNPMAKEFIPPSLTKPVVNGFN--GGFFAVNNGFVAAGNFPVNEDGSFRR 123
Query: 91 RRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCG 150
+++ QG++R++ R AQRE+ +RRTVYVSDIDQ +TEE+LAGLF GQVVDCR+CG
Sbjct: 124 KKSFGQQGKRRMNPRTSLAQREEIIRRTVYVSDIDQQVTEEQLAGLFIGFGQVVDCRICG 183
Query: 151 DPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDERE 210
DP+SVLRFAF+EF DE GAR ALNL GTMLG+YPV+V+PSKTAI PVNPTFLPR+EDERE
Sbjct: 184 DPNSVLRFAFIEFTDEVGARTALNLSGTMLGFYPVKVMPSKTAIAPVNPTFLPRTEDERE 243
Query: 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
MC+RT+YCTNIDKK+ Q ++K FFE+ CG
Sbjct: 244 MCARTIYCTNIDKKLTQTDIKLFFESVCG 272
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +T+ + F S CG+V R+ GD H R FVEF A AALN
Sbjct: 247 RTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRLLGDYHHPTRIGFVEFVMAESAIAALNC 306
Query: 176 GGTMLGYYPVR 186
G +LG P+R
Sbjct: 307 SGVLLGSLPIR 317
>gi|15235177|ref|NP_192799.1| CTC-interacting domain 12 protein [Arabidopsis thaliana]
gi|4115925|gb|AAD03436.1| contains similarity to RNA recognition motifs (Pfam: PF00076,
Score=5.5e-23, N=2) [Arabidopsis thaliana]
gi|4539439|emb|CAB40027.1| RNA-binding protein [Arabidopsis thaliana]
gi|4959384|gb|AAD34325.1| RNA-binding protein [Arabidopsis thaliana]
gi|7267758|emb|CAB78184.1| RNA-binding protein [Arabidopsis thaliana]
gi|14517528|gb|AAK62654.1| AT4g10610/T4F9_70 [Arabidopsis thaliana]
gi|18700204|gb|AAL77712.1| AT4g10610/T4F9_70 [Arabidopsis thaliana]
gi|21592407|gb|AAM64358.1| RNA-binding protein [Arabidopsis thaliana]
gi|332657507|gb|AEE82907.1| CTC-interacting domain 12 protein [Arabidopsis thaliana]
Length = 336
Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 124/209 (59%), Positives = 159/209 (76%), Gaps = 7/209 (3%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNN-----RR 90
+++L ++ +KLNP+AKEF P + + F+ FA +N A NF N RR
Sbjct: 66 MRELHELLSKLNPMAKEFIPPSLTKPVVNGFN--GGFFAVNNGFVAAGNFPVNEDGSFRR 123
Query: 91 RRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCG 150
+++ QG++R++ R AQRE+ +RRTVYVSDIDQ +TEE+LAGLF GQVVDCR+CG
Sbjct: 124 KKSFGQQGKRRMNPRTSLAQREEIIRRTVYVSDIDQQVTEEQLAGLFIGFGQVVDCRICG 183
Query: 151 DPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDERE 210
DP+SVLRFAF+EF DE GAR ALNL GTMLG+YPV+V+PSKTAI PVNPTFLPR+EDERE
Sbjct: 184 DPNSVLRFAFIEFTDEVGARTALNLSGTMLGFYPVKVMPSKTAIAPVNPTFLPRTEDERE 243
Query: 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
MC+RT+YCTNIDKK+ Q ++K FFE+ CG
Sbjct: 244 MCARTIYCTNIDKKLTQTDIKLFFESVCG 272
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +T+ + F S CG+V R+ GD H R FVEF A AALN
Sbjct: 247 RTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRLLGDYHHPTRIGFVEFVMAESAIAALNC 306
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSE 206
G +LG P+RV PSKT PV +PR +
Sbjct: 307 SGVLLGSLPIRVSPSKT---PVRSRAIPRHQ 334
>gi|110737686|dbj|BAF00782.1| RNA-binding - like protein [Arabidopsis thaliana]
Length = 353
Score = 257 bits (656), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 127/225 (56%), Positives = 162/225 (72%), Gaps = 14/225 (6%)
Query: 18 NNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFS---VINNNFA 74
N ++NN E ++ L D F+KLNP+A+EF P + NNFA
Sbjct: 78 NGERDNNGE---------IKDLADAFSKLNPMAQEFVPPSLARSQSGVLRNGLGFTNNFA 128
Query: 75 DDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLA 134
K + D ++ RRR +F QG++R++ R AQ++D +RRTVYVSDIDQ +TEE LA
Sbjct: 129 APPKLA--DGNDHFPRRRRSFGQGKRRMNKRTSLAQKDDVIRRTVYVSDIDQQVTEENLA 186
Query: 135 GLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAI 194
G+F +CGQVVDCRVCGDP+SVLRFAF+EF +E GARAAL++ GT+LG+YP++VLPSKTAI
Sbjct: 187 GVFINCGQVVDCRVCGDPNSVLRFAFIEFTNEEGARAALSMSGTVLGFYPLKVLPSKTAI 246
Query: 195 LPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
PVNPTFLPRSEDEREMC RTVYCTNIDK++ Q ++K FFE CG
Sbjct: 247 APVNPTFLPRSEDEREMCVRTVYCTNIDKRITQIDLKGFFEMPCG 291
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 56/91 (61%), Gaps = 6/91 (6%)
Query: 117 RTVYVSDIDQNITEERLAGLFS-SCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RTVY ++ID+ IT+ L G F CG+V R+ GD H R AFVEFA A AAL+
Sbjct: 266 RTVYCTNIDKRITQIDLKGFFEMPCGEVHRLRL-GDYHHQTRIAFVEFAMAESAIAALHC 324
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSE 206
G +LG P+RV PSKT PV P F PR+E
Sbjct: 325 SGIVLGALPIRVSPSKT---PVRPHF-PRAE 351
>gi|15229132|ref|NP_190508.1| CTC-interacting domain 10 protein [Arabidopsis thaliana]
gi|79314662|ref|NP_001030833.1| CTC-interacting domain 10 protein [Arabidopsis thaliana]
gi|12324442|gb|AAG52182.1|AC012329_9 putative RNA-binding protein; 38450-35693 [Arabidopsis thaliana]
gi|6723409|emb|CAB66418.1| RNA-binding-like protein [Arabidopsis thaliana]
gi|222424104|dbj|BAH20012.1| AT3G49390 [Arabidopsis thaliana]
gi|332645014|gb|AEE78535.1| CTC-interacting domain 10 protein [Arabidopsis thaliana]
gi|332645015|gb|AEE78536.1| CTC-interacting domain 10 protein [Arabidopsis thaliana]
Length = 353
Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 127/225 (56%), Positives = 162/225 (72%), Gaps = 14/225 (6%)
Query: 18 NNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFS---VINNNFA 74
N ++NN E ++ L D F+KLNP+A+EF P + NNFA
Sbjct: 78 NGERDNNGE---------IKDLADAFSKLNPMAQEFVPPSLARSQSGVLRNGLGFTNNFA 128
Query: 75 DDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLA 134
K + D ++ RRR +F QG++R++ R AQ++D +RRTVYVSDIDQ +TEE LA
Sbjct: 129 APPKLA--DGNDHFPRRRRSFGQGKRRMNKRTSLAQKDDVIRRTVYVSDIDQQVTEENLA 186
Query: 135 GLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAI 194
G+F +CGQVVDCRVCGDP+SVLRFAF+EF +E GARAAL++ GT+LG+YP++VLPSKTAI
Sbjct: 187 GVFINCGQVVDCRVCGDPNSVLRFAFIEFTNEEGARAALSMSGTVLGFYPLKVLPSKTAI 246
Query: 195 LPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
PVNPTFLPRSEDEREMC RTVYCTNIDK++ Q ++K FFE CG
Sbjct: 247 APVNPTFLPRSEDEREMCVRTVYCTNIDKRITQIDLKGFFEMLCG 291
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/91 (50%), Positives = 56/91 (61%), Gaps = 6/91 (6%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RTVY ++ID+ IT+ L G F CG+V R+ GD H R AFVEFA A AAL+
Sbjct: 266 RTVYCTNIDKRITQIDLKGFFEMLCGEVHRLRL-GDYHHQTRIAFVEFAMAESAIAALHC 324
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSE 206
G +LG P+RV PSKT PV P F PR+E
Sbjct: 325 SGIVLGALPIRVSPSKT---PVRPHF-PRAE 351
>gi|297819578|ref|XP_002877672.1| hypothetical protein ARALYDRAFT_485298 [Arabidopsis lyrata subsp.
lyrata]
gi|297323510|gb|EFH53931.1| hypothetical protein ARALYDRAFT_485298 [Arabidopsis lyrata subsp.
lyrata]
Length = 351
Score = 256 bits (653), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 128/227 (56%), Positives = 163/227 (71%), Gaps = 14/227 (6%)
Query: 16 NTNNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFS---VINNN 72
N N ++NN E ++ L D F+KLNP+A+EF P + F NN
Sbjct: 74 NRNGERDNNGE---------IKDLADAFSKLNPMAQEFVPPSLARSQSGVFRNGLGFTNN 124
Query: 73 FADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEER 132
FA K + D ++ RR +F QG++R++ R AQ++D +RRTVYVSDIDQ +TEE
Sbjct: 125 FAAPPKLA--DGNDHFPTRRRSFGQGKRRINKRTSLAQKDDVIRRTVYVSDIDQQVTEEN 182
Query: 133 LAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192
LAG+F +CGQVVDCRVCGDP+SVLRFAF+EF +E GARAAL++ GT+LG+YP++VLPSKT
Sbjct: 183 LAGVFINCGQVVDCRVCGDPNSVLRFAFIEFTNEEGARAALSMSGTVLGFYPLKVLPSKT 242
Query: 193 AILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
AI PVNPTFLPRSEDEREMC RTVYCTNIDK++ Q ++K FFE CG
Sbjct: 243 AIAPVNPTFLPRSEDEREMCVRTVYCTNIDKRITQIDLKVFFEMLCG 289
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 55/91 (60%), Gaps = 6/91 (6%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RTVY ++ID+ IT+ L F CG+V R+ GD H R AFVEFA A AAL+
Sbjct: 264 RTVYCTNIDKRITQIDLKVFFEMLCGEVHRLRL-GDYHHQTRIAFVEFAMAESAIAALHC 322
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSE 206
G +LG P+RV PSKT PV P F PR++
Sbjct: 323 SGIVLGALPIRVSPSKT---PVRPHF-PRAD 349
>gi|168022364|ref|XP_001763710.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685203|gb|EDQ71600.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 119/154 (77%), Positives = 136/154 (88%), Gaps = 1/154 (0%)
Query: 91 RRNNFNQGR-KRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVC 149
++N +NQG +R++ R RAQREDS+RRTVYVSDIDQ +TEE+LA LF +CGQVVDCRVC
Sbjct: 1 KKNGYNQGNNRRVNSRTSRAQREDSIRRTVYVSDIDQQVTEEQLAALFITCGQVVDCRVC 60
Query: 150 GDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDER 209
GDP+SVLRFAFVEF DE GARAAL+L GTMLGYYPVRVLPSKTAI+PVNPTFLPRSEDER
Sbjct: 61 GDPNSVLRFAFVEFTDEEGARAALSLAGTMLGYYPVRVLPSKTAIVPVNPTFLPRSEDER 120
Query: 210 EMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVR 243
EMC+RT+YCTNIDKKV QA+VK FFE+ CG R
Sbjct: 121 EMCARTIYCTNIDKKVSQADVKLFFESLCGEVAR 154
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +++ + F S CG+V R+ GD H R AFVEF A AALN
Sbjct: 125 RTIYCTNIDKKVSQADVKLFFESLCGEVARLRLLGDYHHSTRIAFVEFVMAESAMAALNC 184
Query: 176 GGTMLGYYPVRVLPSKTAILPVNP 199
G +LG P+RV PSKT + P +P
Sbjct: 185 SGAILGSLPIRVSPSKTPVRPRSP 208
>gi|326502318|dbj|BAJ95222.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 317
Score = 254 bits (649), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 142/256 (55%), Positives = 171/256 (66%), Gaps = 19/256 (7%)
Query: 1 MAAVADMPGDAAAANNTNNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPS---- 56
MAAVA+ G AAA + K++E VQKLVD+ +KLNP AKEF PS
Sbjct: 1 MAAVAE--GSPAAAQAASAAAAAAAAAKEAEYHKDVQKLVDLLSKLNPAAKEFVPSSAAA 58
Query: 57 -------------YYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKRLS 103
YY + + + +Q NF +N RR N GR+R +
Sbjct: 59 TPRKGLSADAPVFYYGSIGGRNGGIGADAGYIGYQQRMRRNFVDNERRNGYINHGRRRTN 118
Query: 104 GRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEF 163
RA RA RE+S+RRTVYVS++D +TEERLA +F++CGQVVDCR+CGDP+SV+RFAF+EF
Sbjct: 119 ERARRADREESIRRTVYVSELDHTVTEERLAEIFANCGQVVDCRICGDPNSVMRFAFIEF 178
Query: 164 ADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDK 223
A E GARAALNLGGTMLG+YPVRVLPSKTAILPVNP FLP +EDE+EM RTVYCTNIDK
Sbjct: 179 AGEEGARAALNLGGTMLGFYPVRVLPSKTAILPVNPKFLPATEDEKEMVIRTVYCTNIDK 238
Query: 224 KVPQAEVKQFFEAACG 239
KV Q +VK FFE CG
Sbjct: 239 KVTQLDVKSFFEELCG 254
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGAR 170
++ V RTVY ++ID+ +T+ + F CG+V R+ GD R AFVEF + GA
Sbjct: 224 KEMVIRTVYCTNIDKKVTQLDVKSFFEELCGEVSRLRLLGDNVHSTRIAFVEFVNAEGAI 283
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILP 196
ALN G +LG PVRV PSKT + P
Sbjct: 284 QALNCSGMILGTLPVRVSPSKTPVKP 309
>gi|357464151|ref|XP_003602357.1| Splicing factor, arginine/serine-rich [Medicago truncatula]
gi|355491405|gb|AES72608.1| Splicing factor, arginine/serine-rich [Medicago truncatula]
Length = 384
Score = 253 bits (647), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 133/239 (55%), Positives = 168/239 (70%), Gaps = 25/239 (10%)
Query: 20 NKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFP-------SYYHQHTDHHFS----- 67
N N E+ K E ++ L ++ +KLNP+A+EF P Y F
Sbjct: 93 NGENGGESFKRE----MRDLEELLSKLNPMAEEFVPPSLTNNHGYLAAGPAAGFGYPNNF 148
Query: 68 VINNNFADDNKQSAIDNFNNNRRRRNNFN-QGRKRLSGRAFRAQREDSVRRTVYVSDIDQ 126
++ NN+A+ N Q+ NRRR+N + G++R + + +RE+ +RRTVYVSDIDQ
Sbjct: 149 ILLNNYANANGQT-------NRRRKNGYTTNGKRRANHKVDMEKREEMIRRTVYVSDIDQ 201
Query: 127 NITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVR 186
+TEE+LA LF +CGQVVDCRVCGDP+S+LRFAF+EF DE ARAA++L GTMLGYYP+R
Sbjct: 202 LVTEEQLASLFLNCGQVVDCRVCGDPNSILRFAFIEFTDEESARAAVSLSGTMLGYYPLR 261
Query: 187 VLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTL 245
VLPSKTAI PVNPTFLPRSEDEREMCSRT+YCTNIDKK+ QA+VK FFE+ C GEV L
Sbjct: 262 VLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESIC-GEVHRL 319
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 52/98 (53%), Gaps = 12/98 (12%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFA--------DEH 167
RT+Y ++ID+ +T+ + F S CG+V R+ GD R AFVEFA
Sbjct: 289 RTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYQHSTRIAFVEFAVIFFASFFQAE 348
Query: 168 GARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRS 205
A AAL+ G +LG P+RV PSKT PV PRS
Sbjct: 349 SAIAALSCSGVILGALPIRVSPSKT---PVRARSSPRS 383
>gi|1174153|gb|AAA86641.1| RNA-binding protein [Arabidopsis thaliana]
Length = 336
Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 123/209 (58%), Positives = 158/209 (75%), Gaps = 7/209 (3%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNN-----RR 90
+++L ++ +KLNP+AKEF P + + F+ FA +N A NF N RR
Sbjct: 66 MRELHELLSKLNPMAKEFIPPSLTKPVVNGFN--GGFFAVNNGFVAAGNFPVNEDGSFRR 123
Query: 91 RRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCG 150
+++ QG++R++ R AQRE+ +RRTVYVSDI Q +TEE+LAGLF GQVVDCR+CG
Sbjct: 124 KKSFGQQGKRRMNPRTSLAQREEIIRRTVYVSDIYQQVTEEQLAGLFIGFGQVVDCRICG 183
Query: 151 DPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDERE 210
DP+SVLRFAF+EF DE GAR ALNL GTMLG+YPV+V+PSKTAI PVNPTFLPR+EDERE
Sbjct: 184 DPNSVLRFAFIEFTDEVGARTALNLSGTMLGFYPVKVMPSKTAIAPVNPTFLPRTEDERE 243
Query: 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
MC+RT+YCTNIDKK+ Q ++K FFE+ CG
Sbjct: 244 MCARTIYCTNIDKKLTQTDIKLFFESVCG 272
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +T+ + F S CG+V R+ GD H R FVEF A ALN
Sbjct: 247 RTIYCTNIDKKLTQTDIKLFFESVCGEVYRLRLLGDYHHPTRIGFVEFVMAESAIGALNC 306
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSE 206
G +LG P+RV PSKT PV +PR +
Sbjct: 307 SGVLLGSLPIRVSPSKT---PVRSRAIPRHQ 334
>gi|226507984|ref|NP_001149092.1| LOC100282713 [Zea mays]
gi|195624680|gb|ACG34170.1| CID11 [Zea mays]
gi|414875767|tpg|DAA52898.1| TPA: CID11 [Zea mays]
Length = 299
Score = 253 bits (646), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 134/225 (59%), Positives = 161/225 (71%), Gaps = 16/225 (7%)
Query: 28 KKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHT-----------DHHFSVINNNFADD 76
K+ E + VQKLVD+ + LNP AKEF PS D+H S+ N A D
Sbjct: 15 KEVEYQAGVQKLVDLLSNLNPAAKEFVPSAAASPPKKALSADAPVFDYH-SIGGGNGATD 73
Query: 77 NKQSAIDNFNNNRRRRNN--FNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLA 134
+ F + R R N NQGR+R +GR RA REDS+RRTVYVS++D +TEERLA
Sbjct: 74 --AAFYVGFGHQPRTRGNGYINQGRRRTNGRVRRADREDSIRRTVYVSELDHTVTEERLA 131
Query: 135 GLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAI 194
+F++CGQVVDCR+CGDPHSVLRFAF+EF+DE GAR ALNLGGT+ G+YPVRVLPSKTAI
Sbjct: 132 DIFTTCGQVVDCRICGDPHSVLRFAFIEFSDEEGARTALNLGGTIFGFYPVRVLPSKTAI 191
Query: 195 LPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
LPVNP FLPR++DE+EM RTVYCTNIDK V Q +VK+FFE CG
Sbjct: 192 LPVNPKFLPRTDDEKEMVMRTVYCTNIDKMVTQLDVKKFFEELCG 236
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGAR 170
++ V RTVY ++ID+ +T+ + F CG+V R+ GD R AFVEF GA
Sbjct: 206 KEMVMRTVYCTNIDKMVTQLDVKKFFEELCGEVSRLRLLGDNVHSTRIAFVEFVHAEGAI 265
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILP 196
ALN G +LG PVRV PSKT + P
Sbjct: 266 MALNCSGMILGTLPVRVSPSKTPVKP 291
>gi|326514092|dbj|BAJ92196.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326532980|dbj|BAJ89335.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 351
Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 137/241 (56%), Positives = 163/241 (67%), Gaps = 32/241 (13%)
Query: 31 ESEFTVQKLVDMFTKLNPLAKEFFP------------------------SYYH-----QH 61
E + V+KL ++F KLNP A+EF P YY QH
Sbjct: 48 EYKSDVRKLEELFKKLNPSAEEFVPLSRRQGDGARRLSADAPVFVSPAIDYYAPHHPFQH 107
Query: 62 TDHHFSVINNNFADDNKQSAIDNFNN---NRRRRNNFNQGRKRLSGRAFRAQREDSVRRT 118
H + + S+ D N NRRRRN FNQGR+R+ R R REDSVRRT
Sbjct: 108 QQMHVLQVVGGGGGAGRDSSSDGSANGQPNRRRRNGFNQGRRRMGVRPRRTDREDSVRRT 167
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGT 178
VYVSDIDQ++TE++LA +FS+CGQVVDCR+CGDP+SV+RFAF+EFAD+ GARAAL LGGT
Sbjct: 168 VYVSDIDQHVTEQKLAEVFSNCGQVVDCRICGDPNSVMRFAFIEFADDVGARAALALGGT 227
Query: 179 MLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAAC 238
+LG+YPVRVLPSKTAILPVNP FLPR+EDE+EM SRTVYCTNIDK VP+ VK FFE C
Sbjct: 228 VLGFYPVRVLPSKTAILPVNPKFLPRTEDEKEMVSRTVYCTNIDKNVPEDVVKNFFEGIC 287
Query: 239 G 239
G
Sbjct: 288 G 288
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGAR 170
++ V RTVY ++ID+N+ E+ + F CG+V R+ GD AFVEF + GA
Sbjct: 258 KEMVSRTVYCTNIDKNVPEDVVKNFFEGICGEVARLRLLGDYVHATCIAFVEFVEAEGAI 317
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNP 199
ALN G +LG PVRV PSKT + P +P
Sbjct: 318 LALNCSGMLLGSLPVRVSPSKTPVRPRSP 346
>gi|357127346|ref|XP_003565343.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Brachypodium distachyon]
Length = 310
Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 128/216 (59%), Positives = 153/216 (70%), Gaps = 12/216 (5%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSV------------INNNFADDNKQSAID 83
VQKLVD+ + LNP A+EF PS + S N D S
Sbjct: 32 VQKLVDLLSNLNPAAREFVPSSAAPPSKKALSADAPVFDYCSIGGANGGSRDSGVDSTYI 91
Query: 84 NFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQV 143
++ R N GR+R++ RA RA REDS+RRTVYVS++D +TEERLA +F++CGQV
Sbjct: 92 GNQQHKMRSGYINHGRRRMNERARRADREDSIRRTVYVSELDHTVTEERLADIFANCGQV 151
Query: 144 VDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLP 203
VDCR+CGDPHSVLRFAF+EF+DE GARAALNLGGTMLG+YPVRVLPSKTAILPVNP FLP
Sbjct: 152 VDCRICGDPHSVLRFAFIEFSDEEGARAALNLGGTMLGFYPVRVLPSKTAILPVNPKFLP 211
Query: 204 RSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
R+EDE+EM RT+YCTNIDKKV Q +VK FF+ CG
Sbjct: 212 RTEDEKEMVIRTIYCTNIDKKVTQLDVKSFFQELCG 247
Score = 70.1 bits (170), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGAR 170
++ V RT+Y ++ID+ +T+ + F CG+V R+ GD R AFVEF + GA
Sbjct: 217 KEMVIRTIYCTNIDKKVTQLDVKSFFQELCGEVSRLRLLGDNVHSTRIAFVEFVNAEGAI 276
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILP 196
ALN G +LG PVRV PSKT + P
Sbjct: 277 MALNCSGMILGTLPVRVSPSKTPVKP 302
>gi|218198344|gb|EEC80771.1| hypothetical protein OsI_23281 [Oryza sativa Indica Group]
Length = 372
Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 139/258 (53%), Positives = 168/258 (65%), Gaps = 37/258 (14%)
Query: 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFP------------------------- 55
K+ E ++ +S+ +KL ++F KLNP A+EF P
Sbjct: 51 KDGGEEVREYKSD--ARKLEELFKKLNPSAEEFVPLARRRGGGDGARRLSADAPVFVSPA 108
Query: 56 -SYYHQHTDHHFSVIN---------NNFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGR 105
+Y QH I D+ N NRRRR++FNQGR+R+ GR
Sbjct: 109 IDFYSQHPVQQPPPIQVLPVVVGGGGGAGLDSSSDGSTNGQPNRRRRSSFNQGRRRMGGR 168
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD 165
R REDSVRRTVYVSDIDQ++TE++LA +FS+CGQVVDCR+CGDP+SVLRFAF+EFAD
Sbjct: 169 PRRTDREDSVRRTVYVSDIDQHVTEQKLAEVFSNCGQVVDCRICGDPNSVLRFAFIEFAD 228
Query: 166 EHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ GARAAL LGGT+LGYYPVRVLPSKTAILPVNP FLPR+EDE+EM SRTVYCTNIDK V
Sbjct: 229 DVGARAALTLGGTVLGYYPVRVLPSKTAILPVNPKFLPRTEDEKEMVSRTVYCTNIDKNV 288
Query: 226 PQAEVKQFFEAACGGEVR 243
P+ VK FFE CG R
Sbjct: 289 PEDAVKSFFEGMCGEVAR 306
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGAR 170
++ V RTVY ++ID+N+ E+ + F CG+V R+ GD AFVEF A
Sbjct: 272 KEMVSRTVYCTNIDKNVPEDAVKSFFEGMCGEVARLRLLGDYVHSTCIAFVEFVQADSAI 331
Query: 171 AALNLGGTMLGYYPVR-------VLPSKTAILPVNP 199
AL+ G +LG PVR V PSKT + P +P
Sbjct: 332 LALSCSGMVLGALPVRQANTPYAVSPSKTPVRPRSP 367
>gi|222635710|gb|EEE65842.1| hypothetical protein OsJ_21610 [Oryza sativa Japonica Group]
Length = 367
Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 139/258 (53%), Positives = 168/258 (65%), Gaps = 37/258 (14%)
Query: 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFP------------------------- 55
K+ E ++ +S+ +KL ++F KLNP A+EF P
Sbjct: 48 KDGGEEVREYKSD--ARKLEELFKKLNPSAEEFVPLARRRGGGDGARRLSADAPVFVSPA 105
Query: 56 -SYYHQHTDHHFSVIN---------NNFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGR 105
+Y QH I D+ N NRRRR++FNQGR+R+ GR
Sbjct: 106 IDFYSQHPVQQPPPIQVLPVVVGGGGGAGLDSSSDGSTNGQPNRRRRSSFNQGRRRMGGR 165
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD 165
R REDSVRRTVYVSDIDQ++TE++LA +FS+CGQVVDCR+CGDP+SVLRFAF+EFAD
Sbjct: 166 PRRTDREDSVRRTVYVSDIDQHVTEQKLAEVFSNCGQVVDCRICGDPNSVLRFAFIEFAD 225
Query: 166 EHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ GARAAL LGGT+LGYYPVRVLPSKTAILPVNP FLPR+EDE+EM SRTVYCTNIDK V
Sbjct: 226 DVGARAALTLGGTVLGYYPVRVLPSKTAILPVNPKFLPRTEDEKEMVSRTVYCTNIDKNV 285
Query: 226 PQAEVKQFFEAACGGEVR 243
P+ VK FFE CG R
Sbjct: 286 PEDAVKSFFEGMCGEVAR 303
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGAR 170
++ V RTVY ++ID+N+ E+ + F CG+V R+ GD AFVEF A
Sbjct: 269 KEMVSRTVYCTNIDKNVPEDAVKSFFEGMCGEVARLRLLGDYVHSTCIAFVEFVQADSAI 328
Query: 171 AALNLGGTMLGYYP 184
AL+ G +LG P
Sbjct: 329 LALSCSGMVLGALP 342
>gi|226530673|ref|NP_001141946.1| uncharacterized protein LOC100274095 [Zea mays]
gi|194706550|gb|ACF87359.1| unknown [Zea mays]
gi|195626910|gb|ACG35285.1| CID11 [Zea mays]
gi|413947723|gb|AFW80372.1| CID11 [Zea mays]
Length = 302
Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 140/256 (54%), Positives = 167/256 (65%), Gaps = 34/256 (13%)
Query: 1 MAAVADMPGDAAAANNTNNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQ 60
MAAVA+ AAA K+ E + VQKLVD+ + LNP AKEF PS
Sbjct: 1 MAAVAEGSASAAA--------------KEVEYQAGVQKLVDLLSNLNPAAKEFVPSSAPA 46
Query: 61 HT---------------DHHFSVINNNFADDNKQSAIDNFNNNRRRRNN--FNQGRKRLS 103
D+ + N DD F N +R+R N NQGR+R +
Sbjct: 47 AAASPPKKALSADAPVFDYRSTAGGNGATDDPFYVG---FGNQQRKRGNGYINQGRRRTN 103
Query: 104 GRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEF 163
R RA REDSVRRTVYVS++D +TEERLA +F++CG VVDCR+CGDPHSVLRFAF+EF
Sbjct: 104 DRLRRADREDSVRRTVYVSELDHTVTEERLADIFATCGHVVDCRICGDPHSVLRFAFIEF 163
Query: 164 ADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDK 223
+DE GAR ALNLGGT+ G+YPVRVLPSKTAILPVNP FLPR++DE+EM RTVYCTNIDK
Sbjct: 164 SDEEGARTALNLGGTIFGFYPVRVLPSKTAILPVNPKFLPRTDDEKEMVMRTVYCTNIDK 223
Query: 224 KVPQAEVKQFFEAACG 239
V Q +VK+FFE CG
Sbjct: 224 MVTQLDVKKFFEELCG 239
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/86 (44%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGAR 170
++ V RTVY ++ID+ +T+ + F CG+V R+ GD R AFVEF GA
Sbjct: 209 KEMVMRTVYCTNIDKMVTQLDVKKFFEELCGEVSRLRLLGDNVHSTRIAFVEFVHAEGAI 268
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILP 196
ALN G +LG PVRV PSKT + P
Sbjct: 269 MALNCSGMILGTLPVRVSPSKTPVKP 294
>gi|50725622|dbj|BAD33089.1| putative RNA-binding protein RBP37 [Oryza sativa Japonica Group]
gi|182375457|dbj|BAG24017.1| RNA-binding protein [Oryza sativa Japonica Group]
gi|215736921|dbj|BAG95850.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222639804|gb|EEE67936.1| hypothetical protein OsJ_25822 [Oryza sativa Japonica Group]
Length = 302
Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 122/218 (55%), Positives = 151/218 (69%), Gaps = 11/218 (5%)
Query: 33 EFTVQKLVDMFTKLNPLAKEFFP-----------SYYHQHTDHHFSVINNNFADDNKQSA 81
E ++ L D+ +KLNP+A+EF P +YY T H + A +
Sbjct: 22 EREMRDLEDLLSKLNPMAEEFVPPSLAAASPTAYAYYPTPTPSHVFPAVDGLAGPRPRKK 81
Query: 82 IDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCG 141
+ G++R++ R AQR++ +RRTVYVSDID +TEE+LA LF +CG
Sbjct: 82 GGGGGGGGGFGGQGHAGKRRMNSRTSMAQRDEVIRRTVYVSDIDHQVTEEQLAALFINCG 141
Query: 142 QVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTF 201
QVVDCR+CGDP+SVLRFAF+EF DE ARAALNL GT+LGYYPVRVLPSKTAI PVNPTF
Sbjct: 142 QVVDCRMCGDPNSVLRFAFIEFTDEESARAALNLSGTVLGYYPVRVLPSKTAIAPVNPTF 201
Query: 202 LPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
LPRS+DEREMC+RT+YCTNIDKKV QA+VK FFE+ CG
Sbjct: 202 LPRSDDEREMCARTIYCTNIDKKVSQADVKLFFESICG 239
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +++ + F S CG+V R+ GD H R AFVEF A AALN
Sbjct: 214 RTIYCTNIDKKVSQADVKLFFESICGEVYRLRLLGDYHHSTRIAFVEFVMAESATAALNC 273
Query: 176 GGTMLGYYPVRVLPSKTAILPVNP 199
G +LG P+RV PSKT + P P
Sbjct: 274 SGVILGSLPIRVSPSKTPVRPRAP 297
>gi|357124236|ref|XP_003563809.1| PREDICTED: uncharacterized protein LOC100835921 [Brachypodium
distachyon]
Length = 351
Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 135/247 (54%), Positives = 166/247 (67%), Gaps = 34/247 (13%)
Query: 26 ETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQH-----------------TDHH--- 65
E + E + V+KL ++F KLNP A+EF P Q D++
Sbjct: 43 EDEVREYKSDVRKLEELFKKLNPSAEEFVPLSRRQADGGRRLSADAPVFVSPAIDYYAPH 102
Query: 66 -------------FSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQRE 112
V+ D + ++ N NRRRRN FNQGR+R+ R R RE
Sbjct: 103 HPFQQQQPQQMHVLQVVGGGGRDSSSDGSV-NGQPNRRRRNGFNQGRRRMGPRPRRTDRE 161
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
DSVRRTVYVSDIDQ++TE++LA +FS+CGQVVDCR+CGDP+SV+RFAF+EFAD+ GARAA
Sbjct: 162 DSVRRTVYVSDIDQHVTEQKLAEVFSNCGQVVDCRICGDPNSVMRFAFIEFADDVGARAA 221
Query: 173 LNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
L+L GT+LGYYPVRVLPSKTAILPVNP FLPR+EDE+EM SRTVYCTNIDK VP+ VK+
Sbjct: 222 LSLAGTILGYYPVRVLPSKTAILPVNPKFLPRTEDEKEMVSRTVYCTNIDKNVPEDVVKK 281
Query: 233 FFEAACG 239
FFE CG
Sbjct: 282 FFEGICG 288
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGAR 170
++ V RTVY ++ID+N+ E+ + F CG+V R+ GD AFVEF GA
Sbjct: 258 KEMVSRTVYCTNIDKNVPEDVVKKFFEGICGEVARLRLLGDYVHSTCIAFVEFVQAEGAI 317
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNP 199
ALN G +LG PVRV PSKT + P +P
Sbjct: 318 MALNCSGMLLGSLPVRVSPSKTPVRPRSP 346
>gi|388492572|gb|AFK34352.1| unknown [Medicago truncatula]
Length = 376
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 131/239 (54%), Positives = 166/239 (69%), Gaps = 25/239 (10%)
Query: 20 NKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFP-------SYYHQHTDHHFS----- 67
N N E+ K E ++ L ++ +KLNP+A+EF P Y F
Sbjct: 93 NGENGGESFKRE----MRDLEELLSKLNPMAEEFVPPSLTNNHGYLAAGPAAGFGYPNNF 148
Query: 68 VINNNFADDNKQSAIDNFNNNRRRRNNFN-QGRKRLSGRAFRAQREDSVRRTVYVSDIDQ 126
++ NN+A+ N Q+ NRRR+N + G++R + + +RE+ +RRTVY SDIDQ
Sbjct: 149 ILLNNYANANGQT-------NRRRKNGYTTNGKRRANHKVDMEKREEMIRRTVYASDIDQ 201
Query: 127 NITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVR 186
+TEE+LA LF +CGQVVDCRVC DP+S+LRFAF+EF DE ARAA++L GTMLGYYP+R
Sbjct: 202 LVTEEQLASLFLNCGQVVDCRVCRDPNSILRFAFIEFTDEESARAAVSLSGTMLGYYPLR 261
Query: 187 VLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTL 245
VLPSKTAI PVNPTFLPRSEDEREMCSRT+YCTNIDKK+ QA+VK FFE+ C GEV L
Sbjct: 262 VLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFFESIC-GEVHRL 319
Score = 70.1 bits (170), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +T+ + F S CG+V R+ GD R AFVEFA A AAL+
Sbjct: 289 RTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYQHSTRIAFVEFAVAESAIAALSC 348
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRS 205
G +LG P+RV PSKT PV PRS
Sbjct: 349 SGVILGALPIRVSPSKT---PVRARSSPRS 375
>gi|115445273|ref|NP_001046416.1| Os02g0244600 [Oryza sativa Japonica Group]
gi|50252270|dbj|BAD28276.1| putative RNA-binding protein [Oryza sativa Japonica Group]
gi|113535947|dbj|BAF08330.1| Os02g0244600 [Oryza sativa Japonica Group]
Length = 359
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 120/153 (78%), Positives = 135/153 (88%)
Query: 87 NNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDC 146
NRRRR+ FNQGR+R GR RA REDSVRRTVYVSDIDQ +TE++LA +FS+CGQVVDC
Sbjct: 144 QNRRRRSGFNQGRRRTGGRTRRADREDSVRRTVYVSDIDQQVTEQKLAEVFSNCGQVVDC 203
Query: 147 RVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSE 206
R+CGDPHSVLRFAF+EFAD+ GARAAL LGGTMLGYYPVRVLPSKTAILPVNP FLPR+E
Sbjct: 204 RICGDPHSVLRFAFIEFADDAGARAALTLGGTMLGYYPVRVLPSKTAILPVNPKFLPRTE 263
Query: 207 DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
DE+EM SRTVYCTNIDKKV + +VK FF+ CG
Sbjct: 264 DEKEMVSRTVYCTNIDKKVTEEDVKIFFQQLCG 296
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGAR 170
++ V RTVY ++ID+ +TEE + F CG+V R+ GD AFVEFA A
Sbjct: 266 KEMVSRTVYCTNIDKKVTEEDVKIFFQQLCGKVSRLRLLGDYVHSTCIAFVEFAQAESAI 325
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFL 202
ALN G +LG P+RV PSKT + P +P +
Sbjct: 326 LALNYSGMVLGTLPIRVSPSKTPVRPRSPRVM 357
>gi|125581461|gb|EAZ22392.1| hypothetical protein OsJ_06050 [Oryza sativa Japonica Group]
Length = 299
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 120/153 (78%), Positives = 135/153 (88%)
Query: 87 NNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDC 146
NRRRR+ FNQGR+R GR RA REDSVRRTVYVSDIDQ +TE++LA +FS+CGQVVDC
Sbjct: 84 QNRRRRSGFNQGRRRTGGRTRRADREDSVRRTVYVSDIDQQVTEQKLAEVFSNCGQVVDC 143
Query: 147 RVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSE 206
R+CGDPHSVLRFAF+EFAD+ GARAAL LGGTMLGYYPVRVLPSKTAILPVNP FLPR+E
Sbjct: 144 RICGDPHSVLRFAFIEFADDAGARAALTLGGTMLGYYPVRVLPSKTAILPVNPKFLPRTE 203
Query: 207 DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
DE+EM SRTVYCTNIDKKV + +VK FF+ CG
Sbjct: 204 DEKEMVSRTVYCTNIDKKVTEEDVKIFFQQLCG 236
Score = 71.2 bits (173), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGAR 170
++ V RTVY ++ID+ +TEE + F CG+V R+ GD AFVEFA A
Sbjct: 206 KEMVSRTVYCTNIDKKVTEEDVKIFFQQLCGKVSRLRLLGDYVHSTCIAFVEFAQAESAI 265
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFL 202
ALN G +LG P+RV PSKT + P +P +
Sbjct: 266 LALNYSGMVLGTLPIRVSPSKTPVRPRSPRVM 297
>gi|218190389|gb|EEC72816.1| hypothetical protein OsI_06525 [Oryza sativa Indica Group]
Length = 287
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 120/153 (78%), Positives = 135/153 (88%)
Query: 87 NNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDC 146
NRRRR+ FNQGR+R GR RA REDSVRRTVYVSDIDQ +TE++LA +FS+CGQVVDC
Sbjct: 72 QNRRRRSGFNQGRRRTGGRTRRADREDSVRRTVYVSDIDQQVTEQKLAEVFSNCGQVVDC 131
Query: 147 RVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSE 206
R+CGDPHSVLRFAF+EFAD+ GARAAL LGGTMLGYYPVRVLPSKTAILPVNP FLPR+E
Sbjct: 132 RICGDPHSVLRFAFIEFADDAGARAALTLGGTMLGYYPVRVLPSKTAILPVNPKFLPRTE 191
Query: 207 DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
DE+EM SRTVYCTNIDKKV + +VK FF+ CG
Sbjct: 192 DEKEMVSRTVYCTNIDKKVTEEDVKIFFQQLCG 224
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGAR 170
++ V RTVY ++ID+ +TEE + F CG+V R+ GD AFVEFA A
Sbjct: 194 KEMVSRTVYCTNIDKKVTEEDVKIFFQQLCGKVSRLRLLGDYVHSTCIAFVEFAQAESAI 253
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFL 202
ALN G +LG P+RV PSKT + P +P +
Sbjct: 254 LALNYSGMVLGTLPIRVSPSKTPVRPRSPRVM 285
>gi|218200388|gb|EEC82815.1| hypothetical protein OsI_27601 [Oryza sativa Indica Group]
Length = 277
Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 121/218 (55%), Positives = 148/218 (67%), Gaps = 36/218 (16%)
Query: 33 EFTVQKLVDMFTKLNPLAKEFFP-----------SYYHQHTDHHFSVINNNFADDNKQSA 81
E ++ L D+ +KLNP+A+EF P +YY T H
Sbjct: 22 EREMRDLEDLLSKLNPMAEEFVPPSLAAASPTAYAYYPTPTPSHVFPAG----------- 70
Query: 82 IDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCG 141
+ G++R++ R AQR++ +RRTVYVSDID +TEE+LA LF +CG
Sbjct: 71 --------------HAGKRRMNRRTSMAQRDEVIRRTVYVSDIDHQVTEEQLAALFINCG 116
Query: 142 QVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTF 201
QVVDCR+CGDP+SVLRFAF+EF DE ARAALNL GT+LGYYPVRVLPSKTAI PVNPTF
Sbjct: 117 QVVDCRMCGDPNSVLRFAFIEFTDEESARAALNLSGTVLGYYPVRVLPSKTAIAPVNPTF 176
Query: 202 LPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
LPRS+DEREMC+RT+YCTNIDKKV QA+VK FFE+ CG
Sbjct: 177 LPRSDDEREMCARTIYCTNIDKKVSQADVKLFFESICG 214
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +++ + F S CG+V R+ GD H R AFVEF A AALN
Sbjct: 189 RTIYCTNIDKKVSQADVKLFFESICGEVYRLRLLGDYHHSTRIAFVEFVMAESATAALNC 248
Query: 176 GGTMLGYYPVRVLPSKTAILPVNP 199
G +LG P+RV PSKT + P P
Sbjct: 249 SGVILGSLPIRVSPSKTPVRPRAP 272
>gi|224028543|gb|ACN33347.1| unknown [Zea mays]
gi|413941691|gb|AFW74340.1| CID11 [Zea mays]
Length = 328
Score = 237 bits (604), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 122/233 (52%), Positives = 151/233 (64%), Gaps = 26/233 (11%)
Query: 33 EFTVQKLVDMFTKLNPLAKEFFP-----------------SYYHQHTDHHFSVINNN--- 72
E ++ L D+ +KLNP+A+EF P +Y F+V +
Sbjct: 33 EREMRDLEDLLSKLNPMAEEFVPPSLASPAALTPAPLSPAAYGFYPAGAGFAVASPGHGG 92
Query: 73 ------FADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQ 126
AD + + + R+R + R AQR++ +RRTVYVSDID
Sbjct: 93 VVGFPAVADAHAARGRKKGGAGGGFSGHGHPARRRTNSRTSMAQRDEIIRRTVYVSDIDH 152
Query: 127 NITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVR 186
+TEE LA LF +CGQVVDCR+CGDP+SVLRFAF+EF DE GARAALNL GT+LGYYPVR
Sbjct: 153 QVTEENLAALFINCGQVVDCRMCGDPNSVLRFAFIEFTDEEGARAALNLSGTVLGYYPVR 212
Query: 187 VLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
VLPSKTAI PVNPTFLPRS+DEREMC+RT+YCTNIDKKV QA++K FFE+ CG
Sbjct: 213 VLPSKTAIAPVNPTFLPRSDDEREMCARTIYCTNIDKKVTQADLKLFFESICG 265
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +T+ L F S CG+V R+ GD H R AFVEF A AALN
Sbjct: 240 RTIYCTNIDKKVTQADLKLFFESICGEVFRLRLLGDYHHSTRIAFVEFVMAESATAALNC 299
Query: 176 GGTMLGYYPVRVLPSKTAILPVNP 199
G +LG P+RV PSKT + P P
Sbjct: 300 SGVILGSLPIRVSPSKTPVRPRAP 323
>gi|226529745|ref|NP_001150079.1| CID11 [Zea mays]
gi|195636508|gb|ACG37722.1| CID11 [Zea mays]
Length = 328
Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 123/233 (52%), Positives = 152/233 (65%), Gaps = 26/233 (11%)
Query: 33 EFTVQKLVDMFTKLNPLAKEFFP-----------------SYYHQHTDHHFSVINNN--- 72
E ++ L D+ +KLNP+A+EF P +Y F+V +
Sbjct: 33 EREMRDLEDLLSKLNPMAEEFVPPSLASPAALTPAPLSPAAYGFYPAGAGFAVASPGHGG 92
Query: 73 ------FADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQ 126
AD + + + GR+R + R AQR++ +RRTVYVSDID
Sbjct: 93 VVGFPAVADAHAARGRKKGGAGGGFSGHGHPGRRRTNSRTSMAQRDEIIRRTVYVSDIDH 152
Query: 127 NITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVR 186
+TEE LA LF +CGQVVDCR+CGDP+SVLRFAF+EF DE GARAALNL GT+LGYYPVR
Sbjct: 153 QVTEENLAALFINCGQVVDCRMCGDPNSVLRFAFIEFTDEEGARAALNLSGTVLGYYPVR 212
Query: 187 VLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
VLPSKTAI PVNPTFLPRS+DEREMC+RT+YCTNIDKKV QA++K FFE+ CG
Sbjct: 213 VLPSKTAIAPVNPTFLPRSDDEREMCARTIYCTNIDKKVTQADLKLFFESICG 265
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +T+ L F S CG+V R+ GD H R AFVEF A AALN
Sbjct: 240 RTIYCTNIDKKVTQADLKLFFESICGEVFRLRLLGDYHHSTRIAFVEFVMAESATAALNC 299
Query: 176 GGTMLGYYPVRVLPSKTAILPVNP 199
G +LG P+RV PSKT + P P
Sbjct: 300 SGVILGSLPIRVSPSKTPVRPRAP 323
>gi|357140847|ref|XP_003571974.1| PREDICTED: uncharacterized protein LOC100841044 [Brachypodium
distachyon]
Length = 350
Score = 236 bits (603), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 133/234 (56%), Positives = 160/234 (68%), Gaps = 30/234 (12%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHT----------DHHFSVINNNF------------ 73
++KL ++ +KLNP A+EF PS + D V F
Sbjct: 54 MRKLEELMSKLNPCAQEFVPSSRRAASAPAPGGGLSADAPVFVSAAEFFGAGAGQLQGTG 113
Query: 74 -------ADDNKQSAIDNFNNNRRRRN-NFNQGRKRLSGRAFRAQREDSVRRTVYVSDID 125
+ D + N R RRN +FNQGR+R+ GR R+ REDSVRRTVYVSD+D
Sbjct: 114 AGGGRDSSSDGSSNGGGQPQNRRIRRNGSFNQGRRRMGGRTRRSDREDSVRRTVYVSDVD 173
Query: 126 QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPV 185
Q +TE++LA +FS+CGQVVDCR+CGDPHSVLRFAF+EFAD+ GARAALNL GTMLGYYPV
Sbjct: 174 QQVTEQKLAEVFSNCGQVVDCRICGDPHSVLRFAFIEFADDAGARAALNLAGTMLGYYPV 233
Query: 186 RVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
RVLPSKTAILPVNP FLPR+EDE+EM SRTVYCTNIDKKV + +VK FF+ CG
Sbjct: 234 RVLPSKTAILPVNPKFLPRTEDEKEMVSRTVYCTNIDKKVTEDDVKIFFQRLCG 287
Score = 66.6 bits (161), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGAR 170
++ V RTVY ++ID+ +TE+ + F CG+V R+ GD AFVEF A
Sbjct: 257 KEMVSRTVYCTNIDKKVTEDDVKIFFQRLCGKVSRLRLLGDYVHSTCIAFVEFTQAESAI 316
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFL 202
ALN G +LG P+RV PSKT + P +P +
Sbjct: 317 LALNYSGLVLGSLPIRVSPSKTPVRPRSPRVM 348
>gi|147803358|emb|CAN68836.1| hypothetical protein VITISV_026310 [Vitis vinifera]
Length = 195
Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 108/131 (82%), Positives = 119/131 (90%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHG 168
AQRE+ ++RTVYVSDIDQ +TEE LA LF +CGQVVDCR+CGDP+SVLRFAFVEF DE G
Sbjct: 2 AQREEVIKRTVYVSDIDQQVTEEDLAALFINCGQVVDCRICGDPNSVLRFAFVEFTDEEG 61
Query: 169 ARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
ARAAL+L GTMLGYYPVRVLPSKTAI PVNPTFLPRSEDEREMC+RT+YCTNIDKKV QA
Sbjct: 62 ARAALSLAGTMLGYYPVRVLPSKTAIAPVNPTFLPRSEDEREMCARTIYCTNIDKKVTQA 121
Query: 229 EVKQFFEAACG 239
EVK FFE+ CG
Sbjct: 122 EVKLFFESICG 132
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +T+ + F S CG+V R+ GD H R AFVEF A AALN
Sbjct: 107 RTIYCTNIDKKVTQAEVKLFFESICGEVHRLRLLGDYHHSTRIAFVEFVMAESAIAALNC 166
Query: 176 GGTMLGYYPVRVLPSKTAILPVNP 199
G +LG P+RV PSKT + P P
Sbjct: 167 SGAILGSLPIRVSPSKTPVRPRAP 190
>gi|62867578|emb|CAI84654.1| hypothetical protein [Nicotiana tabacum]
Length = 201
Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 107/138 (77%), Positives = 126/138 (91%)
Query: 102 LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFV 161
++ RA++AQREDS+RRTVYV++ID N+TEE+LA LFS+ GQVVDCR+CGDPHS LRFAFV
Sbjct: 1 MNNRAYKAQREDSIRRTVYVAEIDNNVTEEQLAALFSAYGQVVDCRICGDPHSRLRFAFV 60
Query: 162 EFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNI 221
EFADE+ ARAAL+L GT+LG+ P++VLPSKTAILPVNPTFLPRSEDEREMC+RTVYCTNI
Sbjct: 61 EFADEYSARAALSLCGTILGFSPLKVLPSKTAILPVNPTFLPRSEDEREMCARTVYCTNI 120
Query: 222 DKKVPQAEVKQFFEAACG 239
DKKV QA+VK FFE CG
Sbjct: 121 DKKVTQADVKNFFETRCG 138
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RTVY ++ID+ +T+ + F + CG+V R+ GD R AFVEF A AL+
Sbjct: 113 RTVYCTNIDKKVTQADVKNFFETRCGEVSRLRLLGDHVHSTRIAFVEFVMAESAILALDC 172
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRS 205
G +LG +RV PSKT PV P LPR+
Sbjct: 173 CGEILGSQRIRVSPSKT---PVRPR-LPRA 198
>gi|326514404|dbj|BAJ96189.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 324
Score = 233 bits (595), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 121/238 (50%), Positives = 152/238 (63%), Gaps = 28/238 (11%)
Query: 26 ETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQH------------------------ 61
E E ++ L ++ +KLNP+A+EF P H
Sbjct: 28 EEGGDAGEREMRDLEELLSKLNPMAEEFVPPSLAAHPMPPPPYAGYYPNGPPAAGFAPVA 87
Query: 62 TDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYV 121
+ H V+ AD + + G++R++ R +AQR++ +RRTVYV
Sbjct: 88 SPGHRGVVGFPAADGRGRKKFGGGYGG----GYPHGGKRRVNSRTSQAQRDEVIRRTVYV 143
Query: 122 SDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLG 181
SDID +TEE+LA LF + GQVVDCR+CGDP+SVLRFAF+EF DE GARAAL L GT+LG
Sbjct: 144 SDIDHQVTEEQLAALFINVGQVVDCRMCGDPNSVLRFAFIEFTDEEGARAALTLSGTVLG 203
Query: 182 YYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
YYPVRVLPSKTAI PVNPTFLPRS+DEREMC+RT+YCTNIDKKV QA+VK FFE+ CG
Sbjct: 204 YYPVRVLPSKTAIAPVNPTFLPRSDDEREMCARTIYCTNIDKKVSQADVKLFFESICG 261
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +++ + F S CG+V R+ GD R AFVEF A AALN
Sbjct: 236 RTIYCTNIDKKVSQADVKLFFESICGEVYRLRLLGDYQHNTRIAFVEFVMAESATAALNC 295
Query: 176 GGTMLGYYPVRVLPSKTAILPVNP 199
G +LG P+RV P KT + P P
Sbjct: 296 SGVILGSLPIRVSPFKTPVRPRAP 319
>gi|242093252|ref|XP_002437116.1| hypothetical protein SORBIDRAFT_10g021290 [Sorghum bicolor]
gi|241915339|gb|EER88483.1| hypothetical protein SORBIDRAFT_10g021290 [Sorghum bicolor]
Length = 364
Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 116/157 (73%), Positives = 137/157 (87%), Gaps = 1/157 (0%)
Query: 84 NFNNNRRRRNNFNQGRKRLSGRAFR-AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQ 142
N NRRRRN F QGR+R+ G R + REDSVRRTVYVSDIDQ++TE++LA +FS+CGQ
Sbjct: 145 NGQPNRRRRNGFIQGRRRMMGGRPRRSDREDSVRRTVYVSDIDQHVTEQKLAEVFSTCGQ 204
Query: 143 VVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFL 202
VVDCR+CGDP+SVLRFAF+EFAD+ GA+AAL LGGT+LG+YPV+VLPSKTAILPVNP FL
Sbjct: 205 VVDCRICGDPNSVLRFAFIEFADDVGAQAALALGGTVLGFYPVKVLPSKTAILPVNPKFL 264
Query: 203 PRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
PR+EDE+EM SRTVYCTNIDKK+ + EVKQFFE CG
Sbjct: 265 PRTEDEKEMVSRTVYCTNIDKKIGEDEVKQFFEGTCG 301
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLF-SSCGQVVDCRVCGDPHSVLRFAFVEFADEHGAR 170
++ V RTVY ++ID+ I E+ + F +CG+V R+ GD AFVEF A
Sbjct: 271 KEMVSRTVYCTNIDKKIGEDEVKQFFEGTCGEVSRLRLLGDYVHSTCIAFVEFVQADSAI 330
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNP 199
ALN G +LG PVRV PSKT + P +P
Sbjct: 331 LALNCSGIVLGTLPVRVSPSKTPVRPRSP 359
>gi|53793069|dbj|BAD54280.1| putative RNA-binding protein [Oryza sativa Japonica Group]
gi|53793076|dbj|BAD54286.1| putative RNA-binding protein [Oryza sativa Japonica Group]
Length = 206
Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 107/138 (77%), Positives = 122/138 (88%)
Query: 102 LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFV 161
+ GR R REDSVRRTVYVSDIDQ++TE++LA +FS+CGQVVDCR+CGDP+SVLRFAF+
Sbjct: 1 MGGRPRRTDREDSVRRTVYVSDIDQHVTEQKLAEVFSNCGQVVDCRICGDPNSVLRFAFI 60
Query: 162 EFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNI 221
EFAD+ GARAAL LGGT+LGYYPVRVLPSKTAILPVNP FLPR+EDE+EM SRTVYCTNI
Sbjct: 61 EFADDVGARAALTLGGTVLGYYPVRVLPSKTAILPVNPKFLPRTEDEKEMVSRTVYCTNI 120
Query: 222 DKKVPQAEVKQFFEAACG 239
DK VP+ VK FFE CG
Sbjct: 121 DKNVPEDAVKSFFEGMCG 138
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGAR 170
++ V RTVY ++ID+N+ E+ + F CG+V R+ GD AFVEF A
Sbjct: 108 KEMVSRTVYCTNIDKNVPEDAVKSFFEGMCGEVARLRLLGDYVHSTCIAFVEFVQADSAI 167
Query: 171 AALNLGGTMLGYYP 184
AL+ G +LG P
Sbjct: 168 LALSCSGMVLGALP 181
>gi|115474513|ref|NP_001060853.1| Os08g0116400 [Oryza sativa Japonica Group]
gi|113622822|dbj|BAF22767.1| Os08g0116400, partial [Oryza sativa Japonica Group]
Length = 283
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 105/141 (74%), Positives = 124/141 (87%)
Query: 99 RKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRF 158
++R++ R AQR++ +RRTVYVSDID +TEE+LA LF +CGQVVDCR+CGDP+SVLRF
Sbjct: 80 KRRMNSRTSMAQRDEVIRRTVYVSDIDHQVTEEQLAALFINCGQVVDCRMCGDPNSVLRF 139
Query: 159 AFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYC 218
AF+EF DE ARAALNL GT+LGYYPVRVLPSKTAI PVNPTFLPRS+DEREMC+RT+YC
Sbjct: 140 AFIEFTDEESARAALNLSGTVLGYYPVRVLPSKTAIAPVNPTFLPRSDDEREMCARTIYC 199
Query: 219 TNIDKKVPQAEVKQFFEAACG 239
TNIDKKV QA+VK FFE+ CG
Sbjct: 200 TNIDKKVSQADVKLFFESICG 220
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +++ + F S CG+V R+ GD H R AFVEF A AALN
Sbjct: 195 RTIYCTNIDKKVSQADVKLFFESICGEVYRLRLLGDYHHSTRIAFVEFVMAESATAALNC 254
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFL 202
G +LG P+RV PSKT + P P L
Sbjct: 255 SGVILGSLPIRVSPSKTPVRPRAPRQL 281
>gi|242080315|ref|XP_002444926.1| hypothetical protein SORBIDRAFT_07g001560 [Sorghum bicolor]
gi|241941276|gb|EES14421.1| hypothetical protein SORBIDRAFT_07g001560 [Sorghum bicolor]
Length = 348
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 106/141 (75%), Positives = 123/141 (87%)
Query: 99 RKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRF 158
R+R + R AQR++ +RRTVYVSDID +TEE LA LF +CGQVVDCR+CGDP+SVLRF
Sbjct: 145 RRRTNSRTSMAQRDEVIRRTVYVSDIDHQVTEENLAALFINCGQVVDCRMCGDPNSVLRF 204
Query: 159 AFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYC 218
AF+EF DE GARAALNL GT+LGYYPVRVLPSKTAI PVNPTFLPRS+DEREMC+RT+YC
Sbjct: 205 AFIEFTDEEGARAALNLSGTVLGYYPVRVLPSKTAIAPVNPTFLPRSDDEREMCARTIYC 264
Query: 219 TNIDKKVPQAEVKQFFEAACG 239
TNIDKKV QA++K FFE+ CG
Sbjct: 265 TNIDKKVTQADLKLFFESICG 285
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +T+ L F S CG+V R+ GD H R AFVEF A AALN
Sbjct: 260 RTIYCTNIDKKVTQADLKLFFESICGEVFRLRLLGDYHHSTRIAFVEFVMAESATAALNC 319
Query: 176 GGTMLGYYPVRVLPSKTAILPVNP 199
G +LG P+RV PSKT + P P
Sbjct: 320 SGVILGSLPIRVSPSKTPVRPRAP 343
>gi|357139501|ref|XP_003571320.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Brachypodium distachyon]
Length = 328
Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 122/240 (50%), Positives = 155/240 (64%), Gaps = 35/240 (14%)
Query: 33 EFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVIN---------NNFADDNKQSAID 83
E ++ L ++ +KLNP+A+EF P T H + N A + +
Sbjct: 28 EREMRDLEELLSKLNPMAEEFVPPSLA--TAPHPTAAGYAAAAGYYPNPSAGGGRGGFVA 85
Query: 84 NFNNNR------------RRRNNF------------NQGRKRLSGRAFRAQREDSVRRTV 119
+ +R R R F G++R++ R +AQR++ +RRTV
Sbjct: 86 SPAAHRGVVGFPAAPADGRGRKKFGGYAGAGPGGYPQGGKRRVNSRTSQAQRDEVIRRTV 145
Query: 120 YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTM 179
YVSDID +TEE+LA LF + GQVVDCR+CGDP+SVLRFAF+EF DE GARAAL L GT+
Sbjct: 146 YVSDIDHQVTEEQLAALFINVGQVVDCRMCGDPNSVLRFAFIEFTDEEGARAALTLSGTV 205
Query: 180 LGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
LGYYPVRVLPSKTAI PVNPTFLPRS+DEREMC+RT+YCTNID+KV QA+VK FFE+ CG
Sbjct: 206 LGYYPVRVLPSKTAIAPVNPTFLPRSDDEREMCARTIYCTNIDRKVSQADVKLFFESICG 265
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +++ + F S CG+V R+ GD R AFVEF A AALN
Sbjct: 240 RTIYCTNIDRKVSQADVKLFFESICGEVYRLRLLGDYQHNTRIAFVEFVMAESATAALNC 299
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFL 202
G +LG P+RV PSKT + P P L
Sbjct: 300 SGVILGSLPIRVSPSKTPVRPRAPRPL 326
>gi|14030687|gb|AAK53018.1|AF375434_1 At1g32790 [Arabidopsis thaliana]
gi|25090128|gb|AAN72236.1| At1g32790/F6N18_9 [Arabidopsis thaliana]
Length = 201
Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 104/138 (75%), Positives = 120/138 (86%)
Query: 102 LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFV 161
++ R AQRED +RRTVYVSD+DQ +TEE+LAGLF SCGQVVDCR+CGDP+SVLRFAF+
Sbjct: 1 MNARTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRICGDPNSVLRFAFI 60
Query: 162 EFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNI 221
EF DE GA ALNL GTMLG+YPV+VLPSKTAI PVNPTFLPR+EDE EMC+RT+YCTNI
Sbjct: 61 EFTDEEGAMTALNLSGTMLGFYPVKVLPSKTAIAPVNPTFLPRTEDESEMCARTIYCTNI 120
Query: 222 DKKVPQAEVKQFFEAACG 239
DKKV Q++VK FFE CG
Sbjct: 121 DKKVTQSDVKIFFEYFCG 138
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +T+ + F CG+V R+ GD R AFVEF A AALN
Sbjct: 113 RTIYCTNIDKKVTQSDVKIFFEYFCGEVYRLRLLGDYQHSTRIAFVEFVMAESAIAALNC 172
Query: 176 GGTMLGYYPVRVLPSKTAILPVNP 199
G +LG P+RV PSKT + P +P
Sbjct: 173 SGVVLGSLPIRVSPSKTPVRPRSP 196
>gi|212274583|ref|NP_001130716.1| hypothetical protein [Zea mays]
gi|194689926|gb|ACF79047.1| unknown [Zea mays]
gi|413954111|gb|AFW86760.1| hypothetical protein ZEAMMB73_977651 [Zea mays]
Length = 365
Score = 229 bits (584), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 114/157 (72%), Positives = 136/157 (86%), Gaps = 1/157 (0%)
Query: 84 NFNNNRRRRNNFNQGRKRLSG-RAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQ 142
N NRRRRN F QGR+R+ G R RA REDSVRRTVYVSD+DQ++TE++LA +FS+CGQ
Sbjct: 146 NGQPNRRRRNGFIQGRRRMMGARPRRADREDSVRRTVYVSDVDQHVTEQKLAEVFSTCGQ 205
Query: 143 VVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFL 202
VVDCR+CGDP+SVLRFAF+EFAD+ A+AAL LGGT+LG+YPV+VLPSKTAILPVNP FL
Sbjct: 206 VVDCRICGDPNSVLRFAFIEFADDVAAQAALALGGTVLGFYPVKVLPSKTAILPVNPKFL 265
Query: 203 PRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
P ++DE+EM SRTVYCTNIDKK+ + EVKQFFE CG
Sbjct: 266 PHTDDEKEMVSRTVYCTNIDKKIAEDEVKQFFEGTCG 302
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 50/89 (56%), Gaps = 1/89 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLF-SSCGQVVDCRVCGDPHSVLRFAFVEFADEHGAR 170
++ V RTVY ++ID+ I E+ + F +CG+V R+ GD AFVEF A
Sbjct: 272 KEMVSRTVYCTNIDKKIAEDEVKQFFEGTCGEVSRLRLLGDYVHSTCIAFVEFVQADSAI 331
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNP 199
ALN G +LG PVRV PSKT + +P
Sbjct: 332 LALNCSGIVLGTLPVRVSPSKTPVRSRSP 360
>gi|50725623|dbj|BAD33090.1| putative RNA-binding protein RBP37 [Oryza sativa Japonica Group]
Length = 201
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 104/138 (75%), Positives = 121/138 (87%)
Query: 102 LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFV 161
++ R AQR++ +RRTVYVSDID +TEE+LA LF +CGQVVDCR+CGDP+SVLRFAF+
Sbjct: 1 MNSRTSMAQRDEVIRRTVYVSDIDHQVTEEQLAALFINCGQVVDCRMCGDPNSVLRFAFI 60
Query: 162 EFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNI 221
EF DE ARAALNL GT+LGYYPVRVLPSKTAI PVNPTFLPRS+DEREMC+RT+YCTNI
Sbjct: 61 EFTDEESARAALNLSGTVLGYYPVRVLPSKTAIAPVNPTFLPRSDDEREMCARTIYCTNI 120
Query: 222 DKKVPQAEVKQFFEAACG 239
DKKV QA+VK FFE+ CG
Sbjct: 121 DKKVSQADVKLFFESICG 138
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +++ + F S CG+V R+ GD H R AFVEF A AALN
Sbjct: 113 RTIYCTNIDKKVSQADVKLFFESICGEVYRLRLLGDYHHSTRIAFVEFVMAESATAALNC 172
Query: 176 GGTMLGYYPVRVLPSKTAILPVNP 199
G +LG P+RV PSKT + P P
Sbjct: 173 SGVILGSLPIRVSPSKTPVRPRAP 196
>gi|413921445|gb|AFW61377.1| hypothetical protein ZEAMMB73_448284 [Zea mays]
Length = 315
Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 122/249 (48%), Positives = 155/249 (62%), Gaps = 35/249 (14%)
Query: 32 SEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTD------------------HHFSVINNNF 73
E ++ L D+ +KLNP+A+EF P + F +N F
Sbjct: 36 GEREMRDLEDLLSKLNPMAEEFVPPSLASPISGAGAGHGALTPAPLSPAAYGFYPVNAGF 95
Query: 74 ADDNKQ-------SAIDNFNNNRRRRNNFNQGRKR----------LSGRAFRAQREDSVR 116
A + A+ + + R + + G + R AQR++++R
Sbjct: 96 AVASPGHRGVVSFPAVADAHAGRGMKKDGAGGFGGHGHGHPGRRRTNSRTSMAQRDEAIR 155
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLG 176
RTVYVSDID +TEE LA LF +CGQVVDCR+CGDP+SVLRFAF+EF DE GARAALNL
Sbjct: 156 RTVYVSDIDHQVTEENLAALFINCGQVVDCRMCGDPNSVLRFAFIEFTDEEGARAALNLS 215
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEA 236
GT+LGYYPV+VLPSKTAI PVN TFLPRS+DEREMC+RT+YCTNIDKKV QA++K FFE+
Sbjct: 216 GTVLGYYPVKVLPSKTAIAPVNETFLPRSDDEREMCARTIYCTNIDKKVTQADLKLFFES 275
Query: 237 ACGGEVRTL 245
CG R+L
Sbjct: 276 ICGEVGRSL 284
>gi|308081540|ref|NP_001182915.1| uncharacterized protein LOC100501201 [Zea mays]
gi|238008164|gb|ACR35117.1| unknown [Zea mays]
gi|413921443|gb|AFW61375.1| hypothetical protein ZEAMMB73_448284 [Zea mays]
Length = 342
Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 120/243 (49%), Positives = 152/243 (62%), Gaps = 35/243 (14%)
Query: 32 SEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTD------------------HHFSVINNNF 73
E ++ L D+ +KLNP+A+EF P + F +N F
Sbjct: 36 GEREMRDLEDLLSKLNPMAEEFVPPSLASPISGAGAGHGALTPAPLSPAAYGFYPVNAGF 95
Query: 74 ADDNKQ-------SAIDNFNNNRRRRNNFNQGRKR----------LSGRAFRAQREDSVR 116
A + A+ + + R + + G + R AQR++++R
Sbjct: 96 AVASPGHRGVVSFPAVADAHAGRGMKKDGAGGFGGHGHGHPGRRRTNSRTSMAQRDEAIR 155
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLG 176
RTVYVSDID +TEE LA LF +CGQVVDCR+CGDP+SVLRFAF+EF DE GARAALNL
Sbjct: 156 RTVYVSDIDHQVTEENLAALFINCGQVVDCRMCGDPNSVLRFAFIEFTDEEGARAALNLS 215
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEA 236
GT+LGYYPV+VLPSKTAI PVN TFLPRS+DEREMC+RT+YCTNIDKKV QA++K FFE+
Sbjct: 216 GTVLGYYPVKVLPSKTAIAPVNETFLPRSDDEREMCARTIYCTNIDKKVTQADLKLFFES 275
Query: 237 ACG 239
CG
Sbjct: 276 ICG 278
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +T+ L F S CG+V R+ GD H R AFVEF A AALN
Sbjct: 253 RTIYCTNIDKKVTQADLKLFFESICGEVFRLRLLGDYHHSTRIAFVEFVMAESATAALNC 312
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFL 202
G +LG P+RV PSKT + P P L
Sbjct: 313 SGVVLGSLPIRVSPSKTPVRPRVPRHL 339
>gi|413921444|gb|AFW61376.1| hypothetical protein ZEAMMB73_448284 [Zea mays]
Length = 482
Score = 226 bits (577), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 120/242 (49%), Positives = 152/242 (62%), Gaps = 35/242 (14%)
Query: 33 EFTVQKLVDMFTKLNPLAKEFFPSYYHQHTD------------------HHFSVINNNFA 74
E ++ L D+ +KLNP+A+EF P + F +N FA
Sbjct: 37 EREMRDLEDLLSKLNPMAEEFVPPSLASPISGAGAGHGALTPAPLSPAAYGFYPVNAGFA 96
Query: 75 DDNKQ-------SAIDNFNNNRRRRNNFNQGRKR----------LSGRAFRAQREDSVRR 117
+ A+ + + R + + G + R AQR++++RR
Sbjct: 97 VASPGHRGVVSFPAVADAHAGRGMKKDGAGGFGGHGHGHPGRRRTNSRTSMAQRDEAIRR 156
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGG 177
TVYVSDID +TEE LA LF +CGQVVDCR+CGDP+SVLRFAF+EF DE GARAALNL G
Sbjct: 157 TVYVSDIDHQVTEENLAALFINCGQVVDCRMCGDPNSVLRFAFIEFTDEEGARAALNLSG 216
Query: 178 TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAA 237
T+LGYYPV+VLPSKTAI PVN TFLPRS+DEREMC+RT+YCTNIDKKV QA++K FFE+
Sbjct: 217 TVLGYYPVKVLPSKTAIAPVNETFLPRSDDEREMCARTIYCTNIDKKVTQADLKLFFESI 276
Query: 238 CG 239
CG
Sbjct: 277 CG 278
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +T+ L F S CG+V R+ GD H R AFVEF A AALN
Sbjct: 253 RTIYCTNIDKKVTQADLKLFFESICGEVFRLRLLGDYHHSTRIAFVEFVMAESATAALNC 312
Query: 176 GGTMLGYYPVRVL 188
G +LG P+ ++
Sbjct: 313 SGVVLGSLPISLM 325
>gi|195626410|gb|ACG35035.1| CID11 [Zea mays]
Length = 378
Score = 226 bits (576), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 111/153 (72%), Positives = 133/153 (86%), Gaps = 1/153 (0%)
Query: 88 NRRRRNNFNQGRKRLSGRAFRAQR-EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDC 146
NRRRRN+FN GR+R +G R EDSVRRTVYVSDIDQ++TE++LA +FS+CG+VVDC
Sbjct: 163 NRRRRNSFNHGRRRGAGGRPRRGDREDSVRRTVYVSDIDQHVTEQKLAEVFSNCGRVVDC 222
Query: 147 RVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSE 206
R+CGDPHSVLRFAF+EF+D+ GARAAL L GT+LG YPVRVLPSKTAILPVNP FLP+++
Sbjct: 223 RICGDPHSVLRFAFIEFSDDAGARAALTLAGTILGCYPVRVLPSKTAILPVNPKFLPQTD 282
Query: 207 DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
DE+EM SRTVYCTNIDKKV + +VK FF+ ACG
Sbjct: 283 DEKEMVSRTVYCTNIDKKVTEEDVKGFFQQACG 315
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFS-SCGQVVDCRVCGDPHSVLRFAFVEFADEHGAR 170
++ V RTVY ++ID+ +TEE + G F +CG+V R+ D AFVEFA A
Sbjct: 285 KEMVSRTVYCTNIDKKVTEEDVKGFFQQACGKVSRLRLLTDIVHSTCIAFVEFAQAESAI 344
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFL 202
ALN G +LG P+RV PSKT + P +P +
Sbjct: 345 MALNFSGMVLGSLPIRVSPSKTPVRPRSPRVM 376
>gi|212274823|ref|NP_001130545.1| uncharacterized protein LOC100191644 [Zea mays]
gi|194689440|gb|ACF78804.1| unknown [Zea mays]
gi|224030729|gb|ACN34440.1| unknown [Zea mays]
gi|413926010|gb|AFW65942.1| CID11 [Zea mays]
Length = 379
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 111/153 (72%), Positives = 133/153 (86%), Gaps = 1/153 (0%)
Query: 88 NRRRRNNFNQGRKRLSGRAFRAQR-EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDC 146
NRRRRN+FN GR+R +G R EDSVRRTVYVSDIDQ++TE++LA +FS+CG+VVDC
Sbjct: 164 NRRRRNSFNHGRRRGAGGRPRRGDREDSVRRTVYVSDIDQHVTEQKLAEVFSNCGRVVDC 223
Query: 147 RVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSE 206
R+CGDPHSVLRFAF+EF+D+ GARAAL L GT+LG YPVRVLPSKTAILPVNP FLP+++
Sbjct: 224 RICGDPHSVLRFAFIEFSDDGGARAALTLAGTILGCYPVRVLPSKTAILPVNPKFLPQTD 283
Query: 207 DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
DE+EM SRTVYCTNIDKKV + +VK FF+ ACG
Sbjct: 284 DEKEMVSRTVYCTNIDKKVTEEDVKGFFQQACG 316
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFS-SCGQVVDCRVCGDPHSVLRFAFVEFADEHGAR 170
++ V RTVY ++ID+ +TEE + G F +CG+V R+ D AFVEFA A
Sbjct: 286 KEMVSRTVYCTNIDKKVTEEDVKGFFQQACGKVSRLRLLTDIVHSTCIAFVEFAQAESAI 345
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFL 202
ALN G +LG P+RV PSKT + P +P +
Sbjct: 346 MALNFSGMVLGSLPIRVSPSKTPVRPRSPRVM 377
>gi|224061485|ref|XP_002300503.1| predicted protein [Populus trichocarpa]
gi|222847761|gb|EEE85308.1| predicted protein [Populus trichocarpa]
Length = 197
Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 101/138 (73%), Positives = 120/138 (86%)
Query: 102 LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFV 161
+S R AQRED+VRRTVYVSDIDQ +TEE+LA LF +CGQVVDCR+CGDP+SVL FAF+
Sbjct: 1 ISSRTSMAQREDTVRRTVYVSDIDQQVTEEQLAALFINCGQVVDCRICGDPNSVLHFAFI 60
Query: 162 EFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNI 221
EF DE GARAAL+L GTMLGYYPV+VLPSKTAI PVN TFLPR++DEREMC+RT+YCTNI
Sbjct: 61 EFTDEEGARAALSLSGTMLGYYPVKVLPSKTAIAPVNHTFLPRNDDEREMCARTIYCTNI 120
Query: 222 DKKVPQAEVKQFFEAACG 239
D+ Q+++K FFE+ CG
Sbjct: 121 DRNFTQSDIKLFFESLCG 138
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+N T+ + F S CG+V R+ GD H R AFVEF A AALN
Sbjct: 113 RTIYCTNIDRNFTQSDIKLFFESLCGEVYRLRLLGDHHHPTRIAFVEFVMAESAIAALNC 172
Query: 176 GGTMLGYYPVRVLPSKTAILPVNP 199
G ++G P+RV PSKT + P P
Sbjct: 173 SGAVIGSLPIRVSPSKTPVRPRGP 196
>gi|413941690|gb|AFW74339.1| hypothetical protein ZEAMMB73_453710 [Zea mays]
Length = 286
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 115/220 (52%), Positives = 141/220 (64%), Gaps = 26/220 (11%)
Query: 33 EFTVQKLVDMFTKLNPLAKEFFP-----------------SYYHQHTDHHFSVINNN--- 72
E ++ L D+ +KLNP+A+EF P +Y F+V +
Sbjct: 33 EREMRDLEDLLSKLNPMAEEFVPPSLASPAALTPAPLSPAAYGFYPAGAGFAVASPGHGG 92
Query: 73 ------FADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQ 126
AD + + + R+R + R AQR++ +RRTVYVSDID
Sbjct: 93 VVGFPAVADAHAARGRKKGGAGGGFSGHGHPARRRTNSRTSMAQRDEIIRRTVYVSDIDH 152
Query: 127 NITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVR 186
+TEE LA LF +CGQVVDCR+CGDP+SVLRFAF+EF DE GARAALNL GT+LGYYPVR
Sbjct: 153 QVTEENLAALFINCGQVVDCRMCGDPNSVLRFAFIEFTDEEGARAALNLSGTVLGYYPVR 212
Query: 187 VLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
VLPSKTAI PVNPTFLPRS+DEREMC+RT+YCTNIDKKVP
Sbjct: 213 VLPSKTAIAPVNPTFLPRSDDEREMCARTIYCTNIDKKVP 252
>gi|224106628|ref|XP_002333653.1| predicted protein [Populus trichocarpa]
gi|222837945|gb|EEE76310.1| predicted protein [Populus trichocarpa]
Length = 158
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 99/131 (75%), Positives = 117/131 (89%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHG 168
AQ+E+ VRRTVYVSDIDQ +TEE+LA LF +CGQVVDCR+CGDP SVLRFAF+EF DE G
Sbjct: 2 AQQEEIVRRTVYVSDIDQQVTEEQLAALFINCGQVVDCRICGDPKSVLRFAFIEFTDEEG 61
Query: 169 ARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+AAL+L GTMLGYYPV+VLPSKTAI PVNPTFLPR++DEREMC+RT+YCTNID+ + QA
Sbjct: 62 AQAALSLSGTMLGYYPVKVLPSKTAIAPVNPTFLPRNDDEREMCARTIYCTNIDRNLTQA 121
Query: 229 EVKQFFEAACG 239
+K FFE+ CG
Sbjct: 122 NIKLFFESLCG 132
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFA 164
RT+Y ++ID+N+T+ + F S CG+V R+ GD H R AFVEF
Sbjct: 107 RTIYCTNIDRNLTQANIKLFFESLCGEVYHLRLLGDHHHPTRIAFVEFV 155
>gi|224115532|ref|XP_002317057.1| predicted protein [Populus trichocarpa]
gi|222860122|gb|EEE97669.1| predicted protein [Populus trichocarpa]
Length = 195
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 99/131 (75%), Positives = 117/131 (89%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHG 168
AQ+E+ VRRTVYVSDIDQ +TEE+LA LF +CGQVVDCR+CGDP SVLRFAF+EF DE G
Sbjct: 2 AQQEEIVRRTVYVSDIDQQVTEEQLAALFINCGQVVDCRICGDPKSVLRFAFIEFTDEEG 61
Query: 169 ARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+AAL+L GTMLGYYPV+VLPSKTAI PVNPTFLPR++DEREMC+RT+YCTNID+ + QA
Sbjct: 62 AQAALSLSGTMLGYYPVKVLPSKTAIAPVNPTFLPRNDDEREMCARTIYCTNIDRNLTQA 121
Query: 229 EVKQFFEAACG 239
+K FFE+ CG
Sbjct: 122 NIKLFFESLCG 132
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+N+T+ + F S CG+V R+ GD H R AFVEF A AALN
Sbjct: 107 RTIYCTNIDRNLTQANIKLFFESLCGEVYHLRLLGDHHHPTRIAFVEFVMAESAIAALNC 166
Query: 176 GGTMLGYYPVRVLPSKTAILPVNP 199
G +LG P+RV PSKT + P P
Sbjct: 167 SGVVLGSLPIRVSPSKTPVRPRGP 190
>gi|15238531|ref|NP_197832.1| CTC-interacting domain 13 protein [Arabidopsis thaliana]
gi|9758532|dbj|BAB08927.1| RNA-binding protein-like [Arabidopsis thaliana]
gi|332005928|gb|AED93311.1| CTC-interacting domain 13 protein [Arabidopsis thaliana]
Length = 320
Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 124/263 (47%), Positives = 160/263 (60%), Gaps = 31/263 (11%)
Query: 3 AVADMPG---DAAAANNTNNNKNNNLETK---------KSESEFTVQKLVDM-------- 42
AVA+ G D++ N +NN + +ETK KS+S +L+
Sbjct: 2 AVAENVGVKVDSSNNQNIDNNTTSLVETKPSCSDDQTPKSKSSVLTNELIQRTSEVNLKS 61
Query: 43 -FTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDN---KQSA--IDNFNNNRRRRNNFN 96
+ LNP+AKEF PS+ Q HH N F N KQ+ I F RR NF
Sbjct: 62 EISHLNPMAKEFVPSFLAQ--THHSEFWGNRFWFTNHFPKQTIFLIGQFATMRR---NFG 116
Query: 97 QGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVL 156
+GR ++ + Q ED ++RTVYVSDID +TEE+LA LF SCGQVVDCR+CGD S+L
Sbjct: 117 KGRPWITKKTNLVQNEDMIKRTVYVSDIDNQVTEEQLASLFLSCGQVVDCRMCGDYKSIL 176
Query: 157 RFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTV 216
RFAF+EF D GAR+AL GTM G +P+RV SKTAI PVNP+FLP+S+DE E C +TV
Sbjct: 177 RFAFIEFTDAEGARSALRKSGTMFGSHPIRVFMSKTAIAPVNPSFLPQSKDELEKCGKTV 236
Query: 217 YCTNIDKKVPQAEVKQFFEAACG 239
YCTNIDK+V + E++ FF+ CG
Sbjct: 237 YCTNIDKEVTKMELENFFKTVCG 259
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 4/93 (4%)
Query: 106 AFRAQREDSVRR---TVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFV 161
+F Q +D + + TVY ++ID+ +T+ L F + CG+V R+ GD + R AFV
Sbjct: 220 SFLPQSKDELEKCGKTVYCTNIDKEVTKMELENFFKTVCGEVHHLRLLGDFYHQTRIAFV 279
Query: 162 EFADEHGARAALNLGGTMLGYYPVRVLPSKTAI 194
EF A +ALN G +LG P+RV PSKT +
Sbjct: 280 EFKLAESAISALNCSGVVLGELPIRVSPSKTPV 312
>gi|388522717|gb|AFK49420.1| unknown [Medicago truncatula]
Length = 188
Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 99/125 (79%), Positives = 113/125 (90%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN 174
+RRTVYVSDIDQ +TEE+LA LF +CGQVVDCRVCGDP+S+LRFAF+EF DE ARAA++
Sbjct: 2 IRRTVYVSDIDQLVTEEQLASLFLNCGQVVDCRVCGDPNSILRFAFIEFTDEESARAAVS 61
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L GTMLGYYP+RVLPSKTAI PVNPT LPRSEDEREMCSRT+YCTNIDKK+ QA+VK FF
Sbjct: 62 LSGTMLGYYPLRVLPSKTAIAPVNPTSLPRSEDEREMCSRTIYCTNIDKKLTQADVKHFF 121
Query: 235 EAACG 239
E+ CG
Sbjct: 122 ESICG 126
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 52/90 (57%), Gaps = 4/90 (4%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +T+ + F S CG+V R+ GD R AFVEFA A AAL+
Sbjct: 101 RTIYCTNIDKKLTQADVKHFFESICGEVHRLRLLGDYQHSTRIAFVEFAVAESAIAALSC 160
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRS 205
G +LG P+RV PSKT PV PRS
Sbjct: 161 SGVILGALPIRVSPSKT---PVRARSSPRS 187
>gi|297812631|ref|XP_002874199.1| ctc-interacting domain 13 [Arabidopsis lyrata subsp. lyrata]
gi|297320036|gb|EFH50458.1| ctc-interacting domain 13 [Arabidopsis lyrata subsp. lyrata]
Length = 313
Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 122/258 (47%), Positives = 159/258 (61%), Gaps = 28/258 (10%)
Query: 3 AVADMPG---DAAAANNTNNNKNNNLETK---------KSESEFTVQKL------VDMFT 44
AVA+ G D++ N +NN + ETK KS S +L VD+ +
Sbjct: 2 AVAENVGVKVDSSDDQNLDNNTTSLAETKPSCPDDQTPKSNSSVLTNELIQRTSEVDLMS 61
Query: 45 ---KLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKR 101
+LNP+AKEF PS+ Q T F F ++ AI R +F QGR+
Sbjct: 62 EISRLNPMAKEFVPSFLAQ-THSEFLRSRLWFTNNFPVQAISTM------RRSFGQGRRW 114
Query: 102 LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFV 161
++ + Q ED ++RTVYVSDIDQ +TEE+LA LF SCGQVVDCR+CGD S+LRFAF+
Sbjct: 115 INKKTNLVQNEDVIKRTVYVSDIDQQVTEEQLASLFLSCGQVVDCRICGDHKSILRFAFI 174
Query: 162 EFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNI 221
EF D GAR+AL GT+ G +P+RV SKTAI PVNP+FLPRSE+E E C +TVYCTNI
Sbjct: 175 EFTDAEGARSALRKSGTVFGSHPIRVHISKTAIAPVNPSFLPRSEEELEKCGKTVYCTNI 234
Query: 222 DKKVPQAEVKQFFEAACG 239
DK+V + E++ FF+ CG
Sbjct: 235 DKQVTKMELENFFKTVCG 252
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
+TVY ++ID+ +T+ L F + CG+V R+ GD + R AFVEF A +ALN
Sbjct: 227 KTVYCTNIDKQVTKMELENFFKTVCGEVHHLRLLGDFYHQTRIAFVEFKLAESAISALNY 286
Query: 176 GGTMLGYYPVRVLPSKTAILP 196
G +LG P+R+ PSKT + P
Sbjct: 287 SGVVLGELPIRISPSKTPVRP 307
>gi|413941689|gb|AFW74338.1| hypothetical protein ZEAMMB73_453710 [Zea mays]
Length = 182
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 90/112 (80%), Positives = 102/112 (91%)
Query: 128 ITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRV 187
+TEE LA LF +CGQVVDCR+CGDP+SVLRFAF+EF DE GARAALNL GT+LGYYPVRV
Sbjct: 8 VTEENLAALFINCGQVVDCRMCGDPNSVLRFAFIEFTDEEGARAALNLSGTVLGYYPVRV 67
Query: 188 LPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
LPSKTAI PVNPTFLPRS+DEREMC+RT+YCTNIDKKV QA++K FFE+ CG
Sbjct: 68 LPSKTAIAPVNPTFLPRSDDEREMCARTIYCTNIDKKVTQADLKLFFESICG 119
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +T+ L F S CG+V R+ GD H R AFVEF A AALN
Sbjct: 94 RTIYCTNIDKKVTQADLKLFFESICGEVFRLRLLGDYHHSTRIAFVEFVMAESATAALNC 153
Query: 176 GGTMLGYYPVRVLPSKTAILPVNP 199
G +LG P+RV PSKT + P P
Sbjct: 154 SGVILGSLPIRVSPSKTPVRPRAP 177
>gi|413916285|gb|AFW56217.1| hypothetical protein ZEAMMB73_723080 [Zea mays]
Length = 246
Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 89/113 (78%), Positives = 100/113 (88%)
Query: 127 NITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVR 186
+TEE LA LF +CGQVVDC +CGDP+SVLRF F+EF DE GARAALNL GTMLGYYPVR
Sbjct: 22 KVTEENLAALFINCGQVVDCHMCGDPNSVLRFTFIEFTDEEGARAALNLSGTMLGYYPVR 81
Query: 187 VLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
VLPSKTAI PVNPTFLPRS+DEREMC+RT+YCTNIDKKV QA++K FFE+ CG
Sbjct: 82 VLPSKTAIAPVNPTFLPRSDDEREMCARTIYCTNIDKKVTQADLKLFFESICG 134
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFA 164
RT+Y ++ID+ +T+ L F S CG+V R+ GD H R AFVEF
Sbjct: 109 RTIYCTNIDKKVTQADLKLFFESICGEVFRLRLLGDYHHSTRIAFVEFV 157
>gi|414868267|tpg|DAA46824.1| TPA: hypothetical protein ZEAMMB73_802900 [Zea mays]
Length = 328
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 86/112 (76%), Positives = 98/112 (87%)
Query: 128 ITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRV 187
+TEE LA LF +CGQVVDCR+CGDP+SVLRFAF+EF D+ GARAALNL G MLGYYPV V
Sbjct: 153 VTEENLAALFINCGQVVDCRMCGDPNSVLRFAFIEFTDDEGARAALNLSGNMLGYYPVNV 212
Query: 188 LPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
LPSKTAI PVN TFLPRS+DEREMC+RT+YCTNIDK V QA++K FFE+ CG
Sbjct: 213 LPSKTAIAPVNETFLPRSDDEREMCARTIYCTNIDKMVAQADLKLFFESICG 264
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ + + L F S CG+V R+ GD H R AFVEF A AALN
Sbjct: 239 RTIYCTNIDKMVAQADLKLFFESICGEVFRLRLLGDYHHSTRIAFVEFVMAESATAALNS 298
Query: 176 GGTMLGYYPVRVLPSKTAILPVNP 199
G +LG P+RV PSKT + P +P
Sbjct: 299 SGVVLGSLPIRVNPSKTPVRPRDP 322
>gi|413954119|gb|AFW86768.1| hypothetical protein ZEAMMB73_327506 [Zea mays]
Length = 219
Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 86/112 (76%), Positives = 99/112 (88%)
Query: 128 ITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRV 187
+TEE LA LF +CGQVVDCR+CGDP+SVLRFAF+EF DE GARAALNL GT+LGYYP+ V
Sbjct: 40 VTEENLAALFINCGQVVDCRMCGDPNSVLRFAFIEFTDEEGARAALNLSGTVLGYYPINV 99
Query: 188 LPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
L SKTAI PVN TFLPRS+DEREMC+RT+YCTNIDKKV QA++K FFE+ CG
Sbjct: 100 LLSKTAIAPVNETFLPRSDDEREMCARTIYCTNIDKKVTQADLKLFFESICG 151
>gi|413952071|gb|AFW84720.1| hypothetical protein ZEAMMB73_482719 [Zea mays]
Length = 625
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 85/122 (69%), Positives = 101/122 (82%)
Query: 126 QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPV 185
+TEE LA LF + GQVVDC +CGDP+SVL+FAF+EF DE GAR ALNL GT+L YYPV
Sbjct: 308 HQVTEENLAALFINYGQVVDCHMCGDPNSVLQFAFIEFTDEEGARVALNLSGTVLRYYPV 367
Query: 186 RVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTL 245
RVLPSKTAI PVNPTF+PRS+DEREMC+RT+YCTNIDKKV QA++K FFE+ CG ++
Sbjct: 368 RVLPSKTAIAPVNPTFVPRSDDEREMCARTIYCTNIDKKVTQADLKLFFESICGEKMTIQ 427
Query: 246 PC 247
P
Sbjct: 428 PA 429
>gi|326508995|dbj|BAJ86890.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 169
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/106 (78%), Positives = 95/106 (89%)
Query: 134 AGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTA 193
A +FS+CGQVVDCR+CGDP+SV+RFAF+EFAD+ GARAAL LGGT+LG+YPVRVLPSKTA
Sbjct: 1 AEVFSNCGQVVDCRICGDPNSVMRFAFIEFADDVGARAALALGGTVLGFYPVRVLPSKTA 60
Query: 194 ILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
ILPVNP FLPR+EDE+EM SRTVYCTNIDK VP+ VK FFE CG
Sbjct: 61 ILPVNPKFLPRTEDEKEMVSRTVYCTNIDKNVPEDVVKNFFEGICG 106
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGAR 170
++ V RTVY ++ID+N+ E+ + F CG+V R+ GD AFVEF + GA
Sbjct: 76 KEMVSRTVYCTNIDKNVPEDVVKNFFEGICGEVARLRLLGDYVHATCIAFVEFVEAEGAI 135
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNP 199
ALN G +LG PVRV PSKT + P +P
Sbjct: 136 LALNCSGMLLGSLPVRVSPSKTPVRPRSP 164
>gi|222641306|gb|EEE69438.1| hypothetical protein OsJ_28831 [Oryza sativa Japonica Group]
Length = 353
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/151 (61%), Positives = 112/151 (74%), Gaps = 3/151 (1%)
Query: 88 NRRRRNNFN-QGRKR-LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSS-CGQVV 144
+RR NF+ QGR S R RAQ+E+ VRRT++VSDID +TE+ LA LF S C VV
Sbjct: 129 SRRGSRNFSRQGRSAPFSSRVRRAQKEEFVRRTIFVSDIDHTVTEDMLAELFGSYCSVVV 188
Query: 145 DCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPR 204
DCR+CGD S LRFAF+EF DE A AAL+L G +LG P+RV PSKTAI+PVNP+FLP+
Sbjct: 189 DCRICGDHSSGLRFAFIEFQDESDAYAALDLDGYVLGICPLRVSPSKTAIMPVNPSFLPQ 248
Query: 205 SEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
SE EREMCSRT+YCTNIDK V ++K F E
Sbjct: 249 SEAEREMCSRTIYCTNIDKSVNVTDLKYFCE 279
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEH 167
A+RE RT+Y ++ID+++ L GQV ++ GD R AF+EFA+
Sbjct: 251 AERE-MCSRTIYCTNIDKSVNVTDLKYFCEEHFGQVFRLKLLGDDGHPTRIAFIEFAEVD 309
Query: 168 GARAALNLGGTMLGYYPVRVLPSKTAILPV 197
GA ALN G P+RV PSKT I V
Sbjct: 310 GAINALNSSGIFASGQPIRVCPSKTPIRSV 339
>gi|218201903|gb|EEC84330.1| hypothetical protein OsI_30837 [Oryza sativa Indica Group]
Length = 353
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/151 (61%), Positives = 112/151 (74%), Gaps = 3/151 (1%)
Query: 88 NRRRRNNFN-QGRKR-LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSS-CGQVV 144
+RR NF+ QGR S R RAQ+E+ VRRT++VSDID +TE+ LA LF S C VV
Sbjct: 129 SRRGSRNFSRQGRSAPFSSRVRRAQKEEFVRRTIFVSDIDHTVTEDMLAELFGSYCSVVV 188
Query: 145 DCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPR 204
DCR+CGD S LRFAF+EF DE A AAL+L G +LG P+RV PSKTAI+PVNP+FLP+
Sbjct: 189 DCRICGDHSSGLRFAFIEFQDESDAYAALDLDGYVLGICPLRVSPSKTAIMPVNPSFLPQ 248
Query: 205 SEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
SE EREMCSRT+YCTNIDK V ++K F E
Sbjct: 249 SEAEREMCSRTIYCTNIDKSVNVTDLKYFCE 279
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEH 167
A+RE RT+Y ++ID+++ L GQV ++ GD R AF+EFA+
Sbjct: 251 AERE-MCSRTIYCTNIDKSVNVTDLKYFCEEHFGQVFRLKLLGDDGHPTRIAFIEFAEVD 309
Query: 168 GARAALNLGGTMLGYYPVRVLPSKTAILPV 197
GA ALN G P+RV PSKT I V
Sbjct: 310 GAINALNSSGIFASGQPIRVCPSKTPIRSV 339
>gi|302830029|ref|XP_002946581.1| hypothetical protein VOLCADRAFT_56092 [Volvox carteri f.
nagariensis]
gi|300268327|gb|EFJ52508.1| hypothetical protein VOLCADRAFT_56092 [Volvox carteri f.
