BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024698
(264 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JWN|A Chain A, Solution Nmr Structure Of The Protease-Resistent Domain Of
Xenopus Laevis Epabp2
pdb|2JWN|B Chain B, Solution Nmr Structure Of The Protease-Resistent Domain Of
Xenopus Laevis Epabp2
Length = 124
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 53/96 (55%), Gaps = 8/96 (8%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFA 164
++++ +R+VYV ++D T + L FSSCG + + C + G P +A++EFA
Sbjct: 30 EKKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKG---YAYIEFA 86
Query: 165 DEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPT 200
+ + AA+ + T+ ++VLP +T + ++ T
Sbjct: 87 ERNSVDAAVAMDETVFRGRTIKVLPKRTNMPGISST 122
>pdb|3B4D|A Chain A, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|A Chain A, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|B Chain B, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|C Chain C, Crystal Structure Of Human Pabpn1 Rrm
pdb|3B4M|D Chain D, Crystal Structure Of Human Pabpn1 Rrm
Length = 96
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 6 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKESVRT 62
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L L ++ ++V+P +T
Sbjct: 63 SLALDESLFRGRQIKVIPKRT 83
>pdb|3UCG|A Chain A, Crystal Structure Of A Rna Binding Domain Of Hypothetical
Polyadenylate-Binding Protein (Pabpn1) From Homo Sapiens
At 1.95 A Resolution
Length = 89
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 7 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKESVRT 63
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L L ++ ++V+P +T
Sbjct: 64 SLALDESLFRGRQIKVIPKRT 84
>pdb|1CVJ|A Chain A, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|B Chain B, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|C Chain C, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|D Chain D, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|E Chain E, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|F Chain F, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|G Chain G, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|H Chain H, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
Length = 190
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ +++ ++D++I + L FS+ G ++ C+V D + + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 161 VEFADEHGA-RAALNLGGTML 180
V F + A RA + G +L
Sbjct: 143 VHFETQEAAERAIEKMNGMLL 163
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ PVR++ S+ R R+ ++ N+DK + + F
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSIDNKALYDTF 119
Query: 235 EA 236
A
Sbjct: 120 SA 121
>pdb|4F02|A Chain A, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
pdb|4F02|D Chain D, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
Length = 213
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ +++ ++D++I + L FS+ G ++ C+V D + + F
Sbjct: 88 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 147
Query: 161 VEFADEHGA-RAALNLGGTML 180
V F + A RA + G +L
Sbjct: 148 VHFETQEAAERAIEKMNGMLL 168
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D L +A+V F A AL+
Sbjct: 17 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 76
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ PVR++ S+ R R+ ++ N+DK + + F
Sbjct: 77 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSIDNKALYDTF 124
Query: 235 EA 236
A
Sbjct: 125 SA 126
>pdb|2X1F|A Chain A, Structure Of Rna15 Rrm With Bound Rna (Gu)
Length = 96
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFAD-EHGARAAL 173
R VY+ I + TEE++ L S+ G V++ ++ DP + +AF+EF D E A A
Sbjct: 3 RVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVR 62
Query: 174 NLGGTMLG 181
NL G LG
Sbjct: 63 NLNGYQLG 70
>pdb|1FNX|H Chain H, Solution Structure Of The Huc Rbd1-Rbd2 Complexed With The
Au-Rich Element
Length = 174
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAAL 173
+ + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A A+