nagariensis]
Length = 238
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 76/128 (59%), Positives = 98/128 (76%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
E++++RTVY+S +D +TEE LA FS CG++VDCR+CGDP+S +RFAF+EFAD A
Sbjct: 12 EENIKRTVYISYVDCTLTEENLAAFFSDCGRIVDCRICGDPNSAMRFAFIEFADVEFATK 71
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
AL G++LG P+RVLPSKTAI+PVN +PRS DE E CSRTVY NIDKKV + +V+
Sbjct: 72 ALEKTGSVLGKSPLRVLPSKTAIMPVNQELMPRSPDEVERCSRTVYAANIDKKVDKNDVR 131
Query: 232 QFFEAACG 239
FFE+ CG
Sbjct: 132 AFFESLCG 139
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RTVY ++ID+ + + + F S CG+V R+ GD R AFVEF GA AALN
Sbjct: 114 RTVYAANIDKKVDKNDVRAFFESLCGKVSRIRLLGDYAHSTRIAFVEFQHAEGALAALNC 173
Query: 176 GGTMLGYYPVRVLPSKTAI 194
G +LG P+RV PSKT +
Sbjct: 174 SGALLGSLPIRVSPSKTPV 192
>gi|159464635|ref|XP_001690547.1| RNA binding protein [Chlamydomonas reinhardtii]
gi|158280047|gb|EDP05806.1| RNA binding protein [Chlamydomonas reinhardtii]
Length = 464
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/128 (59%), Positives = 98/128 (76%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
E+++RRTVY+S +D ++TEE LA FS CG+++DCR+CGDP+S +RFAF+EF D A
Sbjct: 190 EENIRRTVYISYVDCSLTEENLAAFFSDCGRILDCRICGDPNSAMRFAFIEFMDVECAAK 249
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
AL G++LG P+RVLPSKTAI+PVN +PRS DE E CSRTVY NIDKKV + +VK
Sbjct: 250 ALEKTGSVLGNSPLRVLPSKTAIMPVNQELMPRSADEVERCSRTVYAANIDKKVDKNDVK 309
Query: 232 QFFEAACG 239
FFE+ CG
Sbjct: 310 AFFESLCG 317
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RTVY ++ID+ + + + F S CG+V R+ GD R AFVEF GA AALN
Sbjct: 292 RTVYAANIDKKVDKNDVKAFFESLCGKVSRIRLLGDYAHSTRIAFVEFHHAEGALAALNC 351
Query: 176 GGTMLGYYPVRVLPSKTAI 194
G +LG P+RV PSKT +
Sbjct: 352 SGALLGSLPIRVSPSKTPV 370
>gi|414884567|tpg|DAA60581.1| TPA: hypothetical protein ZEAMMB73_957971 [Zea mays]
Length = 296
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 75/98 (76%), Positives = 85/98 (86%)
Query: 142 QVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTF 201
VVDCR+CGDP+SVLRFAF+EFADE GARAA NL T+LGYYPV VLPSKTAI PVN TF
Sbjct: 131 HVVDCRMCGDPNSVLRFAFIEFADEEGARAAPNLSRTVLGYYPVNVLPSKTAIAPVNETF 190
Query: 202 LPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
LPRS+DEREMC+ T+YCTNIDKKV QA++ FFE+ CG
Sbjct: 191 LPRSDDEREMCASTIYCTNIDKKVTQADLNLFFESICG 228
>gi|307105908|gb|EFN54155.1| hypothetical protein CHLNCDRAFT_13101, partial [Chlorella
variabilis]
Length = 187
Score = 160 bits (404), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 72/128 (56%), Positives = 95/128 (74%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
E+ VR TVY+SDI +TE +LA F CGQ+VDCRVCGDP+S +RFAF+EF E A+
Sbjct: 6 EEKVRCTVYISDISDTVTEAQLAAFFQDCGQLVDCRVCGDPNSSMRFAFIEFMQEDSAQQ 65
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
AL G MLG +P+RV PSKTAI+PVN T+LPRS +ERE+ +RTV+ NID+ V + ++
Sbjct: 66 ALGKSGAMLGDFPIRVSPSKTAIVPVNNTYLPRSTEERELVARTVFVGNIDRVVEREQLS 125
Query: 232 QFFEAACG 239
+FF+ CG
Sbjct: 126 EFFQNLCG 133
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL 173
V RTV+V +ID+ + E+L+ F + CG V R+ GD + AF+EF ARAAL
Sbjct: 106 VARTVFVGNIDRVVEREQLSEFFQNLCGPVSKIRLLGDSQHSAKIAFIEFVTAESARAAL 165
Query: 174 NLGGTMLGYYPVRVLPSKTAI 194
L G +LG P+RV PSKT +
Sbjct: 166 KLSGALLGTLPLRVSPSKTPV 186
>gi|413922754|gb|AFW62686.1| hypothetical protein ZEAMMB73_396388 [Zea mays]
Length = 279
Score = 156 bits (395), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 76/122 (62%), Positives = 87/122 (71%), Gaps = 10/122 (8%)
Query: 128 ITEERLAGLFSSCGQVVDCRVCGDPHSVLR----------FAFVEFADEHGARAALNLGG 177
+TEE L LF +CGQVVDC +CGDP+ VL + GARAALNL G
Sbjct: 90 VTEENLVALFINCGQVVDCHMCGDPNLVLSLLTLCNGSTIYGVKNIDVPEGARAALNLSG 149
Query: 178 TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAA 237
T+LGYYPV VLPSKTAI PVN TFLPRS DE EMC+RT+YCTNIDKKV QA++K FFE+
Sbjct: 150 TVLGYYPVNVLPSKTAIAPVNETFLPRSNDEHEMCARTIYCTNIDKKVTQADLKLFFESI 209
Query: 238 CG 239
CG
Sbjct: 210 CG 211
>gi|384248219|gb|EIE21704.1| hypothetical protein COCSUDRAFT_56895 [Coccomyxa subellipsoidea
C-169]
Length = 231
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 72/131 (54%), Positives = 95/131 (72%), Gaps = 1/131 (0%)
Query: 110 QREDSVRRTVYVS-DIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHG 168
QR+ RR + N+TE LA +F G++VDCRVCGDP+S +RFAF+EFADE
Sbjct: 44 QRQSRPRRKAALQKQFGGNVTEAALADVFKHSGKIVDCRVCGDPNSAMRFAFIEFADEEA 103
Query: 169 ARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
+ A+ L GTMLG +P+RV+PSKTAI+PVN +FLPR+++E E C+RTVY NIDKKV +
Sbjct: 104 IQRAIKLNGTMLGKFPIRVMPSKTAIVPVNNSFLPRTQEELERCARTVYIANIDKKVDRE 163
Query: 229 EVKQFFEAACG 239
EV+ FF+ CG
Sbjct: 164 EVRVFFQTLCG 174
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 108 RAQRE-DSVRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFAD 165
R Q E + RTVY+++ID+ + E + F + CG V R+ D + V AFVEFAD
Sbjct: 139 RTQEELERCARTVYIANIDKKVDREEVRVFFQTLCGPVTKIRLLSDYNHVSSIAFVEFAD 198
Query: 166 EHGARAALNLGGTMLGYYPVRVLPSKTAI 194
AR AL+ G +LG P+RV PSK +
Sbjct: 199 FKSARKALDCSGALLGSLPIRVTPSKAPV 227
>gi|384245723|gb|EIE19216.1| hypothetical protein COCSUDRAFT_38408 [Coccomyxa subellipsoidea
C-169]
Length = 200
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/120 (56%), Positives = 89/120 (74%)
Query: 120 YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTM 179
+ S Q +TE LA +F G++VDCRVCGDP+S +RFAF+EFADE + A+ L G
Sbjct: 24 WQSPFHQKVTEASLADVFKDSGKIVDCRVCGDPNSAMRFAFIEFADERAVQQAIKLNGAK 83
Query: 180 LGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
LG YP+RV+PSKTAI+PVN +FLPR++ E E C+RTVY NIDK+V + +V+QFFE CG
Sbjct: 84 LGKYPIRVMPSKTAIVPVNTSFLPRTQKELECCARTVYVANIDKRVDREDVRQFFETLCG 143
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
Query: 108 RAQRE-DSVRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFAD 165
R Q+E + RTVYV++ID+ + E + F + CG V R+ D + V AFVEFA
Sbjct: 108 RTQKELECCARTVYVANIDKRVDREDVRQFFETLCGPVKKIRLLSDYNKVSSIAFVEFAG 167
Query: 166 EHGARAALNLGGTMLGYYPVRVLPSKTAI 194
AR AL+ G +LG P+RV PSK +
Sbjct: 168 FDSARKALDCSGALLGMLPIRVTPSKAPV 196
>gi|413943210|gb|AFW75859.1| putative ubiquitin-conjugating enzyme family [Zea mays]
Length = 699
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/117 (59%), Positives = 80/117 (68%), Gaps = 20/117 (17%)
Query: 123 DIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGY 182
D+ +TEE LA LF +CGQVVDCR+CGDP+SVLRF F+EF DE GARAALNL GT+L Y
Sbjct: 482 DLFCQVTEENLAALFINCGQVVDCRMCGDPNSVLRFTFIEFTDEEGARAALNLSGTVLRY 541
Query: 183 YPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
YPV VLPSKT I PVNPTFLPR V QA++K FFE+ CG
Sbjct: 542 YPVSVLPSKTVIAPVNPTFLPR--------------------VTQADLKLFFESICG 578
>gi|414878000|tpg|DAA55131.1| TPA: hypothetical protein ZEAMMB73_948686 [Zea mays]
Length = 237
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 78/139 (56%), Positives = 87/139 (62%), Gaps = 29/139 (20%)
Query: 101 RLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R+S R R R +YV +TEE LA LF +CGQVVDCR+ GDP+SVLRFAF
Sbjct: 70 RMSSRCVRTCR-------LYVQG--WMVTEENLATLFINCGQVVDCRMRGDPNSVLRFAF 120
Query: 161 VEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTN 220
VEF DE GARAALNL GT LGYYPV VLPSKTAI PVN TFLPR
Sbjct: 121 VEFTDEEGARAALNLSGTELGYYPVNVLPSKTAIAPVNETFLPR---------------- 164
Query: 221 IDKKVPQAEVKQFFEAACG 239
V QA++K FFE+ CG
Sbjct: 165 ----VTQADLKLFFESICG 179
>gi|413918321|gb|AFW58253.1| hypothetical protein ZEAMMB73_482713 [Zea mays]
Length = 249
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 78/150 (52%), Positives = 89/150 (59%), Gaps = 38/150 (25%)
Query: 128 ITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRV 187
+TEE LA LF +C QVVDCR+CGDP+SVLRFAF+EF DE GARAALNL T+LGYYPV V
Sbjct: 32 VTEENLAALFINCRQVVDCRMCGDPNSVLRFAFIEFTDEEGARAALNLSRTVLGYYPVNV 91
Query: 188 LPSKTAILPVNPTFLPR-----------------SEDEREMCSRTV-------------Y 217
LPSKTAI PVN TFLPR +M S+ V
Sbjct: 92 LPSKTAIAPVNKTFLPRVCKPFGTNMLVLSSWLNVHALYDMVSKKVGRFSVLYSLTMNMK 151
Query: 218 CT--------NIDKKVPQAEVKQFFEAACG 239
C NIDKKV QA++K FFE+ CG
Sbjct: 152 CVQGLSTAQINIDKKVTQADLKLFFESICG 181
>gi|414884994|tpg|DAA61008.1| TPA: hypothetical protein ZEAMMB73_630517 [Zea mays]
Length = 295
Score = 136 bits (343), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 119/224 (53%), Gaps = 21/224 (9%)
Query: 41 DMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDN---------KQSAIDNFNNNR-- 89
++ LNP A+EF P + + S F + A+ NN
Sbjct: 13 ELAGALNPDAREFLPWWRLGGSRKQLSADAPEFTRSSLGRAVAAAAANGAVIAAPNNAGV 72
Query: 90 ---RRRNNFNQGRKRLSG-----RAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCG 141
RR+ N G+ S ++ R+Q +++V+RT++V ID N+TE+ LA LF G
Sbjct: 73 GKAARRSASNNGQHAESTMPTFFKSHRSQWDETVKRTIFVKYIDHNVTEDILACLFQLFG 132
Query: 142 QVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNP 199
VVDCR+CGDP S LRF FVE E A A+L+L G ++ P+ V S+TAI P+NP
Sbjct: 133 TVVDCRICGDPTSDDGLRFGFVELQHEDEAIASLDLDGYIISVSPLSVSRSRTAICPINP 192
Query: 200 TFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVR 243
FLP+SE E E C RT+YCTNI K V + ++ F EA G R
Sbjct: 193 KFLPQSEAEWETCLRTIYCTNISKNVTSSNLRSFCEAYFGKVCR 236
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSC-GQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
++ RT+Y ++I +N+T L + G+V R+ + AF+EF + +GA A
Sbjct: 203 ETCLRTIYCTNISKNVTSSNLRSFCEAYFGKVCRVRLLDNKERSTNIAFIEFVEVYGAIA 262
Query: 172 ALNLGGTMLGYYPVRVLPSKTAI 194
AL GG + P+R+ PSK+ I
Sbjct: 263 ALGSGGIYVDGVPIRMCPSKSPI 285
>gi|50726388|dbj|BAD33999.1| RNA-binding protein-like [Oryza sativa Japonica Group]
Length = 316
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/120 (60%), Positives = 88/120 (73%), Gaps = 3/120 (2%)
Query: 88 NRRRRNNFN-QGRKR-LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSS-CGQVV 144
+RR NF+ QGR S R RAQ+E+ VRRT++VSDID +TE+ LA LF S C VV
Sbjct: 129 SRRGSRNFSRQGRSAPFSSRVRRAQKEEFVRRTIFVSDIDHTVTEDMLAELFGSYCSVVV 188
Query: 145 DCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPR 204
DCR+CGD S LRFAF+EF DE A AAL+L G +LG P+RV PSKTAI+PVNP+FLP+
Sbjct: 189 DCRICGDHSSGLRFAFIEFQDESDAYAALDLDGYVLGICPLRVSPSKTAIMPVNPSFLPQ 248
>gi|227204205|dbj|BAH56954.1| AT4G10610 [Arabidopsis thaliana]
Length = 206
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 94/136 (69%), Gaps = 7/136 (5%)
Query: 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNN-----RR 90
+++L ++ +KLNP+AKEF P + + F+ FA +N A NF N RR
Sbjct: 66 MRELHELLSKLNPMAKEFIPPSLTKPVVNGFN--GGFFAVNNGFVAAGNFPVNEDGSFRR 123
Query: 91 RRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCG 150
+++ QG++R++ R AQRE+ +RRTVYVSDIDQ +TEE+LAGLF GQVVDCR+CG
Sbjct: 124 KKSFGQQGKRRMNPRTSLAQREEIIRRTVYVSDIDQQVTEEQLAGLFIGFGQVVDCRICG 183
Query: 151 DPHSVLRFAFVEFADE 166
DP+SVLRFAF+EF DE
Sbjct: 184 DPNSVLRFAFIEFTDE 199
>gi|414585783|tpg|DAA36354.1| TPA: hypothetical protein ZEAMMB73_057809 [Zea mays]
Length = 217
Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 65/104 (62%), Positives = 80/104 (76%), Gaps = 4/104 (3%)
Query: 158 FAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVY 217
FAF+EF+DE GAR ALNLGGT+ G+YPVRVLPSKTA+LPVNP FLPR++DE+EM RTVY
Sbjct: 60 FAFIEFSDEEGARTALNLGGTIFGFYPVRVLPSKTAMLPVNPKFLPRTDDEKEMVMRTVY 119
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVRTL---PCMIILFYFHLFI 258
TNIDK V Q +V +FFE C GE + L C IL Y+++ +
Sbjct: 120 RTNIDKMVTQLDVNKFFEELC-GERQCLYDHVCYFILCYWYIVV 162
>gi|242044320|ref|XP_002460031.1| hypothetical protein SORBIDRAFT_02g021070 [Sorghum bicolor]
gi|241923408|gb|EER96552.1| hypothetical protein SORBIDRAFT_02g021070 [Sorghum bicolor]
Length = 288
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 107/200 (53%), Gaps = 20/200 (10%)
Query: 46 LNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAI-------------DNFNNNRRRR 92
LNP A+EF P + + SV F + A +N R R
Sbjct: 16 LNPDAREFLPWWRLGGSRKQLSVDAPEFIPTSWGKAAAAAAARGVVIARPNNSGTGRAAR 75
Query: 93 NNFNQGRKRLSG------RAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDC 146
+ R+ + ++ R+Q +++V+RT++V ID +TEE LA +F G VVDC
Sbjct: 76 RPASNSRQDANSPRNAFFKSHRSQWDETVKRTIFVKYIDHTVTEETLACMFRLFGTVVDC 135
Query: 147 RVCGDPHSV-LRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRS 205
R+CG P S LRF FVE E A A+L+L G+++G V V S+TAI P+NP FLP+S
Sbjct: 136 RICGHPTSGGLRFGFVELRHEDEALASLDLDGSIIGISAVSVSRSRTAICPINPKFLPQS 195
Query: 206 EDEREMCSRTVYCTNIDKKV 225
E E E C RT+YCT+I K V
Sbjct: 196 EAEWETCLRTIYCTSISKIV 215
>gi|116789825|gb|ABK25401.1| unknown [Picea sitchensis]
Length = 124
Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 53/61 (86%), Positives = 57/61 (93%)
Query: 179 MLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAAC 238
MLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC+RT+YCTNIDKKV Q EV+ FFE+ C
Sbjct: 1 MLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCARTIYCTNIDKKVSQVEVRMFFESLC 60
Query: 239 G 239
G
Sbjct: 61 G 61
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +++ + F S CG+V R+ GD R AFVEF A ALN
Sbjct: 36 RTIYCTNIDKKVSQVEVRMFFESLCGEVSRLRLLGDHVHSTRIAFVEFVMAESAILALNC 95
Query: 176 GGTMLGYYPVRVLPSKTAILPVNP 199
G ++G P+RV PSKT + P P
Sbjct: 96 SGAIVGSLPIRVSPSKTPVRPRIP 119
>gi|413936264|gb|AFW70815.1| hypothetical protein ZEAMMB73_092717 [Zea mays]
Length = 271
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 84/129 (65%), Gaps = 8/129 (6%)
Query: 77 NKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQR-----EDSVRRTVYVSDIDQNITEE 131
N++ +F+ +N +N G++ +S +D + V+ I ++TEE
Sbjct: 46 NREEHGHHFSIKLILKNVYNAGQRGISCLGLGVSDRYLDDQDHILSLVFHLHISPHVTEE 105
Query: 132 RLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSK 191
L LF +CGQVVDCR+CGDP+SVLRFAF+EFADE GARAALNL GT+LGYYPV VLPSK
Sbjct: 106 NLTTLFINCGQVVDCRMCGDPNSVLRFAFIEFADEEGARAALNLSGTVLGYYPVNVLPSK 165
Query: 192 TAILPVNPT 200
LP++ +
Sbjct: 166 ---LPLHQS 171
>gi|388517685|gb|AFK46904.1| unknown [Lotus japonicus]
Length = 124
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 54/67 (80%), Positives = 61/67 (91%), Gaps = 1/67 (1%)
Query: 179 MLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAAC 238
MLGYYP+RVLPSKTAI PVNPTFLPRSEDEREMCSRT+YCTNIDKK+ Q++VK FFE+ C
Sbjct: 1 MLGYYPLRVLPSKTAIAPVNPTFLPRSEDEREMCSRTIYCTNIDKKLTQSDVKNFFESIC 60
Query: 239 GGEVRTL 245
GEV+ L
Sbjct: 61 -GEVQRL 66
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+Y ++ID+ +T+ + F S CG+V R+ GD + R AFVEF A AAL+
Sbjct: 36 RTIYCTNIDKKLTQSDVKNFFESICGEVQRLRLLGDHNHSTRIAFVEFKVAESAIAALSC 95
Query: 176 GGTMLGYYPVRVLPSKTAI 194
G +LG P+RV PSKT +
Sbjct: 96 SGVILGSLPIRVSPSKTPV 114
>gi|413944598|gb|AFW77247.1| hypothetical protein ZEAMMB73_128485 [Zea mays]
Length = 331
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/72 (75%), Positives = 61/72 (84%)
Query: 168 GARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQ 227
GAR ALNLGGT+ G+YPVRVLPSKTAILPVNP FLPR++DE+EM RTVY TNIDK V Q
Sbjct: 136 GARTALNLGGTIFGFYPVRVLPSKTAILPVNPKFLPRTDDEKEMVMRTVYRTNIDKMVTQ 195
Query: 228 AEVKQFFEAACG 239
+VK+FFE CG
Sbjct: 196 LDVKKFFEELCG 207
>gi|294460213|gb|ADE75689.1| unknown [Picea sitchensis]
Length = 79
Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats.
Identities = 49/61 (80%), Positives = 56/61 (91%)
Query: 179 MLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAAC 238
MLGYYPVRVLPSKTAI PVNPTFLPR+E+EREMC+RT+YCTNIDKKV Q+++K FFE C
Sbjct: 1 MLGYYPVRVLPSKTAIAPVNPTFLPRTEEEREMCARTIYCTNIDKKVSQSDLKAFFETLC 60
Query: 239 G 239
G
Sbjct: 61 G 61
>gi|357153308|ref|XP_003576409.1| PREDICTED: uncharacterized protein LOC100831764 [Brachypodium
distachyon]
Length = 294
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/226 (35%), Positives = 108/226 (47%), Gaps = 47/226 (20%)
Query: 44 TKLNPLAKEFFPSYYHQHTDHHFSVIN---NNFADDNKQSAIDNFNNNRRRRNNFNQGRK 100
+KLNPLA EF P + Q + S + + ++ + N + R
Sbjct: 25 SKLNPLAAEFVPRWLRQDGRRNSSAVAPPVSAVTPAPVVVGHPVVVSDVGKNNAVPKTRP 84
Query: 101 RLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R RR +N TE+ LA F CG VVDCR+C +P S FAF
Sbjct: 85 R-------------ARRV-------RNATEKDLADRFRQCGAVVDCRICRNPRSEFLFAF 124
Query: 161 VEF----------------------ADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVN 198
+EF +D+ A AAL+L G +G V+V PS+TAI+ VN
Sbjct: 125 IEFQYHANFEFHVKQNIKKQMLHPISDD--ASAALHLKGVTIGDRHVKVAPSRTAIMHVN 182
Query: 199 PTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRT 244
P+FL +S+ E+EMCSRTVYCTNI+K V AE+ FF+A G R
Sbjct: 183 PSFLAQSDGEKEMCSRTVYCTNIEKSVTCAELVGFFQAYFGSVSRV 228
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSC-GQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RTVY ++I++++T L G F + G V R+ GD + V AFVEFA+ AAL
Sbjct: 198 RTVYCTNIEKSVTCAELVGFFQAYFGSVSRVRLLGDDNHVTGIAFVEFAEVSADIAALRS 257
Query: 176 GGTMLGYYPVR 186
G P+R
Sbjct: 258 IGIYARGLPIR 268
>gi|414884993|tpg|DAA61007.1| TPA: hypothetical protein ZEAMMB73_630517 [Zea mays]
Length = 317
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 92/170 (54%), Gaps = 35/170 (20%)
Query: 91 RRNNFNQGRKRLSG-----RAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQ--- 142
RR+ N G+ S ++ R+Q +++V+RT++V ID N+TE+ LA LF G
Sbjct: 87 RRSASNNGQHAESTMPTFFKSHRSQWDETVKRTIFVKYIDHNVTEDILACLFQLFGTSYI 146
Query: 143 -------------------------VVDCRVCGDPHS--VLRFAFVEFADEHGARAALNL 175
VVDCR+CGDP S LRF FVE E A A+L+L
Sbjct: 147 VWDRKVNAYISTRWCIFFYITNRYTVVDCRICGDPTSDDGLRFGFVELQHEDEAIASLDL 206
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
G ++ P+ V S+TAI P+NP FLP+SE E E C RT+YCTNI K V
Sbjct: 207 DGYIISVSPLSVSRSRTAICPINPKFLPQSEAEWETCLRTIYCTNISKNV 256
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 15/82 (18%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
++ RT+Y ++I +N+ RL + AF+EF + +GA AA
Sbjct: 241 ETCLRTIYCTNISKNVCRVRLLD---------------NKERSTNIAFIEFVEVYGAIAA 285
Query: 173 LNLGGTMLGYYPVRVLPSKTAI 194
L GG + P+R+ PSK+ I
Sbjct: 286 LGSGGIYVDGVPIRMCPSKSPI 307
>gi|414876665|tpg|DAA53796.1| TPA: hypothetical protein ZEAMMB73_994570 [Zea mays]
Length = 266
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 75/117 (64%), Gaps = 16/117 (13%)
Query: 128 ITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRV 187
+TEE LA LF +CGQVV+CR+CGDP+SVLRFAF+EF DE + P
Sbjct: 93 VTEENLATLFINCGQVVECRMCGDPNSVLRFAFIEFTDEVNET-----------FLPRVC 141
Query: 188 LPSKTAILPVNP-----TFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
PS T +L ++ S+DEREMC+RT+Y TNIDKKV QA++K FFE+ CG
Sbjct: 142 KPSGTNMLVLSSWLNVHALSDMSDDEREMCARTIYYTNIDKKVTQADLKLFFESICG 198
>gi|303278248|ref|XP_003058417.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459577|gb|EEH56872.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 187
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 78/128 (60%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
E ++ V+VS++ +++E LA +F+ CG+V+DCR CGD +FAFV F H
Sbjct: 6 EPTMWHNVHVSNVSLSVSESALARVFAGCGRVLDCRTCGDCGDKKKFAFVAFETSHEVDQ 65
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
AL L G ++ +RV SKTA++PVNP LP SE + E C RTVY +NID ++K
Sbjct: 66 ALTLDGFVVDGRAIRVTRSKTAVIPVNPGLLPTSEADVERCGRTVYVSNIDPTTSDDDLK 125
Query: 232 QFFEAACG 239
+ FEA G
Sbjct: 126 RAFEANAG 133
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLF-SSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RTVYVS+ID +++ L F ++ G + R AF+EF + A +AL +
Sbjct: 108 RTVYVSNIDPTTSDDDLKRAFEANAGAIRRAHALSSSRRDARNAFIEFENASSAVSALGM 167
Query: 176 GGTMLGYYPVRVLPSKTAI 194
G ++G VRV+PSKT +
Sbjct: 168 SGRVIGARKVRVVPSKTPL 186
>gi|255079476|ref|XP_002503318.1| predicted protein [Micromonas sp. RCC299]
gi|226518584|gb|ACO64576.1| predicted protein [Micromonas sp. RCC299]
Length = 144
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/142 (39%), Positives = 80/142 (56%), Gaps = 14/142 (9%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV--------------LRFAFVEF 163
TVYV +I +E + F +CG V +CRV DPH R AFV F
Sbjct: 1 TVYVREIPAGASEADVHDHFYTCGAVRECRVSADPHPPSKTDAGAGPDTNKKTRVAFVAF 60
Query: 164 ADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDK 223
E+ R AL + G++L P++V+PS+T ++PVNP LPR+E+ERE C+RTVY +N+D
Sbjct: 61 ETENAVREALTMDGSLLLGEPIQVMPSRTEVMPVNPGLLPRTEEERERCARTVYVSNVDP 120
Query: 224 KVPQAEVKQFFEAACGGEVRTL 245
V E++ EA G++ L
Sbjct: 121 DVRSNELRSALEAIADGKIAAL 142
>gi|290985874|ref|XP_002675650.1| predicted protein [Naegleria gruberi]
gi|284089247|gb|EFC42906.1| predicted protein [Naegleria gruberi]
Length = 422
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 83/140 (59%), Gaps = 11/140 (7%)
Query: 108 RAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEH 167
+A+ +D ++RT+YV+ ID I E ++ FS CG++V+ RVCGD RFAF EF +
Sbjct: 79 KAEEDDKIKRTIYVTSIDTQILEAQVCEFFSYCGRIVNYRVCGDTQHPTRFAFFEFEQKE 138
Query: 168 GARAALNLGGTMLGYYPVRVLPSKTAILPVNP--------TFLPRSEDEREMCSRTVYCT 219
A+AA++L G LG Y +R+L S+T I P +F P D+ +RTVY
Sbjct: 139 SAQAAVSLSGQFLGRYALRILGSRTPIQPTPGAVGNGAVYSFTPAHHDQ---INRTVYVG 195
Query: 220 NIDKKVPQAEVKQFFEAACG 239
N D + + ++K+FF+A CG
Sbjct: 196 NADISLTEDDLKEFFDANCG 215
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLF-SSCGQVVDCRVCGDPHSVLRFAFVEFA 164
+F D + RTVYV + D ++TE+ L F ++CG V + GD RFAFVEF
Sbjct: 179 SFTPAHHDQINRTVYVGNADISLTEDDLKEFFDANCGPVTKVVLAGDAVHSARFAFVEFL 238
Query: 165 DEHGARAALNLGGTMLGYYPVRVLPSKTAIL 195
AL GT+LG +R+ PS+T IL
Sbjct: 239 HMESRNKALECSGTLLGNRNIRINPSRTPIL 269
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 24/106 (22%)
Query: 157 RFAFVEFADEHGARAALNLGGT-MLGYY------------PVRVLPSKTAILPVNPT--- 200
++AFVEF+ A+ A+ L GT +LG + P V + T I P +
Sbjct: 8 KYAFVEFSSSEEAKVAIELSGTEILGKHLKISLSRSPISNPTPVQSNPTQISPTDDNATK 67
Query: 201 --FLPRSE-----DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
FL SE +E + RT+Y T+ID ++ +A+V +FF + CG
Sbjct: 68 YQFLSESELKRKAEEDDKIKRTIYVTSIDTQILEAQVCEFF-SYCG 112
>gi|413954118|gb|AFW86767.1| hypothetical protein ZEAMMB73_327506, partial [Zea mays]
Length = 81
Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats.
Identities = 48/58 (82%), Positives = 53/58 (91%)
Query: 168 GARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
GARAALNL GT+LGYYP+ VL SKTAI PVN TFLPRS+DEREMC+RT+YCTNIDKKV
Sbjct: 15 GARAALNLSGTVLGYYPINVLLSKTAIAPVNETFLPRSDDEREMCARTIYCTNIDKKV 72
>gi|145353373|ref|XP_001420989.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|145357398|ref|XP_001422906.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581225|gb|ABO99282.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144583150|gb|ABP01265.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 183
Score = 103 bits (256), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 77/129 (59%), Gaps = 1/129 (0%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGAR 170
E +V TV+V D+ +++E LA +F+SCG+++DCR+CGD ++ +AFV F
Sbjct: 1 EKAVPYTVFVKDVPASVSERELADVFASCGRIIDCRMCGDANTHKFSYAFVAFECAEAVD 60
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEV 230
AL L T L + V S TA++PVNP LP++E E E C+RT+Y N+DK V +
Sbjct: 61 RALLLDKTPLHGKNIMVKKSDTAVIPVNPLLLPQNEREVESCARTIYVANVDKTVDSHAL 120
Query: 231 KQFFEAACG 239
K FE G
Sbjct: 121 KLLFEDRAG 129
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 110 QRE-DSVRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEH 167
+RE +S RT+YV+++D+ + L LF G V + ++V AFVEF D
Sbjct: 96 EREVESCARTIYVANVDKTVDSHALKLLFEDRAGPVNRLHLQVKNNAVANVAFVEFVDLE 155
Query: 168 GARAALNLGGTMLGYYPVRVLPSKTAI 194
AL+L G LG +RV SKT +
Sbjct: 156 SVGTALHLTGEQLGNRMIRVSASKTPL 182
>gi|413921446|gb|AFW61378.1| hypothetical protein ZEAMMB73_448284 [Zea mays]
Length = 206
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 86/170 (50%), Gaps = 35/170 (20%)
Query: 32 SEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTD------------------HHFSVINNNF 73
E ++ L D+ +KLNP+A+EF P + F +N F
Sbjct: 36 GEREMRDLEDLLSKLNPMAEEFVPPSLASPISGAGAGHGALTPAPLSPAAYGFYPVNAGF 95
Query: 74 ADDNKQ-------SAIDNFNNNRRRRNNFNQGRKR----------LSGRAFRAQREDSVR 116
A + A+ + + R + + G + R AQR++++R
Sbjct: 96 AVASPGHRGVVSFPAVADAHAGRGMKKDGAGGFGGHGHGHPGRRRTNSRTSMAQRDEAIR 155
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADE 166
RTVYVSDID +TEE LA LF +CGQVVDCR+CGDP+SVLRFAF+EF DE
Sbjct: 156 RTVYVSDIDHQVTEENLAALFINCGQVVDCRMCGDPNSVLRFAFIEFTDE 205
>gi|308810827|ref|XP_003082722.1| FOG: RRM domain (ISS) [Ostreococcus tauri]
gi|116061191|emb|CAL56579.1| FOG: RRM domain (ISS) [Ostreococcus tauri]
Length = 650
Score = 97.1 bits (240), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 88/163 (53%), Gaps = 6/163 (3%)
Query: 83 DNFNNNRRRRNNFNQGRKRLS--GRAFRAQREDSVR---RTVYVSDIDQNITEERLAGLF 137
+N +N RR N+ G R + GR + R TV+V +I +++E LA F
Sbjct: 156 NNMDNQWRRANSDGSGGGRHTYHGRHSVSDERAGGRGSPNTVFVKEIPASVSERELAETF 215
Query: 138 SSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILP 196
++CG++VDCR+C D +S +AFV F + AL+L L + V S TA++P
Sbjct: 216 AACGRIVDCRMCRDANSNKFSYAFVAFETADEVQNALSLDKMSLHGKNIVVRRSDTAVIP 275
Query: 197 VNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
VNP LP++E E E +RT+Y N+DK V +K FFE G
Sbjct: 276 VNPLLLPQNEAELESTARTIYVANVDKSVDSDALKTFFERHAG 318
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 70/148 (47%), Gaps = 27/148 (18%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGG- 177
VY+S+I +N++ L +FS CG+V + + +P S +AFVEF D A+ ALN G
Sbjct: 403 VYISNIPKNLSPGTLRAMFSECGRVTNVELLNNPKSKFPYAFVEFDDAESAKRALNFRGR 462
Query: 178 --------TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
L Y R + A+ PV S D+ E RTV+ T+ID + +
Sbjct: 463 EVQGCAINIELTYNKKRRGAPRLALDPV-------SVDKME---RTVFVTDIDPDLEPSF 512
Query: 230 VKQFFEAACGGEVRTLPCMIILFYFHLF 257
V+ FE CG + LF++ F
Sbjct: 513 VRSKFEDECG--------PVTLFWYKAF 532
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 7/123 (5%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
+S RT+YV+++D+++ + L F G V + + AFVEF + A +
Sbjct: 289 ESTARTIYVANVDKSVDSDALKTFFERHAGAVNRLHLQVKNAADANVAFVEFVNLESAAS 348
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
+L L G LG VRV SKT P + R E+ S TN D P A K
Sbjct: 349 SLRLTGKQLGQRVVRVSASKT------PLRVNRRMSEQRAMSYYASGTNGDAATPPAPTK 402
Query: 232 QFF 234
+
Sbjct: 403 VYI 405
>gi|440801206|gb|ELR22227.1| RNAbinding protein, putative [Acanthamoeba castellanii str. Neff]
Length = 533
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 72/151 (47%), Gaps = 34/151 (22%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARA 171
D V TVYV+ +D + EE + LFS CG V + R+CG+ + RFAFVEF+ A
Sbjct: 159 DRVACTVYVTGVDTQLREEHVIQLFSLCGTVTNIRMCGETENKATRFAFVEFSTRESALM 218
Query: 172 ALNLGGTMLGYYPVRVLPSKTAI--------------------------LPVNPTFLPRS 205
A+ L +LG P++V+PSKTAI +PT+
Sbjct: 219 AMGLTNIVLGNAPIKVMPSKTAIQAGSRGGGGGPGGGGGPRPPHHAHAAAAFDPTY---- 274
Query: 206 EDEREMCSRTVYCTNIDKKVPQAEVKQFFEA 236
+E SRT+Y +D + +AE+ Q F
Sbjct: 275 ---QERASRTLYVGGVDSNLSEAELLQMFSG 302
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 45/79 (56%)
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
+RTVYV I N+ E L FS+C ++ R+ GDP RF F+EFA GA+ A N+
Sbjct: 13 QRTVYVGCIPSNLNSETLGHFFSTCDTIIQIRLAGDPSYSTRFGFIEFATPEGAQRACNM 72
Query: 176 GGTMLGYYPVRVLPSKTAI 194
G L +R+ SKTAI
Sbjct: 73 NGVELDGKKLRITLSKTAI 91
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGA 169
++ RT+YV +D N++E L +FS G V + GD H RFAFVEF+ A
Sbjct: 275 QERASRTLYVGGVDSNLSEAELLQMFSGFGTVTKLAMAGDTTVHQA-RFAFVEFSTVAEA 333
Query: 170 RAALNLGGTMLGYYPVRVLPSKTAI 194
AL + GT++G P+RV SKT I
Sbjct: 334 HMALAMNGTVVGERPIRVSQSKTPI 358
>gi|440795967|gb|ELR17076.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 347
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 58/98 (59%), Gaps = 4/98 (4%)
Query: 102 LSGRAFRAQ----REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR 157
LSG AQ ++D + RT+YV +++ IT E+L F+ CG + CR+ GD R
Sbjct: 157 LSGSPANAQSYHEKQDEIARTIYVGNVNSTITSEQLMQFFAICGPITFCRLAGDESHPSR 216
Query: 158 FAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAIL 195
FAF+EFA + A+AA+ L GTML V+V SK I+
Sbjct: 217 FAFIEFATKEAAQAAMMLNGTMLLDRAVKVNHSKNPIV 254
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 65/163 (39%), Gaps = 42/163 (25%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGG 177
TV V++I TE+ L F++CG +V + GD + ++AFV F A AAL L
Sbjct: 39 TVIVTNISPLATEQDLRDFFANCGNIVQINLLGDGLGISQYAFVRFETMAQANAALTLST 98
Query: 178 TMLGYYPVRV-----------------------------------------LPSKTAILP 196
+ PV++ +P A+L
Sbjct: 99 GAVAGMPVKIVMAASDIPVGGAAAAATAALPTPLALTPGVGAASGLGLLGAIPHSLALLS 158
Query: 197 VNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
+P ++++ +RT+Y N++ + ++ QFF A CG
Sbjct: 159 GSPANAQSYHEKQDEIARTIYVGNVNSTITSEQLMQFF-AICG 200
>gi|290997908|ref|XP_002681523.1| predicted protein [Naegleria gruberi]
gi|284095147|gb|EFC48779.1| predicted protein [Naegleria gruberi]
Length = 408
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 69/133 (51%), Gaps = 11/133 (8%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV--------LRFAFVEFADEHG 168
RT+++S ID + +E+ L FS G + + R+C + +FAF+E+A
Sbjct: 205 RTIHISGIDSSFSEDELLDYFSVYGDITNYRLCNNDQQSSNSNTQLQTKFAFIEYATTEQ 264
Query: 169 ARAALNLGGTMLGYYPVRVLPSKTAI-LPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQ 227
+ A+ + G++ G ++V SKTAI P + + + R++ RT++ ID K+ Q
Sbjct: 265 SLKAIMVNGSLWGKSKLKVSHSKTAIQTPPKKSLIDK--QYRDLVERTIHVGGIDVKLSQ 322
Query: 228 AEVKQFFEAACGG 240
VK FFE CG
Sbjct: 323 DHVKAFFEELCGA 335
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLG 176
RT+++ +I T E L LFS GQV + ++ GDP RFAFVEF D H A+ +L+L
Sbjct: 33 RTIHIGNISSYTTVESLQLLFSKYGQVTNIKLAGDPSYAKRFAFVEFVDHHQAKLSLSLD 92
Query: 177 GT 178
GT
Sbjct: 93 GT 94
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSV-LRFAFVEFADEH 167
Q D V RT++V ID ++++ + F CG + + GD S RF F+EF D+
Sbjct: 302 QYRDLVERTIHVGGIDVKLSQDHVKAFFEELCGAIHRIAMAGDTESYETRFCFIEFEDKQ 361
Query: 168 GARAALNLGG-TMLGYYP-VRVLPSKTAI 194
AL L G T+ G ++V PSK+ I
Sbjct: 362 STLRALRLSGCTIAGSVKQIKVSPSKSPI 390
>gi|413926011|gb|AFW65943.1| hypothetical protein ZEAMMB73_108884 [Zea mays]
Length = 92
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFS-SCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL 173
V RTVY ++ID+ +TEE + G F +CG+V R+ D AFVEFA A AL
Sbjct: 2 VSRTVYCTNIDKKVTEEDVKGFFQQACGKVSRLRLLTDIVHSTCIAFVEFAQAESAIMAL 61
Query: 174 NLGGTMLGYYPVRVLPSKTAILPVNPTFL 202
N G +LG P+RV PSKT + P +P +
Sbjct: 62 NFSGMVLGSLPIRVSPSKTPVRPRSPRVM 90
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 24/29 (82%)
Query: 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
M SRTVYCTNIDKKV + +VK FF+ ACG
Sbjct: 1 MVSRTVYCTNIDKKVTEEDVKGFFQQACG 29
>gi|156392403|ref|XP_001636038.1| predicted protein [Nematostella vectensis]
gi|156223137|gb|EDO43975.1| predicted protein [Nematostella vectensis]
Length = 686
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 4/104 (3%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHG 168
A + + +RRTV+V+++D IT E L FSSCG + R+ GD R+A++EFA+
Sbjct: 153 ANKVEEIRRTVFVNNLDPEITAEMLLSFFSSCGDIKYIRMGGDDGKPTRYAYIEFAETQA 212
Query: 169 ARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+AL G + G P++V SK A+ P P+ D + C
Sbjct: 213 IVSALQYSGAIFGGKPIKVTHSKNAV--SKPP--PKHSDRKRAC 252
>gi|340385705|ref|XP_003391349.1| PREDICTED: hypothetical protein LOC100639209, partial [Amphimedon
queenslandica]
Length = 358
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
D +RRT+YV ++ + +++ F +CG++ R+ GD RFAFVEFA+ + A
Sbjct: 39 DEIRRTIYVGNLSSTLHADQVMNFFQTCGEIKYVRMAGDETQPTRFAFVEFANPESVQVA 98
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL 195
L G M G P++V SK AI+
Sbjct: 99 LQYNGAMFGDRPIKVNHSKNAIV 121
>gi|291242201|ref|XP_002740997.1| PREDICTED: splicing factor, arginine/serine-rich 12-like
[Saccoglossus kowalevskii]
Length = 574
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
+ +RRT+YV ++D Q +T E+L FS G+V R+ GD RFAFVEF+D++ A
Sbjct: 166 EEIRRTIYVGNLDSQTVTAEQLLNFFSQVGEVKYVRMAGDETQPTRFAFVEFSDQNSVAA 225
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 226 ALTYNGVMFGGRPLKINHSNNAIV 249
>gi|238008810|gb|ACR35440.1| unknown [Zea mays]
Length = 92
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL 173
V RTVY ++ID+ +T+ + F CG+V R+ GD R AFVEF GA AL
Sbjct: 2 VMRTVYCTNIDKMVTQLDVKKFFEELCGEVSRLRLLGDNVHSTRIAFVEFVHAEGAIMAL 61
Query: 174 NLGGTMLGYYPVRVLPSKTAILP 196
N G +LG PVRV PSKT + P
Sbjct: 62 NCSGMILGTLPVRVSPSKTPVKP 84
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 22/29 (75%)
Query: 211 MCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
M RTVYCTNIDK V Q +VK+FFE CG
Sbjct: 1 MVMRTVYCTNIDKMVTQLDVKKFFEELCG 29
>gi|328769388|gb|EGF79432.1| hypothetical protein BATDEDRAFT_35374 [Batrachochytrium
dendrobatidis JAM81]
Length = 555
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 50/83 (60%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
+DSV RT+Y +I ++++ ++ LFSSCG V ++ GD R+AF+EFA A
Sbjct: 138 QDSVDRTIYTGNIHSGLSQQEVSMLFSSCGDVTQVKMAGDATHSTRYAFIEFATSESAAM 197
Query: 172 ALNLGGTMLGYYPVRVLPSKTAI 194
ALNL G M+ ++V SK +I
Sbjct: 198 ALNLHGMMVAGRAIKVNRSKHSI 220
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 33/148 (22%)
Query: 123 DIDQNITEERLAGLFSSCGQVVDCRV--CGDPHSVLRFAFVEFADEHGARAALNLGGTML 180
++ + ITEE L FS G +V + C + + +++ + V+F D A AL+L GT+L
Sbjct: 22 NLSKQITEELLCQFFSFIGPIVSISLQPC-EANPLVQESLVQFQDSEDAALALHLTGTVL 80
Query: 181 GYYPVRVLPSKTAIL-----------PVNP--------------TFLPRSEDE----REM 211
+ + P I P NP T +P + ++
Sbjct: 81 ADKALFITPPSAKIQSFNSHGYLNIPPPNPTAPGVLVPGSMAGSTIVPYGQTATIAGQDS 140
Query: 212 CSRTVYCTNIDKKVPQAEVKQFFEAACG 239
RT+Y NI + Q EV F ++CG
Sbjct: 141 VDRTIYTGNIHSGLSQQEVSMLF-SSCG 167
>gi|340383093|ref|XP_003390052.1| PREDICTED: hypothetical protein LOC100637518 [Amphimedon
queenslandica]
Length = 428
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
D +RRT+YV ++ + +++ F +CG++ R+ GD RFAFVEFA+ + A
Sbjct: 107 DEIRRTIYVGNLSSTLHADQVMNFFQTCGEIKYVRMAGDETQPTRFAFVEFANPESVQVA 166
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL 195
L G M G P++V SK AI+
Sbjct: 167 LQYNGAMFGDRPIKVNHSKNAIV 189
>gi|340382751|ref|XP_003389881.1| PREDICTED: hypothetical protein LOC100632051 [Amphimedon
queenslandica]
Length = 475
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 48/83 (57%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
D +RRT+YV ++ + +++ F +CG++ R+ GD RFAFVEFA+ + A
Sbjct: 172 DEIRRTIYVGNLSSTLHADQVMNFFLTCGEIKYVRMAGDEMQPTRFAFVEFANPESVQVA 231
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL 195
L G M G P++V SK AI+
Sbjct: 232 LQYNGAMFGDRPIKVNHSKNAIV 254
>gi|428166786|gb|EKX35755.1| hypothetical protein GUITHDRAFT_118030 [Guillardia theta CCMP2712]
Length = 254
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 13/95 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGD-PHSVLRF-----AFVEFADEHGAR 170
T+YV +++ +IT E+L FS+ CGQV+ R+ GD P + RF AFV+F + A
Sbjct: 21 TIYVGNLNPSITAEQLNQFFSAVCGQVLHVRMAGDDPATAFRFDRTRFAFVQFLSKEQAD 80
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRS 205
A+ L GT+LG P++ P+K NP PRS
Sbjct: 81 IAMTLSGTILGGLPIKCGPAK------NPIVQPRS 109
>gi|126317239|ref|XP_001381458.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like
[Monodelphis domestica]
Length = 613
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
>gi|26336164|dbj|BAC31767.1| unnamed protein product [Mus musculus]
Length = 317
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 42 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 101
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 102 ALAFNGVMFGDRPLKINHSNNAIV 125
>gi|395510384|ref|XP_003759457.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
[Sarcophilus harrisii]
Length = 596
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 161 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 220
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 221 ALAFNGVMFGDRPLKINHSNNAIV 244
>gi|114599978|ref|XP_001162417.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 3 [Pan troglodytes]
Length = 510
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 62 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 121
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 122 ALAFNGVMFGDRPLKINHSNNAIV 145
>gi|426384530|ref|XP_004058815.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 2 [Gorilla gorilla gorilla]
gi|426384532|ref|XP_004058816.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 3 [Gorilla gorilla gorilla]
Length = 510
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 62 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 121
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 122 ALAFNGVMFGDRPLKINHSNNAIV 145
>gi|21040255|ref|NP_631907.1| splicing regulatory glutamine/lysine-rich protein 1 isoform b [Homo
sapiens]
gi|37537968|sp|Q8WXA9.1|SREK1_HUMAN RecName: Full=Splicing regulatory glutamine/lysine-rich protein 1;
AltName: Full=Serine/arginine-rich-splicing regulatory
protein 86; Short=SRrp86; AltName: Full=Splicing factor,
arginine/serine-rich 12; AltName: Full=Splicing
regulatory protein 508; Short=SRrp508
gi|18307966|gb|AAL67778.1|AF459094_1 splicing factor, arginine/serine-rich 12 [Homo sapiens]
gi|85662678|gb|AAI12344.1| SFRS12 protein [Homo sapiens]
gi|119571715|gb|EAW51330.1| splicing factor, arginine/serine-rich 12, isoform CRA_c [Homo
sapiens]
gi|127801393|gb|AAH67770.1| Splicing factor, arginine/serine-rich 12 [Homo sapiens]
Length = 508
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 62 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 121
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 122 ALAFNGVMFGDRPLKINHSNNAIV 145
>gi|332233720|ref|XP_003266051.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 2 [Nomascus leucogenys]
gi|441658625|ref|XP_004091273.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
[Nomascus leucogenys]
Length = 510
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 62 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 121
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 122 ALAFNGVMFGDRPLKINHSNNAIV 145
>gi|441658628|ref|XP_004091274.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
[Nomascus leucogenys]
Length = 509
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 62 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 121
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 122 ALAFNGVMFGDRPLKINHSNNAIV 145
>gi|432104582|gb|ELK31194.1| Splicing regulatory glutamine/lysine-rich protein 1 [Myotis
davidii]
Length = 614
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 141 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 200
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 201 ALAFNGVMFGDRPLKINHSNNAIV 224
>gi|338718814|ref|XP_003363893.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 2 [Equus caballus]
Length = 512
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 62 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 121
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 122 ALAFNGVMFGDRPLKINHSNNAIV 145
>gi|403267427|ref|XP_003925834.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
[Saimiri boliviensis boliviensis]
Length = 630
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
>gi|426384534|ref|XP_004058817.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 4 [Gorilla gorilla gorilla]
Length = 509
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 62 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 121
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 122 ALAFNGVMFGDRPLKINHSNNAIV 145
>gi|426246381|ref|XP_004016973.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 2 [Ovis aries]
gi|426246383|ref|XP_004016974.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 3 [Ovis aries]
Length = 516
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 62 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 121
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 122 ALAFNGVMFGDRPLKINHSNNAIV 145
>gi|395455051|ref|NP_001257421.1| splicing regulatory glutamine/lysine-rich protein 1 isoform c [Homo
sapiens]
Length = 507
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 62 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 121
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 122 ALAFNGVMFGDRPLKINHSNNAIV 145
>gi|395825410|ref|XP_003785928.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
[Otolemur garnettii]
Length = 617
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
>gi|426384528|ref|XP_004058814.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 1 [Gorilla gorilla gorilla]
Length = 626
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
>gi|26333193|dbj|BAC30314.1| unnamed protein product [Mus musculus]
Length = 318
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 65 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 124
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 125 ALAFNGVMFGDRPLKINHSNNAIV 148
>gi|410948711|ref|XP_003981074.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 2 [Felis catus]
Length = 510
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 62 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 121
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 122 ALAFNGVMFGDRPLKINHSNNAIV 145
>gi|397470471|ref|XP_003806845.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like
[Pan paniscus]
Length = 626
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
>gi|344272595|ref|XP_003408117.1| PREDICTED: LOW QUALITY PROTEIN: splicing regulatory
glutamine/lysine-rich protein 1-like [Loxodonta
africana]
Length = 630
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
>gi|116089325|ref|NP_001070667.1| splicing regulatory glutamine/lysine-rich protein 1 isoform a [Homo
sapiens]
gi|119571714|gb|EAW51329.1| splicing factor, arginine/serine-rich 12, isoform CRA_b [Homo
sapiens]
Length = 624
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
>gi|67968786|dbj|BAE00750.1| unnamed protein product [Macaca fascicularis]
Length = 510
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 62 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 121
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 122 ALAFNGVMFGDRPLKINHSNNAIV 145
>gi|260821314|ref|XP_002605978.1| hypothetical protein BRAFLDRAFT_126567 [Branchiostoma floridae]
gi|229291315|gb|EEN61988.1| hypothetical protein BRAFLDRAFT_126567 [Branchiostoma floridae]
Length = 645
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDIDQ-NITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV ++D +T E+L F G+V R+ GD RFAFVEFAD+
Sbjct: 204 DEIRRTVYVGNLDSATVTAEQLLNFFQQVGEVKYVRMAGDETQPTRFAFVEFADQTSVAK 263
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 264 ALQYNGIMFGNRPLKINHSNNAIV 287
>gi|410948713|ref|XP_003981075.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 3 [Felis catus]
Length = 509
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 62 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 121
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 122 ALAFNGVMFGDRPLKINHSNNAIV 145
>gi|332233718|ref|XP_003266050.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 1 [Nomascus leucogenys]
Length = 626
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
>gi|296194448|ref|XP_002744950.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like
[Callithrix jacchus]
Length = 630
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
>gi|410300176|gb|JAA28688.1| splicing regulatory glutamine/lysine-rich protein 1 [Pan
troglodytes]
Length = 626
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
>gi|119571716|gb|EAW51331.1| splicing factor, arginine/serine-rich 12, isoform CRA_d [Homo
sapiens]
Length = 623
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
>gi|402871715|ref|XP_003899799.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
[Papio anubis]
gi|387541364|gb|AFJ71309.1| splicing regulatory glutamine/lysine-rich protein 1 isoform a
[Macaca mulatta]
Length = 626
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
>gi|440908499|gb|ELR58509.1| Splicing factor, arginine/serine-rich 12, partial [Bos grunniens
mutus]
Length = 534
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 80 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 139
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 140 ALAFNGVMFGDRPLKINHSNNAIV 163
>gi|449278700|gb|EMC86491.1| Splicing factor, arginine/serine-rich 12 [Columba livia]
Length = 517
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 62 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 121
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRS 205
AL G M G P+++ S AI+ P P++
Sbjct: 122 ALAFNGVMFGDRPLKINHSNNAIVKP-PEMTPQA 154
>gi|431907792|gb|ELK11399.1| Splicing factor, arginine/serine-rich 12 [Pteropus alecto]
Length = 630
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
>gi|74140797|dbj|BAC29709.2| unnamed protein product [Mus musculus]
Length = 401
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 65 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 124
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 125 ALAFNGVMFGDRPLKINHSNNAIV 148
>gi|345794152|ref|XP_544361.3| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 1 [Canis lupus familiaris]
Length = 626
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
>gi|355691354|gb|EHH26539.1| Serine/arginine-rich-splicing regulatory protein 86 [Macaca
mulatta]
gi|355749961|gb|EHH54299.1| Serine/arginine-rich-splicing regulatory protein 86 [Macaca
fascicularis]
Length = 620
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 205 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 264
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 265 ALAFNGVMFGDRPLKINHSNNAIV 288
>gi|301767860|ref|XP_002919343.1| PREDICTED: hypothetical protein LOC100466086 [Ailuropoda
melanoleuca]
gi|281341776|gb|EFB17360.1| hypothetical protein PANDA_007970 [Ailuropoda melanoleuca]
Length = 628
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
>gi|426246385|ref|XP_004016975.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 4 [Ovis aries]
Length = 515
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 62 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 121
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 122 ALAFNGVMFGDRPLKINHSNNAIV 145
>gi|348553835|ref|XP_003462731.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like
[Cavia porcellus]
Length = 556
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
>gi|329663695|ref|NP_001193066.1| splicing regulatory glutamine/lysine-rich protein 1 [Bos taurus]
Length = 632
Score = 63.5 bits (153), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
>gi|351713063|gb|EHB15982.1| Splicing factor, arginine/serine-rich 12 [Heterocephalus glaber]
Length = 535
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
>gi|410948709|ref|XP_003981073.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 1 [Felis catus]
Length = 626
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
>gi|194223833|ref|XP_001492097.2| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 1 [Equus caballus]
Length = 628
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
>gi|39645085|gb|AAH63761.1| Sfrs12 protein, partial [Mus musculus]
Length = 407
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 65 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 124
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 125 ALAFNGVMFGDRPLKINHSNNAIV 148
>gi|224132620|ref|XP_002321367.1| predicted protein [Populus trichocarpa]
gi|222868363|gb|EEF05494.1| predicted protein [Populus trichocarpa]
Length = 74
Score = 63.5 bits (153), Expect = 9e-08, Method: Composition-based stats.
Identities = 26/35 (74%), Positives = 32/35 (91%)
Query: 205 SEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
SEDERE+C+RT+YCTNIDKK+ QA+VK FFE+ CG
Sbjct: 2 SEDEREICARTIYCTNIDKKITQADVKLFFESFCG 36
Score = 45.1 bits (105), Expect = 0.034, Method: Composition-based stats.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 117 RTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPHSVLRFAFVEFA 164
RT+Y ++ID+ IT+ + F S CG+V R+ GD H R AFVEFA
Sbjct: 11 RTIYCTNIDKKITQADVKLFFESFCGEVHRLRLLGDYHHSTRIAFVEFA 59
>gi|444510679|gb|ELV09695.1| Splicing regulatory glutamine/lysine-rich protein 1 [Tupaia
chinensis]
Length = 592
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 143 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 202
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 203 ALAFNGVMFGDRPLKINHSNNAIV 226
>gi|426246379|ref|XP_004016972.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
isoform 1 [Ovis aries]
Length = 632
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
>gi|354474059|ref|XP_003499249.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like
[Cricetulus griseus]
gi|344246968|gb|EGW03072.1| Splicing factor, arginine/serine-rich 12 [Cricetulus griseus]
Length = 611
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 181 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 240
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 241 ALAFNGVMFGDRPLKINHSNNAIV 264
>gi|50949479|emb|CAH10414.1| hypothetical protein [Homo sapiens]
Length = 331
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 62 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 121
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 122 ALAFNGVMFGDRPLKINHSNNAIV 145
>gi|291395458|ref|XP_002714054.1| PREDICTED: splicing factor, arginine/serine-rich 12 [Oryctolagus
cuniculus]
Length = 618
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
>gi|449514352|ref|XP_004177208.1| PREDICTED: LOW QUALITY PROTEIN: splicing regulatory
glutamine/lysine-rich protein 1 [Taeniopygia guttata]
Length = 633
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
>gi|193787205|dbj|BAG52411.1| unnamed protein product [Homo sapiens]
Length = 514
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
>gi|74217177|dbj|BAC34905.2| unnamed protein product [Mus musculus]
Length = 513
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 181 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 240
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 241 ALAFNGVMFGDRPLKINHSNNAIV 264
>gi|297294417|ref|XP_001087835.2| PREDICTED: hypothetical protein LOC697731 isoform 1 [Macaca
mulatta]
Length = 516
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
>gi|9910564|ref|NP_064477.1| splicing regulatory glutamine/lysine-rich protein 1 [Rattus
norvegicus]
gi|37537914|sp|Q9JKL7.1|SREK1_RAT RecName: Full=Splicing regulatory glutamine/lysine-rich protein 1;
AltName: Full=SR-related protein of 86 kDa; AltName:
Full=Serine/arginine-rich-splicing regulatory protein
86; Short=SRrp86; AltName: Full=Splicing factor,
arginine/serine-rich 12
gi|7158880|gb|AAF37578.1|AF234765_1 serine-arginine-rich splicing regulatory protein SRRP86 [Rattus
norvegicus]
Length = 494
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 65 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 124
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 125 ALAFNGVMFGDRPLKINHSNNAIV 148
>gi|149059243|gb|EDM10250.1| splicing factor, arginine/serine-rich 12, isoform CRA_a [Rattus
norvegicus]
Length = 610
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 181 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 240
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 241 ALAFNGVMFGDRPLKINHSNNAIV 264
>gi|149059244|gb|EDM10251.1| splicing factor, arginine/serine-rich 12, isoform CRA_b [Rattus
norvegicus]
Length = 494
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 65 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 124
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 125 ALAFNGVMFGDRPLKINHSNNAIV 148
>gi|350594366|ref|XP_003134051.3| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1,
partial [Sus scrofa]
Length = 587
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 216 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 275
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 276 ALAFNGVMFGDRPLKINHSNNAIV 299
>gi|363744206|ref|XP_424756.3| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1
[Gallus gallus]
Length = 621
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
>gi|27369842|ref|NP_766180.1| splicing regulatory glutamine/lysine-rich protein 1 [Mus musculus]
gi|37537951|sp|Q8BZX4.1|SREK1_MOUSE RecName: Full=Splicing regulatory glutamine/lysine-rich protein 1;
AltName: Full=Serine/arginine-rich-splicing regulatory
protein 86; Short=SRrp86; AltName: Full=Splicing factor,
arginine/serine-rich 12
gi|26329009|dbj|BAC28243.1| unnamed protein product [Mus musculus]
gi|47682645|gb|AAH70460.1| Splicing factor, arginine/serine-rich 12 [Mus musculus]
Length = 494
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 65 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 124
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 125 ALAFNGVMFGDRPLKINHSNNAIV 148
>gi|28703790|gb|AAH47322.1| Similar to expressed sequence AI450757, partial [Homo sapiens]
Length = 386
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
>gi|301609359|ref|XP_002934235.1| PREDICTED: hypothetical protein LOC100329115 [Xenopus (Silurana)
tropicalis]
Length = 566
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRT+YV +++ Q T E+L F G V R+ GD RFAFVEF+D++
Sbjct: 198 DEIRRTIYVGNLNSQTTTAEQLLEFFKQVGDVRFVRMAGDETQPTRFAFVEFSDQNSVTR 257
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 258 ALTFNGVMFGDRPLKINHSNNAIV 281
>gi|193704514|ref|XP_001944340.1| PREDICTED: hypothetical protein LOC100161931 [Acyrthosiphon pisum]
Length = 673
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%)
Query: 107 FRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADE 166
+ ++R + +RRT+ ++D+N+T++ L G F G V R C + + R+A VE++++
Sbjct: 165 YDSRRIEEIRRTLAAINVDENVTDDELIGFFQKAGDVKYVRWCSRENDITRYALVEYSEQ 224
Query: 167 HGARAALNLGGTMLGYYPVRVLPSKTAI 194
A L L G LG PV+V + AI
Sbjct: 225 ASVIAGLKLNGVQLGSRPVQVTHATQAI 252
>gi|380792715|gb|AFE68233.1| splicing regulatory glutamine/lysine-rich protein 1 isoform a,
partial [Macaca mulatta]
Length = 394
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 178 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 237
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 238 ALAFNGVMFGDRPLKINHSNNAIV 261
>gi|198429455|ref|XP_002129672.1| PREDICTED: similar to splicing factor, arginine/serine-rich 12
[Ciona intestinalis]
Length = 373
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 103 SGRAFRAQREDSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFV 161
+G + D ++RT+YV ++D + T ++L F +CG+V R+ GD RFAF+
Sbjct: 106 AGGVIDQTKLDEIKRTIYVGNLDSKQATADQLMTFFGTCGEVKFVRMAGDETQPTRFAFI 165
Query: 162 EFADEHGARAALNLGGTMLGYYPVRVLPS-----KTAILPVNPT 200
EFA +A+ L GT+ G +++ S K A+ PVN T
Sbjct: 166 EFAKIEHVDSAMKLNGTLFGDRALKINHSNNAIVKPAVKPVNDT 209
>gi|148686566|gb|EDL18513.1| splicing factor, arginine/serine-rich 12, isoform CRA_d [Mus
musculus]
Length = 626
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 197 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 256
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 257 ALAFNGVMFGDRPLKINHSNNAIV 280
>gi|148686563|gb|EDL18510.1| splicing factor, arginine/serine-rich 12, isoform CRA_a [Mus
musculus]
Length = 519
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 90 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 149
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 150 ALAFNGVMFGDRPLKINHSNNAIV 173
>gi|57525681|ref|NP_001003613.1| splicing regulatory glutamine/lysine-rich protein 1 [Danio rerio]
gi|50417233|gb|AAH78219.1| Zgc:100974 [Danio rerio]
Length = 512
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q+ T ++L F G V R+ GD RFAFVEFAD+
Sbjct: 164 DEIRRTVYVGNLNSQSTTADQLLKFFKQVGDVKFVRMAGDETQPTRFAFVEFADQDSVAR 223
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 224 ALTYNGVMFGDRPLKINHSNNAIV 247
>gi|348524300|ref|XP_003449661.1| PREDICTED: hypothetical protein LOC100695937 [Oreochromis
niloticus]
Length = 459
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T E+L F G V R+ GD RFAFVEF ++
Sbjct: 161 DEIRRTVYVGNLNSQTTTAEQLLEFFKQVGDVKFVRMAGDETQPTRFAFVEFVEQESVAR 220
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL L G M G P++V S AI+
Sbjct: 221 ALTLNGVMFGDRPLKVNHSNNAIV 244
>gi|414584705|tpg|DAA35276.1| TPA: hypothetical protein ZEAMMB73_072205 [Zea mays]
Length = 364
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 38/55 (69%), Gaps = 3/55 (5%)
Query: 185 VRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
++V A L +N +S+DEREMC+RT+YCTNIDKKV Q + K FFE+ CG
Sbjct: 245 IKVTEENLATLFIN---CGQSDDEREMCARTIYCTNIDKKVTQTDPKLFFESKCG 296
>gi|413944368|gb|AFW77017.1| hypothetical protein ZEAMMB73_226641 [Zea mays]
Length = 273
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Query: 180 LGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
+G V V A L +N +S+DE EMC+RT+YCTNIDKKV QA++K FFE+ CG
Sbjct: 157 IGVENVGVTEENLAALFIN---CGQSDDECEMCARTIYCTNIDKKVTQADLKLFFESICG 213
>gi|443735038|gb|ELU18893.1| hypothetical protein CAPTEDRAFT_226786 [Capitella teleta]
Length = 518
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
D +RRT++V ++D T E+L F+ G+V R+ GD RFAFVEF ++ A
Sbjct: 163 DEIRRTIFVGNLDSISTPEQLLQFFTQAGEVKYVRMAGDETLPTRFAFVEFTEQASLLKA 222
Query: 173 LNLGGTMLGYYPVRVLPSKTAIL-PVN 198
L L G++ PVRV S AI+ PV
Sbjct: 223 LVLNGSLFSGRPVRVNHSNVAIVKPVG 249
>gi|296475869|tpg|DAA17984.1| TPA: splicing factor, arginine/serine-rich 12-like [Bos taurus]
Length = 325
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 130 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 189
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 190 ALAFNGVMFGDRPLKINHSNNAIV 213
>gi|148686564|gb|EDL18511.1| splicing factor, arginine/serine-rich 12, isoform CRA_b [Mus
musculus]
Length = 223
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 90 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 149
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 150 ALAFNGVMFGDRPLKINHSNNAIV 173
>gi|327263062|ref|XP_003216340.1| PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like
[Anolis carolinensis]
Length = 626
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 177 DEIRRTVYVGNLNSQTTTADQLLEFFKPVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 236
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G + G P+++ S AI+
Sbjct: 237 ALAFNGVVFGDRPLKINHSNNAIV 260
>gi|405961668|gb|EKC27433.1| Putative splicing factor, arginine/serine-rich 7 [Crassostrea
gigas]
Length = 449
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 102 LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFV 161
L G A+ E+ +RRTVYV ++ +N+T E+L FS G+V R+ GD + A+V
Sbjct: 150 LPGNTDPAKIEE-IRRTVYVGNLAKNVTTEQLLSFFSQVGEVKYVRMAGDEKQPTKNAYV 208
Query: 162 EFADEHGARAALNLGGTMLGYYPVRV 187
EF D+ AL G M P+ V
Sbjct: 209 EFTDQRSISTALTYNGVMFQTLPISV 234
>gi|224128984|ref|XP_002328861.1| predicted protein [Populus trichocarpa]
gi|222839291|gb|EEE77628.1| predicted protein [Populus trichocarpa]
Length = 950
Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/100 (36%), Positives = 59/100 (59%), Gaps = 6/100 (6%)
Query: 100 KRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA 159
K SG +A++ED++++T++VS++ +T E+L LFS CG VV+C + HS A
Sbjct: 332 KDSSGSPDKARKEDALKKTLHVSNLSPLLTVEQLKQLFSFCGTVVECTIADSKHS----A 387
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNP 199
++E++ A AAL L +G P+ V +K+ LP P
Sbjct: 388 YIEYSKPEEATAALALNNMDVGGRPLNVETAKS--LPQKP 425
>gi|414884540|tpg|DAA60554.1| TPA: hypothetical protein ZEAMMB73_865049 [Zea mays]
Length = 401
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 205 SEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
S+DEREMC+RT+Y TNIDKKV QA++K FFE+ CG
Sbjct: 299 SDDEREMCARTIYRTNIDKKVTQADLKLFFESICG 333
>gi|224060343|ref|XP_002300152.1| predicted protein [Populus trichocarpa]
gi|222847410|gb|EEE84957.1| predicted protein [Populus trichocarpa]
Length = 892
Score = 58.9 bits (141), Expect = 2e-06, Method: Composition-based stats.
Identities = 36/100 (36%), Positives = 59/100 (59%), Gaps = 6/100 (6%)
Query: 100 KRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA 159
K SG +A++ED++++T++VS++ +T E+L LFS CG VV+C + HS A
Sbjct: 306 KDSSGSPDKARKEDALKKTLHVSNLSPLLTVEQLKQLFSFCGTVVECAIADSKHS----A 361
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNP 199
++E++ A AAL L +G P+ V +K+ LP P
Sbjct: 362 YIEYSKPEEATAALALNNMDVGGRPLNVEMAKS--LPQKP 399
>gi|410929297|ref|XP_003978036.1| PREDICTED: uncharacterized protein LOC101067881 [Takifugu rubripes]
Length = 451
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G V R+ GD RFAFVEF+++
Sbjct: 161 DEIRRTVYVGNLNSQTTTADQLLEFFRQVGSVKFVRMAGDETQPTRFAFVEFSEQESVAR 220
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 221 ALTFNGVMFGDRPLKINHSNNAIV 244
>gi|391329197|ref|XP_003739062.1| PREDICTED: probable splicing factor, arginine/serine-rich 7-like
[Metaseiulus occidentalis]
Length = 399
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 42/69 (60%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
+ +RRT+YV ++D N+T E + FS CG++ R+ G+ + ++ AFVEF ++ A
Sbjct: 164 EEIRRTIYVGNLDPNLTNEIVMKFFSQCGEIKYVRMGGETGASMKHAFVEFTEQASVGNA 223
Query: 173 LNLGGTMLG 181
GT+LG
Sbjct: 224 FQFNGTLLG 232
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVL----RFAFVEFADEHGARAA 172
R + VS+I ++ E+L LF+ G V DCR+ L R +++F + A
Sbjct: 8 RVIQVSNIASGVSREQLLALFNHVGSVEDCRLYPSVEQPLENGTRICYIKFKELWSVGVA 67
Query: 173 LNLGGTMLGYYPVRVLPSKTAILP 196
++L T+ P+ + P + +P
Sbjct: 68 MHLSNTIFMERPLLIFPMDSDQVP 91
>gi|432884719|ref|XP_004074556.1| PREDICTED: uncharacterized protein LOC101155617 [Oryzias latipes]
Length = 445
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 64/133 (48%), Gaps = 12/133 (9%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G V R+ GD RFAFVEF ++
Sbjct: 161 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGDVKFVRMAGDETQPTRFAFVEFVEQDSVAR 220
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
AL G M G P++V S AI V P L +E+ S + K+V +A+V
Sbjct: 221 ALTFNGVMFGDRPLKVNHSNNAI--VKPPELTPQAAAKELES-------VMKRVREAQVT 271
Query: 232 QFFEAACGGEVRT 244
AA E +T
Sbjct: 272 --IAAAIEPEAKT 282
>gi|303280195|ref|XP_003059390.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459226|gb|EEH56522.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 589
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 46/87 (52%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHG 168
A+ V RTVY +++ +ITE+ LA FS G V + G + RF FVEF D+
Sbjct: 288 AEDTSDVARTVYAGNVNSSITEDMLADFFSVAGVVTYVKFAGSDFNPSRFGFVEFTDKAS 347
Query: 169 ARAALNLGGTMLGYYPVRVLPSKTAIL 195
A AA L GTML ++V S I+
Sbjct: 348 AEAAKALSGTMLAEMTLKVKHSNNPII 374
>gi|384249045|gb|EIE22527.1| hypothetical protein COCSUDRAFT_66269 [Coccomyxa subellipsoidea
C-169]
Length = 303
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLG 176
RT+YV ++ + + E L LF CG V R+ GDP R+AF+EF ++ A+ L
Sbjct: 6 RTIYVGNVGKEVDENALMALFGHCGTVTQIRIAGDPSYDTRYAFIEFTTPEESQTAMMLD 65
Query: 177 GTML 180
G M+
Sbjct: 66 GMMV 69
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 7/105 (6%)
Query: 91 RRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVC 149
R+ N R R+ D V+RT+++ + ++EE ++ FS+ G+V R
Sbjct: 72 RQIRVNMARGGSGPGVVRSNDPDRVQRTIHIGGLPFDELSEESISDYFSNIGEVNAVRKS 131
Query: 150 GDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAI 194
G RFA+VEF A+ A++L G LG ++V SKT I
Sbjct: 132 G------RFAWVEFNTLQAAQTAMSLDGESLGSGTMKVSASKTPI 170
>gi|296088276|emb|CBI36502.3| unnamed protein product [Vitis vinifera]
Length = 888
Score = 56.6 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 11/111 (9%)
Query: 100 KRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA 159
K +G + + D++++T+ VS++ +T E+L LFS CG VV+C + H FA
Sbjct: 326 KDSAGSPDKVGKADALKKTLQVSNLSPLLTVEQLKQLFSFCGTVVECSITDSKH----FA 381
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRV-----LPSKTAIL--PVNPTFLP 203
++E++ A AAL L +G P+ V LP K AIL P+ LP
Sbjct: 382 YIEYSKPEEATAALALNNMDVGGRPLNVEMAKSLPPKPAILNSPLASPSLP 432
>gi|225466283|ref|XP_002270255.1| PREDICTED: uncharacterized protein LOC100244513 [Vitis vinifera]
Length = 926
Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats.
Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 11/111 (9%)
Query: 100 KRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA 159
K +G + + D++++T+ VS++ +T E+L LFS CG VV+C + H FA
Sbjct: 326 KDSAGSPDKVGKADALKKTLQVSNLSPLLTVEQLKQLFSFCGTVVECSITDSKH----FA 381
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRV-----LPSKTAIL--PVNPTFLP 203
++E++ A AAL L +G P+ V LP K AIL P+ LP
Sbjct: 382 YIEYSKPEEATAALALNNMDVGGRPLNVEMAKSLPPKPAILNSPLASPSLP 432
>gi|317106693|dbj|BAJ53194.1| JHL03K20.3 [Jatropha curcas]
Length = 642
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 13/124 (10%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172
V ++YV D++QN+TE +L LF+ GQ+V RVC D S L + +V + + H A A
Sbjct: 27 VSTSLYVGDLEQNVTETQLYDLFNQLGQIVSIRVCRDLTSRRSLGYGYVNYNNVHDAAQA 86
Query: 173 LNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
L + L + PV P + +PT R+ + +Y N+DK + +
Sbjct: 87 LEV----LNFTPVNGKPIRIMYSYRDPTI-------RKSGAGNIYIKNLDKAIDNKALHD 135
Query: 233 FFEA 236
F A
Sbjct: 136 TFSA 139
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 10/91 (10%)
Query: 107 FRAQREDSVRRTV--------YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRF 158
+ Q E +++ TV YV ++D +IT+++L LFS G + C+V DP+ V +
Sbjct: 293 LKGQFEQTLKETVDKFEGLNLYVKNLDDSITDDKLKELFSEFGTITSCKVMRDPNGVSKG 352
Query: 159 A-FVEFAD-EHGARAALNLGGTMLGYYPVRV 187
+ FV ++ E ++A + G M+ P+ V
Sbjct: 353 SGFVAYSTAEEASKALTEMNGKMIVSKPLYV 383
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 20/139 (14%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFA 159
R + R+ ++R++ +Y+ ++D+ I + L FS+ G ++ C+V D L +
Sbjct: 101 RIMYSYRDPTIRKSGAGNIYIKNLDKAIDNKALHDTFSAFGNILSCKVATDSAGQSLGYG 160
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV+F +E A+ A++ L G +L V V P FL R E E
Sbjct: 161 FVQFDNEESAKNAIDKLNGMLLNDKQVYVGP-----------FLRRQERESGTDKTKFNN 209
Query: 216 VYCTNIDKKVPQAEVKQFF 234
VY N+ + + ++K+ F
Sbjct: 210 VYVKNLSETTTEEDLKKIF 228
>gi|358055852|dbj|GAA98197.1| hypothetical protein E5Q_04880 [Mixia osmundae IAM 14324]
Length = 545
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALN 174
+ V+V + IT E L F SCG++V RV D + F +V+F D GA+AAL
Sbjct: 288 KNVFVGGLSWGITNESLQEAFESCGEIVSARVVTDRETGKSRGFGYVDFVDAAGAKAALE 347
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSE--DEREMCSRTVYCTNIDKKVPQAEVKQ 232
+ GT L + V S P P+ + DE S+TV+ N+ + Q V +
Sbjct: 348 MAGTELDGRTINVDLSAPRPPRDGPGATPKKQFNDELSAPSQTVFVGNLSFESTQDAVWE 407
Query: 233 FF 234
F
Sbjct: 408 SF 409
>gi|242020567|ref|XP_002430724.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212515914|gb|EEB17986.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 470
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 46/87 (52%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
D +RRTV ++++D++I + + LFS G+V R C P +A VEF D+ AA
Sbjct: 149 DEIRRTVVITNLDRSIGSQNVIELFSKAGEVKYVRFCFRPGDTANYALVEFTDQTSIIAA 208
Query: 173 LNLGGTMLGYYPVRVLPSKTAILPVNP 199
L + G L ++V S AI+ P
Sbjct: 209 LKMNGMQLAGNTIKVYHSIQAIVKPQP 235
>gi|115620271|ref|XP_781643.2| PREDICTED: squamous cell carcinoma antigen recognized by T-cells
3-like [Strongylocentrotus purpuratus]
Length = 890
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 67/129 (51%), Gaps = 6/129 (4%)
Query: 108 RAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADE 166
+ +R+++ RTV+V ++ N+TE+R+ +FS CG V D R+ + + + +VEF DE
Sbjct: 609 KPERDNNDPRTVFVKNLGYNVTEKRIRKVFSECGTVRDVRMVTNYQKKFKGYCYVEFEDE 668
Query: 167 HGARAALNLGGTMLGYYPVRVLPSKT-AILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A+ AL + P+ V PSK + P FL E +M ++ + + + +
Sbjct: 669 ESAKKALKKDRETINDRPMYVDPSKDRSGAPAEKKFL----YENKMEKNKLFVSGLPRTL 724
Query: 226 PQAEVKQFF 234
E+++ F
Sbjct: 725 TTEELEKTF 733
>gi|356525215|ref|XP_003531222.1| PREDICTED: uncharacterized protein LOC100790138 [Glycine max]
Length = 975
Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 6/100 (6%)
Query: 100 KRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA 159
K +G +A ++D++++T+ VS++ +T E+L LF CG VV+C + H FA
Sbjct: 328 KDSTGSPEKASKDDALKKTLQVSNLSPLLTVEQLKQLFGFCGTVVECTITDSKH----FA 383
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNP 199
++E++ A AAL L +G P+ V +K+ LP P
Sbjct: 384 YIEYSKPEEATAALALNNIDVGGRPLNVEMAKS--LPPKP 421
>gi|356510930|ref|XP_003524186.1| PREDICTED: uncharacterized protein LOC100796921 [Glycine max]
Length = 969
Score = 55.1 bits (131), Expect = 3e-05, Method: Composition-based stats.
Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 6/100 (6%)
Query: 100 KRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA 159
K +G +A ++D++++T+ VS++ +T E+L LF CG VV+C + H FA
Sbjct: 322 KDSAGSPEKASKDDALKKTLQVSNLSPLLTVEQLKQLFGFCGTVVECAITDSKH----FA 377
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNP 199
++E++ A AAL L +G P+ V +K+ LP P
Sbjct: 378 YIEYSKPEEATAALALNNIDVGGRPLNVEMAKS--LPQKP 415
>gi|303286577|ref|XP_003062578.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456095|gb|EEH53397.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 235
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 51/91 (56%), Gaps = 10/91 (10%)
Query: 108 RAQREDSVRRTVYVSDI----DQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEF 163
RA ++ + RTV+V I + ITE +A FS G VV RV H+ R A+VEF
Sbjct: 3 RASDQEKISRTVHVGGIRGLDNGEITERDVAEFFSQQGPVVAVRV----HA--RSAWVEF 56
Query: 164 ADEHGARAALNLGGTMLGYYPVRVLPSKTAI 194
AD+ AALNL G G + +RV SKTAI
Sbjct: 57 ADDASTMAALNLDGVTTGGHNLRVNRSKTAI 87
>gi|297741250|emb|CBI32381.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV D+D N+T+ +L LFS QVV RVC D H L + +V + D E ARA
Sbjct: 170 SLYVGDLDLNVTDSQLHDLFSQLAQVVSIRVCRDSTTHRSLGYGYVNYTDLEDAARALDV 229
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T L P+R++ S R R+ + ++ N+DK + + F
Sbjct: 230 LNFTPLNGKPIRIMYSH------------RDPSIRKSGTGNIFIKNLDKGIDHKALHDTF 277
Query: 235 EA 236
A
Sbjct: 278 SA 279
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 9/97 (9%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
L+G+ R + R+ S+R++ +++ ++D+ I + L FS+ G ++ C+V D
Sbjct: 235 LNGKPIRIMYSHRDPSIRKSGTGNIFIKNLDKGIDHKALHDTFSAFGNILSCKVATDASG 294
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLP 189
+ + FV+F E A+ A++ L G +L V V P
Sbjct: 295 MSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQVFVGP 331
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLG 176
+Y+ ++D +I +++L LF+ G + C+V DP+ + R + FV F+ E +RA +
Sbjct: 453 LYIKNLDDSIGDDKLKELFAQFGTITSCKVMRDPNGLSRGSGFVAFSSPEEASRALAEMN 512
Query: 177 GTMLGYYPVRV 187
M+ P+ V
Sbjct: 513 SKMVVSKPLYV 523
>gi|157870420|ref|XP_001683760.1| poly(A)-binding protein 3 [Leishmania major strain Friedlin]
gi|68126827|emb|CAJ04400.1| poly(A)-binding protein 3 [Leishmania major strain Friedlin]
Length = 544
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALNLGG 177
V+V +D I + L FS CG+V+ C+V D + + FV+F G +AAL + G
Sbjct: 101 VFVKKLDTAINAKELQAAFSKCGRVLSCKVALDSAGNSKGYGFVQFETADGTKAALEMNG 160
Query: 178 TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS---RTVYCTNIDKKVPQAEVKQFF 234
+ LG V V P R D M + R +Y NI +A+VK
Sbjct: 161 SKLGDSEVVVAP------------FVRRVDREAMAAKSFRNIYIKNITASATEADVKAIV 208
Query: 235 E 235
E
Sbjct: 209 E 209
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL 173
R +Y+ + +IT++RL +F G++ C + +P+ L+ FAFV F D+ A AAL
Sbjct: 289 RNLYIKHLPDDITDDRLREIFEPFGKITSCAIMKEPNGTLKGFAFVCFEDKQHASAAL 346
>gi|401423147|ref|XP_003876060.1| putative poly(A)-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492301|emb|CBZ27575.1| putative poly(A)-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 544
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 14/120 (11%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALNLGG 177
V+V +D + + L F+ CG+V+ C+V D + + FV+F GA+AAL + G
Sbjct: 101 VFVKKLDTAVNAKELQAAFTKCGRVLSCKVALDSAGNSKGYGFVQFETADGAKAALEMDG 160
Query: 178 TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS--RTVYCTNIDKKVPQAEVKQFFE 235
+ LG V V P FL R + E R +Y N+ V +A+VK E
Sbjct: 161 SKLGDCEVVVAP-----------FLRRVDREVMAAKSFRNIYIKNLKATVAEADVKTTVE 209
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL 173
R +YV + +IT++RL +F+ G++ C + +P+ + FAFV F D A AAL
Sbjct: 289 RNLYVKHLPDDITDDRLREIFAPFGKITSCAIMKEPNGTFKGFAFVCFEDRQHASAAL 346
>gi|167517070|ref|XP_001742876.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779500|gb|EDQ93114.1| predicted protein [Monosiga brevicollis MX1]
Length = 1825
Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 68/135 (50%), Gaps = 16/135 (11%)
Query: 105 RAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEF 163
+A + + ED RTV+V ++D ++TE+ L F+ CG++VD R+ + + +A++EF
Sbjct: 641 QAHKVEAED---RTVFVKNLDFSVTEDELRARFADCGEIVDVRMPFNHKGKAKGYAYLEF 697
Query: 164 ADEHGARAALNLGGTMLGYYPV----RVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCT 219
A AL+ ++G P+ V S+ LP T + ++++
Sbjct: 698 ASASAVNPALSKDRQIMGTRPMLVDRYVDRSQMPSLPFKHT--------TDKNPKSLFVK 749
Query: 220 NIDKKVPQAEVKQFF 234
N+D K +AE+K F
Sbjct: 750 NLDYKASEAEIKDLF 764
>gi|19112586|ref|NP_595794.1| poly(A) binding protein Pab2 [Schizosaccharomyces pombe 972h-]
gi|74675955|sp|O14327.1|PAB2_SCHPO RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2; AltName:
Full=Poly(A)-binding protein II; Short=PABII
gi|2467274|emb|CAB16904.1| poly(A) binding protein Pab2 [Schizosaccharomyces pombe]
Length = 166
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 105 RAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFA 159
A R +E ++VYV ++D ++T E L F+SCG V + C + G P FA
Sbjct: 43 EALRNDKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKG---FA 99
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAI 194
++EF++ AL L G+ML P++V P +T +
Sbjct: 100 YIEFSEPSLVPNALLLNGSMLHERPLKVTPKRTNV 134
>gi|308809515|ref|XP_003082067.1| RNA recognition motif (ISS) [Ostreococcus tauri]
gi|116060534|emb|CAL55870.1| RNA recognition motif (ISS) [Ostreococcus tauri]
Length = 412
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 9/93 (9%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
+ +RRT +VS+ +T E++ LFS CG +V+CR + S FAF+EF A AA
Sbjct: 281 EELRRTAHVSNYPSALTVEQVKQLFSFCGTIVECR---EGPSGKNFAFIEFESNKEALAA 337
Query: 173 LNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRS 205
L L G +G +RV +KT P +PR+
Sbjct: 338 LALNGMNVGGRNIRVELAKT------PRLMPRA 364
>gi|317106694|dbj|BAJ53195.1| JHL03K20.4 [Jatropha curcas]
Length = 642
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 13/124 (10%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172
V ++YV D++QN+TE +L LF+ GQVV RVC D S L + +V + + H A A
Sbjct: 27 VPTSLYVGDLEQNVTETQLYDLFNQHGQVVSIRVCRDLTSRRSLGYGYVNYNNVHDAAQA 86
Query: 173 LNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
+ + L + PV P + +PT R+ + +Y N+DK + +
Sbjct: 87 IEV----LNFTPVNGKPIRIMYSYRDPTI-------RKSGTGNIYIKNLDKAIDNKALHD 135
Query: 233 FFEA 236
F A
Sbjct: 136 TFSA 139
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 14/135 (10%)
Query: 66 FSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGR-KRLSGRA--FRAQREDSVRRTV--- 119
F +N DD QS ++ N + G+ ++ S R + + E +++ TV
Sbjct: 250 FGFVNFENPDDAAQS-VEALNGKTFDEKEWYVGKAQKKSEREVELKGRFEQTLKETVDKF 308
Query: 120 -----YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAA 172
YV ++D +IT+++L LFS G + C+V DP+ V R + FV F+ E +RA
Sbjct: 309 QGLNLYVKNLDDSITDDKLKELFSEFGTITSCKVMRDPNGVSRGSGFVAFSTAEEASRAL 368
Query: 173 LNLGGTMLGYYPVRV 187
+ G M+ P+ V
Sbjct: 369 TEMNGKMVVSKPLYV 383
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 74/156 (47%), Gaps = 25/156 (16%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP-HSVLRFA 159
R + R+ ++R++ +Y+ ++D+ I + L FS+ G ++ C+V D L +
Sbjct: 101 RIMYSYRDPTIRKSGTGNIYIKNLDKAIDNKALHDTFSAFGSILSCKVATDSLGQSLGYG 160
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV+F +E A+ A++ L G +L V V P FL + E E + T
Sbjct: 161 FVQFDNEESAKNAIDKLNGMLLNDKQVYVGP-----------FLRKQERESAIDKATFNN 209
Query: 216 VYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIIL 251
VY N+ + + ++K+ F GE T+ +++
Sbjct: 210 VYVKNLSETTTEEDLKKIF-----GEYGTITSAVVM 240
>gi|146088402|ref|XP_001466041.1| putative poly(A)-binding protein 3 [Leishmania infantum JPCM5]
gi|134070143|emb|CAM68476.1| putative poly(A)-binding protein 3 [Leishmania infantum JPCM5]
Length = 544
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 14/116 (12%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALNLGG 177
V+V +D I + L F+ CG+V+ C+V D + + FV+F GA+AAL++ G
Sbjct: 101 VFVKKLDTAINAKELQAAFTKCGRVLSCKVALDSAGNSKGYGFVQFETAEGAKAALDMNG 160
Query: 178 TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS--RTVYCTNIDKKVPQAEVK 231
+ LG V V P F+ R + E R +Y NI +A+VK
Sbjct: 161 SKLGDSEVVVAP-----------FVRRVDREVMAAKSFRNIYIKNIAAAATEADVK 205
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-N 174
R +YV + +IT+++L +F G++ C + +P+ + FAFV F D A AAL +
Sbjct: 289 RNLYVKHLPDDITDDKLREIFEPFGKITSCAIMKEPNGTFKGFAFVCFEDRQHASAALRS 348
Query: 175 LGGTML 180
L G L
Sbjct: 349 LNGQPL 354
>gi|427798071|gb|JAA64487.1| Putative splicing factor arginine/serine-rich, partial
[Rhipicephalus pulchellus]
Length = 381
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
+ +RRTVYV ++D + T E+L FS G+V R+ G RFAFVEF ++ A
Sbjct: 71 EEIRRTVYVGNLDSSATTEQLLKFFSQMGEVKYVRMAGGESQPTRFAFVEFTEQSSVGRA 130
Query: 173 LNLGG 177
L G
Sbjct: 131 LQFNG 135
>gi|347967649|ref|XP_312633.5| AGAP002335-PA [Anopheles gambiae str. PEST]
gi|333468363|gb|EAA07505.5| AGAP002335-PA [Anopheles gambiae str. PEST]
Length = 458
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
E+S +T+YV ++D ++TEE L LFS G V C++ + S+ FAF+E+A+ A+
Sbjct: 3 EESYPKTLYVGNLDTSVTEELLCTLFSQMGTVKSCKIIRE-TSIDPFAFIEYANHQSAQT 61
Query: 172 AL 173
AL
Sbjct: 62 AL 63
>gi|398016302|ref|XP_003861339.1| poly(A)-binding protein, putative [Leishmania donovani]
gi|322499565|emb|CBZ34638.1| poly(A)-binding protein, putative [Leishmania donovani]
Length = 544
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 14/116 (12%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALNLGG 177
V+V +D I + L F+ CG+V+ C+V D + + FV+F GA+AAL++ G
Sbjct: 101 VFVKKLDTAINAKELQAAFTKCGRVLSCKVALDSAGNSKGYGFVQFETAEGAKAALDMNG 160
Query: 178 TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS--RTVYCTNIDKKVPQAEVK 231
+ LG V V P F+ R + E R +Y NI +A+VK
Sbjct: 161 SKLGDSEVVVAP-----------FVRRVDREVMAAKSFRNIYIKNIAAAATEADVK 205
Score = 43.5 bits (101), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-N 174
R +YV + +IT++RL +F G++ C + +P+ + FAFV F D A AAL +
Sbjct: 289 RNLYVKHLPDDITDDRLREIFEPFGKITSCAIMKEPNGTFKGFAFVCFEDRQHASAALRS 348
Query: 175 LGGTMLGY 182
L G L +
Sbjct: 349 LNGQPLEH 356
>gi|383862669|ref|XP_003706806.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Megachile rotundata]
Length = 612
Score = 53.5 bits (127), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 25/148 (16%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+NI + + FS+ G ++ C+V D
Sbjct: 77 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESG 136
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
V + + FV F E A +++ + G +L V V F+PR E E+E+
Sbjct: 137 VSKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYV-----------GKFIPRKEREKELG 185
Query: 213 SRT-----VYCTNIDKKVPQAEVKQFFE 235
+ VY N + + ++K+ FE
Sbjct: 186 EKAKLFTNVYVKNFGEDMTDDKLKEMFE 213
Score = 43.9 bits (102), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ M+ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDMIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKNI 110
>gi|449433175|ref|XP_004134373.1| PREDICTED: uncharacterized protein LOC101203535 [Cucumis sativus]
Length = 936
Score = 53.5 bits (127), Expect = 9e-05, Method: Composition-based stats.
Identities = 35/98 (35%), Positives = 52/98 (53%), Gaps = 11/98 (11%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
D+++RT+ VS++ +T E+L LFS CG VV+C + H FA++E++ A AA
Sbjct: 334 DALKRTLQVSNLSPLLTVEQLKQLFSFCGTVVECTITDSKH----FAYIEYSKPEEATAA 389
Query: 173 LNLGGTMLGYYPVRV-----LPSKTAILPVNPTFLPRS 205
L L +G P+ V LP K A NP+ S
Sbjct: 390 LALNNMDVGGRPLNVEMAKSLPQKPA--AANPSLASSS 425
>gi|391332716|ref|XP_003740776.1| PREDICTED: polyadenylate-binding protein 1-like [Metaseiulus
occidentalis]
Length = 660
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 22/142 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+R++ V++ ++ ++I + + FS+ G ++ CRV D R +
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLHKDIDNKAIFDTFSAFGNILSCRVATDEQGNSRGYG 142
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV F E A A+N + G +L V V F+PRSE ER M +
Sbjct: 143 FVHFETEEAANEAINKVNGMLLNEKKVFV-----------GKFVPRSERERMMGDKARLF 191
Query: 216 --VYCTNIDKKVPQAEVKQFFE 235
VY N +++ ++K+ FE
Sbjct: 192 TNVYVKNFGEELDDGKLKEMFE 213
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNL 175
++YV D+D ++TE L F G V+ RVC D S L +A+V F A AL+
Sbjct: 12 SLYVGDLDPDVTESMLFEKFCQAGPVLSIRVCRDMISRRSLGYAYVNFHQPGDAERALD- 70
Query: 176 GGTM----LGYYPVRVLPSK 191
TM L P+R++ S+
Sbjct: 71 --TMNFEPLKNRPMRIMWSQ 88
>gi|340719922|ref|XP_003398393.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
terrestris]
Length = 621
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 25/148 (16%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+NI + + FS+ G ++ C+V D
Sbjct: 77 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESG 136
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
V + + FV F E A +++ + G +L V V F+PR E E+E+
Sbjct: 137 VSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYV-----------GKFIPRKEREKELG 185
Query: 213 SRT-----VYCTNIDKKVPQAEVKQFFE 235
+ VY N + + ++K+ FE
Sbjct: 186 EKAKLFTNVYVKNFGEDMTDDKLKEMFE 213
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ M+ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDMIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKNI 110
>gi|383862667|ref|XP_003706805.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Megachile rotundata]
Length = 630
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 25/148 (16%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+NI + + FS+ G ++ C+V D
Sbjct: 77 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESG 136
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
V + + FV F E A +++ + G +L V V F+PR E E+E+
Sbjct: 137 VSKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYV-----------GKFIPRKEREKELG 185
Query: 213 SRT-----VYCTNIDKKVPQAEVKQFFE 235
+ VY N + + ++K+ FE
Sbjct: 186 EKAKLFTNVYVKNFGEDMTDDKLKEMFE 213
Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ M+ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDMIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKNI 110
>gi|340719924|ref|XP_003398394.1| PREDICTED: polyadenylate-binding protein 1-like isoform 4 [Bombus
terrestris]
Length = 612
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 25/148 (16%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+NI + + FS+ G ++ C+V D
Sbjct: 77 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESG 136
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
V + + FV F E A +++ + G +L V V F+PR E E+E+
Sbjct: 137 VSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYV-----------GKFIPRKEREKELG 185
Query: 213 SRT-----VYCTNIDKKVPQAEVKQFFE 235
+ VY N + + ++K+ FE
Sbjct: 186 EKAKLFTNVYVKNFGEDMTDDKLKEMFE 213
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ M+ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDMIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKNI 110
>gi|357465579|ref|XP_003603074.1| Poly(A)-binding protein [Medicago truncatula]
gi|355492122|gb|AES73325.1| Poly(A)-binding protein [Medicago truncatula]
Length = 622
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 10/95 (10%)
Query: 107 FRAQREDSVRRTV--------YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRF 158
+ + E S++ TV Y+ ++D ++T+E+L+ LFS G V C++ DP + R
Sbjct: 288 LKERHEQSMKETVDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGISRG 347
Query: 159 A-FVEFA-DEHGARAALNLGGTMLGYYPVRVLPSK 191
+ FV F+ E RA + G M+ P+ V P++
Sbjct: 348 SGFVAFSTPEEATRALAEMNGKMVAGKPLYVAPAQ 382
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+D ++T+ +L LF+ GQVV R+C D S L + +V F++ H A A++
Sbjct: 25 SLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDV 84
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
L T L P+R++ S R R+ + ++ N+D+ +
Sbjct: 85 LNFTPLNNKPIRIMYSH------------RDPSVRKSGAANIFIKNLDRAI 123
>gi|340719918|ref|XP_003398391.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
terrestris]
Length = 630
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 25/148 (16%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+NI + + FS+ G ++ C+V D
Sbjct: 77 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESG 136
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
V + + FV F E A +++ + G +L V V F+PR E E+E+
Sbjct: 137 VSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYV-----------GKFIPRKEREKELG 185
Query: 213 SRT-----VYCTNIDKKVPQAEVKQFFE 235
+ VY N + + ++K+ FE
Sbjct: 186 EKAKLFTNVYVKNFGEDMTDDKLKEMFE 213
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ M+ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDMIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKNI 110
>gi|380019828|ref|XP_003693803.1| PREDICTED: polyadenylate-binding protein 1-like [Apis florea]
Length = 630
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 25/148 (16%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+NI + + FS+ G ++ C+V D
Sbjct: 77 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESG 136
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
V + + FV F E A +++ + G +L V V F+PR E E+E+
Sbjct: 137 VSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYV-----------GKFIPRKEREKELG 185
Query: 213 SRT-----VYCTNIDKKVPQAEVKQFFE 235
+ VY N + + ++K+ FE
Sbjct: 186 EKAKLFTNVYVKNFGEDMTDDKLKEMFE 213
Score = 43.9 bits (102), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ M+ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDMIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKNI 110
>gi|217074874|gb|ACJ85797.1| unknown [Medicago truncatula]
Length = 494
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+D ++T+ +L LF+ GQVV R+C D S L + +V F++ H A A++
Sbjct: 25 SLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDV 84
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
L T L P+R++ S R R+ + ++ N+D+ +
Sbjct: 85 LNFTPLNNKPIRIMYSH------------RDPSVRKSGAANIFIKNLDRAI 123
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 10/95 (10%)
Query: 107 FRAQREDSVRRTV--------YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRF 158
+ + E S++ TV Y+ ++D ++T+E+L+ LFS G V C++ DP + R
Sbjct: 288 LKERHEQSMKETVDKFYGANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGISRG 347
Query: 159 A-FVEFAD-EHGARAALNLGGTMLGYYPVRVLPSK 191
+ FV F+ E RA + G M+ P+ V P++
Sbjct: 348 SGFVAFSTPEEATRALAEMNGKMVAGKPLYVAPAQ 382
>gi|326427350|gb|EGD72920.1| hypothetical protein PTSG_04652 [Salpingoeca sp. ATCC 50818]
Length = 976
Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 16/129 (12%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARA 171
++ +RTV+V ++D + E+ L F CG + D R+ P + FA++EF ++
Sbjct: 686 EAAQRTVFVKNLDFAVDEDMLQMFFKDCGAIRDIRLVRKPSGQSKGFAYIEFEEKSSLAF 745
Query: 172 ALNLGGTMLGYYPVRVLP----SKTAILPVNPT-FLPRSEDEREMCSRTVYCTNIDKKVP 226
AL+ + PV V P SKTA+ P + T F P RTV+ +D
Sbjct: 746 ALSKDRQFMNGRPVLVDPCVDRSKTALRPKHQTGFDP----------RTVFVKRLDHSCT 795
Query: 227 QAEVKQFFE 235
+ +V+ FE
Sbjct: 796 EQDVRTLFE 804
>gi|326511990|dbj|BAJ95976.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 530
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADE-HGARAALN 174
++YV D++ N+T+ +L LFS GQVV RVC D +S L +A+V +++ ARA
Sbjct: 123 SLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAMEA 182
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L L P+RV+ S R R S ++ N+DK + + F
Sbjct: 183 LNFAPLNNKPIRVMYSN------------RDPSSRRSGSANIFIKNLDKTIDNKTLHDTF 230
Query: 235 EA 236
A
Sbjct: 231 SA 232
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 95/218 (43%), Gaps = 30/218 (13%)
Query: 15 NNTNNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFA 74
N+++ K NN+ K T + L+ +F++ + F +N
Sbjct: 293 NSSDKAKFNNVFVKNLSESTTKEDLIKVFSEYGTITSAVV-MIGMDGKSRCFGFVNFESP 351
Query: 75 DDNKQSAIDNFNNNRRRRNNFNQGR-KRLSGRAFRAQR--EDSVR--------RTVYVSD 123
DD + A++ N + + GR ++ S R +R E S++ + +Y+ +
Sbjct: 352 DDAAR-AVEELNGKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKN 410
Query: 124 IDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLGGTMLG 181
+D IT+++L LFS+ G++ C++ D + V + + FV F+ E ++A + G M+
Sbjct: 411 LDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMNGKMIS 470
Query: 182 YYPVRVL-----PSKTAIL----------PVNPTFLPR 204
P+ V + A+L P+ P+ PR
Sbjct: 471 GKPLYVAFAQRKEERKAMLQAQFSQMRPVPMTPSMTPR 508
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ S RR+ +++ ++D+ I + L FS+ G ++ C+V D + F
Sbjct: 194 RVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMDDIGQSKGFG 253
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRVLP 189
FV++ E A++A+ +L G ++ PV V P
Sbjct: 254 FVQYEKEESAQSAMKSLNGMLINDKPVYVGP 284
>gi|157093141|gb|ABV22225.1| RNA recognition motif protein [Karlodinium micrum]
Length = 197
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 111 REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHG 168
RE+ +R+VY+ +D T E L F SCGQ+ + D +S FA+VEFADE
Sbjct: 55 REEVDKRSVYIGSVDYGSTPEELQEHFKSCGQINRITILVDKYSGHPKGFAYVEFADEQS 114
Query: 169 ARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFL 202
+ +L L G++ ++V+ +T + P FL
Sbjct: 115 VQNSLLLNGSLFRGRQLKVMQKRTNV----PGFL 144
>gi|405953553|gb|EKC21194.1| Squamous cell carcinoma antigen recognized by T-cells 3
[Crassostrea gigas]
Length = 970
Score = 52.8 bits (125), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 16/115 (13%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHG 168
Q D RRT +VS++D +I E+R+ +F+ CG++ D R+ + +A+VEF DE G
Sbjct: 765 QDPDKSRRTSFVSNLDYSIDEDRIGQIFAKCGEMTDIRLVKTIKGKSKGYAYVEFKDELG 824
Query: 169 ARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDK 223
AL L T P+ P F+ + ED + ++ + T ++K
Sbjct: 825 VLEALKLDRT-----PIE----------GRPMFVSKCEDRSQKKAQFKFSTAMEK 864
>gi|168053933|ref|XP_001779388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669186|gb|EDQ55778.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 650
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 30/158 (18%)
Query: 76 DNKQSAIDNFNNNRRRRNNFNQGR-KRLSGR------AFRAQREDSVRR----TVYVSDI 124
DN A++ N +R + GR ++ S R F +R++ + + +Y+ ++
Sbjct: 258 DNAAKAVEALNGKKRDEKEWYVGRAQKKSEREAELRAKFEQERKERIEKYQGVNLYLKNL 317
Query: 125 DQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLGGTMLGY 182
D + +E+L LF+ G + C+V DP R + FV F+ E RA + G M+G
Sbjct: 318 DDTVDDEKLRELFADYGTITSCKVMRDPQGQSRGSGFVAFSSPEEATRAVTEMNGKMVGS 377
Query: 183 YPVRVLPS-----------------KTAILPVNPTFLP 203
P+ V + +T++ P PT LP
Sbjct: 378 KPLYVALAQRKEERRARLQAAFAQMRTSVSPAVPTSLP 415
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 15/128 (11%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAA 172
V ++YV D++ N++E +L LF+ GQVV RVC D L +A+V + A A
Sbjct: 26 VSTSLYVGDLEPNVSEAQLYELFTQVGQVVSIRVCRDLITRRSLGYAYVNYNSAQDATRA 85
Query: 173 LNLGG-TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
L L ++L P+R++ F R R+ + ++ N+DK + +
Sbjct: 86 LELLNFSVLNGNPIRIM------------FSHRDPSIRKSGTANIFIKNLDKTIDNKALH 133
Query: 232 QFFEAACG 239
F A G
Sbjct: 134 DTFSAFGG 141
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 20/141 (14%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ S+R++ +++ ++D+ I + L FS+ G ++ C+V D + +
Sbjct: 100 RIMFSHRDPSIRKSGTANIFIKNLDKTIDNKALHDTFSAFGGILSCKVAVDGSGQSKGYG 159
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSE-DEREMCSR--T 215
FV+F E A A+ + G +L V V P F+ R E D+ S+
Sbjct: 160 FVQFEQEESALTAIEKVNGMLLNDKQVFVGP-----------FVRRQERDQSGGVSKFNN 208
Query: 216 VYCTNIDKKVPQAEVKQFFEA 236
VY N+ + + ++K F A
Sbjct: 209 VYVKNLGENTTEDDLKNVFGA 229
>gi|225438781|ref|XP_002283105.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|296082381|emb|CBI21386.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 86/188 (45%), Gaps = 23/188 (12%)
Query: 17 TNNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHH---FSVINNNF 73
TN K NN+ K T + L ++F + P+ + Q D F +N
Sbjct: 205 TNKTKFNNVYVKNLLESTTDEDLKNIFGEYGPITS----AVVMQDGDGKSKCFGFVNFEN 260
Query: 74 ADDNKQSAIDNFNNNRRRRNNFNQGRKR--------LSGRAFRAQREDSVRR----TVYV 121
ADD +S ++ N + + G+ + L GR F +++V + +YV
Sbjct: 261 ADDAARS-VEALNGKKFDDKEWYVGKAQKKTEREVELKGR-FEQSLKEAVDKFQGLNLYV 318
Query: 122 SDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLGGTM 179
++D +I +++L LFS G + C+V DP+ + R + FV F+ E +RA ++ G M
Sbjct: 319 KNLDDSIADDKLRELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASRALADMNGKM 378
Query: 180 LGYYPVRV 187
+ P+ V
Sbjct: 379 VASKPLYV 386
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 13/113 (11%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172
V ++YV D++ N+T+ L LF G VV RVC D + L + +V + + A A
Sbjct: 30 VSTSLYVGDLESNVTDSHLYDLFGQLGPVVSVRVCRDLSTRRSLGYGYVNYGNTQDAARA 89
Query: 173 LNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
L+ ML + P+ P + +P+ R + ++ N+DK +
Sbjct: 90 LD----MLNFTPLNGKPIRIMYSFRDPSI-------RRSGTANIFIKNLDKAI 131
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 9/97 (9%)
Query: 102 LSGRAFRAQ---REDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
L+G+ R R+ S+RR+ +++ ++D+ I + L FS+ G ++ C++ D
Sbjct: 98 LNGKPIRIMYSFRDPSIRRSGTANIFIKNLDKAIDNKALYDTFSTFGAILSCKIATDASG 157
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLP 189
+ + FV+F +E A+ A + L G +L V V P
Sbjct: 158 QSKGYGFVQFDNEESAKNATDKLNGMLLNDKQVYVGP 194
>gi|357475273|ref|XP_003607922.1| Poly(A)-binding protein [Medicago truncatula]
gi|355508977|gb|AES90119.1| Poly(A)-binding protein [Medicago truncatula]
Length = 654
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 14/93 (15%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFA-DEHGARAALNLG 176
+YV ++D +I +E+L LFSS G + C+V DP+ V R + FV F+ E +RA L +
Sbjct: 318 LYVKNLDDSIADEKLKELFSSYGTITSCKVMRDPNGVSRGSGFVAFSTPEEASRALLEMN 377
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDER 209
G M+ P+ V T R ED R
Sbjct: 378 GKMVASKPLYV------------TLAQRKEDRR 398
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 15/114 (13%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAA 172
V ++YV D+D N+T+ +L LF+ GQVV RVC D L + +V +++ A A
Sbjct: 32 VTTSLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARA 91
Query: 173 LN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
L+ L T L P+R++ S R R+ ++ N+DK +
Sbjct: 92 LDVLNFTPLNNRPIRIMYSH------------RDPSIRKSGQGNIFIKNLDKAI 133
Score = 41.2 bits (95), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 70/157 (44%), Gaps = 27/157 (17%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ S+R++ +++ ++D+ I + L FSS G ++ C+V D + +
Sbjct: 106 RIMYSHRDPSIRKSGQGNIFIKNLDKAIDHKALHDTFSSFGNILSCKVAVDGSGQSKGYG 165
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV+F E A+ A+ L G +L V V P FL R ++ R
Sbjct: 166 FVQFDTEEAAQKAIEKLNGMLLNDKQVYVGP-----------FL-RKQERESTGDRAKFN 213
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIIL 251
V+ N+ + E+K+ F GE T+ +++
Sbjct: 214 NVFVKNLSESTTDDELKKTF-----GEFGTITSAVVM 245
>gi|292616346|ref|XP_002662984.1| PREDICTED: polyadenylate-binding protein 2-B-like [Danio rerio]
gi|292616348|ref|XP_002662985.1| PREDICTED: polyadenylate-binding protein 2-B-like [Danio rerio]
Length = 163
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDC-----RVCGDPHSVLRFAFVEFA 164
+R DS RR++YV ++D T + L F+SCG V R G P FA++EF+
Sbjct: 30 ERIDSDRRSIYVGNVDYGATADELEMYFNSCGHVNRVTIPYNRFTGHPKG---FAYIEFS 86
Query: 165 DEHGARAALNLGGTMLGYYPVRVLPSKTAI 194
D R A+ L T+ ++V P +T I
Sbjct: 87 DRESVRTAMALDETLFRGRVIKVSPKRTNI 116
>gi|350408504|ref|XP_003488426.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
impatiens]
Length = 630
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 25/148 (16%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+NI + + FS+ G ++ C+V D
Sbjct: 77 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESG 136
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
V + + FV F E A +++ + G +L V V F+PR E E+E+
Sbjct: 137 VSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYV-----------GKFIPRKEREKELG 185
Query: 213 SRT-----VYCTNIDKKVPQAEVKQFFE 235
+ VY N + + ++K FE
Sbjct: 186 EKAKLFTNVYVKNFGEDMTDDKLKDMFE 213
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ M+ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDMIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKNI 110
>gi|350408506|ref|XP_003488427.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
impatiens]
Length = 621
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 25/148 (16%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+NI + + FS+ G ++ C+V D
Sbjct: 77 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESG 136
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
V + + FV F E A +++ + G +L V V F+PR E E+E+
Sbjct: 137 VSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYV-----------GKFIPRKEREKELG 185
Query: 213 SRT-----VYCTNIDKKVPQAEVKQFFE 235
+ VY N + + ++K FE
Sbjct: 186 EKAKLFTNVYVKNFGEDMTDDKLKDMFE 213
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ M+ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDMIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKNI 110
>gi|297835442|ref|XP_002885603.1| hypothetical protein ARALYDRAFT_898933 [Arabidopsis lyrata subsp.
lyrata]
gi|297331443|gb|EFH61862.1| hypothetical protein ARALYDRAFT_898933 [Arabidopsis lyrata subsp.
lyrata]
Length = 985
Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 97 QGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVL 156
Q K G + + DS+++ + VS++ ++T E+L LFS CG VVDC + H
Sbjct: 330 QSNKGSLGSPEKGENGDSLKKFLQVSNLSPSLTTEQLRQLFSFCGTVVDCSITDSKH--- 386
Query: 157 RFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192
A++E+++ A AAL L T + P+ V +K+
Sbjct: 387 -LAYIEYSNSEEATAALALNNTEVFGRPLNVEIAKS 421
>gi|189521749|ref|XP_001923043.1| PREDICTED: polyadenylate-binding protein 2-B-like isoform 1 [Danio
rerio]
Length = 192
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDC-----RVCGDPHSVLRFAFVEFA 164
+R DS RR++YV ++D T + L F+SCG V R G P FA++EF+
Sbjct: 59 ERIDSDRRSIYVGNVDYGATADELEMYFNSCGHVNRVTIPYNRFTGHPKG---FAYIEFS 115
Query: 165 DEHGARAALNLGGTMLGYYPVRVLPSKTAI 194
D R A+ L T+ ++V P +T I
Sbjct: 116 DRESVRTAMALDETLFRGRVIKVSPKRTNI 145
>gi|357164563|ref|XP_003580095.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 661
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 13/121 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNL 175
++YV D++ ++T+ +L LFS GQVV RVC D +S L +A+V F++ A AL
Sbjct: 38 SLYVGDLEASVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNFSNPMDAARALE- 96
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
ML + P+ P + + R R S ++ N+DK + + F
Sbjct: 97 ---MLNFVPLNNKPIRV-------MYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFS 146
Query: 236 A 236
A
Sbjct: 147 A 147
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 77/167 (46%), Gaps = 29/167 (17%)
Query: 66 FSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGR-KRLSGRAFRAQR--EDSVR------ 116
F IN DD + A++ N + + GR ++ S R +R E S++
Sbjct: 258 FGFINFESPDDAVR-AVEELNGKKINDKEWYCGRAQKKSEREMDLKRRFEQSMKDAADKY 316
Query: 117 --RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAA 172
+ +Y+ ++D I++++L LFS+ G++ C+V D + V + + FV F+ E ++A
Sbjct: 317 QGQNLYLKNLDDGISDDQLRELFSTFGKITSCKVMRDQNGVSKGSGFVAFSTREEASQAI 376
Query: 173 LNLGGTMLGYYPVRVL-----PSKTAIL----------PVNPTFLPR 204
+ G ML P+ V + A+L P+ P+ PR
Sbjct: 377 TEMNGKMLSGKPLYVAFAQRKEERKAMLQAQFSQMRPVPITPSMTPR 423
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ S RR+ +++ ++D+ I + L FS+ G ++ C+V D + F
Sbjct: 109 RVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVATDDMGQSKGFG 168
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRVLP 189
FV++ E A++A+ +L G ++ PV V P
Sbjct: 169 FVQYEKEEFAQSAMKSLNGMLINDKPVYVGP 199
>gi|340501754|gb|EGR28498.1| ubiquitin-conjugating enzyme family protein, putative
[Ichthyophthirius multifiliis]
Length = 453
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
D ++T++V ++ E L F SCG+++D RV F VEFAD G + A
Sbjct: 250 DETQKTIFVGNLSFKTGSEDLRKFFQSCGEIIDARVAQQDGKSRGFGHVEFADVSGVKKA 309
Query: 173 LNLGGTMLGYYPVRV 187
L GG + ++V
Sbjct: 310 LKKGGEEIDGRQIKV 324
>gi|307165845|gb|EFN60208.1| Polyadenylate-binding protein 1 [Camponotus floridanus]
Length = 635
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 25/148 (16%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+NI + + FS+ G ++ C+V D
Sbjct: 77 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESG 136
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+ + FV F E A +++ + G +L V V F+PR E E+E+
Sbjct: 137 ASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYV-----------GKFIPRKEREKELG 185
Query: 213 SRT-----VYCTNIDKKVPQAEVKQFFE 235
+ VY N + + ++K+ FE
Sbjct: 186 EKAKLFTNVYVKNFGEDMTDDKLKEMFE 213
Score = 43.5 bits (101), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ M+ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDMIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKNI 110
>gi|385305672|gb|EIF49630.1| polyadenylate-binding protein [Dekkera bruxellensis AWRI1499]
Length = 655
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 22/143 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+R+ V++ ++ +I + L FS+ G+++ C++ D H + F
Sbjct: 132 RIMWSQRDPSMRKKGTGNVFIKNLHPDIDNKTLYDTFSTFGKILSCKIATDEHGHSKGFG 191
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS----- 213
FV + D A+AA+ N+ G +L V V P +PR + E +M
Sbjct: 192 FVHYDDAESAKAAIENVNGMLLNNMEVYVAP-----------HIPRKDRESKMQEMIKNF 240
Query: 214 RTVYCTNIDKKVPQAEVKQFFEA 236
VY N ++ + ++++ FEA
Sbjct: 241 TNVYVKNFGPEMTEDQLREMFEA 263
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALN 174
++YV D+D ++TE L +FS GQV RVC B L +A+V + A AL+
Sbjct: 61 SLYVGDLDPSVTESDLYEIFSKVGQVSSIRVCRBAVTKKSLCYAYVNYQKREEAEHALD 119
>gi|413947084|gb|AFW79733.1| hypothetical protein ZEAMMB73_180978 [Zea mays]
Length = 787
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 107 FRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADE 166
+A D+++RTV +S++ +T + + LF CG+VVDC + H A+VE++
Sbjct: 331 HKADEADALKRTVQISNLSPLLTVDYVKQLFGLCGKVVDCTITDSKH----IAYVEYSKP 386
Query: 167 HGARAAL-----NLGGTMLGYYPVRVLPSK 191
A AAL N+GG L + LPSK
Sbjct: 387 EEATAALEFNNKNVGGRPLNVEMAKSLPSK 416
>gi|226505274|ref|NP_001145712.1| uncharacterized protein LOC100279216 [Zea mays]
gi|219884125|gb|ACL52437.1| unknown [Zea mays]
Length = 787
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 107 FRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADE 166
+A D+++RTV +S++ +T + + LF CG+VVDC + H A+VE++
Sbjct: 331 HKADEADALKRTVQISNLSPLLTVDYVKQLFGLCGKVVDCTITDSKH----IAYVEYSKP 386
Query: 167 HGARAAL-----NLGGTMLGYYPVRVLPSK 191
A AAL N+GG L + LPSK
Sbjct: 387 EEATAALEFNNKNVGGRPLNVEMAKSLPSK 416
>gi|289740845|gb|ADD19170.1| polyadenylate-binding protein [Glossina morsitans morsitans]
Length = 321
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 61/121 (50%), Gaps = 15/121 (12%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-NLG 176
+Y+ +++++I + + FS+ G +++C V D H R + FV+F E ARAA+ +
Sbjct: 130 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEHGNSRGYGFVQFDSEEAARAAIEKVN 189
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS--RTVYCTNIDKKVPQAEVKQFF 234
G + V V+ ++PR + E+E + R +Y N ++ + +K+ F
Sbjct: 190 GILCNSQKVHVV-----------KYIPRRDREQEKATQFRNLYVKNFNEDFSEQNMKEMF 238
Query: 235 E 235
E
Sbjct: 239 E 239
>gi|326503608|dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADE-HGARAALN 174
++YV D++ N+T+ +L LFS GQVV RVC D +S L +A+V +++ ARA
Sbjct: 123 SLYVGDLEANVTDSQLYELFSQAGQVVSVRVCRDVNSRRSLGYAYVNYSNPMDAARAMEA 182
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L L P+RV+ S R R S ++ N+DK + + F
Sbjct: 183 LNFAPLNNKPIRVMYSN------------RDPSSRRSGSANIFIKNLDKTIDNKTLHDTF 230
Query: 235 EA 236
A
Sbjct: 231 SA 232
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 85/186 (45%), Gaps = 15/186 (8%)
Query: 15 NNTNNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFA 74
N+++ K NN+ K T + L+ +F++ + F +N
Sbjct: 293 NSSDKAKFNNVFVKNLSESTTKEDLIKVFSEYGTITSAVV-MIGMDGKSRCFGFVNFESP 351
Query: 75 DDNKQSAIDNFNNNRRRRNNFNQGR-KRLSGRAFRAQR--EDSVR--------RTVYVSD 123
DD + A++ N + + GR ++ S R +R E S++ + +Y+ +
Sbjct: 352 DDAAR-AVEELNGKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKDAADKYQGQNLYLKN 410
Query: 124 IDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLGGTMLG 181
+D IT+++L LFS+ G++ C++ D + V + + FV F+ E ++A + G M+
Sbjct: 411 LDDGITDDQLRELFSNFGKITSCKIMRDQNGVSKGSGFVSFSTREEASQALTEMNGKMIS 470
Query: 182 YYPVRV 187
P+ V
Sbjct: 471 GKPLYV 476
Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ S RR+ +++ ++D+ I + L FS+ G ++ C+V D + F
Sbjct: 194 RVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHDTFSAFGAILSCKVAMDDIGQSKGFG 253
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRVLP 189
FV++ E A++A+ +L G ++ PV V P
Sbjct: 254 FVQYEKEESAQSAMKSLNGMLINDKPVYVGP 284
>gi|449487626|ref|XP_004157720.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized LOC101203535
[Cucumis sativus]
Length = 936
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 51/98 (52%), Gaps = 11/98 (11%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
D+++RT+ VS++ +T E+L LF CG VV+C + H FA++E++ A AA
Sbjct: 334 DALKRTLQVSNLSPLLTVEQLKQLFXFCGTVVECTITDSKH----FAYIEYSKPEEATAA 389
Query: 173 LNLGGTMLGYYPVRV-----LPSKTAILPVNPTFLPRS 205
L L +G P+ V LP K A NP+ S
Sbjct: 390 LALNNMDVGGRPLNVEMAKSLPQKPA--AANPSLASSS 425
>gi|254564595|ref|XP_002489408.1| Splicing factor that reanneals U4 and U6 snRNPs during spliceosome
recycling [Komagataella pastoris GS115]
gi|238029204|emb|CAY67124.1| Splicing factor that reanneals U4 and U6 snRNPs during spliceosome
recycling [Komagataella pastoris GS115]
gi|328349837|emb|CCA36237.1| Squamous cell carcinoma antigen recognized by T-cells 3
[Komagataella pastoris CBS 7435]
Length = 865
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 18/175 (10%)
Query: 37 QKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFN 96
Q L D+F+++ + FPS +TD F I ++Q+A+D + +
Sbjct: 592 QSLEDLFSEVGTVLNTRFPSLRF-NTDRRFCYIQFT----SEQAAMDAVAKFNGKVLKDS 646
Query: 97 QGRK-----RLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD 151
QG++ ++S R+QR D R +++ ++D +T+E L LF GQ+ V D
Sbjct: 647 QGKEYHLVAKISNPEKRSQRSDE-GRELFIRNLDFKLTKEDLVPLFEKYGQIDKIYVPCD 705
Query: 152 PHSVLR--FAFVEFADEHGARAALNLGGTMLGYYPVRV-----LPSKTAILPVNP 199
+ FAF+ F ++ A +AL L L P+ V P K ++L +NP
Sbjct: 706 SETKKNNGFAFITFKEKDAAESALELNSVPLLDRPLDVSLAKKKPKKVSVLEMNP 760
>gi|168036104|ref|XP_001770548.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678256|gb|EDQ64717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 645
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 89/213 (41%), Gaps = 31/213 (14%)
Query: 20 NKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQ 79
+K NN+ K T +L +F P++ ++ F +N ADD +
Sbjct: 200 SKFNNVYVKNLADSTTDDELKKVFEAYGPISSAVV-MRDNEGKSKCFGFVNFEHADDAAK 258
Query: 80 SAIDNFNNNRRRRNNFNQGR-KRLSGR------AFRAQREDSVRR----TVYVSDIDQNI 128
A++ N + + GR ++ S R F +R++ + + +Y+ ++D I
Sbjct: 259 -AVEALNGKKFDEKEWYVGRAQKKSEREAELRAKFEQERKERIEKYQGVNLYLKNLDDTI 317
Query: 129 TEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLGGTMLGYYPVR 186
+E+L +FS G +V C+V DP R + FV F+ + RA + G M+G P+
Sbjct: 318 DDEKLREIFSEYGTIVSCKVMRDPQGQSRGSGFVAFSSPDEATRAVTEMNGKMVGSKPLY 377
Query: 187 V----------------LPSKTAILPVNPTFLP 203
V +T + P PT LP
Sbjct: 378 VALAQRKEERRNRLQAAFAQRTPVGPAVPTSLP 410
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 76/155 (49%), Gaps = 27/155 (17%)
Query: 94 NFNQGRKRLSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDC 146
NFN ++G+ R + R+ S+R++ +++ ++D++I + L F++ G ++ C
Sbjct: 86 NFNA----VNGKPIRIMFSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFAAFGTILSC 141
Query: 147 RVCGDPHSVLR-FAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPR 204
+V DP + + FV+F E A+ A+ + G +L V V P F+ R
Sbjct: 142 KVATDPSGQSKGYGFVQFEQEESAQTAIEKVNGMLLNDKQVFVGP-----------FVRR 190
Query: 205 SE-DEREMCSR--TVYCTNIDKKVPQAEVKQFFEA 236
E D+ + S+ VY N+ E+K+ FEA
Sbjct: 191 QERDQSGVVSKFNNVYVKNLADSTTDDELKKVFEA 225
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 15/114 (13%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAA 172
V ++YV D++ ++E +L +FS GQVV RVC D L +A+V + + A A
Sbjct: 22 VSTSLYVGDLESTVSEAQLYEIFSQVGQVVSIRVCRDLITRRSLGYAYVNYNNAQDATRA 81
Query: 173 LNLGG-TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
L L + P+R++ F R R+ + ++ N+DK +
Sbjct: 82 LELLNFNAVNGKPIRIM------------FSHRDPSIRKSGTANIFIKNLDKSI 123
>gi|224112839|ref|XP_002316306.1| predicted protein [Populus trichocarpa]
gi|222865346|gb|EEF02477.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQV--VDCRVCGDPHSVLRFAFVEFADEHGARAALNLG 176
VYV I TE+ + F CG + VDC D A + F E A+ AL+L
Sbjct: 197 VYVGGIPYYSTEDDIRSFFEGCGTITEVDCMTFPDSGKFRGIAIISFKTEAAAKRALDLD 256
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
G+ +G + +++ P KT + P F P E +R +Y N+ + + ++K+FF
Sbjct: 257 GSDMGGFYLKIQPYKTTKVNKEPNFAPGI---VEGYNR-IYVGNLSWDITEDDLKKFF 310
>gi|449691485|ref|XP_002170081.2| PREDICTED: uncharacterized protein LOC100212876, partial [Hydra
magnipapillata]
Length = 312
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 10/95 (10%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVC-GDPHSVLRFAFVEFADEHGARA 171
D +RRTV+V +I +IT ++L FS G+V R+C GD ++AFVEF
Sbjct: 21 DEIRRTVFVQNIPPDITADQLMAFFSGVGEVKYLRLCKGDSG---KYAFVEFTAIDSVPT 77
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSE 206
AL G + G ++V SK +P P SE
Sbjct: 78 ALQYNGVLFGGRCLKVDYSK------HPIIKPESE 106
>gi|410076202|ref|XP_003955683.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
gi|372462266|emb|CCF56548.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
Length = 582
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 103 SGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAF 160
S Q+ DS ++YV D+D +++E L +FS G V RVC D + L +A+
Sbjct: 26 SSTGSEGQQSDSNSTSLYVGDLDPSVSEALLYDIFSPIGSVTSIRVCRDAITKTSLGYAY 85
Query: 161 VEFADEHGARAALNLGGTMLGYYPVR 186
V FAD + A+ L Y P++
Sbjct: 86 VNFADHEAGKVAIE----RLNYTPIK 107
>gi|7528270|gb|AAF63202.1|AF240679_1 poly(A)-binding protein [Cucumis sativus]
Length = 649
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 15/125 (12%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172
V ++YV D+D N+T+ +L LF+ GQVV RVC D S L + +V +++ A A
Sbjct: 27 VTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRA 86
Query: 173 LN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
L+ L T L P+RV+ S R R+ S ++ N+DK + +
Sbjct: 87 LDVLNFTPLNGNPIRVMYSH------------RDPSVRKSGSGNIFIKNLDKAIDHKALH 134
Query: 232 QFFEA 236
F A
Sbjct: 135 DTFSA 139
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 15/184 (8%)
Query: 17 TNNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADD 76
+ K NN+ K + + L +MF + P+ + F +N ADD
Sbjct: 202 SEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVV-MRDGEGKSKCFGFVNFENADD 260
Query: 77 NKQSAIDNFNNNRRRRNNFNQGR-KRLSGRA--FRAQREDSVRRT--------VYVSDID 125
+S ++ N + + G+ ++ S R +++ E SV+ +YV ++D
Sbjct: 261 AARS-VEALNGKKVDGKEWYVGKAQKKSEREVELKSRFEQSVKEAADKYQGANLYVKNLD 319
Query: 126 QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLGGTMLGYY 183
+I +++L LF+ G + C+V DP+ + R + FV F+ E ARA + G M+
Sbjct: 320 DSIDDDKLKELFTGFGTITSCKVMRDPNGISRGSGFVAFSSPEEAARALAEMNGRMIVSK 379
Query: 184 PVRV 187
P+ V
Sbjct: 380 PLYV 383
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 71/157 (45%), Gaps = 27/157 (17%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ SVR++ +++ ++D+ I + L FS+ G ++ C+V D + F
Sbjct: 101 RVMYSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFG 160
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV+F E A A+ L G +L V V P FL R ++ + +T
Sbjct: 161 FVQFDTEEAALKAIEKLNGMLLNDKQVFVGP-----------FL-RKQERESVSEKTKFN 208
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIIL 251
V+ N+ + + ++K F GE + ++++
Sbjct: 209 NVFVKNLAETTSEEDLKNMF-----GEFGPITSVVVM 240
>gi|449438385|ref|XP_004136969.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
gi|449495630|ref|XP_004159899.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 649
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 15/125 (12%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172
V ++YV D+D N+T+ +L LF+ GQVV RVC D S L + +V +++ A A
Sbjct: 27 VTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPVDASRA 86
Query: 173 LN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
L+ L T L P+RV+ S R R+ S ++ N+DK + +
Sbjct: 87 LDVLNFTPLNGNPIRVMYSH------------RDPSVRKSGSGNIFIKNLDKAIDHKALH 134
Query: 232 QFFEA 236
F A
Sbjct: 135 DTFSA 139
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 15/184 (8%)
Query: 17 TNNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADD 76
+ K NN+ K + + L +MF + P+ + F +N ADD
Sbjct: 202 SEKTKFNNVFVKNLAETTSEEDLKNMFGEFGPITSVVV-MRDGEGKSKCFGFVNFENADD 260
Query: 77 NKQSAIDNFNNNRRRRNNFNQGR-KRLSGRA--FRAQREDSVRRT--------VYVSDID 125
+S ++ N + + G+ ++ S R +++ E SV+ +YV ++D
Sbjct: 261 AARS-VEALNGKKVDGKEWYVGKAQKKSEREVELKSRFEQSVKEAADKYQGANLYVKNLD 319
Query: 126 QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLGGTMLGYY 183
+I +++L LF+ G + C+V DP+ + R + FV F+ E ARA + G M+
Sbjct: 320 DSIDDDKLKELFTGFGTITSCKVMRDPNGISRGSGFVAFSSPEEAARALAEMNGRMIVSK 379
Query: 184 PVRV 187
P+ V
Sbjct: 380 PLYV 383
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 71/157 (45%), Gaps = 27/157 (17%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ SVR++ +++ ++D+ I + L FS+ G ++ C+V D + F
Sbjct: 101 RVMYSHRDPSVRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATDSSGQSKGFG 160
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV+F E A A+ L G +L V V P FL R ++ + +T
Sbjct: 161 FVQFDTEEAALKAIEKLNGMLLNDKQVFVGP-----------FL-RKQERESVSEKTKFN 208
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIIL 251
V+ N+ + + ++K F GE + ++++
Sbjct: 209 NVFVKNLAETTSEEDLKNMF-----GEFGPITSVVVM 240
>gi|255572313|ref|XP_002527095.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223533518|gb|EEF35258.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 657
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D++QN+ EE+L LFS QVV RVC D S L + +V F++ A A+
Sbjct: 46 SLYVGDLEQNVNEEQLYDLFSQIAQVVSVRVCRDQTKRSSLGYGYVNFSNPQDAANAMKA 105
Query: 175 LGGTMLGYYPVRVL 188
L T L P+R++
Sbjct: 106 LNFTPLNGKPIRIM 119
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLG 176
+Y+ ++D NI + +L LFS G + C+V D V + + FV F+ E +RA +
Sbjct: 330 LYLKNLDDNINDVKLKELFSEFGSITSCKVMLDHQGVSKGSGFVAFSTPEEASRALKEMN 389
Query: 177 GTMLGYYPVRV 187
G M+G P+ V
Sbjct: 390 GKMIGRKPLYV 400
>gi|194753367|ref|XP_001958985.1| GF12652 [Drosophila ananassae]
gi|190620283|gb|EDV35807.1| GF12652 [Drosophila ananassae]
Length = 639
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 22/142 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+RR+ V++ ++D+ I + + FS+ G ++ C+V D + + +
Sbjct: 74 RIMWSQRDPSLRRSGVGNVFIKNLDKTIDNKAIYDTFSAFGNILSCKVATDEKANSKGYG 133
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV F E A +++ + G +L V V F+PR E E+E+ +
Sbjct: 134 FVHFETEEAANTSIDKVNGMLLNGKKVYV-----------GKFIPRKEREKELGEKAKLF 182
Query: 216 --VYCTNIDKKVPQAEVKQFFE 235
VY N + ++K+FFE
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFE 204
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+ Q+I E L FSS G V+ RVC D S L +A+V F A AL+
Sbjct: 3 SLYVGDLHQDINESNLFDKFSSAGPVLSIRVCRDVMSRRSLGYAYVNFQQPADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ +L P+R++ S+ R R V+ N+DK + + F
Sbjct: 63 MNFDLLRNKPIRIMWSQ------------RDPSLRRSGVGNVFIKNLDKTIDNKAIYDTF 110
Query: 235 EA 236
A
Sbjct: 111 SA 112
>gi|326517609|dbj|BAK03723.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 990
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 9/95 (9%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHG 168
A++ +++++ V +S++ +T E + LF CG+VVDC + H A+VE++
Sbjct: 357 AEKAEALKKIVQISNLSPVLTVENIKQLFGYCGKVVDCTITESKH----IAYVEYSKPEE 412
Query: 169 ARAALNLGGTMLGYYPVRV-----LPSKTAILPVN 198
A AAL L +G P+ V LP KT+I N
Sbjct: 413 ATAALALSNVDVGGRPLNVEMAKSLPQKTSIANSN 447
>gi|332030568|gb|EGI70256.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 678
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 25/148 (16%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+NI + + FS+ G ++ C+V D
Sbjct: 120 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESG 179
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+ + FV F E A +++ + G +L V V F+PR E E+E+
Sbjct: 180 ASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYV-----------GKFIPRKEREKELG 228
Query: 213 SRT-----VYCTNIDKKVPQAEVKQFFE 235
+ VY N + + + ++K FE
Sbjct: 229 EKAKLFTNVYVKNFGEDMTEDKLKDMFE 256
>gi|195123564|ref|XP_002006275.1| GI18654 [Drosophila mojavensis]
gi|193911343|gb|EDW10210.1| GI18654 [Drosophila mojavensis]
Length = 645
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 22/142 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+RR+ V++ ++D+ I + + FS+ G ++ C+V D + +
Sbjct: 74 RIMWSQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVATDEKGTSKGYG 133
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV F E A +++ + G +L V V F+PR E E+E+ +
Sbjct: 134 FVHFETEEAANTSIDKVNGMLLNGKKVYV-----------GKFIPRKEREKELGEKAKLF 182
Query: 216 --VYCTNIDKKVPQAEVKQFFE 235
VY N + ++K+FFE
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFE 204
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ Q+I E L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R V+ N+DK + + F
Sbjct: 63 MNFDLIRDKPIRIMWSQ------------RDPSLRRSGVGNVFIKNLDKAIDNKAIYDTF 110
Query: 235 EA 236
A
Sbjct: 111 SA 112
>gi|116790996|gb|ABK25816.1| unknown [Picea sitchensis]
Length = 248
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 8/150 (5%)
Query: 90 RRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVC 149
RR+ F+ + A + ++ + R +YV +I + T E LA +F CG V V
Sbjct: 46 RRKRVFSTKAQVQVQEAVQGGKQKEIERRLYVGNIPRTSTNEELAKIFGECGNVEKAEVM 105
Query: 150 GDPHS--VLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSE 206
D ++ RFAFV + A+AA+ + GT +G RV+ P++ + L R
Sbjct: 106 YDKYTKRSRRFAFVTMSTVEDAQAAIEKMNGTEIGG---RVIKVNITEKPLDVSGLNRLT 162
Query: 207 DEREMCSR--TVYCTNIDKKVPQAEVKQFF 234
+E E VY N+ K V +K+ F
Sbjct: 163 EEAEFIDSPYKVYVGNLAKAVTTETLKKKF 192
>gi|7689377|gb|AAF67755.1|AF255335_1 poly(A)-binding protein [Spisula solidissima]
Length = 286
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 19/136 (13%)
Query: 109 AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFA 164
+QR+ S+R++ V++ ++D++I + L FS+ G ++ C++ D H + FV F
Sbjct: 3 SQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIVSDEHGSRGYGFVHFE 62
Query: 165 DEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT-----VYCT 219
E AR A+ ML L K + F+ R E +M + VY
Sbjct: 63 TEEAARNAIEKVNGML-------LNGKKVFV---GRFMNRRERLEQMGDKMKKFNNVYIK 112
Query: 220 NIDKKVPQAEVKQFFE 235
N +++ ++K +FE
Sbjct: 113 NFSEEIDDEKLKIWFE 128
>gi|307095208|gb|ADN29910.1| poly A binding protein cytoplasmic 1 isoform 1-like protein
[Triatoma matogrossensis]
Length = 341
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 68/147 (46%), Gaps = 23/147 (15%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
L GR R +QR+ S+R++ V++ ++D+NI + + FS+ G ++ C+V D
Sbjct: 79 LKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESG 138
Query: 155 VLR-FAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
+ + FV F E A +++ ML L K + F+PR E E+E+
Sbjct: 139 SSKGYGFVHFETEEAATKSIDKVNGML-------LNGKKVFV---GKFIPRKEREKELGE 188
Query: 214 RT-----VYCTNIDKKVPQAEVKQFFE 235
+ VY N + +K+ FE
Sbjct: 189 KAKLFTNVYVKNFGEDFTDDMLKEMFE 215
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++T+ L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 14 SLYVGDLHSDVTKAMLFEKFSSAGPVLSIRVCKDMITRRSLGYAYVNFQQPADAERALDT 73
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ L P+R++ S+ +P+ R+ V+ N+DK + + F
Sbjct: 74 MNFDTLKGRPIRIMWSQR-----DPSL-------RKSGVGNVFIKNLDKNIDNKAMYDTF 121
Query: 235 EA 236
A
Sbjct: 122 SA 123
>gi|255554000|ref|XP_002518040.1| conserved hypothetical protein [Ricinus communis]
gi|223542636|gb|EEF44173.1| conserved hypothetical protein [Ricinus communis]
Length = 946
Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 53/93 (56%), Gaps = 4/93 (4%)
Query: 100 KRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA 159
K SG +A +ED++++T+ VS++ +T ++L LFS G VV+C + H FA
Sbjct: 333 KDSSGSPDKAGKEDTLKKTLQVSNLSPLLTVDQLKQLFSYFGSVVECSITDSKH----FA 388
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192
++E++ A AAL L +G P+ V +K+
Sbjct: 389 YIEYSKPEEATAALALNNMDVGGRPLNVEMAKS 421
>gi|195381687|ref|XP_002049579.1| GJ21671 [Drosophila virilis]
gi|194144376|gb|EDW60772.1| GJ21671 [Drosophila virilis]
Length = 645
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 22/142 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+RR+ V++ ++D+ I + + FS+ G ++ C+V D + +
Sbjct: 74 RIMWSQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYG 133
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV F E A +++ + G +L V V F+PR E E+E+ +
Sbjct: 134 FVHFETEEAANTSIDKVNGMLLNGKKVYV-----------GKFIPRKEREKELGEKAKLF 182
Query: 216 --VYCTNIDKKVPQAEVKQFFE 235
VY N ++ ++K+FFE
Sbjct: 183 TNVYVKNFTEEFDDEKLKEFFE 204
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ Q+I E L FS+ G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R V+ N+DK + + F
Sbjct: 63 MNFDLIRNKPIRIMWSQ------------RDPSLRRSGVGNVFIKNLDKAIDNKAIYDTF 110
Query: 235 EA 236
A
Sbjct: 111 SA 112
>gi|118398866|ref|XP_001031760.1| RNA binding protein [Tetrahymena thermophila]
gi|89286093|gb|EAR84097.1| RNA binding protein [Tetrahymena thermophila SB210]
Length = 451
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALN 174
RT++V ++ I+EE+L F SCG +++ RV DP H F +V F ++ G + AL
Sbjct: 183 RTIFVGNLHFKISEEQLRHHFESCGDILNVRVIRDPKTHEGKGFGYVFFKEKTGFQNALE 242
Query: 175 LGGTMLGYYPVRV 187
GT L +RV
Sbjct: 243 KNGTKLLEREIRV 255
>gi|158563873|sp|Q5B630.2|PABP_EMENI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|259481418|tpe|CBF74916.1| TPA: Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein)(PABP)(Polyadenylate
tail-binding protein)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B630] [Aspergillus
nidulans FGSC A4]
Length = 732
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + D HG RA
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 103 LNYTLIKGKPCRIMWSQ 119
Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 14/138 (10%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D V + +
Sbjct: 114 RIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYG 173
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A A+ ML L K + + + R EM + +Y
Sbjct: 174 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNIY 226
Query: 218 CTNIDKKVPQAEVKQFFE 235
NID +V E ++ FE
Sbjct: 227 IKNIDPEVEDEEFRKLFE 244
>gi|195584475|ref|XP_002082032.1| GD11341 [Drosophila simulans]
gi|194194041|gb|EDX07617.1| GD11341 [Drosophila simulans]
Length = 379
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 22/142 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+RR+ V++ ++D+ I + + FS+ G ++ C+V D + +
Sbjct: 74 RIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYG 133
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV F E A +++ + G +L V V F+PR E E+E+ +
Sbjct: 134 FVHFETEEAANTSIDKVNGMLLNGKKVYV-----------GKFIPRKEREKELGEKAKLF 182
Query: 216 --VYCTNIDKKVPQAEVKQFFE 235
VY N + ++K+FFE
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFE 204
Score = 40.4 bits (93), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ Q++ E L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ +P+ R V+ N+D+ + + F
Sbjct: 63 MNFDLVRNKPIRIMWSQR-----DPSL-------RRSGVGNVFIKNLDRAIDNKAIYDTF 110
Query: 235 EA 236
A
Sbjct: 111 SA 112
>gi|67527154|ref|XP_661604.1| hypothetical protein AN4000.2 [Aspergillus nidulans FGSC A4]
gi|40740281|gb|EAA59471.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 711
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + D HG RA
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 103 LNYTLIKGKPCRIMWSQ 119
Score = 37.4 bits (85), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 14/138 (10%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D V + +
Sbjct: 114 RIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYG 173
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A A+ ML L K + + + R EM + +Y
Sbjct: 174 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNIY 226
Query: 218 CTNIDKKVPQAEVKQFFE 235
NID +V E ++ FE
Sbjct: 227 IKNIDPEVEDEEFRKLFE 244
>gi|427796107|gb|JAA63505.1| Putative transcriptional coactivator caper rrm superfamily, partial
[Rhipicephalus pulchellus]
Length = 505
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVL--RFAFVEFADEHGARA 171
S ++TV+V ++ + +E L LF+ CG VV R+ D + + F FV F GA
Sbjct: 339 SEKQTVFVGNLAHEVQDEELWKLFAECGDVVAVRLVRDKVTGMGKGFGFVTFKQMDGAAL 398
Query: 172 ALNLGGTMLGYYPVRVLP-SKTAI 194
AL + G + P+RV P SK A+
Sbjct: 399 ALEMTGREVSGRPIRVSPFSKQAV 422
>gi|154338582|ref|XP_001565513.1| putative poly(A)-binding protein 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062565|emb|CAM39007.1| putative poly(A)-binding protein 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 552
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 16/121 (13%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALNLGG 177
++V +D ++ + L FS CG+V+ C+V D + + FV+F GA+AAL++ G
Sbjct: 101 IFVKKLDAAVSAKALQAAFSRCGRVLSCKVALDSEGHSKGYGFVQFETADGAKAALDMNG 160
Query: 178 TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS---RTVYCTNIDKKVPQAEVKQFF 234
+G V V P R D M + R +Y NI + +++
Sbjct: 161 AKVGDSEVEVAP------------FVRRVDREAMAAKSFRNIYIKNIKATATEVDMRTTL 208
Query: 235 E 235
E
Sbjct: 209 E 209
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 60/143 (41%), Gaps = 24/143 (16%)
Query: 116 RRTVYVSD--IDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEF---ADEHG 168
R +V+V D +D EE + LFSS VV +VC D L + +V F AD
Sbjct: 7 RTSVFVGDLPVDLPRPEEAINNLFSSIAPVVSVKVCRDIATQRSLGYGYVNFQTTADAEK 66
Query: 169 ARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
ALN G G Y +RV+ F R +R+ + ++ +D V
Sbjct: 67 VIDALNFTGIAPGRY-IRVM------------FAIRDPLQRKSGANNIFVKKLDAAVSAK 113
Query: 229 EVKQFFEAACGGEVRTLPCMIIL 251
++ F + CG R L C + L
Sbjct: 114 ALQAAF-SRCG---RVLSCKVAL 132
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL 173
R +YV + +IT+++L +F+ G++ C + + + LR FAFV F D+ A AA+
Sbjct: 289 RNLYVKHLPDDITDDKLREIFAPFGKITSCAIMRESNGSLRGFAFVCFEDKQHATAAM 346
>gi|1616770|gb|AAB16848.1| putative poly(A)-binding protein FabM [Emericella nidulans]
Length = 705
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + D HG RA
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 103 LNYTLIKGKPCRIMWSQ 119
Score = 37.4 bits (85), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 14/138 (10%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D V + +
Sbjct: 114 RIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYG 173
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS--RTVY 217
FV + A A+ ML L K + + + R EM + +Y
Sbjct: 174 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNIY 226
Query: 218 CTNIDKKVPQAEVKQFFE 235
NID +V E ++ FE
Sbjct: 227 IKNIDPEVEDEEFRKLFE 244
>gi|356521524|ref|XP_003529405.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 651
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172
V ++YV D+D N+T+ +L LF+ GQVV RVC D S L + +V F++ A A
Sbjct: 29 VTTSLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARA 88
Query: 173 LN-LGGTMLGYYPVRVL 188
L+ L T L P+R++
Sbjct: 89 LDVLNFTPLNNRPIRIM 105
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 14/93 (15%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFA-DEHGARAALNLG 176
+YV ++D +I +E+L LFS G + C+V DP+ + R + FV F+ E +RA L +
Sbjct: 315 LYVKNLDDSIGDEKLKELFSPFGTITSCKVMRDPNGLSRGSGFVAFSTPEEASRALLEMN 374
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDER 209
G M+ P+ V T R ED R
Sbjct: 375 GKMVVSKPLYV------------TLAQRKEDRR 395
Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 69/156 (44%), Gaps = 25/156 (16%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ S+R++ +++ ++D+ I + L FS+ G ++ C+V D + +
Sbjct: 103 RIMYSHRDPSIRKSGQGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYG 162
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS---RT 215
FV+F +E A+ A+ L G +L V V P FL + E E
Sbjct: 163 FVQFDNEESAQKAIEKLNGMLLNDKQVYVGP-----------FLRKQERESAADKAKFNN 211
Query: 216 VYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIIL 251
V+ N+ + E+K F GE T+ +++
Sbjct: 212 VFVKNLSESTTDDELKNTF-----GEFGTITSAVVM 242
>gi|195487595|ref|XP_002091975.1| GE11925 [Drosophila yakuba]
gi|194178076|gb|EDW91687.1| GE11925 [Drosophila yakuba]
Length = 634
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 22/142 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+RR+ V++ ++D+ I + + FS+ G ++ C+V D + +
Sbjct: 74 RIMWSQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYG 133
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV F E A +++ + G +L V V F+PR E E+E+ +
Sbjct: 134 FVHFETEEAANTSIDKVNGMLLNGKKVYV-----------GKFIPRKEREKELGEKAKLF 182
Query: 216 --VYCTNIDKKVPQAEVKQFFE 235
VY N + ++K+FFE
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFE 204
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ Q++ E L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R V+ N+DK + + F
Sbjct: 63 MNFDLVRNKPIRIMWSQ------------RDPSLRRSGVGNVFIKNLDKAIDNKAIYDTF 110
Query: 235 EA 236
A
Sbjct: 111 SA 112
>gi|356576101|ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-like isoform 1 [Glycine
max]
Length = 652
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 19/137 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D++ N+ EE+L LFS Q+ RVC D S L +A+V FA+ A A+ L
Sbjct: 36 SLYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAMEL 95
Query: 176 GG-TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
T L P+R++ F R R+ V+ N+D + + F
Sbjct: 96 LNFTPLNGKPIRIM------------FSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTF 143
Query: 235 EAACGGEVRTLPCMIIL 251
AA G L C + L
Sbjct: 144 -AAFG---TVLSCKVAL 156
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFADEHGARAALN-LG 176
+Y+ ++D + ++E+L LFS G + C+V D + + + FV F+ A ALN +
Sbjct: 320 LYLKNLDDSFSDEKLKDLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEEASKALNEMN 379
Query: 177 GTMLGYYPVRV 187
G ++G P+ V
Sbjct: 380 GKLIGRKPLYV 390
>gi|332030569|gb|EGI70257.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 657
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 70/148 (47%), Gaps = 25/148 (16%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+NI + + FS+ G ++ C+V D
Sbjct: 99 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVTQDESG 158
Query: 155 VLR-FAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+ + FV F E A ++ + G +L V V F+PR E ++E+
Sbjct: 159 ASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV-----------GKFIPRKERQKELG 207
Query: 213 SRT-----VYCTNIDKKVPQAEVKQFFE 235
+ VY N + + ++K+ FE
Sbjct: 208 EKAKLFTNVYVKNFGEDMTDDKLKEMFE 235
>gi|328769593|gb|EGF79636.1| hypothetical protein BATDEDRAFT_19718 [Batrachochytrium
dendrobatidis JAM81]
Length = 431
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 3/129 (2%)
Query: 108 RAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD 165
+ + E+ V TV+V ++ N+ EE LA F+ CG V R+ D + F +V F
Sbjct: 174 KPKTEEPVNSTVFVGNLSWNVDEEMLAATFADCGTVESARIITDKETGRAKGFGYVTFES 233
Query: 166 EHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
AA+ L GT L +RV S T P + R E + + T++ N+ V
Sbjct: 234 ADALTAAMALTGTELDGREIRVDVS-TPKPPRDGNRQGRKEAPQSAPTTTLFLGNLSFNV 292
Query: 226 PQAEVKQFF 234
+ E+++ F
Sbjct: 293 TEDEIRESF 301
>gi|86170621|ref|XP_966051.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
gi|46362293|emb|CAG25231.1| RNA binding protein, putative [Plasmodium falciparum 3D7]
Length = 582
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
D + VY+ +I + EE + F + G ++ + + AFVEF +E A+AA
Sbjct: 150 DVFSKIVYMENIPEKYGEEDIKAFFQNVGNTTSYKLQYNEQKKVHTAFVEFKNEEHAKAA 209
Query: 173 LNLGGTMLGYYPV 185
LNL GT +G + +
Sbjct: 210 LNLSGTKVGLHEI 222
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL 173
S+ VYV ++ +ITEE + F SC +++ P ++ +EF G A
Sbjct: 6 SIANVVYVKNLSSDITEENIREKFGSCDEIISITFKNFPGLNQKYCQIEFKTSEGITNAS 65
Query: 174 NLGGTMLGYYPVRVLPSKTAILPV 197
L G L P+ V + I P+
Sbjct: 66 RLNGESLLNVPMVV----SVIEPI 85
>gi|356576103|ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-like isoform 2 [Glycine
max]
Length = 642
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D++ N+ EE+L LFS Q+ RVC D S L +A+V FA+ A A+ L
Sbjct: 36 SLYVGDLEGNVNEEQLYDLFSQVAQIASIRVCRDQTKRSSLGYAYVNFANAQDASNAMEL 95
Query: 176 GG-TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
T L P+R++ F R R+ V+ N+D + + F
Sbjct: 96 LNFTPLNGKPIRIM------------FSQRDPSIRKSGHGNVFIKNLDTSIDNKALHDTF 143
Query: 235 EA 236
A
Sbjct: 144 AA 145
Score = 40.4 bits (93), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 24/131 (18%)
Query: 76 DNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFR-AQREDSVRRTV--------------- 119
D+ +A++ N N R GRA R A+RE ++ +
Sbjct: 265 DSAAAAVERLNGT-----TINNDRVLYVGRAQRKAEREAELKAKIEQERISRYEKLQGAN 319
Query: 120 -YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFADEHGARAALN-LG 176
Y+ ++D + ++E+L LFS G + C+V D + + + FV F+ A ALN +
Sbjct: 320 LYLKNLDDSFSDEKLKDLFSEFGTITSCKVMIDSNGRSKGSGFVSFSTPEEASKALNEMN 379
Query: 177 GTMLGYYPVRV 187
G ++G P+ V
Sbjct: 380 GKLIGRKPLYV 390
>gi|356499763|ref|XP_003518706.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 646
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172
V ++YV D+D N+T+ +L LF+ GQVV RVC D S L + +V F++ A A
Sbjct: 26 VTTSLYVGDLDPNVTDAQLYDLFNQLGQVVSVRVCRDLTSRRSLGYGYVNFSNPQDAARA 85
Query: 173 LN-LGGTMLGYYPVRVL 188
L+ L T L P+R++
Sbjct: 86 LDVLNFTPLNNRPIRIM 102
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 14/93 (15%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFA-DEHGARAALNLG 176
+YV ++D ++ +++L LFS G + C+V DP+ + R + FV F+ + +RA L +
Sbjct: 312 LYVKNLDDSLGDDKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALLEMN 371
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDER 209
G M+ P+ V T R ED R
Sbjct: 372 GKMVVSKPLYV------------TLAQRKEDRR 392
Score = 40.8 bits (94), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 69/156 (44%), Gaps = 25/156 (16%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ S+R++ +++ ++D+ I + L FS+ G ++ C+V D + +
Sbjct: 100 RIMYSHRDPSIRKSGQGNIFIKNLDRAIDHKALHDTFSTFGNILSCKVATDSSGQSKGYG 159
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS---RT 215
FV+F +E A+ A+ L G +L V V P FL + E E
Sbjct: 160 FVQFDNEESAQKAIEKLNGMLLNDKQVYVGP-----------FLRKQERESTADKAKFNN 208
Query: 216 VYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIIL 251
V+ N+ + E+K F GE T+ +++
Sbjct: 209 VFVKNLSESTTDDELKNVF-----GEFGTITSAVVM 239
>gi|195150897|ref|XP_002016387.1| GL11548 [Drosophila persimilis]
gi|194110234|gb|EDW32277.1| GL11548 [Drosophila persimilis]
Length = 640
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 22/142 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+RR+ V++ ++D+ I + + FS+ G ++ C+V D + +
Sbjct: 74 RIMWSQRDPSLRRSGVGNVFIKNLDKGIDNKAIYDTFSAFGNILSCKVAIDEKGNSKGYG 133
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV F E A +++ + G +L V V F+PR E E+E+ +
Sbjct: 134 FVHFETEEAANTSIDRVNGMLLNGKKVYV-----------GKFIPRKEREKELGEKAKLF 182
Query: 216 --VYCTNIDKKVPQAEVKQFFE 235
VY N + ++K+FFE
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFE 204
Score = 41.2 bits (95), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ Q+I E L FS+ G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R V+ N+DK + + F
Sbjct: 63 MNFDLIRNKPIRIMWSQ------------RDPSLRRSGVGNVFIKNLDKGIDNKAIYDTF 110
Query: 235 EA 236
A
Sbjct: 111 SA 112
>gi|402218951|gb|EJT99026.1| hypothetical protein DACRYDRAFT_24111 [Dacryopinax sp. DJM-731 SS1]
Length = 1056
Score = 50.8 bits (120), Expect = 6e-04, Method: Composition-based stats.
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 80 SAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSV--RRTVYVSDIDQNITEERLAGLF 137
SA D + N + N + +S + QR D+ +R VYV+ + + + +E L LF
Sbjct: 767 SANDALSLNDQELENDRRISVNISDPTRKKQRTDAGADKREVYVAGLARGVKKEELEKLF 826
Query: 138 SSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALNLGGT 178
G V + R+ P + + F FVEF DE GA AAL+L T
Sbjct: 827 GEKGSVKEVRLALGPDGLCKGFGFVEFQDEVGAEAALSLNNT 868
>gi|242076392|ref|XP_002448132.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
gi|241939315|gb|EES12460.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
Length = 664
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADE-HGARAALN 174
++YV D++ ++++ +L LFS GQVV RVC D S L +A+V F++ ARA
Sbjct: 47 SLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFSNPLDAARALEV 106
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
L +L P+RV+ S R R S ++ N+DK +
Sbjct: 107 LNFAVLNNKPIRVMYSN------------RDPSSRRSGSANIFIKNLDKTI 145
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ S RR+ +++ ++D+ I + L FSS G ++ C+V D + F
Sbjct: 118 RVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHETFSSFGTILSCKVAMDEAGQSKGFG 177
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRVLP 189
FV++ E A+ A+ +L G ++ PV V P
Sbjct: 178 FVQYEKEEAAQNAIKSLNGMLINDKPVFVGP 208
>gi|343474538|emb|CCD13844.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 757
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 99 RKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV--L 156
R+RL G RA D + RTV++ + + + LA L + CG+ + R+CG+ +
Sbjct: 92 RQRLVGE--RAVETDVIARTVHLRFLPTGMLQSELAALCAECGEYLRVRICGNSTTTQNW 149
Query: 157 RFAFVEFADEHGARAALNLGGTML----GYYPVRV 187
+ FVEFAD GA A + G L G P+R+
Sbjct: 150 IYGFVEFADRAGAAAMMRRSGMELPNGPGKPPLRL 184
>gi|194880963|ref|XP_001974622.1| GG21846 [Drosophila erecta]
gi|190657809|gb|EDV55022.1| GG21846 [Drosophila erecta]
Length = 635
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 22/142 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+RR+ V++ ++D+ I + + FS+ G ++ C+V D + +
Sbjct: 74 RIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYG 133
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV F E A +++ + G +L V V F+PR E E+E+ +
Sbjct: 134 FVHFETEEAANTSIDKVNGMLLNGKKVYV-----------GKFIPRKEREKELGEKAKLF 182
Query: 216 --VYCTNIDKKVPQAEVKQFFE 235
VY N + ++K+FFE
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFE 204
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ Q++ E L FS+ G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLPQDVNESGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSK 191
+ +L P+R++ S+
Sbjct: 63 MNFDLLRNKPIRIMWSQ 79
>gi|343474220|emb|CCD14084.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 757
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 99 RKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV--L 156
R+RL G RA D + RTV++ + + + LA L + CG+ + R+CG+ +
Sbjct: 92 RQRLVGE--RAVETDVIARTVHLRFLPTGMLQSELAALCAECGEYLRVRICGNSTTTQNW 149
Query: 157 RFAFVEFADEHGARAALNLGGTML----GYYPVRV 187
+ FVEFAD GA A + G L G P+R+
Sbjct: 150 IYGFVEFADRAGAAAMMRRSGMELPNGPGKPPLRL 184
>gi|307207781|gb|EFN85399.1| Polyadenylate-binding protein 1 [Harpegnathos saltator]
Length = 552
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 22/143 (15%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+NI + + FS+ G ++ C+V D
Sbjct: 77 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESG 136
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+ + FV F E A +++ + G +L V V F+PR E E+E+
Sbjct: 137 ASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYV-----------GKFIPRKEREKELG 185
Query: 213 SRTVYCTNIDKKVPQAEVKQFFE 235
+ TN+ V E+K+ FE
Sbjct: 186 EKAKLFTNV--YVKNFELKRKFE 206
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ M+ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDMIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKNI 110
>gi|449445890|ref|XP_004140705.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 654
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 15/125 (12%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAA 172
V ++YV D+D N+T+ +L +F+ GQVV RVC D L + +V +++ A A
Sbjct: 27 VTTSLYVGDLDLNVTDSQLYDIFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARA 86
Query: 173 LN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
L+ L T L P+RV+ S R R+ + ++ N+DK + +
Sbjct: 87 LDVLNFTPLNGKPIRVMYSH------------RDPSIRKSGAGNIFIKNLDKAIDHKALH 134
Query: 232 QFFEA 236
F A
Sbjct: 135 DTFSA 139
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLG 176
+Y+ ++D +I +++L LF+ G + C+V DP+ + R + FV F+ + +RA + +
Sbjct: 313 LYIKNLDDSIGDDKLKELFAPFGTITSCKVMRDPNGISRGSGFVAFSTPDEASRALVEMN 372
Query: 177 GTMLGYYPVRV 187
G M+ P+ V
Sbjct: 373 GKMVVSKPLYV 383
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 9/97 (9%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
L+G+ R + R+ S+R++ +++ ++D+ I + L FS+ G ++ C+V D
Sbjct: 95 LNGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVALDSSG 154
Query: 155 VLR-FAFVEFADEHGARAAL-NLGGTMLGYYPVRVLP 189
+ + FV+F +E A A+ L G +L V V P
Sbjct: 155 QSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYVGP 191
>gi|17136378|ref|NP_476667.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|24654793|ref|NP_725749.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|24654797|ref|NP_725750.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|195335482|ref|XP_002034394.1| GM21847 [Drosophila sechellia]
gi|76803808|sp|P21187.3|PABP_DROME RecName: Full=Polyadenylate-binding protein; Short=PABP;
Short=Poly(A)-binding protein
gi|7302665|gb|AAF57745.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|7302666|gb|AAF57746.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|21428474|gb|AAM49897.1| LD24412p [Drosophila melanogaster]
gi|21626472|gb|AAM68175.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|194126364|gb|EDW48407.1| GM21847 [Drosophila sechellia]
gi|220946756|gb|ACL85921.1| pAbp-PA [synthetic construct]
Length = 634
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 22/142 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+RR+ V++ ++D+ I + + FS+ G ++ C+V D + +
Sbjct: 74 RIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYG 133
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV F E A +++ + G +L V V F+PR E E+E+ +
Sbjct: 134 FVHFETEEAANTSIDKVNGMLLNGKKVYV-----------GKFIPRKEREKELGEKAKLF 182
Query: 216 --VYCTNIDKKVPQAEVKQFFE 235
VY N + ++K+FFE
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFE 204
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ Q++ E L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R V+ N+D+ + + F
Sbjct: 63 MNFDLVRNKPIRIMWSQ------------RDPSLRRSGVGNVFIKNLDRAIDNKAIYDTF 110
Query: 235 EA 236
A
Sbjct: 111 SA 112
>gi|427789733|gb|JAA60318.1| Putative rox8 [Rhipicephalus pulchellus]
Length = 406
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD 165
A + Q D RT+YV ++D +TEE L +F GQV C++ +P + + FVEF+D
Sbjct: 2 ANKDQGNDCQPRTLYVGNLDTAVTEELLVAVFGQMGQVKGCKIIHEPGND-PYCFVEFSD 60
Query: 166 EHGARAAL 173
A +AL
Sbjct: 61 HQSAASAL 68
>gi|340057933|emb|CCC52286.1| putative RNA-binding protein [Trypanosoma vivax Y486]
Length = 371
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 120 YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTM 179
Y+ +ID+++T E L +FS CG +VDC + G R+ F++FA E A+ G
Sbjct: 12 YIGNIDRSVTLEVLRQVFSQCGTIVDCSLNGRDEDPYRYGFIDFATEDDRARAMKYNGFT 71
Query: 180 LGYYPVRVLPSK 191
L ++V SK
Sbjct: 72 LAGRKIKVGISK 83
>gi|125808454|ref|XP_001360757.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
gi|54635929|gb|EAL25332.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
Length = 640
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 22/142 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+RR+ V++ ++D+ I + + FS+ G ++ C+V D + +
Sbjct: 74 RIMWSQRDPSLRRSGVGNVFIKNLDKGIDNKAIYDTFSAFGNILSCKVAIDEKGNSKGYG 133
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV F E A +++ + G +L V V F+PR E E+E+ +
Sbjct: 134 FVHFETEEAANMSIDRVNGMLLNGKKVYV-----------GKFIPRKEREKELGEKAKLF 182
Query: 216 --VYCTNIDKKVPQAEVKQFFE 235
VY N + ++K+FFE
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFE 204
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ Q+I E L FS+ G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R V+ N+DK + + F
Sbjct: 63 MNFDLIRNKPIRIMWSQ------------RDPSLRRSGVGNVFIKNLDKGIDNKAIYDTF 110
Query: 235 EA 236
A
Sbjct: 111 SA 112
>gi|297851860|ref|XP_002893811.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
gi|297339653|gb|EFH70070.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
Length = 403
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 26/151 (17%)
Query: 100 KRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-F 158
KRLSGR V+V ++D++I ++L+ +FS+ G+V+ C+V D V + +
Sbjct: 25 KRLSGRG-----------NVFVKNLDESIDNKQLSDMFSAFGKVLSCKVVRDASGVSKGY 73
Query: 159 AFVEFADEHGARAALNL-GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVY 217
FV+F E A N+ GT++ + V P F+ R + + VY
Sbjct: 74 GFVQFYSELSVNIACNVRNGTLIRNQHIHVSP-----------FVSRRQWDESRVFTNVY 122
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVRTLPCM 248
N+ + ++K FE GE+ + M
Sbjct: 123 VKNLAETTTDDDLKMIFEEF--GEITSAVVM 151
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 108 RAQREDSVRR--TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFA 164
+ +R+ R+ +YV ++D ++ +L LFS G ++ C+V P+ + + FVEF+
Sbjct: 212 KIKRDMKTRKGTNLYVKNLDYSVDNTKLQELFSEFGTIISCKVMVHPNRISKGVGFVEFS 271
Query: 165 -DEHGARAALNLGGTMLGYYPVRV 187
E ++A L + G ++G P+ V
Sbjct: 272 TSEEASKAMLKMNGKVVGNKPIYV 295
>gi|242056799|ref|XP_002457545.1| hypothetical protein SORBIDRAFT_03g009130 [Sorghum bicolor]
gi|241929520|gb|EES02665.1| hypothetical protein SORBIDRAFT_03g009130 [Sorghum bicolor]
Length = 792
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 9/94 (9%)
Query: 103 SGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVE 162
SG +A D+++RTV +S++ +T + + LF CG+VVDC H A+VE
Sbjct: 328 SGSINKADEADALKRTVQISNLSPVLTVDYIKQLFGLCGKVVDCTTTDSKH----IAYVE 383
Query: 163 FADEHGARAAL-----NLGGTMLGYYPVRVLPSK 191
++ A AAL N+GG L + LP K
Sbjct: 384 YSKPEEATAALEFNSKNVGGRPLNVEMAKSLPPK 417
>gi|340055809|emb|CCC50130.1| conserved hypothetical protein, fragment, partial [Trypanosoma
vivax Y486]
Length = 657
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 99 RKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV--L 156
RKRL A + D + RTV++ + + + + LA L + CG+ + R+CG+ S
Sbjct: 88 RKRLVEE--DAVKTDLLARTVHLRFLPKGMLQSELAALCAECGEYLRVRICGNATSTQNW 145
Query: 157 RFAFVEFADEHGARAALNLGGTML----GYYPVRVL 188
+ FVEFAD+ GA A + G L G P+R++
Sbjct: 146 IYGFVEFADKQGAAAMMRRSGMELSNGPGKPPLRLM 181
>gi|343471164|emb|CCD16349.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 369
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 99 RKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV--L 156
R+RL G RA D + RTV++ + + + LA L + CG+ + R+CG+ +
Sbjct: 92 RQRLVGE--RAVETDVIARTVHLRFLPTGMLQSELAALCAECGEYLRVRICGNSTTTQNW 149
Query: 157 RFAFVEFADEHGARAALNLGGTML----GYYPVRV 187
+ FVEFAD GA A + G L G P+R+
Sbjct: 150 IYGFVEFADRAGAAAMMRRSGMELPNGPGKPPLRL 184
>gi|156554126|ref|XP_001604025.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Nasonia
vitripennis]
Length = 627
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 25/148 (16%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+RR+ V++ ++D+NI + + FS+ G ++ CRV D
Sbjct: 77 IKGRPIRIMWSQRDPSLRRSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCRVAQDESG 136
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+ + FV F E A +++ + G +L V V F+ R E E+E+
Sbjct: 137 SSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYV-----------GKFISRKEREKELG 185
Query: 213 SRT-----VYCTNIDKKVPQAEVKQFFE 235
+ VY N + + ++K+ FE
Sbjct: 186 EKAKLFTNVYVKNFGEDMTDDKLKEMFE 213
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDAVTRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R V+ N+DK +
Sbjct: 72 MNFDIIKGRPIRIMWSQ------------RDPSLRRSGVGNVFIKNLDKNI 110
>gi|322709554|gb|EFZ01130.1| RNA recognition motif (RRM)-containing protein [Metarhizium
anisopliae ARSEF 23]
Length = 630
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 87 NNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDC 146
NN +R N + G QR D RR+ YV ++ ++TE+ L L SS G+V+
Sbjct: 248 NNPKRHNEIVPSASKWDGGDALMQRYDKDRRSAYVGNLPSDMTEDALRALASSSGEVLGI 307
Query: 147 R-----VCGDPHSVLRFAFVEFADEHGA 169
+ + G P FAFVEFA GA
Sbjct: 308 QIYKREIPGKPGQTNCFAFVEFARPDGA 335
>gi|320163233|gb|EFW40132.1| RNA binding domain-containing protein 39 [Capsaspora owczarzaki
ATCC 30864]
Length = 600
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGT 178
VYV +D +TE + LFS CG+V+ + D +AFV+FAD A+ A+ L G
Sbjct: 357 VYVGSLDFALTEADVKSLFSPCGEVISVTLNRDNGKSKGYAFVQFADAGAAKLAMELNGV 416
Query: 179 MLGYYPVRV 187
+ P++V
Sbjct: 417 EVAGRPLKV 425
>gi|322696791|gb|EFY88578.1| RNA-binding protein, putative [Metarhizium acridum CQMa 102]
Length = 665
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 87 NNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDC 146
NN +R N + G QR D RR+ YV ++ ++TE+ L L SS G+V+
Sbjct: 282 NNPKRHNEIVPSASKWDGGDALMQRYDKDRRSAYVGNLPSDMTEDALRALASSSGEVLGI 341
Query: 147 R-----VCGDPHSVLRFAFVEFADEHGA 169
+ + G P FAF+EFA GA
Sbjct: 342 QIYKREIPGKPGQTNCFAFIEFARPDGA 369
>gi|170044609|ref|XP_001849934.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
gi|167867688|gb|EDS31071.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
Length = 628
Score = 50.1 bits (118), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 23/147 (15%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+NI + + FS+ G ++ C+V D
Sbjct: 68 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDEKG 127
Query: 155 VLR-FAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
+ + FV F E A ++ ML L +K + F+PR E E+E+
Sbjct: 128 NSKGYGFVHFETEESANTSIEKVNGML-------LNAKKVFV---GRFIPRKEREKELGE 177
Query: 214 RT-----VYCTNIDKKVPQAEVKQFFE 235
+ VY N ++ +K+ FE
Sbjct: 178 KAKLFTNVYVKNFGDELTDESLKEMFE 204
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLHADITEAMLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 63 MNFDLIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKNI 101
Score = 38.1 bits (87), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEF-ADEHGARAALNLGG 177
+YV ++D +I +ERL FS G + +V + F FV F A E +A + G
Sbjct: 288 LYVKNLDDSIDDERLRKEFSPFGTITSAKVMLEEGRSKGFGFVCFSAAEEATKAVTEMNG 347
Query: 178 TMLGYYPVRV 187
++G P+ V
Sbjct: 348 RIVGSKPLYV 357
>gi|401886540|gb|EJT50568.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
2479]
Length = 686
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 76/186 (40%), Gaps = 27/186 (14%)
Query: 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQS 80
K N+ K E EFT + L DMF + S F+ +N D K+
Sbjct: 236 KFTNIFIKNLEPEFTQKDLEDMFKPFGEIVSAAL-SVGEDGLSKGFAFVNYTTHDAAKK- 293
Query: 81 AIDNFNNNRRRRNNFNQGRKRLSGRA-FRAQREDSVRRT----------------VYVSD 123
A+D N+ N G+K GRA RA+R++ +RR +YV +
Sbjct: 294 AVDELNDK-----EIN-GKKLYVGRAQKRAERDEELRRMHEERRLENESKTAGVNLYVKN 347
Query: 124 IDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFAD-EHGARAALNLGGTMLG 181
ID ++RL F G + +V D R F FV F+ + RA + G M+G
Sbjct: 348 IDDEWDDDRLRSEFDFAGTITSAKVMRDDKGASRGFGFVCFSQPDEATRAVQEMNGKMIG 407
Query: 182 YYPVRV 187
P+ V
Sbjct: 408 TKPLYV 413
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 15/120 (12%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD- 165
Q++ ++YV ++D ++TE L +F+ G V RVC D L +A+V + +
Sbjct: 49 GQQQPGNSASLYVGELDPSVTEAMLFEIFNMVGPVASIRVCRDAVTRRSLGYAYVNYLNA 108
Query: 166 EHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
G RA +L +++ P R++ S+ R R+ ++ N+D K+
Sbjct: 109 ADGERALEHLNYSLIKNRPCRIMWSQ------------RDPALRKTGQGNIFIKNLDDKI 156
>gi|303284403|ref|XP_003061492.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456822|gb|EEH54122.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 525
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN 174
+++T++V ++ +T E+L +F+ CG V DCR+ + F FVE+A A A L
Sbjct: 177 LQKTLHVGNLAPGVTVEQLRTIFAFCGVVTDCRIANEKA----FGFVEYATHEQALAGLG 232
Query: 175 LGGTMLGYYPVRVLPSKT 192
L G L P+RV SKT
Sbjct: 233 LNGLALEDRPLRVEMSKT 250
>gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 60/110 (54%), Gaps = 13/110 (11%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNL 175
++YV D+DQ++T+ +L LF+ GQVV RVC D + L + +V ++++ A A+++
Sbjct: 41 SLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAIDV 100
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
L + P+ + ++ +PT +R+ + ++ N+DK +
Sbjct: 101 ----LNFTPLNNKTIRVSVSRRDPT-------DRKSGAGNIFIKNLDKSI 139
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLG 176
+YV ++D I +E+L LFS G + C+V DP + R + FV F+ E +RA +
Sbjct: 324 LYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMN 383
Query: 177 GTMLGYYPVRV 187
G M+ P+ V
Sbjct: 384 GKMIVSKPLYV 394
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/139 (21%), Positives = 67/139 (48%), Gaps = 23/139 (16%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN-LG 176
+++ ++D++I + L FSS G ++ C++ D + + FV++ E A+ A++ L
Sbjct: 130 IFIKNLDKSIDIKALHETFSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLN 189
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT----VYCTNIDKKVPQAEVKQ 232
G ++ V V FL + + + EM S+T +Y N+ + ++++
Sbjct: 190 GMLMNDKQVYV-----------GVFLRKQDRDSEM-SKTKFNNIYVKNLSDSTSEDDLRK 237
Query: 233 FFEAACGGEVRTLPCMIIL 251
F GE T+ ++++
Sbjct: 238 TF-----GEYGTITSVVVM 251
>gi|406698471|gb|EKD01707.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
8904]
Length = 686
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 76/186 (40%), Gaps = 27/186 (14%)
Query: 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQS 80
K N+ K E EFT + L DMF + S F+ +N D K+
Sbjct: 236 KFTNIFIKNLEPEFTQKDLEDMFKPFGEIVSAAL-SVGEDGLSKGFAFVNYTTHDAAKK- 293
Query: 81 AIDNFNNNRRRRNNFNQGRKRLSGRA-FRAQREDSVRRT----------------VYVSD 123
A+D N+ N G+K GRA RA+R++ +RR +YV +
Sbjct: 294 AVDELNDK-----EIN-GKKLYVGRAQKRAERDEELRRMHEERRLENESKTAGVNLYVKN 347
Query: 124 IDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFAD-EHGARAALNLGGTMLG 181
ID ++RL F G + +V D R F FV F+ + RA + G M+G
Sbjct: 348 IDDEWDDDRLRSEFDFAGTITSAKVMRDDKGASRGFGFVCFSQPDEATRAVQEMNGKMIG 407
Query: 182 YYPVRV 187
P+ V
Sbjct: 408 TKPLYV 413
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 15/120 (12%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD- 165
Q++ ++YV ++D ++TE L +F+ G V RVC D L +A+V + +
Sbjct: 49 GQQQPGNSASLYVGELDPSVTEAMLFEIFNMVGPVASIRVCRDAVTRRSLGYAYVNYLNA 108
Query: 166 EHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
G RA +L +++ P R++ S+ R R+ ++ N+D K+
Sbjct: 109 ADGERALEHLNYSLIKNRPCRIMWSQ------------RDPALRKTGQGNIFIKNLDDKI 156
>gi|407407545|gb|EKF31308.1| RNA-binding protein, putative [Trypanosoma cruzi marinkellei]
Length = 425
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 120 YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTM 179
Y+ +ID+++T E L +FS CG ++DC + G R+ F++FA E A+ G
Sbjct: 12 YIGNIDRSVTLEVLRQVFSQCGVIIDCSLNGRDEDPYRYGFIDFASEDDRARAMKYNGFT 71
Query: 180 LGYYPVRVLPSK 191
L ++V SK
Sbjct: 72 LAGRKIKVGVSK 83
>gi|392591591|gb|EIW80918.1| hypothetical protein CONPUDRAFT_103939 [Coniophora puteana
RWD-64-598 SS2]
Length = 1056
Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 63/135 (46%), Gaps = 16/135 (11%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARA 171
D+ + VYV+ + + T+E L G+F + G V D R+ D + + FAFVEF E A+A
Sbjct: 803 DANEKEVYVAGLSKYTTKEDLKGVFKTYGTVNDVRLVTDKNGQSKGFAFVEFESETSAQA 862
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDER--------EMCSRTVYCTNIDK 223
AL+ Y +R + A+ + PR +D + E+ R+V N+
Sbjct: 863 ALSANN-----YELR--SRRIAVTLADSRVKPRYQDSKDTGLGRQAELQQRSVRIRNLPA 915
Query: 224 KVPQAEVKQFFEAAC 238
+ ++Q E C
Sbjct: 916 GAQEGLLQQALEKYC 930
>gi|407846855|gb|EKG02815.1| RNA-binding protein, putative [Trypanosoma cruzi]
Length = 422
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 120 YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTM 179
Y+ +ID+++T E L +FS CG ++DC + G R+ F++FA E A+ G
Sbjct: 12 YIGNIDRSVTLEVLRQVFSQCGVIIDCSLNGRDEDPYRYGFIDFASEDDRARAMKYNGFT 71
Query: 180 LGYYPVRVLPSK 191
L ++V SK
Sbjct: 72 LAGRKIKVGVSK 83
>gi|255074269|ref|XP_002500809.1| predicted protein [Micromonas sp. RCC299]
gi|226516072|gb|ACO62067.1| predicted protein [Micromonas sp. RCC299]
Length = 456
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN 174
V RTVY +++ +ITE+ LA FS G V + G + RF FVEF + A +A
Sbjct: 238 VSRTVYAGNVNSSITEDMLADFFSIAGNVTYVKFAGSEFNPSRFGFVEFDTKAAAESAKA 297
Query: 175 LGGTMLGYYPVRVLPSKTAIL 195
L GT + ++V S I+
Sbjct: 298 LTGTQVAEMTIKVKHSNNPIV 318
>gi|261327760|emb|CBH10737.1| RNA-binding protein, putative [Trypanosoma brucei gambiense DAL972]
Length = 755
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 8/95 (8%)
Query: 99 RKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV--L 156
R+R++ ++ A+ D++ RTV++ + + + LA L + CG+ + R+CG+ +
Sbjct: 90 RQRIAAQS--AEETDAIARTVHLRFLPTGMLQSELAALCAQCGEYLRVRICGNSTNTQNW 147
Query: 157 RFAFVEFADEHGARAALNLGGTML----GYYPVRV 187
+ FVEFAD GA A + G L G P+R+
Sbjct: 148 IYGFVEFADRSGAAAMMRQSGLELPNGPGKPPLRL 182
>gi|224137600|ref|XP_002327166.1| predicted protein [Populus trichocarpa]
gi|222835481|gb|EEE73916.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 14/135 (10%)
Query: 66 FSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGR-KRLSGRAF--RAQREDSVRRTV--- 119
F +N ADD + A++ N + + G+ ++ S R + + E S++ TV
Sbjct: 233 FGFVNFESADDAAK-AVEALNGKKIDGEEWYVGKAQKKSERELELKGRFEQSMKETVDKF 291
Query: 120 -----YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFA-DEHGARAA 172
Y+ ++D +I +E+L LFS G + C+V DP + R + FV F+ E +RA
Sbjct: 292 QGLNLYIKNLDDSINDEKLKELFSDFGAITSCKVMRDPSGISRGSGFVAFSTPEEASRAL 351
Query: 173 LNLGGTMLGYYPVRV 187
+ G ML P+ V
Sbjct: 352 AEMNGKMLISKPLYV 366
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 15/114 (13%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172
V ++YV D+D N+T+ +L +F+ GQVV RVC D + L + +V +++ A A
Sbjct: 10 VPTSLYVGDLDFNVTDSQLYDVFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARA 69
Query: 173 LN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
L+ L T L P+R++ S R R+ ++ N+DK +
Sbjct: 70 LDVLNFTPLNNKPIRIMYSH------------RDPSIRKSGMANIFIKNLDKGI 111
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ S+R++ +++ ++D+ I + L FSS G ++ C+V D + +
Sbjct: 84 RIMYSHRDPSIRKSGMANIFIKNLDKGIDHKALHDTFSSFGNILSCKVATDASGQSKGYG 143
Query: 160 FVEFADEHGARAALNLGGTML 180
FV+F E A+ A++ ML
Sbjct: 144 FVQFDSEEAAQNAIDKLNGML 164
>gi|302142286|emb|CBI19489.3| unnamed protein product [Vitis vinifera]
Length = 621
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNL 175
++YV D+D NIT+ +L LF GQV+ RVC D + L + +V +++ A AL+L
Sbjct: 19 SLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDL 78
Query: 176 GG-TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
T L P+R++ S R R+ + ++ N+DK + + F
Sbjct: 79 LNFTPLNGKPIRIMYSH------------RDPSIRKSGTANIFIKNLDKSIDNKALHDTF 126
Query: 235 EA 236
A
Sbjct: 127 SA 128
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFA-DEHGARAALNLG 176
+Y+ ++D +I +++L LFS G + C+V DP + R + FV F+ E +RA +
Sbjct: 302 LYIKNLDDSIGDDKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALTEMN 361
Query: 177 GTMLGYYPVRV 187
G M+ P+ V
Sbjct: 362 GKMVVSKPLYV 372
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 77/162 (47%), Gaps = 28/162 (17%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
L+G+ R + R+ S+R++ +++ ++D++I + L FS+ G ++ C++ DP
Sbjct: 84 LNGKPIRIMYSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFSAFGNILSCKIATDPSG 143
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+ + FV+F +E A+ A++ L G ++ V V FL + E E +
Sbjct: 144 QSKGYGFVQFDNEESAQNAIDKLNGMLINDKQVYV-----------GQFLRKQERETALN 192
Query: 213 SRT---VYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIIL 251
VY N+ + + ++K F GE + ++++
Sbjct: 193 KTKFNNVYVKNLSESTTEEDLKNIF-----GEFGIITSVVVM 229
>gi|72388298|ref|XP_844573.1| RNA-binding protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62175359|gb|AAX69502.1| RNA-binding protein, putative [Trypanosoma brucei]
gi|62359690|gb|AAX80122.1| hypothetical protein Tb04.30K5.750 [Trypanosoma brucei]
gi|70801106|gb|AAZ11014.1| RNA-binding protein, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 755
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 8/95 (8%)
Query: 99 RKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV--L 156
R+R++ ++ A+ D++ RTV++ + + + LA L + CG+ + R+CG+ +
Sbjct: 90 RQRIAAQS--AEETDAIARTVHLRFLPTGMLQSELAALCAQCGEYLRVRICGNSTNTQNW 147
Query: 157 RFAFVEFADEHGARAALNLGGTML----GYYPVRV 187
+ FVEFAD GA A + G L G P+R+
Sbjct: 148 IYGFVEFADRSGAAAMMRQSGLELPNGPGKPPLRL 182
>gi|255555393|ref|XP_002518733.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223542114|gb|EEF43658.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 644
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 15/125 (12%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAA 172
V ++YV D++ N+T+ L LF+ GQVV RVC D L + +V ++ A A