Sbjct: 4 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 63
Query: 174 N-LGGTMLGYYPVRVL---PSKTAILPVN--PTFLPRSEDEREM 211
N L G L ++V PS +I N + LP++ ++EM
Sbjct: 64 NTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEM 107
>pdb|2X1A|A Chain A, Structure Of Rna15 Rrm With Rna Bound (G)
pdb|2X1B|A Chain A, Structure Of Rna15 Rrm
Length = 97
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFAD-EHGARAAL 173
R VY+ I + TEE++ L S+ G V++ ++ DP + +AF+EF D E A A
Sbjct: 4 RVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVR 63
Query: 174 NLGGTMLG 181
NL G LG
Sbjct: 64 NLNGYQLG 71
>pdb|2KM8|B Chain B, Interdomain Rrm Packing Contributes To Rna Recognition In
The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
Complex
Length = 84
Score = 41.6 bits (96), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFAD-EHGARAAL 173
R VY+ I + TEE++ L S+ G V++ ++ DP + +AF+EF D E A A
Sbjct: 5 RVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVR 64
Query: 174 NLGGTMLG 181
NL G LG
Sbjct: 65 NLNGYQLG 72
>pdb|1FXL|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The C-Fos
Rna
pdb|1G2E|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The Tumor
Necrosis Factor Alpha Rna
Length = 167
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 23/125 (18%)
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAAL 173
+ + V+ + QN+T+E LF S G++ C++ D + L + FV + D A A+
Sbjct: 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 61
Query: 174 N-LGGTMLGYYPVRV---LPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAE 229
N L G L ++V PS +I N +Y + + K + Q E
Sbjct: 62 NTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTMTQKE 104
Query: 230 VKQFF 234
++Q F
Sbjct: 105 LEQLF 109
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD 151
+YVS + + +T++ L LFS G+++ R+ D
Sbjct: 91 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVD 123
>pdb|4F25|A Chain A, Crystal Structure Of The Second Rrm Domain Of Human Pabpc1
At Ph 6.0
pdb|4F26|A Chain A, Crystal Structure Of The Second Rrm Domain Of Human Pabpc1
A Ph 9.0
Length = 115
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 47/105 (44%), Gaps = 12/105 (11%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGA-RAALNLG 176
+++ ++D++I + L FS+ G ++ C+V D + + FV F + A RA +
Sbjct: 7 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 66
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNI 221
G +L V V F R E E E+ +R TN+
Sbjct: 67 GMLLNDRKVFV-----------GRFKSRKEREAELGARAKEFTNV 100
>pdb|3MD3|A Chain A, Crystal Structure Of The First Two Rrm Domains Of Yeast
Poly Binding Protein (Pub1)
Length = 166
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV-LRFAFVEFADEHGARAAL 173
R +YV ++D+ ITE+ L F G + + ++ D ++ + +AFVE+ H A AL
Sbjct: 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIAL 58
>pdb|4ED5|A Chain A, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
pdb|4ED5|B Chain B, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
Length = 177
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 13/111 (11%)
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP---HSVLRFAFVEFADEHGARAA 172
R + V+ + QN+T++ L LFSS G+V ++ D HS L + FV + A A
Sbjct: 2 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHS-LGYGFVNYVTAKDAERA 60
Query: 173 LN-LGGTMLGYYPVRV---LPSKTAILPVN--PTFLPRS---EDEREMCSR 214
+N L G L ++V PS I N + LPR+ +D +M SR
Sbjct: 61 INTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSR 111
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAAL 173
+Y+S + + +T++ + +FS G++++ RV D + L AF+ F A A+
Sbjct: 91 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 147
>pdb|4EGL|A Chain A, Crystal Structure Of Two Tandem Rna Recognition Motifs Of
Human Antigen R
Length = 177
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 13/111 (11%)
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP---HSVLRFAFVEFADEHGARAA 172
R + V+ + QN+T++ L LFSS G+V ++ D HS L + FV + A A
Sbjct: 2 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHS-LGYGFVNYVTAKDAERA 60