Sbjct: 22 VTTSLYVGDLEANVTDSHLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSSPQDAARA 81
Query: 173 LN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
L+ L T L P+R++ S R R+ S ++ N+DK + +
Sbjct: 82 LDMLNFTPLNGSPIRIMYSH------------RDPSVRKSGSGNIFIKNLDKGIDHKALH 129
Query: 232 QFFEA 236
F A
Sbjct: 130 DTFSA 134
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLG 176
+Y+ ++D +I ++RL LFS G + C+V DP+ + R + FV F+ E ++A + +
Sbjct: 308 LYIKNLDDSIGDDRLKQLFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASKALMEMN 367
Query: 177 GTMLGYYPVRV 187
G M+ P+ V
Sbjct: 368 GKMVVSKPLYV 378
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 72/156 (46%), Gaps = 25/156 (16%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ SVR++ +++ ++D+ I + L FS+ G ++ C+V D + +
Sbjct: 96 RIMYSHRDPSVRKSGSGNIFIKNLDKGIDHKALHDTFSAFGNILSCKVATDSSGQSKGYG 155
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS---RT 215
FV+F +E A+ A+ L G +L V V P FL + E E +
Sbjct: 156 FVQFDNEESAQKAIEKLNGMLLNDKQVYVGP-----------FLRKQERESAIDKTRFNN 204
Query: 216 VYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIIL 251
VY N+ + + ++K+ F GE T+ +++
Sbjct: 205 VYVKNLSETTTEEDLKKAF-----GEYGTITSAVVM 235
>gi|940288|gb|AAA74208.1| protein localized in the nucleoli of pea nuclei; ORF; putative
[Pisum sativum]
Length = 611
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 13/156 (8%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGAR 170
E+ +T++V ++ ++ + F CG+VVD R+ D + F VEFA A+
Sbjct: 350 ENGGSKTLFVGNLSFSVQRSDIESFFQECGEVVDVRLASDEDGRFKGFGHVEFATAEAAQ 409
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRS---EDEREMCSRTVYCTNIDKKVPQ 227
+AL L G L VR+ + F P S ++ S+TV+ DK + +
Sbjct: 410 SALELNGQELLQRGVRL-----DLARERGAFTPNSTGNQNSGRGQSQTVFVRGFDKSLGE 464
Query: 228 AEVKQFFE---AACGGEVR-TLPCMIILFYFHLFIY 259
E++ E A+CG R ++P Y F Y
Sbjct: 465 DEIRAKLEQHFASCGQASRVSIPKDYDTGYSKGFAY 500
>gi|71667313|ref|XP_820607.1| RNA-binding protein [Trypanosoma cruzi strain CL Brener]
gi|70885958|gb|EAN98756.1| RNA-binding protein, putative [Trypanosoma cruzi]
Length = 424
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 120 YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTM 179
Y+ +ID+++T E L +FS CG ++DC + G R+ F++FA E A+ G
Sbjct: 12 YIGNIDRSVTLEVLRQVFSQCGVIIDCSLNGRDEDPYRYGFIDFASEDDRARAMKYNGFT 71
Query: 180 LGYYPVRVLPSK 191
L ++V SK
Sbjct: 72 LAGRKIKVGVSK 83
>gi|71660275|ref|XP_821855.1| RNA-binding protein [Trypanosoma cruzi strain CL Brener]
gi|70887244|gb|EAO00004.1| RNA-binding protein, putative [Trypanosoma cruzi]
Length = 422
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 120 YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTM 179
Y+ +ID+++T E L +FS CG ++DC + G R+ F++FA E A+ G
Sbjct: 12 YIGNIDRSVTLEVLRQVFSQCGVIIDCSLNGRDEDPYRYGFIDFASEDDRARAMKYNGFT 71
Query: 180 LGYYPVRVLPSKTAI 194
L ++V SK +
Sbjct: 72 LAGRKIKVGVSKGNV 86
>gi|125524053|gb|EAY72167.1| hypothetical protein OsI_00016 [Oryza sativa Indica Group]
Length = 920
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 103 SGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVE 162
SG + + D +++ V +S++ +T + + LF CG+VVDC + H A+VE
Sbjct: 286 SGSTDKTDKGDVLKKMVQISNLSPLLTVDHIKQLFGYCGKVVDCTITDSKH----IAYVE 341
Query: 163 FADEHGARAALNLGGTMLGYYPVRV-----LPSKTAILPVN 198
++ + A AAL L +G P+ V LP KT + N
Sbjct: 342 YSKQEEATAALALNNMDVGGRPLNVEMAKSLPPKTNLANSN 382
>gi|342185222|emb|CCC94705.1| putative RNA-binding protein [Trypanosoma congolense IL3000]
Length = 462
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLG 176
RTVY+S + ++ + + +SCG V RVC FAFVE AD G AAL LG
Sbjct: 347 RTVYISHLPASLPQRTFMEMLNSCGSVNKVRVCRGKGYATLFAFVEMADSEGVVAALRLG 406
Query: 177 GTMLGYYPVRVLPSKTAILPVNP 199
+ + + +R+ ++ I P
Sbjct: 407 KSNIFGHNIRLQMARNPIQDSQP 429
>gi|318087106|gb|ADV40145.1| putative apoptosis-promoting RNA-binding protein TIA-1/TIAR
[Latrodectus hesperus]
Length = 332
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 25/148 (16%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D++I + + FS+ G ++ C+V D S
Sbjct: 59 VKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVATDEES 118
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+ + FV F E A A+ + G +L V V F+PRSE E+++
Sbjct: 119 NSKGYGFVHFETEEAANNAIQKVNGMLLNGRKVFV-----------GKFVPRSEREKQLG 167
Query: 213 SRT-----VYCTNIDKKVPQAEVKQFFE 235
+ VY N + ++++ FE
Sbjct: 168 QKARRFMNVYIKNFGDDLDDEKLREMFE 195
>gi|225458678|ref|XP_002284923.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147773643|emb|CAN76464.1| hypothetical protein VITISV_017035 [Vitis vinifera]
Length = 640
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNL 175
++YV D+D NIT+ +L LF GQV+ RVC D + L + +V +++ A AL+L
Sbjct: 19 SLYVGDLDVNITDSQLYDLFIQAGQVLSVRVCRDLSTRRSLGYGYVNYSNPQDAARALDL 78
Query: 176 GG-TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
T L P+R++ S R R+ + ++ N+DK + + F
Sbjct: 79 LNFTPLNGKPIRIMYSH------------RDPSIRKSGTANIFIKNLDKSIDNKALHDTF 126
Query: 235 EA 236
A
Sbjct: 127 SA 128
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFA-DEHGARAALNLG 176
+Y+ ++D +I +++L LFS G + C+V DP + R + FV F+ E +RA +
Sbjct: 302 LYIKNLDDSIGDDKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRALTEMN 361
Query: 177 GTMLGYYPVRV 187
G M+ P+ V
Sbjct: 362 GKMVVSKPLYV 372
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 77/162 (47%), Gaps = 28/162 (17%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
L+G+ R + R+ S+R++ +++ ++D++I + L FS+ G ++ C++ DP
Sbjct: 84 LNGKPIRIMYSHRDPSIRKSGTANIFIKNLDKSIDNKALHDTFSAFGNILSCKIATDPSG 143
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+ + FV+F +E A+ A++ L G ++ V V FL + E E +
Sbjct: 144 QSKGYGFVQFDNEESAQNAIDKLNGMLINDKQVYV-----------GQFLRKQERETALN 192
Query: 213 SRT---VYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIIL 251
VY N+ + + ++K F GE + ++++
Sbjct: 193 KTKFNNVYVKNLSESTTEEDLKNIF-----GEFGIITSVVVM 229
>gi|383863609|ref|XP_003707272.1| PREDICTED: nucleolysin TIAR-like [Megachile rotundata]
Length = 392
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
E+S RT+YV ++D +++EE L LFS G V C++ +P + +AFVEF + A
Sbjct: 3 EESNPRTLYVGNLDSSVSEELLCALFSQIGAVKGCKIIREPGND-PYAFVEFTNHQCAAT 61
Query: 172 AL 173
AL
Sbjct: 62 AL 63
Score = 40.4 bits (93), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAAL-NL 175
++V D+ I + L F+ G++ +CR+ DP ++ +AFV F + A AA+ +
Sbjct: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTMKSKGYAFVSFVKKSEAEAAIAAM 157
Query: 176 GGTMLGYYPVRV 187
G LG +R
Sbjct: 158 NGQWLGSRSIRT 169
>gi|115433970|ref|NP_001041743.1| Os01g0101600 [Oryza sativa Japonica Group]
gi|52076599|dbj|BAD45501.1| nuclear protein -like [Oryza sativa Japonica Group]
gi|113531274|dbj|BAF03657.1| Os01g0101600 [Oryza sativa Japonica Group]
gi|125568671|gb|EAZ10186.1| hypothetical protein OsJ_00013 [Oryza sativa Japonica Group]
gi|215712245|dbj|BAG94372.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768572|dbj|BAH00801.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 978
Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 103 SGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVE 162
SG + + D +++ V +S++ +T + + LF CG+VVDC + H A+VE
Sbjct: 344 SGSTDKTDKGDVLKKMVQISNLSPLLTVDHIKQLFGYCGKVVDCTITDSKH----IAYVE 399
Query: 163 FADEHGARAALNLGGTMLGYYPVRV-----LPSKTAILPVN 198
++ + A AAL L +G P+ V LP KT + N
Sbjct: 400 YSKQEEATAALALNNMDVGGRPLNVEMAKSLPPKTNLANSN 440
>gi|403213707|emb|CCK68209.1| hypothetical protein KNAG_0A05440 [Kazachstania naganishii CBS
8797]
Length = 442
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFA 164
A RE S R +YV ++D++ITE+ L F GQ+VD +V D S + +AFVE+A
Sbjct: 69 ATHGGRETS-DRVLYVGNLDKSITEDILKQYFQVAGQIVDVKVMIDKKSNYVNYAFVEYA 127
Query: 165 DEHGARAALN-LGGTMLGYYPVRV 187
H A AL L G + V++
Sbjct: 128 KAHDASVALQTLNGIQIENNKVKI 151
>gi|289742137|gb|ADD19816.1| polyA-binding protein [Glossina morsitans morsitans]
Length = 653
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 24/156 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+RR+ V++ ++D+ I + + FS+ G ++ C+V D + +
Sbjct: 74 RIMWSQRDPSLRRSGIGNVFIKNLDKTIDNKAIYDTFSAFGNILSCKVATDDKGTSKGYG 133
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV F E A A+ + G +L V V F+PR E E+++ +
Sbjct: 134 FVHFETEEAANNAIEKVNGMLLNGKKVYV-----------GKFIPRKEREKDLGEKAKLF 182
Query: 216 --VYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMI 249
VY N V ++K+ F+ G++ + MI
Sbjct: 183 TNVYVKNFGDDVDDEKLKEMFDPY--GKITSYKVMI 216
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ Q+I E L FS+ G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSNAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ +L P+R++ S+ R R V+ N+DK + + F
Sbjct: 63 MNFDLLRNKPIRIMWSQ------------RDPSLRRSGIGNVFIKNLDKTIDNKAIYDTF 110
Query: 235 EA 236
A
Sbjct: 111 SA 112
>gi|157125851|ref|XP_001654419.1| polyadenylate-binding protein [Aedes aegypti]
gi|157125853|ref|XP_001654420.1| polyadenylate-binding protein [Aedes aegypti]
gi|94468824|gb|ABF18261.1| polyadenylate-binding protein [Aedes aegypti]
gi|108873484|gb|EAT37709.1| AAEL010318-PB [Aedes aegypti]
gi|108873485|gb|EAT37710.1| AAEL010318-PA [Aedes aegypti]
Length = 628
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 25/148 (16%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+NI + + FS+ G ++ C+V D
Sbjct: 68 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDEKG 127
Query: 155 VLR-FAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+ + FV F E A ++ + G +L V V F+PR E E+E+
Sbjct: 128 NSKGYGFVHFETEESANTSIEKVNGMLLNGKKVYV-----------GRFIPRKEREKELG 176
Query: 213 SRT-----VYCTNIDKKVPQAEVKQFFE 235
+ VY N ++ +K+ FE
Sbjct: 177 EKAKLFTNVYVKNFGDELNDETLKEMFE 204
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLHADITEAILFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 63 MNFDLIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKNI 101
>gi|110756942|ref|XP_395357.3| PREDICTED: nucleolysin TIAR [Apis mellifera]
gi|340713958|ref|XP_003395500.1| PREDICTED: nucleolysin TIAR-like [Bombus terrestris]
gi|350421173|ref|XP_003492759.1| PREDICTED: nucleolysin TIAR-like [Bombus impatiens]
gi|380025693|ref|XP_003696603.1| PREDICTED: nucleolysin TIAR-like [Apis florea]
Length = 392
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
E+S RT+YV ++D +++EE L LFS G V C++ +P + +AFVEF + A
Sbjct: 3 EESNPRTLYVGNLDTSVSEELLCALFSQIGAVKGCKIIREPGND-PYAFVEFTNHQCAAT 61
Query: 172 AL 173
AL
Sbjct: 62 AL 63
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAAL-NL 175
++V D+ I + L F+ G++ +CR+ DP ++ +AFV F + A AA+ +
Sbjct: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTMKSKGYAFVSFVKKSEAEAAIAAM 157
Query: 176 GGTMLGYYPVRV 187
G LG +R
Sbjct: 158 NGQWLGSRSIRT 169
>gi|195429537|ref|XP_002062815.1| GK19652 [Drosophila willistoni]
gi|194158900|gb|EDW73801.1| GK19652 [Drosophila willistoni]
Length = 638
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 22/142 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+RR+ V++ ++D+ I + + FS+ G ++ C+V D + +
Sbjct: 74 RIMWSQRDPSLRRSGVGNVFIKNLDRQIDNKAIYDTFSAFGNILSCKVALDEKGNSKGYG 133
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV F E A ++ + G +L V V F+PR E E+E+ +
Sbjct: 134 FVHFETEEAANTSIEKVNGMLLNGKKVYV-----------GKFIPRKEREKELGEKAKLF 182
Query: 216 --VYCTNIDKKVPQAEVKQFFE 235
VY N ++ ++K FFE
Sbjct: 183 TNVYVKNFTEEFDDEKLKDFFE 204
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ Q+I E L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSSAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R V+ N+D+++ + F
Sbjct: 63 MNFDLIRNKPIRIMWSQ------------RDPSLRRSGVGNVFIKNLDRQIDNKAIYDTF 110
Query: 235 EA 236
A
Sbjct: 111 SA 112
>gi|157114083|ref|XP_001657973.1| nucleolysin tia-1 [Aedes aegypti]
gi|108877443|gb|EAT41668.1| AAEL006710-PA [Aedes aegypti]
Length = 453
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
E++ +T+YV ++DQ++TE+ L LF G V C++ + S +AF+E+A+ A+
Sbjct: 3 EEAYPKTLYVGNLDQSVTEDLLCALFGQMGAVKSCKIIREASSD-PYAFIEYANHQSAQT 61
Query: 172 AL 173
AL
Sbjct: 62 AL 63
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 108 RAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFAD 165
+ + + S ++V D+ I E L F+ G++ +CR+ DP ++ +AFV F
Sbjct: 87 QPKTDTSQHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPQTLKSRGYAFVSFVK 146
Query: 166 EHGARAALN-LGGTMLGYYPVRV 187
+ A A+ + G LG +R
Sbjct: 147 KAEAENAIQMMNGQWLGSRSIRT 169
>gi|432851905|ref|XP_004067100.1| PREDICTED: embryonic polyadenylate-binding protein 2-like [Oryzias
latipes]
Length = 259
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 8/96 (8%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFA 164
+R D+ R+VYV ++D T + L F+ CG V + C R G P FA++EF+
Sbjct: 72 ERMDADNRSVYVGNVDYGATADELEIHFNGCGPVNRVTILCDRFSGHPKG---FAYIEFS 128
Query: 165 DEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPT 200
D A++A+ L TM ++VLP +T + ++ T
Sbjct: 129 DRSAAQSAVGLHETMFRGRVLKVLPKRTNMPGISTT 164
>gi|193648018|ref|XP_001950341.1| PREDICTED: nucleolysin TIAR-like [Acyrthosiphon pisum]
Length = 388
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
++S RT+YV ++D ++TEE L LF++ G V C+V +P S +AF+EF GA
Sbjct: 3 DESNPRTLYVGNLDPSVTEELLCALFTNIGPVNACKVIREPGSD-PYAFLEFDTHSGAAT 61
Query: 172 AL 173
AL
Sbjct: 62 AL 63
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 24/134 (17%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALN-L 175
++V D+ I L F+ G++ +CR+ DP ++ +AFV F + A A+N +
Sbjct: 98 IFVGDLSPEIETHTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKSDAENAINSM 157
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSE---------------DEREMCSRTVYCTN 220
G LG +R S P PR+ ++ + TVYC
Sbjct: 158 NGQWLGSRSIRTNWSTRKPPP------PRAPNKYSGYRAVTFDDVYNQSSPTNCTVYCGG 211
Query: 221 IDKKVPQAEVKQFF 234
I + + + V+Q F
Sbjct: 212 IVEGLTEELVEQVF 225
>gi|406606068|emb|CCH42541.1| Polyadenylate-binding protein 1 [Wickerhamomyces ciferrii]
Length = 787
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGA 169
E++ T+YV D+DQ +TE+ L+ LF+ + ++C P + L + +V F+ + A
Sbjct: 130 ENNTTVTLYVGDLDQKVTEKSLSSLFTKYESFLSAKLCYSPTTRLSLGYGYVNFSSDTDA 189
Query: 170 -RAALNLGGTMLGYYPVRVLP 189
RA +L T++ +R++P
Sbjct: 190 NRATEDLNYTLVANKEIRIMP 210
>gi|332374002|gb|AEE62142.1| unknown [Dendroctonus ponderosae]
Length = 634
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 71/148 (47%), Gaps = 25/148 (16%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D++I + + FS+ G ++ C+V D +
Sbjct: 77 IRGRPIRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQDENG 136
Query: 155 VLR-FAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+ + FV F E A ++ + G +L V V F+PR E E+E+
Sbjct: 137 TSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV-----------GRFIPRKEREKELG 185
Query: 213 SRT-----VYCTNIDKKVPQAEVKQFFE 235
+ VY N + + + +++ FE
Sbjct: 186 EKAKLFTNVYVKNFGEDLSEEQLRNMFE 213
Score = 42.0 bits (97), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDITEAMLFDKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+D+ +
Sbjct: 72 MNFDLIRGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDRSI 110
>gi|66810518|ref|XP_638966.1| hypothetical protein DDB_G0283687 [Dictyostelium discoideum AX4]
gi|60467589|gb|EAL65610.1| hypothetical protein DDB_G0283687 [Dictyostelium discoideum AX4]
Length = 727
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGA 169
E+S +RTV+VS + QNI E+ L+ LFS G V++ R+ D + +VEF+ +
Sbjct: 261 EESDQRTVFVSKLSQNIVEKDLSDLFSQAGTVLNVRLITDKVTKRMKGVGYVEFSQKEMV 320
Query: 170 RAALNLGGTML 180
A+ L G++L
Sbjct: 321 DKAIALSGSVL 331
>gi|70663933|emb|CAE02947.3| OSJNBa0014K14.19 [Oryza sativa Japonica Group]
Length = 657
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 15/123 (12%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADE-HGARAAL 173
+++YV D++ ++T+ +L LFS GQV+ RVC D S L +A+V F + ARA
Sbjct: 39 QSLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALE 98
Query: 174 NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQF 233
L L P+RV+ S R R S ++ N+DK + +
Sbjct: 99 LLNFAPLNGKPIRVMYSN------------RDPSSRRSGSANIFIKNLDKAIDHKTLHDT 146
Query: 234 FEA 236
F A
Sbjct: 147 FSA 149
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 9/97 (9%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
L+G+ R + R+ S RR+ +++ ++D+ I + L FS+ G ++ C+V D
Sbjct: 105 LNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMG 164
Query: 155 VLR-FAFVEFADEHGARAAL-NLGGTMLGYYPVRVLP 189
+ F FV++ A++A+ +L G ++ PV V P
Sbjct: 165 QSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGP 201
>gi|224060514|ref|XP_002300227.1| predicted protein [Populus trichocarpa]
gi|222847485|gb|EEE85032.1| predicted protein [Populus trichocarpa]
Length = 644
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 13/124 (10%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172
V ++YV D++ ++T+ +L LF+ GQVV RVC D S L + +V +++ A A
Sbjct: 23 VTTSLYVGDLEASVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARA 82
Query: 173 LNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
L ML + P+ P + +PT R+ + ++ N+DK + +
Sbjct: 83 LE----MLNFTPLNGSPIRVMYSHRDPTI-------RKSGAGNIFIKNLDKAIDHKALHD 131
Query: 233 FFEA 236
F A
Sbjct: 132 TFSA 135
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFA-DEHGARAALNLG 176
+Y+ ++D +I +E+L LFS G + C+V DP+ + R + FV F+ E +RA L +
Sbjct: 309 LYIKNLDDSIGDEKLKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMN 368
Query: 177 GTMLGYYPVRV 187
G ++ P+ V
Sbjct: 369 GKIVVSKPLYV 379
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 73/156 (46%), Gaps = 25/156 (16%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ ++R++ +++ ++D+ I + L FS+ G ++ C+V DP + +
Sbjct: 97 RVMYSHRDPTIRKSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDPSGQSKGYG 156
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDER---EMCSRT 215
FV+F E A+ A+ L G +L V V P FL + E + +M
Sbjct: 157 FVQFDSEEAAQKAIEKLNGMLLNDKQVYVGP-----------FLRKQERDTATDKMRFNN 205
Query: 216 VYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIIL 251
V+ N+ + + ++ + F GE T+ ++++
Sbjct: 206 VFVKNLSETTTEEDLNKTF-----GEFGTITSIVVM 236
>gi|400234898|gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
Length = 643
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV D+D N+T+ +L LF+ GQVV RVC D S L + +V + + + ARA
Sbjct: 28 SLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALEV 87
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T L P+R++ S +PT R + ++ N+DK + + F
Sbjct: 88 LNFTPLHGKPIRIMYSNR-----DPTI-------RRSGNGNIFIKNLDKAIDHKALHDTF 135
Query: 235 EA 236
A
Sbjct: 136 SA 137
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFA-DEHGARAALNLG 176
+Y+ ++D +I++++L LFS G + C+V DP V + + FV F+ E +RA +
Sbjct: 311 LYLKNLDDSISDDKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSTPEEASRALSEMN 370
Query: 177 GTMLGYYPVRV 187
G M+ P+ V
Sbjct: 371 GKMVVSKPLYV 381
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
L G+ R + R+ ++RR+ +++ ++D+ I + L FS+ G ++ C+V D
Sbjct: 93 LHGKPIRIMYSNRDPTIRRSGNGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAVDSSG 152
Query: 155 VLR-FAFVEF-ADEHGARAALNLGGTMLGYYPVRVLP 189
+ + FV++ +DE +A L G +L V V P
Sbjct: 153 QSKGYGFVQYDSDEAAQKAIEKLNGMLLNDKQVYVGP 189
>gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV D+D N+T+ +L LF+ GQVV RVC D S L + +V + + + ARA
Sbjct: 28 SLYVGDLDVNVTDSQLYDLFNQLGQVVSVRVCRDLTSQRSLGYGYVNYGNPQDAARALEV 87
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T L P+R++ S +PT R + ++ N+DK + + F
Sbjct: 88 LNFTPLHGKPIRIMYSNR-----DPTI-------RRSGNGNIFIKNLDKAIDHKALHDTF 135
Query: 235 EA 236
A
Sbjct: 136 SA 137
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLG 176
+Y+ ++D +I++E+L LFS G + C+V DP V + + FV F++ E +RA +
Sbjct: 311 LYIKNLDDSISDEKLKELFSPYGTITSCKVMRDPSGVSKGSGFVAFSNPEEASRALSEMN 370
Query: 177 GTMLGYYPVRV 187
G M+ P+ V
Sbjct: 371 GKMVVSKPLYV 381
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
L G+ R + R+ ++RR+ +++ ++D+ I + L FS+ G ++ C+V D
Sbjct: 93 LHGKPIRIMYSNRDPTIRRSGNGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVAVDSSG 152
Query: 155 VLR-FAFVEFADEHGARAAL-NLGGTMLGYYPVRVLP 189
+ + FV++ E A+ A+ L G +L V V P
Sbjct: 153 QSKGYGFVQYDSEEAAQKAIEKLNGMLLNDKQVYVGP 189
>gi|224062834|ref|XP_002300896.1| predicted protein [Populus trichocarpa]
gi|222842622|gb|EEE80169.1| predicted protein [Populus trichocarpa]
Length = 648
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 15/112 (13%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV--LRFAFVEFADEHGARAALN 174
R++YV D++ N+ E +L LFS VV RVC D + L +A+V F++ A A+
Sbjct: 33 RSLYVGDLEHNVKEGQLFDLFSQVAPVVSTRVCRDQAGLTSLGYAYVNFSNPQDAAKAME 92
Query: 175 -LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
L T L P+R++ F R R V+ N+D K+
Sbjct: 93 VLNFTPLNGKPIRIM------------FSHRDPTTRRSGHANVFIKNLDTKI 132
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFA-DEHGARAALNLG 176
+Y+ ++ I EERL LFS G + C+V D + + + FV F+ E +RA +
Sbjct: 317 LYLKNLGDTIDEERLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALSEMN 376
Query: 177 GTMLGYYPVRV 187
G M+G P+ V
Sbjct: 377 GKMIGKKPLYV 387
Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 53/97 (54%), Gaps = 9/97 (9%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
L+G+ R + R+ + RR+ V++ ++D I + L F+S G V+ C+V D +
Sbjct: 99 LNGKPIRIMFSHRDPTTRRSGHANVFIKNLDTKIDNKALYETFASFGPVLSCKVAVDNNG 158
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLP 189
+ + F++F +E A++A+N L G ++ V V P
Sbjct: 159 QSKGYGFIQFENEEDAQSAINRLNGMLVNDREVYVGP 195
>gi|218195166|gb|EEC77593.1| hypothetical protein OsI_16552 [Oryza sativa Indica Group]
Length = 659
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 15/123 (12%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADE-HGARAAL 173
+++YV D++ ++T+ +L LFS GQV+ RVC D S L +A+V F + ARA
Sbjct: 39 QSLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALE 98
Query: 174 NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQF 233
L L P+RV+ S R R S ++ N+DK + +
Sbjct: 99 LLNFAPLNGKPIRVMYSN------------RDPSSRRSGSANIFIKNLDKAIDHKTLHDT 146
Query: 234 FEA 236
F A
Sbjct: 147 FSA 149
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 87/211 (41%), Gaps = 27/211 (12%)
Query: 15 NNTNNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFA 74
N+ + K NN+ K T + LV +F + F IN
Sbjct: 210 NSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYGNITSAVI-MVGMDGKSRCFGFINFKSP 268
Query: 75 DDNKQSAIDNFNNNRRRRNNFNQGR-KRLSGRAFRAQR--EDSVRRT--------VYVSD 123
DD + A++ N + + GR ++ S R +R E S++ +Y+ +
Sbjct: 269 DDAAR-AVEELNGKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKN 327
Query: 124 IDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLGGTMLG 181
+D +I +++L LFS+ G++ C++ D + V + + FV F+ E ++A + G M+
Sbjct: 328 LDDSIGDDQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMIS 387
Query: 182 YYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
P+ V F R ED + M
Sbjct: 388 GKPLYV------------AFAQRKEDRKVML 406
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 9/97 (9%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
L+G+ R + R+ S RR+ +++ ++D+ I + L FS+ G ++ C+V D
Sbjct: 105 LNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMG 164
Query: 155 VLR-FAFVEFADEHGARAAL-NLGGTMLGYYPVRVLP 189
+ F FV++ A++A+ +L G ++ PV V P
Sbjct: 165 QSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGP 201
>gi|168057049|ref|XP_001780529.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668007|gb|EDQ54623.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 647
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 13/127 (10%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAA 172
V +VYV D++ N++E +L +FS G VV RVC D L +A+V + A A
Sbjct: 22 VSTSVYVGDLEHNVSEAQLYEIFSQTGPVVSIRVCRDLITRRSLGYAYVNYHSAQDATRA 81
Query: 173 LNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
L L L + PV P + +P+ R+ + ++ N+DK + +
Sbjct: 82 LEL----LNFTPVNGKPIRIMFSHRDPSL-------RKSGAANIFIKNLDKAIDNKALHD 130
Query: 233 FFEAACG 239
F A G
Sbjct: 131 TFSAFGG 137
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 14/135 (10%)
Query: 66 FSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGR-KRLSGR------AFRAQREDSVRR- 117
F +N ADD + A++ N ++ + GR ++ S R F +R+ + +
Sbjct: 245 FGFVNFELADDAAK-AVEALNGKKQDEKEWYVGRAQKKSEREAELRAKFEQERKSRIEKY 303
Query: 118 ---TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFA-DEHGARAA 172
+Y+ ++D + +E+L LF+ G + C+V DP R + FV F+ E RA
Sbjct: 304 QGVNLYLKNLDDAVDDEKLRELFAEYGTITSCKVMKDPQGQSRGSGFVAFSTPEEATRAV 363
Query: 173 LNLGGTMLGYYPVRV 187
+ M+G P+ V
Sbjct: 364 TEMNTKMVGSKPLYV 378
Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 70/147 (47%), Gaps = 23/147 (15%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
++G+ R + R+ S+R++ +++ ++D+ I + L FS+ G ++ C+V D
Sbjct: 90 VNGKPIRIMFSHRDPSLRKSGAANIFIKNLDKAIDNKALHDTFSAFGGILSCKVATDSSG 149
Query: 155 VLR-FAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSE-DEREM 211
+ + FV+F E A++A+ + G +L V V P F+ R E D
Sbjct: 150 QSKGYGFVQFEKEESAQSAIEKVNGMLLNDKQVFVGP-----------FVRRQERDLSGG 198
Query: 212 CSR--TVYCTNIDKKVPQAEVKQFFEA 236
S+ VY N+ + E+K+ F A
Sbjct: 199 VSKFNNVYVKNLGENTTDDELKKVFGA 225
>gi|91095037|ref|XP_975975.1| PREDICTED: similar to poly A binding protein isoform 4 [Tribolium
castaneum]
gi|270014772|gb|EFA11220.1| hypothetical protein TcasGA2_TC005185 [Tribolium castaneum]
Length = 607
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 71/148 (47%), Gaps = 25/148 (16%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D++I + + FS+ G ++ C+V D +
Sbjct: 77 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQDENG 136
Query: 155 VLR-FAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+ + FV F E A ++ + G +L V V F+PR E E+E+
Sbjct: 137 TSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV-----------GRFIPRKEREKELG 185
Query: 213 SRT-----VYCTNIDKKVPQAEVKQFFE 235
+ VY N + + + +++ FE
Sbjct: 186 EKAKLFTNVYVKNFGEDLTEEQLRTMFE 213
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FS+ G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHTDITEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+D+ +
Sbjct: 72 MNFDLIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDRSI 110
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 105 RAFRAQREDSVRR----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R F A + + + R +YV ++D I +ERL FS G + +V + + F F
Sbjct: 280 RRFEALKMERLNRYQGVNLYVKNLDDTIDDERLRKEFSPFGTITSAKVMMEDNRSKGFGF 339
Query: 161 VEFAD-EHGARAALNLGGTMLGYYPVRV 187
V F+ E +A + G ++G P+ V
Sbjct: 340 VCFSSPEEATKAVTEMNGRIVGSKPLYV 367
>gi|403162308|ref|XP_003890369.1| hypothetical protein PGTG_21014 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375172551|gb|EHS64663.1| hypothetical protein PGTG_21014 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1087
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 65/129 (50%), Gaps = 14/129 (10%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALN 174
+ +Y++ + + + E+ L LFS G++ RV D HS FAFVEF +E A+AAL+
Sbjct: 824 KELYITCLSKYVQEDDLRKLFSQFGEIKGVRVVLDQAGHSK-GFAFVEFQNEMSAKAALS 882
Query: 175 LGGTMLGYYPVRVLPSKTAILPV---NPTF-----LPRSEDEREMCSRTVYCTNIDKKVP 226
+ L + V S L + N TF L + D R SR+V +NI +
Sbjct: 883 MNNVELKKRRIGVTISSAKGLSLARKNTTFKDETKLSSATDHR---SRSVRVSNIAEGTQ 939
Query: 227 QAEVKQFFE 235
+A ++Q FE
Sbjct: 940 EALIQQAFE 948
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 65/136 (47%), Gaps = 12/136 (8%)
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP-HSVLRFAFVEFADEHGARAALN 174
R T+YV++ ++ +E + FS G + D R S RF +++F A AAL
Sbjct: 732 RSTLYVTNFPEDANDEWIRSKFSQFGSIFDVRWPSKRFKSTRRFCYIQFTSPASAEAALQ 791
Query: 175 LGGTMLGYYPVRVLP-SKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQF 233
L + + V P K ++L +PT ++ + + +Y T + K V + ++++
Sbjct: 792 L-------HNLEVSPKQKMSVLISDPT-RKQTRSDNHANEKELYITCLSKYVQEDDLRKL 843
Query: 234 FEAACGGEVRTLPCMI 249
F + GE++ + ++
Sbjct: 844 F--SQFGEIKGVRVVL 857
>gi|115459296|ref|NP_001053248.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|32490269|emb|CAE05558.1| OSJNBb0116K07.11 [Oryza sativa Japonica Group]
gi|113564819|dbj|BAF15162.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|215695125|dbj|BAG90316.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 659
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 15/123 (12%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADE-HGARAAL 173
+++YV D++ ++T+ +L LFS GQV+ RVC D S L +A+V F + ARA
Sbjct: 39 QSLYVGDLEASVTDSQLYELFSQAGQVMSVRVCRDISSRRSLGYAYVNFNNPVDAARALE 98
Query: 174 NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQF 233
L L P+RV+ S R R S ++ N+DK + +
Sbjct: 99 LLNFAPLNGKPIRVMYSN------------RDPSSRRSGSANIFIKNLDKAIDHKTLHDT 146
Query: 234 FEA 236
F A
Sbjct: 147 FSA 149
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 87/211 (41%), Gaps = 27/211 (12%)
Query: 15 NNTNNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFA 74
N+ + K NN+ K T + LV +F + F IN
Sbjct: 210 NSVDKTKFNNVFVKNLSESTTKEDLVKIFGAYGNITSAVI-MVGMDGKSRCFGFINFKSP 268
Query: 75 DDNKQSAIDNFNNNRRRRNNFNQGR-KRLSGRAFRAQR--EDSVRRT--------VYVSD 123
DD + A++ N + + GR ++ S R +R E S++ +Y+ +
Sbjct: 269 DDAAR-AVEELNGKKINDKEWYVGRAQKKSEREIELKRRFEQSMKDAADKYQGLNLYMKN 327
Query: 124 IDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLGGTMLG 181
+D +I +++L LFS+ G++ C++ D + V + + FV F+ E ++A + G M+
Sbjct: 328 LDDSIGDDQLCELFSNYGKITSCKIMRDANGVSKGSGFVAFSTREEASQALTEMNGKMIS 387
Query: 182 YYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
P+ V F R ED + M
Sbjct: 388 GKPLYV------------AFAQRKEDRKAML 406
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 9/97 (9%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
L+G+ R + R+ S RR+ +++ ++D+ I + L FS+ G ++ C+V D
Sbjct: 105 LNGKPIRVMYSNRDPSSRRSGSANIFIKNLDKAIDHKTLHDTFSAFGNILSCKVATDEMG 164
Query: 155 VLR-FAFVEFADEHGARAAL-NLGGTMLGYYPVRVLP 189
+ F FV++ A++A+ +L G ++ PV V P
Sbjct: 165 QSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGP 201
>gi|307178104|gb|EFN66931.1| Nucleolysin TIAR [Camponotus floridanus]
Length = 393
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
E+S RT+YV ++D +++E+ L LFS G V C++ +P + +AFVEF + A
Sbjct: 3 EESNPRTLYVGNLDASVSEDLLCALFSQIGAVKGCKIIREPGND-PYAFVEFTNHQSAAT 61
Query: 172 AL 173
AL
Sbjct: 62 AL 63
Score = 43.5 bits (101), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALN-L 175
++V D+ I + L F+ G++ +CR+ DP ++ +AFV F + A AA+N +
Sbjct: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKSEAEAAINAM 157
Query: 176 GGTMLGYYPVRV 187
G LG +R
Sbjct: 158 NGQWLGSRSIRT 169
>gi|356564176|ref|XP_003550332.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 654
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 15/114 (13%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAA 172
V ++YV D+DQN+ + +L LF+ GQVV RVC D L + +V F++ A A
Sbjct: 33 VTTSLYVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNFSNPQDAARA 92
Query: 173 LN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
L+ L T L +R++ S R R+ + ++ N+DK +
Sbjct: 93 LDVLNFTPLNNRSIRIMYSH------------RDPSLRKSGTANIFIKNLDKAI 134
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFA-DEHGARAALNLG 176
+Y+ ++D I++E+L +F+ G + C+V DP + R + FV F+ E RA +
Sbjct: 319 LYLKNLDDTISDEKLKEMFADYGTITSCKVMRDPTGISRGSGFVAFSTPEEATRALGEMN 378
Query: 177 GTMLGYYPVRV 187
G M P+ V
Sbjct: 379 GKMFAGKPLYV 389
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 72/157 (45%), Gaps = 27/157 (17%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ S+R++ +++ ++D+ I + L FSS G ++ C++ D + + +
Sbjct: 107 RIMYSHRDPSLRKSGTANIFIKNLDKAIDHKALHDTFSSFGLILSCKIATDASGLSKGYG 166
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV+F +E A+ A++ L G ++ V V FL R +D S+T
Sbjct: 167 FVQFDNEEAAQNAIDKLNGMLINDKQVYV-----------GHFL-RKQDRENALSKTKFN 214
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIIL 251
VY N+ + E+ F GE T+ +I+
Sbjct: 215 NVYVKNLSESTTDEELMINF-----GEYGTITSALIM 246
>gi|312371659|gb|EFR19788.1| hypothetical protein AND_21810 [Anopheles darlingi]
Length = 440
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 9/66 (13%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV----CGDPHSVLRFAFVEFADEH 167
E+S +T+YV ++D ++TEE L LFS G V C++ DP +AF+E+A
Sbjct: 3 EESYPKTLYVGNLDTSVTEELLCTLFSQMGTVKSCKIIREASNDP-----YAFIEYASHT 57
Query: 168 GARAAL 173
A+ AL
Sbjct: 58 SAQTAL 63
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALN-L 175
++V D+ I E L F+ G++ +CR+ DP ++ +AFV F + A A+ +
Sbjct: 98 IFVGDLSPEIETETLREAFAPFGEISNCRIVRDPQTLKSRGYAFVSFVKKAEAENAIQMM 157
Query: 176 GGTMLGYYPVRV 187
G LG +R
Sbjct: 158 NGQWLGSRSIRT 169
>gi|167518059|ref|XP_001743370.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778469|gb|EDQ92084.1| predicted protein [Monosiga brevicollis MX1]
Length = 400
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%)
Query: 102 LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFV 161
L+ + D +RRT+YV ++ + +E + + ++CG + R+ DP RF FV
Sbjct: 144 LAANVVETGKMDEMRRTLYVGNLALHTKQEDVVKVMATCGTIKQARIVMDPSRQARFCFV 203
Query: 162 EFADEHGARAALNLGGTML 180
EFA L L ++L
Sbjct: 204 EFAHIEDVATGLTLNNSLL 222
>gi|331219745|ref|XP_003322549.1| hypothetical protein PGTG_04086 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 680
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 65/129 (50%), Gaps = 14/129 (10%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALN 174
+ +Y++ + + + E+ L LFS G++ RV D HS FAFVEF +E A+AAL+
Sbjct: 412 KELYITCLSKYVQEDDLRKLFSQFGEIKGVRVVLDQAGHSK-GFAFVEFQNEMSAKAALS 470
Query: 175 LGGTMLGYYPVRVLPSKTAILPV---NPTF-----LPRSEDEREMCSRTVYCTNIDKKVP 226
+ L + V S L + N TF L + D R SR+V +NI +
Sbjct: 471 MNNVELKKRRIGVTISSAKGLSLARKNTTFKDETKLSSATDHR---SRSVRVSNIAEGTQ 527
Query: 227 QAEVKQFFE 235
+A ++Q FE
Sbjct: 528 EALIQQAFE 536
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 10/121 (8%)
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP-HSVLRFAFVEFADEHGARAALN 174
R T+YV++ ++ +E + FS G + D R S RF +++F A AAL
Sbjct: 320 RSTLYVTNFPEDANDEWIRSKFSQFGSIFDVRWPSKRFKSTRRFCYIQFTSPASAEAALQ 379
Query: 175 LGGTMLGYYPVRVLP-SKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQF 233
L + + V P K ++L +PT ++ + + +Y T + K V + ++++
Sbjct: 380 L-------HNLEVSPKQKMSVLISDPT-RKQTRSDNHANEKELYITCLSKYVQEDDLRKL 431
Query: 234 F 234
F
Sbjct: 432 F 432
>gi|356510461|ref|XP_003523956.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
gi|83853808|gb|ABC47841.1| poly(A)-binding protein [Glycine max]
Length = 630
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 26/136 (19%)
Query: 72 NFAD-DNKQSAIDNFNNNRRRRNNFNQGRKRLSGRA---------FRAQREDSVRRTV-- 119
NFA+ D+ A++ N NF+ G++ G+A + Q E + TV
Sbjct: 249 NFANVDDAAKAVEALNGK-----NFD-GKEWYVGKAQKKSERELELKGQHEQITKETVDK 302
Query: 120 ------YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFADEHGARAA 172
Y+ ++D ++ +E L LFS G + C+V DP+ + R + FV F+ GA A
Sbjct: 303 YHGTNLYIKNLDDSVGDEELMELFSEFGTITSCKVMRDPNGISRGSGFVSFSIAEGATRA 362
Query: 173 LN-LGGTMLGYYPVRV 187
L + G M+ P+ V
Sbjct: 363 LGEMNGKMVAGKPLYV 378
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++ + +L LF+ QVV R+C D L + +V F++ H A A++
Sbjct: 25 SLYVGDLHHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGYVNFSNAHDAAKAIDV 84
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T L +R++ + R R+ + V+ N+DK + + F
Sbjct: 85 LNFTPLNGKIIRIM------------YSIRDPSARKSGAANVFIKNLDKAIDHKALYDTF 132
Query: 235 EA 236
A
Sbjct: 133 SA 134
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 30/163 (18%)
Query: 102 LSGRAFRAQ---REDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
L+G+ R R+ S R++ V++ ++D+ I + L FS+ G ++ C+V D
Sbjct: 90 LNGKIIRIMYSIRDPSARKSGAANVFIKNLDKAIDHKALYDTFSAFGNILSCKVATDASG 149
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+ FV+F E A+ A++ L G ++ V V P FL R +D
Sbjct: 150 QSKGHGFVQFESEESAQNAIDKLNGMLINDKQVFVGP-----------FL-RKQDRESAL 197
Query: 213 SRT----VYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIIL 251
S T V+ N+ + +A++++ F GE + +++
Sbjct: 198 SGTKFNNVFVKNLLDSMTEADLERIF-----GEYGAITSAVVM 235
>gi|67539668|ref|XP_663608.1| hypothetical protein AN6004.2 [Aspergillus nidulans FGSC A4]
gi|40738563|gb|EAA57753.1| hypothetical protein AN6004.2 [Aspergillus nidulans FGSC A4]
gi|259479813|tpe|CBF70379.1| TPA: actin cytoskeleton protein (VIP1), putative (AFU_orthologue;
AFUA_2G10030) [Aspergillus nidulans FGSC A4]
Length = 270
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV---CGDPHSVLRFAFVEFADEHGAR 170
S R TV+VS+ID + +E+ + FS CG++V V G+P S L+ A V F + A+
Sbjct: 2 SDRTTVHVSNIDPSTSEKEVQDFFSFCGKIVSISVTPTSGEPGS-LKSATVTFEKDAAAK 60
Query: 171 AALNLGGTMLGYYPVRVLPSKT 192
AL L T LG V V ++T
Sbjct: 61 TALLLDQTQLGPSVVTVKAAQT 82
>gi|145352361|ref|XP_001420518.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580752|gb|ABO98811.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 223
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
+ +RRT +VS+ +T E++ LFS CG + +CR G + F F+EF A AA
Sbjct: 94 EELRRTAHVSNYPVGLTTEQVKQLFSFCGSIAECREGGPGKN---FCFIEFESNKEALAA 150
Query: 173 LNLGGTMLGYYPVRVLPSKTAILPVNP 199
L G +G +RV +KT L +NP
Sbjct: 151 CALNGMQVGGRNLRVELAKTPKL-LNP 176
>gi|198422488|ref|XP_002121866.1| PREDICTED: similar to poly(A) binding protein, cytoplasmic 4
(inducible form) [Ciona intestinalis]
Length = 270
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 26/160 (16%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ +++ ++D++I + L FS+ G ++ C+V + +
Sbjct: 78 IKGRPIRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVSCNENG 137
Query: 155 VLRFAFVEF-ADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
+ FV F +E G RA + G +L V V FL RSE ++M
Sbjct: 138 SKGYGFVHFETEEAGIRAIEKVNGMLLNDKKVFV-----------GKFLTRSERIKKMGE 186
Query: 214 RT-----VYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCM 248
R VY N K + ++ FE G V+++ M
Sbjct: 187 RVRQFTNVYIKNFGDKYDEKTLQVMFEKY--GVVKSVAVM 224
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 13/121 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 13 SLYVGDLHLDVTEAMLYEKFSQAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALD- 71
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
+ Y P++ P + +P+ R+ ++ N+DK + + F
Sbjct: 72 ---TMNYDPIKGRPIRIMWSQRDPSL-------RKSGVGNIFIKNLDKSIDNKALYDTFS 121
Query: 236 A 236
A
Sbjct: 122 A 122
>gi|297832034|ref|XP_002883899.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
gi|297329739|gb|EFH60158.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
Length = 655
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEF-ADEHGARAALN 174
++YV D+D N+T+ +L FS GQVV RVC D L + +V F + + ARA
Sbjct: 41 SLYVGDLDPNVTDSQLFDAFSQMGQVVSVRVCRDLATRRSLGYGYVNFTSPQDAARAIQE 100
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
L L PVRV+ S R R + ++ N+DK +
Sbjct: 101 LNYIPLNGKPVRVMYSH------------RDPSVRRSGAGNIFIKNLDKSI 139
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 14/135 (10%)
Query: 66 FSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGR-KRLSGRA--FRAQREDSVRRT---- 118
F +N ADD + A+++ N + GR ++ S R + Q E S++
Sbjct: 261 FGFVNFENADDAAK-AVESLNGKTFDDKEWFVGRAQKKSEREMELKVQYEQSLKEAADKF 319
Query: 119 ----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFA-DEHGARAA 172
+YV ++D ++++E+L LF+ G V C+V DP+ + R + FV F+ E +A
Sbjct: 320 QSSNLYVKNLDDSVSDEKLKELFTPYGTVTSCKVMRDPNGMSRGSGFVAFSTPEEATKAM 379
Query: 173 LNLGGTMLGYYPVRV 187
+ G M+ P+ V
Sbjct: 380 SEMSGKMIENKPLYV 394
>gi|224063493|ref|XP_002301171.1| predicted protein [Populus trichocarpa]
gi|222842897|gb|EEE80444.1| predicted protein [Populus trichocarpa]
Length = 657
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFA-DEHGARAALNLG 176
+Y+ ++D ++ +E+L LFS G + C+V DP + R + FV F+ E +RA L
Sbjct: 314 LYIKNLDDSVNDEKLKELFSDFGTITSCKVMHDPSGISRGSGFVAFSTPEEASRALAELN 373
Query: 177 GTMLGYYPVRVLPSK 191
G M+ P+ V P++
Sbjct: 374 GKMVVSKPLYVAPAQ 388
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 15/114 (13%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172
V ++YV D+D N+T+ +L LF+ GQVV RVC D + L + +V +++ A A
Sbjct: 29 VPTSLYVGDLDFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARA 88
Query: 173 LN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
L+ L T L P+R++ S R R+ ++ N+DK +
Sbjct: 89 LDVLNFTPLNNKPLRIMYSH------------RDPSIRKSGMANIFIKNLDKTI 130
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ S+R++ +++ ++D+ I + L FSS G ++ C+V D + +
Sbjct: 103 RIMYSHRDPSIRKSGMANIFIKNLDKTIDHKALHDTFSSFGNILSCKVATDASGQSKGYG 162
Query: 160 FVEFADEHGARAALNLGGTML 180
FV+F E A+ A++ ML
Sbjct: 163 FVQFDSEEAAQNAIDKLNGML 183
>gi|15128444|dbj|BAB62628.1| P0402A09.11 [Oryza sativa Japonica Group]
gi|20804433|dbj|BAB92130.1| P0455C04.5 [Oryza sativa Japonica Group]
Length = 990
Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 98 GRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR 157
R + G + + D +++ V +S++ +T + + LF CG+VVDC + H
Sbjct: 351 ARSIVVGSTDKTDKGDVLKKMVQISNLSPLLTVDHIKQLFGYCGKVVDCTITDSKH---- 406
Query: 158 FAFVEFADEHGARAALNLGGTMLGYYPVRV-----LPSKTAILPVN 198
A+VE++ + A AAL L +G P+ V LP KT + N
Sbjct: 407 IAYVEYSKQEEATAALALNNMDVGGRPLNVEMAKSLPPKTNLANSN 452
>gi|395829049|ref|XP_003787673.1| PREDICTED: polyadenylate-binding protein 1-like [Otolemur
garnettii]
Length = 611
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 16/133 (12%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ +R++ +++ +++ +I + L FS+ G ++ C+V D H F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEASIDNKALYDTFSTFGNILSCKVACDEHGSRGFGF 142
Query: 161 VEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCT 219
V F A+ A+N + G +L + V V F R E E E+ +R + T
Sbjct: 143 VHFETHEAAQHAINTMNGMLLNDHKVFV-----------GHFKSRREREVELGARAMEFT 191
Query: 220 NIDKKVPQAEVKQ 232
NI K QA+V +
Sbjct: 192 NIYVKNLQADVDE 204
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D + L +A++ F A AL+
Sbjct: 12 SLYVGDLHADVTEALLYEKFSPVGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSK 191
+ M+ P+R++ S+
Sbjct: 72 MNFEMIKGQPIRIMWSQ 88
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 105 RAFRAQREDSVRR----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R F ++D + R +YV ++D +I +E+L FS G + +V + F F
Sbjct: 278 RRFEQMKQDRMNRYQGVNLYVKNLDDSIDDEKLRKEFSPYGMITSAKVMTEGGHSKGFGF 337
Query: 161 VEFAD-EHGARAALNLGGTMLGYYPVRV 187
V F+ E +A + G ++G P+ V
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGTKPLYV 365
>gi|224105583|ref|XP_002313862.1| predicted protein [Populus trichocarpa]
gi|222850270|gb|EEE87817.1| predicted protein [Populus trichocarpa]
Length = 642
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 15/114 (13%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARA 171
V ++YV D++ N+T+ +L LF+ GQVV RVC D S L + +V +++ + ARA
Sbjct: 23 VTTSLYVGDLEANVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNYSNPQDAARA 82
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
L T + P+RV+ S R R+ + ++ N+DK +
Sbjct: 83 LEVLNFTPVNGSPIRVMYSH------------RDPSVRKSGAGNIFIKNLDKAI 124
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLG 176
+Y+ ++D +I +E++ LFS G + C+V DP+ + R + FV F+ E +RA L +
Sbjct: 309 LYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMN 368
Query: 177 GTMLGYYPVRV 187
G M+ P+ V
Sbjct: 369 GKMVASKPLYV 379
Score = 43.5 bits (101), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ SVR++ +++ ++D+ I + L FS G ++ C+V DP + +
Sbjct: 97 RVMYSHRDPSVRKSGAGNIFIKNLDKAIDHKALHDTFSVFGNILSCKVATDPSGQSKGYG 156
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRVLP 189
FV+F E A+ A+ L G +L V V P
Sbjct: 157 FVQFDSEEAAQKAIEKLNGMLLNDKQVYVGP 187
>gi|169622264|ref|XP_001804541.1| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
gi|187608896|sp|Q0U1G2.3|PABP_PHANO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|160704734|gb|EAT78222.2| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
Length = 744
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEF-AD 165
AQ+ ++YV ++D ++TE L LFSS GQV RVC D L +A+V + +
Sbjct: 40 AQQAHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSS 99
Query: 166 EHGARAALNLGGTMLGYYPVRVLPSK 191
E G +A L T++ P R++ S+
Sbjct: 100 EDGEKALEELNYTVIKGKPCRIMWSQ 125
>gi|321466794|gb|EFX77787.1| polyadenylate binding protein, cytoplasmic 1 [Daphnia pulex]
Length = 574
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 18/128 (14%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
L GR R +QR+ S+RR+ +++ ++D+ I + + FS+ G ++ C+V D
Sbjct: 78 LRGRPIRIMWSQRDPSLRRSGVGNIFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDEAG 137
Query: 155 VLR-FAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
+ + FV F E A A+ ML L K + F+PR + ERE+
Sbjct: 138 NSKGYGFVHFETEESAVNAITKVNGML-------LNGKKVFV---GRFIPRKDRERELGE 187
Query: 214 RTVYCTNI 221
+ Y TN+
Sbjct: 188 KAKYFTNV 195
Score = 40.4 bits (93), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +TE L FS+ G VV RVC D L +A+V F A AL+
Sbjct: 13 SLYVGDLHNEVTEAMLFEKFSTAGPVVSIRVCRDMITRRSLGYAYVNFQQPADAERALDS 72
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ +L P+R++ S+ R R ++ N+DK +
Sbjct: 73 MNFDVLRGRPIRIMWSQ------------RDPSLRRSGVGNIFIKNLDKTI 111
>gi|414876768|tpg|DAA53899.1| TPA: hypothetical protein ZEAMMB73_403376 [Zea mays]
gi|414876769|tpg|DAA53900.1| TPA: hypothetical protein ZEAMMB73_403376 [Zea mays]
Length = 924
Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats.
Identities = 34/101 (33%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 103 SGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVE 162
SG +A D+++RTV +S++ +T + + LF CG+VVDC V D ++ +VE
Sbjct: 327 SGSTNKADEADALKRTVQISNLSPLLTVDYIKQLFGFCGKVVDC-VMTDTKQIV---YVE 382
Query: 163 FADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLP 203
++ A AAL L +G P+ V +K A+ P LP
Sbjct: 383 YSKPEEATAALELNSKSVGGRPLNVEMAK-ALPPKANNNLP 422
>gi|91805911|gb|ABE65684.1| polyadenylate-binding protein [Arabidopsis thaliana]
Length = 267
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 13/123 (10%)
Query: 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAA 172
S R V+V ++D++I ++L +FS+ G+V+ C+V D V + + FV+F + A
Sbjct: 28 SGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTA 87
Query: 173 LNL-GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
N GT++ + V P F+ R + ++ VY N+ + A++K
Sbjct: 88 CNFHNGTLIRNQHIHVCP-----------FVSRGQWDKSRVFTNVYVKNLVETATDADLK 136
Query: 232 QFF 234
+ F
Sbjct: 137 RLF 139
>gi|10086463|gb|AAG12523.1|AC015446_4 Similar to Polyadenylate-Binding Proteins 2 and 5 [Arabidopsis
thaliana]
Length = 338
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 13/123 (10%)
Query: 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAA 172
S R V+V ++D++I ++L +FS+ G+V+ C+V D V + + FV+F + A
Sbjct: 99 SGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTA 158
Query: 173 LNL-GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
N GT++ + V P F+ R + ++ VY N+ + A++K
Sbjct: 159 CNFHNGTLIRNQHIHVCP-----------FVSRGQWDKSRVFTNVYVKNLVETATDADLK 207
Query: 232 QFF 234
+ F
Sbjct: 208 RLF 210
>gi|302811197|ref|XP_002987288.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
gi|302815025|ref|XP_002989195.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300143095|gb|EFJ09789.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300144923|gb|EFJ11603.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
Length = 567
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 108 RAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD 165
R ED +Y+ ++D I +E+L +FS+ G V C+V DP HS FV F+
Sbjct: 285 RKDTEDKSPTNLYLKNLDDGIDDEKLKDMFSAFGNVTSCKVMRDPLGHSKGS-GFVAFST 343
Query: 166 EHGA-RAALNLGGTMLGYYPVRV 187
A RA + G M+G P+ V
Sbjct: 344 SDAALRAVAQMNGKMIGSKPLYV 366
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 111 REDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFAD 165
R+ S+R++ ++V ++D++I + L LFS G+++ C++ D +V + FV+F
Sbjct: 93 RDPSIRKSGSGNLFVKNLDKSIDNKALHDLFSPYGKILSCKIALDVSNVSKGHGFVQFDT 152
Query: 166 EHGARAAL-NLGGTML 180
E A A+ + GT L
Sbjct: 153 EDAAHTAIEKINGTTL 168
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 19/137 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGA-RAALN 174
+YV D+D ++ E ++ +F G V+ R+C D L +A+V + + A RA
Sbjct: 16 ALYVGDLDPSVNEAQIFDIFKQIGNVMSVRLCRDMVTKRSLGYAYVNYNNTQDASRAIEE 75
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L + PVR++ F R R+ S ++ N+DK + + F
Sbjct: 76 LNFMPVNGKPVRIM------------FSYRDPSIRKSGSGNLFVKNLDKSIDNKALHDLF 123
Query: 235 EAACGGEVRTLPCMIIL 251
+ L C I L
Sbjct: 124 SPYG----KILSCKIAL 136
>gi|413918857|gb|AFW58789.1| hypothetical protein ZEAMMB73_983608 [Zea mays]
Length = 412
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADE-HGARAALN 174
++YV D++ +++ +L LFS GQVV RVC D S L +A+V +++ ARA
Sbjct: 35 SLYVGDLEGAVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNYSNPLDAARALEV 94
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L L P+RV+ S R R S ++ N+DK + + + F
Sbjct: 95 LNFAALNNKPIRVMYSN------------RDPSSRRSGSANIFIKNLDKTIDNKTLHETF 142
Query: 235 EA 236
+
Sbjct: 143 SS 144
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ S RR+ +++ ++D+ I + L FSS G ++ C+V D + F
Sbjct: 106 RVMYSNRDPSSRRSGSANIFIKNLDKTIDNKTLHETFSSFGTILSCKVAVDEAGQSKGFG 165
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRVLP 189
FV++ E A+ A+ +L G ++ PV V P
Sbjct: 166 FVQYDKEEAAQNAIKSLNGMLINDKPVFVGP 196
>gi|256075089|ref|XP_002573853.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044950|emb|CCD82498.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 688
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 57/103 (55%), Gaps = 6/103 (5%)
Query: 89 RRRRNNFNQGRKRLSGRAFRAQREDSVRRTV--YVSDIDQNITEERLAGLFSSCGQVVDC 146
+R+ + ++RL + RA+R+ S V YV ++D NI ++RL FS G +
Sbjct: 268 QRKEERQEELKQRLEKQ--RAERQSSYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSA 325
Query: 147 RVCGDPHSVLR-FAFVEFAD-EHGARAALNLGGTMLGYYPVRV 187
+V D ++ + F FV FA+ E ARA ++ GT++G P+ V
Sbjct: 326 KVMKDANNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYV 368
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 21/150 (14%)
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD---PHSVLRFAFVE 162
A A + + ++YV D+ +++ L FS G V+ RVC D HS L + +V
Sbjct: 2 AVSAASQGLMNSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHS-LGYGYVN 60
Query: 163 FADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNI 221
F D A AL L L P+R++ S+ R R+ ++ N+
Sbjct: 61 FEDPKHAEQALEVLNYESLMGRPIRIMWSQ------------RDPSLRKSGKGNIFIKNL 108
Query: 222 DKKVPQAEVKQFFEAACGGEVRTLPCMIIL 251
DK + Q E+ F R L C I++
Sbjct: 109 DKSIEQKELYDTFSFFG----RILSCKIVM 134
>gi|22329932|ref|NP_174676.2| poly(A) binding protein 1 [Arabidopsis thaliana]
gi|332193555|gb|AEE31676.1| poly(A) binding protein 1 [Arabidopsis thaliana]
Length = 407
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 70/143 (48%), Gaps = 20/143 (13%)
Query: 101 RLSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH 153
+L G+ R ++R+ S R + V+V ++D++I ++L +FS+ G+V+ C+V D
Sbjct: 8 KLKGKPMRIMFSERDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDAS 67
Query: 154 SVLR-FAFVEFADEHGARAALNL-GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREM 211
V + + FV+F + A N GT++ + V P F+ R + ++
Sbjct: 68 GVSKGYGFVQFYSDLSVYTACNFHNGTLIRNQHIHVCP-----------FVSRGQWDKSR 116
Query: 212 CSRTVYCTNIDKKVPQAEVKQFF 234
VY N+ + A++K+ F
Sbjct: 117 VFTNVYVKNLVETATDADLKRLF 139
Score = 43.5 bits (101), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFA-DEHGARAALNLG 176
+YV ++D ++ +L LFS G + C+V + + + FVEF+ E ++A L +
Sbjct: 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMN 284
Query: 177 GTMLGYYPVRV 187
G M+G P+ V
Sbjct: 285 GKMVGNKPIYV 295
>gi|256075085|ref|XP_002573851.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044948|emb|CCD82496.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 726
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 108 RAQREDSVRRTV--YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFA 164
RA+R+ S V YV ++D NI ++RL FS G + +V D ++ + F FV FA
Sbjct: 285 RAERQSSYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCFA 344
Query: 165 D-EHGARAALNLGGTMLGYYPVRV 187
+ E ARA ++ GT++G P+ V
Sbjct: 345 NPEQAARAVTDMNGTIIGSKPLYV 368
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 21/150 (14%)
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD---PHSVLRFAFVE 162
A A + + ++YV D+ +++ L FS G V+ RVC D HS L + +V
Sbjct: 2 AVSAASQGLMNSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHS-LGYGYVN 60
Query: 163 FADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNI 221
F D A AL L L P+R++ S+ R R+ ++ N+
Sbjct: 61 FEDPKHAEQALEVLNYESLMGRPIRIMWSQ------------RDPSLRKSGKGNIFIKNL 108
Query: 222 DKKVPQAEVKQFFEAACGGEVRTLPCMIIL 251
DK + Q E+ F R L C I++
Sbjct: 109 DKSIEQKELYDTFSFFG----RILSCKIVM 134
>gi|294886819|ref|XP_002771869.1| RNA-binding protein, putative [Perkinsus marinus ATCC 50983]
gi|239875669|gb|EER03685.1| RNA-binding protein, putative [Perkinsus marinus ATCC 50983]
Length = 420
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN 174
++RTVYVS + +T E + G+F G++ + + P+ +FA VEF +E A+ A+
Sbjct: 136 LKRTVYVSGLANQVTLEEVQGMFGHFGEIKESSIDVSPYDQCQFALVEFQNEAAAQEAIR 195
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPT 200
+G VRV SK + PT
Sbjct: 196 VGEIPYRGRVVRVEKSKETVKLYPPT 221
Score = 37.0 bits (84), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 59/152 (38%), Gaps = 35/152 (23%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGG 177
T++V ++ E+ L LFS +V++ ++ P + LR+A V+F +G AA +L G
Sbjct: 7 TIFVRNLAVQANEQNLRDLFSRLDRVINVQIMTFPGTSLRYARVDFGTSNGVTAAHSLNG 66
Query: 178 TMLGYYPVRV-----------------LP------------SKTAILP------VNPTFL 202
P+ V LP S T+I P
Sbjct: 67 QPFHGVPLTVSVTDPVAANASATAAAPLPNLGVPAAQQLTASVTSIRPQPGVGVTTVGGG 126
Query: 203 PRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
R E + RTVY + + +V EV+ F
Sbjct: 127 VRDSGEEMILKRTVYVSGLANQVTLEEVQGMF 158
>gi|256075087|ref|XP_002573852.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044949|emb|CCD82497.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 724
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 108 RAQREDSVRRTV--YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFA 164
RA+R+ S V YV ++D NI ++RL FS G + +V D ++ + F FV FA
Sbjct: 285 RAERQSSYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCFA 344
Query: 165 D-EHGARAALNLGGTMLGYYPVRV 187
+ E ARA ++ GT++G P+ V
Sbjct: 345 NPEQAARAVTDMNGTIIGSKPLYV 368
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 21/150 (14%)
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD---PHSVLRFAFVE 162
A A + + ++YV D+ +++ L FS G V+ RVC D HS L + +V
Sbjct: 2 AVSAASQGLMNSSLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRHS-LGYGYVN 60
Query: 163 FADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNI 221
F D A AL L L P+R++ S+ R R+ ++ N+
Sbjct: 61 FEDPKHAEQALEVLNYESLMGRPIRIMWSQ------------RDPSLRKSGKGNIFIKNL 108
Query: 222 DKKVPQAEVKQFFEAACGGEVRTLPCMIIL 251
DK + Q E+ F R L C I++
Sbjct: 109 DKSIEQKELYDTFSFFG----RILSCKIVM 134
>gi|255538402|ref|XP_002510266.1| nuclear acid binding protein, putative [Ricinus communis]
gi|223550967|gb|EEF52453.1| nuclear acid binding protein, putative [Ricinus communis]
Length = 443
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 16/91 (17%)
Query: 103 SGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV-----CGDPHSVLR 157
SG+AF+A DS T++V +D N+T+E L FS G++V ++ CG
Sbjct: 299 SGQAFQAD-GDSTNTTIFVGGLDPNVTDEDLKQPFSQYGEIVSVKIPVGKGCG------- 350
Query: 158 FAFVEFADEHGARAALN-LGGTMLGYYPVRV 187
FV+FA A AL L GT++G VR+
Sbjct: 351 --FVQFASRSNAEEALQKLNGTVIGKQTVRL 379
>gi|346472667|gb|AEO36178.1| hypothetical protein [Amblyomma maculatum]
Length = 101
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD 165
A + Q D RT+YV ++D +TEE L +F GQV C++ +P + + FVEF+D
Sbjct: 2 ANKDQGNDCQPRTLYVGNLDIAVTEELLVAVFGQMGQVKGCKIIHEPGND-PYCFVEFSD 60
Query: 166 EHGARAAL 173
A +AL
Sbjct: 61 HQSAASAL 68
>gi|365192966|gb|AEW68341.1| putative nuclear acid binding protein [Medicago sativa]
Length = 409
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Query: 109 AQRE-DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEH 167
AQ E D T++V ++D N+T+E L +F+ G++V ++ S R FV+FAD
Sbjct: 263 AQNENDPNNTTIFVGNLDPNVTDEHLKQVFTQYGELVHVKIP----SGKRCGFVQFADRS 318
Query: 168 GARAALN-LGGTMLGYYPVRV 187
A AL L GT+LG VR+
Sbjct: 319 SAEEALRVLNGTLLGGQNVRL 339
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 29/155 (18%)
Query: 95 FNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSS------CGQVVDCRV 148
F+ G KR +DS T++V D+ ++++ L +F + +VV R
Sbjct: 152 FSSGEKR---------HDDSPDYTIFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRN 202
Query: 149 CGDPHSVLRFAFVEFADE-HGARAALNLGGTMLGYYPVRVLPSKTAILPV--------NP 199
G + FV FADE RA + G + P+R+ P+ L NP
Sbjct: 203 TGRSKG---YGFVRFADESEQMRAMTEMQGVLCSTRPMRIGPASNKNLGTQTSKASYQNP 259
Query: 200 TFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+++E + + T++ N+D V +KQ F
Sbjct: 260 QG--GAQNENDPNNTTIFVGNLDPNVTDEHLKQVF 292
>gi|351706751|gb|EHB09670.1| Polyadenylate-binding protein 4-like protein [Heterocephalus
glaber]
Length = 370
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 19/128 (14%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ +RR+ V+V ++D+++ + L FS G+++ +V D
Sbjct: 76 IKGRPIRLMWSQRDACLRRSGIGNVFVKNLDRSVDNKTLYEHFSGFGKILSSKVMSDDQG 135
Query: 155 VLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
+AFV F + A A+ + G ++ PV V P F PR + E E+ S
Sbjct: 136 SKGYAFVHFQSQSAANCAIEQMNGKVINDRPVFVAP-----------FKPRKDREAELRS 184
Query: 214 RTVYCTNI 221
R TN+
Sbjct: 185 RASEFTNV 192
>gi|449547299|gb|EMD38267.1| hypothetical protein CERSUDRAFT_113433 [Ceriporiopsis subvermispora
B]
Length = 679
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 17/144 (11%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GRA R +QR+ ++R+T +++ ++D+ I + L F++ G V+ C+V D H
Sbjct: 114 IKGRACRIMWSQRDPALRKTGQGNIFIKNLDEGIDNKALHDTFAAFGNVLSCKVATDEHG 173
Query: 155 VLR-FAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
+ + FV + A A+ ML L K + + + R EM +
Sbjct: 174 RSKGYGFVHYETAEAADTAIKAVNGML-------LNDKKVYVGPHISRKERQSKIEEMKA 226
Query: 214 R--TVYCTNIDKKVPQAEVKQFFE 235
+ VY NID +V E +Q FE
Sbjct: 227 QFTNVYVKNIDAEVTDEEFRQLFE 250
>gi|357473893|ref|XP_003607231.1| 28 kDa ribonucleoprotein [Medicago truncatula]
gi|355508286|gb|AES89428.1| 28 kDa ribonucleoprotein [Medicago truncatula]
Length = 643
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 9/156 (5%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGAR 170
E+S +T++V ++ ++ + F CG+VVD R D + F VEFA A+
Sbjct: 379 ENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAAQ 438
Query: 171 AALNLGGTMLGYYPVR--VLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
+AL + G L VR + + A P N + R S+TV+ DK + +
Sbjct: 439 SALEMNGQELLQRAVRLDLARERGAFTPNNNSNYSAQSGGRGQ-SQTVFVRGFDKNLGED 497
Query: 229 EVK----QFFEAACGGEVR-TLPCMIILFYFHLFIY 259
E++ + F CG R ++P Y F Y
Sbjct: 498 EIRAKLMEHFGGTCGEPTRVSIPKDFESGYSKGFAY 533
>gi|226496737|ref|NP_001151785.1| LOC100285420 [Zea mays]
gi|195649671|gb|ACG44303.1| polyadenylate-binding protein 2 [Zea mays]
gi|414586484|tpg|DAA37055.1| TPA: polyadenylate-binding protein 2 [Zea mays]
Length = 660
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADE-HGARAALN 174
++YV D++ ++++ +L LFS GQVV RVC D S L +A+V F + ARA
Sbjct: 41 SLYVGDLEGSVSDSQLYELFSQAGQVVSVRVCRDVTSRRSLGYAYVNFNNPLDAARALEV 100
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L L P+RV+ S R R S ++ N+DK + + + F
Sbjct: 101 LNFAPLNNKPIRVMYSN------------RDPSSRRSGSANIFIKNLDKMIDNKSLHETF 148
Query: 235 EA 236
+
Sbjct: 149 SS 150
Score = 42.0 bits (97), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ S RR+ +++ ++D+ I + L FSS G ++ C+V D + F
Sbjct: 112 RVMYSNRDPSSRRSGSANIFIKNLDKMIDNKSLHETFSSFGTILSCKVAMDEGGQSKGFG 171
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRVLP 189
FV++ E A+ A+ +L G ++ PV V P
Sbjct: 172 FVQYEKEEAAQNAIKSLNGMLINDKPVFVGP 202
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 14/96 (14%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLG 176
+Y+ ++D +I +++L LFS+ G++ C+V D + + + + FV F+ E ++A +
Sbjct: 324 LYLKNLDDSIGDDQLRELFSNFGKITSCKVMRDQNGLSKGSGFVAFSTREEASQALTEMN 383
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
G M+ P+ V F R ED + M
Sbjct: 384 GKMISGKPLYV------------AFAQRKEDRKAML 407
>gi|429329983|gb|AFZ81742.1| RNA recognition motif domain-containing protein [Babesia equi]
Length = 1110
Score = 48.1 bits (113), Expect = 0.004, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFS-SCGQVVDCRVCGDPHSVLR-FAFVEFADEHGA 169
+D RTVY++++ TE+ L+ F+ SCG V ++C D R + FVEF DE A
Sbjct: 990 KDKTSRTVYITNLSYKTTEDELSSFFTKSCGPVKAVQICLDRMGKSRGYGFVEFCDERTA 1049
Query: 170 RAALNLGGTMLGYYPVRVLPSKTAILPVNP 199
AL L +L + V S AI +P
Sbjct: 1050 MDALLLSTLVLDDREILVSRSNRAIYKDSP 1079
>gi|15220241|ref|NP_175181.1| RNA-binding protein 47C' [Arabidopsis thaliana]
gi|75337808|sp|Q9SX80.1|R47CP_ARATH RecName: Full=Polyadenylate-binding protein RBP47C';
Short=Poly(A)-binding protein RBP47C'; AltName:
Full=RNA-binding protein 47C'; Short=AtRBP47C prime;
Short=AtRBP47C'
gi|5668811|gb|AAD46037.1|AC007519_22 Contains 3 PF|00076 RNA recognition motif domains. EST gb|T20424
comes from this gene [Arabidopsis thaliana]
gi|110743035|dbj|BAE99410.1| hypothetical protein [Arabidopsis thaliana]
gi|124301030|gb|ABN04767.1| At1g47500 [Arabidopsis thaliana]
gi|332194057|gb|AEE32178.1| RNA-binding protein 47C' [Arabidopsis thaliana]
Length = 434
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 15/104 (14%)
Query: 90 RRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV- 148
R+ N + Q + AF D++ T++V +D ++T+E L FS G++V ++
Sbjct: 279 RKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIP 338
Query: 149 ----CGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRV 187
CG FV+F + A AL L GT++G VR+
Sbjct: 339 VGKGCG---------FVQFVNRPNAEEALEKLNGTVIGKQTVRL 373
>gi|91094515|ref|XP_971941.1| PREDICTED: similar to poly A binding protein [Tribolium castaneum]
gi|270000753|gb|EEZ97200.1| hypothetical protein TcasGA2_TC004389 [Tribolium castaneum]
Length = 565
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 71/148 (47%), Gaps = 25/148 (16%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
L G+ R +QR+ S+R++ V++ ++D++I + + FS+ G ++ C+V D
Sbjct: 78 LKGKPIRIMWSQRDPSLRKSGIGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVAIDDDG 137
Query: 155 VLR-FAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
V + + FV F A A+ + G +L V V F+PR+E E+E+
Sbjct: 138 VSKGYGFVHFESIEAANKAIEKVNGMLLNGKKVYV-----------GKFIPRAEREKEIG 186
Query: 213 SRT-----VYCTNIDKKVPQAEVKQFFE 235
++ VY N + + Q ++ F+
Sbjct: 187 EKSKKYTNVYVKNFGRNLTQEQLYDLFK 214
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS GQ++ RVC D + L +A+V F+ A L+
Sbjct: 13 SLYVGDLHPDVTEALLYEKFSPAGQILSLRVCRDSRTKQSLGYAYVNFSQTIEAERVLDT 72
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ +L P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 73 MNFDLLKGKPIRIMWSQ------------RDPSLRKSGIGNVFIKNLDKSIDNKAMYDTF 120
Query: 235 EA 236
A
Sbjct: 121 SA 122
Score = 40.8 bits (94), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 8/84 (9%)
Query: 98 GRKRLSGRAF-RAQREDSVRRT------VYVSDIDQNITEERLAGLFSSCGQVVDCRVCG 150
G+K G+ RA+RE + VYV + +N+T+E+L LF + G + C V
Sbjct: 167 GKKVYVGKFIPRAEREKEIGEKSKKYTNVYVKNFGRNLTQEQLYDLFKNYGTITSCVVMA 226
Query: 151 DPHSVLR-FAFVEFADEHGARAAL 173
+P + F F+ F + A A+
Sbjct: 227 NPDGTSKGFGFIAFEEPESAEKAV 250
>gi|168018573|ref|XP_001761820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686875|gb|EDQ73261.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 439
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 15/125 (12%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAA 172
V ++YV D++ N++E +L +FS GQVV RVC D L +++V + + A A
Sbjct: 22 VSTSLYVGDLEPNVSEAQLYEMFSQVGQVVSIRVCRDLITRRSLGYSYVNYNNAQDATRA 81
Query: 173 LNLGG-TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
L L T + P+R++ F R R+ + ++ N+DK + +
Sbjct: 82 LELLNFTGVNGKPIRIM------------FSHRDPSIRKSGTANIFIKNLDKSIDNKALH 129
Query: 232 QFFEA 236
F A
Sbjct: 130 DTFAA 134
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 23/120 (19%)
Query: 107 FRAQREDSVRR----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FV 161
F +R++ + + +Y+ ++D + +E++ LF+ G + C+V D + + FV
Sbjct: 292 FEQERKERIEKYQGVNLYLKNLDDTVDDEKIRELFAEYGTITSCKVMRDHQGQSKGSGFV 351
Query: 162 EFAD-EHGARAALNLGGTMLGYYPVRVLPS-----------------KTAILPVNPTFLP 203
F+ + RA + G M+G P+ V + +T + P PT LP
Sbjct: 352 AFSSPDEATRAVTEMNGKMVGNKPLYVALAQRKEERRMRLQAAFAQMRTHVGPAVPTSLP 411
>gi|357480263|ref|XP_003610417.1| RNA-binding protein [Medicago truncatula]
gi|355511472|gb|AES92614.1| RNA-binding protein [Medicago truncatula]
Length = 411
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Query: 109 AQRE-DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEH 167
AQ E D T++V ++D N+T+E L +F+ G++V ++ S R FV+FAD
Sbjct: 265 AQNENDPNNTTIFVGNLDPNVTDEHLKQVFTQYGELVHVKIP----SGKRCGFVQFADRS 320
Query: 168 GARAALN-LGGTMLGYYPVRV 187
A AL L GT+LG VR+
Sbjct: 321 SAEEALRVLNGTLLGGQNVRL 341
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 29/155 (18%)
Query: 95 FNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSS------CGQVVDCRV 148
F+ G KR +DS T++V D+ ++++ L +F + +VV R
Sbjct: 154 FSSGEKR---------HDDSPDYTIFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRT 204
Query: 149 CGDPHSVLRFAFVEFADE-HGARAALNLGGTMLGYYPVRVLPSKTAILPV--------NP 199
G + FV FADE RA + G + P+R+ P+ L NP
Sbjct: 205 TG---RTKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRIGPASNKNLGTQTSKASYQNP 261
Query: 200 TFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+++E + + T++ N+D V +KQ F
Sbjct: 262 QG--GAQNENDPNNTTIFVGNLDPNVTDEHLKQVF 294
>gi|342184931|emb|CCC94413.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 374
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 120 YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTM 179
Y+ +ID+++T E L +FS CG ++DC + G R+ F++FA E A+ G
Sbjct: 12 YIGNIDRSVTLEVLRQVFSQCGVIIDCSLNGRDEDPYRYGFIDFATEDDRARAMKYNGFT 71
Query: 180 LGYYPVRVLPSKTAI 194
L ++V SK +
Sbjct: 72 LAGRKIKVGISKGNV 86
>gi|254567738|ref|XP_002490979.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|238030776|emb|CAY68699.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|328352488|emb|CCA38887.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Komagataella pastoris CBS 7435]
Length = 626
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 70/143 (48%), Gaps = 22/143 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+RR+ +++ ++D I + L FSS G+V+ C+V D + + F
Sbjct: 124 RLMWSQRDPSLRRSGSGNIFIKNLDPAIENKTLHDTFSSFGKVLSCKVATDENGNSKGFG 183
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDE---REMCSR- 214
FV + + A+AA+ N+ G +L + V P L + + E +EM
Sbjct: 184 FVHYESDEAAQAAIENINGMLLNGREIYVGP-----------HLAKKDRESRFQEMIKNY 232
Query: 215 -TVYCTNIDKKVPQAEVKQFFEA 236
V+ N D + + E+++ FE+
Sbjct: 233 TNVFVKNFDTESTEDELRELFES 255
>gi|71749032|ref|XP_827855.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70833239|gb|EAN78743.1| RNA-binding protein, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|261333587|emb|CBH16582.1| RNA-binding protein, putative [Trypanosoma brucei gambiense DAL972]
Length = 377
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 120 YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTM 179
Y+ +ID+++T E L +FS CG +VDC + G R+ F++FA E A+ G
Sbjct: 12 YIGNIDRSVTLEVLRQVFSQCGTIVDCSLNGRDEDPYRYGFIDFATEDDRARAMKYNGFT 71
Query: 180 LGYYPVRVLPSK 191
L ++V SK
Sbjct: 72 LAGRKIKVGISK 83
>gi|255718749|ref|XP_002555655.1| KLTH0G14344p [Lachancea thermotolerans]
gi|238937039|emb|CAR25218.1| KLTH0G14344p [Lachancea thermotolerans CBS 6340]
Length = 587
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALNLG 176
+YV ++D ++TE L LFS G V RVC D + L +A+V F D + R A+
Sbjct: 42 LYVGELDPSVTEALLYDLFSPIGSVSSIRVCRDAITKTSLGYAYVNFHDHNAGRTAIE-- 99
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNI 221
L Y P++ P + +P+ R+ S V+ N+
Sbjct: 100 --KLNYTPIKGRPCRIMWSQRDPSL-------RKKGSGNVFIKNL 135
>gi|405970795|gb|EKC35670.1| Polyadenylate-binding protein 1 [Crassostrea gigas]
Length = 462
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C++ D H
Sbjct: 82 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIVCDEHG 141
Query: 155 VLRFAFVEFADEHGARAALNLGGTML 180
+ FV F E AR A+ ML
Sbjct: 142 SRGYGFVHFETEEAARIAIEKVNGML 167
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS+ G V+ RVC D L +A+V F A AL+
Sbjct: 17 SLYVGDLHPDVTEAMLFEKFSTAGPVLPIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ + P+R++ S+ R R+ V+ N+DK +
Sbjct: 77 MNFDTIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 115
>gi|388507756|gb|AFK41944.1| unknown [Medicago truncatula]
Length = 411
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Query: 109 AQRE-DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEH 167
AQ E D T++V ++D N+T+E L +F+ G++V ++ S R FV+FAD
Sbjct: 265 AQNENDPNNTTIFVGNLDPNVTDEHLKQVFTQYGELVHVKIP----SGKRCGFVQFADRS 320
Query: 168 GARAALN-LGGTMLGYYPVRV 187
A AL L GT+LG VR+
Sbjct: 321 SAEEALRVLNGTLLGGQNVRL 341
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 29/155 (18%)
Query: 95 FNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSS------CGQVVDCRV 148
F+ G KR +DS T++V D+ ++++ L +F + +VV R
Sbjct: 154 FSSGEKR---------HDDSPDYTIFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRT 204
Query: 149 CGDPHSVLRFAFVEFADE-HGARAALNLGGTMLGYYPVRVLPSKTAILPV--------NP 199
G + FV FADE RA + G + P+R+ P+ L NP
Sbjct: 205 TG---RTKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRIGPASNKNLGTQTSKASYQNP 261
Query: 200 TFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+++E + + T++ N+D V +KQ F
Sbjct: 262 QG--GAQNENDPNNTTIFVGNLDPNVTDEHLKQVF 294
>gi|396492663|ref|XP_003843853.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
gi|312220433|emb|CBY00374.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
Length = 747
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEF-AD 165
AQ+ ++YV ++D ++TE L LFSS GQV RVC D L +A+V + +
Sbjct: 39 AQQAHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSS 98
Query: 166 EHGARAALNLGGTMLGYYPVRVLPSK 191
E G +A L T++ P R++ S+
Sbjct: 99 EDGEKALEELNYTVIKGKPCRIMWSQ 124
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 18/140 (12%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D H + +
Sbjct: 119 RIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYG 178
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRV---LPSKTAILPVNPTFLPRSEDEREMCSRT 215
FV + A A+ ++ G +L V V +P K + +E +
Sbjct: 179 FVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKF---------EEMKANFTN 229
Query: 216 VYCTNIDKKVPQAEVKQFFE 235
+Y NID V E + FE
Sbjct: 230 IYVKNIDLDVTDDEFRDLFE 249
>gi|118486179|gb|ABK94932.1| unknown [Populus trichocarpa]
Length = 408
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFA-DEHGARAALNLG 176
+Y+ ++D +I +E++ LFS G + C+V DP+ + R + FV F+ E +RA L +
Sbjct: 74 LYIKNLDDSIGDEKIKELFSPFGTITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMN 133
Query: 177 GTMLGYYPVRV 187
G M+ P+ V
Sbjct: 134 GKMVASKPLYV 144
>gi|242021493|ref|XP_002431179.1| nucleolysin TIA-1, putative [Pediculus humanus corporis]
gi|212516428|gb|EEB18441.1| nucleolysin TIA-1, putative [Pediculus humanus corporis]
Length = 403
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
E++ +T+YV ++D ++TE+ L LFS G V C++ +P++ +AFVEF + A
Sbjct: 5 EENYPKTLYVGNLDVSVTEDLLCTLFSQIGSVKGCKIIREPNND-PYAFVEFVNHQAAST 63
Query: 172 AL 173
AL
Sbjct: 64 AL 65
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
Query: 108 RAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFAD 165
+ +++ S ++V D+ I L F+ G++ +CR+ DP ++ +AFV F
Sbjct: 89 QPKQDTSSHHHIFVGDLSPEIEMHTLREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVK 148
Query: 166 EHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTV 216
+ A +A++ + G LG +R S P PR+E R+ ++ V
Sbjct: 149 KAEAESAIHAMNGQWLGNRSIRTNWSTRKPPP------PRTERSRQGNAKAV 194
>gi|332029721|gb|EGI69600.1| Nucleolysin TIAR [Acromyrmex echinatior]
Length = 393
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
E+S RT+YV ++D +++E+ L LFS G V C++ +P + +AFVEF + A
Sbjct: 3 EESNPRTLYVGNLDTSVSEDLLCALFSQIGAVKGCKIIREPGND-PYAFVEFTNHQCAAT 61
Query: 172 AL 173
AL
Sbjct: 62 AL 63
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALN-L 175
++V D+ I + L F+ G++ +CR+ DP ++ +AFV F + A AA+N +
Sbjct: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKSEAEAAINAM 157
Query: 176 GGTMLGYYPVRV 187
G LG +R
Sbjct: 158 NGQWLGSRSIRT 169
>gi|405977322|gb|EKC41780.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 646
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C++ D H
Sbjct: 82 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIVCDEHG 141
Query: 155 VLRFAFVEFADEHGARAALNLGGTML 180
+ FV F E AR A+ ML
Sbjct: 142 SRGYGFVHFETEEAARIAIEKVNGML 167
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 21/114 (18%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D+ ++TE L FS+ G V+ RVC D L +A+V F A AL+
Sbjct: 17 SLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD- 75
Query: 176 GGTM----LGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
TM + P+R++ S+ R R+ V+ N+DK +
Sbjct: 76 --TMNFDTIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 115
>gi|388494114|gb|AFK35123.1| unknown [Medicago truncatula]
Length = 425
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 16/103 (15%)
Query: 91 RRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV-- 148
R+++ +Q + +G + +++ DS T++V +D N+T+E L FS G++ ++
Sbjct: 270 RKSSGHQPGGQTNGTSSQSE-ADSTNTTIFVGGLDSNVTDEDLKQTFSQYGEIASVKIPV 328
Query: 149 ---CGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRV 187
CG FV+FA+ + A AL L GTM+G VR+
Sbjct: 329 GKGCG---------FVQFANRNNAEEALQKLNGTMIGKQTVRL 362
>gi|294893752|ref|XP_002774629.1| RNA-binding protein, putative [Perkinsus marinus ATCC 50983]
gi|239880022|gb|EER06445.1| RNA-binding protein, putative [Perkinsus marinus ATCC 50983]
Length = 277
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN 174
++RTVYVS + +T E + G+F G++ + + P+ +FA VEF +E A+ A+
Sbjct: 136 LKRTVYVSGLANQVTLEEVRGMFGHFGEIKESSIDVSPYDQCQFALVEFQNEAAAQEAIR 195
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPT 200
+G VRV SK + PT
Sbjct: 196 VGEIPYRGRVVRVEKSKETVKLYPPT 221
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 35/152 (23%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGG 177
T++V ++ E+ L LFS +V++ ++ P + LR+A V+F +G AA +L G
Sbjct: 7 TIFVRNLAVQANEQNLRDLFSRLDRVLNVQIMTFPGTSLRYARVDFGTSNGVTAAHSLNG 66
Query: 178 --------TMLGYYPVRVLPSKTAILPVNPTFLP-------------------------- 203
T+ PV S TA+ P+ +P
Sbjct: 67 QPFHGVPLTVSVTDPVDANASATAVAPLPNLGVPAAQQLAASVTSIRPQPGVGVTTIGGG 126
Query: 204 -RSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
R E + RTVY + + +V EV+ F
Sbjct: 127 VRDSGEEMILKRTVYVSGLANQVTLEEVRGMF 158
>gi|255562178|ref|XP_002522097.1| Heterogeneous nuclear ribonucleoprotein A1, putative [Ricinus
communis]
gi|223538696|gb|EEF40297.1| Heterogeneous nuclear ribonucleoprotein A1, putative [Ricinus
communis]
Length = 478
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 62/159 (38%), Gaps = 15/159 (9%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGAR 170
D R ++V + + T E L F G++ DC+ D S + F+ F GAR
Sbjct: 131 DPAHRKIFVHGLGWDSTAETLTNAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKKRSGAR 190
Query: 171 AAL-----NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
AL +G M + P T+ P N T P + E R +Y +N+ +
Sbjct: 191 KALEEPQKKIGNRMTACQLASMGPVPTSTAPAN-TPAPGQQQVSEYTQRKIYISNVGADL 249
Query: 226 PQAEVKQFFEAACGGEVRTLPCMIILFY-----FHLFIY 259
++ FF GE+ P + F LF+Y
Sbjct: 250 DPQQLTSFFSKF--GEIEEGPLGLDKLTGKPKGFCLFVY 286
>gi|294950711|ref|XP_002786744.1| hypothetical protein Pmar_PMAR029686 [Perkinsus marinus ATCC 50983]
gi|239901080|gb|EER18540.1| hypothetical protein Pmar_PMAR029686 [Perkinsus marinus ATCC 50983]
Length = 195
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN 174
++RTVYVS + +T E + G+F G++ + + P+ +FA VEF +E A+ A+
Sbjct: 54 LKRTVYVSGLANQVTLEEVQGMFGHFGEIKESSIDVSPYDQCQFALVEFQNEAAAQEAIR 113
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPT 200
+G VRV SK + PT
Sbjct: 114 VGEIPYRGRVVRVEKSKETVKLYPPT 139
>gi|451854943|gb|EMD68235.1| hypothetical protein COCSADRAFT_270468 [Cochliobolus sativus
ND90Pr]
Length = 749
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEF-ADEHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + E G +A
Sbjct: 49 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEE 108
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 109 LNYTVIKGKPCRIMWSQ 125
>gi|448537326|ref|XP_003871310.1| cytoplasmic RNA-binding protein [Candida orthopsilosis Co 90-125]
gi|380355667|emb|CCG25185.1| cytoplasmic RNA-binding protein [Candida orthopsilosis]
Length = 216
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQV-----VDCRVCGDPHSVLRFAFVEF 163
A+R +S R+VY+ ++D T L FS G V + +V G P FA++EF
Sbjct: 85 AERRESDARSVYIGNVDYPTTPLELQQHFSPAGTVNRVTIMTNKVTGQPKG---FAYLEF 141
Query: 164 AD-EHGARAALNLGGTMLGYYPVRVLPSKTAILPVN 198
+D + +A L G++ P++VLP +T I VN
Sbjct: 142 SDVDSMNKAVATLDGSIFRDRPLKVLPKRTNIPGVN 177
>gi|307206655|gb|EFN84627.1| Nucleolysin TIAR [Harpegnathos saltator]
Length = 274
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
E+S RT+YV ++D ++E+ L LFS G V C++ +P + +AFVEF + A
Sbjct: 3 EESNPRTLYVGNLDTTVSEDLLCALFSQIGAVKGCKIIREPGND-PYAFVEFTNHQCAAT 61
Query: 172 AL 173
AL
Sbjct: 62 AL 63
>gi|173421|gb|AAA35320.1| poly(A)-binding protein, partial [Schizosaccharomyces pombe]
Length = 628
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LF+S G V RVC D + L +A+V F + E G +A
Sbjct: 67 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 126
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+M + V+ N+D + + F
Sbjct: 127 LNYTLIKGRPCRIMWSQ------------RDPSLRKMGTGNVFIKNLDPAIDNKALHDTF 174
Query: 235 EA 236
A
Sbjct: 175 SA 176
>gi|296082474|emb|CBI21479.3| unnamed protein product [Vitis vinifera]
Length = 373
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 12/136 (8%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D R ++V + + T E L F GQ+ DC V D ++ + FV F GA
Sbjct: 102 DVSHRKIFVHGLGWDTTRETLLAAFEPYGQIEDCNVVTDRNTGKAKGYGFVLFKTRQGAV 161
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEV 230
AL G + R+ S+ A + P+ P+S+D R +Y +N+ V +
Sbjct: 162 KALKQPGKKINN---RMTQSQLASM--GPSPPPQSQD---TVGRKIYVSNVQADVDPERL 213
Query: 231 KQFFEAACGGEVRTLP 246
+ FF A GE+ T P
Sbjct: 214 RSFF--AKFGEIETGP 227
>gi|118372171|ref|XP_001019282.1| nucleolar phosphoprotein [Tetrahymena thermophila]
gi|89301049|gb|EAR99037.1| nucleolar phosphoprotein [Tetrahymena thermophila SB210]
Length = 320
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
D +T++V ++ +E L F+SCG+VV+ R+ F VEF + G A
Sbjct: 230 DQDSKTIFVGNLSFVTNKETLKKFFASCGKVVNARIAEAEGKSRGFGHVEFEERSGVENA 289
Query: 173 LNLGGTMLGYYPVRV 187
L + G + P+RV
Sbjct: 290 LKMAGEQIDGRPIRV 304
>gi|367008356|ref|XP_003678678.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
gi|359746335|emb|CCE89467.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
Length = 588
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 13/116 (11%)
Query: 108 RAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD 165
+Q+ ++ ++YV ++D +++E L +FS G V RVC D + L +A+V F D
Sbjct: 33 ESQKVETSSASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFND 92
Query: 166 EHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNI 221
+ A+ L Y P++ +P + +P+ R+ S ++ N+
Sbjct: 93 HEAGKTAIE----KLNYAPIKGVPCRIMWSQRDPSM-------RKKGSGNIFIKNL 137
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 59/136 (43%), Gaps = 12/136 (8%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+R+ +++ ++ +I + L FS G ++ C++ D R F
Sbjct: 114 RIMWSQRDPSMRKKGSGNIFIKNLHPDIDNKALHDTFSVFGNILSCKIATDEAGNSRGFG 173
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYC 218
FV F D+ A+ A++ + G +L V V V+ DE + VY
Sbjct: 174 FVHFEDDEAAKEAIDAINGMLLNGQEVYVAQH------VSKKDRQSKLDEAKANFTNVYV 227
Query: 219 TNIDKKVPQAEVKQFF 234
NI E ++FF
Sbjct: 228 KNIHPDTGDEEFEEFF 243
>gi|215820610|ref|NP_001135964.1| RNA binding motif protein 39 [Nasonia vitripennis]
Length = 516
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
Query: 90 RRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV- 148
R R F +G L+ R+ E+ RT++ + Q I L FSS G+V D R+
Sbjct: 130 RSRQPFIKGASPLTNRSDELTPEERDARTIFCMQLSQRIRARDLEEFFSSVGKVQDVRLI 189
Query: 149 -CGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRV 187
C A+VEF D AL L G L P+ V
Sbjct: 190 TCNKTRRFKGIAYVEFKDPESVTLALGLSGQKLLGVPIVV 229
>gi|332858528|ref|XP_003317002.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 1
[Pan troglodytes]
Length = 330
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 16/122 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ +R++ +++ +++ +I + L FS+ G ++ C+V D H F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGF 142
Query: 161 VEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCT 219
V F A+ A+N + G +L V V F R E E E+ +R + T
Sbjct: 143 VHFETHEAAQQAINTMNGMLLNDRKVFV-----------GHFKSRREREAELGARALEFT 191
Query: 220 NI 221
NI
Sbjct: 192 NI 193
Score = 40.4 bits (93), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D L +A++ F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSK 191
+ ML P+R++ S+
Sbjct: 72 MNFEMLKGQPIRIMWSQ 88
>gi|330938161|ref|XP_003305701.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
gi|311317207|gb|EFQ86241.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
Length = 749
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEF-ADEHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + E G +A
Sbjct: 49 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEE 108
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 109 LNYTVIKGKPCRIMWSQ 125
>gi|294940190|ref|XP_002782709.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239894589|gb|EER14504.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 716
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ ++RR+ VYV ++D+NI + L FS G ++ C+V P R F
Sbjct: 120 RLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFG 179
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRVLP-SKTA 193
FV F + A AA+ L G +G V V P KTA
Sbjct: 180 FVHFESDESAEAAIAKLNGMQIGEKTVYVAPFKKTA 215
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 13/110 (11%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALNL 175
++Y D+ ++TE L +F++ G V RVC D L +A++ F + A AL+
Sbjct: 49 SLYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALD- 107
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
L Y P++ P + +P R + VY N+D+ +
Sbjct: 108 ---TLNYSPIKGRPCRLMWSHRDPAL-------RRSGAGNVYVKNLDRNI 147
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 74 ADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFR--AQREDSVRRT---VYVSDIDQNI 128
+D++ ++AI N G K + F+ A+R D + VY+ I +
Sbjct: 185 SDESAEAAIAKLNG-------MQIGEKTVYVAPFKKTAERNDGTPKNFTNVYIKHIPASW 237
Query: 129 TEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL 173
EE++ F + G++ V DP RFAFV +A+ ARAA+
Sbjct: 238 NEEKIKEEFGAFGEITSLAVQTDPKG-RRFAFVNYAEFEQARAAV 281
>gi|213409842|ref|XP_002175691.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212003738|gb|EEB09398.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 174
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 104 GRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRF 158
A R +E ++VYV ++D ++T E L F+ CG + + C + G P F
Sbjct: 45 SEALRNDKEALDAQSVYVGNVDYSVTPEELQAHFAECGPINRVTILCDKFTGHPKG---F 101
Query: 159 AFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAI 194
A++EFA+ AL G+ML P++V P + I
Sbjct: 102 AYIEFAEPSVVPNALLRNGSMLHDRPLKVTPKRMNI 137
>gi|426391822|ref|XP_004062265.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Gorilla
gorilla gorilla]
gi|164651982|gb|ABY64766.1| ePAB [Homo sapiens]
Length = 330
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 16/122 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ +R++ +++ +++ +I + L FS+ G ++ C+V D H F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGF 142
Query: 161 VEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCT 219
V F A+ A+N + G +L V V F R E E E+ +R + T
Sbjct: 143 VHFETHEAAQQAINTMNGMLLNDRKVFV-----------GHFKSRREREAELGARALEFT 191
Query: 220 NI 221
NI
Sbjct: 192 NI 193
Score = 40.4 bits (93), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D L +A++ F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSK 191
+ ML P+R++ S+
Sbjct: 72 MNFEMLKGQPIRIMWSQ 88
>gi|452001105|gb|EMD93565.1| hypothetical protein COCHEDRAFT_1096208 [Cochliobolus
heterostrophus C5]
Length = 749
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEF-ADEHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + E G +A
Sbjct: 49 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEE 108
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 109 LNYTVIKGKPCRIMWSQ 125
>gi|423076693|ref|ZP_17065401.1| hypothetical protein HMPREF0322_04849 [Desulfitobacterium hafniense
DP7]
gi|361852256|gb|EHL04522.1| hypothetical protein HMPREF0322_04849 [Desulfitobacterium hafniense
DP7]
Length = 112
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALNL 175
T+YV ++ N T E L F GQV+ R+ D + F FVE DE AR A +L
Sbjct: 32 TLYVGNLPWNTTSEDLNSFFGQYGQVISSRIITDRETGRSRGFGFVEVEDEDAARMAEDL 91
Query: 176 GGTMLGYYPVRV 187
G G P+ V
Sbjct: 92 NGKDFGGRPLTV 103
>gi|294875884|ref|XP_002767464.1| polyadenylate-binding protein 1-A, putative [Perkinsus marinus ATCC
50983]
gi|239869099|gb|EER00182.1| polyadenylate-binding protein 1-A, putative [Perkinsus marinus ATCC
50983]
Length = 230
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 109 AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEF 163
+ R+ ++RR+ VYV ++D+NI + L FS G ++ C+V P R F FV F
Sbjct: 3 SHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHF 62
Query: 164 ADEHGARAAL-NLGGTMLGYYPVRVLPSK 191
+ A AA+ L G +G V V P K
Sbjct: 63 ESDESAEAAIAKLNGMQIGEKTVYVAPFK 91
Score = 37.4 bits (85), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 109 AQREDSVRRT---VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD 165
A+R D + VY+ I + EE++ F + G++ V DP RFAFV +A+
Sbjct: 94 AERNDGTPKNFTNVYIKHIPASWNEEKIKEEFGAFGEITSLAVQTDPKG-RRFAFVNYAE 152
Query: 166 EHGARAAL 173
ARAA+
Sbjct: 153 FEQARAAV 160
>gi|389593175|ref|XP_003721841.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|321438343|emb|CBZ12095.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 495
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 111 REDSV-RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGA 169
R+D + RRT+YVS + + + L L ++ G V R+C FAFVE GA
Sbjct: 371 RQDEMKRRTIYVSHLPGLLPQSMLLELLTTAGPVNKVRICAGAGYCTLFAFVEMRTLEGA 430
Query: 170 RAALNLGGTMLGYYPVRVLPSKTAI 194
+ A+ + G L + +RV ++ A+
Sbjct: 431 QRAMCMNGLQLMGFAIRVQTARNAV 455
>gi|242025596|ref|XP_002433210.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
gi|212518751|gb|EEB20472.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
Length = 637
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 20/129 (15%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
L G+ R +QR+ S+R++ V++ ++D++I + + FS+ G ++ C+V D
Sbjct: 77 LKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSTFGNILSCKVAQDESG 136
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+ + FV F E A +++ + G +L RV K F+PR E E+E+
Sbjct: 137 TSKGYGFVHFETEEAANKSIDKVNGMLLNGK--RVFVGK---------FIPRKEREKELG 185
Query: 213 SRTVYCTNI 221
+ TN+
Sbjct: 186 EKAKRFTNV 194
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 13/110 (11%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D+ ++TE L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLFEKFSSAGPVLSIRVCRDMITKRSLGYAYVNFQQPADAERALD- 70
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ Y P++ P + +P+ R+ V+ N+DK +
Sbjct: 71 ---TMNYDPLKGKPIRIMWSQRDPSL-------RKSGVGNVFIKNLDKSI 110
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 18/109 (16%)
Query: 97 QGRKRLSGRA-FRAQREDSVRRT----------------VYVSDIDQNITEERLAGLFSS 139
+G+ GRA +A+R+ ++R +YV +ID NI +ERL F+
Sbjct: 259 EGKPLFVGRAQKKAERQQELKRKFEQLKMERLSRYQGVNLYVKNIDDNIDDERLRKEFTP 318
Query: 140 CGQVVDCRVCGDPHSVLRFAFVEFAD-EHGARAALNLGGTMLGYYPVRV 187
G + +V + F FV F+ E +A + G ++G P+ V
Sbjct: 319 FGTITSAKVMLEDGRSKGFGFVCFSSAEEATKAVTEMNGRIVGSKPLYV 367
>gi|294889687|ref|XP_002772922.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239877502|gb|EER04738.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 715
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ ++RR+ VYV ++D+NI + L FS G ++ C+V P R F
Sbjct: 120 RLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFG 179
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRVLP-SKTA 193
FV F + A AA+ L G +G V V P KTA
Sbjct: 180 FVHFESDESAEAAIAKLNGMQIGEKTVYVAPFKKTA 215
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 13/110 (11%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALNL 175
++Y D+ ++TE L +F++ G V RVC D L +A++ F + A AL+
Sbjct: 49 SLYAGDLAPDVTEAVLYEVFNAIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALD- 107
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
L Y P++ P + +P R + VY N+D+ +
Sbjct: 108 ---TLNYSPIKGRPCRLMWSHRDPAL-------RRSGAGNVYVKNLDRNI 147
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 74 ADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFR--AQREDSVRRT---VYVSDIDQNI 128
+D++ ++AI N G K + F+ A+R D + VY+ I +
Sbjct: 185 SDESAEAAIAKLNG-------MQIGEKTVYVAPFKKTAERNDGTPKNFTNVYIKHIPASW 237
Query: 129 TEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL 173
EE++ F + G++ V DP RFAFV +A+ ARAA+
Sbjct: 238 NEEKIKEEFGAFGEITSLAVQTDPKG-RRFAFVNYAEFEQARAAV 281
>gi|322795213|gb|EFZ18035.1| hypothetical protein SINV_11488 [Solenopsis invicta]
Length = 455
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
E+S RT+YV ++D ++E+ L LFS G V C++ +P + +AFVEF + A
Sbjct: 75 EESNPRTLYVGNLDTTVSEDLLCALFSQIGAVKGCKIIREPGND-PYAFVEFTNHQCAAT 133
Query: 172 AL 173
AL
Sbjct: 134 AL 135
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 3/119 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALN-L 175
++V D+ I + L F+ G++ +CR+ DP ++ +AFV F + A AA+N +
Sbjct: 170 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKSEAEAAINAM 229
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
G LG +R S P S + + +YC + +K+ F
Sbjct: 230 NGQWLGSRSIRTNWSTRKPPPPRSERPRHSNNSKPNYEEVLYCGGFTNGITDELIKKTF 288
>gi|443722844|gb|ELU11546.1| hypothetical protein CAPTEDRAFT_164502 [Capitella teleta]
Length = 629
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ +++ ++D+NI + L FS+ G ++ C++ D +
Sbjct: 78 IKGRPIRIMWSQRDPSLRKSGVGNIFIKNLDKNIDNKALYDTFSAFGNILSCKIAMDQNG 137
Query: 155 VLRFAFVEFADEHGARAALNLGGTML 180
L + FV F E AR ++ ML
Sbjct: 138 SLGYGFVHFETEEAARNSIEKVNGML 163
Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 21/114 (18%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D+ ++TE L FS+ G V+ RVC D L +A+V F A AL+
Sbjct: 13 SLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALD- 71
Query: 176 GGTM----LGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
TM + P+R++ S+ R R+ ++ N+DK +
Sbjct: 72 --TMNFDAIKGRPIRIMWSQ------------RDPSLRKSGVGNIFIKNLDKNI 111
>gi|71754547|ref|XP_828188.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|70833574|gb|EAN79076.1| RNA-binding protein, putative [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|261333991|emb|CBH16985.1| DRBD14 [Trypanosoma brucei gambiense DAL972]
Length = 471
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 31/60 (51%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLG 176
RTVYVS + ++ + L +SCG V RVC FAFVE A G AAL LG
Sbjct: 356 RTVYVSHLPASMPQRTFMDLLTSCGGVNKVRVCRGKGYTTLFAFVEMATADGVAAALRLG 415
>gi|401424247|ref|XP_003876609.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492852|emb|CBZ28130.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 495
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 111 REDSV-RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGA 169
R+D + RRT+YVS + + + L L ++ G V R+C FAFVE GA
Sbjct: 371 RQDEMKRRTIYVSHLPGLLPQSMLLELLTTAGPVNKVRICAGAGYCTLFAFVEMRTLEGA 430
Query: 170 RAALNLGGTMLGYYPVRVLPSKTAI 194
+ A+ + G L + +RV ++ A+
Sbjct: 431 QRAMCMNGLQLMGFAIRVQTARNAV 455
>gi|170055835|ref|XP_001863758.1| nucleolysin tia-1 [Culex quinquefasciatus]
gi|167875726|gb|EDS39109.1| nucleolysin tia-1 [Culex quinquefasciatus]
Length = 456
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
+++ +T+YV ++DQ++TE+ L LF G V C++ + S +AF+E+A A+
Sbjct: 3 DEAYPKTLYVGNLDQSVTEDLLCALFGQMGAVKSCKIIREASSD-PYAFIEYASHQSAQT 61
Query: 172 AL 173
AL
Sbjct: 62 AL 63
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 108 RAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFAD 165
+ + + S ++V D+ I E L F+ G++ +CR+ DP ++ +AFV F
Sbjct: 87 QPKTDTSQHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVK 146
Query: 166 EHGARAALN-LGGTMLGYYPVRV 187
+ A A+ + G LG +R
Sbjct: 147 KAEAENAIQMMNGQWLGSRSIRT 169
>gi|432097499|gb|ELK27684.1| Polyadenylate-binding protein 4-like protein [Myotis davidii]
Length = 370
Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 108 RAQREDSVRRT-VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD- 165
+ +R VR T +YV ++D+ I EE+L FSS G ++ +V + F + F+
Sbjct: 283 KQERSWRVRGTKIYVKNLDETIDEEKLRKAFSSFGSIIRVKVMQEEGRSRGFGLICFSSP 342
Query: 166 EHGARAALNLGGTMLGYYPVRVLPSKTA 193
E ARA + G +LG PV + ++ A
Sbjct: 343 EEAARAMAEMNGRLLGSKPVNIALAQRA 370
>gi|449282485|gb|EMC89318.1| Polyadenylate-binding protein 2, partial [Columba livia]
Length = 178
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGAR 170
+R+VYV ++D T E L F SCGQV + C + G P +A++EF ++ +
Sbjct: 45 QRSVYVGNVDYGSTAEELESHFHSCGQVNRVTILCDKFSGHPKG---YAYIEFEEKSSVK 101
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPT 200
AA+ L ++ ++VLP +T + ++ T
Sbjct: 102 AAVELDESVFRGRVIKVLPKRTNMPGISST 131
>gi|410984123|ref|XP_003998381.1| PREDICTED: embryonic polyadenylate-binding protein 2 [Felis catus]
Length = 277
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEH 167
+S R+VYV ++D T E L F+SCG+V + C + G P +A++EFA E
Sbjct: 142 ESDHRSVYVGNVDYGGTAEELEAYFNSCGEVHRVTILCDKFSGHPKG---YAYIEFAAES 198
Query: 168 GARAALNLGGTMLGYYPVRVLPSKT 192
A+AA+ L ++ ++VLP +T
Sbjct: 199 SAQAAVALDKSIFRGRVIKVLPKRT 223
>gi|189190886|ref|XP_001931782.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187973388|gb|EDU40887.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 704
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEF-ADEHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + E G +A
Sbjct: 49 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEE 108
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 109 LNYTVIKGKPCRIMWSQ 125
>gi|398327|emb|CAA81127.1| poly(A)-mRNA binding protein [Anemia phyllitidis]
Length = 638
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 15/125 (12%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAA 172
V ++YV D+D +++E L +F+ GQVV RVC D L +A+V + A A
Sbjct: 24 VAPSLYVGDLDPDVSESELYEVFNQIGQVVSIRVCRDLMTKKSLGYAYVNYGTHQDASQA 83
Query: 173 LNLGG-TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
L L T++ P+R++ S R R+ + ++ N++K + +
Sbjct: 84 LELLNFTLVKGKPIRIMYSH------------RDPSIRKSGAANIFIKNLEKSIDNKALH 131
Query: 232 QFFEA 236
F A
Sbjct: 132 DTFSA 136
Score = 43.5 bits (101), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 13/125 (10%)
Query: 76 DNKQSAIDNFNNNRRRRNNFNQGR-KRLSGR---------AFRAQREDSVRRT-VYVSDI 124
D+ +A++N N + GR ++ S R R ++E+ + +Y+ +I
Sbjct: 255 DDAANAVENLNGKLINEKEWYVGRAQKKSEREAELKAKFEQVRKEKEEKFQGVNLYLKNI 314
Query: 125 DQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEF-ADEHGARAALNLGGTMLGY 182
D +I +E+L LF+ G V C+V P + FV F A E +A ++ G M+G
Sbjct: 315 DDSIDDEKLRELFAVFGTVTSCKVMKSPQGQSMGSGFVTFSAPEEAMQAVNDMNGKMVGS 374
Query: 183 YPVRV 187
P+ V
Sbjct: 375 KPLYV 379
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 66/140 (47%), Gaps = 23/140 (16%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ S+R++ +++ +++++I + L FS+ G ++ CRV D + +
Sbjct: 98 RIMYSHRDPSIRKSGAANIFIKNLEKSIDNKALHDTFSAFGTILSCRVVMDDAGNSKGYG 157
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV+F E A+ A+ + G ++ V V P F+ + ER+M S
Sbjct: 158 FVQFEKEESAQIAIEKVNGMLINDRQVSVAP-----------FI--RKQERDMASSKNFN 204
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N+ + ++++ F
Sbjct: 205 NVYVKNLAEATTDEDLRKVF 224
>gi|45201218|ref|NP_986788.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|74691820|sp|Q74ZS6.1|PABP_ASHGO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|44986072|gb|AAS54612.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|374110037|gb|AEY98942.1| FAGR122Cp [Ashbya gossypii FDAG1]
Length = 585
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 14/137 (10%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+R+ +Y+ ++ I + L FS+ G ++ C+V D + V R F
Sbjct: 110 RIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFG 169
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV F +E AR A+ ML + + + ++ + R E+ ++ VY
Sbjct: 170 FVHFENESDARDAIEAVDGML-------MNDQEVYVALHVSKKDRQSKLEEVKAKFTNVY 222
Query: 218 CTNIDKKVPQAEVKQFF 234
NID++ Q E ++ F
Sbjct: 223 VKNIDQETSQEEFEELF 239
Score = 43.5 bits (101), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV +++ ++E L +FS G V RVC D ++ L +A+V F D E G +A
Sbjct: 39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQ 98
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 99 LNYTLIKGKPCRIMWSQ 115
>gi|150865513|ref|XP_001384763.2| U4/U6 snRNA-associated splicing factor [Scheffersomyces stipitis
CBS 6054]
gi|149386769|gb|ABN66734.2| U4/U6 snRNA-associated splicing factor [Scheffersomyces stipitis
CBS 6054]
Length = 837
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 87/215 (40%), Gaps = 24/215 (11%)
Query: 42 MFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQG--- 98
MF ++ LA FPS HT F + A+ Q A+ +N N +Q
Sbjct: 552 MFEQIGKLASIRFPSQRSNHT-RRFCYVEYENANSALQ-AVKIYNGKVLVDNVLHQDFAL 609
Query: 99 RKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR- 157
+ +S ++ RE + + V +ID + E + G+F CG V + +
Sbjct: 610 QVAISDSEAKSDRETKMESQIRVKNIDYMLDIEAIKGMFVECGTVTSVVIPKFQRNNFNQ 669
Query: 158 ----FAFVEFADEHGARAALNLGGTMLGYYPVRV-LPSKTAILP--------VNPTFLPR 204
A+V F H A+ A+ + G ++G P+ V L S++ + + +
Sbjct: 670 KNNGLAYVTFESNHEAQKAVQMDGKIIGGRPISVALSSRSQKYSQSHKHDNGYSASKYSQ 729
Query: 205 SEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACG 239
ED RTV TN+D + +VK FF G
Sbjct: 730 FED-----VRTVGVTNVDNTLTAEQVKLFFSTNGG 759
>gi|146090675|ref|XP_001466305.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|398017412|ref|XP_003861893.1| hypothetical protein, conserved [Leishmania donovani]
gi|134070667|emb|CAM69016.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|322500121|emb|CBZ35196.1| hypothetical protein, conserved [Leishmania donovani]
Length = 495
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 111 REDSV-RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGA 169
R+D + RRT+YVS + + + L L ++ G V R+C FAFVE GA
Sbjct: 371 RQDEMKRRTIYVSHLPGLLPQSMLLELLTTAGPVNKVRICAGAGYCTLFAFVEMRTLEGA 430
Query: 170 RAALNLGGTMLGYYPVRVLPSKTAI 194
+ A+ + G L + +RV ++ A+
Sbjct: 431 QRAMCMNGLQLMGFAIRVQTARNAV 455
>gi|326523691|dbj|BAJ93016.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 244
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 4/138 (2%)
Query: 100 KRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLR 157
K L+ A E+ R +YV +I + +T + L+ +F++ G VV V D +S R
Sbjct: 52 KVLASSAVMEAPEELATRKLYVGNIPRTVTNDELSAMFAAHGTVVRAEVMYDKYSGRSRR 111
Query: 158 FAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTV 216
F FV + AA+ +L T +G ++V +++ LP P SE V
Sbjct: 112 FGFVTMSTAEEVAAAIESLNDTEVGGRKIKVNVTES-FLPNIDASAPESEPSFVDSQYKV 170
Query: 217 YCTNIDKKVPQAEVKQFF 234
Y N+ KKV +K FF
Sbjct: 171 YVGNLAKKVTTEVLKNFF 188
>gi|326474523|gb|EGD98532.1| polyadenylate-binding protein [Trichophyton tonsurans CBS 112818]
Length = 676
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEF---ADEHGARAA 172
++YV ++D ++TE L LFSS GQV RVC D L +A+V + AD G RA
Sbjct: 59 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTAD--GERAL 116
Query: 173 LNLGGTMLGYYPVRVLPSK 191
+L T++ P R++ S+
Sbjct: 117 EDLNYTLIKGRPCRIMWSQ 135
Score = 38.9 bits (89), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAAL 173
+YV +++Q++T+E GLF G++ + D + F FV F+D A AA+
Sbjct: 241 IYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAV 297
>gi|393215302|gb|EJD00793.1| RNA-binding domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 589
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 111 REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHG 168
+EDS +TV+V + N+ + LA F+ CG+VV RV D ++ F FVEFA G
Sbjct: 317 QEDS--KTVFVGRLSWNVDNDWLAQEFADCGEVVSARVQMDRNTGKSRGFGFVEFATAEG 374
Query: 169 ARAALNLGG 177
A AA+ L G
Sbjct: 375 ANAAVALNG 383
>gi|357473911|ref|XP_003607240.1| RNA-binding protein [Medicago truncatula]
gi|355508295|gb|AES89437.1| RNA-binding protein [Medicago truncatula]
Length = 623
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 9/156 (5%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGAR 170
E+S +T++V ++ ++ + F CG+VVD R D + F VEFA A+
Sbjct: 359 ENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAAQ 418
Query: 171 AALNLGGTMLGYYPVR--VLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
+AL + G L VR + + A P N + R S+TV+ DK + +
Sbjct: 419 SALEMNGQELLQRAVRLDLARERGAFTPNNNSNYSAQSGGRGQ-SQTVFVRGFDKNLGED 477
Query: 229 EVK----QFFEAACGGEVR-TLPCMIILFYFHLFIY 259
E++ + F CG R ++P Y F Y
Sbjct: 478 EIRAKLMEHFGGTCGEPTRVSIPKDFESGYSKGFAY 513
>gi|357473909|ref|XP_003607239.1| RNA-binding protein [Medicago truncatula]
gi|355508294|gb|AES89436.1| RNA-binding protein [Medicago truncatula]
Length = 635
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 9/156 (5%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGAR 170
E+S +T++V ++ ++ + F CG+VVD R D + F VEFA A+
Sbjct: 371 ENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAAQ 430
Query: 171 AALNLGGTMLGYYPVR--VLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
+AL + G L VR + + A P N + R S+TV+ DK + +
Sbjct: 431 SALEMNGQELLQRAVRLDLARERGAFTPNNNSNYSAQSGGRGQ-SQTVFVRGFDKNLGED 489
Query: 229 EVK----QFFEAACGGEVR-TLPCMIILFYFHLFIY 259
E++ + F CG R ++P Y F Y
Sbjct: 490 EIRAKLMEHFGGTCGEPTRVSIPKDFESGYSKGFAY 525
>gi|302803765|ref|XP_002983635.1| hypothetical protein SELMODRAFT_234317 [Selaginella moellendorffii]
gi|300148472|gb|EFJ15131.1| hypothetical protein SELMODRAFT_234317 [Selaginella moellendorffii]
Length = 573
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 111 REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGAR 170
+E +T++V +I ++T+E LA F G+VV R+ + FA VEF+ E A+
Sbjct: 310 KEGGESKTLFVRNIPFSVTDEDLAQYFEDAGEVVGVRIAQGDNGPKGFAHVEFSTEAAAQ 369
Query: 171 AALNLGGTMLG 181
ALN G +G
Sbjct: 370 KALNKSGQDMG 380
>gi|358334696|dbj|GAA40294.2| poly(U)-binding-splicing factor PUF60, partial [Clonorchis
sinensis]
Length = 519
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 25/121 (20%)
Query: 79 QSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSV----------RRTVYVSDIDQNI 128
Q AID NN +F GR+ GR D+V +YVS I ++
Sbjct: 154 QLAIDQMNNA-----SFG-GRQLKVGRPSNLTNADTVIAELVAEYKLENRIYVSGIHVDL 207
Query: 129 TEERLAGLFSSCGQVVDCRVCGDPHSVLR---FAFVEFADEHGARAAL------NLGGTM 179
TE+ ++ +F + G++V CR+ DP S R F ++E+ + A A+ NLGG +
Sbjct: 208 TEDDISLVFEAFGKIVFCRLVVDPESTERHRGFGYIEYQNSQSAADAVASMNQFNLGGQL 267
Query: 180 L 180
L
Sbjct: 268 L 268
>gi|195024447|ref|XP_001985876.1| GH21052 [Drosophila grimshawi]
gi|193901876|gb|EDW00743.1| GH21052 [Drosophila grimshawi]
Length = 645
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 17/123 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+RR+ V++ ++D+ I + + FS+ G ++ C+V D + +
Sbjct: 74 RIMWSQRDPSLRRSGVGNVFIKNLDKAIDNKAIYDTFSAFGNILSCKVATDEKGHSKGYG 133
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYC 218
FV F E A +++ + G +L V V F+PR E E+E+ +
Sbjct: 134 FVHFETEEAANTSIDKVNGMLLNGKKVYV-----------GKFIPRKEREKELGEKAKLF 182
Query: 219 TNI 221
TN+
Sbjct: 183 TNV 185
Score = 40.4 bits (93), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ Q+I E L FS+ G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLHQDINEAGLFEKFSTAGPVLSIRVCRDVVTRRSLGYAYVNFQQPADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R V+ N+DK + + F
Sbjct: 63 MNFDLVRNKPIRIMWSQ------------RDPSLRRSGVGNVFIKNLDKAIDNKAIYDTF 110
Query: 235 EA 236
A
Sbjct: 111 SA 112
>gi|194757405|ref|XP_001960955.1| GF11244 [Drosophila ananassae]
gi|190622253|gb|EDV37777.1| GF11244 [Drosophila ananassae]
Length = 307
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 60/123 (48%), Gaps = 15/123 (12%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-N 174
R +Y+ +++++I + + FS G +++C V D R + FV F E ARAA+
Sbjct: 113 RKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDTEEAARAAIEK 172
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS--RTVYCTNIDKKVPQAEVKQ 232
+ G + V V+ F+PR + E+E + + +Y N+ ++ + +++
Sbjct: 173 VNGMLCNNQKVHVVK-----------FIPRRDREQEKATHFKNLYVKNLGEEFTEQHLRE 221
Query: 233 FFE 235
FE
Sbjct: 222 MFE 224
>gi|440797930|gb|ELR19004.1| polyadenylate-binding protein family protein [Acanthamoeba
castellanii str. Neff]
Length = 462
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 6/134 (4%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGA-RAALNLG 176
+Y+ ++ + TEE L F + G V + DP + R FAFV F D A RA L
Sbjct: 191 IYIKNLGEAYTEEDLKRDFGAFGTVQSAVLMKDPRDIGRQFAFVNFEDHEAAHRATEELN 250
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTV--YCTNIDKKVPQAEVKQFF 234
G LG V V + +FL + +ER + + Y N+D V E+ + F
Sbjct: 251 GRKLGDKEVYV--GRAQKKSERESFLRKLREERAQKYQGINLYIKNLDDTVNDEELHKLF 308
Query: 235 EAACGGEVRTLPCM 248
A G++ + M
Sbjct: 309 SALPFGQITSCKVM 322
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALN- 174
++YV D++ +TE L +F + G V RVC D L +A+V F + A AL+
Sbjct: 11 SLYVGDLNPTVTEALLFEIFKAVGPVASIRVCRDAVTRRSLGYAYVNFHNVVDAERALDT 70
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S R R+ ++ N+DK + + F
Sbjct: 71 LNYTLIKGRPCRIMWSH------------RDPSIRKSGQGNIFIKNLDKSIDNKALYDTF 118
Query: 235 EA 236
A
Sbjct: 119 SA 120
>gi|119596295|gb|EAW75889.1| hCG2019100, isoform CRA_c [Homo sapiens]
Length = 433
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 16/122 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ +R++ +++ +++ +I + L FS+ G ++ C+V D H F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGF 142
Query: 161 VEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCT 219
V F A+ A+N + G +L V V F R E E E+ +R + T
Sbjct: 143 VHFETHEAAQQAINTMNGMLLNDRKVFV-----------GHFKSRREREAELGARALEFT 191
Query: 220 NI 221
NI
Sbjct: 192 NI 193
Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D L +A++ F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSK 191
+ ML P+R++ S+
Sbjct: 72 MNFEMLKGQPIRIMWSQ 88
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 105 RAFRAQREDSVRR----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R F ++D +RR +YV ++D +I +++L FS G + +V + F F
Sbjct: 278 RRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGF 337
Query: 161 VEFAD-EHGARAALNLGGTMLGYYPVRV 187
V F+ E +A + G ++G P+ V
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGTKPLYV 365
>gi|33359635|gb|AAQ17065.1| nucleolin 3 [Cyprinus carpio]
gi|33949944|gb|AAQ55855.1| nucleolin [Cyprinus carpio]
Length = 637
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 15/108 (13%)
Query: 133 LAGLFSSCG-QVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSK 191
+A FS G ++ D RV G +F +V+FA E + AL L G L PV++ +K
Sbjct: 240 IAKFFSKEGLEIQDVRVGG----TKKFGYVDFASEEELQKALGLNGKKLMGQPVKLDKAK 295
Query: 192 TAILPVNPTFLPRSED-EREMCSRTVYCTNIDKKVPQAEVKQFFEAAC 238
+ S+D ++E SRT++ N+ V Q E+K+ F+ A
Sbjct: 296 SK---------ENSQDSKKERDSRTLFVKNLPYSVTQEELKEIFDQAV 334
>gi|195121744|ref|XP_002005379.1| GI19109 [Drosophila mojavensis]
gi|193910447|gb|EDW09314.1| GI19109 [Drosophila mojavensis]
Length = 300
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 15/121 (12%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-NLG 176
+Y+ +++++I + + FS+ G +++C V D R + FV F E ARAA+ +
Sbjct: 108 IYIKNLERSIDNKAVYDTFSAFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 167
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS--RTVYCTNIDKKVPQAEVKQFF 234
G + V V+ F+PR + E+E + + +Y N+ ++ + +++ F
Sbjct: 168 GMLCNNQKVHVVK-----------FIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMF 216
Query: 235 E 235
E
Sbjct: 217 E 217
>gi|393909208|gb|EFO19127.2| hypothetical protein LOAG_09365 [Loa loa]
Length = 421
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV----CGDPHSVLRFAFV 161
F ED RTVYV ++D +ITE+ + LF G V +V DP +AFV
Sbjct: 63 GFDTGSEDHQPRTVYVGNLDPSITEDFITTLFGQIGAVTKTKVIFDGTNDP-----YAFV 117
Query: 162 EFADEHGARAAL 173
EFAD + A AL
Sbjct: 118 EFADHYTAAQAL 129
>gi|255538240|ref|XP_002510185.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223550886|gb|EEF52372.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 658
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 13/125 (10%)
Query: 76 DNKQSAIDNFNNNRRRRNNFNQGR-KRLSGRAF--RAQREDSVRRTV--------YVSDI 124
D A+++ N + + G+ ++ S R ++Q E S++ V Y+ ++
Sbjct: 266 DAAAKAVESLNGKKIDDKEWYVGKAQKKSERELELKSQFEQSMKEAVDKYQGVNLYIKNL 325
Query: 125 DQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFA-DEHGARAALNLGGTMLGY 182
D +I++E L LFS G + C+V DP + R + FV F+ E +RA + G M+
Sbjct: 326 DDSISDENLKELFSDFGMITSCKVMRDPSGISRGSGFVAFSTPEEASRALAEMNGKMVVS 385
Query: 183 YPVRV 187
P+ V
Sbjct: 386 KPLYV 390
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+D N+T+ +L +F+ GQVV RVC D L + +V + A AL+
Sbjct: 38 SLYVGDLDLNVTDSQLYDVFNQVGQVVSVRVCRDLTTRRSLGYGYVNYTSPQDAARALDI 97
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
L T P+R++ S R R+ + ++ N+DK +
Sbjct: 98 LNFTPFNNKPIRIMYSH------------RDPSIRKSGTGNIFIKNLDKTI 136
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ S+R++ +++ ++D+ I + L FSS G ++ C+V D R +
Sbjct: 109 RIMYSHRDPSIRKSGTGNIFIKNLDKTIDHKALHDTFSSFGNILSCKVATDSSGQSRGYG 168
Query: 160 FVEFADEHGARAALN-LGGTML 180
FV+F +E A+ A++ L G +L
Sbjct: 169 FVQFDNEEAAQNAIDKLNGMLL 190
>gi|33359633|gb|AAQ17064.1| nucleolin 2 [Cyprinus carpio]
Length = 643
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 15/108 (13%)
Query: 133 LAGLFSSCG-QVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSK 191
+A FS G ++ D RV G +F +V+FA E + AL L G L PV++ +K
Sbjct: 240 IAKFFSKEGLEIQDVRVGG----TKKFGYVDFASEEELQKALGLNGKKLMGQPVKLDKAK 295
Query: 192 TAILPVNPTFLPRSED-EREMCSRTVYCTNIDKKVPQAEVKQFFEAAC 238
+ S+D ++E SRT++ N+ V Q E+K+ F+ A
Sbjct: 296 SK---------ENSQDSKKERDSRTLFVKNLPYSVTQEELKEIFDQAV 334
>gi|19114289|ref|NP_593377.1| mRNA export shuttling protein [Schizosaccharomyces pombe 972h-]
gi|3123239|sp|P31209.2|PABP_SCHPO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|2104439|emb|CAB08762.1| mRNA export shuttling protein [Schizosaccharomyces pombe]
Length = 653
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LF+S G V RVC D + L +A+V F + E G +A
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+M + V+ N+D + + F
Sbjct: 141 LNYTLIKGRPCRIMWSQ------------RDPSLRKMGTGNVFIKNLDPAIDNKALHDTF 188
Query: 235 EA 236
A
Sbjct: 189 SA 190
>gi|366999420|ref|XP_003684446.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
gi|357522742|emb|CCE62012.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
Length = 579
Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGAR 170
D+ ++YV ++D +++E L +FS G V RVC D + L +A+V F D R
Sbjct: 46 DTTSASLYVGELDPSVSEALLYDIFSPIGPVTSIRVCRDAITKTSLGYAYVNFNDHESGR 105
Query: 171 AALNLGGTMLGYYPVRVLP 189
A+ L Y P++ P
Sbjct: 106 TAIE----KLNYSPIKGKP 120
>gi|452820290|gb|EME27334.1| RNA-binding protein [Galdieria sulphuraria]
Length = 596
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALN 174
RT++V + Q +TE+ + FS+ G+V D R+ D S A+VEF + +A+
Sbjct: 186 RTIFVWQLAQKVTEKDVYNFFSAAGKVRDIRMIIDKRSGRHKGAAYVEFYYKEAIPSAMR 245
Query: 175 LGGTMLGYYPVRVLPSK 191
L G L YPV + PS+
Sbjct: 246 LAGQQLCGYPVAIKPSE 262
>gi|400595551|gb|EJP63346.1| RNA recognition domain-containing protein [Beauveria bassiana ARSEF
2860]
Length = 616
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDC-----RVCGDPHSVLRFAFVEFADEH 167
D RR++Y+ ++ N+TEE L L S+CG+V+ V G P + FAFVEF+
Sbjct: 312 DRDRRSIYMGNLPMNMTEETLTNLISACGEVIAVVLFKKPVPGSPSKMTCFAFVEFSRPD 371
Query: 168 GARAAL 173
A A+
Sbjct: 372 NADDAI 377
>gi|359386152|gb|AEV43365.1| poly A-binding protein 2 [Citrus sinensis]
Length = 652
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 15/114 (13%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172
V ++YV D+D ++ + +L LF+ GQVV RVC D + L + +V + H A A
Sbjct: 38 VSTSLYVGDLDLSVNDSQLYDLFNQMGQVVSVRVCRDLSTRRSLGYGYVNYNAAHEATRA 97
Query: 173 LN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
L+ L T L P+R++ S +PT R+ + ++ N+DK +
Sbjct: 98 LDELNFTPLNGKPIRIMYSYR-----DPTI-------RKSGAGNIFIKNLDKSI 139
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLG 176
+YV ++D +I++++L LFS G + C+V DP+ + R + FV F+ E ++A +
Sbjct: 324 LYVKNLDDSISDDKLKELFSEFGTITSCKVMRDPNGISRGSGFVAFSTAEEASKALTEMN 383
Query: 177 GTMLGYYPVRV 187
G M+ P+ V
Sbjct: 384 GKMVVSKPLYV 394
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 73/146 (50%), Gaps = 25/146 (17%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
L+G+ R + R+ ++R++ +++ ++D++I + L FS+ G ++ C+V D
Sbjct: 106 LNGKPIRIMYSYRDPTIRKSGAGNIFIKNLDKSIDNKALHDTFSTFGNILSCKVATDSLG 165
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
R + FV+F +E A++A++ L G +L V V P FL R ++
Sbjct: 166 QSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGP-----------FL-RKQERESTA 213
Query: 213 SRT----VYCTNIDKKVPQAEVKQFF 234
+T VY N+ + + ++K+ F
Sbjct: 214 DKTRFNNVYVKNLSETTTEDDLKKIF 239
>gi|391330636|ref|XP_003739762.1| PREDICTED: nucleolysin TIAR-like [Metaseiulus occidentalis]
Length = 364
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD 165
+F + ++ RT+YV ++D +TE+ + LFS GQ+ C++ +P S + FVEF +
Sbjct: 2 SFPSPQDGGQPRTLYVGNLDSGVTEDLVCALFSQMGQIKGCKIIHEPGSD-PYCFVEFVN 60
Query: 166 EHGARAAL 173
A +A+
Sbjct: 61 HSDASSAI 68
>gi|7673359|gb|AAF66825.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 479
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 14/135 (10%)
Query: 66 FSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGR---KRLSGRAFRAQREDSVRRTV--- 119
F IN A+D + A+++ N + + G+ K + +++ E + + V
Sbjct: 81 FGFINFETAEDAAK-AVESLNGKKFDDKEWYVGKAQKKSEREQELKSKFEQTAKEAVDKY 139
Query: 120 -----YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFA-DEHGARAA 172
YV ++D I +E+L LFS G + C+V DP + R + FV F+ E +RA
Sbjct: 140 QGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRAL 199
Query: 173 LNLGGTMLGYYPVRV 187
+ G M+ P+ V
Sbjct: 200 SEMNGKMIVSKPLYV 214
>gi|351697106|gb|EHB00025.1| Polyadenylate-binding protein 2, partial [Heterocephalus glaber]
Length = 189
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFA 164
+R ++ R++YV ++D T E L F CG V + C + G P FA++EF+
Sbjct: 48 ERMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFS 104
Query: 165 DEHGARAALNLGGTMLGYYPVRVLPSKT 192
D+ R +L L ++ ++V+P +T
Sbjct: 105 DKESVRTSLALDESLFRGRQIKVIPKRT 132
>gi|406700097|gb|EKD03282.1| hypothetical protein A1Q2_02392 [Trichosporon asahii var. asahii
CBS 8904]
Length = 387
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVC--GDPHSVLRFAFVEFADE 166
++ E TV+V + NI + LA F+SCG+VV R+ D F +VEFAD
Sbjct: 196 SEGEQEATNTVFVGGLSWNIDNDWLASEFASCGEVVSARIVLDRDTQRSRGFGYVEFADV 255
Query: 167 HGARAALNLGGTMLGYYPVRV 187
A A+ G L VRV
Sbjct: 256 DSAIKAIEFEGKELDGRAVRV 276
>gi|392395169|ref|YP_006431771.1| RRM domain-containing RNA-binding protein [Desulfitobacterium
dehalogenans ATCC 51507]
gi|390526247|gb|AFM01978.1| RRM domain-containing RNA-binding protein [Desulfitobacterium
dehalogenans ATCC 51507]
Length = 116
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALNL 175
T+YV ++ N T E L+ F GQV+ R+ D + F FVE DE R A +L
Sbjct: 36 TLYVGNLPWNTTSEDLSSFFGQYGQVISSRIITDRETGRSRGFGFVEVEDEDATRMAEDL 95
Query: 176 GGTMLGYYPVRV 187
G G P+ V
Sbjct: 96 NGKDFGGRPLTV 107
>gi|29841435|gb|AAP06467.1| similar to GenBank Accession Number AJ298278 poly(A) binding
protein in Rattus norvegicus [Schistosoma japonicum]
Length = 307
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 17/136 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D+ +++ L FS G V+ RVC D L + +V F D A AL +
Sbjct: 14 SLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQALEV 73
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L Y P+ P + +P+ R+ ++ N+DK + Q E+ F
Sbjct: 74 ----LNYEPLMGRPIRIMWSQRDPSL-------RKSGKGNIFIKNLDKSIEQKELYDTFS 122
Query: 236 AACGGEVRTLPCMIIL 251
R L C I++
Sbjct: 123 FFG----RILSCKIVM 134
>gi|213409529|ref|XP_002175535.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212003582|gb|EEB09242.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 621
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 15/126 (11%)
Query: 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGAR 170
S ++Y+ ++D +TE L LF+S G V RVC D L +A+V F + E G +
Sbjct: 66 STSASLYIGELDPMVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEK 125
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEV 230
A L T++ P R++ S+ R R+M + V+ N+D + +
Sbjct: 126 ALDELNYTLIKGRPCRIMWSQ------------RDPSLRKMGTGNVFIKNLDPAIDNKAL 173
Query: 231 KQFFEA 236
F A
Sbjct: 174 HDTFSA 179
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 38/186 (20%)
Query: 24 NLETKKSESEFTVQKLVDMFTKLNPL--AKEFFPSYYHQHTDHHFSVINNNFAD-DNKQS 80
NL+ +E EFT KL + + K+ L AK+ + F+ +N FA D+ Q
Sbjct: 256 NLDLDTTEEEFT--KLFEKYGKITSLSLAKDNAGKF------RGFAFVN--FATHDSAQQ 305
Query: 81 AIDNFNNNRRRRNNFNQGRKRLSGRAFRA-QREDSVRRT----------------VYVSD 123
A+D N+ + G+K GRA + +R++ +R+ ++V +
Sbjct: 306 AVDELNDFEYK------GKKLYVGRAQKKHERQEELRKQYEQMKLEKINKYQGVNLFVKN 359
Query: 124 IDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFAD-EHGARAALNLGGTMLG 181
+ I +ERL FS+ G + +V D ++ + F FV +++ E +A + ML
Sbjct: 360 LQDEIDDERLKSEFSAFGTITSAKVMTDENNKSKGFGFVCYSNPEEATKAIAEMNQRMLA 419
Query: 182 YYPVRV 187
P+ V
Sbjct: 420 GKPLYV 425
>gi|386780450|dbj|BAM15222.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 657
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNL 175
++YV D++ N+T+ +L LF+ GQVV RVC D + L + +V +++ + A A+
Sbjct: 39 SLYVGDLEFNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPNDASRAME- 97
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
ML + PV + +PT R+ S ++ N+DK +
Sbjct: 98 ---MLNFTPVNGKSIRVMYSHRDPTL-------RKSGSANIFIKNLDKSI 137
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 14/135 (10%)
Query: 66 FSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGR---KRLSGRAFRAQREDSVRRTV--- 119
F IN A+D + A+++ N + + G+ K + +++ E + + V
Sbjct: 259 FGFINFETAEDAAK-AVESLNGKKFDDKEWYVGKAQKKSEREQELKSKFEQTAKEAVDKY 317
Query: 120 -----YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFA-DEHGARAA 172
YV ++D I +E+L LFS G + C+V DP + R + FV F+ E +RA
Sbjct: 318 QGLNLYVKNLDDTIDDEKLKELFSEFGTITSCKVMRDPSGISRGSGFVAFSTSEEASRAL 377
Query: 173 LNLGGTMLGYYPVRV 187
+ G M+ P+ V
Sbjct: 378 SEMNGKMIVSKPLYV 392
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 48/82 (58%), Gaps = 6/82 (7%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ ++R++ +++ ++D++I + L FSS G ++ C++ D + + +
Sbjct: 110 RVMYSHRDPTLRKSGSANIFIKNLDKSIDNKALHDTFSSFGNILSCKIATDSNGQSKGYG 169
Query: 160 FVEFADEHGARAALN-LGGTML 180
FV++ +E A+ A++ L G ++
Sbjct: 170 FVQYDNEESAQGAIDKLNGMLM 191
>gi|385305500|gb|EIF49466.1| pub1p [Dekkera bruxellensis AWRI1499]
Length = 489
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 16/123 (13%)
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCG-QVVDCRVCGDPHS-VLRFAFVEF 163
A RE S + T+YV +ID +++E+ L LF S G Q+ ++ D + +AF+E+
Sbjct: 147 AAHGGRELS-KTTLYVGNIDNSVSEDMLRDLFGSLGAQIQSIKILYDKNKRGFNYAFIEY 205
Query: 164 ADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNID 222
D A AL L GT+L YP+++ T+ R++ R + T++ ++
Sbjct: 206 EDHXKAENALQALNGTVLANYPLKI------------TWAYRTQQSRSGENFTLFVGDLS 253
Query: 223 KKV 225
++
Sbjct: 254 PEI 256
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 21/141 (14%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGA-RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A RA + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQDAADRAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFE 235
VY N ++ ++K+ FE
Sbjct: 192 NVYIKNFGDEMEDEQLKEMFE 212
Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FS G V+ RVC D L +A+V F+ A AL+
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVVKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|125775095|ref|XP_001358799.1| GA18869 [Drosophila pseudoobscura pseudoobscura]
gi|195144954|ref|XP_002013461.1| GL24152 [Drosophila persimilis]
gi|54638540|gb|EAL27942.1| GA18869 [Drosophila pseudoobscura pseudoobscura]
gi|194102404|gb|EDW24447.1| GL24152 [Drosophila persimilis]
Length = 464
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
++S +T+YV ++D +++EE L LF + G V +C++ +P + +AF+E+++ A
Sbjct: 2 DESQPKTLYVGNLDSSVSEELLIALFGTMGAVKNCKIIREPGND-PYAFIEYSNYQAAST 60
Query: 172 AL 173
AL
Sbjct: 61 AL 62
>gi|170592088|ref|XP_001900801.1| RNA recognition motif. [Brugia malayi]
gi|158591668|gb|EDP30272.1| RNA recognition motif [Brugia malayi]
Length = 421
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV----CGDPHSVLRFAFV 161
F ED RTVYV ++D +ITE+ + LF G V +V DP +AFV
Sbjct: 63 GFDTGSEDHQPRTVYVGNLDPSITEDFITTLFGQIGAVTKTKVIFDGTNDP-----YAFV 117
Query: 162 EFADEHGARAAL 173
EFAD + A AL
Sbjct: 118 EFADHYTAAQAL 129
>gi|412991277|emb|CCO16122.1| predicted protein [Bathycoccus prasinos]
Length = 620
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 15/126 (11%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFAD-EHG 168
E++ ++YV D++ + TE +L LFS+ G VV RVC D L +A+V F+ +
Sbjct: 38 ENASNTSLYVGDLESSATEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNFSQAQDA 97
Query: 169 ARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
ARA L ++ P+R+L S+ +PT R+ ++ N+DK +
Sbjct: 98 ARAIDVLNFQVVNGKPIRILYSQR-----DPTI-------RKSGVGNIFIKNLDKDIDTV 145
Query: 229 EVKQFF 234
++ F
Sbjct: 146 ALRDTF 151
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 14/188 (7%)
Query: 13 AANNTNNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNN 72
A T K NN+ K E T ++L +F P+ S F +
Sbjct: 210 AERGTTETKFNNVFVKNLGDEVTDEELRKVFEGFGPVTSVMI-SKDEDGKSKGFGFVCYE 268
Query: 73 FADDNKQSA--IDNFNNNRRRRNNFNQGRKRLSGRA-----FRAQREDSVRRT----VYV 121
+D ++ +D + ++ + +K+ A F A+R + + + +Y+
Sbjct: 269 TPEDASKAVEELDGKHGEEDKKWVVCRAQKKAEREAELKAKFEAERRERMEKMAGANLYI 328
Query: 122 SDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFAD-EHGARAALNLGGTM 179
+++ +E L LF G + CRV D V R AFV F+ E RA L G M
Sbjct: 329 KNLEDGADDETLRELFKEFGTITSCRVMRDASGVSRGSAFVAFSSPEEATRAVTELNGKM 388
Query: 180 LGYYPVRV 187
+G P+ V
Sbjct: 389 VGAKPLYV 396
>gi|312086091|ref|XP_003144941.1| hypothetical protein LOAG_09365 [Loa loa]
Length = 394
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV----CGDPHSVLRFAFV 161
F ED RTVYV ++D +ITE+ + LF G V +V DP +AFV
Sbjct: 36 GFDTGSEDHQPRTVYVGNLDPSITEDFITTLFGQIGAVTKTKVIFDGTNDP-----YAFV 90
Query: 162 EFADEHGARAAL 173
EFAD + A AL
Sbjct: 91 EFADHYTAAQAL 102
>gi|302817804|ref|XP_002990577.1| hypothetical protein SELMODRAFT_448081 [Selaginella moellendorffii]
gi|300141745|gb|EFJ08454.1| hypothetical protein SELMODRAFT_448081 [Selaginella moellendorffii]
Length = 602
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 111 REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGAR 170
+E +T++V +I ++T+E LA F G+VV R+ + FA VEF+ E A+
Sbjct: 339 KEAGESKTLFVRNIPFSVTDEDLAQYFEDAGEVVGVRIAQGDNGPKGFAHVEFSTEAAAQ 398
Query: 171 AALNLGGTMLG 181
ALN G +G
Sbjct: 399 KALNKSGQDMG 409
>gi|225438611|ref|XP_002276585.1| PREDICTED: DAZ-associated protein 1-like [Vitis vinifera]
Length = 396
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 12/137 (8%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D R ++V + + T E L F GQ+ DC V D ++ + FV F GA
Sbjct: 88 DVSHRKIFVHGLGWDTTRETLLAAFEPYGQIEDCNVVTDRNTGKAKGYGFVLFKTRQGAV 147
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEV 230
AL G + R+ S+ A + P+ P+S+D R +Y +N+ V +
Sbjct: 148 KALKQPGKKINN---RMTQSQLASM--GPSPPPQSQD---TVGRKIYVSNVQADVDPERL 199
Query: 231 KQFFEAACGGEVRTLPC 247
+ FF A GE+ T P
Sbjct: 200 RSFF--AKFGEIETGPI 214
>gi|56758360|gb|AAW27320.1| SJCHGC06322 protein [Schistosoma japonicum]
Length = 721
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 108 RAQREDSVRRTV--YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFA 164
RA+R+ + V YV ++D NI ++RL FS G + +V D ++ + F FV FA
Sbjct: 285 RAERQSNYMLNVNLYVKNLDDNIDDKRLEEAFSVHGSITSAKVMKDANNRSKGFGFVCFA 344
Query: 165 D-EHGARAALNLGGTMLGYYPVRV 187
+ E ARA ++ GT++G P+ V
Sbjct: 345 NPEQAARAVTDMNGTIIGSKPLYV 368
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 17/136 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D+ +++ L FS G V+ RVC D L + +V F D A AL +
Sbjct: 14 SLYVGDLHPRVSDSALQAKFSEIGPVLSARVCRDLATRQSLGYGYVNFEDPKHAEQALEV 73
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L Y P+ P + +P+ R+ ++ N+DK + Q E+ F
Sbjct: 74 ----LNYEPLMGRPIRIMWSQRDPSL-------RKSGKGNIFIKNLDKSIEQKELYDTFS 122
Query: 236 AACGGEVRTLPCMIIL 251
R L C I++
Sbjct: 123 FFG----RILSCKIVM 134
>gi|403216743|emb|CCK71239.1| hypothetical protein KNAG_0G01810 [Kazachstania naganishii CBS
8797]
Length = 596
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 103 SGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAF 160
S + +A D ++YV ++D +++E L LFS G V RVC D + L +A+
Sbjct: 33 SSESQQAGDNDVTSTSLYVGELDPSVSEALLYDLFSPIGSVASIRVCRDAITKTSLGYAY 92
Query: 161 VEFADEHGARAALNLGGTMLGYYPVR 186
V F+D + A+ L Y P++
Sbjct: 93 VNFSDHEAGKQAIE----KLNYTPIK 114
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 22/141 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+R+ +++ +++Q+I + L FS G ++ ++ D + F
Sbjct: 119 RIMWSQRDPSLRKKGHGNIFIKNLNQDIDNKALFDTFSVFGNILSSKIATDETGKSKGFG 178
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV F +E A A++ L G +L + V P L R E + ++
Sbjct: 179 FVHFEEESAANEAIDALNGMLLNGQEIYVAP-----------HLTRKERDSQLEETKAHF 227
Query: 216 --VYCTNIDKKVPQAEVKQFF 234
VY NID + E K+FF
Sbjct: 228 TNVYVKNIDLETTDEEFKEFF 248
>gi|255940906|ref|XP_002561222.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585845|emb|CAP93573.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 734
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 46 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 105
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 106 LNYTLIKGKPCRIMWSQ 122
>gi|302658195|ref|XP_003020804.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
gi|291184669|gb|EFE40186.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
Length = 816
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 75 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 134
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 135 LNYTLIKGRPCRIMWSQ 151
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAAL 173
+YV +++Q++T+E GLF G++ + D + F FV F+D A AA+
Sbjct: 257 IYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAV 313
>gi|273068254|gb|ACZ97550.1| apoptosis-promoting RNA-binding protein [Ornithodoros moubata]
Length = 204
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 15/122 (12%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+R++ V++ ++D++I + + FS+ G ++ CRV D + + +
Sbjct: 16 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCRVATDEEANSKGYG 75
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCT 219
FV F E A A++ ML L K + F+PR E ER + + T
Sbjct: 76 FVHFETEEAANNAISKVNGML-------LNGKKVFV---GRFIPRKERERLLGDKARRFT 125
Query: 220 NI 221
N+
Sbjct: 126 NV 127
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 9/99 (9%)
Query: 98 GRKRLSGRAF-RAQRE----DSVRR--TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCG 150
G+K GR R +RE D RR VY+ + + +E+L +F G+V +V
Sbjct: 99 GKKVFVGRFIPRKERERLLGDKARRFTNVYIKNFGDELDDEKLVVIFDKYGKVTSAKVMV 158
Query: 151 DPHSVLR-FAFVEFAD-EHGARAALNLGGTMLGYYPVRV 187
D + R F FV F D E +A L G +G P+ V
Sbjct: 159 DENGKNRGFGFVSFEDPECAEKAVEELNGKDVGGKPLYV 197
>gi|294884876|gb|ADF47446.1| TIA1-like protein, partial [Dugesia japonica]
Length = 443
Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 101 RLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
+++ + F + +DS ++V +I N+ E L G F G+++D +V DP + +
Sbjct: 105 QMNSKNFLGKTDDSTPTQIFVGNIGSNVDEAILEGGFEHLGKIIDTKVIRDPDGKPKGYG 164
Query: 160 FVEFADEHGARAALN 174
FV F+ E A+ A++
Sbjct: 165 FVTFSSEFEAKNAID 179
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHG 168
++ E+ +T+Y+S + ++TEE L +F + G V C + + + A+VEF +E
Sbjct: 16 SKMENRNTKTIYISCLPNSVTEEDLLSIFENYGLCVSCELNSEECT----AYVEFDNETS 71
Query: 169 ARAALNLGGTMLGYYPVRVL 188
AR AL++ G +G ++++
Sbjct: 72 ARNALSMNGIEMGATRIQII 91
>gi|315052346|ref|XP_003175547.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
gi|311340862|gb|EFR00065.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
Length = 782
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 59 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 118
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 119 LNYTLIKGRPCRIMWSQ 135
>gi|339245105|ref|XP_003378478.1| polyadenylate-binding protein 2 [Trichinella spiralis]
gi|316972604|gb|EFV56277.1| polyadenylate-binding protein 2 [Trichinella spiralis]
Length = 561
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R+V+V ++D T E+L F CG + + C R G P FA+VEFAD+ A+A
Sbjct: 87 RSVFVGNVDYGATAEQLEAHFHGCGAINRVTILCDRYSGRPKG---FAYVEFADKESAQA 143
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L + T+ ++VL +T
Sbjct: 144 SLAMTDTLFRGRQIKVLEKRT 164
>gi|402587661|gb|EJW81596.1| nucleolysin TIAR [Wuchereria bancrofti]
Length = 440
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 9/72 (12%)
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV----CGDPHSVLRFAFV 161
F ED RTVYV ++D +ITE+ + LF G V +V DP +AFV
Sbjct: 82 GFDTGSEDHQPRTVYVGNLDPSITEDFITTLFGQIGAVTKTKVIFDGTNDP-----YAFV 136
Query: 162 EFADEHGARAAL 173
EFAD + A AL
Sbjct: 137 EFADHYTAAQAL 148
>gi|431907175|gb|ELK11241.1| Polyadenylate-binding protein 2 [Pteropus alecto]
Length = 208
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 74 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKESVRT 130
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L L ++ ++V+P +T
Sbjct: 131 SLALDESLFRGRQIKVIPKRT 151
>gi|425772940|gb|EKV11320.1| Polyadenylate-binding protein [Penicillium digitatum PHI26]
gi|425781989|gb|EKV19920.1| Polyadenylate-binding protein [Penicillium digitatum Pd1]
Length = 736
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 46 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 105
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 106 LNYTLIKGKPCRIMWSQ 122
>gi|392574075|gb|EIW67212.1| hypothetical protein TREMEDRAFT_40410 [Tremella mesenterica DSM
1558]
Length = 666
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 25/136 (18%)
Query: 71 NNFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRA-FRAQREDSVRRTV---------- 119
N + + + A+D N+ G+K +GRA R +R+ +R+T+
Sbjct: 267 NYVSHEAAEKAVDELNDKEV------NGQKLWAGRAQKRVERDTELRKTIEEKRQEFDAK 320
Query: 120 ------YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFAD-EHGARA 171
YV ++D ++RL F S G + C+V D V R F FV ++ E +A
Sbjct: 321 SAGVNLYVKNLDDEWDDDRLRAEFDSFGTITSCKVMKDERGVSRNFGFVCYSSPEEATKA 380
Query: 172 ALNLGGTMLGYYPVRV 187
+ G M+G P+ V
Sbjct: 381 VSEMNGKMIGSKPLYV 396
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T +++ ++D++I + L F++ G+++ C+V D R FA
Sbjct: 112 RIMWSQRDPALRKTGQGNIFIKNLDESIDNKALHDTFAAFGEILSCKVGVDEDGKSRGFA 171
Query: 160 FVEFADEHGARAAL-NLGGTML 180
FV + A AA+ + G ML
Sbjct: 172 FVHYQTGEAADAAIKGVDGMML 193
>gi|403363390|gb|EJY81440.1| RNA recognition motif protein [Oxytricha trifallax]
Length = 388
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEH 167
+ E ++ R++++ ++D T+ L F CGQ+ C + D HS L A++EFA
Sbjct: 218 EEELTLARSIFIKNVDYKTTKNDLEDHFKECGQITRCTIATDKHSGQPLGHAYIEFATLE 277
Query: 168 GARAALNLGGTMLGYYPVRVLPSK 191
GA+ + L ++ + V P +
Sbjct: 278 GAQRSKLLNESLFKGRQITVQPKR 301
>gi|290981403|ref|XP_002673420.1| polyadenylate binding protein [Naegleria gruberi]
gi|284087003|gb|EFC40676.1| polyadenylate binding protein [Naegleria gruberi]
Length = 571
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 31/162 (19%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVC---------GD 151
R +QR+ S+R++ +++ ++D++I + L FS+ G ++ C+VC GD
Sbjct: 78 RIMWSQRDPSIRKSGIGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVCQATKKGDNGGD 137
Query: 152 PHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDERE 210
+ FV F + A A+ + G +L V V P F+ ++E +
Sbjct: 138 NVESAGYGFVHFETQEAAEKAIAKINGMLLNGKQVFVGP-----------FVKKTERLKI 186
Query: 211 MCSR----TVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCM 248
+ + +Y N+D V + E+ + F GE++ M
Sbjct: 187 LSNEDSFTNIYVKNLDASVDEKELSEVFSKF--GEIQNAVVM 226
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 13/110 (11%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNL 175
++YV D+ + I+E L LF G ++ R+C D + L +A+V F + A AL+
Sbjct: 7 SLYVGDLHEEISEALLFDLFHEVGPIISIRICRDAMTRKSLGYAYVNFQNPQDAERALD- 65
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
L Y V+ +P + +P+ R+ ++ N+DK +
Sbjct: 66 ---TLNYASVKGIPIRIMWSQRDPSI-------RKSGIGNIFIKNLDKSI 105
Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LGG 177
+YV ++D ++ +ERL FS G + +V D F FV F A AL + G
Sbjct: 299 LYVKNLDDSVDDERLRQEFSKFGDITSAKVMSDNKQSRGFGFVCFKTPEAANKALTEMSG 358
Query: 178 TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAA 237
M+G P+ V ++ P L RS+ E + +R + +PQ + QFF A
Sbjct: 359 HMIGSKPLYVNFAQ-------PKELRRSQLEAQYNARKQ-----PQMIPQM-MPQFFIPA 405
Query: 238 CG 239
G
Sbjct: 406 QG 407
>gi|384491350|gb|EIE82546.1| hypothetical protein RO3G_07251 [Rhizopus delemar RA 99-880]
Length = 348
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 10/127 (7%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGA-RAALNL 175
V+V D+ I +E+LA FS G + + V DP S F FV F D+ A RA +
Sbjct: 119 VFVGDLAAEINDEKLAQAFSEFGTMSEAHVMWDPLSGKSRGFGFVAFRDKTDAERAIATM 178
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR-------TVYCTNIDKKVPQA 228
G LG P+R + P P + E+ + ++Y NI V Q
Sbjct: 179 NGEWLGTRPIRCNWATQKGQTAMPAPQPGQQLPYEVVVQQTPAYVTSIYVGNIPLNVSQN 238
Query: 229 EVKQFFE 235
++ Q F+
Sbjct: 239 DLVQPFQ 245
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCG----DPHSVLRFAFVEFADEHGARAAL 173
T+YV ++DQ +T+ L +F++ GQVV ++ + + + FVEFAD A A+
Sbjct: 19 TIYVGNLDQRVTDTMLNEIFTTVGQVVSVKIISVRKHNNFGAVNYGFVEFADPRVAEQAI 78
Query: 174 -NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSED 207
++ G + Y +R ++ + +NP ED
Sbjct: 79 QDMNGRKIFNYEIRANWAQPS-ANINPPLQMTKED 112
>gi|149063931|gb|EDM14201.1| poly(A) binding protein, nuclear 1, isoform CRA_c [Rattus
norvegicus]
Length = 194
Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 60 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKESVRT 116
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L L ++ ++V+P +T
Sbjct: 117 SLALDESLFRGRQIKVIPKRT 137
>gi|241622203|ref|XP_002408913.1| RNA-binding protein musashi, putative [Ixodes scapularis]
gi|215503069|gb|EEC12563.1| RNA-binding protein musashi, putative [Ixodes scapularis]
Length = 266
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVL--RFAFVEFADEHGARAAL 173
R++V+V ++ + +E L FS CGQV RV D + + F FV F+ A AL
Sbjct: 150 RKSVFVGNLPHEVQDEELWNCFSECGQVTGVRVIRDRETGMGKGFGFVTFSKLDAAALAL 209
Query: 174 NLGGTMLGYYPVR 186
+ G + P+R
Sbjct: 210 EMSGIHMSGRPIR 222
>gi|196010401|ref|XP_002115065.1| hypothetical protein TRIADDRAFT_28658 [Trichoplax adhaerens]
gi|190582448|gb|EDV22521.1| hypothetical protein TRIADDRAFT_28658 [Trichoplax adhaerens]
Length = 309
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAAL 173
+ + V+ + Q++T++ + LFSSCG+V+ C++ D H L +AFV++ D A A+
Sbjct: 7 QSNLIVNYLPQSMTQDEIQSLFSSCGKVISCKLVRDKNSHHSLGYAFVKYEDVADANKAI 66
Query: 174 -NLGGTMLGYYPVRVL---PSKTAILPVN 198
+L G L ++V PS AI N
Sbjct: 67 SSLNGLRLQSKVIKVSYARPSSAAIKNAN 95
>gi|363894957|gb|AEW42987.1| putative polyadenylate-binding protein 1, partial [Haliotis
diversicolor]
Length = 563
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C++ D +
Sbjct: 77 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIASDENG 136
Query: 155 VLRFAFVEFADEHGARAALNLGGTML 180
+ FV F E AR A+ ML
Sbjct: 137 SKGYGFVHFETEEAARQAIEKVNGML 162
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 21/114 (18%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D+ ++TE L FS+ G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD- 70
Query: 176 GGTM----LGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
TM + P+R++ S+ R R+ V+ N+DK +
Sbjct: 71 --TMNFDTIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|449494063|ref|XP_004159436.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 13/121 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALNL 175
++YV D+DQ++ E +L LF QVV RVC D L +A+V F+ A A+
Sbjct: 36 SLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAME- 94
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L + PV P + I +P+ R+ V+ N+D + ++ F
Sbjct: 95 ---HLNFTPVNGKPIRIMISNRDPSI-------RKSGYANVFIKNLDLSIDNKALRDTFA 144
Query: 236 A 236
A
Sbjct: 145 A 145
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFADEHGARAALN-LG 176
+Y+ ++D +I +E+L LFS G + C+V D H + + + FV F+ A ALN +
Sbjct: 319 LYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATKALNEMN 378
Query: 177 GTMLGYYPVRV 187
G M G P+ V
Sbjct: 379 GKMKGRKPLYV 389
>gi|326478130|gb|EGE02140.1| polyadenylate-binding protein [Trichophyton equinum CBS 127.97]
Length = 782
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 59 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 118
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 119 LNYTLIKGRPCRIMWSQ 135
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAAL 173
+YV +++Q++T+E GLF G++ + D + F FV F+D A AA+
Sbjct: 241 IYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAV 297
>gi|255637596|gb|ACU19123.1| unknown [Glycine max]
Length = 205
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFA 164
A +A +E++ R+V+V ++D T E + F SCG V + D + FA+VEF
Sbjct: 76 ASQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFV 135
Query: 165 DEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPR 204
+ + AL L + L ++VLP +T + P + PR
Sbjct: 136 EAEAVQEALLLNESELHGRQLKVLPKRTNV-PGMKQYRPR 174
>gi|356537017|ref|XP_003537028.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 502
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 99 RKRLSGRAFRAQREDSVRR----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
R+++ R F +R++ + + +YV +ID ++T++ L LFSSCG + +V D
Sbjct: 272 REQILHRQFEEKRKEQILKYQASNLYVKNIDDDVTDKELRDLFSSCGTITSVKVMRDDKG 331
Query: 155 VLR-FAFVEFAD-EHGARAALNLGGTMLGYYPVRV 187
+ + F FV F++ E +A + G M P+ +
Sbjct: 332 ISKGFGFVCFSNPEEANKAVRSFNGCMFHRKPLYI 366
Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 7/133 (5%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARA 171
D+ +Y+ ++D +ITE L FSS G+++ + D + + + FAFV + + AR
Sbjct: 187 DAKYTNLYIKNLDSDITEALLQEKFSSFGKIISLVISKDDNGLSKGFAFVNYENPDDARK 246
Query: 172 ALN-LGGTMLG---YYPVRVLPSKTAILPVNPTF-LPRSEDEREMCSRTVYCTNIDKKVP 226
A+ + G G Y R ++ F R E + + +Y NID V
Sbjct: 247 AMEAMNGLKFGSKNLYVARAQKKAEREQILHRQFEEKRKEQILKYQASNLYVKNIDDDVT 306
Query: 227 QAEVKQFFEAACG 239
E++ F ++CG
Sbjct: 307 DKELRDLF-SSCG 318
>gi|345307423|ref|XP_001512125.2| PREDICTED: embryonic polyadenylate-binding protein 2-like
[Ornithorhynchus anatinus]
Length = 412
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R+VYV ++D T E L F+SCG++ + C + G P +A++EFA E +A
Sbjct: 156 RSVYVGNVDYGGTAEELESHFNSCGEINRVTILCDKFSGHPKG---YAYIEFASESSVKA 212
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPT 200
A++L + ++VLP +T + ++ T
Sbjct: 213 AVDLDESTFRGRIIKVLPKRTNMPGISST 241
>gi|149063930|gb|EDM14200.1| poly(A) binding protein, nuclear 1, isoform CRA_b [Rattus
norvegicus]
Length = 184
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 60 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKESVRT 116
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L L ++ ++V+P +T
Sbjct: 117 SLALDESLFRGRQIKVIPKRT 137
>gi|291403571|ref|XP_002717950.1| PREDICTED: poly(A) binding protein, nuclear 1-like [Oryctolagus
cuniculus]
Length = 366
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFA 164
+R ++ R++YV ++D T E L F CG V + C + G P FA++EF+
Sbjct: 225 ERMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFS 281
Query: 165 DEHGARAALNLGGTMLGYYPVRVLPSKT 192
D+ R +L L ++ ++V+P +T
Sbjct: 282 DKESVRTSLALDESLFRGRQIKVIPKRT 309
>gi|281353092|gb|EFB28676.1| hypothetical protein PANDA_022375 [Ailuropoda melanoleuca]
Length = 152
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 30 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKESVRT 86
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L L ++ ++V+P +T
Sbjct: 87 SLALDESLFRGRQIKVIPKRT 107
>gi|225449617|ref|XP_002279438.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Vitis vinifera]
gi|296086279|emb|CBI31720.3| unnamed protein product [Vitis vinifera]
Length = 415
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 10/130 (7%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQV--VDCRVCGDPHSVLRFAFVEFADE 166
+Q VYV I TE+ + F SCG + VDC + + A + F E
Sbjct: 174 SQENGDASNKVYVGGIPYYSTEDDIRSYFDSCGTITEVDCMMFPESGKFRGIAIISFKTE 233
Query: 167 HGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS--RTVYCTNIDKK 224
A+ AL L G +G +++ P KT + F P EM +Y N+
Sbjct: 234 AAAKRALALDGADMGGLFLKIQPYKTTRANKSSDFAP------EMVEGYNRIYVGNLPWD 287
Query: 225 VPQAEVKQFF 234
+ + EV++FF
Sbjct: 288 ITEDEVRKFF 297
>gi|440893202|gb|ELR46056.1| Polyadenylate-binding protein 2, partial [Bos grunniens mutus]
Length = 189
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 55 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKESVRT 111
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L L ++ ++V+P +T
Sbjct: 112 SLALDESLFRGRQIKVIPKRT 132
>gi|358372137|dbj|GAA88742.1| polyadenylate-binding protein [Aspergillus kawachii IFO 4308]
Length = 763
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 113 LNYTLIKGKPCRIMWSQ 129
>gi|121702907|ref|XP_001269718.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
gi|158512635|sp|A1CRM1.1|PABP_ASPCL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119397861|gb|EAW08292.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
Length = 754
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 52 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 111
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 112 LNYTLIKGKPCRIMWSQ 128
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN 174
+Y+ +ID ++TEE +F G++ + DP R F FV ++ A+AA++
Sbjct: 234 IYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVD 290
>gi|154275140|ref|XP_001538421.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
gi|150414861|gb|EDN10223.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
Length = 732
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 116 LNYTLIKGKPCRIMWSQ 132
>gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ SVRR+ +++ ++D++I + L FSS G +V C+V D + +
Sbjct: 92 RVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYG 151
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRVLP 189
FV++A+E A+ A+ L G +L V V P
Sbjct: 152 FVQYANEESAQKAIEKLNGMLLNDKQVYVGP 182
Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 67/135 (49%), Gaps = 14/135 (10%)
Query: 66 FSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGR-KRLSGRA--FRAQREDSVRRT---- 118
F +N ADD + A+++ N ++ + GR ++ S R R + E +++
Sbjct: 241 FGFVNFENADDAAR-AVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKF 299
Query: 119 ----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFADEHGARAAL 173
+YV ++D +I++E+L +FS G V +V DP+ + + FV FA A A+
Sbjct: 300 QSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAM 359
Query: 174 N-LGGTMLGYYPVRV 187
+ L G M+ P+ V
Sbjct: 360 SQLSGKMIESKPLYV 374
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFAD-EHGARAALN 174
++YV D+D N+T+ +L F G VV RVC D L + +V F + + ARA
Sbjct: 21 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 80
Query: 175 LGGTMLGYYPVRVL 188
L L P+RV+
Sbjct: 81 LNYIPLYGKPIRVM 94
>gi|240256156|ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
gi|1171978|sp|P42731.1|PABP2_ARATH RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2
gi|304109|gb|AAA61780.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|7270360|emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis
thaliana]
gi|332660925|gb|AEE86325.1| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
Length = 629
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ SVRR+ +++ ++D++I + L FSS G +V C+V D + +
Sbjct: 108 RVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYG 167
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRVLP 189
FV++A+E A+ A+ L G +L V V P
Sbjct: 168 FVQYANEESAQKAIEKLNGMLLNDKQVYVGP 198
Score = 41.6 bits (96), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 67/135 (49%), Gaps = 14/135 (10%)
Query: 66 FSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGR-KRLSGRA--FRAQREDSVRRT---- 118
F +N ADD + A+++ N ++ + GR ++ S R R + E +++
Sbjct: 257 FGFVNFENADDAAR-AVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKF 315
Query: 119 ----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFADEHGARAAL 173
+YV ++D +I++E+L +FS G V +V DP+ + + FV FA A A+
Sbjct: 316 QSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAM 375
Query: 174 N-LGGTMLGYYPVRV 187
+ L G M+ P+ V
Sbjct: 376 SQLSGKMIESKPLYV 390
Score = 40.4 bits (93), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFAD-EHGARAALN 174
++YV D+D N+T+ +L F G VV RVC D L + +V F + + ARA
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 175 LGGTMLGYYPVRVL 188
L L P+RV+
Sbjct: 97 LNYIPLYGKPIRVM 110
>gi|356576979|ref|XP_003556607.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Glycine max]
Length = 248
Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 5/148 (3%)
Query: 103 SGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFV 161
S R + +++ +T+YV ++ + + + LF CG++VD R+ + + L F V
Sbjct: 48 SKRVATLKEQNAPPKTIYVRNLSYRVEQADMENLFKECGKIVDVRLHRNHNGRLNGFGQV 107
Query: 162 EFADEHGARAALNLGGTMLGYYPVRV-LPSKTAILPVNPTFLPRSEDEREMC-SRTVYCT 219
EFA A+ AL L T L P+ V L + + + S + E S TV+ T
Sbjct: 108 EFATAEAAKKALELHNTELLRRPIGVDLAEEKGEYTYSRSNWSNSFQKCERAQSPTVFVT 167
Query: 220 NIDKKVPQAEVKQFFEAACG--GEVRTL 245
D +P ++K E G GE++ +
Sbjct: 168 GFDSSLPAEKLKASLEEHFGSCGEIQRI 195
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 118 TVYVSDIDQNITEERL-AGL---FSSCGQV--VDCRVCGDPHSVLRFAFVEFADEHGARA 171
TV+V+ D ++ E+L A L F SCG++ + D +V FA + F D R
Sbjct: 163 TVFVTGFDSSLPAEKLKASLEEHFGSCGEIQRISIPTFPDSGAVKGFAHLGFKDVVSVRK 222
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPV 197
AL+L LG +P+R + I V
Sbjct: 223 ALHLDQNELGGFPLRAVAEMDVITGV 248
>gi|449446375|ref|XP_004140947.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 13/121 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALNL 175
++YV D+DQ++ E +L LF QVV RVC D L +A+V F+ A A+
Sbjct: 36 SLYVGDLDQSVNEGQLLELFGQVAQVVSIRVCRDQTRRQSLGYAYVNFSSHQDAVNAME- 94
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L + PV P + I +P+ R+ V+ N+D + ++ F
Sbjct: 95 ---HLNFTPVNGKPIRIMISNRDPSI-------RKSGYANVFIKNLDLSIDNKALRDTFA 144
Query: 236 A 236
A
Sbjct: 145 A 145
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFADEHGARAALN-LG 176
+Y+ ++D +I +E+L LFS G + C+V D H + + + FV F+ A ALN +
Sbjct: 319 LYIKNLDDHIDDEKLKELFSEYGTITSCKVMLDQHGLSKGSGFVAFSSPDEATKALNEMN 378
Query: 177 GTMLGYYPVRV 187
G M G P+ V
Sbjct: 379 GKMKGRKPLYV 389
>gi|428178044|gb|EKX46921.1| hypothetical protein GUITHDRAFT_162845 [Guillardia theta CCMP2712]
Length = 824
Score = 46.2 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHG 168
++ D +R +YVS + +N+++E + FS+ +V++ R+ D LR F +VEF D G
Sbjct: 648 EQRDVDQRVLYVSGLSKNVSKESIKDHFSTVAEVLEVRLMRDRDGNLRGFCYVEFKDRAG 707
Query: 169 ARAALNLGGTMLGYYPVRV 187
A +L + T+ +RV
Sbjct: 708 AELSLQMDQTVFQGKKLRV 726
>gi|391324923|ref|XP_003736991.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Metaseiulus
occidentalis]
Length = 558
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALNL 175
V+V I +++ E+ L LF CG++ D R+ DP + L +AF+ F ++ GA+ A+N+
Sbjct: 175 VFVGKIPKDMFEDELIPLFEKCGKIYDLRLMMDPLTGLNRGYAFITFCEKQGAQEAVNM 233
>gi|356512681|ref|XP_003525045.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 215
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFA 164
A +A +E++ R+V+V ++D T E + F SCG V + D + FA+VEF
Sbjct: 76 ASQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFV 135
Query: 165 DEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPR 204
+ + AL L + L ++VLP +T + P + PR
Sbjct: 136 EAEAVQEALLLNESELHGRQLKVLPKRTNV-PGMKQYRPR 174
>gi|307198835|gb|EFN79611.1| Probable splicing factor, arginine/serine-rich 7 [Harpegnathos
saltator]
Length = 455
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCG-QVVDCRVCGDPHSVLRFAFVEFADEH 167
++R + +RRT+ V+++D +++ E+L FS+ ++ R+C +A VE +++
Sbjct: 144 SRRIEEIRRTLIVANLDASVSAEQLLEFFSNNNVEIKYLRMCSRDSDTEHYALVELSEQG 203
Query: 168 GARAALNLGGTMLGYYPVRVLPSKTAI 194
AAL L G L P+++ S AI
Sbjct: 204 AVVAALLLNGKSLAERPIKIYHSTQAI 230
>gi|225678061|gb|EEH16345.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 755
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 55 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 115 LNYTLIKGKPCRIMWSQ 131
>gi|356514396|ref|XP_003525892.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 630
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 26/136 (19%)
Query: 72 NFAD-DNKQSAIDNFNNNRRRRNNFNQGRKRLSGRA---------FRAQREDSVRRTV-- 119
NFA+ ++ A++ N NF+ G++ G+A + + E S + TV
Sbjct: 249 NFANVEDAAKAVEALNGK-----NFD-GKEWYVGKAQKKSERELELKERNEQSTKETVDK 302
Query: 120 ------YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFADEHGARAA 172
Y+ ++D ++ +E L LFS G + C+V DP + R + FV F+ GA A
Sbjct: 303 YHGTNLYIKNLDDSVGDEELRELFSEFGTITSCKVMRDPSGISRGSGFVAFSIAEGASWA 362
Query: 173 LN-LGGTMLGYYPVRV 187
L + G M+ P+ V
Sbjct: 363 LGEMNGKMVAGKPLYV 378
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D+D ++ + +L LF+ QVV R+C D L + +V F++ A A+++
Sbjct: 25 SLYVGDLDHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGYVNFSNARDAAKAIDV 84
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
L + P L KT + + R R+ + V+ N+DK +
Sbjct: 85 ----LNFTP---LNGKT----IRIMYSIRDPSARKSGAANVFIKNLDKAI 123
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 72/163 (44%), Gaps = 30/163 (18%)
Query: 102 LSGRAFRAQ---REDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
L+G+ R R+ S R++ V++ ++D+ I + L FS+ G ++ C++ D
Sbjct: 90 LNGKTIRIMYSIRDPSARKSGAANVFIKNLDKAIDHKALFDTFSAFGNILSCKIATDASG 149
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+ FV+F E A+ A++ L G ++ V V P + R +D
Sbjct: 150 QSKGHGFVQFESEESAQNAIDKLNGMLINDKQVYVGPFQ------------RKQDRESAL 197
Query: 213 SRT----VYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIIL 251
S T VY N+ + +A++K F GE + +++
Sbjct: 198 SGTKFNNVYVKNLFEATTEADLKSIF-----GEYGAITSAVVM 235
>gi|156373168|ref|XP_001629405.1| predicted protein [Nematostella vectensis]
gi|156216405|gb|EDO37342.1| predicted protein [Nematostella vectensis]
Length = 817
Score = 46.2 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 66/129 (51%), Gaps = 10/129 (7%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEH 167
++ E S R V++S++ +ITE+ L FS G+V+D R+ + + +A+VEF +E
Sbjct: 593 SEEESSDPRKVFISNLLFSITEDHLRDKFSKLGEVLDVRIVKNMAGRSKGYAYVEFNNES 652
Query: 168 GARAALNLGGTMLGYYPVRVLPSKTAILPVNPTF--LPRSEDEREMCSRTVYCTNIDKKV 225
+AAL + + P+ + P NPT P S D+ T++ +N+
Sbjct: 653 TVQAALAMDREKMEGRPMFISPCVDK--AKNPTTFKFPTSLDK-----HTLFVSNLPFDA 705
Query: 226 PQAEVKQFF 234
++E+++ F
Sbjct: 706 KESEIEELF 714
>gi|304798|gb|AAA28828.1| polyadenylate-binding protein [Drosophila melanogaster]
gi|304800|gb|AAA02941.1| polyadenylate-binding protein [Drosophila melanogaster]
Length = 465
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
++S +T+YV ++D +++E+ L LFS+ G V C++ +P + +AF+E+++ A
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGND-PYAFIEYSNYQAATT 60
Query: 172 ALN 174
AL
Sbjct: 61 ALT 63
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALN 174
++V D+ I E L F+ G++ +CR+ DPH++ +AFV F + A A+
Sbjct: 97 IFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQ 154
>gi|148298695|ref|NP_001091823.1| poly A binding protein [Bombyx mori]
gi|111608107|gb|ABH10797.1| poly A binding protein [Bombyx mori]
Length = 603
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 20/129 (15%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D
Sbjct: 68 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALFDTFSAFGNILSCKVAQDETG 127
Query: 155 VLR-FAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+ + FV F E A ++ + G +L V V F+PR E E+E+
Sbjct: 128 ASKGYGFVHFETEEAANKSIEKVNGMLLNGKMVYV-----------GRFIPRKEREKELG 176
Query: 213 SRTVYCTNI 221
+ TN+
Sbjct: 177 EKAKLFTNV 185
Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FS+ G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPTDAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 63 MNFDIIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 101
>gi|302500992|ref|XP_003012489.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
gi|291176047|gb|EFE31849.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
Length = 801
Score = 46.2 bits (108), Expect = 0.013, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 59 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 118
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+ V+ N+D + + F
Sbjct: 119 LNYTLIKGRPCRIMWSQ------------RDPALRKTGQGNVFIKNLDTAIDNKALHDTF 166
Query: 235 EA 236
A
Sbjct: 167 AA 168
Score = 38.5 bits (88), Expect = 3.0, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAAL 173
+YV +++Q++T+E GLF G++ + D + F FV F+D A AA+
Sbjct: 241 IYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAV 297
>gi|392342422|ref|XP_003754583.1| PREDICTED: LOW QUALITY PROTEIN: splicing regulatory
glutamine/lysine-rich protein 1-like [Rattus norvegicus]
Length = 775
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 111 REDSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGA 169
R D +RRT++V +++ Q ++ +++ F G+V + D +FAFVEFAD++
Sbjct: 393 RTDEIRRTIHVGNLNSQTMSADQILEFFKQVGEVKFFPMADDETQPTQFAFVEFADQNSV 452
Query: 170 RAALNLGGTMLGYYPVRVLPSKTAIL 195
AL G G +++ S+ AI+
Sbjct: 453 PRALAFNGVTFGDRGLKINHSQNAIV 478
>gi|327299218|ref|XP_003234302.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
gi|326463196|gb|EGD88649.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
Length = 781
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEF---ADEHGARAA 172
++YV ++D ++TE L LFSS GQV RVC D L +A+V + AD G RA
Sbjct: 59 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTAD--GERAL 116
Query: 173 LNLGGTMLGYYPVRVLPSK 191
+L T++ P R++ S+
Sbjct: 117 EDLNYTLIKGRPCRIMWSQ 135
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAAL 173
+YV +++Q++T+E GLF G++ + D + F FV F+D A AA+
Sbjct: 241 IYVKNVEQDVTDEEFRGLFEKYGEITSATLSRDNETGKSRGFGFVNFSDHEAASAAV 297
>gi|194374387|dbj|BAG57089.1| unnamed protein product [Homo sapiens]
Length = 168
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 44 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKESVRT 100
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L L ++ ++V+P +T
Sbjct: 101 SLALDESLFRGRQIKVIPKRT 121
>gi|317025248|ref|XP_001388739.2| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
niger CBS 513.88]
gi|350637942|gb|EHA26298.1| hypothetical protein ASPNIDRAFT_46760 [Aspergillus niger ATCC 1015]
Length = 764
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 55 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 115 LNYTLIKGKPCRIMWSQ 131
>gi|193592023|ref|XP_001950415.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 20/141 (14%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+R++ V++ ++D+NI + + FS+ G ++ C+V D + +
Sbjct: 74 RIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDETGQSKGYG 133
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
FV F E A ++ ML L K + F+ R + E+E+ +
Sbjct: 134 FVHFDMEQSATQSIEKVNGML-------LNGKKVFV---GRFVGRKDREKELGQKAKLFT 183
Query: 216 -VYCTNIDKKVPQAEVKQFFE 235
VY NID+ V E+ + FE
Sbjct: 184 NVYIKNIDENVNDKELFEMFE 204
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 8/85 (9%)
Query: 98 GRKRLSGR-AFRAQREDSVRRT------VYVSDIDQNITEERLAGLFSSCGQVVDCRVC- 149
G+K GR R RE + + VY+ +ID+N+ ++ L +F G + C+V
Sbjct: 157 GKKVFVGRFVGRKDREKELGQKAKLFTNVYIKNIDENVNDKELFEMFEKYGSITSCKVMF 216
Query: 150 GDPHSVLRFAFVEFADEHGARAALN 174
D S F FV F D A A++
Sbjct: 217 KDDGSSRGFGFVAFEDPKEAEKAVS 241
>gi|156100785|ref|XP_001616086.1| RNA binding protein [Plasmodium vivax Sal-1]
gi|148804960|gb|EDL46359.1| RNA binding protein, putative [Plasmodium vivax]
Length = 611
Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
D + +Y+ ++ N +E+ + LF S G ++ + + AFVEF +E A+AA
Sbjct: 162 DVFSKIIYMENVPANCSEDDIKALFKSVGTTTSYKLQYNEQKKMNTAFVEFTNEEHAKAA 221
Query: 173 LNLGGTMLG 181
L L GT +G
Sbjct: 222 LLLNGTKIG 230
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL 173
S+ VYV ++ ++TE+ + F SC +++ P ++ +EF G A
Sbjct: 6 SIANVVYVKNLSTDVTEKDIKEKFESCDEIIGVVFKNFPGKNQKYCQIEFKSSEGITKAS 65
Query: 174 NLGGTMLGYYPVRVLPSKTAILPV--NPTF 201
L G +L P+ V T I P+ NP F
Sbjct: 66 RLNGELLLNVPMVV----TVIEPISQNPPF 91
>gi|194886456|ref|XP_001976617.1| GG19920 [Drosophila erecta]
gi|190659804|gb|EDV57017.1| GG19920 [Drosophila erecta]
Length = 307
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 15/121 (12%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-NLG 176
+Y+ +++++I + + FS G +++C V D R + FV F E ARAA+ +
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS--RTVYCTNIDKKVPQAEVKQFF 234
G + V V+ F+PR + E+E + + +Y N+ ++ + +++ F
Sbjct: 175 GMLCNNQKVHVVK-----------FIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMF 223
Query: 235 E 235
E
Sbjct: 224 E 224
>gi|392350797|ref|XP_003750759.1| PREDICTED: LOW QUALITY PROTEIN: splicing regulatory
glutamine/lysine-rich protein 1-like [Rattus norvegicus]
Length = 775
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 111 REDSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGA 169
R D +RRT++V +++ Q ++ +++ F G+V + D +FAFVEFAD++
Sbjct: 393 RTDEIRRTIHVGNLNSQTMSADQILEFFKQVGEVKFFPMADDETQPTQFAFVEFADQNSV 452
Query: 170 RAALNLGGTMLGYYPVRVLPSKTAIL 195
AL G G +++ S+ AI+
Sbjct: 453 PRALAFNGVTFGDRGLKINHSQNAIV 478
>gi|169771151|ref|XP_001820045.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|317144326|ref|XP_003189588.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|121923334|sp|Q2UK72.1|PABP_ASPOR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|83767904|dbj|BAE58043.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872693|gb|EIT81794.1| polyadenylate-binding protein [Aspergillus oryzae 3.042]
Length = 765
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 50 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 109
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 110 LNYTLIKGKPCRIMWSQ 126
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN 174
VY+ +IDQ++TEE LF G++ + D R F FV F+ A+AA++
Sbjct: 232 VYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVD 288
>gi|385281386|gb|AFI57844.1| polyA binding protein, partial [Cocos nucifera]
Length = 352
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFADEHGARAAL-NLG 176
+Y+ ++D +I +++L LFS G + C+V DP+ V R + FV F A AL +
Sbjct: 152 LYLKNLDDSIGDDKLRELFSEFGSITSCKVMRDPNGVSRGSGFVAFQSPDDASKALAEMN 211
Query: 177 GTMLGYYPVRV 187
G M+G P+ V
Sbjct: 212 GKMIGSKPLYV 222
>gi|34015145|gb|AAQ56342.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|125561054|gb|EAZ06502.1| hypothetical protein OsI_28747 [Oryza sativa Indica Group]
gi|125602953|gb|EAZ42278.1| hypothetical protein OsJ_26851 [Oryza sativa Japonica Group]
Length = 456
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNL 175
++YV D+D ++ + +L +FS G VV RVC D ++ L +A+V F+ A AL
Sbjct: 40 SLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARALE- 98
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
ML + P+ P+ + R R+ + ++ N+DK +
Sbjct: 99 ---MLNFTPING-------KPIRIMYSNRDPSSRKSGAANIFIKNLDKSI 138
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 119 VYVSDIDQNITE-ERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEF-ADEHGARAALNL 175
+Y+ ++D +I + E+L +F+ G + C+V D + V + + FV F + E +RA + +
Sbjct: 323 LYLKNLDDSIDDDEKLKEIFADFGTITSCKVMRDLNGVSKGSGFVAFKSAEDASRALVAM 382
Query: 176 GGTMLGYYPVRV 187
G M+G P+ V
Sbjct: 383 NGKMIGSKPLYV 394
>gi|226287551|gb|EEH43064.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 761
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 55 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 115 LNYTLIKGKPCRIMWSQ 131
>gi|24649513|ref|NP_732942.1| Rox8, isoform B [Drosophila melanogaster]
gi|24649515|ref|NP_732943.1| Rox8, isoform C [Drosophila melanogaster]
gi|7301090|gb|AAF56224.1| Rox8, isoform C [Drosophila melanogaster]
gi|7301091|gb|AAF56225.1| Rox8, isoform B [Drosophila melanogaster]
Length = 464
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
++S +T+YV ++D +++E+ L LFS+ G V C++ +P + +AF+E+++ A
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGND-PYAFIEYSNYQAATT 60
Query: 172 ALN 174
AL
Sbjct: 61 ALT 63
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARA 171
S ++V D+ I E L F+ G++ +CR+ DPH++ +AFV F + A
Sbjct: 92 SSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAEN 151
Query: 172 ALN-LGGTMLGYYPVRV 187
A+ + G +G +R
Sbjct: 152 AIQAMNGQWIGSRSIRT 168
>gi|238486326|ref|XP_002374401.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
gi|220699280|gb|EED55619.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
Length = 713
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 50 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 109
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 110 LNYTLIKGKPCRIMWSQ 126
Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN 174
VY+ +IDQ++TEE LF G++ + D R F FV F+ A+AA++
Sbjct: 232 VYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVD 288
>gi|301792821|ref|XP_002931377.1| PREDICTED: polyadenylate-binding protein 2-like [Ailuropoda
melanoleuca]
Length = 178
Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 44 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKESVRT 100
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L L ++ ++V+P +T
Sbjct: 101 SLALDESLFRGRQIKVIPKRT 121
>gi|449302325|gb|EMC98334.1| hypothetical protein BAUCODRAFT_86883 [Baudoinia compniacensis UAMH
10762]
Length = 802
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEF-ADEHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA
Sbjct: 62 SLYVGELDPSVTEAMLFELFSSVGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERALEE 121
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 122 LNYTLIKGRPCRIMWSQ 138
>gi|356525457|ref|XP_003531341.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 220
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFA 164
A +A +E++ R+V+V ++D T E + F SCG V + D + FA+VEF
Sbjct: 82 ASQANKEEADARSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFV 141
Query: 165 DEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPR 204
+ + AL L + L ++VLP +T + P + PR
Sbjct: 142 EAEAVQEALLLNESELHGRQLKVLPKRTNV-PGMKQYRPR 180
>gi|345567796|gb|EGX50724.1| hypothetical protein AOL_s00075g150 [Arthrobotrys oligospora ATCC
24927]
Length = 1471
Score = 46.2 bits (108), Expect = 0.015, Method: Composition-based stats.
Identities = 58/240 (24%), Positives = 93/240 (38%), Gaps = 37/240 (15%)
Query: 2 AAVADMPGDAAAANNTNNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQH 61
AA AD G+++A N ++ +KL L P E + +
Sbjct: 986 AAEADQNGESSAEKEKKNTRDR-------------EKLTVFAKNLPPDVDELTVRKFFKD 1032
Query: 62 --TDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTV 119
T + F++I ADDN +A F N + +KRL+GR Q TV
Sbjct: 1033 CGTINAFTMIE---ADDNSATASIEFQNAADVLAAQTRDKKRLNGREITVQL--GFNTTV 1087
Query: 120 YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV-LRFAFVEF-ADEHGARAALNLGG 177
YV++ E + LF CG +++ R ++ RF +V+F A E +A G
Sbjct: 1088 YVTNFPPTADENWIRELFKECGPILEVRFPSLKYNNHRRFCYVQFDASEDAEKATEMNGK 1147
Query: 178 TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC---SRTVYCTNIDKKVPQAEVKQFF 234
+ G+ V L P + ER R V+ NID + ++++ F
Sbjct: 1148 DVEGFKLVSKLSD------------PNVKQERSGAVYEGREVFVRNIDYAATEDDIRELF 1195
>gi|295674319|ref|XP_002797705.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280355|gb|EEH35921.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 822
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 55 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 115 LNYTLIKGKPCRIMWSQ 131
>gi|195383760|ref|XP_002050594.1| GJ22239 [Drosophila virilis]
gi|194145391|gb|EDW61787.1| GJ22239 [Drosophila virilis]
Length = 301
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 15/121 (12%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-NLG 176
+Y+ +++++I + + FS G +++C V D R + FV F E ARAA+ +
Sbjct: 109 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVN 168
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS--RTVYCTNIDKKVPQAEVKQFF 234
G + V V+ F+PR + E+E + + +Y N+ ++ + +++ F
Sbjct: 169 GMLCNNQKVHVVK-----------FIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMF 217
Query: 235 E 235
E
Sbjct: 218 E 218
>gi|225428865|ref|XP_002285190.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147839912|emb|CAN65906.1| hypothetical protein VITISV_004873 [Vitis vinifera]
Length = 648
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 15/125 (12%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172
V ++YV D++ N+ + +L LFS G VV RVC D + L + +V +++ A A
Sbjct: 28 VTTSLYVGDLELNVNDSQLYDLFSQMGAVVSVRVCRDLSTRRSLGYGYVNYSNPQDAARA 87
Query: 173 LN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
L+ L T L P+R++ S R R+ + ++ N+DK + +
Sbjct: 88 LDVLNFTPLNGKPIRIMYSH------------RDPSIRKSGTGNIFIKNLDKGIDHKALH 135
Query: 232 QFFEA 236
F A
Sbjct: 136 DTFSA 140
Score = 40.8 bits (94), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 9/97 (9%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
L+G+ R + R+ S+R++ +++ ++D+ I + L FS+ G ++ C+V D
Sbjct: 96 LNGKPIRIMYSHRDPSIRKSGTGNIFIKNLDKGIDHKALHDTFSAFGNILSCKVATDASG 155
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLP 189
+ + FV+F E A+ A++ L G +L V V P
Sbjct: 156 MSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQVFVGP 192
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFAD-EHGARAALNLG 176
+Y+ ++D +I +++L LF+ G + C+V DP+ + R + FV F+ E +RA +
Sbjct: 314 LYIKNLDDSIGDDKLKELFAQFGTITSCKVMRDPNGLSRGSGFVAFSSPEEASRALAEMN 373
Query: 177 GTMLGYYPVRV 187
M+ P+ V
Sbjct: 374 SKMVVSKPLYV 384
>gi|158512764|sp|A2Q848.1|PABP_ASPNC RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|134054831|emb|CAK43671.1| unnamed protein product [Aspergillus niger]
Length = 731
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 55 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 115 LNYTLIKGKPCRIMWSQ 131
>gi|50293737|ref|XP_449280.1| hypothetical protein [Candida glabrata CBS 138]
gi|74690665|sp|Q6FKG4.1|PABP_CANGA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49528593|emb|CAG62254.1| unnamed protein product [Candida glabrata]
Length = 579
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 111 REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHG 168
+ ++V ++YV D+D +++E L +FS G V RVC D + L +A+V F D
Sbjct: 29 QSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDA 88
Query: 169 ARAALNLGGTMLGYYPVR 186
A+ A+ L + P++
Sbjct: 89 AKTAIE----KLNFTPIK 102
>gi|348577533|ref|XP_003474538.1| PREDICTED: polyadenylate-binding protein 2-like [Cavia porcellus]
Length = 306
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFA 164
+R ++ R++YV ++D T E L F CG V + C + G P FA++EF+
Sbjct: 165 ERMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFS 221
Query: 165 DEHGARAALNLGGTMLGYYPVRVLPSKT 192
D+ R +L L ++ ++V+P +T
Sbjct: 222 DKESVRTSLALDESLFRGRQIKVIPKRT 249
>gi|239615396|gb|EEQ92383.1| polyadenylate-binding protein [Ajellomyces dermatitidis ER-3]
gi|327356743|gb|EGE85600.1| polyadenylate-binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 783
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 56 SLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 116 LNYTLIKGKPCRIMWSQ 132
>gi|70990636|ref|XP_750167.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|74669855|sp|Q4WK03.1|PABP_ASPFU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|66847799|gb|EAL88129.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|159130644|gb|EDP55757.1| polyadenylate-binding protein [Aspergillus fumigatus A1163]
Length = 753
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 113 LNYTLIKGKPCRIMWSQ 129
Score = 37.4 bits (85), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN 174
VY+ +IDQ +T+E +F G++ + D R F FV F+ A+AA++
Sbjct: 235 VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVD 291
>gi|212722530|ref|NP_001132591.1| uncharacterized protein LOC100194063 [Zea mays]
gi|194694844|gb|ACF81506.1| unknown [Zea mays]
gi|195635091|gb|ACG37014.1| polyadenylate-binding protein 2 [Zea mays]
gi|413938966|gb|AFW73517.1| polyadenylate-binding protein 2 [Zea mays]
Length = 212
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALNL 175
R+VYV ++D T E + F +CG V + D + FA+VEF ++ G + ALNL
Sbjct: 86 RSVYVGNVDYACTPEEVQQHFQACGTVNRVTILTDKFGQPKGFAYVEFLEQEGVQEALNL 145
Query: 176 GGTMLGYYPVRVLPSKTAI 194
+ L ++V P +T +
Sbjct: 146 NESELHGRQIKVAPKRTNV 164
>gi|24649519|ref|NP_732945.1| Rox8, isoform D [Drosophila melanogaster]
gi|442620772|ref|NP_732944.2| Rox8, isoform E [Drosophila melanogaster]
gi|442620774|ref|NP_001262897.1| Rox8, isoform G [Drosophila melanogaster]
gi|442620776|ref|NP_001262898.1| Rox8, isoform H [Drosophila melanogaster]
gi|23172126|gb|AAN13978.1| Rox8, isoform D [Drosophila melanogaster]
gi|211938549|gb|ACJ13171.1| FI04408p [Drosophila melanogaster]
gi|440217818|gb|AAN13977.2| Rox8, isoform E [Drosophila melanogaster]
gi|440217819|gb|AGB96277.1| Rox8, isoform G [Drosophila melanogaster]
gi|440217820|gb|AGB96278.1| Rox8, isoform H [Drosophila melanogaster]
Length = 470
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
++S +T+YV ++D +++E+ L LFS+ G V C++ +P + +AF+E+++ A
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGND-PYAFIEYSNYQAATT 60
Query: 172 ALN 174
AL
Sbjct: 61 ALT 63
Score = 40.4 bits (93), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARA 171
S ++V D+ I E L F+ G++ +CR+ DPH++ +AFV F + A
Sbjct: 92 SSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAEN 151
Query: 172 ALN-LGGTMLGYYPVRV 187
A+ + G +G +R
Sbjct: 152 AIQAMNGQWIGSRSIRT 168
>gi|339253200|ref|XP_003371823.1| polyadenylate-binding protein 2 [Trichinella spiralis]
gi|316967866|gb|EFV52232.1| polyadenylate-binding protein 2 [Trichinella spiralis]
Length = 208
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R+V+V ++D E L F CG + + C R G P FA++EFAD+ ARA
Sbjct: 64 RSVFVGNVDYGAAAEELEAHFHGCGAINRITILCDRYSGRPKG---FAYIEFADKESARA 120
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L + T+ ++V+ +T
Sbjct: 121 SLAMTDTLFRGRQIKVVEKRT 141
>gi|261199248|ref|XP_002626025.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
gi|239594233|gb|EEQ76814.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
Length = 783
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 56 SLYVGELDSSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 116 LNYTLIKGKPCRIMWSQ 132
>gi|119496945|ref|XP_001265244.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
gi|158512647|sp|A1D4K4.1|PABP_NEOFI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119413406|gb|EAW23347.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
Length = 751
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 113 LNYTLIKGKPCRIMWSQ 129
Score = 37.4 bits (85), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN 174
VY+ +IDQ +T+E +F G++ + D R F FV F+ A+AA++
Sbjct: 235 VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVD 291
>gi|19922904|ref|NP_611924.1| CG4612, isoform A [Drosophila melanogaster]
gi|386768569|ref|NP_001246493.1| CG4612, isoform C [Drosophila melanogaster]
gi|195353161|ref|XP_002043074.1| GM11822 [Drosophila sechellia]
gi|195586434|ref|XP_002082979.1| GD24944 [Drosophila simulans]
gi|7291799|gb|AAF47219.1| CG4612, isoform A [Drosophila melanogaster]
gi|16648374|gb|AAL25452.1| LD36772p [Drosophila melanogaster]
gi|194127162|gb|EDW49205.1| GM11822 [Drosophila sechellia]
gi|194194988|gb|EDX08564.1| GD24944 [Drosophila simulans]
gi|220946122|gb|ACL85604.1| CG4612-PA [synthetic construct]
gi|220955844|gb|ACL90465.1| CG4612-PA [synthetic construct]
gi|383302680|gb|AFH08246.1| CG4612, isoform C [Drosophila melanogaster]
Length = 307
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 15/121 (12%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-NLG 176
+Y+ +++++I + + FS G +++C V D R + FV F E ARAA+ +
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS--RTVYCTNIDKKVPQAEVKQFF 234
G + V V+ F+PR + E+E + + +Y N+ ++ + +++ F
Sbjct: 175 GMLCNNQKVHVVK-----------FIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMF 223
Query: 235 E 235
E
Sbjct: 224 E 224
>gi|195489681|ref|XP_002092839.1| GE11444 [Drosophila yakuba]
gi|194178940|gb|EDW92551.1| GE11444 [Drosophila yakuba]
Length = 307
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 15/121 (12%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-NLG 176
+Y+ +++++I + + FS G +++C V D R + FV F E ARAA+ +
Sbjct: 115 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 174
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS--RTVYCTNIDKKVPQAEVKQFF 234
G + V V+ F+PR + E+E + + +Y N+ ++ + +++ F
Sbjct: 175 GMLCNNQKVHVVK-----------FIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMF 223
Query: 235 E 235
E
Sbjct: 224 E 224
>gi|326526505|dbj|BAJ97269.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNL 175
++YV D+D ++ + +L +FS G VV RVC D ++ L +A+V F+ A AL
Sbjct: 43 SLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALE- 101
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
ML + PV P + + R R+ + ++ N+DK +
Sbjct: 102 ---MLNFTPVNGKPIRI-------MYSNRDPSSRKSGAANIFIKNLDKSI 141
>gi|294933484|ref|XP_002780736.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239890777|gb|EER12531.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 226
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV--LRFAFVEFADE 166
AQ + +R+VYV +D E L F SCG + + D +S FA++EF DE
Sbjct: 93 AQSPEQDKRSVYVGSVDYGAAPEELQEHFKSCGPIQRITIMVDKYSGHPKGFAYIEFGDE 152
Query: 167 HGARAALNLGGTMLGYYPVRVLPSKT 192
+ AL L TM ++VL +T
Sbjct: 153 AAVQNALLLNDTMFRGRQLKVLQKRT 178
>gi|195029531|ref|XP_001987626.1| GH22019 [Drosophila grimshawi]
gi|193903626|gb|EDW02493.1| GH22019 [Drosophila grimshawi]
Length = 304
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 15/121 (12%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-NLG 176
+Y+ +++++I + + FS G +++C V D R + FV F E ARAA+ +
Sbjct: 112 IYIKNLERSIDNKAVYETFSVFGNILNCNVAKDEEGNSRGYGFVHFDSEEAARAAIEKVN 171
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS--RTVYCTNIDKKVPQAEVKQFF 234
G + V V+ F+PR + E+E + + +Y N+ ++ + +++ F
Sbjct: 172 GMLCNNQKVHVVK-----------FIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMF 220
Query: 235 E 235
E
Sbjct: 221 E 221
>gi|431894424|gb|ELK04224.1| Polyadenylate-binding protein 1-like protein [Pteropus alecto]
Length = 512
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 16/134 (11%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ +R++ +++ +++ +I + L FS+ G ++ C+V D H F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSRGFGF 142
Query: 161 VEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCT 219
V F A+ A++ + G +L V V F R E E E+ +R + T
Sbjct: 143 VHFETHEAAQLAISTMNGMLLNDRKVFV-----------GHFKSRQEREAELGARAMEFT 191
Query: 220 NIDKKVPQAEVKQF 233
NI K Q ++ ++
Sbjct: 192 NIYVKNLQVDMDEW 205
Score = 40.8 bits (94), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 16/170 (9%)
Query: 33 EFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHH--FSVINNNFADDNKQSAID-NFNNNR 89
E+ +Q+L F +P K + H F +N ++ +++ +D N R
Sbjct: 204 EWGLQELFSQFDWSSP-GKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMDMNGKEVR 262
Query: 90 RRRNNFNQGRKRLS-----GRAFRAQREDSVRR------TVYVSDIDQNITEERLAGLFS 138
R + +KR+ R F ++D + R +YV ++D +I +E+L FS
Sbjct: 263 GRLLYVGRAQKRMERQNELKRKFEQMKQDRLNRYHVRGVNLYVKNLDDSINDEKLRKEFS 322
Query: 139 SCGQVVDCRVCGDPHSVLRFAFVEFAD-EHGARAALNLGGTMLGYYPVRV 187
G + +V + F FV F+ E +A + G ++G P+ V
Sbjct: 323 PYGMITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 372
>gi|17944383|gb|AAL48083.1| RE71384p [Drosophila melanogaster]
Length = 470
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
++S +T+YV ++D +++E+ L LFS+ G V C++ +P + +AF+E+++ A
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGND-PYAFIEYSNYQAATT 60
Query: 172 ALN 174
AL
Sbjct: 61 ALT 63
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARA 171
S ++V D+ I E L F+ G++ +CR+ DPH++ +AFV F + A
Sbjct: 92 SSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAEN 151
Query: 172 ALN-LGGTMLGYYPVRV 187
A+ + G +G +R
Sbjct: 152 AIQAMNGQWIGSRSIRT 168
>gi|14029147|gb|AAK51123.1| polyadenylated mRNA-binding protein 2 [Anemia phyllitidis]
Length = 472
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 82/180 (45%), Gaps = 15/180 (8%)
Query: 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQS 80
K NN+ K E T + L+++F P++ + ++ F +N ADD +
Sbjct: 28 KFNNVFVKNLAEETTDEDLMEVFGGFGPISSAVVMRDANGNS-KCFGFVNFKNADDAAK- 85
Query: 81 AIDNFNN----------NRRRRNNFNQGRKRLSGRAFRAQREDSVRRT-VYVSDIDQNIT 129
A++N N R ++ + + ++ R +R + + +Y+ ++D +I
Sbjct: 86 AVENINGKVFNDKEWYVGRAQKKSEREAELKVKFEQLRKERTEKFQGVNLYLKNVDDSID 145
Query: 130 EERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRV 187
+E+L LFS G V C++ P ++ FV + + A A+N + G M+G P+ V
Sbjct: 146 DEKLKELFSGFGTVNSCKIMRSPQGQIVGSGFVALSSKDEAMRAVNEMNGKMVGSKPLYV 205
>gi|453085206|gb|EMF13249.1| polyadenylate binding protein [Mycosphaerella populorum SO2202]
Length = 760
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEF-ADEHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA
Sbjct: 54 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERALEE 113
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 114 LNYTLIKGKPCRIMWSQ 130
>gi|195331490|ref|XP_002032434.1| GM23518 [Drosophila sechellia]
gi|194121377|gb|EDW43420.1| GM23518 [Drosophila sechellia]
Length = 464
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
++S +T+YV ++D +++E+ L LFS+ G V C++ +P + +AF+E+++ A
Sbjct: 2 DESQPKTLYVGNLDTSVSEDLLIALFSTMGPVKSCKIIREPGND-PYAFIEYSNYQAAST 60
Query: 172 ALN 174
AL
Sbjct: 61 ALT 63
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARA 171
S ++V D+ I E L F+ G++ +CR+ DPH++ +AFV F + A
Sbjct: 92 SSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAEN 151
Query: 172 ALN-LGGTMLGYYPVRV 187
A+ + G +G +R
Sbjct: 152 AIQAMNGQWIGSRSIRT 168
>gi|38541222|gb|AAH62832.1| Pabpc1a protein, partial [Danio rerio]
Length = 327
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 24/146 (16%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ +++ ++D++I + L FS+ G ++ C+V D +
Sbjct: 77 IKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG 136
Query: 155 VLRFAFVEFADEHGA-RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
+ FV F A RA + G +L V V F R E E EM +
Sbjct: 137 SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAEMGA 185
Query: 214 RT-----VYCTNIDKKVPQAEVKQFF 234
R VY N + + ++K+ F
Sbjct: 186 RAKEFTNVYIKNFGEDMDDEKLKEIF 211
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ PVR++ S+ +P+ R+ ++ N+DK + + F
Sbjct: 72 MNFDVIKGRPVRIMWSQR-----DPSL-------RKSGVGNIFIKNLDKSIDNKALYDTF 119
Query: 235 EA 236
A
Sbjct: 120 SA 121
>gi|258565691|ref|XP_002583590.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
gi|237907291|gb|EEP81692.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
Length = 765
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 55 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 115 LNYTLIKGRPCRIMWSQ 131
>gi|452984370|gb|EME84127.1| hypothetical protein MYCFIDRAFT_202901 [Pseudocercospora fijiensis
CIRAD86]
Length = 715
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEF-ADEHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSAADGERALEE 115
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 116 LNYTLIKGKPCRIMWSQ 132
Score = 37.7 bits (86), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D H + +
Sbjct: 127 RIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAVDEHGNSKGYG 186
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRV---LPSKTAILPVNPTFLPRSEDEREMCSR- 214
FV + A A+ ++ G +L V V +P K R EM +
Sbjct: 187 FVHYETSDAANQAIKSVNGMLLNEKKVFVGHHIPKKD-----------RMSKFEEMKANF 235
Query: 215 -TVYCTNIDKKVPQAEVKQFFE 235
+Y NID + E ++ FE
Sbjct: 236 TNIYVKNIDAETTDDEFRELFE 257
>gi|392558545|gb|EIW51732.1| polyadenylate binding protein [Trametes versicolor FP-101664 SS1]
Length = 631
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 17/144 (11%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GRA R +QR+ ++R+T +++ ++D+ I + L F++ G V+ C+V D H
Sbjct: 73 IKGRACRIMWSQRDPALRKTGQGNIFIKNLDEQIDNKALHDTFAAFGNVLSCKVATDEHG 132
Query: 155 VLR-FAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
+ + FV + A A+ ML L K + + + R EM +
Sbjct: 133 RSKGYGFVHYETAEAAETAIKAVNGML-------LNDKKVYVGHHISRKERQSKIEEMKN 185
Query: 214 R--TVYCTNIDKKVPQAEVKQFFE 235
+ +Y N+D +V Q E Q FE
Sbjct: 186 QFTNIYVKNVDPEVTQEEFVQLFE 209
Score = 40.8 bits (94), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 19/110 (17%)
Query: 97 QGRKRLSGRA-FRAQREDSVRRT----------------VYVSDIDQNITEERLAGLFSS 139
+GRK RA +A+RE+ +RR+ +Y+ +++ +I +ERL G F
Sbjct: 254 KGRKLFVARAQKKAEREEELRRSYEQAKMEKMSKYQGVNLYIKNLEDDIDDERLRGEFEP 313
Query: 140 CGQVVDCRVCGDPHSVLR-FAFVEFAD-EHGARAALNLGGTMLGYYPVRV 187
G + +V D + + F FV F+ + +A + M+G P+ V
Sbjct: 314 FGNITSAKVMRDEKGISKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYV 363
>gi|195429621|ref|XP_002062856.1| GK19472 [Drosophila willistoni]
gi|194158941|gb|EDW73842.1| GK19472 [Drosophila willistoni]
Length = 297
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 15/121 (12%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-NLG 176
+Y+ +++++I + + FS G +++C V D R + FV F E ARAA+ +
Sbjct: 105 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 164
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS--RTVYCTNIDKKVPQAEVKQFF 234
G + V V+ F+PR + E+E + + +Y N+ ++ + +++ F
Sbjct: 165 GMLCNNQKVHVVK-----------FIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMF 213
Query: 235 E 235
E
Sbjct: 214 E 214
>gi|327289636|ref|XP_003229530.1| PREDICTED: embryonic polyadenylate-binding protein 2-like, partial
[Anolis carolinensis]
Length = 262
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 56/103 (54%), Gaps = 11/103 (10%)
Query: 106 AFRAQREDSV---RRTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLR 157
AF E+ V +R++YV ++D T E+L F++CG++ + C + G P
Sbjct: 127 AFHRMTEEKVEADQRSIYVGNVDYGGTAEQLESHFNNCGKINRVTILCDKFSGHPKG--- 183
Query: 158 FAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPT 200
+A++EFAD+ + A+ L ++ ++VLP +T + ++ T
Sbjct: 184 YAYIEFADKSSVKVAMELDESVFRDRVIKVLPKRTNMPGISTT 226
>gi|115390925|ref|XP_001212967.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
gi|121739603|sp|Q0CR95.1|PABP_ASPTN RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|114193891|gb|EAU35591.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
Length = 753
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 49 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 108
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 109 LNYTLIKGKPCRIMWSQ 125
>gi|327287898|ref|XP_003228665.1| PREDICTED: polyadenylate-binding protein 2-like [Anolis
carolinensis]
Length = 196
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 61 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKG---FAYIEFSDKESVRT 117
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L L ++ ++V+P +T
Sbjct: 118 SLALDESLFRGRQIKVIPKRT 138
>gi|320032897|gb|EFW14847.1| polyadenylate-binding protein [Coccidioides posadasii str.
Silveira]
Length = 768
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 116 LNYTLIKGRPCRIMWSQ 132
>gi|303322729|ref|XP_003071356.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240111058|gb|EER29211.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 768
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 116 LNYTLIKGRPCRIMWSQ 132
>gi|318087158|gb|ADV40171.1| putative polyA binding protein cytoplasmic 1 isoform 1 [Latrodectus
hesperus]
Length = 217
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 25/147 (17%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D++I + + FS+ G ++ C+V D S
Sbjct: 79 VKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGNILSCKVATDEES 138
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+ + FV F E A A+ + G +L V V F+PRSE E+++
Sbjct: 139 NSKGYGFVHFETEEAANNAIQKVNGMLLNGRKVFV-----------GKFVPRSEREKQLG 187
Query: 213 SRT-----VYCTNIDKKVPQAEVKQFF 234
+ VY N + ++++
Sbjct: 188 QKARRFMNVYIKNFGDDLDDEKLREML 214
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 14 SLYVGDLHNDVTEAMLFEKFSSAGPVLSIRVCRDLIARRSLGYAYVNFQQPVDAERALDT 73
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ M+ P+R++ S+ R R+ V+ N+DK + + F
Sbjct: 74 MNFDMVKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSIDNKAMYDTF 121
Query: 235 EA 236
A
Sbjct: 122 SA 123
>gi|119189891|ref|XP_001245552.1| hypothetical protein CIMG_04993 [Coccidioides immitis RS]
gi|121937111|sp|Q1DXH0.1|PABP_COCIM RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|392868454|gb|EAS34245.2| polyadenylate-binding protein, cytoplasmic and nuclear
[Coccidioides immitis RS]
Length = 768
Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 116 LNYTLIKGRPCRIMWSQ 132
>gi|115533906|ref|NP_495022.2| Protein EEED8.4 [Caenorhabditis elegans]
gi|114152917|sp|Q09295.2|YQO4_CAEEL RecName: Full=Putative RNA-binding protein EEED8.4
gi|351060984|emb|CCD68731.1| Protein EEED8.4 [Caenorhabditis elegans]
Length = 191
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 96 NQGRKRLSGRAFRAQREDSVR----RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD 151
N+ K L A+ E+ + ++V++ ++D N T E + F CGQ+V + D
Sbjct: 30 NKMAKHLESAAYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKD 89
Query: 152 PHSVLR--FAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAI 194
+ + FA++EF D AL + G++ P+ V +T I
Sbjct: 90 KFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNI 134
>gi|389610655|dbj|BAM18939.1| polyA-binding protein [Papilio polytes]
Length = 611
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 20/129 (15%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+ I + + FS+ G ++ C+V D
Sbjct: 77 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCKVAQDETG 136
Query: 155 VLR-FAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+ + FV F E A ++ + G +L V V F+PR E E+E+
Sbjct: 137 ASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV-----------GRFIPRKEREKELG 185
Query: 213 SRTVYCTNI 221
+ TN+
Sbjct: 186 EKAKLFTNV 194
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAAL-N 174
++YV D+ +ITE L FS+ G V+ RVC D L +A+V F A AL
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALEG 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDIIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKTI 110
>gi|320168622|gb|EFW45521.1| RNP domain-containing protein [Capsaspora owczarzaki ATCC 30864]
Length = 224
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADE 166
A +ED R+V+V ++D + T E + F+SCG V + D ++ FA++EFAD+
Sbjct: 86 ASKEDIDARSVFVGNVDYSSTPEEVQAHFASCGTVNRVTILVDKYTGHPKGFAYLEFADK 145
Query: 167 HGARAALNLGGTMLGYYPVRVLPSKTAI 194
A++L T+ ++V P +T +
Sbjct: 146 DAVNNAMSLNDTVFRGRQLKVTPKRTNV 173
>gi|407920118|gb|EKG13336.1| hypothetical protein MPH_09618 [Macrophomina phaseolina MS6]
Length = 768
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEF-ADEHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + + G +A
Sbjct: 58 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSDDGEKALEE 117
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 118 LNYTLIKGKPCRIMWSQ 134
>gi|254578926|ref|XP_002495449.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
gi|238938339|emb|CAR26516.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
Length = 587
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 13/115 (11%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADE 166
+Q+ ++ ++YV ++D ++E L +FS G V RVC D + L +A+V F D
Sbjct: 32 SQKVETSTASLYVGELDPTVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDY 91
Query: 167 HGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNI 221
R A+ L Y P++ P + +P+ R+ S ++ N+
Sbjct: 92 EAGRQAIE----KLNYTPIKGQPCRIMWSQRDPSL-------RKKGSGNIFIKNL 135
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 13/138 (9%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRF 158
R +QR+ S+R+ +++ ++ +I + L FS G ++ C++ D + F
Sbjct: 112 RIMWSQRDPSLRKKGSGNIFIKNLHADIDNKALHDTFSVFGNILSCKIATDEVTGNSKGF 171
Query: 159 AFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVY 217
FV F + AR A++ + G +L V V P V+ +E + VY
Sbjct: 172 GFVHFESDEAAREAIDAINGMLLNGQEVYVAPH------VSRKDRQSKLEEAKANFTNVY 225
Query: 218 CTNIDKKVPQAEVKQFFE 235
NI + P+ E ++FF+
Sbjct: 226 IKNISLETPEQEFEEFFK 243
>gi|194742700|ref|XP_001953839.1| GF17967 [Drosophila ananassae]
gi|190626876|gb|EDV42400.1| GF17967 [Drosophila ananassae]
Length = 471
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
++S +T+YV ++D +++E+ L LFS+ G V C++ +P + +AF+E++ A
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALFSTMGHVKSCKIIREPGND-PYAFIEYSTYQAATT 60
Query: 172 ALN 174
AL
Sbjct: 61 ALT 63
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALN-L 175
++V D+ I E L F+ G++ +CR+ DPH++ +AFV F + A A+ +
Sbjct: 97 IFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAITAM 156
Query: 176 GGTMLGYYPVRV 187
G +G +R
Sbjct: 157 NGQWIGSRSIRT 168
>gi|452843390|gb|EME45325.1| hypothetical protein DOTSEDRAFT_71152 [Dothistroma septosporum
NZE10]
Length = 785
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEF-ADEHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA
Sbjct: 57 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSANDGERALEE 116
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 117 LNYTLIKGKPCRIMWSQ 133
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 18/140 (12%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D H + +
Sbjct: 128 RIMWSQRDPALRKTGQGNVFIKNLDGAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYG 187
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRV---LPSKTAILPVNPTFLPRSEDEREMCSRT 215
FV + A +A+ ++ G +L V V +P K + +E +
Sbjct: 188 FVHYETAEAANSAIKSVNGMLLNEKKVFVGHHIPKKDRMSKF---------EEMKANFTN 238
Query: 216 VYCTNIDKKVPQAEVKQFFE 235
+Y NID + E + FE
Sbjct: 239 IYVKNIDPEATDDEFRALFE 258
>gi|443895761|dbj|GAC73106.1| polyadenylate-binding protein [Pseudozyma antarctica T-34]
Length = 556
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ ++RRT +++ ++D I + L F++ G ++ C+V L + F
Sbjct: 118 RIMWSQRDPALRRTGQGNIFIKNLDAGIDNKALHDTFAAFGNILSCKVATSESGSLGYGF 177
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC-SRT--- 215
V + A AA+ ++ G +L V V +PR E + ++ SR
Sbjct: 178 VHYETAEAADAAIKHVNGMLLNDKKVYV-----------GHHIPRKERQAKIEESRARFT 226
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VYC N+D V E ++ F
Sbjct: 227 NVYCKNVDADVTDEEFEKLF 246
Score = 41.2 bits (95), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 25/131 (19%)
Query: 76 DNKQSAIDNFNNNRRRRNNFNQGRKRLSGRA-FRAQREDSVRRT---------------- 118
D Q+A+D +++ +F +G+K RA +++RE+ +RR+
Sbjct: 277 DEAQTAVDELHDS-----DF-KGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVN 330
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEF-ADEHGARAALNLG 176
+Y+ +I ++ +ERL F+ G + C++ P V R F FV + A E +A +
Sbjct: 331 LYLKNIPESYDDERLRDEFAPFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMN 390
Query: 177 GTMLGYYPVRV 187
G ML P+ V
Sbjct: 391 GKMLDNRPLYV 401
Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L +F+ G V RVC D L +A+V F + G RA
Sbjct: 47 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNFLNAADGERAMEQ 106
Query: 175 LGGTMLGYYPVRVLPSK 191
L +++ P R++ S+
Sbjct: 107 LNYSLIRNRPCRIMWSQ 123
>gi|291232664|ref|XP_002736265.1| PREDICTED: poly(A) binding protein, nuclear 1-like [Saccoglossus
kowalevskii]
Length = 231
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 11/89 (12%)
Query: 112 EDSVR---RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEF 163
ED V R+VYV ++D + T E L F CG V + C + G P FA++E+
Sbjct: 93 EDKVEVDARSVYVGNVDYSATAEELEAHFHGCGSVNRVTILCDKFTGHPKG---FAYIEY 149
Query: 164 ADEHGARAALNLGGTMLGYYPVRVLPSKT 192
AD+ + +L L ++ ++VLP +T
Sbjct: 150 ADKDSVQTSLALDESLFKGRQIKVLPKRT 178
>gi|147845244|emb|CAN83373.1| hypothetical protein VITISV_028295 [Vitis vinifera]
Length = 443
Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 12/136 (8%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D R ++V + + T E L F GQ+ DC V D ++ + FV F GA
Sbjct: 88 DVSHRKIFVHGLGWDTTRETLLAAFEPYGQIEDCNVVTDRNTGKAKGYGFVLFKTRQGAV 147
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEV 230
AL G + R+ S+ A + P+ P+S+D R +Y +N+ V +
Sbjct: 148 KALKQPGKKINN---RMTQSQLASM--GPSPPPQSQDT---VGRKIYVSNVQADVDPERL 199
Query: 231 KQFFEAACGGEVRTLP 246
+ FF A GE+ T P
Sbjct: 200 RSFF--AKFGEIETGP 213
>gi|356510359|ref|XP_003523906.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
[Glycine max]
Length = 409
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 66/150 (44%), Gaps = 36/150 (24%)
Query: 73 FADDNKQS-AIDNFNN-------------NRRRRNNFNQGRKRLSGRAFRAQRE-DSVRR 117
F DDN++S A+ N R+ + + QG + +Q E DS
Sbjct: 222 FGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKTSGYQQGSQS---NGTSSQSEADSTNT 278
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRV-----CGDPHSVLRFAFVEFADEHGARAA 172
T++V +D N+T E L FS G++V ++ CG FV+FA+ + A A
Sbjct: 279 TIFVGGLDPNVTAEDLKQPFSQYGEIVSVKIPVGKGCG---------FVQFANRNNAEEA 329
Query: 173 LN-LGGTMLGYYPVRVLPSKTAILPVNPTF 201
L L GT +G VR+ ++ P N F
Sbjct: 330 LQKLNGTTIGKQMVRLSWGRS---PANKQF 356
>gi|125811664|ref|XP_001361971.1| GA18301 [Drosophila pseudoobscura pseudoobscura]
gi|195171077|ref|XP_002026337.1| GL20391 [Drosophila persimilis]
gi|54637147|gb|EAL26550.1| GA18301 [Drosophila pseudoobscura pseudoobscura]
gi|194111239|gb|EDW33282.1| GL20391 [Drosophila persimilis]
Length = 296
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 15/121 (12%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-NLG 176
+Y+ +++++I + + FS G +++C V D R + FV F E ARAA+ +
Sbjct: 104 IYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEKVN 163
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS--RTVYCTNIDKKVPQAEVKQFF 234
G + V V+ F+PR + E+E + + +Y N+ ++ + +++ F
Sbjct: 164 GMLCNNQKVHVV-----------KFIPRRDREQEKATHFKNLYVKNLSEEFTEQHLREMF 212
Query: 235 E 235
E
Sbjct: 213 E 213
>gi|395329428|gb|EJF61815.1| hypothetical protein DICSQDRAFT_154995 [Dichomitus squalens
LYAD-421 SS1]
Length = 374
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVC-----GDPHSVLRFAFVEFAD-EHGAR 170
+ V+V ++ N+ E++L +F S GQVV R+ G P + F EFAD E A
Sbjct: 3 KVVFVGNVPYNMAEDQLIDVFKSVGQVVGLRLVFDRDTGKPKG---YGFCEFADHETAAS 59
Query: 171 AALNLGGTMLGYYPVRV 187
A NL G +G P+R+
Sbjct: 60 AVRNLNGYEIGGRPLRI 76
>gi|225557655|gb|EEH05941.1| polyadenylate-binding protein [Ajellomyces capsulatus G186AR]
gi|240278336|gb|EER41843.1| polyadenylate-binding protein [Ajellomyces capsulatus H143]
gi|325096361|gb|EGC49671.1| polyadenylate-binding protein [Ajellomyces capsulatus H88]
Length = 784
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 116 LNYTLIKGKPCRIMWSQ 132
>gi|212540254|ref|XP_002150282.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
gi|210067581|gb|EEA21673.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
Length = 748
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 51 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 110
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 111 LNYTLIKGRPCRIMWSQ 127
>gi|444316030|ref|XP_004178672.1| hypothetical protein TBLA_0B03120 [Tetrapisispora blattae CBS 6284]
gi|387511712|emb|CCH59153.1| hypothetical protein TBLA_0B03120 [Tetrapisispora blattae CBS 6284]
Length = 439
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 101 RLSGRAFRAQREDSV---RRTVYVSDIDQNI-TEERLAGLFSSCGQVVDCRVCGDPHSVL 156
+LS A + +R DS +R + V +ID + TEE L F CG++ + R+ +
Sbjct: 186 KLSNPAMKQERSDSAIKEKREILVRNIDNELATEEILKTYFLVCGEIQNIRIISPNNKSN 245
Query: 157 RFAFVEFADEHGARAALNLGGTML--GYYPVRV 187
FAF+ F + A A+ L + L G P+ +
Sbjct: 246 SFAFIIFLNAESAEKAIKLNNSYLKVGSNPISI 278
>gi|357628251|gb|EHJ77641.1| poly A binding protein [Danaus plexippus]
Length = 601
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 62/129 (48%), Gaps = 20/129 (15%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+ I + + FS+ G ++ C+V D +
Sbjct: 68 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKAIDNKAMYDTFSAFGNILSCKVAQDENG 127
Query: 155 VLR-FAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+ + FV F E A ++ + G +L V V F+PR E E+E+
Sbjct: 128 ASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV-----------GRFIPRKEREKELG 176
Query: 213 SRTVYCTNI 221
+ TN+
Sbjct: 177 EKAKLFTNV 185
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLHSDITEAMLFEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPSDAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ M+ P+R++ S+ R R+ V+ N+DK +
Sbjct: 63 MNFDMIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKAI 101
>gi|119113388|ref|XP_309558.3| AGAP011092-PA [Anopheles gambiae str. PEST]
gi|116131767|gb|EAA05186.3| AGAP011092-PA [Anopheles gambiae str. PEST]
Length = 634
Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 13/110 (11%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D+ +ITE L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLHSDITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALD- 61
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ + P++ P + +P+ R+ V+ N+DKK+
Sbjct: 62 ---TMNFDPIKGRPIRIMWSQRDPSL-------RKSGVGNVFIKNLDKKI 101
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 67/148 (45%), Gaps = 25/148 (16%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+ I + + FS+ G ++ C+V D
Sbjct: 68 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKKIDNKAMYDTFSAFGNILSCKVAQDEKG 127
Query: 155 VLR-FAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+ + FV F E A ++ + G +L V V F+ R E E+E+
Sbjct: 128 QSKGYGFVHFETEESANTSIEKVNGMLLNEKKVYV-----------GRFISRKEREKELG 176
Query: 213 SRT-----VYCTNIDKKVPQAEVKQFFE 235
+ VY N + + + ++ FE
Sbjct: 177 EKAKLFTNVYVKNFGEDLTEEALRDMFE 204
Score = 37.4 bits (85), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEF-ADEHGARAALNLGG 177
+YV ++D I +ERL F+ G + +V D F FV F A + +A + G
Sbjct: 288 LYVKNLDDTIDDERLRKEFAPYGTITSAKVMLDEGRSKGFGFVCFSAPDEATKAVTEMNG 347
Query: 178 TMLGYYPVRV 187
++G P+ V
Sbjct: 348 RIVGSKPLYV 357
>gi|299743563|ref|XP_001835851.2| RNA-binding protein Prp24 [Coprinopsis cinerea okayama7#130]
gi|298405712|gb|EAU85916.2| RNA-binding protein Prp24 [Coprinopsis cinerea okayama7#130]
Length = 1042
Score = 45.8 bits (107), Expect = 0.019, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 7/92 (7%)
Query: 87 NNRRRRNNFNQGRKRLSGRA-FR----AQREDSVRRTVYVSDIDQNITEERLAGLFSSCG 141
++++RR + ++ S RA F A + D TV+V+D+ + +TE+ L LF CG
Sbjct: 633 DSKKRRTDEDEPSGETSKRARFETNPPALKRDRENTTVFVADLPEQVTEDELKSLFKDCG 692
Query: 142 QVVDCRVCGDPHSVLRFAFVEFADEHGARAAL 173
+ + ++ P++V+ A VEF + AAL
Sbjct: 693 SIREVKITKLPNAVV--ALVEFFERDSVPAAL 722
Score = 40.4 bits (93), Expect = 0.86, Method: Composition-based stats.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 7/127 (5%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARA 171
D+ R VYV+ + + T+ L LF++ G+V D R+ + R +AFVE+ + AR
Sbjct: 800 DANEREVYVAGLSKFTTKADLEKLFATYGKVKDVRMATEQDGHARGYAFVEYEEPQDARR 859
Query: 172 ALNLGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
AL+ L + V P A + T L R+ + R SR++ N+ +
Sbjct: 860 ALDANNYELKKRRIAVTLADPRVRARHNKSETGLGRNAEIR---SRSIRVRNLPPNTQEG 916
Query: 229 EVKQFFE 235
++Q FE
Sbjct: 917 LLQQTFE 923
>gi|27807029|ref|NP_776994.1| polyadenylate-binding protein 2 [Bos taurus]
gi|46396285|sp|Q28165.3|PABP2_BOVIN RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2; AltName: Full=Nuclear
poly(A)-binding protein 1; AltName: Full=Poly(A)-binding
protein II; Short=PABII; AltName:
Full=Polyadenylate-binding nuclear protein 1
gi|1051125|emb|CAA62006.1| polyA binding protein II [Bos taurus]
gi|126920947|gb|AAI33559.1| Poly(A) binding protein, nuclear 1 [Bos taurus]
gi|296483592|tpg|DAA25707.1| TPA: polyadenylate-binding protein 2 [Bos taurus]
Length = 306
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 172 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKESVRT 228
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L L ++ ++V+P +T
Sbjct: 229 SLALDESLFRGRQIKVIPKRT 249
>gi|255086607|ref|XP_002509270.1| predicted protein [Micromonas sp. RCC299]
gi|226524548|gb|ACO70528.1| predicted protein [Micromonas sp. RCC299]
Length = 588
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL 173
SV V+V ++ N+T +LA LFS CG+V R+ H +F FVE A A+ AL
Sbjct: 156 SVSTQVHVGNLTHNVTTTQLAQLFSHCGEVRGARIA---HG-KQFGFVEMATPEQAKKAL 211
Query: 174 NLGGTMLGYYPVRV 187
L G L +RV
Sbjct: 212 GLNGMPLDGRVLRV 225
>gi|328713207|ref|XP_001947071.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 23/147 (15%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
L GR R +QR+ S+R++ V++ ++D++I + + FS+ G ++ C+V D
Sbjct: 68 LKGRPMRIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQDETG 127
Query: 155 VLR-FAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
+ + FV F E A ++ ML L K + F+ R + E+E+
Sbjct: 128 QSKGYGFVHFEMEQSATQSIEKVNGML-------LNGKKVFV---GRFVGRKDREKELGQ 177
Query: 214 RT-----VYCTNIDKKVPQAEVKQFFE 235
+ VY NID+ V E+ + FE
Sbjct: 178 KAKLYTNVYIKNIDENVNDKELFEMFE 204
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS+ G V+ RVC D L +A+V F + A AL+
Sbjct: 3 SLYVGDLHSDVTEAMLFEKFSTVGAVLSIRVCRDMITRRSLGYAYVNFQNMADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ +L P+R++ S+ R R+ V+ N+D+ +
Sbjct: 63 MNFDILKGRPMRIMWSQ------------RDPSLRKSGVGNVFIKNLDRSI 101
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD-EHGARAALNLGG 177
+YV ++D I +ERL FS G + +V D F FV F+ E +A ++ G
Sbjct: 289 LYVKNLDDTIDDERLRKEFSVFGTITSAKVMMDDGRSKGFGFVCFSSPEEATKAVTDMNG 348
Query: 178 TMLGYYPVRV 187
++G P+ V
Sbjct: 349 RIVGTKPLYV 358
>gi|313214618|emb|CBY40937.1| unnamed protein product [Oikopleura dioica]
gi|313226203|emb|CBY21346.1| unnamed protein product [Oikopleura dioica]
Length = 208
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVL--RFAFVEFADEH 167
++ D+ R++Y+ +D + T E L F CG + + D +S FA++EF ++
Sbjct: 81 EKVDADNRSIYIGQVDYSSTAEELEQHFHGCGALNRVTIICDKYSGQPKGFAYIEFTEKE 140
Query: 168 GARAALNLGGTMLGYYPVRVLPSKTAILPVNPT 200
AA+ L G+M ++V+P +T V+ T
Sbjct: 141 SVDAAIALDGSMFRDRQIKVMPKRTNKPGVSST 173
>gi|242802487|ref|XP_002483981.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
gi|218717326|gb|EED16747.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
Length = 751
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 51 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 110
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 111 LNYTLIKGRPCRIMWSQ 127
>gi|495594|gb|AAA70421.1| poly(A)-binding protein [Drosophila melanogaster]
Length = 632
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 20/140 (14%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+RR+ V++ ++D+ I + + FS+ G ++ C+V D + +
Sbjct: 74 RIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYG 133
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR---T 215
FV F E A +++ + G +L V V F+PR E E ++
Sbjct: 134 FVHFETEEAANTSIDKVNGMLLNGKKVYV-----------GKFIPRKEQELGEKAKLFTN 182
Query: 216 VYCTNIDKKVPQAEVKQFFE 235
VY N + ++K+FFE
Sbjct: 183 VYVKNFTEDFDDEKLKEFFE 202
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ Q++ E L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R V+ N+D+ + + F
Sbjct: 63 MNFDLVRNKPIRIMWSQ------------RDPSLRRSGVGNVFIKNLDRAIDNKAIYDTF 110
Query: 235 EA 236
A
Sbjct: 111 SA 112
>gi|414588969|tpg|DAA39540.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 281
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 71/157 (45%), Gaps = 27/157 (17%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ S R++ +++ ++D++I + L F + G ++ C++ DP R +
Sbjct: 107 RIMYSNRDPSSRKSGTGNIFIKNLDKSIDNKALYDTFCAFGNILSCKIATDPSGESRGYG 166
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS----R 214
FV+F + A++A++ L G ++ V V P R +D + S
Sbjct: 167 FVQFEKDESAQSAIDKLNGMLINDKKVFVGP------------FVRKQDRENVSSNIKFS 214
Query: 215 TVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIIL 251
VY N+ V E+K+ F G+ T+ +++
Sbjct: 215 NVYVKNLSDTVTDDELKEMF-----GKYGTITSAVVM 246
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 19/135 (14%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNL 175
++YV D+ +++ + +L +FS G VV RVC D +S L +A+V + ++ A AL L
Sbjct: 36 SLYVGDLHESVQDAQLFDVFSQVGGVVSVRVCRDINSRKSLGYAYVNYNNQGDAARALEL 95
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L + P+ P+ + R R+ + ++ N+DK + K ++
Sbjct: 96 ----LNFTPING-------KPIRIMYSNRDPSSRKSGTGNIFIKNLDKSIDN---KALYD 141
Query: 236 AACG-GEVRTLPCMI 249
C G + L C I
Sbjct: 142 TFCAFGNI--LSCKI 154
>gi|224093736|ref|XP_002309968.1| predicted protein [Populus trichocarpa]
gi|222852871|gb|EEE90418.1| predicted protein [Populus trichocarpa]
Length = 218
Score = 45.8 bits (107), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 103 SGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFV 161
S A +A +E++ R+V+V ++D T E + F SCG V + D + FA+V
Sbjct: 76 SAAANQANKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYV 135
Query: 162 EFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRS 205
EF + + AL L + L ++V P +T + P + PRS
Sbjct: 136 EFVEVEAVQEALALNESELHGRQLKVSPKRTNV-PGMKQYHPRS 178
>gi|242041385|ref|XP_002468087.1| hypothetical protein SORBIDRAFT_01g039310 [Sorghum bicolor]
gi|241921941|gb|EER95085.1| hypothetical protein SORBIDRAFT_01g039310 [Sorghum bicolor]
Length = 654
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 15/119 (12%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-L 175
+YV D+ +++ EE L FS G V RVC D + LR+ +V + A AL+ L
Sbjct: 44 LYVGDLHEDVAEEHLFDAFSKIGTVTSVRVCRDNATSRSLRYGYVNYFSRADAVMALDKL 103
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+++ P+RV+ S R D R ++ N++ V A +++ F
Sbjct: 104 NHSLVLDKPIRVMWSN------------RDPDARRSGVGNIFVKNLNNSVDNASLQELF 150
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ RR+ ++V +++ ++ L LFS G V+ C+V + R +
Sbjct: 114 RVMWSNRDPDARRSGVGNIFVKNLNNSVDNASLQELFSKFGDVLSCKVAKNEDGTSRGYG 173
Query: 160 FVEFADEHGARAAL-NLGGTML 180
FV+FA + A A+ NL G++
Sbjct: 174 FVQFASQESADEAIGNLNGSLF 195
>gi|115475838|ref|NP_001061515.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|35215045|dbj|BAC92404.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|35215184|dbj|BAC92537.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|113623484|dbj|BAF23429.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|215694402|dbj|BAG89395.1| unnamed protein product [Oryza sativa Japonica Group]
gi|258644698|dbj|BAI39945.1| putative poly(A)-binding protein [Oryza sativa Indica Group]
Length = 660
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNL 175
++YV D+D ++ + +L +FS G VV RVC D ++ L +A+V F+ A AL
Sbjct: 40 SLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRLSLGYAYVNFSSPADAARALE- 98
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
ML + P+ P + + R R+ + ++ N+DK +
Sbjct: 99 ---MLNFTPINGKPIRI-------MYSNRDPSSRKSGAANIFIKNLDKSI 138
Score = 37.0 bits (84), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 119 VYVSDIDQNITE-ERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEF-ADEHGARAALNL 175
+Y+ ++D +I + E+L +F+ G + C+V D + V + + FV F + E +RA + +
Sbjct: 323 LYLKNLDDSIDDDEKLKEIFADFGTITSCKVMRDLNGVSKGSGFVAFKSAEDASRALVAM 382
Query: 176 GGTMLGYYPVRV 187
G M+G P+ V
Sbjct: 383 NGKMIGSKPLYV 394
>gi|126717485|gb|AAI33469.1| PABPN1 protein [Bos taurus]
Length = 296
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 172 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKESVRT 228
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L L ++ ++V+P +T
Sbjct: 229 SLALDESLFRGRQIKVIPKRT 249
>gi|440299935|gb|ELP92460.1| splicing factor, arginine/serine-rich, putative [Entamoeba invadens
IP1]
Length = 334
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN 174
+R+TV V +I N+ E++L F CG + P V R F+EF E A AL
Sbjct: 133 LRKTVCVRNIG-NLDEQKLIQFFEKCGNIRLLESSA-PEVVARQVFIEFETEESALRALQ 190
Query: 175 LGGTMLGYYPVRVLPSKTAILPV 197
L G L VRV S I PV
Sbjct: 191 LDGANLAGRVVRVSVSNKTIRPV 213
>gi|385302465|gb|EIF46595.1| polyadenylate-binding protein 2 [Dekkera bruxellensis AWRI1499]
Length = 234
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Query: 101 RLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--- 157
+L+ + QRE RR+VYV +ID + T L + CG++ + + H R
Sbjct: 67 KLASHQPKNQREID-RRSVYVGNIDYSATTADLKKVLDDCGEINRITILYN-HYTGRSKG 124
Query: 158 FAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILP 196
FA+VEF D GA+AA+ L GT L Y + K +P
Sbjct: 125 FAYVEFNDVEGAKAAIELNGTEL-YSRALTIQQKRTNIP 162
>gi|363753804|ref|XP_003647118.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890754|gb|AET40301.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
Length = 580
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 14/137 (10%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+R+ +Y+ ++ I + L FS+ G ++ C+V D + V R F
Sbjct: 110 RIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDDNGVSRGFG 169
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV F +E AR A+ ML + + + + + R E+ ++ +Y
Sbjct: 170 FVHFENESDARDAIEAVNGML-------MNDQEVYVAWHVSKKDRQSKLEEVKAKFTNIY 222
Query: 218 CTNIDKKVPQAEVKQFF 234
NID + Q E +Q F
Sbjct: 223 VKNIDLETSQEEFEQLF 239
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAAL-N 174
++YV ++D +++E L +FS G V RVC D ++ L +A+V F D R A+
Sbjct: 39 SLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGRKAIEQ 98
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 99 LNYTLIKGKPCRIMWSQ 115
>gi|308475439|ref|XP_003099938.1| hypothetical protein CRE_24556 [Caenorhabditis remanei]
gi|308266205|gb|EFP10158.1| hypothetical protein CRE_24556 [Caenorhabditis remanei]
Length = 408
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 9/121 (7%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAAL- 173
RT++V ++D IT+E LA LF+ G V ++ D L FAFVEF+D + A AL
Sbjct: 38 RTLFVGNLDPAITDEFLATLFNQIGAVTKAKIIFDCFQGLNDPFAFVEFSDHNQASQALQ 97
Query: 174 NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQF 233
++ G L +RV A+ P P + E R V+ ++ ++ ++++
Sbjct: 98 SMNGRQLLEREMRV---NWAVEPNQPGDRNKPETSRHFH---VFVGDLSAEIDSTKLREA 151
Query: 234 F 234
F
Sbjct: 152 F 152
>gi|190405722|gb|EDV08989.1| poly(A) binding protein [Saccharomyces cerevisiae RM11-1a]
Length = 262
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 97 QGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HS 154
Q ++ + +Q ++ ++YV D++ +++E L +FS G V RVC D +
Sbjct: 18 QDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKT 77
Query: 155 VLRFAFVEFADEHGARAALNLGGTMLGYYPVR 186
L +A+V F D R A+ L Y P++
Sbjct: 78 SLGYAYVNFNDHEAGRKAIE----QLNYTPIK 105
>gi|4758876|ref|NP_004634.1| polyadenylate-binding protein 2 [Homo sapiens]
gi|343780920|ref|NP_001230477.1| polyadenylate-binding protein 2 [Sus scrofa]
gi|360039231|ref|NP_001123909.2| polyadenylate-binding protein 2 [Canis lupus familiaris]
gi|114652132|ref|XP_001162168.1| PREDICTED: polyadenylate-binding protein 2 isoform 1 [Pan
troglodytes]
gi|296214561|ref|XP_002753680.1| PREDICTED: polyadenylate-binding protein 2 isoform 2 [Callithrix
jacchus]
gi|395859297|ref|XP_003801976.1| PREDICTED: polyadenylate-binding protein 2 [Otolemur garnettii]
gi|402875708|ref|XP_003901638.1| PREDICTED: polyadenylate-binding protein 2 [Papio anubis]
gi|426376431|ref|XP_004055004.1| PREDICTED: polyadenylate-binding protein 2 [Gorilla gorilla
gorilla]
gi|46403176|sp|Q86U42.3|PABP2_HUMAN RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2; AltName: Full=Nuclear
poly(A)-binding protein 1; AltName: Full=Poly(A)-binding
protein II; Short=PABII; AltName:
Full=Polyadenylate-binding nuclear protein 1
gi|2895276|gb|AAC39596.1| poly(A) binding protein II [Homo sapiens]
gi|15012075|gb|AAH10939.1| Poly(A) binding protein, nuclear 1 [Homo sapiens]
gi|119586571|gb|EAW66167.1| poly(A) binding protein, nuclear 1, isoform CRA_a [Homo sapiens]
gi|119586572|gb|EAW66168.1| poly(A) binding protein, nuclear 1, isoform CRA_a [Homo sapiens]
gi|387539310|gb|AFJ70282.1| polyadenylate-binding protein 2 [Macaca mulatta]
Length = 306
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 172 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKESVRT 228
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L L ++ ++V+P +T
Sbjct: 229 SLALDESLFRGRQIKVIPKRT 249
>gi|356548313|ref|XP_003542547.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 495
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 99 RKRLSGRAFRAQREDSVRR----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
R+++ R F +R++ + + +YV +ID ++T++ L LFSSCG + +V D
Sbjct: 272 REQILHRQFEEKRKEQILKYQASNLYVKNIDDDVTDKELRDLFSSCGTITSVKVMRDDKG 331
Query: 155 VLR-FAFVEFAD-EHGARAALNLGGTMLGYYPVRV 187
+ + F FV F++ E +A ++ G P+ +
Sbjct: 332 ISKGFGFVCFSNPEEANKAVMSFNGCTFHRKPLYI 366
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 7/133 (5%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARA 171
D+ +Y+ ++D +ITE L FSS G+++ + D + + + FAFV + + A+
Sbjct: 187 DAKYTNLYIKNLDSDITEALLQEKFSSFGKIISLAISKDDNGLSKGFAFVNYENPDDAKK 246
Query: 172 ALN-LGGTMLG---YYPVRVLPSKTAILPVNPTF-LPRSEDEREMCSRTVYCTNIDKKVP 226
A+ + G G Y R ++ F R E + + +Y NID V
Sbjct: 247 AMEAMNGLQFGSKYLYVARAQKKAEREQILHRQFEEKRKEQILKYQASNLYVKNIDDDVT 306
Query: 227 QAEVKQFFEAACG 239
E++ F ++CG
Sbjct: 307 DKELRDLF-SSCG 318
>gi|345561329|gb|EGX44424.1| hypothetical protein AOL_s00193g6 [Arthrobotrys oligospora ATCC
24927]
Length = 744
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA
Sbjct: 52 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEE 111
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 112 LNYTLIKGRPCRIMWSQ 128
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + + +
Sbjct: 123 RIMWSQRDPALRKTGHGNVFIKNLDIAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYG 182
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSE-----DEREMCS 213
FV + A A+ ++ G +L V V +P+ E DE +
Sbjct: 183 FVHYETAEAATNAIKHVNGMLLNEKKVYVG-----------HHIPKKERQSKFDEMKANF 231
Query: 214 RTVYCTNIDKKVPQAEVKQFFE 235
VY NID +V E + FE
Sbjct: 232 TNVYVKNIDPEVSDDEFRTLFE 253
>gi|328772736|gb|EGF82774.1| hypothetical protein BATDEDRAFT_22908 [Batrachochytrium
dendrobatidis JAM81]
Length = 961
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALNL 175
+ +YVS++ +TE+ L LFS G++ RV P+ + AFVE+ E A+ A+ L
Sbjct: 782 KKLYVSNLSHTMTEDDLQELFSKFGEISALRVVRMPNGNSKGIAFVEYNQEDHAKEAMTL 841
Query: 176 GGTML 180
GTM+
Sbjct: 842 NGTMV 846
>gi|213623852|gb|AAI70311.1| LOC403372 protein [Xenopus laevis]
Length = 218
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGAR 170
+R+VYV ++D T + L FSSCG + + C + G P +A++EFA+ +
Sbjct: 92 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKG---YAYIEFAERNSVD 148
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPT 200
AA+ + T+ ++VLP +T + ++ T
Sbjct: 149 AAVAMDETVFRGRTIKVLPKRTNMPGISST 178
>gi|359495203|ref|XP_002263507.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein 3
[Vitis vinifera]
Length = 1093
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 24/133 (18%)
Query: 74 ADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFR-AQREDSVR---------------- 116
+ D+ +A+++ N FN + G+A R ++RE +R
Sbjct: 701 SSDSAAAAVEHLNGA-----TFNDDKVWYVGKAQRKSEREAELRAKFEQERKNKFEKFKG 755
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFADEHGARAALN- 174
+Y+ ++D ++ +E+L LFS G + C+V DP + + + FV F A ALN
Sbjct: 756 TNLYLKNLDDSVNDEKLKELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNV 815
Query: 175 LGGTMLGYYPVRV 187
+ G M+G P+ V
Sbjct: 816 MNGKMIGRKPLYV 828
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAAL-N 174
++YV D+D I E +L LF V+ RVC D + L +A+V FA A AL +
Sbjct: 474 SLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALEH 533
Query: 175 LGGTMLGYYPVRVL 188
L T L P+R++
Sbjct: 534 LNFTPLNGKPIRIM 547
>gi|315434255|ref|NP_001186793.1| BCL2L2-PABPN1 protein [Homo sapiens]
gi|332223067|ref|XP_003260692.1| PREDICTED: polyadenylate-binding protein 2-like isoform 1 [Nomascus
leucogenys]
gi|338717165|ref|XP_003363601.1| PREDICTED: polyadenylate-binding protein 2-like isoform 2 [Equus
caballus]
gi|397473278|ref|XP_003808142.1| PREDICTED: polyadenylate-binding protein 2 [Pan paniscus]
gi|403264162|ref|XP_003924360.1| PREDICTED: polyadenylate-binding protein 2 [Saimiri boliviensis
boliviensis]
gi|410961928|ref|XP_003987530.1| PREDICTED: polyadenylate-binding protein 2 isoform 3 [Felis catus]
gi|426232740|ref|XP_004010379.1| PREDICTED: polyadenylate-binding protein 2 [Ovis aries]
gi|410267786|gb|JAA21859.1| BCL2L2-PABPN1 readthrough [Pan troglodytes]
gi|417399112|gb|JAA46586.1| Putative splicing factor rnps1 sr protein superfamily [Desmodus
rotundus]
Length = 333
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 199 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKESVRT 255
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L L ++ ++V+P +T
Sbjct: 256 SLALDESLFRGRQIKVIPKRT 276
>gi|395324233|gb|EJF56678.1| RNA-binding protein Prp24 [Dichomitus squalens LYAD-421 SS1]
Length = 1028
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 108 RAQREDSVR--RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFA 164
R +R DS R VYV+ + + +T+E L LF + G V D R+ D + FAFVEF
Sbjct: 771 RKERTDSDADDREVYVAGLSKLVTKEDLENLFKTYGTVKDVRMILDDKGRSKGFAFVEFE 830
Query: 165 DEHGARAAL 173
E+ ARAAL
Sbjct: 831 TENDARAAL 839
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN 174
TV+V+++ +TE+ L LF CG + + ++ P+S++ A VEF D AAL
Sbjct: 618 TVFVAEMPAGVTEDELRTLFKDCGSIREIKITQLPNSLV--ATVEFMDRESVPAALT 672
Score = 37.0 bits (84), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 10/142 (7%)
Query: 95 FNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP-H 153
+ +KR+ G+ + + T+YV++ + ++ + LF G++ D R
Sbjct: 671 LTKDKKRIRGQEVAVHL--AWKSTLYVTNFPEKADDKFIRTLFGKYGEIFDVRWPSKKFK 728
Query: 154 SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
S RF +V+F A AL L GT L K ++ NP D +
Sbjct: 729 STRRFCYVQFTSPTAAEHALELNGTELEE------SHKMSVFISNPERRKERTDS-DADD 781
Query: 214 RTVYCTNIDKKVPQAEVKQFFE 235
R VY + K V + +++ F+
Sbjct: 782 REVYVAGLSKLVTKEDLENLFK 803
>gi|380800735|gb|AFE72243.1| polyadenylate-binding protein 2, partial [Macaca mulatta]
Length = 273
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 139 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKESVRT 195
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L L ++ ++V+P +T
Sbjct: 196 SLALDESLFRGRQIKVIPKRT 216
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|294926226|ref|XP_002779060.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239887927|gb|EER10855.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 242
Score = 45.4 bits (106), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAAL 173
RR++YV ++D E L F SCG + + D +S FA++EF DE + AL
Sbjct: 115 RRSIYVGNVDYGSAPEELQEHFKSCGSIQRITIMVDKYSGHPKGFAYIEFGDEAAVQNAL 174
Query: 174 NLGGTMLGYYPVRVLPSKT 192
L TM ++VL +T
Sbjct: 175 LLNDTMFRGRQLKVLQKRT 193
>gi|147899481|ref|NP_001084418.1| embryonic polyadenylate-binding protein 2-B [Xenopus laevis]
gi|82238228|sp|Q6TY21.1|EPA2B_XENLA RecName: Full=Embryonic polyadenylate-binding protein 2-B;
Short=Embryonic poly(A)-binding protein 2-B;
Short=XePABP2-B; Short=ePABP-2B; Short=ePABP2-B;
AltName: Full=Embryonic poly(A)-binding protein type
II-B
gi|38641399|gb|AAR26263.1| embryonic poly(A) binding protein 2 [Xenopus laevis]
Length = 218
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGAR 170
+R+VYV ++D T + L FSSCG + + C + G P +A++EFA+ +
Sbjct: 92 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKG---YAYIEFAERNSVD 148
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPT 200
AA+ + T+ ++VLP +T + ++ T
Sbjct: 149 AAVAMDETVFRGRTIKVLPKRTNMPGISST 178
>gi|410912492|ref|XP_003969723.1| PREDICTED: polyadenylate-binding protein 2-like [Takifugu rubripes]
Length = 262
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 8/96 (8%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFA 164
+R D+ R+VYV ++D T + L F+ CG V + C R G P FA++EF+
Sbjct: 75 ERIDADNRSVYVGNVDYGATADELEIHFNGCGPVNRVTILCDRFSGHPKG---FAYIEFS 131
Query: 165 DEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPT 200
D +A+ L T+ ++VLP +T + ++ T
Sbjct: 132 DRDSVNSAIGLHETLFRGRVLKVLPKRTNLPGISTT 167
>gi|159794905|pdb|2JWN|A Chain A, Solution Nmr Structure Of The Protease-Resistent Domain Of
Xenopus Laevis Epabp2
gi|159794906|pdb|2JWN|B Chain B, Solution Nmr Structure Of The Protease-Resistent Domain Of
Xenopus Laevis Epabp2
Length = 124
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 53/96 (55%), Gaps = 8/96 (8%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFA 164
++++ +R+VYV ++D T + L FSSCG + + C + G P +A++EFA
Sbjct: 30 EKKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKG---YAYIEFA 86
Query: 165 DEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPT 200
+ + AA+ + T+ ++VLP +T + ++ T
Sbjct: 87 ERNSVDAAVAMDETVFRGRTIKVLPKRTNMPGISST 122
>gi|165761289|pdb|3B4D|A Chain A, Crystal Structure Of Human Pabpn1 Rrm
gi|165761291|pdb|3B4M|A Chain A, Crystal Structure Of Human Pabpn1 Rrm
gi|165761292|pdb|3B4M|B Chain B, Crystal Structure Of Human Pabpn1 Rrm
gi|165761293|pdb|3B4M|C Chain C, Crystal Structure Of Human Pabpn1 Rrm
gi|165761294|pdb|3B4M|D Chain D, Crystal Structure Of Human Pabpn1 Rrm
Length = 96
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 6 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKESVRT 62
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L L ++ ++V+P +T
Sbjct: 63 SLALDESLFRGRQIKVIPKRT 83
>gi|417398942|gb|JAA46504.1| Putative splicing factor rnps1 sr protein superfamily [Desmodus
rotundus]
Length = 323
Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 199 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKESVRT 255
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L L ++ ++V+P +T
Sbjct: 256 SLALDESLFRGRQIKVIPKRT 276
>gi|426243462|ref|XP_004015574.1| PREDICTED: embryonic polyadenylate-binding protein 2 [Ovis aries]
Length = 272
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 53/96 (55%), Gaps = 8/96 (8%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFA 164
++ ++ R+VYV ++D T + L F+ CG++ + C + G P +A++EFA
Sbjct: 134 EKAEADHRSVYVGNVDYGGTAQELEAYFNHCGEIHRVTILCDKFSGHPKG---YAYIEFA 190
Query: 165 DEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPT 200
E A+AA+ L ++ ++VLP +T + ++ T
Sbjct: 191 TESSAQAAVELDKSIFRGRVIKVLPKRTNLPGISST 226
>gi|297707183|ref|XP_002830392.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Pongo
abelii]
Length = 614
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 16/122 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ +R++ +++ +++ +I + L FS+ G ++ C+V D H F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGF 142
Query: 161 VEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCT 219
V F A+ A+N + G +L V V F R E E E+ +R + T
Sbjct: 143 VHFETHEAAQQAINTMNGMLLNDRKVFV-----------GHFKSRREREAELGARALEFT 191
Query: 220 NI 221
NI
Sbjct: 192 NI 193
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D + L +A++ F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSK 191
+ ML P+R++ S+
Sbjct: 72 MNFEMLKGQPIRIMWSQ 88
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 105 RAFRAQREDSVRR----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R F ++D +RR +YV ++D +I +++L FS G + +V + F F
Sbjct: 278 RRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGF 337
Query: 161 VEFAD-EHGARAALNLGGTMLGYYPVRV 187
V F+ E +A + G ++G P+ V
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGTKPLYV 365
>gi|148698435|gb|EDL30382.1| mCG5546, isoform CRA_a [Mus musculus]
Length = 632
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 100 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 159
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 160 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 208
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 209 NVYIKNFGEEVDDGNLKELF 228
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 29 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 88
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 89 MNFDVMKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 127
Score = 37.0 bits (84), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 20/143 (13%)
Query: 105 RAFRAQREDSVRR----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R F +++ + R +Y+ ++D I +E+L FS G + +V + F F
Sbjct: 295 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLEDGRSKGFGF 354
Query: 161 VEFAD-EHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCT 219
V F+ E +A + G ++G P+ V L + ++ER+ Y
Sbjct: 355 VCFSSPEEATKAVTEMNGRIVGSKPLYVA-------------LAQRKEERKAHLTNQYMQ 401
Query: 220 NID--KKVPQAEVKQFFEAACGG 240
+ + +P + + F+ A GG
Sbjct: 402 RVAGMRALPASAILNQFQPAAGG 424
>gi|229595173|ref|XP_001019281.3| nucleolar phosphoprotein, putative [Tetrahymena thermophila]
gi|1262277|gb|AAA96781.1| nucleolar phosphoprotein [Tetrahymena thermophila]
gi|225566349|gb|EAR99036.3| nucleolar phosphoprotein, putative [Tetrahymena thermophila SB210]
Length = 476
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
EDS +T++V ++ +E L F+SCG+V D R+ F VEF + G
Sbjct: 352 EDS--KTIFVGNLSFRTDKETLKKFFASCGKVADARIAEADGKSRGFGHVEFEERSGVEN 409
Query: 172 ALNLGGTMLGYYPVRV 187
AL G + P++V
Sbjct: 410 ALKKVGEQIDGRPIKV 425
>gi|75334880|sp|Q9LEB4.1|RBP45_NICPL RecName: Full=Polyadenylate-binding protein RBP45;
Short=Poly(A)-binding protein RBP45; AltName:
Full=RNA-binding protein 45; Short=NplRBP45
gi|9663767|emb|CAC01237.1| RNA Binding Protein 45 [Nicotiana plumbaginifolia]
Length = 409
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 15/136 (11%)
Query: 111 REDSVRRTVYVSDIDQNIT----EERLAGLFSSC--GQVVDCRVCGDPHSVLRFAFVEFA 164
R+DS T++V D+ ++T +E ++SS +VV R+ G + FV+FA
Sbjct: 170 RDDSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKG---YGFVKFA 226
Query: 165 DE-HGARAALNLGGTMLGYYPVRVLPS---KTAILPVNPTFL-PR-SEDEREMCSRTVYC 218
DE RA + G + P+R+ P+ K P T+ P+ ++ E + + T++
Sbjct: 227 DESEQLRAMTEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQGESDPNNTTIFV 286
Query: 219 TNIDKKVPQAEVKQFF 234
+D V + ++Q F
Sbjct: 287 GGLDPTVAEEHLRQVF 302
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLG 176
T++V +D + EE L +FS G++V ++ R FV+F A AL +L
Sbjct: 283 TIFVGGLDPTVAEEHLRQVFSPYGELVHVKIVAG----KRCGFVQFGTRASAEQALSSLN 338
Query: 177 GTMLGYYPVRV 187
GT LG +R+
Sbjct: 339 GTQLGGQSIRL 349
>gi|28193136|emb|CAD62310.1| unnamed protein product [Homo sapiens]
Length = 298
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 174 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKESVRT 230
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L L ++ ++V+P +T
Sbjct: 231 SLALDESLFRGRQIKVIPKRT 251
>gi|357145576|ref|XP_003573691.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 663
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNL 175
++YV D+D ++ + +L +FS G VV RVC D ++ L +A+V F+ A A+
Sbjct: 43 SLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARAME- 101
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
ML + PV P+ + R R+ + ++ N+DK +
Sbjct: 102 ---MLNFTPVNG-------KPIRIMYSNRDPSSRKSGAANIFIKNLDKSI 141
Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 16/181 (8%)
Query: 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQS 80
K NN+ K T L +MF K P+ F +N DD +
Sbjct: 219 KFNNVYVKNLSESTTEDNLKEMFGKFGPITSVIV-VRADDGKSRCFGFVNFENPDDAAR- 276
Query: 81 AIDNFNNNRRRRNNFNQGR-KRLSGRAFRAQR--EDSVRRT--------VYVSDIDQNIT 129
A+++ N + GR ++ S R + + E S + T +Y+ ++D ++
Sbjct: 277 AVEDLNGKKLDDKELYVGRAQKKSEREMQLKEKFEKSNKETADKNQGTNLYLKNLDGSVD 336
Query: 130 E-ERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEF-ADEHGARAALNLGGTMLGYYPVR 186
+ E+L LF+ G + C+V D + V + + FV F + E +RA + + G M+G P+
Sbjct: 337 DDEKLKELFAEFGTITSCKVMRDSNGVNKGSGFVAFKSSEDASRALVAMNGKMVGSKPLY 396
Query: 187 V 187
V
Sbjct: 397 V 397
>gi|354488039|ref|XP_003506178.1| PREDICTED: polyadenylate-binding protein 2-like [Cricetulus
griseus]
Length = 333
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 199 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKESVRT 255
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L L ++ ++V+P +T
Sbjct: 256 SLALDESLFRGRQIKVIPKRT 276
>gi|213626875|gb|AAI70309.1| Embryonic poly(A) binding protein 2 [Xenopus laevis]
Length = 218
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGAR 170
+R+VYV ++D T + L FSSCG + + C + G P +A++EFA+ +
Sbjct: 92 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKG---YAYIEFAERNSVD 148
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPT 200
AA+ + T+ ++VLP +T + ++ T
Sbjct: 149 AAVAMDETVFRGRTIKVLPKRTNMPGISST 178
>gi|444728816|gb|ELW69258.1| Bcl-2-like protein 2 [Tupaia chinensis]
Length = 367
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 238 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKESVRT 294
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L L ++ ++V+P +T
Sbjct: 295 SLALDESLFRGRQIKVIPKRT 315
>gi|154345147|ref|XP_001568515.1| putative poly(A)-binding protein 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065852|emb|CAM43630.1| putative poly(A)-binding protein 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 579
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALNL 175
+++V +D ++ E+RL F G V RVC D L + +V F D A AL+
Sbjct: 9 SIWVGGLDPDLQEQRLYDYFVRIGPVTSVRVCVDSATQKSLGYGYVNFQDPADAEKALDQ 68
Query: 176 GGTMLGYYPVRV 187
GT LG +R+
Sbjct: 69 AGTKLGSRYLRI 80
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDGNLKELF 211
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVMKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
Score = 37.0 bits (84), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 60/143 (41%), Gaps = 20/143 (13%)
Query: 105 RAFRAQREDSVRR----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R F +++ + R +Y+ ++D I +E+L FS G + +V + F F
Sbjct: 278 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRREFSPFGSITSAKVMLEDGRSKGFGF 337
Query: 161 VEFAD-EHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCT 219
V F+ E +A + G ++G P+ V L + ++ER+ Y
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGSKPLYVA-------------LAQRKEERKAHLTNQYMQ 384
Query: 220 NID--KKVPQAEVKQFFEAACGG 240
+ + +P + + F+ A GG
Sbjct: 385 RVAGMRALPASAILNQFQPAAGG 407
>gi|195391714|ref|XP_002054505.1| GJ22770 [Drosophila virilis]
gi|194152591|gb|EDW68025.1| GJ22770 [Drosophila virilis]
Length = 401
Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALN-L 175
++V D+ I ++L F+ G++ DCRV DP ++ + FV F + A A+ +
Sbjct: 69 IFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAM 128
Query: 176 GGTMLGY------YPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNID 222
G LG + R P+ A + + P ++ + TVYC I+
Sbjct: 129 NGQWLGSRSIRTNWATRKPPATKADMNIKPLTFDEVYNQSSPTNCTVYCGGIN 181
>gi|340503205|gb|EGR29817.1| RNA binding motif protein 34, putative [Ichthyophthirius
multifiliis]
Length = 330
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALN 174
+T+++ ++ ITEE L F CG + + R+ DP H+ F ++ F D + AL
Sbjct: 160 KTIFIGNLPFQITEEALRNHFIDCGNIQNLRIIRDPYTHNGKGFGYIYFEDILSFKNALL 219
Query: 175 LGGTMLGYYPVRV---LPSKTAI 194
G++L +RV +P K I
Sbjct: 220 KNGSLLEKRSIRVKKAVPEKKLI 242
>gi|326492626|dbj|BAJ90169.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511122|dbj|BAJ87575.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 13/109 (11%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNLG 176
+YV D+D ++ + +L +FS G VV RVC D ++ L +A+V F+ A AL
Sbjct: 44 LYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARALE-- 101
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
ML + PV P + + R R+ + ++ N+DK +
Sbjct: 102 --MLNFTPVNGKPIRI-------MYSNRDPSSRKSGAANIFIKNLDKSI 141
Score = 36.6 bits (83), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 119 VYVSDIDQNITE-ERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEF-ADEHGARAALNL 175
+Y+ ++D ++ + E+L LF+ G + C+V D + V + + FV F + E RA + +
Sbjct: 326 LYLKNLDGSVDDDEKLKELFAEFGTITSCKVMRDSNGVNKGSGFVAFKSSEDATRALVAM 385
Query: 176 GGTMLGYYPVRV 187
G M+G P+ V
Sbjct: 386 NGKMVGSKPLYV 397
>gi|195574479|ref|XP_002105216.1| GD21365 [Drosophila simulans]
gi|194201143|gb|EDX14719.1| GD21365 [Drosophila simulans]
Length = 363
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALN-L 175
++V D+ I ++L F+ G++ DCRV DP ++ + FV F + A A+ +
Sbjct: 99 IFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAM 158
Query: 176 GGTMLGY------YPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNID 222
G LG + R P+ A + P ++ + TVYC I+
Sbjct: 159 NGQWLGSRSIRTNWATRKPPATKADMNAKPLTFDEVYNQSSPTNCTVYCGGIN 211
>gi|417409281|gb|JAA51155.1| Putative splicing factor rnps1 sr protein superfamily, partial
[Desmodus rotundus]
Length = 278
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 154 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKESVRT 210
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L L ++ ++V+P +T
Sbjct: 211 SLALDESLFRGRQIKVIPKRT 231
>gi|401625965|gb|EJS43937.1| pab1p [Saccharomyces arboricola H-6]
Length = 577
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 97 QGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HS 154
Q ++ + +Q ++ ++YV D++ ++E L +FS G V RVC D +
Sbjct: 18 QDDQKQAATGSESQSVENSSASLYVGDLEPTVSEAHLYDIFSPIGSVSSIRVCRDAITKT 77
Query: 155 VLRFAFVEFADEHGARAALNLGGTMLGYYPVR 186
L +A+V F D R A++ L Y P++
Sbjct: 78 SLGYAYVNFNDHEAGRKAID----QLNYTPIK 105
>gi|356552218|ref|XP_003544466.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 652
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 27/157 (17%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ S+R++ +++ ++D+ I + L FSS G ++ C++ D + + +
Sbjct: 105 RIMYSHRDPSLRKSGTANIFIKNLDKAIDHKALHDTFSSFGLILSCKIATDASGLSKGYG 164
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV+F E A+ A++ L G ++ V V FL R +D S+T
Sbjct: 165 FVQFDSEESAQNAIDKLNGMLINDKQVYV-----------GHFL-RKQDRENALSKTKFN 212
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIIL 251
VY N+ + E+ +FF GE T+ +I+
Sbjct: 213 NVYVKNLSESTTDEELMKFF-----GEYGTITSAVIM 244
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 13/125 (10%)
Query: 76 DNKQSAIDNFNNNRRRRNNFNQGR--------KRLSGRAFRAQREDSVRRT---VYVSDI 124
D+ A++ N + + G+ + L GR ++ +E + + +Y+ ++
Sbjct: 263 DDAAKAVEGLNGKKVDDKEWYVGKAQKKSEREQELKGRFEQSIKESADKYQGVNLYLKNL 322
Query: 125 DQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFA-DEHGARAALNLGGTMLGY 182
D I++E+L +F+ G + C+V DP + R + FV F+ E +RA + G M+
Sbjct: 323 DDTISDEKLKEMFAEYGTITSCKVMRDPTGIGRGSGFVAFSTPEEASRALGEMNGKMIAG 382
Query: 183 YPVRV 187
P+ V
Sbjct: 383 KPLYV 387
>gi|355563109|gb|EHH19671.1| Polyadenylate-binding protein 1-like protein [Macaca mulatta]
Length = 614
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 16/122 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ +R++ +++ +++ +I + L FS+ G ++ C+V D H F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGF 142
Query: 161 VEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCT 219
V F A+ A+N + G +L V V F R E E E+ +R + T
Sbjct: 143 VHFETHEAAQQAINTMNGMLLNDRKVFV-----------GHFKSRREREAELGARALEFT 191
Query: 220 NI 221
NI
Sbjct: 192 NI 193
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D + L +A++ F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSK 191
+ ML P+R++ S+
Sbjct: 72 MNFEMLKGQPIRIMWSQ 88
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 105 RAFRAQREDSVRR----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R F ++D +RR +YV ++D +I +++L FS G + +V + F F
Sbjct: 278 RRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGF 337
Query: 161 VEFAD-EHGARAALNLGGTMLGYYPVRV 187
V F+ E +A + G ++G P+ V
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGTKPLYV 365
>gi|147785105|emb|CAN75447.1| hypothetical protein VITISV_030926 [Vitis vinifera]
Length = 632
Score = 45.4 bits (106), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFADEHGARAALN-LG 176
+Y+ ++D ++ +E+L LFS G + C+V DP + + + FV F A ALN +
Sbjct: 324 LYLKNLDDSVNDEKLXELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMN 383
Query: 177 GTMLGYYPVRV 187
G M+G P+ V
Sbjct: 384 GKMIGRKPLYV 394
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAAL-N 174
++YV D+D I E +L LF V+ RVC D + L +A+V FA A AL +
Sbjct: 40 SLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALEH 99
Query: 175 LGGTMLGYYPVRVL 188
L T L P+R++
Sbjct: 100 LNFTPLNGKPIRIM 113
>gi|33504432|emb|CAD43730.1| putative poly(A)-binding protein [Mangifera indica]
Length = 130
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEF-ADEHGARAALNLG 176
+Y+ ++D +I +++L LFS G + C+V DP+ + R + FV F E +RA L +
Sbjct: 16 LYMKNLDDSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVAFTTPEEASRAILEMN 75
Query: 177 GTMLGYYPVRV 187
G M+ P+ V
Sbjct: 76 GKMVVSKPLFV 86
>gi|268533576|ref|XP_002631916.1| Hypothetical protein CBG07904 [Caenorhabditis briggsae]
Length = 411
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 9/61 (14%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVC----GDPHSVLRFAFVEFADEHGARAA 172
RT++V ++D IT+E LA LF+ G V +VC DP FAF+EF D + A A
Sbjct: 37 RTLFVGNLDPAITDEFLATLFNQIGAVTKAKVCFDGMNDP-----FAFIEFGDHNQAGQA 91
Query: 173 L 173
L
Sbjct: 92 L 92
>gi|241831489|ref|XP_002414860.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
gi|215509072|gb|EEC18525.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
Length = 686
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 17/123 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+R++ V++ ++D+ I + + FS+ G ++ CRV D + + +
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFSAFGNILSCRVATDEEAASKGYG 142
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYC 218
FV F E A A++ + G +L V V F+PR E E+ + +
Sbjct: 143 FVHFETEEAANKAISKVNGMLLNNKKVYV-----------GKFIPRKEREKMLGDKARCF 191
Query: 219 TNI 221
TN+
Sbjct: 192 TNV 194
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +TE L FS+ G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHPEVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ + P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDAIKNKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKTI 110
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|392558318|gb|EIW51507.1| RNA-binding protein Prp24 [Trametes versicolor FP-101664 SS1]
Length = 1049
Score = 45.4 bits (106), Expect = 0.026, Method: Composition-based stats.
Identities = 41/150 (27%), Positives = 69/150 (46%), Gaps = 14/150 (9%)
Query: 94 NFNQGRK---RLSGRAFRAQREDS--VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV 148
+ +GR+ +S R +R DS R +Y++ + + +T+E L LF + G V D R+
Sbjct: 774 DMEEGRRLSVYISNPERRKERTDSDANEREIYIAGLSKLVTKEDLETLFKTYGNVKDVRM 833
Query: 149 CGDPHSVLR-FAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVN--PTFLPRS 205
D + FAF+EF E ARAAL L + V + + + P N P +
Sbjct: 834 ILDDKGKSKGFAFIEFTTEPEARAALAANNHELKKRRMAVTLADSRVKPKNKAPGY---- 889
Query: 206 EDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
E+ +R+V N+ + ++Q E
Sbjct: 890 --REEVRNRSVRVKNLPPNTQEGLLQQALE 917
Score = 39.7 bits (91), Expect = 1.5, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 74 ADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERL 133
ADD D+ +++R R + + RE+S TV+V D+ + +E L
Sbjct: 602 ADDE-----DSAESSKRPRMALTEKHTEEQPAKLKRDRENS---TVFVGDLPAGVEDEEL 653
Query: 134 AGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL 173
LF CG + + ++ P+S++ A VEF + AAL
Sbjct: 654 RALFKDCGVIREVKITQLPNSLV--ATVEFLERDSVPAAL 691
>gi|145544136|ref|XP_001457753.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124425571|emb|CAK90356.1| unnamed protein product [Paramecium tetraurelia]
Length = 599
Score = 45.4 bits (106), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVC-----GDPHSVLRFAFVEFADEHG 168
S ++ ++VS++ NIT L F + G ++D R+ G P ++ +AF+ FAD
Sbjct: 29 SAKQKIHVSNLPLNITAHHLQQAFQTYGHIIDIRIIRKTPNGLPLNLSCYAFIAFADNES 88
Query: 169 ARAALNLGG 177
A A+ GG
Sbjct: 89 AEKAIKDGG 97
>gi|426391820|ref|XP_004062264.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Gorilla
gorilla gorilla]
Length = 614
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 16/122 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ +R++ +++ +++ +I + L FS+ G ++ C+V D H F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGF 142
Query: 161 VEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCT 219
V F A+ A+N + G +L V V F R E E E+ +R + T
Sbjct: 143 VHFETHEAAQQAINTMNGMLLNDRKVFV-----------GHFKSRREREAELGARALEFT 191
Query: 220 NI 221
NI
Sbjct: 192 NI 193
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D + L +A++ F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSK 191
+ ML P+R++ S+
Sbjct: 72 MNFEMLKGQPIRIMWSQ 88
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 105 RAFRAQREDSVRR----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R F ++D +RR +YV ++D +I +++L FS G + +V + F F
Sbjct: 278 RRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGF 337
Query: 161 VEFAD-EHGARAALNLGGTMLGYYPVRV 187
V F+ E +A + G ++G P+ V
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGTKPLYV 365
>gi|297841929|ref|XP_002888846.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
gi|297334687|gb|EFH65105.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
Length = 685
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 19/103 (18%)
Query: 104 GRA-FRAQREDSVRRT----------------VYVSDIDQNITEERLAGLFSSCGQVVDC 146
GRA +++RE+ +RR +Y+ ++D ++ +E+L +FS G V C
Sbjct: 311 GRAQKKSEREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSC 370
Query: 147 RVCGDPHSVLR-FAFVEFAD-EHGARAALNLGGTMLGYYPVRV 187
+V + + R F FV ++ E +RA + G M+G P+ V
Sbjct: 371 KVMMNSQGLSRGFGFVAYSSPEEASRALSEMNGKMIGRKPLYV 413
Score = 42.4 bits (98), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 12/120 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD-PHSVLRFAFVEFADEHGARAALNLG 176
++YV D+D ++ E +L LF+ V RVC D L +A+V FA+ A A++
Sbjct: 59 SLYVGDLDPSVDEPQLLDLFNQVAPVQTVRVCRDLTRRSLGYAYVNFANPEDASRAMD-- 116
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEA 236
L Y P+R P + + +P+ R V+ N+D + + + F A
Sbjct: 117 --SLNYAPIRDRPIRIMLSNRDPS-------TRLSGKGNVFIKNLDPSIDNKALYETFSA 167
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--- 157
R + R+ S R + V++ ++D +I + L FS+ G ++ C+V D +V R
Sbjct: 129 RIMLSNRDPSTRLSGKGNVFIKNLDPSIDNKALYETFSAFGTILSCKVAMD--AVGRSKG 186
Query: 158 FAFVEFADEHGARAALN-LGGTML 180
+ FV+F E A+AA++ L G +L
Sbjct: 187 YGFVQFEKEETAQAAIDKLNGMLL 210
>gi|114682135|ref|XP_514668.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 2
[Pan troglodytes]
gi|397511247|ref|XP_003825989.1| PREDICTED: polyadenylate-binding protein 1-like [Pan paniscus]
Length = 614
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 16/122 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ +R++ +++ +++ +I + L FS+ G ++ C+V D H F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGF 142
Query: 161 VEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCT 219
V F A+ A+N + G +L V V F R E E E+ +R + T
Sbjct: 143 VHFETHEAAQQAINTMNGMLLNDRKVFV-----------GHFKSRREREAELGARALEFT 191
Query: 220 NI 221
NI
Sbjct: 192 NI 193
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D + L +A++ F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSK 191
+ ML P+R++ S+
Sbjct: 72 MNFEMLKGQPIRIMWSQ 88
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 105 RAFRAQREDSVRR----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R F ++D +RR +YV ++D +I +++L FS G + +V + F F
Sbjct: 278 RRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGF 337
Query: 161 VEFAD-EHGARAALNLGGTMLGYYPVRV 187
V F+ E +A + G ++G P+ V
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGTKPLYV 365
>gi|402882426|ref|XP_003904744.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 614
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 16/122 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ +R++ +++ +++ +I + L FS+ G ++ C+V D H F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGF 142
Query: 161 VEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCT 219
V F A+ A+N + G +L V V F R E E E+ +R + T
Sbjct: 143 VHFETHEAAQQAINTMNGMLLNDRKVFV-----------GHFKSRREREAELGARALEFT 191
Query: 220 NI 221
NI
Sbjct: 192 NI 193
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D + L +A++ F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSK 191
+ ML P+R++ S+
Sbjct: 72 MNFEMLKGQPIRIMWSQ 88
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 105 RAFRAQREDSVRR----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R F ++D +RR +YV ++D +I +++L FS G + +V + F F
Sbjct: 278 RRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGF 337
Query: 161 VEFAD-EHGARAALNLGGTMLGYYPVRV 187
V F+ E +A + G ++G P+ V
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGTKPLYV 365
>gi|297297505|ref|XP_001107287.2| PREDICTED: polyadenylate-binding protein 2-like isoform 2 [Macaca
mulatta]
Length = 355
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 231 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKESVRT 287
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L L ++ ++V+P +T
Sbjct: 288 SLALDESLFRGRQIKVIPKRT 308
>gi|126010727|gb|AAI33552.1| PABPN1 protein [Bos taurus]
Length = 275
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 141 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKESVRT 197
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L L ++ ++V+P +T
Sbjct: 198 SLALDESLFRGRQIKVIPKRT 218
>gi|297694743|ref|XP_002824624.1| PREDICTED: polyadenylate-binding protein 2 isoform 1 [Pongo abelii]
Length = 296
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 172 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKESVRT 228
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L L ++ ++V+P +T
Sbjct: 229 SLALDESLFRGRQIKVIPKRT 249
>gi|403355446|gb|EJY77299.1| FHA domain containing protein [Oxytricha trifallax]
Length = 628
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVL--RFAFVEFADEHGARAALNL 175
T+YVS++ ++T++ L LF CG+++ R+ + + FAF+ ADE AR ALN
Sbjct: 382 TIYVSNLPFSVTDKDLQDLFGDCGKILSIRMPLNNQTKQGRGFAFITMADEKAARRALNY 441
Query: 176 GG 177
G
Sbjct: 442 DG 443
>gi|354548064|emb|CCE44800.1| hypothetical protein CPAR2_406030 [Candida parapsilosis]
Length = 173
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Query: 88 NRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCR 147
RRR F + + + R + + DS R+VYV ++D T E+L F G +
Sbjct: 8 ERRRTQKFPETDEERAERLAKQEEADS--RSVYVGNVDYKATPEQLEEFFRPVGVIDRVT 65
Query: 148 VCGDPHSVL--RFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAI 194
+ D +S L +A+VEF + A++L G +RV P +T I
Sbjct: 66 ILFDKYSGLPKGYAYVEFENIESVNKAVDLHGKEFRGREIRVSPKRTNI 114
>gi|185135971|ref|NP_001118228.1| polyadenylate-binding protein 1-like [Homo sapiens]
gi|74754038|sp|Q4VXU2.1|PAP1L_HUMAN RecName: Full=Polyadenylate-binding protein 1-like
gi|119596298|gb|EAW75892.1| hCG2019100, isoform CRA_f [Homo sapiens]
Length = 614
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 16/122 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ +R++ +++ +++ +I + L FS+ G ++ C+V D H F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGF 142
Query: 161 VEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCT 219
V F A+ A+N + G +L V V F R E E E+ +R + T
Sbjct: 143 VHFETHEAAQQAINTMNGMLLNDRKVFV-----------GHFKSRREREAELGARALEFT 191
Query: 220 NI 221
NI
Sbjct: 192 NI 193
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D + L +A++ F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSK 191
+ ML P+R++ S+
Sbjct: 72 MNFEMLKGQPIRIMWSQ 88
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 105 RAFRAQREDSVRR----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R F ++D +RR +YV ++D +I +++L FS G + +V + F F
Sbjct: 278 RRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGF 337
Query: 161 VEFAD-EHGARAALNLGGTMLGYYPVRV 187
V F+ E +A + G ++G P+ V
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGTKPLYV 365
>gi|297739370|emb|CBI29360.3| unnamed protein product [Vitis vinifera]
Length = 633
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFADEHGARAALN-LG 176
+Y+ ++D ++ +E+L LFS G + C+V DP + + + FV F A ALN +
Sbjct: 298 LYLKNLDDSVNDEKLKELFSEFGTITSCKVMLDPQGLSKGSGFVAFLTPEEATRALNVMN 357
Query: 177 GTMLGYYPVRV 187
G M+G P+ V
Sbjct: 358 GKMIGRKPLYV 368
Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAAL-N 174
++YV D+D I E +L LF V+ RVC D + L +A+V FA A AL +
Sbjct: 14 SLYVGDLDTAIGEGQLYDLFQQVAPVLSIRVCRDQARRASLGYAYVNFASPQDATNALEH 73
Query: 175 LGGTMLGYYPVRVL 188
L T L P+R++
Sbjct: 74 LNFTPLNGKPIRIM 87
>gi|195037090|ref|XP_001989998.1| GH19101 [Drosophila grimshawi]
gi|193894194|gb|EDV93060.1| GH19101 [Drosophila grimshawi]
Length = 476
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
++S +T+YV ++D ++EE L LF G V C++ +P + +AF+E+++ A
Sbjct: 2 DESQPKTLYVGNLDGTVSEELLVALFGKMGPVKSCKIIREPGND-PYAFIEYSNYQAAST 60
Query: 172 ALN 174
AL
Sbjct: 61 ALT 63
>gi|302565150|ref|NP_001181379.1| polyadenylate-binding protein 1-like [Macaca mulatta]
Length = 614
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 16/122 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ +R++ +++ +++ +I + L FS+ G ++ C+V D H F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGF 142
Query: 161 VEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCT 219
V F A+ A+N + G +L V V F R E E E+ +R + T
Sbjct: 143 VHFETHEAAQQAINTMNGMLLNDRKVFV-----------GHFKSRREREAELGARALEFT 191
Query: 220 NI 221
NI
Sbjct: 192 NI 193
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D + L +A++ F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSK 191
+ ML P+R++ S+
Sbjct: 72 MNFEMLKGQPIRIMWSQ 88
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 105 RAFRAQREDSVRR----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R F ++D +RR +YV ++D +I +++L FS G + +V + F F
Sbjct: 278 RRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGF 337
Query: 161 VEFAD-EHGARAALNLGGTMLGYYPVRV 187
V F+ E +A + G ++G P+ V
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGTKPLYV 365
>gi|291575265|gb|ADE10198.1| ePABP2 [Cynoglossus semilaevis]
Length = 260
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFA 164
+R D+ R++YV ++D T + L F++CG V + C R G P FA++EF+
Sbjct: 73 ERIDADNRSIYVGNVDYGATADELEIHFNACGPVNRVTILCDRFSGHPKG---FAYIEFS 129
Query: 165 DEHGARAALNLGGTMLGYYPVRVLPSKT 192
D ++A+ L T+ ++VLP +T
Sbjct: 130 DRDSVQSAIGLHETLFRGRVLKVLPKRT 157
>gi|307103841|gb|EFN52098.1| hypothetical protein CHLNCDRAFT_59028 [Chlorella variabilis]
Length = 634
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 97/226 (42%), Gaps = 36/226 (15%)
Query: 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADD--NKQ 79
N++L + + T +L ++F+++ P+A ++ +N N D +
Sbjct: 37 NSSLYVGDLDRDVTEAQLFEVFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSVLDPAAAE 96
Query: 80 SAIDNFNNNRRRRNNFNQGRKRLSGRAFR---AQREDSVRRT----VYVSDIDQNITEER 132
A+D N L GR R + R+ + R++ +++ ++D+++ +
Sbjct: 97 RALDQLNYTP------------LVGRPMRIMWSHRDPAFRKSGVGNIFIKNLDRSVDNKA 144
Query: 133 LAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPS 190
L FS+ G ++ C+V D + + FV F + AR A+ + G +L V V P
Sbjct: 145 LHDTFSAFGNILSCKVAQDLKGESKGYGFVHFEKDESARLAIEKVNGMLLEGKKVYVGP- 203
Query: 191 KTAILPVNPTFLPRSE--DEREMCSRTVYCTNIDKKVPQAEVKQFF 234
FL RSE + E+ V+ N+D+ V EVK F
Sbjct: 204 ----------FLRRSERSSDSEVKFTNVFVKNLDEAVSDDEVKAMF 239
Score = 42.7 bits (99), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 16/124 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEF---ADEHGARAA 172
++YV D+D+++TE +L +FS G V RVC D L +A+V + D A A
Sbjct: 39 SLYVGDLDRDVTEAQLFEVFSQIGPVASIRVCRDAVTRRSLGYAYVNYNSVLDPAAAERA 98
Query: 173 LNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
L+ L Y P+ P + +P F R+ ++ N+D+ V +
Sbjct: 99 LD----QLNYTPLVGRPMRIMWSHRDPAF-------RKSGVGNIFIKNLDRSVDNKALHD 147
Query: 233 FFEA 236
F A
Sbjct: 148 TFSA 151
>gi|255581746|ref|XP_002531675.1| poly-A binding protein, putative [Ricinus communis]
gi|223528706|gb|EEF30719.1| poly-A binding protein, putative [Ricinus communis]
Length = 218
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
Query: 103 SGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFV 161
S A +A +E++ R+V+V ++D T E + F SCG V + D + FA+V
Sbjct: 76 SAAANQANKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYV 135
Query: 162 EFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPR 204
EF + + AL L + L ++VLP +T + P + PR
Sbjct: 136 EFLEVEAIQEALLLNESELHGRQLKVLPKRTNV-PGMKQYRPR 177
>gi|346466155|gb|AEO32922.1| hypothetical protein [Amblyomma maculatum]
Length = 502
Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVL--RFAFVEFADEHGARAALNL 175
TV+V ++ + +E L F+ CG V R+ D + + F FV F + GA AL +
Sbjct: 338 TVFVGNLPHEVQDEELWTFFADCGDVTSVRLIRDKGTGMGKGFGFVTFKNRDGAALALEM 397
Query: 176 GGTMLGYYPVRV 187
G L PVRV
Sbjct: 398 AGRELCGRPVRV 409
>gi|403355024|gb|EJY77076.1| FHA domain containing protein [Oxytricha trifallax]
Length = 628
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVL--RFAFVEFADEHGARAALNL 175
T+YVS++ ++T++ L LF CG+++ R+ + + FAF+ ADE AR ALN
Sbjct: 382 TIYVSNLPFSVTDKDLQDLFGDCGKILSIRMPLNNQTKQGRGFAFITMADEKAARRALNY 441
Query: 176 GG 177
G
Sbjct: 442 DG 443
>gi|358009812|pdb|3UCG|A Chain A, Crystal Structure Of A Rna Binding Domain Of Hypothetical
Polyadenylate-Binding Protein (Pabpn1) From Homo Sapiens
At 1.95 A Resolution
Length = 89
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 7 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKESVRT 63
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L L ++ ++V+P +T
Sbjct: 64 SLALDESLFRGRQIKVIPKRT 84
>gi|146197780|dbj|BAF57609.1| polyadenylate-binding protein [Dugesia japonica]
Length = 216
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHG 168
++ E+ +T+Y+S + ++TEE L +F + G V C + + + A+VEF +E
Sbjct: 6 SKMENRNTKTIYISCLPNSVTEEDLLSIFENYGLCVSCELNSEECT----AYVEFDNETS 61
Query: 169 ARAALNLGGTMLGYYPVRVL 188
AR AL++ G +G ++++
Sbjct: 62 ARNALSMNGIEMGATRIQII 81
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 101 RLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
+++ + F + +DS ++V +I N+ E L G F G+++D +V DP + +
Sbjct: 95 QMNSKNFLGKTDDSTPTQIFVGNIGSNVDEAILEGGFEHLGKIIDTKVIRDPDGKPKGYG 154
Query: 160 FVEFADEHGARAALN 174
FV F+ E A+ A++
Sbjct: 155 FVTFSSEFEAKNAID 169
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|405963265|gb|EKC28854.1| Polyadenylate-binding protein 1 [Crassostrea gigas]
Length = 172
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 110 QREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD 165
QR+ S R++ V++ ++D++I + L FS+ G ++ C++ D H + FV F
Sbjct: 92 QRDPSPRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKIVCDEHGFRGYGFVHFEK 151
Query: 166 EHGARAALN-LGGTML 180
E A A+ + GTML
Sbjct: 152 EESATIAIERVNGTML 167
Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 13/121 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNL 175
++YV D+ ++TE+ L FS+ G V+ RVC + L +A+V+F A ALN
Sbjct: 16 SLYVGDLHPDVTEDMLYEKFSTAGPVLSIRVCRVLFTRRSLGYAYVDFKHLEDAETALN- 74
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
+ Y ++ P+ T+ R R+ V+ N+DK + + F
Sbjct: 75 ---TMNYDTIKG-------QPIRITWYQRDPSPRKSGVGNVFIKNLDKSIDNKALYDTFS 124
Query: 236 A 236
A
Sbjct: 125 A 125
>gi|383864354|ref|XP_003707644.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Megachile
rotundata]
Length = 507
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Query: 90 RRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV- 148
R R F +G L R E+ RTV+ + Q I L FSS G+V D R+
Sbjct: 121 RARPPFGKGVSPLGIRNDELTPEERDARTVFCMQLSQRIRARDLEDFFSSVGKVQDVRLI 180
Query: 149 -CGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRV 187
C A+VEF D AL L G L P+ V
Sbjct: 181 TCNKTRRFKGIAYVEFKDPESVTLALGLSGQKLLGVPIVV 220
>gi|147835778|emb|CAN72942.1| hypothetical protein VITISV_011270 [Vitis vinifera]
Length = 185
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 15/143 (10%)
Query: 97 QGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-- 154
QG A A V ++YV D++ N+ + +L LF+ G VV RVC D +
Sbjct: 10 QGPGPAPNSAAGAGGNQFVTTSLYVGDLELNVNDPQLYDLFNQMGAVVSVRVCRDLSTRR 69
Query: 155 VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
L + +V +++ A AL+ L T L P+R++ S +P+ R+ +
Sbjct: 70 SLGYGYVNYSNPQDAARALDVLNFTPLNGKPLRIMYSH-----CDPSI-------RKSGT 117
Query: 214 RTVYCTNIDKKVPQAEVKQFFEA 236
++ N+DK + + F A
Sbjct: 118 GNIFIKNLDKGIDHKALHDTFSA 140
>gi|224085260|ref|XP_002307526.1| predicted protein [Populus trichocarpa]
gi|222856975|gb|EEE94522.1| predicted protein [Populus trichocarpa]
Length = 649
Score = 45.1 bits (105), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 13/119 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALNL 175
++YV D++ N+ E +L LFS QVV RVC D + L +A+V F++ A A+ L
Sbjct: 34 SLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDASNAMEL 93
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L + P+ + + +P+ R+ V+ N+D + +++ F
Sbjct: 94 ----LNFTPLNGKAIRIMVSHRDPSM-------RKSGHANVFIKNLDTSIDNKALQETF 141
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 8/87 (9%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
L+G+A R + R+ S+R++ V++ ++D +I + L F+S G V+ C+V D +
Sbjct: 99 LNGKAIRIMVSHRDPSMRKSGHANVFIKNLDTSIDNKALQETFASFGSVLSCKVAVDNNG 158
Query: 155 VLR-FAFVEFADEHGARAALNLGGTML 180
+ + FV+F +E A++A+N ML
Sbjct: 159 QSKGYGFVQFENEEAAQSAINRLNGML 185
Score = 43.1 bits (100), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFADEHGARAALN-LG 176
+Y+ ++D I +E+L LFS G + C+V D + + + FV F+ A ALN +
Sbjct: 317 LYLKNLDDKIDDEKLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALNGMN 376
Query: 177 GTMLGYYPVRV 187
G M+G P+ V
Sbjct: 377 GKMIGKKPLYV 387
>gi|194043009|ref|XP_001928191.1| PREDICTED: probable RNA-binding protein 19 [Sus scrofa]
Length = 967
Score = 45.1 bits (105), Expect = 0.029, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 9/134 (6%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV-----LRFAFVEFADEHGARAA 172
T+++ +++ + TEE L G+FS G V C + + + F FVE+ A+ A
Sbjct: 738 TLFIKNLNFSTTEETLKGVFSKVGAVKSCSISKKKNKAGALLSMGFGFVEYKKPEQAQKA 797
Query: 173 L-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
L L G ++ + + V S+ A P PT + + R+ + + NI + E++
Sbjct: 798 LKQLQGHVVDGHKLEVRISERATKPA-PTATRKKQVARKQTTSKILVRNIPFQADSREIR 856
Query: 232 QFFEAACGGEVRTL 245
+ F GE++T+
Sbjct: 857 ELFSTF--GELKTV 868
>gi|201860272|ref|NP_001128480.1| polyadenylate-binding protein 2 [Rattus norvegicus]
gi|149063929|gb|EDM14199.1| poly(A) binding protein, nuclear 1, isoform CRA_a [Rattus
norvegicus]
Length = 302
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 168 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKESVRT 224
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L L ++ ++V+P +T
Sbjct: 225 SLALDESLFRGRQIKVIPKRT 245
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|221058210|ref|XP_002261613.1| RNA binding protein [Plasmodium knowlesi strain H]
gi|194247618|emb|CAQ41018.1| RNA binding protein, putative [Plasmodium knowlesi strain H]
Length = 584
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
D + +Y+ ++ N E+ + LF + G ++ + + AFVEF +E A+AA
Sbjct: 157 DVFSKIIYMENVPPNCREDDIKALFKNVGTTTSYKLHYNEQKKVNTAFVEFTNEEHAKAA 216
Query: 173 LNLGGTMLG 181
L+L GT +G
Sbjct: 217 LHLNGTKIG 225
Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL 173
S+ VYV ++ ++TE+ + F SC +++ P ++ +EF G A
Sbjct: 6 SIANVVYVKNLSTDVTEKDIKEKFESCDEIIGVVFKNFPGKNQKYCQIEFKSSEGITKAS 65
Query: 174 NLGGTMLGYYPVRVLPSKTAILPV--NPTF 201
L G +L P+ V T I P+ NP F
Sbjct: 66 RLNGELLLNVPMVV----TVIEPISHNPPF 91
>gi|47228418|emb|CAG05238.1| unnamed protein product [Tetraodon nigroviridis]
Length = 386
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 106 AFRAQREDSVRRTVYVSDID----QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFV 161
RA++ V + ++D Q T E+L F G V R+ GD RFAFV
Sbjct: 178 GIRAEQRPRVEGQLMEGELDSFCLQTTTAEQLLEFFRQVGSVKFVRMAGDETQPTRFAFV 237
Query: 162 EFADEHGARAALNLGGTMLGYYPVR 186
EF+++ AL G M G P++
Sbjct: 238 EFSEQDSVARALTFNGVMFGDRPLK 262
>gi|9506945|ref|NP_062275.1| polyadenylate-binding protein 2 [Mus musculus]
gi|46396417|sp|Q8CCS6.3|PABP2_MOUSE RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2; AltName: Full=Nuclear
poly(A)-binding protein 1; AltName: Full=Poly(A)-binding
protein II; Short=PABII; AltName:
Full=Polyadenylate-binding nuclear protein 1
gi|2351846|gb|AAC00210.1| poly(A) binding protein II [Mus musculus]
gi|33585929|gb|AAH55866.1| Poly(A) binding protein, nuclear 1 [Mus musculus]
gi|148704376|gb|EDL36323.1| poly(A) binding protein, nuclear 1, isoform CRA_b [Mus musculus]
Length = 302
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 168 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKESVRT 224
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L L ++ ++V+P +T
Sbjct: 225 SLALDESLFRGRQIKVIPKRT 245
>gi|156554641|ref|XP_001605226.1| PREDICTED: probable splicing factor, arginine/serine-rich 7-like
[Nasonia vitripennis]
Length = 501
Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCG-QVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
+ +RRT+ V ++D + T+++L F + +V R+C +A VEF+++
Sbjct: 162 EEIRRTLVVGNLDASTTDQQLIEFFGNHNVEVKYTRLCTRDSDTDHYALVEFSEQASIVP 221
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL L G ML P+++ S AI+
Sbjct: 222 ALQLNGQMLNDRPIKIGHSVQAIM 245
>gi|405118614|gb|AFR93388.1| hypothetical protein CNAG_03888 [Cryptococcus neoformans var.
grubii H99]
Length = 1120
Score = 45.1 bits (105), Expect = 0.030, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 102 LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVL--RFA 159
+S + + +R D+ T++V ++ TE + GLF+ G + ++ DP + FA
Sbjct: 822 ISDPSAKTKRSDAANSTLFVGGLNNKSTEVDIKGLFNEFGTISHIKLGWDPLKRICKGFA 881
Query: 160 FVEFADEHGARAALNLGGT 178
FVE + E A+AAL L GT
Sbjct: 882 FVEMSTEAEAKAALKLHGT 900
>gi|440908773|gb|ELR58758.1| Embryonic polyadenylate-binding protein 2, partial [Bos grunniens
mutus]
Length = 272
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 53/96 (55%), Gaps = 8/96 (8%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFA 164
++ ++ R++YV ++D T + L F+ CG++ + C + G P +A++EFA
Sbjct: 134 EKAEADHRSIYVGNVDYGGTAQELEAYFNHCGEIHRVTILCDKFSGHPKG---YAYIEFA 190
Query: 165 DEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPT 200
E A+AA+ L ++ ++VLP +T + ++ T
Sbjct: 191 TESSAQAAVELDKSIFRGRVIKVLPKRTNLPGISST 226
>gi|349577826|dbj|GAA22994.1| K7_Pab1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 577
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 97 QGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HS 154
Q ++ + +Q ++ ++YV D++ +++E L +FS G V RVC D +
Sbjct: 18 QDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKT 77
Query: 155 VLRFAFVEFADEHGARAALNLGGTMLGYYPVR 186
L +A+V F D R A+ L Y P++
Sbjct: 78 SLGYAYVNFNDHEAGRKAIE----QLNYTPIK 105
>gi|340381668|ref|XP_003389343.1| PREDICTED: squamous cell carcinoma antigen recognized by T-cells
3-like [Amphimedon queenslandica]
Length = 402
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 98 GRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVC---GDPHS 154
+K++ + E+ T++VS++ + E++L LFS CGQV D R+ G
Sbjct: 154 SKKKIDSKKLEVNEEN----TIFVSNLASDTDEDQLHKLFSQCGQVADVRLIKKFGGKFG 209
Query: 155 VLRFAFVEFADEHGARAALNLGGTMLGYYPVRV 187
+A+VEF AL L T+L + V
Sbjct: 210 TNVYAYVEFTTSEPTVEALKLDHTVLNSRAIYV 242
>gi|302754900|ref|XP_002960874.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
gi|302767436|ref|XP_002967138.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300165129|gb|EFJ31737.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300171813|gb|EFJ38413.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
Length = 619
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 13/113 (11%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAA 172
V ++YV D+D N++E +L LF+ GQV+ RVC D L +A+V + + A A
Sbjct: 2 VSTSLYVGDLDPNVSENQLYDLFNQIGQVLSIRVCRDLMTRRSLGYAYVNYNNVQDATRA 61
Query: 173 LNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
L L L + PV K V F R R+ + ++ N+D+ +
Sbjct: 62 LEL----LNFTPVN---GKA----VRIMFSHRDPSIRKSGTANIFIKNLDRAI 103
Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 107 FRAQREDSVRR----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FV 161
+ +R++ + R +Y+ ++D ++ +ERL +F+ G + C+V D + + FV
Sbjct: 269 YEQERKERIDRYQGANLYLKNLDDDVDDERLREIFADFGSITSCKVMRDAQGQSKGSGFV 328
Query: 162 EF-ADEHGARAALNLGGTMLGYYPVRV 187
+ A E RA + + G M+G P+ V
Sbjct: 329 AYSAPEEANRATIEMNGKMIGSKPIYV 355
>gi|58264106|ref|XP_569209.1| hypothetical protein CNB03760 [Cryptococcus neoformans var.
neoformans JEC21]
gi|134108024|ref|XP_777394.1| hypothetical protein CNBB1950 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260084|gb|EAL22747.1| hypothetical protein CNBB1950 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223859|gb|AAW41902.1| hypothetical protein CNB03760 [Cryptococcus neoformans var.
neoformans JEC21]
Length = 1121
Score = 45.1 bits (105), Expect = 0.031, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 102 LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVL--RFA 159
+S + + +R D+ T++V ++ TE + GLF+ G + ++ DP + FA
Sbjct: 823 ISDPSAKTKRSDAANSTLFVGGLNSKSTEVDIKGLFNEFGTISHIKLGWDPLKRICKGFA 882
Query: 160 FVEFADEHGARAALNLGGT 178
FVE + E A+AAL L GT
Sbjct: 883 FVEMSTEAEAKAALKLHGT 901
>gi|312374824|gb|EFR22303.1| hypothetical protein AND_15459 [Anopheles darlingi]
Length = 560
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
Query: 89 RRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV 148
RR R + R R G +ED RTV+ + Q I L FSS G+V D R+
Sbjct: 179 RRGRGGYGSYRDRTPGDEV--SQEDRDARTVFCMQLSQRIRARDLEEFFSSVGKVRDVRL 236
Query: 149 --CGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRV 187
C A++EF D AL L G L P+ V
Sbjct: 237 ITCNKTKRFKGIAYIEFKDPESVALALGLSGQRLLGIPISV 277
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|390465724|ref|XP_002750686.2| PREDICTED: polyadenylate-binding protein 4 [Callithrix jacchus]
Length = 656
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|119596297|gb|EAW75891.1| hCG2019100, isoform CRA_e [Homo sapiens]
Length = 617
Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 16/122 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ +R++ +++ +++ +I + L FS+ G ++ C+V D H F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGF 142
Query: 161 VEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCT 219
V F A+ A+N + G +L V V F R E E E+ +R + T
Sbjct: 143 VHFETHEAAQQAINTMNGMLLNDRKVFV-----------GHFKSRREREAELGARALEFT 191
Query: 220 NI 221
NI
Sbjct: 192 NI 193
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D + L +A++ F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSK 191
+ ML P+R++ S+
Sbjct: 72 MNFEMLKGQPIRIMWSQ 88
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 105 RAFRAQREDSVRR----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R F ++D +RR +YV ++D +I +++L FS G + +V + F F
Sbjct: 278 RRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGF 337
Query: 161 VEFAD-EHGARAALNLGGTMLGYYPVRV 187
V F+ E +A + G ++G P+ V
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGTKPLYV 365
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|326427875|gb|EGD73445.1| hypothetical protein PTSG_05149 [Salpingoeca sp. ATCC 50818]
Length = 242
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 111 REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGA 169
RE++ RR+V+V ++D +E L F CG V + P + FA+VEF DE
Sbjct: 115 REEADRRSVFVQNVDYGTSEVDLQLFFKDCGPVRRITIGRGPTGQPKGFAYVEFTDEAAV 174
Query: 170 RAALNLGGTMLGYYPVRVLPSKTAI 194
A L ML V VL +T +
Sbjct: 175 ETAKGLTNQMLKGRQVTVLNKRTNV 199
>gi|407843757|gb|EKG01614.1| hypothetical protein TCSYLVIO_007390 [Trypanosoma cruzi]
Length = 469
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
DS RT+Y+S + + ++ L L S CG V RVC FAFVE + ARA
Sbjct: 346 DSKSRTLYISHLPPLLPQQTLMELLSMCGVVNKVRVCRGSGYTTLFAFVEMSTAREARAT 405
Query: 173 LNLGGTMLGYYPVRVLPSKTAI 194
L L L +RV ++ +I
Sbjct: 406 LRLNRMNLLGCSIRVQIARNSI 427
>gi|255647938|gb|ACU24426.1| unknown [Glycine max]
Length = 218
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFA 164
A +A +E++ R+V+V ++D T E + F SCG V + D + FA+VEF
Sbjct: 82 ASQANKEEADARSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFV 141
Query: 165 DEHGARAALNLGGTMLGYYPVRVLPSKTAI 194
+ + AL L + L ++VLP +T +
Sbjct: 142 EAEAVQEALLLNESELHGRQLKVLPKRTNV 171
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDENLKELF 211
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDGNLKELF 211
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVMKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|340058242|emb|CCC52596.1| DRBD14 [Trypanosoma vivax Y486]
Length = 467
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 30/59 (50%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175
RT+YVS + + ++ +CG+V RVC FAFVE A GA AAL L
Sbjct: 349 RTLYVSHLPPTLPQQTFFDFLKACGEVTKVRVCRGKMYATLFAFVEMASVEGALAALRL 407
>gi|297824045|ref|XP_002879905.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297325744|gb|EFH56164.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 447
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 65/161 (40%), Gaps = 15/161 (9%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGA 169
EDSV R ++V + + E L F G++ DC+ D S + F+ F GA
Sbjct: 118 EDSVHRKIFVHGLGWDTKAETLIEAFKQYGEIEDCKCVVDKISGQSKGYGFILFKSRSGA 177
Query: 170 RAALNLGGTMLGYYPVRVLPSKTA-ILPVN--PTFLPRSEDEREMCSRTVYCTNIDKKVP 226
R AL +G R+ + A I PV P P E R +Y +N+ +
Sbjct: 178 RNALKQPQKKIG---TRMTACQLASIGPVQGTPVVAPAQHFNPENVQRKIYVSNVSADLD 234
Query: 227 QAEVKQFFEAACGGEVRTLPCMIILFY-----FHLFIYYFL 262
++ +FF GE+ P + F LF+Y L
Sbjct: 235 PQKLLEFFSRF--GEIEEGPLGLDKVTGRPKGFALFVYRSL 273
>gi|172092|gb|AAA34838.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
Length = 577
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 97 QGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HS 154
Q ++ + +Q ++ ++YV D++ +++E L +FS G V RVC D +
Sbjct: 18 QDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKT 77
Query: 155 VLRFAFVEFADEHGARAALNLGGTMLGYYPVR 186
L +A+V F D R A+ L Y P++
Sbjct: 78 SLGYAYVNFNDHEAGRKAIE----QLNYTPIK 105
>gi|6321013|ref|NP_011092.1| Pab1p [Saccharomyces cerevisiae S288c]
gi|417441|sp|P04147.4|PABP_YEAST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=ARS consensus-binding protein ACBP-67;
AltName: Full=Polyadenylate tail-binding protein
gi|171967|gb|AAA34787.1| poly (A)-binding protein [Saccharomyces cerevisiae]
gi|218386|dbj|BAA00017.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|603406|gb|AAB64692.1| Pab1p: polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|51013159|gb|AAT92873.1| YER165W [Saccharomyces cerevisiae]
gi|151944882|gb|EDN63141.1| poly(A) binding protein [Saccharomyces cerevisiae YJM789]
gi|207345803|gb|EDZ72507.1| YER165Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259146093|emb|CAY79353.1| Pab1p [Saccharomyces cerevisiae EC1118]
gi|285811799|tpg|DAA07827.1| TPA: Pab1p [Saccharomyces cerevisiae S288c]
gi|365765943|gb|EHN07446.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299869|gb|EIW10961.1| Pab1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 577
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 97 QGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HS 154
Q ++ + +Q ++ ++YV D++ +++E L +FS G V RVC D +
Sbjct: 18 QDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKT 77
Query: 155 VLRFAFVEFADEHGARAALNLGGTMLGYYPVR 186
L +A+V F D R A+ L Y P++
Sbjct: 78 SLGYAYVNFNDHEAGRKAIE----QLNYTPIK 105
>gi|148698436|gb|EDL30383.1| mCG5546, isoform CRA_b [Mus musculus]
Length = 580
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 100 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 159
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 160 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 208
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 209 NVYIKNFGEEVDDGNLKELF 228
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 29 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 88
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 89 MNFDVMKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 127
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 45.1 bits (105), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDGNLKELF 211
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVMKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|410899897|ref|XP_003963433.1| PREDICTED: embryonic polyadenylate-binding protein-like [Takifugu
rubripes]
Length = 606
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 19/128 (14%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ +R++ +++ ++D++I + L FS+ G ++ C+V D
Sbjct: 77 IKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDERG 136
Query: 155 VLRFAFVEFADEHGA-RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
+ FV F E A RA + G +L V V F R E E E+ S
Sbjct: 137 SKGYGFVHFETEEAANRAIETMNGMLLNDRKVFV-----------GHFKSRKEREEELGS 185
Query: 214 RTVYCTNI 221
+ + TNI
Sbjct: 186 KALKFTNI 193
Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 13/129 (10%)
Query: 72 NFAD-DNKQSAIDNFNNNRRRRNNFNQGR--KRLS-----GRAFRAQREDSVRR----TV 119
NFA ++ Q A+D N GR KRL R F ++D ++R +
Sbjct: 237 NFAHHEDAQKAVDEMNGKELNGKVIYVGRAQKRLERQGELKRKFELIKQDRIQRYQGVNL 296
Query: 120 YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD-EHGARAALNLGGT 178
YV ++D +I +ERL F+ G + +V D F FV F+ E +A + G
Sbjct: 297 YVKNLDDSIDDERLRKEFAPYGTITSAKVMTDGPQSRGFGFVCFSSPEEATKAVTEMNGR 356
Query: 179 MLGYYPVRV 187
++ P+ V
Sbjct: 357 IVATKPLYV 365
>gi|256271306|gb|EEU06376.1| Pab1p [Saccharomyces cerevisiae JAY291]
Length = 577
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 97 QGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HS 154
Q ++ + +Q ++ ++YV D++ +++E L +FS G V RVC D +
Sbjct: 18 QDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKT 77
Query: 155 VLRFAFVEFADEHGARAALNLGGTMLGYYPVR 186
L +A+V F D R A+ L Y P++
Sbjct: 78 SLGYAYVNFNDHEAGRKAIE----QLNYTPIK 105
>gi|91086169|ref|XP_970456.1| PREDICTED: similar to TIA-1 homolog [Tribolium castaneum]
gi|270010230|gb|EFA06678.1| hypothetical protein TcasGA2_TC009608 [Tribolium castaneum]
Length = 364
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
++S +T+YV ++D +++E+ L LFS G V C++ +P + +AFVEF + A
Sbjct: 3 DESHPKTLYVGNLDPSVSEDLLCTLFSQIGPVKGCKIIREPGND-PYAFVEFTNHQSAST 61
Query: 172 AL 173
AL
Sbjct: 62 AL 63
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 108 RAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFAD 165
+ +++ S ++V D+ I E L F+ G++ +CR+ DP ++ +AFV F
Sbjct: 87 QPKQDTSNHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVK 146
Query: 166 EHGARAALN-LGGTMLGYYPVRV 187
+ A A+ + G LG +R
Sbjct: 147 KAEAENAIQAMNGQWLGSRSIRT 169
>gi|148704375|gb|EDL36322.1| poly(A) binding protein, nuclear 1, isoform CRA_a [Mus musculus]
Length = 294
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 170 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKESVRT 226
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L L ++ ++V+P +T
Sbjct: 227 SLALDESLFRGRQIKVIPKRT 247
>gi|26328001|dbj|BAC27741.1| unnamed protein product [Mus musculus]
Length = 292
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 168 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKESVRT 224
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L L ++ ++V+P +T
Sbjct: 225 SLALDESLFRGRQIKVIPKRT 245
>gi|392574568|gb|EIW67704.1| hypothetical protein TREMEDRAFT_69686 [Tremella mesenterica DSM
1558]
Length = 1138
Score = 45.1 bits (105), Expect = 0.033, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 5/137 (3%)
Query: 102 LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVL--RFA 159
+S + +A+R D+ + T++V + T + LFS G V + D + FA
Sbjct: 829 ISDPSAKARRSDTSKTTLFVGGLTAKSTAPDVEKLFSQRGAVQHVNLGWDQAKQICKGFA 888
Query: 160 FVEFADEHGARAALNLGGTML-GYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYC 218
FVE A E A+ ALNL G+ + G Y + + T PR ER +RTV
Sbjct: 889 FVEMATEADAQEALNLHGSHINGRYLKVEMHDPNHVTKKRTTSAPREAIERR--ARTVRL 946
Query: 219 TNIDKKVPQAEVKQFFE 235
+N+ + ++Q E
Sbjct: 947 SNLPSDTQEGLLQQALE 963
>gi|195573327|ref|XP_002104645.1| GD18328 [Drosophila simulans]
gi|194200572|gb|EDX14148.1| GD18328 [Drosophila simulans]
Length = 824
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
++S +T+YV ++D +++E+ L LFS+ G V C++ +P + +AF+E+++ A
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGND-PYAFIEYSNYQAAST 60
Query: 172 ALN 174
AL
Sbjct: 61 ALT 63
Score = 40.4 bits (93), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALN-L 175
++V D+ I E L F+ G++ +CR+ DPH++ +AFV F + A A+ +
Sbjct: 97 IFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAM 156
Query: 176 GGTMLGYYPVRVLPSKTAILP 196
G +G +R S + P
Sbjct: 157 NGQWIGSRSIRTNWSTRKLPP 177
>gi|154339694|ref|XP_001565804.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063122|emb|CAM45321.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 493
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 112 EDSVR-RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVC-GDPHSVLRFAFVEFADEHGA 169
+D +R RT+Y+S + + + L L ++ G V R+C G +S L FAFVE GA
Sbjct: 373 QDQMRCRTIYISHLPGLLPQSMLLELLTAAGPVNKVRICTGAGYSTL-FAFVEMRTAEGA 431
Query: 170 RAALNLGGTMLGYYPVRVLPSKTAI 194
A+ + G L Y +RV ++ A+
Sbjct: 432 HRAMCMNGLQLMGYTIRVETARNAV 456
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 45.1 bits (105), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|325188438|emb|CCA22974.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 957
Score = 45.1 bits (105), Expect = 0.033, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 12/114 (10%)
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCG---QVVDCRVCGDPHSVLR--FAFVEFADEHGAR 170
R T++VS+ID+ +TE++L +FS Q V H + FA+V F DE +
Sbjct: 665 RHTLFVSNIDKEVTEDQLRSIFSDSAPNLQSVRLVAKKRAHGLKSRGFAYVSFLDEESCQ 724
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPTF-LPRSEDEREMCSRTVYCTNIDK 223
AL L G ++ PVR+ + + +F L SED RT+Y N+ +
Sbjct: 725 TALQLDGMVVKGKPVRI---HSYDVSTGTSFSLTHSEDS---AMRTLYIGNLQR 772
>gi|432095458|gb|ELK26654.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 657
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 79 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 138
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 139 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 187
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 188 NVYIKNFGEEVDDESLKELF 207
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|295671585|ref|XP_002796339.1| actin cytoskeleton protein (VIP1) [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226283319|gb|EEH38885.1| actin cytoskeleton protein (VIP1) [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 266
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV---CGDPHSVLRFAFVEFADEHGAR 170
S TV+VSDI TE+ + FS CG++ + G+P + A V F E A+
Sbjct: 2 SSHTTVHVSDISHKTTEKEVRDFFSFCGKITSLSISPSSGEP-DAPQSATVTFEKEAAAK 60
Query: 171 AALNLGGTMLGYYPVRV 187
AL L T LG V+V
Sbjct: 61 TALLLDNTQLGQSSVKV 77
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|366990603|ref|XP_003675069.1| hypothetical protein NCAS_0B06140 [Naumovozyma castellii CBS 4309]
gi|342300933|emb|CCC68698.1| hypothetical protein NCAS_0B06140 [Naumovozyma castellii CBS 4309]
Length = 443
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 96 NQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD-PHS 154
NQ + A + RE S R +YV ++D++I E+ L F GQ+ D ++ D ++
Sbjct: 63 NQESSVVPASATQGGRETS-DRVLYVGNLDKSINEDLLKQYFQVGGQITDVKIMVDKKNN 121
Query: 155 VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRV 187
+ +AF+E+ H A AL L G + VR+
Sbjct: 122 NVNYAFIEYLKSHDANVALQTLNGIQIEGKTVRI 155
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|320166417|gb|EFW43316.1| hypothetical protein CAOG_01360 [Capsaspora owczarzaki ATCC 30864]
Length = 986
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 74 ADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERL 133
A+DN +A+ + +R+R++ + R + A TV+VS++D TEE +
Sbjct: 645 AEDNGLTALLSDARVKRQRDSDDAQAPRFTLPEKHAHDVSKDPVTVFVSNLDFKATEEMI 704
Query: 134 AGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALNLGGTMLGYYPVRVLPS 190
F G +VD R+ P R + FVEF+ A+ AL L + P+ V PS
Sbjct: 705 RSQFEQIGNIVDVRLVRKPTGRSRGYGFVEFSSPEAAQKALALDRQPVLNRPMYVSPS 762
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 45.1 bits (105), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|19113513|ref|NP_596721.1| RNA-binding protein Prp24 (predicted) [Schizosaccharomyces pombe
972h-]
gi|74698432|sp|Q9USY2.1|YOW4_SCHPO RecName: Full=Uncharacterized RNA-binding protein C1861.04c
gi|5734577|emb|CAB52740.1| RNA-binding protein Prp24 (predicted) [Schizosaccharomyces pombe]
Length = 1014
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 58/122 (47%), Gaps = 10/122 (8%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV-LRFAFVEFADEHGARAAL 173
V +YV++ E + LFS+ G VVD R ++ RF +V+ A AL
Sbjct: 664 VDTNLYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQMRKPDEAHNAL 723
Query: 174 NLGGTMLG-YYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
L +L YP++V S P+ T PRS E R +Y TNID KV + +V+
Sbjct: 724 QLHKKLLEEKYPIQVFISD----PLRRT--PRSGAVYE--GRELYVTNIDFKVNEKDVET 775
Query: 233 FF 234
FF
Sbjct: 776 FF 777
Score = 37.0 bits (84), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 20/140 (14%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLG 176
R +YV++ID + E+ + F GQV R+ + F +V A AL+
Sbjct: 757 RELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSAA 816
Query: 177 GTMLGYYPVRVLPS-------KTAILPVNPTFLPRSEDERE-------------MCSRTV 216
G LG + V+ S KT + + L +S + E + S+++
Sbjct: 817 GKQLGNRVLNVVLSKPRESLEKTRVSSNDNRTLAKSFETTESNKMSTPKKSFEQIKSKSL 876
Query: 217 YCTNIDKKVPQAEVKQFFEA 236
TN+D V +A ++ FE+
Sbjct: 877 GVTNVDGTVNEARLRSLFES 896
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|357134255|ref|XP_003568733.1| PREDICTED: uncharacterized protein LOC100843156 [Brachypodium
distachyon]
Length = 786
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 111 REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGAR 170
+ +++++ V +S++ +T E L LF CG+VVDC + + A+VE++ A
Sbjct: 347 KAEALKKMVQISNLSLLLTVEHLKQLFGYCGKVVDCTIT----ETKQTAYVEYSKPEEAT 402
Query: 171 AALNL-----GGTMLGYYPVRVLPSKT 192
AAL L GG L + LP KT
Sbjct: 403 AALALNNMDVGGRPLNVEMAKTLPPKT 429
>gi|398404546|ref|XP_003853739.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
gi|339473622|gb|EGP88715.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
Length = 763
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEF-ADEHGARAALNL 175
+YV ++D ++TE L LFSS GQV RVC D L +A+V + G RA L
Sbjct: 55 LYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNVAGDGERALEEL 114
Query: 176 GGTMLGYYPVRVLPSK 191
T++ P R++ S+
Sbjct: 115 NYTLIKGRPCRIMWSQ 130
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 18/140 (12%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ +R+T V++ ++D I + L F++ G ++ C+V D ++ + +
Sbjct: 125 RIMWSQRDPLLRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDENANSKGYG 184
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRV---LPSKTAILPVNPTFLPRSEDEREMCSRT 215
FV + A A+ N+ G +L V V +P K + V +E +
Sbjct: 185 FVHYETAEAANQAIKNVNGMLLNEKKVFVGHHIPKKDRMSKV---------EEMKANFTN 235
Query: 216 VYCTNIDKKVPQAEVKQFFE 235
+Y NID + E ++ FE
Sbjct: 236 IYVKNIDSETTDNEFRELFE 255
>gi|290999559|ref|XP_002682347.1| predicted protein [Naegleria gruberi]
gi|284095974|gb|EFC49603.1| predicted protein [Naegleria gruberi]
Length = 204
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD----PHSVLRFAFVEFADEHGARAAL 173
T++V ++DQ + EE L LF G VVD ++ D HS +AFVEF EH A A+
Sbjct: 7 TIFVGNLDQQVDEELLWELFVQMGPVVDAKIPRDRITNTHS--GYAFVEFKHEHDANYAI 64
Query: 174 NL 175
+
Sbjct: 65 QV 66
>gi|7239504|gb|AAF43230.1|AC012654_14 Identical to the polyadenylate-binding protein 5 (PAB5) from
Arabidopsis thaliana gb|M97657 [Arabidopsis thaliana]
Length = 668
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 12/109 (11%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD-PHSVLRFAFVEFADEHGARAALNLG 176
++YV D+D ++ E L LF+ V + RVC D H L +A+V FA+ A A+
Sbjct: 46 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAME-- 103
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
L Y P+R P + + +P+ R V+ N+D +
Sbjct: 104 --SLNYAPIRDRPIRIMLSNRDPS-------TRLSGKGNVFIKNLDASI 143
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 19/103 (18%)
Query: 104 GRA-FRAQREDSVRRT----------------VYVSDIDQNITEERLAGLFSSCGQVVDC 146
GRA ++ RE+ +RR +Y+ ++D ++ +E+L +FS G V C
Sbjct: 298 GRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSC 357
Query: 147 RVCGDPHSVLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRV 187
+V + + R F FV +++ A A+ + G M+G P+ V
Sbjct: 358 KVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYV 400
Score = 37.7 bits (86), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 26/143 (18%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--- 157
R + R+ S R + V++ ++D +I + L FSS G ++ C+V D V R
Sbjct: 116 RIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMD--VVGRSKG 173
Query: 158 FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT- 215
+ FV+F E A+AA++ L G +L V V F+ R + R
Sbjct: 174 YGFVQFEKEETAQAAIDKLNGMLLNDKQVFV-----------GHFVRRQDRARSESGAVP 222
Query: 216 ----VYCTNIDKKVPQAEVKQFF 234
VY N+ K++ E+K+ F
Sbjct: 223 SFTNVYVKNLPKEITDDELKKTF 245
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|432102762|gb|ELK30241.1| Polyadenylate-binding protein 1-like protein [Myotis davidii]
Length = 603
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 16/133 (12%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ +R++ +++ +++++I + L FS+ G ++ C+V D H F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEESIDNKALYDTFSTFGNILSCKVVCDDHGSRGFGF 142
Query: 161 VEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCT 219
V F A+ A++ + G +L V V F R E E E+ R + T
Sbjct: 143 VHFETREAAQQAISTMNGMLLNNRKVFV-----------SHFKSRQEREAELGVRAMEFT 191
Query: 220 NIDKKVPQAEVKQ 232
N+ K Q ++ +
Sbjct: 192 NVYVKNLQMDIDE 204
>gi|355784464|gb|EHH65315.1| Polyadenylate-binding protein 1-like protein [Macaca fascicularis]
Length = 635
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 16/122 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ +R++ +++ +++ +I + L FS+ G ++ C+V D H F F
Sbjct: 95 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGF 154
Query: 161 VEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCT 219
V F A+ A+N + G +L V V F R E E E+ +R + T
Sbjct: 155 VHFETHEAAQQAINTMNGMLLNDRKVFV-----------GHFKSRREREAELGARALEFT 203
Query: 220 NI 221
NI
Sbjct: 204 NI 205
>gi|323355343|gb|EGA87168.1| Pab1p [Saccharomyces cerevisiae VL3]
Length = 563
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 97 QGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HS 154
Q ++ + +Q ++ ++YV D++ +++E L +FS G V RVC D +
Sbjct: 18 QDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKT 77
Query: 155 VLRFAFVEFADEHGARAALNLGGTMLGYYPVR 186
L +A+V F D R A+ L Y P++
Sbjct: 78 SLGYAYVNFNDHEAGRKAIE----QLNYTPIK 105
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|389608229|dbj|BAM17726.1| polyA-binding protein [Papilio xuthus]
Length = 619
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 61/129 (47%), Gaps = 20/129 (15%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+ I + + F++ G ++ C+V D
Sbjct: 77 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFTAFGNILSCKVAQDETG 136
Query: 155 VLR-FAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+ + FV F E A ++ + G +L V V F+PR E E+E+
Sbjct: 137 ASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYV-----------GRFIPRKEREKELG 185
Query: 213 SRTVYCTNI 221
+ TN+
Sbjct: 186 EKAKLFTNV 194
Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAAL-N 174
++YV D+ +ITE L FS+ G V+ RVC D L +A+V F A AL
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALEG 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDIIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKTI 110
>gi|384245524|gb|EIE19017.1| hypothetical protein COCSUDRAFT_67932 [Coccomyxa subellipsoidea
C-169]
Length = 596
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALNL 175
R+V+V + E +A FS CG+V++ + D + R FA VEF++E A AL L
Sbjct: 437 RSVHVQGVSPLAVPEVIAAHFSGCGRVINVTIGRDMQGMSRGFAHVEFSNELEAHNALLL 496
Query: 176 GGTMLGYYPVRVLP 189
G++L P+ V P
Sbjct: 497 SGSILLQQPITVTP 510
>gi|296478138|tpg|DAA20253.1| TPA: ePABP2-like [Bos taurus]
Length = 272
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 53/96 (55%), Gaps = 8/96 (8%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFA 164
++ ++ R++YV ++D T + L F+ CG++ + C + G P +A++EFA
Sbjct: 134 EKAEADHRSIYVGNVDYGGTAQELEAYFNHCGEIHRVTILCDKFSGHPKG---YAYIEFA 190
Query: 165 DEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPT 200
E A+AA+ L ++ ++VLP +T + ++ T
Sbjct: 191 TESSAQAAVELDKSIFRGRVIKVLPKRTNLPGISST 226
>gi|224085256|ref|XP_002307525.1| predicted protein [Populus trichocarpa]
gi|222856974|gb|EEE94521.1| predicted protein [Populus trichocarpa]
Length = 614
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 13/119 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALNL 175
++YV D++ N+ E +L LFS QVV RVC D + L +A+V F++ A A+ L
Sbjct: 24 SLYVGDLEHNVNEGQLFDLFSQVAQVVSIRVCRDQARRASLGYAYVNFSNPQDAANAMEL 83
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L + P+ + + +P+ R+ V+ N+D + +++ F
Sbjct: 84 ----LNFTPLNGKAIRIMVSHRDPSM-------RKSGHANVFIKNLDTSIDNKALQETF 131
Score = 43.9 bits (102), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 8/87 (9%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
L+G+A R + R+ S+R++ V++ ++D +I + L F+S G V+ C+V D +
Sbjct: 89 LNGKAIRIMVSHRDPSMRKSGHANVFIKNLDTSIDNKALQETFASFGPVLSCKVAVDNNG 148
Query: 155 VLR-FAFVEFADEHGARAALNLGGTML 180
+ + FV+F +E A++A+N ML
Sbjct: 149 QSKGYGFVQFENEEAAQSAINRLNGML 175
Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFADEHGARAALN-LG 176
+Y+ ++D I +E+L LFS G + C+V D + + + FV F+ A ALN +
Sbjct: 307 LYLKNLDDKIDDEKLKELFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRALNGMN 366
Query: 177 GTMLGYYPVRV 187
G M+G P+ V
Sbjct: 367 GKMIGKKPLYV 377
>gi|146083801|ref|XP_001464839.1| putative RNA-binding protein [Leishmania infantum JPCM5]
gi|134068934|emb|CAM67075.1| putative RNA-binding protein [Leishmania infantum JPCM5]
Length = 409
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADE 166
R Y+ +ID+++T + L +F CG ++DC + G RF F++FA E
Sbjct: 8 TRFGCYIGNIDRSVTIDMLKQVFCQCGTIIDCSLNGREGDPYRFGFIDFATE 59
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|118371394|ref|XP_001018896.1| polyadenylate-binding protein 2 [Tetrahymena thermophila]
gi|89300663|gb|EAR98651.1| polyadenylate-binding protein 2 [Tetrahymena thermophila SB210]
Length = 180
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHG 168
Q+++ +R+++V +++ N T+E L +F CG++ + + FA+++F D+
Sbjct: 52 QQKEEDKRSIFVQNVEYNTTKEELMDIFKDCGEIEKITIPQTRQGQGKGFAYIQFVDKSS 111
Query: 169 ARAALNLGGTMLGYYPVRVLPSKT 192
A L ++ ++VLP +T
Sbjct: 112 VELAKALSDSIHRGRAIKVLPKRT 135
>gi|52346030|ref|NP_001005062.1| embryonic polyadenylate-binding protein [Xenopus (Silurana)
tropicalis]
gi|82235830|sp|Q6DEY7.1|EPAB_XENTR RecName: Full=Embryonic polyadenylate-binding protein;
Short=Embryonic poly(A)-binding protein; Short=ePABP
gi|49899948|gb|AAH76956.1| MGC89376 protein [Xenopus (Silurana) tropicalis]
Length = 629
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ +R++ V++ ++D++I + L FS+ G ++ C+V D H
Sbjct: 77 IKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG 136
Query: 155 VLRFAFVEFADEHGA-RAALNLGGTML 180
+ FV F + A RA + G +L
Sbjct: 137 SRGYGFVHFETQEAANRAIQTMNGMLL 163
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D L +A++ F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSK 191
+ ++ P+R++ S+
Sbjct: 72 MNFEVIKGRPIRIMWSQ 88
>gi|389600963|ref|XP_003722977.1| putative RNA-binding protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322504591|emb|CBZ14490.1| putative RNA-binding protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 404
Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHG-ARAAL 173
R Y+ +ID+++T + L +F CG ++DC + G RF F++FA E ARA
Sbjct: 8 TRFGCYIGNIDRSVTIDMLRQVFCQCGTIIDCSLNGREGDPYRFGFIDFATEDDRARAMK 67
Query: 174 NLGGTMLG 181
G T++G
Sbjct: 68 YNGFTLVG 75
>gi|166786|gb|AAA32832.1| poly(A)-binding protein [Arabidopsis thaliana]
Length = 668
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 12/109 (11%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD-PHSVLRFAFVEFADEHGARAALNLG 176
++YV D+D ++ E L LF+ V + RVC D H L +A+V FA+ A A+
Sbjct: 46 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAME-- 103
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
L Y P+R P + + +P+ R V+ N+D +
Sbjct: 104 --SLNYAPIRDRPIRIMLSNRDPS-------TRLSGKGNVFIKNLDASI 143
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 19/103 (18%)
Query: 104 GRA-FRAQREDSVRRT----------------VYVSDIDQNITEERLAGLFSSCGQVVDC 146
GRA ++ RE+ +RR +Y+ ++D ++ +E+L +FS G V C
Sbjct: 298 GRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSC 357
Query: 147 RVCGDPHSVLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRV 187
+V + + R F FV +++ A A+ + G M+G P+ V
Sbjct: 358 KVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYV 400
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 26/143 (18%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--- 157
R + R+ S R + V++ ++D +I + L FSS G ++ C+V D V R
Sbjct: 116 RIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMD--VVGRSKG 173
Query: 158 FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT- 215
+ FV+F E A+AA++ L G +L V V F+ R + R
Sbjct: 174 YGFVQFEKEETAQAAIDKLNGMLLNDKQVFV-----------GHFVRRQDRARSESGAVP 222
Query: 216 ----VYCTNIDKKVPQAEVKQFF 234
VY N+ K++ E+K+ F
Sbjct: 223 SFTNVYVKNLPKEITDDELKKTF 245
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|357437769|ref|XP_003589160.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355478208|gb|AES59411.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 647
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 15/114 (13%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAA 172
V ++YV D++ N+ + +L LF+ GQVV RVC D L + +V F + A A
Sbjct: 30 VTTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARA 89
Query: 173 LN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
L+ L T + +RV+ S R R+ + ++ N+DK +
Sbjct: 90 LDVLNFTPMNNKSIRVMYSH------------RDPSSRKSGTANIFIKNLDKTI 131
Score = 43.5 bits (101), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 100 KRLSGRAFRAQREDSVRR----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV 155
+ L GR + +E V + +Y+ ++D +IT+E+L +FS G + ++ DP+ V
Sbjct: 294 QELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKIMRDPNGV 353
Query: 156 LRFA-FVEFAD-EHGARAALNLGGTMLGYYPVRV 187
R + FV F+ E +RA + G M+ P+ V
Sbjct: 354 SRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYV 387
Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 67/142 (47%), Gaps = 22/142 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ S R++ +++ ++D+ I + L FSS GQ++ C++ D + +
Sbjct: 104 RVMYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDGSGQSKGYG 163
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV+F E A+ A++ L G ++ V V FL R +D + S+T
Sbjct: 164 FVQFEAEDSAQNAIDKLNGMLINDKQVFV-----------GHFL-RKQDRDNVLSKTKFN 211
Query: 216 -VYCTNIDKKVPQAEVKQFFEA 236
VY N+ + + ++K F A
Sbjct: 212 NVYVKNLSESFTEDDLKNEFGA 233
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|398013689|ref|XP_003860036.1| RNA-binding protein, putative [Leishmania donovani]
gi|322498255|emb|CBZ33329.1| RNA-binding protein, putative [Leishmania donovani]
Length = 409
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADE 166
R Y+ +ID+++T + L +F CG ++DC + G RF F++FA E
Sbjct: 8 TRFGCYIGNIDRSVTIDMLKQVFCQCGTIIDCSLNGREGDPYRFGFIDFATE 59
>gi|401419092|ref|XP_003874036.1| putative RNA-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490270|emb|CBZ25530.1| putative RNA-binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 408
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADE 166
R Y+ +ID+++T + L +F CG ++DC + G RF F++FA E
Sbjct: 8 TRFGCYIGNIDRSVTIDMLKQVFCQCGTIIDCSLNGREGDPYRFGFIDFATE 59
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 36.6 bits (83), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ VC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIWVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|354491613|ref|XP_003507949.1| PREDICTED: ELAV-like protein 2 isoform 2 [Cricetulus griseus]
Length = 360
Score = 44.7 bits (104), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 24/132 (18%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADE 166
+ EDS + + V+ + QN+T+E L LF S G++ C++ D L + FV + D
Sbjct: 32 GKTEDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90
Query: 167 HGARAALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNID 222
A A+N L G L ++V PS +I N +Y + +
Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLP 133
Query: 223 KKVPQAEVKQFF 234
K + Q E++Q F
Sbjct: 134 KTMTQKELEQLF 145
>gi|405973173|gb|EKC37903.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 465
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 102 LSGRAFRA---QREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R QR+ S+R++ V++ +D++I + L FS+ G + C++ D H
Sbjct: 76 IKGRPIRITWYQRDPSLRKSGVGNVFIKKLDKSIDNKALYDTFSAFGNISSCKIVCDEHG 135
Query: 155 VLRFAFVEFADEHGARAALNLGGTML 180
+ FV F + AR A+ ML
Sbjct: 136 SRGYGFVHFETDEAARIAIEKVNGML 161
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE+ L FS+ G V+ RVC D L +A+V F A AL+
Sbjct: 11 SLYVRDLHPDVTEDMLFKKFSTAGPVLSVRVCRDMITRRSLGYAYVNFHQPADAERALDT 70
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R+ T+ R R+ V+ +DK + + F
Sbjct: 71 MNFDIIKGRPIRI------------TWYQRDPSLRKSGVGNVFIKKLDKSIDNKALYDTF 118
Query: 235 EA 236
A
Sbjct: 119 SA 120
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|354491611|ref|XP_003507948.1| PREDICTED: ELAV-like protein 2 isoform 1 [Cricetulus griseus]
Length = 359
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 24/132 (18%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADE 166
+ EDS + + V+ + QN+T+E L LF S G++ C++ D L + FV + D
Sbjct: 32 GKTEDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90
Query: 167 HGARAALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNID 222
A A+N L G L ++V PS +I N +Y + +
Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLP 133
Query: 223 KKVPQAEVKQFF 234
K + Q E++Q F
Sbjct: 134 KTMTQKELEQLF 145
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|297283068|ref|XP_001113342.2| PREDICTED: polyadenylate-binding protein 4 [Macaca mulatta]
Length = 657
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|354491615|ref|XP_003507950.1| PREDICTED: ELAV-like protein 2 isoform 3 [Cricetulus griseus]
Length = 356
Score = 44.7 bits (104), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 24/132 (18%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADE 166
+ EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D
Sbjct: 42 GKTEDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 100
Query: 167 HGARAALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNID 222
A A+N L G L ++V PS +I N +Y + +
Sbjct: 101 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLP 143
Query: 223 KKVPQAEVKQFF 234
K + Q E++Q F
Sbjct: 144 KTMTQKELEQLF 155
>gi|84468322|dbj|BAE71244.1| putative DNA binding protein [Trifolium pratense]
Length = 402
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 5/76 (6%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LG 176
T++V ++D N+T++ L +FS G++V ++ S R FV+F+D A A+ L
Sbjct: 260 TIFVGNLDPNVTDDHLRQVFSQYGELVHVKIP----SGKRCGFVQFSDRSSAEEAIRVLN 315
Query: 177 GTMLGYYPVRVLPSKT 192
GT+LG VR+ +T
Sbjct: 316 GTLLGGQNVRLSWGRT 331
Score = 37.0 bits (84), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 16/139 (11%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSS------CGQVVDCRVCGDPHSVLRFAFVE 162
++++D T++V D+ ++T+ L F + +VV R+ G + FV
Sbjct: 144 SRQDDGPDHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKG---YGFVR 200
Query: 163 FADE-HGARAALNLGGTMLGYYPVRVLPSK------TAILPVNPTFLPRSEDEREMCSRT 215
FADE RA + G + P+R+ P+ T + + P + E + + T
Sbjct: 201 FADEGEQMRAMTEMQGVLCSTRPMRIGPATNKNPAATTQAKASYSNTPGGQSENDPNNTT 260
Query: 216 VYCTNIDKKVPQAEVKQFF 234
++ N+D V ++Q F
Sbjct: 261 IFVGNLDPNVTDDHLRQVF 279
>gi|318087014|gb|ADV40099.1| TIA-1-like protein [Latrodectus hesperus]
Length = 166
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 103 SGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVE 162
S + + Q +S +T+YV ++D +TEE + LF G V ++ +P + + FVE
Sbjct: 16 SAMSNKEQSNESHPKTLYVGNLDPTVTEELILALFGQIGPVKGYKIIQEPGND-PYCFVE 74
Query: 163 FADEHGARAAL 173
F D A AAL
Sbjct: 75 FTDHQSAAAAL 85
>gi|148227694|ref|NP_001082505.1| embryonic polyadenylate-binding protein 2-A [Xenopus laevis]
gi|82241899|sp|Q804A5.1|EPA2A_XENLA RecName: Full=Embryonic polyadenylate-binding protein 2-A;
Short=Embryonic poly(A)-binding protein 2-A;
Short=XePABP2-A; Short=ePABP-2A; Short=ePABP2-A;
AltName: Full=Embryonic poly(A)-binding protein type
II-A; AltName: Full=PABPN2; AltName: Full=p32
gi|28273596|gb|AAO33927.1| putative polyA-binding protein PABPN2/ePABP2 [Xenopus laevis]
Length = 218
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 105 RAFRAQREDSV-RRTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRF 158
R A+ + + +R+VYV ++D T + L FSSCG + + C + G P +
Sbjct: 80 RPLSAEEKKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKG---Y 136
Query: 159 AFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPT 200
A++EFA+ + AA+ + T+ ++VLP +T + ++ T
Sbjct: 137 AYIEFAERNSVDAAVTMDETVFRGRTIKVLPKRTNMPGISST 178
>gi|392560296|gb|EIW53479.1| hypothetical protein TRAVEDRAFT_60908 [Trametes versicolor
FP-101664 SS1]
Length = 392
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVC-----GDPHSVLRFAFVEFADEHGA 169
+ + V+V ++ N+ E+ L +F S GQVV R+ G P + F EFAD A
Sbjct: 1 MSKVVFVGNVPYNMGEDSLIDVFKSVGQVVGLRLVFDRETGKPKG---YGFCEFADHETA 57
Query: 170 RAAL-NLGGTMLGYYPVRV 187
+A+ NL G +G P+R+
Sbjct: 58 LSAVRNLNGQEIGGRPLRI 76
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDENLKELF 211
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|296474988|tpg|DAA17103.1| TPA: ePABP2-like [Bos taurus]
Length = 271
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEH 167
++ ++ R++YV ++D T + L F+ CG++ + D S +A++EFA E
Sbjct: 133 EKAEADHRSIYVGNVDYGGTAQELEAYFNHCGEIHQVTILCDKFSGHPKGYAYIEFATES 192
Query: 168 GARAALNLGGTMLGYYPVRVLPSKT 192
A+AA+ L ++ ++VLP +T
Sbjct: 193 SAQAAVELDKSIFRGRVIKVLPKRT 217
>gi|224067280|ref|XP_002302445.1| predicted protein [Populus trichocarpa]
gi|222844171|gb|EEE81718.1| predicted protein [Populus trichocarpa]
Length = 429
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 20/108 (18%)
Query: 90 RRRNNFNQ----GRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVD 145
R+ + + Q G S + F++ DS T++V +D N+T+E L FS G++V
Sbjct: 269 RKSSGYQQQGGYGSNGASSQGFQSDG-DSSNATIFVGGLDPNVTDEDLKQPFSQYGEIVS 327
Query: 146 CRV-----CGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRV 187
++ CG FV+FA+ + A AL L GT++G VR+
Sbjct: 328 VKIPVSKGCG---------FVQFANRNNAEEALQKLNGTVIGKQTVRL 366
>gi|167519406|ref|XP_001744043.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778005|gb|EDQ91621.1| predicted protein [Monosiga brevicollis MX1]
Length = 563
Score = 44.7 bits (104), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 22/141 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R AQR + RR+ +++ ++++ I + L FS+ G ++ C+V D R +
Sbjct: 80 RIMWAQRNPAARRSGAGNIFIKNLNKEIDNKALYDTFSAFGTILSCKVAADEKGESRGYG 139
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV F E A+ A++ + G ML V V FL R E E++ RT
Sbjct: 140 FVHFEKEEDAQKAIDTVNGKMLLKQVVTVT-----------KFLSRKEREQQ-GGRTYTN 187
Query: 216 VYCTNI-DKKVPQAEVKQFFE 235
+Y N+ D ++K+ FE
Sbjct: 188 IYVKNLPDSYATNDDLKKLFE 208
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 13/121 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNL 175
++YV D+ +TE L FS G V+ RVC D S L +A+V + A+ AL
Sbjct: 9 SLYVGDLHPEVTEATLYEFFSQMGSVISIRVCRDAVSRQSLGYAYVNYQQHADAKHALE- 67
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
L + + P + NP R + ++ N++K++ + F
Sbjct: 68 ---ELNFEKIHDKPCRIMWAQRNPA-------ARRSGAGNIFIKNLNKEIDNKALYDTFS 117
Query: 236 A 236
A
Sbjct: 118 A 118
>gi|449266192|gb|EMC77278.1| ELAV-like protein 2 [Columba livia]
Length = 388
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 18/127 (14%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 63 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDA 121
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 122 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 167
Query: 229 EVKQFFE 235
E++Q F
Sbjct: 168 ELEQLFS 174
>gi|355745175|gb|EHH49800.1| hypothetical protein EGM_00521 [Macaca fascicularis]
Length = 635
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 58 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 117
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 118 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 166
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 167 NVYIKNFGEEVDDESLKELF 186
>gi|344248615|gb|EGW04719.1| ELAV-like protein 2 [Cricetulus griseus]
Length = 347
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 24/132 (18%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADE 166
+ EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D
Sbjct: 32 GKTEDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDP 90
Query: 167 HGARAALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNID 222
A A+N L G L ++V PS +I N +Y + +
Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLP 133
Query: 223 KKVPQAEVKQFF 234
K + Q E++Q F
Sbjct: 134 KTMTQKELEQLF 145
>gi|145349140|ref|XP_001418998.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579228|gb|ABO97291.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 572
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADE 166
AQ+ + ++YV D++ ++TE +L FSS G VV RVC D L +A+V F
Sbjct: 29 AQQPGAGTSSLYVGDLETSVTEAQLYEKFSSIGPVVSIRVCRDLITRRSLGYAYVNFQSP 88
Query: 167 HGARAALN-LGGTMLGYYPVRVLPSK 191
+ A A++ L ++ P+RVL S+
Sbjct: 89 NDAAHAIDVLNFQVINGKPIRVLYSQ 114
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 108 RAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFAD- 165
R + E +Y+ +++ +E+L LF G + CRV D V R AFV F+
Sbjct: 309 RERMEKMAGANLYIKNLEDGTDDEKLRELFKEFGTITSCRVMRDASGVSRGSAFVAFSSP 368
Query: 166 EHGARAALNLGGTMLGYYPVRV 187
+ RA + G M+G P+ V
Sbjct: 369 DEATRAVTEMNGKMVGAKPLYV 390
Score = 37.7 bits (86), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 79 QSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFS 138
Q+AIDN N G RA R+ ++ VYV ++ +N+++E+L F+
Sbjct: 179 QAAIDNVNGMELNDKQVYVGP--FQRRAERSNTGEAKFNNVYVKNLSENLSDEKLREKFA 236
Query: 139 SCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL 173
G V C + D + F FV + + GA AA+
Sbjct: 237 EHGAVTSCVIMRDEEGKSKGFGFVCYEEPEGAAAAV 272
>gi|157867749|ref|XP_001682428.1| putative RNA-binding protein [Leishmania major strain Friedlin]
gi|68125882|emb|CAJ03486.1| putative RNA-binding protein [Leishmania major strain Friedlin]
Length = 409
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADE 166
R Y+ +ID+++T + L +F CG ++DC + G RF F++FA E
Sbjct: 8 TRFGCYIGNIDRSVTIDMLKQVFCQCGTIIDCSLNGREGDPYRFGFIDFATE 59
>gi|399217186|emb|CCF73873.1| unnamed protein product [Babesia microti strain RI]
Length = 145
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 103 SGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQV------VDCRVCGDPHSVL 156
+ R ++D RR+VYV +++ + T + L F SCGQ+ VD + G P
Sbjct: 27 TDRTNDTSQDDVDRRSVYVGNVEYSATPQNLQEYFKSCGQINRITIMVD-KWTGHPKG-- 83
Query: 157 RFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAI 194
+A++EFA E AL L T+ ++V + I
Sbjct: 84 -YAYIEFAQEESVENALLLNETLFKERLIKVTSKRKNI 120
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|348525751|ref|XP_003450385.1| PREDICTED: ELAV-like protein 2-like [Oreochromis niloticus]
Length = 440
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 24/129 (18%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D L + FV + D A
Sbjct: 115 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDA 173
Query: 170 RAALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 174 EKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTM 216
Query: 226 PQAEVKQFF 234
Q E++Q F
Sbjct: 217 TQKELEQLF 225
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|294939182|ref|XP_002782349.1| RNA-binding motif, single-stranded-interacting protein, putative
[Perkinsus marinus ATCC 50983]
gi|239893941|gb|EER14144.1| RNA-binding motif, single-stranded-interacting protein, putative
[Perkinsus marinus ATCC 50983]
Length = 266
Score = 44.7 bits (104), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ ++RR+ VYV ++D+NI + L FS G ++ C+V P R F
Sbjct: 120 RLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFG 179
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRV 187
FV F + A AA+ L G +G V V
Sbjct: 180 FVHFESDESAEAAIAKLNGMQIGEKTVYV 208
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDENLKELF 211
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|313229163|emb|CBY23748.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+RR+ V++ ++D++I + L FSS G ++ C+V D + F F
Sbjct: 74 RIMWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNILSCKVVCDINGSKGFGF 133
Query: 161 VEF-ADEHGARAALNLGGTML 180
V + +DE RA + G ++
Sbjct: 134 VHYESDESAQRAIEKVNGMLM 154
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L F + G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R V+ N+D+ +
Sbjct: 63 MNFDVIKGKPIRIMWSQ------------RDPSLRRSGQGNVFIKNLDRSI 101
>gi|194910009|ref|XP_001982056.1| GG12380 [Drosophila erecta]
gi|190656694|gb|EDV53926.1| GG12380 [Drosophila erecta]
Length = 464
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
++S +T+YV ++D +++E+ L LF + G V C++ +P + +AF+E+++ A
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALFGTMGPVKSCKIIREPGND-PYAFIEYSNYQAATT 60
Query: 172 ALN 174
AL
Sbjct: 61 ALT 63
Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARA 171
S ++V D+ I E L F+ G++ +CR+ DPH++ +AFV F + A
Sbjct: 92 SSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAEN 151
Query: 172 ALN-LGGTMLGYYPVRV 187
A+ + G +G +R
Sbjct: 152 AIQAMNGQWIGSRSIRT 168
>gi|389584751|dbj|GAB67483.1| RNA binding protein [Plasmodium cynomolgi strain B]
Length = 601
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
D + +Y+ +I +N +E+ + LF + G ++ + + AF+EF +E +AA
Sbjct: 162 DVFSKIIYMENIPENCSEDDIKALFKNVGTTTSYKLQYNEQKKMNTAFIEFTNEEHVKAA 221
Query: 173 LNLGGTMLG 181
L L GT +G
Sbjct: 222 LLLNGTKIG 230
Score = 40.8 bits (94), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL 173
S+ VYV ++ ++TE+ + F SC +++ P ++ +EF G A
Sbjct: 6 SIANVVYVKNLSTDVTEKDIKEKFESCDEIIGVVFKNFPGKNQKYCQIEFKSSEGITKAS 65
Query: 174 NLGGTMLGYYPVRVLPSKTAILPV--NPTF 201
L G +L P+ V T I P+ NP F
Sbjct: 66 RLNGELLLNVPMVV----TVIEPISHNPAF 91
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDENLKELF 211
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|313219101|emb|CBY43303.1| unnamed protein product [Oikopleura dioica]
Length = 512
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+RR+ V++ ++D++I + L FSS G ++ C+V D + F F
Sbjct: 74 RIMWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNILSCKVVCDINGSKGFGF 133
Query: 161 VEF-ADEHGARAALNLGGTML 180
V + +DE RA + G ++
Sbjct: 134 VHYESDESAQRAIEKVNGMLM 154
Score = 38.5 bits (88), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L F + G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R V+ N+D+ +
Sbjct: 63 MNFDVIKGKPIRIMWSQ------------RDPSLRRSGQGNVFIKNLDRSI 101
>gi|195504962|ref|XP_002099304.1| GE10834 [Drosophila yakuba]
gi|194185405|gb|EDW99016.1| GE10834 [Drosophila yakuba]
Length = 464
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
++S +T+YV ++D +++E+ L LF + G V C++ +P + +AF+E+++ A
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALFGTMGPVKSCKIIREPGND-PYAFIEYSNYQAATT 60
Query: 172 ALN 174
AL
Sbjct: 61 ALT 63
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARA 171
S ++V D+ I E L F+ G++ +CR+ DPH++ +AFV F + A
Sbjct: 92 SSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAEN 151
Query: 172 ALN-LGGTMLGYYPVRV 187
A+ + G +G +R
Sbjct: 152 AIQAMNGQWIGSRSIRT 168
>gi|79313347|ref|NP_001030753.1| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana]
gi|332643308|gb|AEE76829.1| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana]
Length = 934
Score = 44.7 bits (104), Expect = 0.041, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN 174
+++ + VS++ ++T E+L LFS CG VVDC + H A++E+++ A AAL
Sbjct: 349 LKKFLQVSNLSPSLTTEQLRQLFSFCGTVVDCSITDSKH----IAYIEYSNSEEATAALA 404
Query: 175 LGGT 178
L T
Sbjct: 405 LNNT 408
>gi|297847300|ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
gi|297337373|gb|EFH67790.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
Length = 669
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+D +T+ +L FS GQVV RVC D + L + +V +A A ALN
Sbjct: 40 SLYVGDLDATVTDSQLFEAFSQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 99
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L L +RV+ + R R+ ++ N+DK + + + F
Sbjct: 100 LNFMALNGRAIRVM------------YSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETF 147
Query: 235 EA 236
A
Sbjct: 148 SA 149
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 9/97 (9%)
Query: 102 LSGRAFRAQ---REDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
L+GRA R R+ S+R++ +++ ++D++I + L FS+ G ++ C+V DP
Sbjct: 105 LNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSG 164
Query: 155 VLR-FAFVEF-ADEHGARAALNLGGTMLGYYPVRVLP 189
+ + FV++ DE RA L G +L V V P
Sbjct: 165 QSKGYGFVQYDTDEAAQRAIDKLNGMLLNDKQVYVGP 201
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 105 RAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEF 163
++ + + S +YV ++D+++T+++L F+ G + C+V DP V R + FV F
Sbjct: 309 QSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPTGVSRGSGFVAF 368
Query: 164 A-DEHGARAALNLGGTMLGYYPVRV 187
+ E +RA + G M+ P+ V
Sbjct: 369 STPEEASRAITEMNGKMIVTKPLYV 393
>gi|260943169|ref|XP_002615883.1| hypothetical protein CLUG_04765 [Clavispora lusitaniae ATCC 42720]
gi|238851173|gb|EEQ40637.1| hypothetical protein CLUG_04765 [Clavispora lusitaniae ATCC 42720]
Length = 385
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV-LRFAFVEFADEHGARAAL 173
R+ +YV + ++I E+ L FS+ G V ++ D + +AFVEF DE GA AAL
Sbjct: 43 RKVLYVGGLPKSINEDALNEKFSASGPVFSVKILNDKNKQGFNYAFVEFVDEAGAAAAL 101
>gi|149016025|gb|EDL75306.1| rCG64103 [Rattus norvegicus]
Length = 269
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 111 REDSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGA 169
R D +RRT++V +++ Q ++ +++ F G+V + D +FAFVEFAD++
Sbjct: 63 RTDEIRRTIHVGNLNSQTMSADQILEFFKQVGEVKFFPMADDETQPTQFAFVEFADQNSV 122
Query: 170 RAALNLGGTMLGYYPVRVLPSKTAIL 195
AL G G +++ S+ AI+
Sbjct: 123 PRALAFNGVTFGDRGLKINHSQNAIV 148
>gi|47933430|gb|AAT39343.1| polyadenylate binding protein [Oikopleura dioica]
Length = 610
Score = 44.7 bits (104), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+RR+ V++ ++D++I + L FSS G ++ C+V D + F F
Sbjct: 74 RIMWSQRDPSLRRSGQGNVFIKNLDRSIDNKALYDTFSSFGNILSCKVVCDINGSKGFGF 133
Query: 161 VEF-ADEHGARAALNLGGTML 180
V + +DE RA + G ++
Sbjct: 134 VHYESDESAQRAIEKVNGMLM 154
Score = 38.5 bits (88), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L F + G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLHPDITEAMLYDKFQASGPVLSIRVCRDMVTRRSLGYAYVNFQQPADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R V+ N+D+ +
Sbjct: 63 MNFDVIKGKPIRIMWSQ------------RDPSLRRSGQGNVFIKNLDRSI 101
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|384244690|gb|EIE18189.1| RNA-binding domain-containing protein [Coccomyxa subellipsoidea
C-169]
Length = 210
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 10/110 (9%)
Query: 92 RNNFNQGRKRLSGR---AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV 148
R +G GR A A RED+ R+VYV +D T E L F SCG V +
Sbjct: 51 REQQGKGEDSTLGRTDGADAALREDADNRSVYVGQVDYACTPEELQMHFQSCGTVNRVTI 110
Query: 149 C----GDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAI 194
G+P +A++EF + AL L + L ++VLP +T +
Sbjct: 111 LTDKFGNPKG---YAYIEFLETDAVANALLLDSSELRGRELKVLPKRTNV 157
>gi|356502327|ref|XP_003519971.1| PREDICTED: polyadenylate-binding protein 5-like [Glycine max]
Length = 616
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN-LG 176
+YV ++D NI +++L LFS G + C+V +P+ + + FV F+ A AL+ +
Sbjct: 290 LYVKNLDYNINDDKLKELFSEFGTITSCKVMLEPNGRSKGYGFVAFSAPRNANRALHEMN 349
Query: 177 GTMLGYYPVRV 187
G M+G P+ V
Sbjct: 350 GKMIGRRPLYV 360
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD-PHSVLRFAFVEFADEHGARAAL-NL 175
++YV D+++N+ E +L LF+ G + RVC D + L +A+V F + A A+ +L
Sbjct: 7 SLYVGDLERNVDEAQLFQLFARVGPIFSIRVCRDETNRSLGYAYVNFVNPQDAANAMEHL 66
Query: 176 GGTMLGYYPVRVL 188
T L +RV+
Sbjct: 67 NFTPLNGKSIRVM 79
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDENLKELF 211
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKVLYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|413956150|gb|AFW88799.1| hypothetical protein ZEAMMB73_294352 [Zea mays]
Length = 735
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 15/119 (12%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN-L 175
+YV D+ +++ EE L FS G V RVC D + LR+ +V + A AL+ L
Sbjct: 123 LYVGDLHEDVAEEHLFEAFSKIGTVTSVRVCRDNATSRSLRYGYVNYFSRADAVVALDKL 182
Query: 176 GGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+++ P+RV+ S R D R ++ N+ V A +++ F
Sbjct: 183 NHSLVLDKPIRVMWSN------------RDPDARRSGVGNIFVKNLSSSVDNASLQELF 229
Score = 37.0 bits (84), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ RR+ ++V ++ ++ L LFS G V+ C+V + R +
Sbjct: 193 RVMWSNRDPDARRSGVGNIFVKNLSSSVDNASLQELFSKFGDVLSCKVAKNEDGTSRGYG 252
Query: 160 FVEFADEHGARAAL-NLGGTM 179
FV+F + A A+ NL G++
Sbjct: 253 FVQFTSQESADEAIGNLNGSL 273
>gi|345321135|ref|XP_003430388.1| PREDICTED: polyadenylate-binding protein 2-like isoform 2
[Ornithorhynchus anatinus]
Length = 338
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 204 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKESVRT 260
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
++ L ++ ++V+P +T
Sbjct: 261 SMALDESLFRGRQIKVIPKRT 281
>gi|334183839|ref|NP_177322.2| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|334183841|ref|NP_001185373.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|322510110|sp|Q05196.3|PABP5_ARATH RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|332197109|gb|AEE35230.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|332197110|gb|AEE35231.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
Length = 682
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 12/109 (11%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD-PHSVLRFAFVEFADEHGARAALNLG 176
++YV D+D ++ E L LF+ V + RVC D H L +A+V FA+ A A+
Sbjct: 60 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAME-- 117
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
L Y P+R P + + +P+ R V+ N+D +
Sbjct: 118 --SLNYAPIRDRPIRIMLSNRDPS-------TRLSGKGNVFIKNLDASI 157
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 19/103 (18%)
Query: 104 GRA-FRAQREDSVRRT----------------VYVSDIDQNITEERLAGLFSSCGQVVDC 146
GRA ++ RE+ +RR +Y+ ++D ++ +E+L +FS G V C
Sbjct: 312 GRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSC 371
Query: 147 RVCGDPHSVLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRV 187
+V + + R F FV +++ A A+ + G M+G P+ V
Sbjct: 372 KVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYV 414
Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 26/143 (18%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--- 157
R + R+ S R + V++ ++D +I + L FSS G ++ C+V D V R
Sbjct: 130 RIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMD--VVGRSKG 187
Query: 158 FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT- 215
+ FV+F E A+AA++ L G +L V V F+ R + R
Sbjct: 188 YGFVQFEKEETAQAAIDKLNGMLLNDKQVFV-----------GHFVRRQDRARSESGAVP 236
Query: 216 ----VYCTNIDKKVPQAEVKQFF 234
VY N+ K++ E+K+ F
Sbjct: 237 SFTNVYVKNLPKEITDDELKKTF 259
>gi|13365525|dbj|BAB39136.1| poly(A)-binding protein [Carassius auratus]
Length = 154
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 21/136 (15%)
Query: 109 AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFA 164
+QR+ S+R++ +++ ++D++I + L FS+ G ++ C+V D + + FV F
Sbjct: 3 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFE 62
Query: 165 DEHGA-RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT-----VYC 218
A RA + G +L V V F R E E EM +R VY
Sbjct: 63 THEAAERAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAEMGARAKEFTNVYI 111
Query: 219 TNIDKKVPQAEVKQFF 234
N + + ++++ F
Sbjct: 112 KNFGEDMEDEKLREIF 127
>gi|126334000|ref|XP_001364864.1| PREDICTED: ELAV-like protein 2-like isoform 1 [Monodelphis
domestica]
Length = 360
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 24/129 (18%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTM 136
Query: 226 PQAEVKQFF 234
Q E++Q F
Sbjct: 137 TQKELEQLF 145
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDENLKELF 211
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|345479146|ref|XP_003423886.1| PREDICTED: sex-lethal homolog isoform 2 [Nasonia vitripennis]
Length = 393
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 11/166 (6%)
Query: 17 TNNNKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADD 76
+ N+ NL T ++L MF + P+ Y + F +N A+D
Sbjct: 93 SRNDDRTNLIINYLPQSMTEKELYSMFVTIGPVESCRVMKDYKTGYSYGFGFVNYTKAED 152
Query: 77 NKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGL 136
+AI+ N KRL R E+ +YV+++ +NITE+++ +
Sbjct: 153 -ALTAINTLNG-------LQVQNKRLKVSFARPSGEEIKETNLYVTNLPRNITEKQVEEI 204
Query: 137 FSSCGQVVDCRVCGDPHSVL--RFAFVEFADEHGARAALN-LGGTM 179
FS GQ+V + D + L AFV + A+ A+N L GT+
Sbjct: 205 FSKFGQIVQKNILKDKLTGLPRGVAFVRYDKREEAQDAINQLHGTI 250
>gi|355709043|gb|AES03462.1| poly binding protein, cytoplasmic 1 [Mustela putorius furo]
Length = 230
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ +++ ++D++I + L FS+ G ++ C+V D + + F
Sbjct: 57 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 116
Query: 161 VEFADEHGA-RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A RA + G +L V V F R E E E+ +R
Sbjct: 117 VHFETQEAAERAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGARAKEFT 165
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N + + +K F
Sbjct: 166 NVYIKNFGEDMDDERLKDLF 185
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 21/141 (14%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 84 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 143
Query: 161 VEFADEHGA-RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A RA + G +L V V F R E E EM ++
Sbjct: 144 VHFETQDAADRAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAEMGAKAKEFT 192
Query: 216 -VYCTNIDKKVPQAEVKQFFE 235
VY N + +K+ F+
Sbjct: 193 NVYIKNFGDDMDDQRLKELFD 213
Score = 40.0 bits (92), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 13 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 72
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 73 MNFDVVKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 111
>gi|30687254|ref|NP_189032.2| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana]
gi|334185580|ref|NP_001189958.1| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana]
gi|332643307|gb|AEE76828.1| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana]
gi|332643309|gb|AEE76830.1| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana]
Length = 987
Score = 44.7 bits (104), Expect = 0.043, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN 174
+++ + VS++ ++T E+L LFS CG VVDC + H A++E+++ A AAL
Sbjct: 349 LKKFLQVSNLSPSLTTEQLRQLFSFCGTVVDCSITDSKH----IAYIEYSNSEEATAALA 404
Query: 175 LGGT 178
L T
Sbjct: 405 LNNT 408
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 44.7 bits (104), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDENLKELF 211
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|320580160|gb|EFW94383.1| Splicing factor [Ogataea parapolymorpha DL-1]
Length = 295
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 19/146 (13%)
Query: 101 RLSGRAFRAQREDSVR--RTVYVSDID-QNITEERLAGLFSSCGQVVDCR--VCGDPHSV 155
++S R +R+ ++ R VYVSD+D + E++L+ +FS G + R V D S
Sbjct: 98 KISNPEARQERKGALEEGRQVYVSDLDFYKVDEDKLSEIFSKYGDIEMIRIPVRRDEKSK 157
Query: 156 L---RFAFVEFADEHGARAALNLGGTMLGYYPVRV---LPSKTAILPVNPTFLPRSEDER 209
FAF+ F A +L L G +L P+++ P K + + R+
Sbjct: 158 KLNNGFAFISFRSSSDAVKSLELDGKLLAGRPMKIELATPKKKKVSVLGTGKFDRA---- 213
Query: 210 EMCSRTVYCTNIDKKVPQAEVKQFFE 235
RT+ N+D K+ +K FE
Sbjct: 214 ----RTISVLNVDDKINTETLKAIFE 235
>gi|281344898|gb|EFB20482.1| hypothetical protein PANDA_020836 [Ailuropoda melanoleuca]
Length = 674
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 96 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 155
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 156 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 204
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 205 NVYIKNFGEEVDDESLKELF 224
>gi|410978372|ref|XP_003995567.1| PREDICTED: ELAV-like protein 2-like isoform 2 [Felis catus]
Length = 360
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 24/129 (18%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTM 136
Query: 226 PQAEVKQFF 234
Q E++Q F
Sbjct: 137 TQKELEQLF 145
>gi|410907089|ref|XP_003967024.1| PREDICTED: la-related protein 7-like [Takifugu rubripes]
Length = 519
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 43/98 (43%), Gaps = 17/98 (17%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRV-----CGDPHSVLRFAFVEFADEHGARA 171
RTVYV + +++T + +F+ CG VV V GDP FAFVEF E AR
Sbjct: 118 RTVYVELLPKDVTHGWIERVFAKCGTVVYVSVPRYKSSGDPKG---FAFVEFEKEEEARQ 174
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPV----NPTFLPRS 205
A+ + P P K I P P LP S
Sbjct: 175 AIEVLNN-----PPEDAPRKAGIFPKTRCGKPVHLPAS 207
>gi|378732913|gb|EHY59372.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 779
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 62 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 121
Query: 175 LGGTMLGYYPVRVLPSK 191
L T + P R++ S+
Sbjct: 122 LNYTSIKGRPCRIMWSQ 138
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL 173
VY+ +ID+++++E LF G+VV + D + R F FV FA A A+
Sbjct: 244 VYIKNIDESVSDEEFTKLFEPYGEVVSATITRDENGKSRGFGFVNFASHESAAKAV 299
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|294877113|ref|XP_002767904.1| protein HSH49, putative [Perkinsus marinus ATCC 50983]
gi|239869872|gb|EER00622.1| protein HSH49, putative [Perkinsus marinus ATCC 50983]
Length = 289
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ ++RR+ VYV ++D+NI + L FS G ++ C+V P R F
Sbjct: 121 RLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFG 180
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRV 187
FV F + A AA+ L G +G V V
Sbjct: 181 FVHFESDESAEAAIAKLNGMQIGEKTVYV 209
Score = 37.0 bits (84), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 13/105 (12%)
Query: 74 ADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFR--AQREDSVRRT---VYVSDIDQNI 128
+D++ ++AI + N G K + F+ A R D + VY+ I +
Sbjct: 186 SDESAEAAI-------AKLNGMQIGEKTVYVAQFKKTADRSDGSPKNFTNVYIKHIPPSW 238
Query: 129 TEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL 173
TEE++ F + G++ + DP RFAFV FA+ ARAA+
Sbjct: 239 TEEKIREEFGAFGEITSFAMQTDPKG-RRFAFVNFAEFEQARAAV 282
>gi|126304970|ref|XP_001376941.1| PREDICTED: embryonic polyadenylate-binding protein 2-like
[Monodelphis domestica]
Length = 322
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEH 167
++ +S +R+VYV ++D + T + L FS CG++ + D +S +A++EFA E
Sbjct: 163 EKVESDQRSVYVGNVDYSGTAKELESHFSCCGEINRVTILCDKYSGHPKGYAYIEFAHED 222
Query: 168 GARAALNLGGTMLGYYPVRVLPSKT 192
+ A L T ++VLP +T
Sbjct: 223 SVKTAAELDETTFRGRIIKVLPKRT 247
>gi|6754264|ref|NP_034616.1| ELAV-like protein 2 isoform 2 [Mus musculus]
gi|13124206|sp|Q60899.1|ELAV2_MOUSE RecName: Full=ELAV-like protein 2; AltName: Full=ELAV-like neuronal
protein 1; AltName: Full=Hu-antigen B; Short=HuB;
AltName: Full=Nervous system-specific RNA-binding
protein Mel-N1
gi|1144004|gb|AAC52644.1| nervous system-specific RNA binding protein Mel-N1 [Mus musculus]
gi|15020258|gb|AAK74154.1| ELAV-like neuronal protein-1 [Mus musculus]
gi|148699000|gb|EDL30947.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Mus musculus]
Length = 360
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 24/129 (18%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTM 136
Query: 226 PQAEVKQFF 234
Q E++Q F
Sbjct: 137 TQKELEQLF 145
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 44.7 bits (104), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|448089168|ref|XP_004196733.1| Piso0_003958 [Millerozyma farinosa CBS 7064]
gi|448093378|ref|XP_004197764.1| Piso0_003958 [Millerozyma farinosa CBS 7064]
gi|359378155|emb|CCE84414.1| Piso0_003958 [Millerozyma farinosa CBS 7064]
gi|359379186|emb|CCE83383.1| Piso0_003958 [Millerozyma farinosa CBS 7064]
Length = 925
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 103 SGRAFRAQREDSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLR---- 157
S A + E +R +YVS++D + ++E L +F+ G + + +
Sbjct: 708 SPSASKKNEEPDQKREIYVSNLDFKKVSETTLRSVFARFGDIDTITLPVSEEQKAQGNLN 767
Query: 158 --FAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPT 200
+AFV F H A+ AL L GT + + V PSK +NPT
Sbjct: 768 RGYAFVVFHSSHAAKKALQLNGTTVEGRKMSVTPSKRGRTTLNPT 812
>gi|348587076|ref|XP_003479294.1| PREDICTED: ELAV-like protein 2 isoform 1 [Cavia porcellus]
Length = 360
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 24/129 (18%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTM 136
Query: 226 PQAEVKQFF 234
Q E++Q F
Sbjct: 137 TQKELEQLF 145
>gi|449514035|ref|XP_002190678.2| PREDICTED: ELAV-like protein 2-like [Taeniopygia guttata]
Length = 380
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 18/127 (14%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 63 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGPSLGYGFVNYVDPKDA 121
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
+ A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 122 KKAVNTLNGFRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQT 167
Query: 229 EVKQFFE 235
E++Q F
Sbjct: 168 ELEQLFS 174
>gi|388496342|gb|AFK36237.1| unknown [Medicago truncatula]
Length = 202
Score = 44.7 bits (104), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 66/156 (42%), Gaps = 12/156 (7%)
Query: 104 GRAFRAQRE--------DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS- 154
GR FR ++E + +RTV+ + TE + FS G+V D R+ D +S
Sbjct: 18 GRRFRDKKENVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSR 77
Query: 155 -VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTA--ILPVNPTFLPRSEDEREM 211
++EF D A+ L G +L PV V PS+ ++ N +
Sbjct: 78 RSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASSGAAVVGPYGA 137
Query: 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPC 247
R +Y N+ + +A +++ FE EV LP
Sbjct: 138 VDRKLYVGNLHFNMTEANLREIFEPFGQIEVVQLPL 173
>gi|443682493|gb|ELT87074.1| hypothetical protein CAPTEDRAFT_222846 [Capitella teleta]
Length = 841
Score = 44.7 bits (104), Expect = 0.046, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALNL 175
R +VS++ ++ E+RL +FS G+V++ R+ + + FA++EF DE A+ AL L
Sbjct: 604 RKAFVSNLSYDVDEQRLQEIFSKLGEVINVRLVTNFKGQSKGFAYIEFKDELLAQKALTL 663
Query: 176 GGTMLGYYPVRV 187
M+ P+ V
Sbjct: 664 DRMMVNNRPMFV 675
>gi|47575772|ref|NP_001001230.1| polyadenylate-binding protein 2 [Xenopus (Silurana) tropicalis]
gi|82237242|sp|Q6NVP7.1|PABP2_XENTR RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2; AltName: Full=Nuclear
poly(A)-binding protein 1; AltName: Full=Poly(A)-binding
protein II; Short=PABII; AltName:
Full=Polyadenylate-binding nuclear protein 1
gi|45708904|gb|AAH67958.1| poly(A) binding protein, nuclear 1 [Xenopus (Silurana) tropicalis]
gi|89268254|emb|CAJ82538.1| poly(A) binding protein, nuclear 1 [Xenopus (Silurana) tropicalis]
Length = 296
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 163 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKG---FAYIEFSDKESVRT 219
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L L ++ ++V+P +T
Sbjct: 220 SLALDESLFRGRQIKVVPKRT 240
>gi|119578987|gb|EAW58583.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_b [Homo sapiens]
Length = 373
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 18/126 (14%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 49 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 107
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 108 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 153
Query: 229 EVKQFF 234
E++Q F
Sbjct: 154 ELEQLF 159
>gi|62088168|dbj|BAD92531.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) variant [Homo sapiens]
Length = 367
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 24/129 (18%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 43 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 101
Query: 170 RAALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 102 EKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTM 144
Query: 226 PQAEVKQFF 234
Q E++Q F
Sbjct: 145 TQKELEQLF 153
>gi|33504434|emb|CAD44189.1| putative poly(A) binding protein [Mangifera indica]
Length = 130
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEF-ADEHGARAALNLG 176
+Y+ ++D +I +++L LFS G + C+V DP+ + R + FV F E +RA L +
Sbjct: 16 LYMKNLDYSIDDDKLKQLFSQFGSITSCKVMRDPNGISRGSGFVAFTTPEEASRAILEMN 75
Query: 177 GTMLGYYPVRV 187
G M+ P+ V
Sbjct: 76 GKMVVGKPLYV 86
>gi|295424162|ref|NP_001171354.1| ELAV-like protein 2 isoform 4 [Mus musculus]
gi|74206254|dbj|BAE24886.1| unnamed protein product [Mus musculus]
gi|149044490|gb|EDL97749.1| rCG53485, isoform CRA_a [Rattus norvegicus]
Length = 359
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 24/129 (18%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTM 136
Query: 226 PQAEVKQFF 234
Q E++Q F
Sbjct: 137 TQKELEQLF 145
>gi|521144|gb|AAA69698.1| ELAV-like neuronal protein 1 [Homo sapiens]
Length = 359
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 24/129 (18%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTM 136
Query: 226 PQAEVKQFF 234
Q E++Q F
Sbjct: 137 TQKELEQLF 145
>gi|383417509|gb|AFH31968.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 456
Score = 44.3 bits (103), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 21/150 (14%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ +++ ++D++I + L FS+ G ++ C+V D + + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 161 VEFADEHGA-RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A RA + G +L V V F R E E E+ +R
Sbjct: 143 VHFETQEAAERAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGARAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFEAACGGEVRT 244
VY N + + +K F A +V T
Sbjct: 192 NVYIKNFGEDMDDERLKDLFGPALSVKVMT 221
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 12/124 (9%)
Query: 76 DNKQSAIDNFNNNRRRRNNFNQGRKRLS-------GRAFRAQREDSVRR----TVYVSDI 124
++ Q A+D N GR + R F ++D + R +YV ++
Sbjct: 239 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 298
Query: 125 DQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD-EHGARAALNLGGTMLGYY 183
D I +ERL FS G + +V + F FV F+ E +A + G ++
Sbjct: 299 DDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 358
Query: 184 PVRV 187
P+ V
Sbjct: 359 PLYV 362
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ PVR++ S+ R R+ ++ N+DK +
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI 110
>gi|147907300|ref|NP_001080719.1| polyadenylate-binding protein 2-B [Xenopus laevis]
gi|82241535|sp|Q7ZXB8.1|PAB2B_XENLA RecName: Full=Polyadenylate-binding protein 2-B; Short=PABP-2-B;
Short=Poly(A)-binding protein 2-B; AltName: Full=Nuclear
poly(A)-binding protein 1-B; AltName:
Full=Poly(A)-binding protein II-B; Short=PABII-B;
AltName: Full=Polyadenylate-binding nuclear protein 1-B;
AltName: Full=XLnPABP2-B; AltName: Full=nPABP2-B;
AltName: Full=xPABPII-B
gi|27924235|gb|AAH45063.1| Pabpn1-prov protein [Xenopus laevis]
Length = 295
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 162 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKG---FAYIEFSDKESVRT 218
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L L ++ ++V+P +T
Sbjct: 219 SLALDESLFRGRQIKVVPKRT 239
>gi|905387|gb|AAA70417.1| Hel-N2 [Homo sapiens]
Length = 346
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 24/129 (18%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTM 136
Query: 226 PQAEVKQFF 234
Q E++Q F
Sbjct: 137 TQKELEQLF 145
>gi|397521307|ref|XP_003830738.1| PREDICTED: ELAV-like protein 2 isoform 1 [Pan paniscus]
Length = 359
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 24/129 (18%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTM 136
Query: 226 PQAEVKQFF 234
Q E++Q F
Sbjct: 137 TQKELEQLF 145
>gi|395856895|ref|XP_003800852.1| PREDICTED: embryonic polyadenylate-binding protein 2 [Otolemur
garnettii]
Length = 274
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 11/102 (10%)
Query: 99 RKRLSGRAFRAQREDSVR---RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCG 150
R ++ G F E+ + R++YV ++D T E L F+ CG++ + C + G
Sbjct: 122 RPKIPGCPFPGNPEEKMEADHRSIYVGNVDYGGTAEELEAHFNCCGEIHRVTILCDKFSG 181
Query: 151 DPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192
P +A++EFA + A+AA+ L ++ ++VLP +T
Sbjct: 182 HPKG---YAYIEFATKSSAQAAVELDDSVFRGRVIKVLPKRT 220
>gi|395503056|ref|XP_003755889.1| PREDICTED: polyadenylate-binding protein 2 [Sarcophilus harrisii]
Length = 333
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 199 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKDSVRT 255
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
++ L ++ ++V+P +T
Sbjct: 256 SMALDDSLFRGRQIKVIPKRT 276
>gi|359067954|ref|XP_002707879.2| PREDICTED: LOW QUALITY PROTEIN: eLAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)-like [Bos
taurus]
Length = 346
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 24/129 (18%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTM 136
Query: 226 PQAEVKQFF 234
Q E++Q F
Sbjct: 137 TQKELEQLF 145
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDENLKELF 211
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|115511032|ref|NP_004423.2| ELAV-like protein 2 isoform a [Homo sapiens]
gi|197097794|ref|NP_001127414.1| ELAV-like protein 2 [Pongo abelii]
gi|149736900|ref|XP_001498035.1| PREDICTED: ELAV-like protein 2 isoform 1 [Equus caballus]
gi|291383145|ref|XP_002708096.1| PREDICTED: ELAV-like 2-like isoform 1 [Oryctolagus cuniculus]
gi|296190038|ref|XP_002743026.1| PREDICTED: ELAV-like protein 2 isoform 2 [Callithrix jacchus]
gi|311245695|ref|XP_001924617.2| PREDICTED: ELAV-like protein 2 isoform 1 [Sus scrofa]
gi|332229737|ref|XP_003264044.1| PREDICTED: ELAV-like protein 2 isoform 2 [Nomascus leucogenys]
gi|332831660|ref|XP_520515.3| PREDICTED: ELAV-like protein 2 isoform 3 [Pan troglodytes]
gi|345777488|ref|XP_865062.2| PREDICTED: ELAV-like protein 2 isoform 3 [Canis lupus familiaris]
gi|402897261|ref|XP_003911687.1| PREDICTED: ELAV-like protein 2 isoform 1 [Papio anubis]
gi|403272638|ref|XP_003928159.1| PREDICTED: ELAV-like protein 2 isoform 1 [Saimiri boliviensis
boliviensis]
gi|426220513|ref|XP_004004459.1| PREDICTED: ELAV-like protein 2 isoform 1 [Ovis aries]
gi|426361461|ref|XP_004047929.1| PREDICTED: ELAV-like protein 2 isoform 1 [Gorilla gorilla gorilla]
gi|75070704|sp|Q5R9Z6.1|ELAV2_PONAB RecName: Full=ELAV-like protein 2
gi|93141258|sp|Q12926.2|ELAV2_HUMAN RecName: Full=ELAV-like protein 2; AltName: Full=ELAV-like neuronal
protein 1; AltName: Full=Hu-antigen B; Short=HuB;
AltName: Full=Nervous system-specific RNA-binding
protein Hel-N1
gi|55729364|emb|CAH91414.1| hypothetical protein [Pongo abelii]
gi|119578989|gb|EAW58585.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_d [Homo sapiens]
gi|261860488|dbj|BAI46766.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like protein 2
[synthetic construct]
gi|380784355|gb|AFE64053.1| ELAV-like protein 2 isoform a [Macaca mulatta]
Length = 359
Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 24/129 (18%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTM 136
Query: 226 PQAEVKQFF 234
Q E++Q F
Sbjct: 137 TQKELEQLF 145
>gi|9294658|dbj|BAB03007.1| unnamed protein product [Arabidopsis thaliana]
Length = 1006
Score = 44.3 bits (103), Expect = 0.047, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN 174
+++ + VS++ ++T E+L LFS CG VVDC + H A++E+++ A AAL
Sbjct: 349 LKKFLQVSNLSPSLTTEQLRQLFSFCGTVVDCSITDSKH----IAYIEYSNSEEATAALA 404
Query: 175 LGGT 178
L T
Sbjct: 405 LNNT 408
>gi|386766659|ref|NP_001163756.2| CG34354, isoform E [Drosophila melanogaster]
gi|386766661|ref|NP_001163755.2| CG34354, isoform D [Drosophila melanogaster]
gi|383292995|gb|ACZ95050.2| CG34354, isoform E [Drosophila melanogaster]
gi|383292996|gb|ACZ95049.2| CG34354, isoform D [Drosophila melanogaster]
Length = 431
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALN-L 175
++V D+ I ++L F+ G++ DCRV DP ++ + FV F + A A+ +
Sbjct: 98 IFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAM 157
Query: 176 GGTMLGY------YPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNID 222
G LG + R P+ A + P ++ + TVYC I+
Sbjct: 158 NGQWLGSRSIRTNWATRKPPATKADMNAKPLTFDEVYNQSSPTNCTVYCGGIN 210
>gi|62739311|gb|AAH94189.1| Elavl2-a protein [Xenopus laevis]
Length = 359
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 18/126 (14%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 33 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 91
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 92 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 137
Query: 229 EVKQFF 234
E++Q F
Sbjct: 138 ELEQLF 143
>gi|17508585|ref|NP_493022.1| Protein R09B3.2 [Caenorhabditis elegans]
gi|3879015|emb|CAB03236.1| Protein R09B3.2 [Caenorhabditis elegans]
Length = 83
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVC-----GDPHSVLRFAFVEFADEHGA-RA 171
+VYV + TEE L FSS GQ+ + R+ G P FAF+EFA+E A RA
Sbjct: 6 SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRG---FAFIEFAEEGSAQRA 62
Query: 172 ALNLGGTMLGYYPVRV 187
+ G P+RV
Sbjct: 63 VEQMNGAEFNGRPLRV 78
>gi|283945529|ref|NP_001164666.1| ELAV-like protein 2 isoform b [Homo sapiens]
gi|283945537|ref|NP_001164668.1| ELAV-like protein 2 isoform b [Homo sapiens]
gi|386781798|ref|NP_001247929.1| ELAV-like protein 2 [Macaca mulatta]
gi|73971067|ref|XP_865045.1| PREDICTED: ELAV-like protein 2 isoform 2 [Canis lupus familiaris]
gi|296190040|ref|XP_002743027.1| PREDICTED: ELAV-like protein 2 isoform 3 [Callithrix jacchus]
gi|296190042|ref|XP_002743028.1| PREDICTED: ELAV-like protein 2 isoform 4 [Callithrix jacchus]
gi|311245697|ref|XP_003121925.1| PREDICTED: ELAV-like protein 2 isoform 2 [Sus scrofa]
gi|332229735|ref|XP_003264043.1| PREDICTED: ELAV-like protein 2 isoform 1 [Nomascus leucogenys]
gi|332229739|ref|XP_003264045.1| PREDICTED: ELAV-like protein 2 isoform 3 [Nomascus leucogenys]
gi|332831658|ref|XP_003312071.1| PREDICTED: ELAV-like protein 2 isoform 1 [Pan troglodytes]
gi|332831662|ref|XP_003312072.1| PREDICTED: ELAV-like protein 2 isoform 2 [Pan troglodytes]
gi|338719470|ref|XP_003364010.1| PREDICTED: ELAV-like protein 2 isoform 2 [Equus caballus]
gi|344271095|ref|XP_003407377.1| PREDICTED: ELAV-like protein 2-like [Loxodonta africana]
gi|402897263|ref|XP_003911688.1| PREDICTED: ELAV-like protein 2 isoform 2 [Papio anubis]
gi|402897265|ref|XP_003911689.1| PREDICTED: ELAV-like protein 2 isoform 3 [Papio anubis]
gi|402897267|ref|XP_003911690.1| PREDICTED: ELAV-like protein 2 isoform 4 [Papio anubis]
gi|403272640|ref|XP_003928160.1| PREDICTED: ELAV-like protein 2 isoform 2 [Saimiri boliviensis
boliviensis]
gi|403272642|ref|XP_003928161.1| PREDICTED: ELAV-like protein 2 isoform 3 [Saimiri boliviensis
boliviensis]
gi|410042502|ref|XP_003951453.1| PREDICTED: ELAV-like protein 2 [Pan troglodytes]
gi|410978370|ref|XP_003995566.1| PREDICTED: ELAV-like protein 2-like isoform 1 [Felis catus]
gi|426220515|ref|XP_004004460.1| PREDICTED: ELAV-like protein 2 isoform 2 [Ovis aries]
gi|426220517|ref|XP_004004461.1| PREDICTED: ELAV-like protein 2 isoform 3 [Ovis aries]
gi|426361463|ref|XP_004047930.1| PREDICTED: ELAV-like protein 2 isoform 2 [Gorilla gorilla gorilla]
gi|426361465|ref|XP_004047931.1| PREDICTED: ELAV-like protein 2 isoform 3 [Gorilla gorilla gorilla]
gi|426361467|ref|XP_004047932.1| PREDICTED: ELAV-like protein 2 isoform 4 [Gorilla gorilla gorilla]
gi|441622584|ref|XP_004088846.1| PREDICTED: ELAV-like protein 2 [Nomascus leucogenys]
gi|21265137|gb|AAH30692.1| ELAVL2 protein [Homo sapiens]
gi|119578985|gb|EAW58581.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_a [Homo sapiens]
gi|119578986|gb|EAW58582.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_a [Homo sapiens]
gi|123981428|gb|ABM82543.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [synthetic construct]
gi|123996267|gb|ABM85735.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [synthetic construct]
gi|157928304|gb|ABW03448.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [synthetic construct]
gi|384945702|gb|AFI36456.1| ELAV-like protein 2 isoform b [Macaca mulatta]
gi|384945704|gb|AFI36457.1| ELAV-like protein 2 isoform b [Macaca mulatta]
gi|387541444|gb|AFJ71349.1| ELAV-like protein 2 isoform b [Macaca mulatta]
Length = 346
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 24/129 (18%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTM 136
Query: 226 PQAEVKQFF 234
Q E++Q F
Sbjct: 137 TQKELEQLF 145
>gi|348587078|ref|XP_003479295.1| PREDICTED: ELAV-like protein 2 isoform 2 [Cavia porcellus]
Length = 347
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 24/129 (18%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTM 136
Query: 226 PQAEVKQFF 234
Q E++Q F
Sbjct: 137 TQKELEQLF 145
>gi|332208761|ref|XP_003253477.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 590
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 16/122 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ +R++ +++ +++ +I + L FS+ G ++ C+V D H F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGF 142
Query: 161 VEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCT 219
V F A+ A+N + G +L V V F R E E E+ +R + T
Sbjct: 143 VHFETHEAAQQAINTMNGMLLNDRKVFV-----------GHFKSRREREAELGARALEFT 191
Query: 220 NI 221
NI
Sbjct: 192 NI 193
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D + L +A++ F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSK 191
+ ML P+R++ S+
Sbjct: 72 MNFEMLKGQPIRIMWSQ 88
>gi|330791359|ref|XP_003283761.1| hypothetical protein DICPUDRAFT_74732 [Dictyostelium purpureum]
gi|325086384|gb|EGC39775.1| hypothetical protein DICPUDRAFT_74732 [Dictyostelium purpureum]
Length = 630
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGA 169
E+S +RTV+VS I QN+ ++ L LFS G+V+ ++ D + +VEFA++
Sbjct: 203 EESDQRTVFVSKISQNVVDKDLYDLFSKAGKVLGVQLIVDKVTKKNKGVGYVEFAEKVMV 262
Query: 170 RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLP 203
A+ L G+ L + V AI P T P
Sbjct: 263 ERAVALSGSYLDGQAITV----HAIQPEKKTTKP 292
>gi|320166285|gb|EFW43184.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 683
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLG 176
TVYV I +T L FS+ G + C+ + FAF+EF D A A+ +L
Sbjct: 138 TVYVGSIAPTVTSSALTEFFSTVGPIKHCQQFS--QNGNSFAFIEFGDHQSATLAVGSLN 195
Query: 177 GTMLGYYPVRV 187
G +LG P+RV
Sbjct: 196 GALLGGQPIRV 206
>gi|119578990|gb|EAW58586.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_e [Homo sapiens]
Length = 374
Score = 44.3 bits (103), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 18/126 (14%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 49 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 107
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 108 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 153
Query: 229 EVKQFF 234
E++Q F
Sbjct: 154 ELEQLF 159
>gi|449446975|ref|XP_004141245.1| PREDICTED: polyadenylate-binding protein RBP47C-like [Cucumis
sativus]
gi|449498692|ref|XP_004160607.1| PREDICTED: polyadenylate-binding protein RBP47C-like [Cucumis
sativus]
Length = 426
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 15/81 (18%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV-----CGDPHSVLRFAFVEFADEH 167
DS T++V +D N+T+E L FS G++V ++ CG FV+FA+ +
Sbjct: 288 DSANTTIFVGGLDPNVTDEDLRQPFSQYGEIVSVKIPVGKGCG---------FVQFANRN 338
Query: 168 GARAALN-LGGTMLGYYPVRV 187
A AL L GT++G VR+
Sbjct: 339 DAEEALQKLNGTVIGKQTVRL 359
>gi|46592818|ref|NP_997568.1| ELAV-like protein 2 isoform 1 [Mus musculus]
gi|29294744|gb|AAH49125.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Mus musculus]
gi|34849537|gb|AAH58393.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Mus musculus]
Length = 373
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 18/126 (14%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 49 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 107
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 108 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 153
Query: 229 EVKQFF 234
E++Q F
Sbjct: 154 ELEQLF 159
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDENLKELF 211
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|126334002|ref|XP_001364932.1| PREDICTED: ELAV-like protein 2-like isoform 2 [Monodelphis
domestica]
Length = 347
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 24/129 (18%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTM 136
Query: 226 PQAEVKQFF 234
Q E++Q F
Sbjct: 137 TQKELEQLF 145
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDENLKELF 211
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|50306049|ref|XP_452986.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690315|sp|Q6CSV3.1|PABP_KLULA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49642119|emb|CAH01837.1| KLLA0C17600p [Kluyveromyces lactis]
Length = 592
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D NITE L +FS G + RVC D + L +A+V + D E G +A
Sbjct: 51 SLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQE 110
Query: 175 LGGTMLGYYPVRVLPSK 191
L + P R++ S+
Sbjct: 111 LNYAEINGRPCRIMWSE 127
Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 18/139 (12%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R ++R+ ++R+ +++ ++ I + L FS+ G+V+ C+V D + R F
Sbjct: 122 RIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFG 181
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRV---LPSKTAILPVNPTFLPRSEDEREMCSRT 215
FV F +E A+ A+ + G ++ V V +P K I + +E +
Sbjct: 182 FVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKL---------EEAKANFTN 232
Query: 216 VYCTNIDKKVPQAEVKQFF 234
+Y NID + E +Q F
Sbjct: 233 IYVKNIDVETTDEEFEQLF 251
>gi|15020254|gb|AAK74152.1| ELAV-like neuronal protein-3 [Mus musculus]
Length = 348
Score = 44.3 bits (103), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 24/129 (18%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTM 136
Query: 226 PQAEVKQFF 234
Q E++Q F
Sbjct: 137 TQKELEQLF 145
>gi|74189486|dbj|BAE22747.1| unnamed protein product [Mus musculus]
Length = 590
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 12 RIMWSQRDPSLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 71
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 72 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 120
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 121 NVYIKNFGEEVDDGNLKELF 140
>gi|348516557|ref|XP_003445805.1| PREDICTED: polyadenylate-binding protein 2-like [Oreochromis
niloticus]
Length = 240
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFA 164
+R D+ R++YV ++D T + L F+ CG V + C R G P FA++EF+
Sbjct: 53 ERIDADNRSIYVGNVDYGATADELEIHFNGCGPVNRVTILCDRFSGHPKG---FAYIEFS 109
Query: 165 DEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPT 200
D ++A+ L T+ ++V+P +T + ++ T
Sbjct: 110 DRDSVQSAIGLHETLFRGRVLKVMPKRTNMPGISTT 145
>gi|334312764|ref|XP_003339775.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
1-like [Monodelphis domestica]
Length = 614
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 19/128 (14%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ +R++ +++ ++D +I + L FS+ G ++ C+V D +
Sbjct: 77 IKGRPIRIMWSQRDPGLRKSGIGNIFIKNLDDSIDNKALYDTFSTFGNILSCKVVCDENG 136
Query: 155 VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
F FV F A A+N + G +L V V F R E E E+ +
Sbjct: 137 SRGFGFVHFETHEAANQAINTMNGMLLNDRKVFV-----------GHFKSRQEREAELGA 185
Query: 214 RTVYCTNI 221
R + TNI
Sbjct: 186 RALEFTNI 193
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS+ G ++ RVC D + L +A++ F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSAAGPIMSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSK 191
+ ++ P+R++ S+
Sbjct: 72 MNFEVIKGRPIRIMWSQ 88
>gi|327264130|ref|XP_003216869.1| PREDICTED: ELAV-like protein 3-like [Anolis carolinensis]
Length = 386
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D + A
Sbjct: 61 DDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDSNDAD 120
Query: 171 AALN-LGGTMLGYYPVRVL---PSKTAILPVN--PTFLPRSEDEREM 211
A+N L G L ++V PS +I N + LP++ ++EM
Sbjct: 121 KAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEM 167
>gi|161078704|ref|NP_001097953.1| CG34354, isoform A [Drosophila melanogaster]
gi|158030423|gb|ABW08789.1| CG34354, isoform A [Drosophila melanogaster]
Length = 525
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALN-L 175
++V D+ I ++L F+ G++ DCRV DP ++ + FV F + A A+ +
Sbjct: 98 IFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAM 157
Query: 176 GGTMLGY------YPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNID 222
G LG + R P+ A + P ++ + TVYC I+
Sbjct: 158 NGQWLGSRSIRTNWATRKPPATKADMNAKPLTFDEVYNQSSPTNCTVYCGGIN 210
>gi|117557982|gb|AAI27339.1| ELAV (embryonic lethal, abnormal vision)-like 2 (Hu antigen B)
[Xenopus (Silurana) tropicalis]
Length = 346
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 24/129 (18%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 34 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 92
Query: 170 RAALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 93 EKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTM 135
Query: 226 PQAEVKQFF 234
Q E++Q F
Sbjct: 136 TQKELEQLF 144
>gi|219670337|ref|YP_002460772.1| RNP-1 like RNA-binding protein [Desulfitobacterium hafniense DCB-2]
gi|219540597|gb|ACL22336.1| RNP-1 like RNA-binding protein [Desulfitobacterium hafniense DCB-2]
Length = 83
Score = 44.3 bits (103), Expect = 0.050, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALNL 175
T+YV ++ N T E L F GQV+ R+ D + F FVE DE AR A +L
Sbjct: 3 TLYVGNLPWNTTSEDLNSFFGQYGQVISSRIITDRETGRSRGFGFVEVEDEDAARMAEDL 62
Query: 176 GGTMLGYYPVRV 187
G G P+ V
Sbjct: 63 NGKDFGGRPLTV 74
>gi|395514484|ref|XP_003761447.1| PREDICTED: ELAV-like protein 2-like isoform 2 [Sarcophilus
harrisii]
Length = 347
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 24/129 (18%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTM 136
Query: 226 PQAEVKQFF 234
Q E++Q F
Sbjct: 137 TQKELEQLF 145
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|46592826|ref|NP_997569.1| ELAV-like protein 2 isoform 3 [Mus musculus]
gi|49114392|gb|AAH46598.2| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Mus musculus]
Length = 347
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 24/129 (18%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTM 136
Query: 226 PQAEVKQFF 234
Q E++Q F
Sbjct: 137 TQKELEQLF 145
>gi|397521309|ref|XP_003830739.1| PREDICTED: ELAV-like protein 2 isoform 2 [Pan paniscus]
gi|397521311|ref|XP_003830740.1| PREDICTED: ELAV-like protein 2 isoform 3 [Pan paniscus]
gi|397521313|ref|XP_003830741.1| PREDICTED: ELAV-like protein 2 isoform 4 [Pan paniscus]
Length = 346
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 24/129 (18%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTM 136
Query: 226 PQAEVKQFF 234
Q E++Q F
Sbjct: 137 TQKELEQLF 145
>gi|327263683|ref|XP_003216647.1| PREDICTED: ELAV-like protein 2-like isoform 1 [Anolis carolinensis]
Length = 397
Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 18/127 (14%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 73 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 131
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 132 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 177
Query: 229 EVKQFFE 235
E++Q F
Sbjct: 178 ELEQLFS 184
>gi|225681483|gb|EEH19767.1| RNA-binding protein Vip1 [Paracoccidioides brasiliensis Pb03]
Length = 261
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV---CGDPHSVLRFAFVEFADEHGAR 170
S TV+VSDI TE+ + FS CG++ + G+P + A V F E A+
Sbjct: 2 SSHTTVHVSDISPKTTEKEVRDFFSFCGKITSLSISPSSGEP-DAPQSATVTFEKEAAAK 60
Query: 171 AALNLGGTMLGYYPVRV 187
AL L T LG V+V
Sbjct: 61 TALLLDNTQLGQSSVKV 77
>gi|119578988|gb|EAW58584.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B), isoform CRA_c [Homo sapiens]
Length = 360
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 24/129 (18%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 49 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 107
Query: 170 RAALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 108 EKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTM 150
Query: 226 PQAEVKQFF 234
Q E++Q F
Sbjct: 151 TQKELEQLF 159
>gi|15020256|gb|AAK74153.1| ELAV-like neuronal protein-2 [Mus musculus]
Length = 347
Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 24/129 (18%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTM 136
Query: 226 PQAEVKQFF 234
Q E++Q F
Sbjct: 137 TQKELEQLF 145
>gi|406859894|gb|EKD12956.1| RNA recognition domain-containing protein [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 1039
Score = 44.3 bits (103), Expect = 0.052, Method: Composition-based stats.
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 10/105 (9%)
Query: 108 RAQREDSVR--RTVYVSDIDQNITEERLAGLFSSCGQV----VDCRVCGDPHSVLRFAFV 161
R +R+ ++ R ++V+ ID +IT + L LFS G+V + +V G+ AFV
Sbjct: 733 RQKRQGALAEGREIHVTSIDPSITPDELEKLFSKYGKVERVNLLTKVSGESKGA---AFV 789
Query: 162 EFADEHGARAALNLGGTMLGYYPVRV-LPSKTAILPVNPTFLPRS 205
FA + GA AAL+L T L + V + T P TF RS
Sbjct: 790 SFATKEGAAAALDLDKTKLKSRVLNVEMAGATNFKPTATTFSKRS 834
>gi|17505625|ref|NP_492504.1| Protein PABP-2 [Caenorhabditis elegans]
gi|3874370|emb|CAB02750.1| Protein PABP-2 [Caenorhabditis elegans]
Length = 205
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFA 164
++ ++ ++VYV ++D T E + F CG V + C R G P FA+VEF
Sbjct: 71 EKAEADAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKG---FAYVEFT 127
Query: 165 DEHGARAALNLGGTMLGYYPVRVLPSKT 192
++ G + AL + ++L ++V P +T
Sbjct: 128 EKEGMQNALAMTDSLLRGRQIKVDPKRT 155
>gi|302792090|ref|XP_002977811.1| hypothetical protein SELMODRAFT_232989 [Selaginella moellendorffii]
gi|300154514|gb|EFJ21149.1| hypothetical protein SELMODRAFT_232989 [Selaginella moellendorffii]
Length = 455
Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
D T++V +D NITEE + FS G++V ++ AFV++A + A A
Sbjct: 262 DPTNTTIFVGGLDLNITEEEVKQTFSQIGELVSVKIPPGKGC----AFVQYAQRNSAEDA 317
Query: 173 LN-LGGTMLGYYPVRV----LPSKTAILPVNP 199
L L GT++G +R+ P+ T P +P
Sbjct: 318 LQRLHGTVIGQQAIRLSWGRSPTSTKQAPTSP 349
>gi|340718898|ref|XP_003397899.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Bombus
terrestris]
Length = 520
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Query: 90 RRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV- 148
R R F +G L R E+ RTV+ + Q I L FSS G+V D R+
Sbjct: 134 RARLPFGKGVSPLGIRNDELTPEERDARTVFCMQLSQRIRARDLEEFFSSVGKVQDVRLI 193
Query: 149 -CGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRV 187
C A+VEF D AL L G L P+ V
Sbjct: 194 TCNKTRRFKGIAYVEFKDPESVTLALGLSGQKLLGVPIVV 233
>gi|281349018|gb|EFB24602.1| hypothetical protein PANDA_005072 [Ailuropoda melanoleuca]
gi|351703220|gb|EHB06139.1| ELAV-like protein 2 [Heterocephalus glaber]
gi|355567720|gb|EHH24061.1| Hu-antigen B [Macaca mulatta]
gi|355753294|gb|EHH57340.1| Hu-antigen B [Macaca fascicularis]
gi|431914785|gb|ELK15810.1| ELAV-like protein 2 [Pteropus alecto]
Length = 387
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 18/127 (14%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 63 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 121
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 122 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 167
Query: 229 EVKQFFE 235
E++Q F
Sbjct: 168 ELEQLFS 174
>gi|47219575|emb|CAG02281.1| unnamed protein product [Tetraodon nigroviridis]
Length = 351
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 18/127 (14%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 2 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDA 60
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 61 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 106
Query: 229 EVKQFFE 235
E++Q F
Sbjct: 107 ELEQLFS 113
>gi|226288621|gb|EEH44133.1| actin cytoskeleton protein (VIP1) [Paracoccidioides brasiliensis
Pb18]
Length = 261
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV---CGDPHSVLRFAFVEFADEHGAR 170
S TV+VSDI TE+ + FS CG++ + G+P + A V F E A+
Sbjct: 2 SSHTTVHVSDISPKTTEKEVRDFFSFCGKITSLSISPSSGEP-DAPQSATVTFEKEAAAK 60
Query: 171 AALNLGGTMLGYYPVRV 187
AL L T LG V+V
Sbjct: 61 TALLLDNTQLGQSSVKV 77
>gi|167999063|ref|XP_001752237.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696632|gb|EDQ82970.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 156
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Query: 108 RAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADE 166
+A RE++ R+V+V ++D + T E + F SCG V + D + FA+VEF +
Sbjct: 39 QANREEADARSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFLEV 98
Query: 167 HGARAALNLGGTMLGYYPVRVLPSKTAILP 196
+ A+ L + L P++V+ SK +P
Sbjct: 99 EAVQNAILLSESELHNRPLKVVTSKRTNVP 128
>gi|156363387|ref|XP_001626026.1| predicted protein [Nematostella vectensis]
gi|156212886|gb|EDO33926.1| predicted protein [Nematostella vectensis]
Length = 468
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
E+ +RTV+ + +NI L FS GQV D R+ D +S A++EF D+
Sbjct: 114 EEKDQRTVFCMQLARNIRPRDLEEFFSKVGQVSDVRIISDRNSRRSKGIAYIEFTDKSAV 173
Query: 170 RAALNLGGTMLGYYPVRVL 188
A+ L G L P+ V+
Sbjct: 174 PLAIGLSGQKLLGAPIMVM 192
>gi|41054151|ref|NP_956133.1| polyadenylate-binding protein 1-like [Danio rerio]
gi|27881953|gb|AAH44513.1| Zgc:55855 [Danio rerio]
gi|182890236|gb|AAI65470.1| Zgc:55855 protein [Danio rerio]
Length = 620
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 19/128 (14%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ +R++ +++ ++D++I + L FS+ G ++ C+V D +
Sbjct: 77 IKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDENG 136
Query: 155 VLRFAFVEFADEHGA-RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
+ FV F + A RA + G +L V V F R E E EM +
Sbjct: 137 SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFV-----------GHFKSRKEREAEMGA 185
Query: 214 RTVYCTNI 221
+ V TN+
Sbjct: 186 KAVEFTNV 193
Score = 40.4 bits (93), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS GQ++ RVC D L +A++ F A AL+
Sbjct: 12 SLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDT 71
Query: 175 LGGTMLGYYPVRVLPSK 191
+ ++ P+R++ S+
Sbjct: 72 MNYEVIKGRPIRIMWSQ 88
>gi|444321552|ref|XP_004181432.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
gi|387514476|emb|CCH61913.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
Length = 577
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGAR 170
++V ++YV ++D +++E L +FS G V RVC D + L +A+V F D +
Sbjct: 39 ENVTASLYVGELDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGK 98
Query: 171 AAL-NLGGTMLGYYPVRVLPSK 191
A+ L T + P R++ S+
Sbjct: 99 TAIEKLNYTAIKGRPCRIMWSQ 120
>gi|367000405|ref|XP_003684938.1| hypothetical protein TPHA_0C03520 [Tetrapisispora phaffii CBS 4417]
gi|357523235|emb|CCE62504.1| hypothetical protein TPHA_0C03520 [Tetrapisispora phaffii CBS 4417]
Length = 442
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 12/101 (11%)
Query: 102 LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFV 161
+ A RE S + +YV ++D++I EE L F G + + +V D ++ + +AFV
Sbjct: 65 VPANAINGGRETS-DKILYVGNLDKSINEETLKQYFQIGGPISNVKVINDKNNSVNYAFV 123
Query: 162 EFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTF 201
E+ H A A NL G + +T +L +N F
Sbjct: 124 EYLQHHDADVAFKNLNGKTI----------ETKVLKINWAF 154
>gi|335289034|ref|XP_003126854.2| PREDICTED: embryonic polyadenylate-binding protein 2-like [Sus
scrofa]
Length = 285
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAF 160
+ Q+ ++ R+VYV ++D T L F+ CG++ + C + G P +A+
Sbjct: 141 GWPQQKVEADHRSVYVGNVDYEGTARELEAYFNHCGEIHRVTILCDKFSGHPKG---YAY 197
Query: 161 VEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192
+EFA E A+AA+ L ++ ++VLP +T
Sbjct: 198 IEFATESSAQAAVELDNSVFRGRVIKVLPKRT 229
>gi|321474916|gb|EFX85880.1| hypothetical protein DAPPUDRAFT_20224 [Daphnia pulex]
Length = 346
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 9/135 (6%)
Query: 109 AQREDSVRR-TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFAD 165
A ++D+ + ++V D+ I L F++ G++ DCRV DP ++ + FV F
Sbjct: 77 APKQDTSKHFHIFVGDLSPEIETHTLRDAFAAFGEISDCRVVRDPQTLKSKGYGFVSFVK 136
Query: 166 EHGARAAL-NLGGTMLGYYPVRV-LPSKTAILPVNPTFLPRSEDE----REMCSRTVYCT 219
+ A A+ + G LG +R ++ P + P S +E + TVYC
Sbjct: 137 KSDAENAIAGMNGQWLGTRAIRTNWATRKPPAPKDAGSKPMSYEEVFGQSSSTNCTVYCG 196
Query: 220 NIDKKVPQAEVKQFF 234
N+ + + +++ F
Sbjct: 197 NLAQGSTEEALQKIF 211
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 120 YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEH 167
YV ++D ++TEE + LF G V C++ +P + FVEFA+ H
Sbjct: 1 YVGNLDPSVTEELIMVLFGQIGTVKGCKIIHEPGHE-PYCFVEFAEHH 47
>gi|348041233|ref|NP_775431.2| ELAV-like protein 2 [Rattus norvegicus]
gi|149044491|gb|EDL97750.1| rCG53485, isoform CRA_b [Rattus norvegicus]
Length = 388
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 18/127 (14%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 64 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 122
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 123 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 168
Query: 229 EVKQFFE 235
E++Q F
Sbjct: 169 ELEQLFS 175
>gi|354544353|emb|CCE41076.1| hypothetical protein CPAR2_300650 [Candida parapsilosis]
Length = 217
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 103 SGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCG-----QVVDCRVCGDPHSVLR 157
S +R DS R++Y+ ++D T L FS G ++ ++ G P
Sbjct: 80 SAEQLAEERRDSDARSIYIGNVDYQATPLELQEHFSPAGIVNRVTIMTNKITGQPKG--- 136
Query: 158 FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVN 198
FA++EF+D G AA+ L ++ ++VLP +T I +N
Sbjct: 137 FAYMEFSDVEGVNAAVKELDDSVFRDRRLKVLPKRTNIPGIN 178
>gi|449476847|ref|XP_002193793.2| PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3
[Taeniopygia guttata]
Length = 928
Score = 44.3 bits (103), Expect = 0.055, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 118 TVYVSDIDQNITE--ERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN 174
TV+VS++ + E +L LF SCG+VV+ R + R + +V+F +E AR AL
Sbjct: 670 TVFVSNLSYTMAEPEAKLRELFGSCGEVVEIRAVFNNKGTFRGYCYVQFREEEAARQALA 729
Query: 175 LGGTMLGYYPVRVLP 189
L T + P+ V P
Sbjct: 730 LDRTAVEGRPMFVSP 744
>gi|350410161|ref|XP_003488967.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Bombus impatiens]
Length = 508
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Query: 90 RRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV- 148
R R F +G L R E+ RTV+ + Q I L FSS G+V D R+
Sbjct: 122 RARLPFGKGVSPLGIRNDELTPEERDARTVFCMQLSQRIRARDLEEFFSSVGKVQDVRLI 181
Query: 149 -CGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRV 187
C A+VEF D AL L G L P+ V
Sbjct: 182 TCNKTRRFKGIAYVEFKDPESVTLALGLSGQKLLGVPIVV 221
>gi|340718900|ref|XP_003397900.1| PREDICTED: RNA-binding protein 39-like isoform 2 [Bombus
terrestris]
Length = 508
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Query: 90 RRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV- 148
R R F +G L R E+ RTV+ + Q I L FSS G+V D R+
Sbjct: 122 RARLPFGKGVSPLGIRNDELTPEERDARTVFCMQLSQRIRARDLEEFFSSVGKVQDVRLI 181
Query: 149 -CGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRV 187
C A+VEF D AL L G L P+ V
Sbjct: 182 TCNKTRRFKGIAYVEFKDPESVTLALGLSGQKLLGVPIVV 221
>gi|225442420|ref|XP_002277538.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Vitis vinifera]
Length = 630
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 15/122 (12%)
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAAL 173
+ +YV D+D ++E L +FS G +V R+C D S L +A+V F A AL
Sbjct: 28 KAALYVGDLDPEVSEVELVDVFSGMGPLVSVRLCRDSLSGKSLCYAYVNFFHPSDASKAL 87
Query: 174 N-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
L T L P+R++ S LP R+ ++ N+D + A ++
Sbjct: 88 ACLNHTKLMGKPMRIMWSHRDPLP------------RKTGLANLFVKNLDPSINSASLQD 135
Query: 233 FF 234
F
Sbjct: 136 IF 137
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-NLG 176
+YV ++D ++ +++L FSSCGQ+ +V + + F FV F+ A+ AL L
Sbjct: 311 LYVKNLDASVDDDKLQEHFSSCGQITSAKVMRHDSGLSKGFGFVCFSTSEEAQKALTTLN 370
Query: 177 GTML 180
GT+L
Sbjct: 371 GTLL 374
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 101 RLSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH 153
+L G+ R + R+ R+T ++V ++D +I L +F G ++ C+V +
Sbjct: 94 KLMGKPMRIMWSHRDPLPRKTGLANLFVKNLDPSINSASLQDIFCKFGNILSCKVAEENG 153
Query: 154 SVLRFAFVEFADEHGARAALN-LGGTML 180
F FV+F + A AALN L TML
Sbjct: 154 KSKCFGFVQFDSDDSATAALNALNDTML 181
>gi|440909067|gb|ELR59018.1| ELAV-like protein 2 [Bos grunniens mutus]
Length = 388
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 18/127 (14%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 63 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 121
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 122 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 167
Query: 229 EVKQFFE 235
E++Q F
Sbjct: 168 ELEQLFS 174
>gi|126277431|ref|XP_001369327.1| PREDICTED: polyadenylate-binding protein 2-like [Monodelphis
domestica]
Length = 306
Score = 44.3 bits (103), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 172 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKDSVRT 228
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
++ L ++ ++V+P +T
Sbjct: 229 SMALDDSLFRGRQIKVIPKRT 249
>gi|297845300|ref|XP_002890531.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
gi|297336373|gb|EFH66790.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
Length = 659
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 105 RAFRAQR----EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R F +R E S +Y+ ++D ++ +E+L +FS G V +V +P + R F
Sbjct: 316 RKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGLSRGFG 375
Query: 160 FVEFAD-EHGARAALNLGGTMLGYYPVRV 187
FV +++ E RA + G M+G P+ +
Sbjct: 376 FVAYSNPEEALRALSEMNGKMIGKKPLYI 404
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGA-RAALNL 175
++Y D+D +TE L LF VV RVC D + L +A++ F++ + A RA L
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 176 GGTMLGYYPVRVL 188
T L P+R++
Sbjct: 110 NYTPLFERPIRIM 122
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 67/141 (47%), Gaps = 22/141 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ S R + +++ ++D +I + L FSS G ++ C+V D + +
Sbjct: 120 RIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYG 179
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV+F E A+AA++ L G ++ V V F+ R E R+ + T
Sbjct: 180 FVQFEKEESAQAAIDKLNGMLMNDKQVFV-----------GHFIRRQERARDENTPTPRF 228
Query: 216 --VYCTNIDKKVPQAEVKQFF 234
VY N+ K++ + E+++ F
Sbjct: 229 TNVYVKNLPKEIGEDELRKTF 249
>gi|395514482|ref|XP_003761446.1| PREDICTED: ELAV-like protein 2-like isoform 1 [Sarcophilus
harrisii]
Length = 389
Score = 44.3 bits (103), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 18/127 (14%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 64 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 122
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 123 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 168
Query: 229 EVKQFFE 235
E++Q F
Sbjct: 169 ELEQLFS 175
>gi|380012525|ref|XP_003690330.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 39-like [Apis
florea]
Length = 506
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Query: 90 RRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV- 148
R R F +G L R E+ RTV+ + Q I L FSS G+V D R+
Sbjct: 120 RARLPFGKGVSPLGIRNDELTPEERDARTVFCMQLSQRIRARDLEEFFSSVGKVQDVRLI 179
Query: 149 -CGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRV 187
C A+VEF D AL L G L P+ V
Sbjct: 180 TCNKTRRFKGIAYVEFKDPESVTLALGLSGQKLLGVPIVV 219
>gi|119596296|gb|EAW75890.1| hCG2019100, isoform CRA_d [Homo sapiens]
Length = 639
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 16/122 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ +R++ +++ +++ +I + L FS+ G ++ C+V D H F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGF 142
Query: 161 VEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCT 219
V F A+ A+N + G +L V V F R E E E+ +R + T
Sbjct: 143 VHFETHEAAQQAINTMNGMLLNDRKVFV-----------GHFKSRREREAELGARALEFT 191
Query: 220 NI 221
NI
Sbjct: 192 NI 193
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D + L +A++ F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSK 191
+ ML P+R++ S+
Sbjct: 72 MNFEMLKGQPIRIMWSQ 88
Score = 38.1 bits (87), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 105 RAFRAQREDSVRR----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R F ++D +RR +YV ++D +I +++L FS G + +V + F F
Sbjct: 278 RRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGF 337
Query: 161 VEFAD-EHGARAALNLGGTMLGYYPVRV 187
V F+ E +A + G ++G P+ V
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGTKPLYV 365
>gi|449470045|ref|XP_004152729.1| PREDICTED: polyadenylate-binding protein RBP47C-like [Cucumis
sativus]
gi|449496017|ref|XP_004160013.1| PREDICTED: polyadenylate-binding protein RBP47C-like [Cucumis
sativus]
Length = 429
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 15/81 (18%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV-----CGDPHSVLRFAFVEFADEH 167
D T+++ +D N+T+E L LFS G++V ++ CG F++FA+
Sbjct: 294 DFTNTTIFIGGLDPNVTDEDLKQLFSQHGEIVSVKIPVGKGCG---------FIQFANRK 344
Query: 168 GARAALN-LGGTMLGYYPVRV 187
A AL L GT++G VR+
Sbjct: 345 NAEEALQKLNGTVIGKQTVRL 365
>gi|255582384|ref|XP_002531981.1| Protein gar2, putative [Ricinus communis]
gi|223528378|gb|EEF30417.1| Protein gar2, putative [Ricinus communis]
Length = 436
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQV--VDCRVCGDPHSVLRFAFVEFADEHGA 169
EDS + VYV I TEE + F CG + VDC D A + F E A
Sbjct: 177 EDSATK-VYVGGIPYYSTEEDIRSYFEGCGTITEVDCMTFPDSGKFRGIAIIGFKTEAAA 235
Query: 170 RAALNLGGTMLGYYPVRVLPSKT 192
+ AL L G+ +G + +++ P KT
Sbjct: 236 KRALALDGSDMGGFFLKIQPYKT 258
>gi|195338839|ref|XP_002036031.1| GM16278 [Drosophila sechellia]
gi|194129911|gb|EDW51954.1| GM16278 [Drosophila sechellia]
Length = 596
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 8/124 (6%)
Query: 87 NNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDC 146
N+ RRR+ N G +R + + D+ RTV+ + Q + L FSS G+V D
Sbjct: 212 NSPRRRSPAN-GAERTTPTELSPEERDA--RTVFCIQLSQRVRARDLEEFFSSVGKVRDV 268
Query: 147 RV--CGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPS---KTAILPVNPTF 201
R+ C A++EF D AL L G L P+ V + K + P F
Sbjct: 269 RLITCNKTKRFKGIAYIEFDDPESVALALGLSGQRLLGVPIMVQHTQAEKNRLQNATPAF 328
Query: 202 LPRS 205
P+S
Sbjct: 329 QPKS 332
>gi|207080284|ref|NP_001128867.1| DKFZP459N111 protein [Pongo abelii]
gi|390458025|ref|XP_003732040.1| PREDICTED: ELAV-like protein 2 [Callithrix jacchus]
gi|402897269|ref|XP_003911691.1| PREDICTED: ELAV-like protein 2 isoform 5 [Papio anubis]
gi|403272644|ref|XP_003928162.1| PREDICTED: ELAV-like protein 2 isoform 4 [Saimiri boliviensis
boliviensis]
gi|426361469|ref|XP_004047933.1| PREDICTED: ELAV-like protein 2 isoform 5 [Gorilla gorilla gorilla]
gi|55731642|emb|CAH92527.1| hypothetical protein [Pongo abelii]
Length = 389
Score = 44.3 bits (103), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 18/127 (14%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 64 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 122
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 123 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 168
Query: 229 EVKQFFE 235
E++Q F
Sbjct: 169 ELEQLFS 175
>gi|365985359|ref|XP_003669512.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
gi|343768280|emb|CCD24269.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
Length = 585
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALNL 175
++YV D+D +++E L +FS G V RVC D + L +A+V F D + A+
Sbjct: 41 SLYVGDLDPSVSEALLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGKKAIE- 99
Query: 176 GGTMLGYYPVR 186
L Y P++
Sbjct: 100 ---KLNYTPIK 107
>gi|328781105|ref|XP_624668.3| PREDICTED: RNA-binding protein 39-like [Apis mellifera]
Length = 506
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Query: 90 RRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV- 148
R R F +G L R E+ RTV+ + Q I L FSS G+V D R+
Sbjct: 120 RARLPFGKGVSPLGIRNDELTPEERDARTVFCMQLSQRIRARDLEEFFSSVGKVQDVRLI 179
Query: 149 -CGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRV 187
C A+VEF D AL L G L P+ V
Sbjct: 180 TCNKTRRFKGIAYVEFKDPESVTLALGLSGQKLLGVPIVV 219
>gi|213625406|gb|AAI70539.1| Xel-1 protein [Xenopus laevis]
Length = 388
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 18/126 (14%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 62 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 120
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 121 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 166
Query: 229 EVKQFF 234
E++Q F
Sbjct: 167 ELEQLF 172
>gi|452820609|gb|EME27649.1| poly(A) binding / translation initiation factor [Galdieria
sulphuraria]
Length = 784
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 19/110 (17%)
Query: 97 QGRKRLSGRA-FRAQREDSVRRT----------------VYVSDIDQNITEERLAGLFSS 139
+G+ GRA +A+RE +RR +YV ++ ++ EE L FS+
Sbjct: 326 EGKSLYVGRAQKKAEREAELRRKAENKRAEILKKYQGVNLYVRNLPDDMDEEGLRKEFSN 385
Query: 140 CGQVVDCRVCGDPHSVLR-FAFVEFAD-EHGARAALNLGGTMLGYYPVRV 187
G + CRV D V R F FV F+ E +A + G M+G P+ V
Sbjct: 386 FGTLTSCRVMRDDKGVSRGFGFVCFSTPEEATKAVTEMNGKMMGKKPLYV 435
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 21/141 (14%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGA-RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A RA + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQDAADRAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFFE 235
VY N + +K+ F+
Sbjct: 192 NVYIKNFGDDMDDERLKELFD 212
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FS G V+ RVC D L +A+V F+ A AL+
Sbjct: 12 SLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFSQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVVKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 12/135 (8%)
Query: 58 YHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRR 117
Y +H D + +V + N + N ++ R ++ N Q + R F +++ + R
Sbjct: 238 YEKHEDANKAVEDMNGTELNGKTVF----VGRAQKKNERQAELK---RKFEMLKQERISR 290
Query: 118 ----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD-EHGARAA 172
+Y+ ++D I +E+L FS G + +V + F FV F+ E +A
Sbjct: 291 YQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAV 350
Query: 173 LNLGGTMLGYYPVRV 187
+ G ++G P+ V
Sbjct: 351 TEMNGRIVGSKPLYV 365
>gi|350410158|ref|XP_003488966.1| PREDICTED: RNA-binding protein 39-like isoform 1 [Bombus impatiens]
Length = 532
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Query: 90 RRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV- 148
R R F +G L R E+ RTV+ + Q I L FSS G+V D R+
Sbjct: 146 RARLPFGKGVSPLGIRNDELTPEERDARTVFCMQLSQRIRARDLEEFFSSVGKVQDVRLI 205
Query: 149 -CGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRV 187
C A+VEF D AL L G L P+ V
Sbjct: 206 TCNKTRRFKGIAYVEFKDPESVTLALGLSGQKLLGVPIVV 245
>gi|148539604|ref|NP_001091917.1| polyA-binding protein [Strongylocentrotus purpuratus]
gi|126722149|emb|CAM57104.1| polyA-binding protein [Strongylocentrotus purpuratus]
Length = 640
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 73/160 (45%), Gaps = 20/160 (12%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
L GR R +QR+ S+R++ V++ ++D++I + + FS+ G ++ C+V D +
Sbjct: 77 LKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKAMYDTFSAFGHILSCKVVTDENG 136
Query: 155 VLR-FAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
V + + FV F + A A+ + G +L V V F+PR E +M
Sbjct: 137 VNKGYGFVHFETQEAANKAIEKVNGMLLNGKKVYV-----------GYFIPRKERLMQMG 185
Query: 213 SRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIILF 252
TN+ K +V A GG+ ++ I+F
Sbjct: 186 DHQKQFTNVFIKNLAEDVDDGKLAEFGGQYGSILSAKIMF 225
Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 21/114 (18%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNL 175
++YV D+ ++TE L FS+ G ++ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHADVTEALLFEKFSTAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD- 70
Query: 176 GGTM----LGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
TM L P+R++ S+ R R+ V+ N+DK +
Sbjct: 71 --TMNFDTLKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|37681851|gb|AAQ97803.1| poly(A)-binding protein, cytoplasmic 1 [Danio rerio]
Length = 620
Score = 44.3 bits (103), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 19/128 (14%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ +R++ +++ ++D++I + L FS+ G ++ C+V D +
Sbjct: 77 IKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKVVCDENG 136
Query: 155 VLRFAFVEFADEHGA-RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
+ FV F + A RA + G +L V V F R E E EM +
Sbjct: 137 SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFV-----------GHFKSRKEREAEMGA 185
Query: 214 RTVYCTNI 221
+ V TN+
Sbjct: 186 KAVEFTNV 193
Score = 40.4 bits (93), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS GQ++ RVC D L +A++ F A AL+
Sbjct: 12 SLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDT 71
Query: 175 LGGTMLGYYPVRVLPSK 191
+ ++ P+R++ S+
Sbjct: 72 MNYEVIKGRPIRIMWSQ 88
>gi|449458283|ref|XP_004146877.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 212
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFA 164
A +A +E++ R+V+V ++D T E + F SCG V + D + FA+VEF
Sbjct: 75 ASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFL 134
Query: 165 DEHGARAALNLGGTMLGYYPVRVLPSKTAI 194
+ + AL L + L ++VLP +T +
Sbjct: 135 EAEAVQEALVLNESELHGRQLKVLPKRTNV 164
>gi|403305068|ref|XP_003943097.1| PREDICTED: polyadenylate-binding protein 1 [Saimiri boliviensis
boliviensis]
Length = 803
Score = 44.3 bits (103), Expect = 0.059, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ +++ ++D++I + L FS+ G ++ C+V D + + F
Sbjct: 250 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 309
Query: 161 VEFADEHGA-RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR----- 214
V F + A RA + G +L V V F R E E E+ +R
Sbjct: 310 VHFETQEAAERAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGARAKEFT 358
Query: 215 TVYCTNIDKKVPQAEVKQFF 234
VY N + + +K F
Sbjct: 359 NVYIKNFGEDMDDERLKDLF 378
Score = 39.7 bits (91), Expect = 1.3, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 12/124 (9%)
Query: 76 DNKQSAIDNFNNNRRRRNNFNQGRKRLS-------GRAFRAQREDSVRR----TVYVSDI 124
++ Q A+D N GR + R F ++D + R +YV ++
Sbjct: 409 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNL 468
Query: 125 DQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD-EHGARAALNLGGTMLGYY 183
D I +ERL FS G + +V + F FV F+ E +A + G ++
Sbjct: 469 DDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 528
Query: 184 PVRV 187
P+ V
Sbjct: 529 PLYV 532
>gi|325186974|emb|CCA21518.1| polyadenylatebinding protein 2 putative [Albugo laibachii Nc14]
Length = 235
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARAA 172
+VYV +D T E L LF SCG + + C + G P +A++EFA + +A
Sbjct: 112 SVYVGQVDYGSTPEELQALFQSCGTINRVTILCDKFTGQPKG---YAYIEFASKDAVESA 168
Query: 173 LNLGGTMLGYYPVRVLPSKTAILPVNPT 200
L L TM ++V P + + N T
Sbjct: 169 LLLNDTMFRGRQLKVTPKRQNVRGFNYT 196
>gi|226529568|ref|NP_001148500.1| polyadenylate-binding protein 2 [Zea mays]
gi|195619834|gb|ACG31747.1| polyadenylate-binding protein 2 [Zea mays]
gi|413924473|gb|AFW64405.1| polyadenylate-binding protein 2 [Zea mays]
Length = 212
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALNL 175
R+VYV ++D T E + F +CG V + D + FA+VEF ++ + ALNL
Sbjct: 86 RSVYVGNVDYACTPEEVQQHFQACGTVNRVTILTDKFGQPKGFAYVEFLEQEAVQEALNL 145
Query: 176 GGTMLGYYPVRVLPSKTAI 194
+ L ++V P +T +
Sbjct: 146 NESELHGRQIKVAPKRTNV 164
>gi|195577213|ref|XP_002078467.1| GD23448 [Drosophila simulans]
gi|194190476|gb|EDX04052.1| GD23448 [Drosophila simulans]
Length = 608
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 54/125 (43%), Gaps = 8/125 (6%)
Query: 86 NNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVD 145
N+ RRR+ N G +R + + D+ RTV+ + Q + L FSS G+V D
Sbjct: 223 TNSPRRRSPAN-GAERTTPTELSPEERDA--RTVFCIQLSQRVRARDLEEFFSSVGKVRD 279
Query: 146 CRV--CGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPS---KTAILPVNPT 200
R+ C A++EF D AL L G L P+ V + K + P
Sbjct: 280 VRLITCNKTKRFKGIAYIEFDDPESVALALGLSGQRLLGVPIMVQHTQAEKNRLQNATPA 339
Query: 201 FLPRS 205
F P+S
Sbjct: 340 FQPKS 344
>gi|195110141|ref|XP_001999640.1| GI22960 [Drosophila mojavensis]
gi|193916234|gb|EDW15101.1| GI22960 [Drosophila mojavensis]
Length = 475
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
++S +T+YV ++D +++E+ L LF G V C++ +P + +AF+E+++ A
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALFGKMGPVKSCKIIREPGND-PYAFIEYSNYQAAST 60
Query: 172 AL 173
AL
Sbjct: 61 AL 62
Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARA 171
S ++V D+ I E L F+ G++ +CR+ DPH++ +AFV F + A
Sbjct: 92 SSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAEN 151
Query: 172 AL-NLGGTMLG 181
A+ ++ G +G
Sbjct: 152 AIQSMNGQWIG 162
>gi|255569500|ref|XP_002525717.1| conserved hypothetical protein [Ricinus communis]
gi|223535017|gb|EEF36700.1| conserved hypothetical protein [Ricinus communis]
Length = 1034
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 72/177 (40%), Gaps = 28/177 (15%)
Query: 68 VINNNFADDNKQSAI-------DNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVY 120
V+N + D + + ++ + N N GR LSG +R R ++
Sbjct: 443 VVNADIVGDTNSEGVIQVLDSSNGYDQGGKEDNEMNNGRIALSGELEALERRRRRRTEIF 502
Query: 121 VSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV--LRFAFVEFADEHGARAALNLGGT 178
+ + + EE + +F + G++V+ R+ + + RFAF+ ++ A+ AL
Sbjct: 503 IGGLSTDAREEDIRKVFGAVGEIVELRLVTNSKTGKNKRFAFLRYSSAADAKKALE---- 558
Query: 179 MLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235
Y V + + A+ PV + T++ NIDKK +V + +
Sbjct: 559 --KYAKVEICGKQCAVAPVE-------------GNDTIFLGNIDKKWTNGDVIKLLQ 600
>gi|440913528|gb|ELR62976.1| Polyadenylate-binding protein 4, partial [Bos grunniens mutus]
Length = 196
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D +I ++ L FS+ G ++ C+V D + +AF
Sbjct: 74 RIMWSQRDPSLRKSGVGNVFIKNLDNSIDDKALYDTFSAFGNILSCKVVCDENGSKGYAF 133
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCT 219
V F + A A+ + G +L V V F R E E E+ ++ T
Sbjct: 134 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 182
Query: 220 NI 221
N+
Sbjct: 183 NV 184
Score = 38.5 bits (88), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSK 191
+ ++ P+R++ S+
Sbjct: 63 MNFDVIKGKPIRIMWSQ 79
>gi|297802580|ref|XP_002869174.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297315010|gb|EFH45433.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 625
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 68/135 (50%), Gaps = 14/135 (10%)
Query: 66 FSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGR-KRLSGRA--FRAQREDSVRRT---- 118
F +N ADD + A+++ N ++ + GR ++ S R R + E +++
Sbjct: 257 FGFVNFENADDAAR-AVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKF 315
Query: 119 ----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFADEHGARAAL 173
+YV ++D +I++E+L +FS G V C+V DP+ + + FV F+ A A+
Sbjct: 316 QSSNLYVKNLDPSISDEKLKEIFSPFGTVTSCKVMRDPNGTSKGSGFVAFSTPEEATEAM 375
Query: 174 N-LGGTMLGYYPVRV 187
+ L G M+ P+ V
Sbjct: 376 SQLSGKMIESKPLYV 390
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFAD-EHGARAALN 174
++YV D+D N+T+ +L FS G VV RVC D L + +V F + + ARA
Sbjct: 37 SLYVGDLDVNVTDSQLFDAFSQMGPVVSVRVCRDLATRRSLGYGYVNFTNPQDAARAIQE 96
Query: 175 LGGTMLGYYPVRVL 188
L L P+RV+
Sbjct: 97 LNYIPLYGKPIRVM 110
>gi|432919034|ref|XP_004079712.1| PREDICTED: ELAV-like protein 2-like [Oryzias latipes]
Length = 389
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 18/126 (14%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 64 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDA 122
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 123 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 168
Query: 229 EVKQFF 234
E++Q F
Sbjct: 169 ELEQLF 174
>gi|413924475|gb|AFW64407.1| hypothetical protein ZEAMMB73_935050 [Zea mays]
Length = 171
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALNL 175
R+VYV ++D T E + F +CG V + D + FA+VEF ++ + ALNL
Sbjct: 45 RSVYVGNVDYACTPEEVQQHFQACGTVNRVTILTDKFGQPKGFAYVEFLEQEAVQEALNL 104
Query: 176 GGTMLGYYPVRVLPSKTAI 194
+ L ++V P +T +
Sbjct: 105 NESELHGRQIKVAPKRTNV 123
>gi|213623456|gb|AAI69769.1| ElrC protein [Xenopus laevis]
Length = 341
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D + A
Sbjct: 30 DDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDAD 89
Query: 171 AALN-LGGTMLGYYPVRVL---PSKTAILPVN--PTFLPRSEDEREM 211
A+N L G L ++V PS +I N + LP++ +++EM
Sbjct: 90 KAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSSLPKTMNQKEM 136
>gi|170095009|ref|XP_001878725.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164646029|gb|EDR10275.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 332
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 9/80 (11%)
Query: 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV-----CGDPHSVLRFAFVEFADEHG 168
+ + V+V ++ N+ E++L +F S GQV+ R+ G P + F EFAD
Sbjct: 2 AASKVVFVGNVPYNMAEDQLIDVFKSVGQVIGFRLSYDRDTGKPKG---YGFCEFADHET 58
Query: 169 ARAAL-NLGGTMLGYYPVRV 187
A +A+ NL G +G P+R+
Sbjct: 59 AMSAVRNLNGVDVGGRPLRI 78
>gi|301763026|ref|XP_002916933.1| PREDICTED: ELAV-like protein 2-like [Ailuropoda melanoleuca]
Length = 427
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 24/129 (18%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 103 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 161
Query: 170 RAALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 162 EKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTM 204
Query: 226 PQAEVKQFF 234
Q E++Q F
Sbjct: 205 TQKELEQLF 213
>gi|332376136|gb|AEE63208.1| unknown [Dendroctonus ponderosae]
Length = 371
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
+++ +T+YV ++D ++ E+ L LFS G V C++ +P + +AFVEF + A
Sbjct: 3 DEAYPKTLYVGNLDISVQEDLLCALFSQIGPVKGCKIIREPGND-PYAFVEFTNHQSAST 61
Query: 172 AL 173
AL
Sbjct: 62 AL 63
>gi|134026264|gb|AAI36135.1| ELAV (embryonic lethal, abnormal vision)-like 3 (Hu antigen C)
[Xenopus (Silurana) tropicalis]
Length = 342
Score = 43.9 bits (102), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D + A
Sbjct: 31 DDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDAD 90
Query: 171 AALN-LGGTMLGYYPVRVL---PSKTAILPVN--PTFLPRSEDEREM 211
A+N L G L ++V PS +I N + LP++ +++EM
Sbjct: 91 KAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSSLPKTMNQKEM 137
>gi|395748220|ref|XP_003778730.1| PREDICTED: LOW QUALITY PROTEIN: embryonic polyadenylate-binding
protein 2 [Pongo abelii]
Length = 278
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFA 164
++ ++ R+VYV ++D + E L FS CG+V + C + G P +A++EFA
Sbjct: 140 EKVEAXHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKG---YAYIEFA 196
Query: 165 DEHGARAALNLGGTMLGYYPVRVLPSKT 192
+ +AA+ L ++ ++VLP +T
Sbjct: 197 TKRSVQAAVELDQSLFRGRVIKVLPKRT 224
>gi|358055630|dbj|GAA98461.1| hypothetical protein E5Q_05147 [Mixia osmundae IAM 14324]
Length = 1071
Score = 43.9 bits (102), Expect = 0.063, Method: Composition-based stats.
Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 6/126 (4%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARA 171
D+ RR + VS + + E L LF+ CG V R+ D + R AFV+F D GA
Sbjct: 827 DTHRREILVSQLTPFVKEYDLRKLFTPCGVVTAIRIQTDAKGLCRGAAFVDFEDVAGAAK 886
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDER--EMCSRTVYCTNIDKKVPQAE 229
AL L T + V+ + L P S R + SR+V T + V +
Sbjct: 887 ALELNNTEFKKRHIAVVLASQRGLKEKQ---PESGQGRKADATSRSVTATGLPDGVLEPL 943
Query: 230 VKQFFE 235
++Q FE
Sbjct: 944 LQQVFE 949
>gi|291383147|ref|XP_002708097.1| PREDICTED: ELAV-like 2-like isoform 2 [Oryctolagus cuniculus]
Length = 376
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 24/129 (18%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D L + FV + D A
Sbjct: 64 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 122
Query: 170 RAALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 123 EKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTM 165
Query: 226 PQAEVKQFF 234
Q E++Q F
Sbjct: 166 TQKELEQLF 174
>gi|164657987|ref|XP_001730119.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
gi|159104014|gb|EDP42905.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
Length = 664
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 17/139 (12%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ RR +++ ++D+ I + L F++ G+++ C+V + H L + F
Sbjct: 152 RIMWSQRDPGQRRAGQGNIFIKNLDEAIDNKALHDTFAAFGKILSCKVASNEHGSLGYGF 211
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRV---LPSKTAILPVNPTFLPRSEDEREMCSRTV 216
V + A AA+ ++ G +L V V + K + +E V
Sbjct: 212 VHYESNDAAEAAIKHVNGMLLNDKKVYVGHHISKKDRQAKI---------EEARAHYTNV 262
Query: 217 YCTNIDKKVPQAEVKQFFE 235
Y N+D V Q E ++ FE
Sbjct: 263 YVKNLDPAVTQEEFEKLFE 281
Score = 40.8 bits (94), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 13/116 (11%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGA 169
+ SV ++YV +++ N+ E L +F+ G V RVC D L +A+V F + +
Sbjct: 75 QGSVNTSLYVGELEPNVNEAILFEIFNMVGAVSSIRVCRDTVTRRSLGYAYVNFLNAEDS 134
Query: 170 RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
AL L Y P+R P + + R +R ++ N+D+ +
Sbjct: 135 ERALE----QLNYTPIRGRPCRI-------MWSQRDPGQRRAGQGNIFIKNLDEAI 179
>gi|403221305|dbj|BAM39438.1| polyadenylate-binding protein [Theileria orientalis strain
Shintoku]
Length = 656
Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAAL-N 174
++YV D+ ++TE L +F++ G V RVC D L +A+V + A AAL N
Sbjct: 28 SLYVGDLQPDVTEAVLYEVFNTIGPVASIRVCRDSVTRKSLGYAYVNYYSTQDAEAALEN 87
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
L + +P R++ S R R+ + ++ N+DK +
Sbjct: 88 LNYIEIKGHPTRIMWSN------------RDPSLRKSGAGNIFVKNLDKSI 126
>gi|18402769|ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|334183191|ref|NP_001185184.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|17978685|gb|AAL47336.1| putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|332194351|gb|AEE32472.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|332194352|gb|AEE32473.1| poly(A) binding protein 8 [Arabidopsis thaliana]
Length = 671
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 54/97 (55%), Gaps = 9/97 (9%)
Query: 102 LSGRAFRAQ---REDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
L+GRA R R+ S+R++ +++ ++D++I + L FS+ G ++ C+V DP
Sbjct: 111 LNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSG 170
Query: 155 VLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRVLP 189
+ + FV++ + A+ A++ L G +L V V P
Sbjct: 171 QSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGP 207
Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+D +T+ +L F+ GQVV RVC D + L + +V +A A ALN
Sbjct: 46 SLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNE 105
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L L +RV+ + R R+ ++ N+DK + + + F
Sbjct: 106 LNFMALNGRAIRVM------------YSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETF 153
Query: 235 EA 236
A
Sbjct: 154 SA 155
Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 105 RAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEF 163
++ + + S +YV ++D+++T+++L F+ G + C+V DP V R + FV F
Sbjct: 315 QSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAF 374
Query: 164 AD-EHGARAALNLGGTMLGYYPVRV 187
+ E RA + G M+ P+ V
Sbjct: 375 STPEEATRAITEMNGKMIVTKPLYV 399
>gi|71896483|ref|NP_001025497.1| ELAV-like protein 3 [Xenopus (Silurana) tropicalis]
gi|123913100|sp|Q28FX0.1|ELAV3_XENTR RecName: Full=ELAV-like protein 3; AltName: Full=Protein ElrC
gi|89266725|emb|CAJ83874.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu
antigen C) [Xenopus (Silurana) tropicalis]
Length = 343
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D + A
Sbjct: 31 DDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDAD 90
Query: 171 AALN-LGGTMLGYYPVRVL---PSKTAILPVN--PTFLPRSEDEREM 211
A+N L G L ++V PS +I N + LP++ +++EM
Sbjct: 91 KAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSSLPKTMNQKEM 137
>gi|83774819|dbj|BAE64942.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1037
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 14/176 (7%)
Query: 74 ADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERL 133
D N + A+ FN+ R Q R + S F + + T++V++ E +
Sbjct: 612 GDGNSEVAVIEFNS--RDEALVAQTRDQKSLDGFTIEVQIGTCSTLFVTNFPPEADENYI 669
Query: 134 AGLFSSCGQVVDCRVCGDPHSV-LRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192
GLF G+++D R ++ RF +V+F A +A L GT +G K
Sbjct: 670 RGLFREYGEIIDVRFPSLKYNTHRRFCYVQFKTAEAAHSATKLDGTTVG---------KG 720
Query: 193 AILPVNPTFLPRSEDEREMC--SRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLP 246
L + R +D R ++ +N+D K + +V++ F E+ LP
Sbjct: 721 LTLTAKISDPSRKQDRHGPIYEGREIHVSNVDFKASERDVQELFSKYGTVELVRLP 776
>gi|47217896|emb|CAG05018.1| unnamed protein product [Tetraodon nigroviridis]
Length = 558
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 24/146 (16%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ +++ ++D++I + L FS+ G ++ C+V D +
Sbjct: 64 IKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG 123
Query: 155 VLRFAFVEFADEHGA-RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
+ FV F A RA + G +L V V F R E E E+ +
Sbjct: 124 SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGA 172
Query: 214 RT-----VYCTNIDKKVPQAEVKQFF 234
R VY N + + ++K+ F
Sbjct: 173 RAREFTNVYIKNFGEDMDDEKLKELF 198
Score = 40.4 bits (93), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 12/124 (9%)
Query: 76 DNKQSAIDNFNNNRRRRNNFNQGRKRLSG-------RAFRAQREDSVRR----TVYVSDI 124
++ Q A+D+ N GR + G R F ++D + R +YV ++
Sbjct: 229 EDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKNL 288
Query: 125 DQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD-EHGARAALNLGGTMLGYY 183
D + +ERL FS G + +V + F FV F+ E +A + G ++
Sbjct: 289 DDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 348
Query: 184 PVRV 187
P+ V
Sbjct: 349 PLYV 352
>gi|354484923|ref|XP_003504635.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 672
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 22/129 (17%)
Query: 76 DNKQSAIDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRR----------------TV 119
+ Q A+D+ N R GR + RA+R+ ++R +
Sbjct: 305 EEAQKAVDHMNGKEVRGQLLYVGRAQK-----RAERQSELKRRFEQVKQERQNRYQGVNL 359
Query: 120 YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD-EHGARAALNLGGT 178
YV ++D +I +ERL +FS+ G + +V + F FV F+ E +A + G
Sbjct: 360 YVKNLDDSINDERLKEVFSAYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGR 419
Query: 179 MLGYYPVRV 187
++G P+ V
Sbjct: 420 IVGTKPLYV 428
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L +FS G ++ RVC D + L +A++ F A AL+
Sbjct: 75 SLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 134
Query: 175 LGGTMLGYYPVRVLPS 190
+ M+ P+R++ S
Sbjct: 135 MNFEMIKGQPIRIMWS 150
>gi|338723296|ref|XP_001488137.2| PREDICTED: embryonic polyadenylate-binding protein 2-like [Equus
caballus]
Length = 271
Score = 43.9 bits (102), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F+ CG++ + C + G P +A++EFA E A+
Sbjct: 140 RSIYVGNVDYGGTAEELEAYFNQCGEIRRVTILCDKFSGHPKG---YAYIEFATESAAQT 196
Query: 172 ALNLGGTMLGYYPVRVLPSKTAILPVNPT 200
A+ L ++ ++VLP +T + ++ T
Sbjct: 197 AVELDESIFRGRVIKVLPKRTNLPGISST 225
>gi|395513917|ref|XP_003761168.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA-binding protein 19
[Sarcophilus harrisii]
Length = 954
Score = 43.9 bits (102), Expect = 0.065, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 9/134 (6%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV-----LRFAFVEFADEHGARAA 172
T+++ +++ + TEE L +FS G V C V + + F FVE+ A+ A
Sbjct: 718 TLFIKNLNFSTTEEMLKEVFSKVGTVKSCTVSKKKNKAGVLLSMGFGFVEYRKPEQAQKA 777
Query: 173 L-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVK 231
L L G+++ + + V S+ AI PV + R ++ S+ + NI + + E++
Sbjct: 778 LKQLQGSVVDGHKLEVKISERAIKPVVTSARQRQTAHKQKTSK-ILVRNIPFQANKQEIR 836
Query: 232 QFFEAACGGEVRTL 245
+ F GE++T+
Sbjct: 837 ELFSTF--GELKTV 848
>gi|356555656|ref|XP_003546146.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 411
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LG 176
T++V ++D N+T++ L +FS G++V ++ + R FV+FAD A AL L
Sbjct: 271 TIFVGNLDPNVTDDHLRQVFSQYGELVHVKI----PAGKRCGFVQFADRSCAEEALRVLN 326
Query: 177 GTMLGYYPVRV 187
GT+LG VR+
Sbjct: 327 GTLLGGQNVRL 337
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 69/142 (48%), Gaps = 18/142 (12%)
Query: 108 RAQREDSVRRTVYVSDIDQNITEERLAGLFSS------CGQVVDCRVCGDPHSVLRFAFV 161
R++++DS T++V D+ ++T+ L F + +VV R+ G + FV
Sbjct: 152 RSRQDDSPDYTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTG---RTKGYGFV 208
Query: 162 EFADE-HGARAALNLGGTMLGYYPVRVLPS--KTAILPVNP--TFL---PR-SEDEREMC 212
F++E RA + G + P+R+ P+ KT P ++L P+ S++E +
Sbjct: 209 RFSEESEQMRAMTEMQGVLCSTRPMRIGPASNKTPATQSQPKASYLNSQPQGSQNENDPN 268
Query: 213 SRTVYCTNIDKKVPQAEVKQFF 234
+ T++ N+D V ++Q F
Sbjct: 269 NTTIFVGNLDPNVTDDHLRQVF 290
>gi|349732184|ref|NP_001025498.3| ELAV-like protein 2 [Xenopus (Silurana) tropicalis]
gi|288561906|sp|Q28GD4.2|ELAV2_XENTR RecName: Full=ELAV-like protein 2; AltName: Full=Protein ElrB
Length = 375
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 18/126 (14%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 63 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 121
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 122 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 167
Query: 229 EVKQFF 234
E++Q F
Sbjct: 168 ELEQLF 173
>gi|195637520|gb|ACG38228.1| polyadenylate-binding protein 2 [Zea mays]
Length = 194
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALNL 175
R+VYV ++D T E + F +CG V + D + FA+VEF ++ + ALNL
Sbjct: 68 RSVYVGNVDYACTPEEVQQHFQACGTVNRVTILTDKFGQPKGFAYVEFLEQEAVQEALNL 127
Query: 176 GGTMLGYYPVRVLPSKTAI 194
+ L ++V P +T +
Sbjct: 128 NESELHGRQIKVAPKRTNV 146
>gi|255555523|ref|XP_002518798.1| nuclear acid binding protein, putative [Ricinus communis]
gi|223542179|gb|EEF43723.1| nuclear acid binding protein, putative [Ricinus communis]
Length = 438
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 15/81 (18%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV-----CGDPHSVLRFAFVEFADEH 167
DS T++V ID +I++E L FS G+VV ++ CG FV+FAD
Sbjct: 313 DSNNTTIFVGGIDSDISDEDLRQPFSQFGEVVSVKIPAGKGCG---------FVQFADRK 363
Query: 168 GARAAL-NLGGTMLGYYPVRV 187
A AL +L GT +G VR+
Sbjct: 364 SAEDALQSLNGTTIGKQTVRL 384
>gi|126342235|ref|XP_001367420.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 635
Score = 43.9 bits (102), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 16/122 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ +++ ++D++I + L FS+ G ++ C+V D H + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALFDTFSAFGNILSCKVVCDEHGSKGYGF 142
Query: 161 VEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCT 219
V F A A++ + G +L V V F R E E E+ +R T
Sbjct: 143 VHFETRDAAERAIDKMNGMLLNDRKVFV-----------GRFKSRKEREAELGARAKEFT 191
Query: 220 NI 221
N+
Sbjct: 192 NV 193
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 13/138 (9%)
Query: 62 TDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSG-------RAFRAQREDS 114
T F +N +D Q A++ N GR + G R F ++D
Sbjct: 229 TSKGFGFVNFERHED-AQKAVEEMNGKELNGKKIYVGRAQKKGERQTELKRKFEQLKQDR 287
Query: 115 VRR----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD-EHGA 169
+ R +YV ++D I +ERL FS G + +V + F FV F+ E
Sbjct: 288 ITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRNKGFGFVCFSSPEEAT 347
Query: 170 RAALNLGGTMLGYYPVRV 187
+A + G ++ P+ +
Sbjct: 348 KAVTEMNGRIVATKPLYI 365
>gi|328852276|gb|EGG01423.1| hypothetical protein MELLADRAFT_39080 [Melampsora larici-populina
98AG31]
Length = 701
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 75/184 (40%), Gaps = 27/184 (14%)
Query: 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPS-YYHQHTDHHFSVINNNFADDNKQSA 81
NL K +E T ++L +MF+K P+ + +H F N+ ++ A
Sbjct: 238 TNLYIKNLPTEVTTEELNEMFSKYGPVTSAAVQADESGKHRGFGFVNYENH---ESASKA 294
Query: 82 IDNFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRRT----------------VYVSDID 125
++ ++ + N R + R +R+ +RR +Y+ ++D
Sbjct: 295 VEALHDKDYKGNILYVARAQK-----RVERDAELRRAHEQQKYETTLKYQGVNLYIKNLD 349
Query: 126 QNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEF-ADEHGARAALNLGGTMLGYY 183
+E+L F G + C+V D V R F FV F A + +A + G MLG
Sbjct: 350 DEYDDEKLQAEFLPFGTITSCKVMKDDKGVSRGFGFVCFSAPDEATKAVAEMNGKMLGSK 409
Query: 184 PVRV 187
P+ V
Sbjct: 410 PLYV 413
>gi|449513137|ref|XP_004164242.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 212
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFA 164
A +A +E++ R+V+V ++D T E + F SCG V + D + FA+VEF
Sbjct: 75 ASQAGKEETDSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFL 134
Query: 165 DEHGARAALNLGGTMLGYYPVRVLPSKTAI 194
+ + AL L + L ++VLP +T +
Sbjct: 135 EAEAVQEALVLNESELHGRQLKVLPKRTNV 164
>gi|89266927|emb|CAJ82281.1| ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu
antigen B) [Xenopus (Silurana) tropicalis]
Length = 374
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 18/126 (14%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 63 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 121
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 122 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 167
Query: 229 EVKQFF 234
E++Q F
Sbjct: 168 ELEQLF 173
>gi|367015182|ref|XP_003682090.1| hypothetical protein TDEL_0F00680 [Torulaspora delbrueckii]
gi|359749752|emb|CCE92879.1| hypothetical protein TDEL_0F00680 [Torulaspora delbrueckii]
Length = 388
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCG--DPHSVLRFAFVEFADEHGARAAL- 173
R ++V ++ + T+E L F CG++V R+ D FAFV+F DE GA AL
Sbjct: 221 RILFVGNLSFDTTDELLKKHFQHCGEIVKIRMATFQDSGKCKGFAFVDFKDEEGATNALK 280
Query: 174 NLGGTMLGYYPVRV 187
+ G + P+R+
Sbjct: 281 DKGCRKIAQRPIRM 294
>gi|348550266|ref|XP_003460953.1| PREDICTED: embryonic polyadenylate-binding protein 2-like [Cavia
porcellus]
Length = 273
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG+V + C + G P +A+VEFA + A+A
Sbjct: 142 RSIYVGNVDYGGTAEELEAHFHRCGEVHRVTILCDKFSGHPKG---YAYVEFATQRSAQA 198
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
A+ L ++ ++VLP +T
Sbjct: 199 AVELDESIFRGRALKVLPKRT 219
>gi|340719920|ref|XP_003398392.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
terrestris]
Length = 609
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ M+ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDMIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKNI 110
Score = 43.5 bits (101), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+NI + + FS+ G ++ C+V D
Sbjct: 77 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESG 136
Query: 155 VLR-FAFVEFADEHGARAALNLGGTML 180
V + + FV F E A +++ ML
Sbjct: 137 VSKGYGFVHFETEEAANKSIDRVNGML 163
>gi|255080002|ref|XP_002503581.1| predicted protein [Micromonas sp. RCC299]
gi|226518848|gb|ACO64839.1| predicted protein [Micromonas sp. RCC299]
Length = 597
Score = 43.9 bits (102), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 23/154 (14%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R++ +++ ++D+ I + L FS G +V +V D V + +
Sbjct: 92 RIMYSQRDPALRKSGVGNIFIKNLDKEIDNKALYDTFSQFGNIVSAKVAADGQGVSKGYG 151
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS-RTVY 217
FV+FA++ A+ A++ + G +L V V P F R E + VY
Sbjct: 152 FVQFAEQEAAQQAIDKVNGMLLNDKQVYVGP-----------FQRRGERGGGPTTFNNVY 200
Query: 218 CTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIIL 251
N+ + V + ++K+ F G V L ++I+
Sbjct: 201 VKNLHESVDEDKLKEVF-----GAVGKLTSVVIM 229
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 23/115 (20%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAA--- 172
++Y D+D N TE +L LFS+ G VV RVC D L +A+V F + GA AA
Sbjct: 21 SLYCGDLDSNCTEAQLYELFSTIGPVVSIRVCRDLITRRSLGYAYVNF--QQGADAARAI 78
Query: 173 --LNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
LN ++ P+R++ S+ +P R+ ++ N+DK++
Sbjct: 79 DVLNF--NVVNGKPIRIMYSQR-----DPAL-------RKSGVGNIFIKNLDKEI 119
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 107 FRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFV 161
F A+R + + + +Y+ +++ + + +L LF+ G + CRV D R AFV
Sbjct: 287 FDAERRERLEKMAGANLYIKNLEDTVDDAKLRELFAEFGTITSCRVMRDASGASRGSAFV 346
Query: 162 EFAD-EHGARAALNLGGTMLGYYPVRV 187
F+ + RA + G M G P+ V
Sbjct: 347 AFSSADEATRAVTEMNGKMAGTKPLYV 373
>gi|356548971|ref|XP_003542872.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 409
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LG 176
T++V ++D N+T++ L +FS G++V ++ + R FV+FAD A AL L
Sbjct: 270 TIFVGNLDPNVTDDHLRQVFSQYGELVHVKI----PAGKRCGFVQFADRSCAEEALRVLN 325
Query: 177 GTMLGYYPVRV 187
GT+LG VR+
Sbjct: 326 GTLLGGQNVRL 336
Score = 38.9 bits (89), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 18/142 (12%)
Query: 108 RAQREDSVRRTVYVSDIDQNITEERLAGLFSS------CGQVVDCRVCGDPHSVLRFAFV 161
R++ +DS T++V D+ ++T+ L F + +VV R+ G + FV
Sbjct: 151 RSRHDDSPDYTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRTKG---YGFV 207
Query: 162 EFADE-HGARAALNLGGTMLGYYPVRVLPS--KTAILPVNPTF-----LPR-SEDEREMC 212
F+DE RA + G + P+R+ P+ KT P P+ S++E +
Sbjct: 208 RFSDESEQVRAMTEMQGVLCSTRPMRIGPASNKTPTTQSQPKASYQNSQPQGSQNENDPN 267
Query: 213 SRTVYCTNIDKKVPQAEVKQFF 234
+ T++ N+D V ++Q F
Sbjct: 268 NTTIFVGNLDPNVTDDHLRQVF 289
>gi|351703575|gb|EHB06494.1| Polyadenylate-binding protein 1-like protein [Heterocephalus
glaber]
Length = 605
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 76 DNKQSAIDNFNNNRRRRNNFNQGRKRLSG-------RAFRAQREDSVRR----TVYVSDI 124
+ Q A+D+ N GR + G R F ++D R +YV ++
Sbjct: 242 EEAQKAVDHMNGKEVSGQQLYVGRAQKRGERQNELKRRFEQMKQDRQTRYQGVNLYVKNL 301
Query: 125 DQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD-EHGARAALNLGGTMLGYY 183
D +I++E+L +FS G + +V + F FV F+ E +A + G ++G
Sbjct: 302 DDSISDEKLRTVFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGCIVGTK 361
Query: 184 PVRV 187
P+ V
Sbjct: 362 PLYV 365
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ +R++ V++ +++ +I + L FS+ G ++ C+V D H F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNVFIKNLEDSIDSKALYDTFSTFGNILSCKVACDEHGSRGFGF 142
Query: 161 VEFADEHGARAALNLGGTML 180
V F A+ A++ ML
Sbjct: 143 VHFETNEAAQQAISTMNGML 162
>gi|345479148|ref|XP_003423887.1| PREDICTED: sex-lethal homolog isoform 3 [Nasonia vitripennis]
Length = 376
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 11/149 (7%)
Query: 34 FTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRN 93
T ++L MF + P+ Y + F +N A+D +AI+ N
Sbjct: 93 MTEKELYSMFVTIGPVESCRVMKDYKTGYSYGFGFVNYTKAED-ALTAINTLNG------ 145
Query: 94 NFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH 153
KRL R E+ +YV+++ +NITE+++ +FS GQ+V + D
Sbjct: 146 -LQVQNKRLKVSFARPSGEEIKETNLYVTNLPRNITEKQVEEIFSKFGQIVQKNILKDKL 204
Query: 154 SVL--RFAFVEFADEHGARAALN-LGGTM 179
+ L AFV + A+ A+N L GT+
Sbjct: 205 TGLPRGVAFVRYDKREEAQDAINQLHGTI 233
>gi|312378306|gb|EFR24923.1| hypothetical protein AND_10202 [Anopheles darlingi]
Length = 645
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHADITEATLFEKFSSAGPVLSIRVCRDLITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ + P+R++ S+ R R+ V+ N+DKK+
Sbjct: 72 MNFDTIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKKI 110
Score = 43.9 bits (102), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 67/148 (45%), Gaps = 25/148 (16%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+ I + + FS+ G ++ C+V D
Sbjct: 77 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKKIDNKAMYDTFSAFGNILSCKVAQDEKG 136
Query: 155 VLR-FAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMC 212
+ + FV F E A ++ + G +L V V F+ R E E+E+
Sbjct: 137 QSKGYGFVHFETEESANTSIEKVNGMLLNEKKVFV-----------GRFISRKEREKELG 185
Query: 213 SRT-----VYCTNIDKKVPQAEVKQFFE 235
+ VY N + + + + + FE
Sbjct: 186 EKAKLFTNVYVKNFGEDLTEEALHEMFE 213
>gi|15219945|ref|NP_173690.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
gi|12643628|sp|O64380.1|PABP3_ARATH RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3
gi|2505869|emb|CAA72907.1| polyA binding protein PAB3 [Arabidopsis thaliana]
gi|15450820|gb|AAK96681.1| Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis
thaliana]
gi|332192163|gb|AEE30284.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
Length = 660
Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 105 RAFRAQR----EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R F +R E S +Y+ ++D ++ +E+L +FS G V +V +P + R F
Sbjct: 316 RKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFG 375
Query: 160 FVEFAD-EHGARAALNLGGTMLGYYPVRV 187
FV +++ E RA + G M+G P+ +
Sbjct: 376 FVAYSNPEEALRALSEMNGKMIGRKPLYI 404
Score = 40.0 bits (92), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 67/141 (47%), Gaps = 22/141 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ S R + +++ ++D +I + L FSS G ++ C+V D + +
Sbjct: 120 RIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYG 179
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV+F E A+AA++ L G ++ V V F+ R E R+ + T
Sbjct: 180 FVQFEKEESAQAAIDKLNGMLMNDKQVFV-----------GHFIRRQERARDENTPTPRF 228
Query: 216 --VYCTNIDKKVPQAEVKQFF 234
VY N+ K++ + E+++ F
Sbjct: 229 TNVYVKNLPKEIGEDELRKTF 249
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGA-RAALNL 175
++Y D+D +TE L LF VV RVC D + L +A++ F++ + A RA L
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 176 GGTMLGYYPVRVL 188
T L P+R++
Sbjct: 110 NYTPLFDRPIRIM 122
>gi|9930616|gb|AAG02117.1|AF293840_1 poly(A) binding protein [Arabidopsis thaliana]
Length = 660
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 105 RAFRAQR----EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R F +R E S +Y+ ++D ++ +E+L +FS G V +V +P + R F
Sbjct: 316 RKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFG 375
Query: 160 FVEFAD-EHGARAALNLGGTMLGYYPVRV 187
FV +++ E RA + G M+G P+ +
Sbjct: 376 FVAYSNPEEALRALSEMNGKMIGRKPLYI 404
Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 67/141 (47%), Gaps = 22/141 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ S R + +++ ++D +I + L FSS G ++ C+V D + +
Sbjct: 120 RIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYG 179
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV+F E A+AA++ L G ++ V V F+ R E R+ + T
Sbjct: 180 FVQFEKEESAQAAIDKLNGMLMNDKQVFV-----------GHFIRRQERARDENTPTPRF 228
Query: 216 --VYCTNIDKKVPQAEVKQFF 234
VY N+ K++ + E+++ F
Sbjct: 229 TNVYVKNLPKEIGEDELRKTF 249
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGA-RAALNL 175
++Y D+D +TE L LF VV RVC D + L +A++ F++ + A RA L
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 176 GGTMLGYYPVRVL 188
T L P+R++
Sbjct: 110 NYTPLFDRPIRIM 122
>gi|410900504|ref|XP_003963736.1| PREDICTED: nucleolysin TIAR-like isoform 1 [Takifugu rubripes]
Length = 386
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEH---G 168
E+S+ +T+YV ++ +++TE + LFS G C++ D S + FVEF D
Sbjct: 5 EESLSKTLYVGNLSRDVTEILILQLFSQIGPCKSCKMITDHTSSDPYCFVEFVDHKDAAS 64
Query: 169 ARAALN 174
ARA +N
Sbjct: 65 ARATMN 70
>gi|15226817|ref|NP_181639.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|145331087|ref|NP_001078035.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|16612302|gb|AAL27512.1|AF439844_1 At2g41060/T3K9.17 [Arabidopsis thaliana]
gi|3402711|gb|AAD12005.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|22137136|gb|AAM91413.1| At2g41060/T3K9.17 [Arabidopsis thaliana]
gi|110742573|dbj|BAE99200.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|330254826|gb|AEC09920.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|330254827|gb|AEC09921.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 451
Score = 43.9 bits (102), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 65/161 (40%), Gaps = 15/161 (9%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGA 169
ED V R ++V + + + L F G++ DC+ D S + F+ F GA
Sbjct: 123 EDLVHRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGA 182
Query: 170 RAALNLGGTMLGYYPVRVLPSKTA-ILPV--NPTFLPRSEDEREMCSRTVYCTNIDKKVP 226
R AL +G R+ + A I PV NP P E R +Y +N+ +
Sbjct: 183 RNALKQPQKKIG---TRMTACQLASIGPVQGNPVVAPAQHFNPENVQRKIYVSNVSADID 239
Query: 227 QAEVKQFFEAACGGEVRTLPCMIILFY-----FHLFIYYFL 262
++ +FF GE+ P + F LF+Y L
Sbjct: 240 PQKLLEFFSRF--GEIEEGPLGLDKATGRPKGFALFVYRSL 278
>gi|452840300|gb|EME42238.1| hypothetical protein DOTSEDRAFT_73158 [Dothistroma septosporum
NZE10]
Length = 379
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFAD-EHGA 169
D + + V ++ +T++ L F++ G V RV D + F FVEF D E G
Sbjct: 239 DPTKFRIMVGNLAGEVTDDSLTKAFANYG-VNKARVIRDKRTTKSKGFGFVEFTDGEQGF 297
Query: 170 RAALNLGGTMLGYYPVRVLPSKTAILPV 197
+AA + G +G +PV + ++T + P+
Sbjct: 298 KAAREMSGKYIGSHPVTIQRARTNVAPI 325
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 74 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 133
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 134 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 182
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 183 NVYIKNFGEEVDDDNLKELF 202
Score = 38.9 bits (89), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 63 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 101
>gi|302795494|ref|XP_002979510.1| hypothetical protein SELMODRAFT_111082 [Selaginella moellendorffii]
gi|300152758|gb|EFJ19399.1| hypothetical protein SELMODRAFT_111082 [Selaginella moellendorffii]
Length = 432
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
D T++V +D NITEE + FS G++V ++ AFV++A + A A
Sbjct: 244 DPTNTTIFVGGLDLNITEEEVKQTFSHIGELVSVKIPPGKGC----AFVQYAQRNSAEDA 299
Query: 173 LN-LGGTMLGYYPVRV----LPSKTAILPVNP 199
L L GT++G +R+ P+ T P +P
Sbjct: 300 LQRLHGTVIGQQAIRLSWGRSPTSTKQAPTSP 331
>gi|13540314|gb|AAK29408.1|AF338225_1 embryonic poly(A) binding protein [Xenopus laevis]
Length = 629
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ +R++ V++ ++D++I + L FS+ G ++ C+V D H
Sbjct: 77 IKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG 136
Query: 155 VLRFAFVEFADEHGA-RAALNLGGTML 180
+ FV F A RA + G +L
Sbjct: 137 SRGYGFVHFETHEAANRAIQTMNGMLL 163
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++Y+ D+ ++TE L FS G ++ RVC D L +A++ F A AL+
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSK 191
+ ++ P+R++ S+
Sbjct: 72 MNFEVIKGRPIRIMWSQ 88
>gi|148227542|ref|NP_001082094.1| embryonic polyadenylate-binding protein A [Xenopus laevis]
gi|94711253|sp|Q98SP8.2|EPABA_XENLA RecName: Full=Embryonic polyadenylate-binding protein A;
Short=Embryonic poly(A)-binding protein A; Short=ePAB-A;
Short=ePABP-A; AltName: Full=XePABP-A
gi|51258324|gb|AAH80020.1| EPAB protein [Xenopus laevis]
Length = 629
Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ +R++ V++ ++D++I + L FS+ G ++ C+V D H
Sbjct: 77 IKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG 136
Query: 155 VLRFAFVEFADEHGA-RAALNLGGTML 180
+ FV F A RA + G +L
Sbjct: 137 SRGYGFVHFETHEAANRAIQTMNGMLL 163
Score = 37.4 bits (85), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++Y+ D+ ++TE L FS G ++ RVC D L +A++ F A AL+
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSK 191
+ ++ P+R++ S+
Sbjct: 72 MNFEVIKGRPIRIMWSQ 88
>gi|413924471|gb|AFW64403.1| polyadenylate-binding protein 2 [Zea mays]
Length = 194
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALNL 175
R+VYV ++D T E + F +CG V + D + FA+VEF ++ + ALNL
Sbjct: 68 RSVYVGNVDYACTPEEVQQHFQACGTVNRVTILTDKFGQPKGFAYVEFLEQEAVQEALNL 127
Query: 176 GGTMLGYYPVRVLPSKTAI 194
+ L ++V P +T +
Sbjct: 128 NESELHGRQIKVAPKRTNV 146
>gi|224081120|ref|XP_002306300.1| predicted protein [Populus trichocarpa]
gi|222855749|gb|EEE93296.1| predicted protein [Populus trichocarpa]
Length = 218
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 106 AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFA 164
A +A RE++ R+V+V ++D T E + F SCG V + D + FA+VEF
Sbjct: 79 ANQANREEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFL 138
Query: 165 DEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPR 204
+ + AL L + L ++V P +T + P + PR
Sbjct: 139 EVEAVQEALALNESELHGRQLKVSPKRTNV-PGMKQYRPR 177
>gi|193650237|ref|XP_001943392.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 650
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 68/141 (48%), Gaps = 20/141 (14%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+R++ V++ ++D++I + + FS+ G ++ C+V D + +
Sbjct: 74 RIMWSQRDPSLRKSGVGNVFIKNLDRSIDNKAMYDTFSAFGNILSCKVAQDETGNSKGYG 133
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
FV F + A ++ ML L K + F+ R++ E+E+ R
Sbjct: 134 FVHFETKQSATQSIEKVNGML-------LNGKKVFV---GRFVGRNDREKELGQRAKLYT 183
Query: 216 -VYCTNIDKKVPQAEVKQFFE 235
VY NID+ V + E+ + F+
Sbjct: 184 NVYIKNIDENVNEKELFEMFK 204
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD-EHGARAALNLGG 177
+YV ++D I +ERL FS+ G + +V D F FV F+ E +A ++ G
Sbjct: 289 LYVKNLDDTIDDERLRREFSAFGTIKSAKVMMDDGRSKGFGFVYFSSPEEATKAVTDMNG 348
Query: 178 TMLGYYPVRV 187
++G P+ V
Sbjct: 349 RIVGTKPLYV 358
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS+ G ++ RVC S L +A+V F + A AL+
Sbjct: 3 SLYVGDLHSDVTEAMLFEKFSTVGAILSIRVCRHVITRSSLGYAYVNFQNIADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ +L +P+R++ S+ R R+ V+ N+D+ +
Sbjct: 63 MNFDILKGHPMRIMWSQ------------RDPSLRKSGVGNVFIKNLDRSI 101
Score = 39.3 bits (90), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVC-GDPHSVLRFAFVEFADEHGARAAL 173
VY+ +ID+N+ E+ L +F G + C+V D S F FV F D A A+
Sbjct: 185 VYIKNIDENVNEKELFEMFKKYGTITSCKVMFKDDGSSRGFGFVAFEDPKEAEKAV 240
>gi|71402700|ref|XP_804229.1| RNA-binding protein [Trypanosoma cruzi strain CL Brener]
gi|70867087|gb|EAN82378.1| RNA-binding protein, putative [Trypanosoma cruzi]
Length = 737
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 86 NNNRRRRNNFNQGRKRLSGRAFRAQREDS--VRRTVYVSDIDQNITEERLAGLFSSCGQV 143
N ++R+ F K R + D+ + RTV++ + + + LA L S CG+
Sbjct: 55 NFSKRQHREFKALSKEERQRLVEEEAADTDLLERTVHLRFLPSGMLQGELAALCSECGEF 114
Query: 144 VDCRVCGDPHSVLR---FAFVEFADEHGARAALNLGGTML----GYYPVRV 187
+ R+CG+ +V + + FVEFAD GA L G + G P+R+
Sbjct: 115 LRVRLCGN-FTVTQNWIYGFVEFADRRGAERMLQRSGMEMPNGSGKPPLRL 164
>gi|3287682|gb|AAC25510.1| Strong similarity to gb|M97657 poly(A)-binding protein (PABP5) from
A. thaliana [Arabidopsis thaliana]
Length = 655
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 105 RAFRAQR----EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R F +R E S +Y+ ++D ++ +E+L +FS G V +V +P + R F
Sbjct: 316 RKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFG 375
Query: 160 FVEFAD-EHGARAALNLGGTMLGYYPVRV 187
FV +++ E RA + G M+G P+ +
Sbjct: 376 FVAYSNPEEALRALSEMNGKMIGRKPLYI 404
Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 67/141 (47%), Gaps = 22/141 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ S R + +++ ++D +I + L FSS G ++ C+V D + +
Sbjct: 120 RIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYG 179
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV+F E A+AA++ L G ++ V V F+ R E R+ + T
Sbjct: 180 FVQFEKEESAQAAIDKLNGMLMNDKQVFV-----------GHFIRRQERARDENTPTPRF 228
Query: 216 --VYCTNIDKKVPQAEVKQFF 234
VY N+ K++ + E+++ F
Sbjct: 229 TNVYVKNLPKEIGEDELRKTF 249
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGA-RAALNL 175
++Y D+D +TE L LF VV RVC D + L +A++ F++ + A RA L
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 176 GGTMLGYYPVRVL 188
T L P+R++
Sbjct: 110 NYTPLFDRPIRIM 122
>gi|350408508|ref|XP_003488428.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
impatiens]
Length = 601
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ +ITE L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ M+ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDMIKGRPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKNI 110
Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ V++ ++D+NI + + FS+ G ++ C+V D
Sbjct: 77 IKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFSAFGNILSCKVAQDESG 136
Query: 155 VLR-FAFVEFADEHGARAALNLGGTML 180
V + + FV F E A +++ ML
Sbjct: 137 VSKGYGFVHFETEEAANKSIDRVNGML 163
>gi|261192178|ref|XP_002622496.1| actin cytoskeleton protein [Ajellomyces dermatitidis SLH14081]
gi|239589371|gb|EEQ72014.1| actin cytoskeleton protein [Ajellomyces dermatitidis SLH14081]
gi|239615088|gb|EEQ92075.1| actin cytoskeleton protein [Ajellomyces dermatitidis ER-3]
gi|327349796|gb|EGE78653.1| actin cytoskeleton protein [Ajellomyces dermatitidis ATCC 18188]
Length = 252
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV---CGDPHSVLRFAFVEFADEHGAR 170
S TV+V+DI TE+ + FS CG++ + G+P + + A V F E A+
Sbjct: 2 SSHTTVHVADISSKTTEKEVRDFFSFCGKITSLSITPSSGEPDAT-QSATVTFEKEAAAK 60
Query: 171 AALNLGGTMLGYYPVRV 187
AL L T LG V+V
Sbjct: 61 TALLLDNTQLGPSSVKV 77
>gi|224137382|ref|XP_002327112.1| predicted protein [Populus trichocarpa]
gi|222835427|gb|EEE73862.1| predicted protein [Populus trichocarpa]
Length = 429
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 20/108 (18%)
Query: 90 RRRNNFNQ----GRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVD 145
R+ + + Q G S + F++ DS T++V +D N+T+E L FS G++V
Sbjct: 266 RKSSGYQQQGGYGSNGASAQGFQSDG-DSNNTTIFVGGLDPNVTDEDLKQPFSQYGEIVS 324
Query: 146 CRV-----CGDPHSVLRFAFVEFADEHGARAALN-LGGTMLGYYPVRV 187
++ CG FV+FA+ A AL L GT++G VR+
Sbjct: 325 VKIPVGKGCG---------FVQFANRDNAEEALQKLNGTVIGKQTVRL 363
>gi|71402759|ref|XP_804253.1| RNA-binding protein [Trypanosoma cruzi strain CL Brener]
gi|70867122|gb|EAN82402.1| RNA-binding protein, putative [Trypanosoma cruzi]
Length = 733
Score = 43.9 bits (102), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 86 NNNRRRRNNFNQGRKRLSGRAFRAQREDS--VRRTVYVSDIDQNITEERLAGLFSSCGQV 143
N ++R+ F K R + D+ + RTV++ + + + LA L S CG+
Sbjct: 51 NFSKRQHREFKALSKEERQRLVEEEAADTDLLERTVHLRFLPSGMLQGELAALCSECGEF 110
Query: 144 VDCRVCGDPHSVLR---FAFVEFADEHGARAALNLGGTML----GYYPVRV 187
+ R+CG+ +V + + FVEFAD GA L G + G P+R+
Sbjct: 111 LRVRLCGN-FTVTQNWIYGFVEFADRRGAERMLQRSGMEMPNGSGKPPLRL 160
>gi|340502094|gb|EGR28811.1| splicing factor subunit 4, putative [Ichthyophthirius multifiliis]
Length = 267
Score = 43.9 bits (102), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 98 GRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--V 155
G+ +A + +R V +++ ++DQ+ITE++L FS G ++ R+ DP +
Sbjct: 80 GKPIKVNKASQDKRTQEVGANIFIGNLDQSITEQQLHDTFSQFGLIISRRIVRDPDNDES 139
Query: 156 LRFAFVEFADEHGARAALN-LGGTMLGYYPVRV 187
+AFV + + A AA+N + G G + V
Sbjct: 140 KGYAFVSYDNFEAADAAINTMNGQFFGSKKINV 172
Score = 43.5 bits (101), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 8/63 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDC-----RVCGDPHSVLRFAFVEFADEHGARAA 172
T+YV IDQ +T+E L LFS CG VV+ ++ G+ + FVEF E A +
Sbjct: 13 TIYVGGIDQKVTQEVLWELFSQCGIVVNVHLPKDKITGEHQG---YGFVEFKSEEDADYS 69
Query: 173 LNL 175
+ +
Sbjct: 70 IKI 72
>gi|327263685|ref|XP_003216648.1| PREDICTED: ELAV-like protein 2-like isoform 2 [Anolis carolinensis]
Length = 390
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 25/130 (19%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS---VLRFAFVEFADEHG 168
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D
Sbjct: 64 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKD 122
Query: 169 ARAALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKK 224
A A+N L G L ++V PS +I N +Y + + K
Sbjct: 123 AEKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKT 165
Query: 225 VPQAEVKQFF 234
+ Q E++Q F
Sbjct: 166 MTQKELEQLF 175
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K F
Sbjct: 192 NVYIKNFGEEVDDESLKDLF 211
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
>gi|356562301|ref|XP_003549410.1| PREDICTED: RNA-binding post-transcriptional regulator csx1-like
[Glycine max]
Length = 401
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 31/135 (22%)
Query: 73 FADDNKQS-AIDNFNN-------------NRRRRNNFNQGRKRLSGRAFRAQREDSVRRT 118
F DDN+++ A+ N R+ + QG LS DS T
Sbjct: 215 FGDDNERTQAMTQMNGVYCSSRPMRIGAATPRKSSGHQQGG--LSNGTANQSEADSTNTT 272
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRV-----CGDPHSVLRFAFVEFADEHGARAAL 173
++V +D N+++E L FS G++V ++ CG FV+FA+ + A AL
Sbjct: 273 IFVGGLDPNVSDEDLRQPFSQYGEIVSVKIPVGKGCG---------FVQFANRNNAEEAL 323
Query: 174 N-LGGTMLGYYPVRV 187
L GT +G VR+
Sbjct: 324 QKLNGTTIGKQTVRL 338
>gi|326505260|dbj|BAK03017.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 210
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALNL 175
R+VYV ++D T E + F +CG V + D + FA+VEF ++ + ALNL
Sbjct: 84 RSVYVGNVDYACTPEEVQQHFQACGTVNRVTILTDKFGQPKGFAYVEFLEQEAVQEALNL 143
Query: 176 GGTMLGYYPVRVLPSKTAI 194
+ L ++V P +T +
Sbjct: 144 NESELHGRQIKVSPKRTNV 162
>gi|294933049|ref|XP_002780572.1| Heterogeneous nuclear ribonucleoprotein D0, putative [Perkinsus
marinus ATCC 50983]
gi|239890506|gb|EER12367.1| Heterogeneous nuclear ribonucleoprotein D0, putative [Perkinsus
marinus ATCC 50983]
Length = 540
Score = 43.9 bits (102), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDC-----RVCGDPHSVLRFAFVEFADEHGARAA 172
+V+V ++ ++T+E L+ +F CG + C R G+P FA+++F E A A
Sbjct: 402 SVFVGNLPWSMTQEWLSEVFGDCGSITRCFMPTDRETGNPRG---FAYIDFDTEDSAEKA 458
Query: 173 LNLGGTMLGYYPVRV 187
L GT L +RV
Sbjct: 459 TKLSGTDLEGRQIRV 473
Score = 39.3 bits (90), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 112 EDSVRRT--VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEH 167
++SV R+ V+V ++ ++T+E L +FS CG + + D S + FAF++FADE
Sbjct: 287 QESVERSKSVFVGNLPFSMTKEWLEQIFSWCGDIERVSLPTDWESGKIKGFAFLDFADED 346
Query: 168 GARAALNLGG 177
A A+ G
Sbjct: 347 SAEKAVGKNG 356
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.322 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,187,905,628
Number of Sequences: 23463169
Number of extensions: 172512081
Number of successful extensions: 1020826
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 3773
Number of HSP's that attempted gapping in prelim test: 949623
Number of HSP's gapped (non-prelim): 56123
length of query: 264
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 124
effective length of database: 9,074,351,707
effective search space: 1125219611668
effective search space used: 1125219611668
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 75 (33.5 bits)