Query: 173 LN-LGGTMLGYYPVRV---LPSKTAILPVN--PTFLPRS---EDEREMCSR 214
+N L G L ++V PS I N + LPR+ +D +M SR
Sbjct: 61 INTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSR 111
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAAL 173
+Y+S + + +T++ + +FS G++++ RV D + L AF+ F A A+
Sbjct: 91 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 147
>pdb|1P1T|A Chain A, Nmr Structure Of The N-Terminal Rrm Domain Of Cleavage
Stimulation Factor 64 Kda Subunit
Length = 104
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVC-----GDPHSVLRFAFVEFADEH 167
D R+V+V +I TEE+L +FS G VV R+ G P + F E+ D+
Sbjct: 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKG---YGFCEYQDQE 61
Query: 168 GARAAL-NLGGTMLGYYPVRV 187
A +A+ NL G +RV
Sbjct: 62 TALSAMRNLNGREFSGRALRV 82
>pdb|1D8Z|A Chain A, Solution Structure Of The First Rna-Binding Domain (Rbd1)
Of Hu Antigen C (Huc)
Length = 89
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAAL 173
+ + V+ + QN+T++ LF S G + C++ D + L + FV ++D + A A+
Sbjct: 4 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 63
Query: 174 N-LGGTMLGYYPVRVL---PSKTAI 194
N L G L ++V PS +I
Sbjct: 64 NTLNGLKLQTKTIKVSYARPSSASI 88
>pdb|2K8G|A Chain A, Solution Structure Of Rrm2 Domain Of Pabp1
Length = 95
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGA-RAALNLG 176
+++ ++D++I + L FS+ G ++ C+V D + + FV F + A RA +
Sbjct: 13 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 72
Query: 177 GTML 180
G +L
Sbjct: 73 GMLL 76
>pdb|2DGO|A Chain A, Solution Structure Of The Rna Binding Domain In Cytotoxic
Granule-Associated Rna Binding Protein 1
pdb|2RNE|A Chain A, Solution Structure Of The Second Rna Recognition Motif
(Rrm) Of Tia-1
Length = 115
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAAL-NL 175
V+V D+ IT E + F+ G++ D RV D + FV F ++ A A+ +
Sbjct: 18 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 77
Query: 176 GGTMLGYYPVRV 187
GG LG +R
Sbjct: 78 GGQWLGGRQIRT 89
>pdb|2GO9|A Chain A, Rrm Domains 1 And 2 Of Prp24 From S. Cerevisiae
Length = 161
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGG 177
TV V ++ ++ + ++ F CG ++ V RFA +EFA GA AA+
Sbjct: 6 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTH 65
Query: 178 TMLG 181
++G
Sbjct: 66 KVVG 69
>pdb|2DH7|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Nucleolysin Tiar
Length = 105
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 109 AQREDSVRR-TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFAD 165
Q++D+ V+V D+ IT E + F+ G++ D RV D + FV F +
Sbjct: 7 GQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYN 66
Query: 166 EHGARAAL-NLGGTMLGYYPVRV 187
+ A A+ ++GG LG +R
Sbjct: 67 KLDAENAIVHMGGQWLGGRQIRT 89
>pdb|2GHP|A Chain A, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|B Chain B, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|C Chain C, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|D Chain D, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|E Chain E, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|F Chain F, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|G Chain G, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
pdb|2GHP|H Chain H, Crystal Structure Of The N-Terminal 3 Rna Binding Domains
Of The Yeast Splicing Factor Prp24
Length = 292
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGG 177
TV V ++ ++ + ++ F CG ++ V RFA +EFA GA AA+
Sbjct: 43 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKTH 102
Query: 178 TMLG 181
++G
Sbjct: 103 KVVG 106
>pdb|3NNC|A Chain A, Crystal Structure Of Cugbp1 Rrm12-Rna Complex
Length = 175
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL 173
R +++ I + TE + +FSS GQ+ +CR+ P + R AFV F A+ A+
Sbjct: 96 RKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAI 153
>pdb|2DHS|A Chain A, Solution Structure Of Nucleic Acid Binding Protein
Cugbp1ab And Its Binding Study With Dna And Rna
Length = 187
Score = 35.0 bits (79), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL 173
R +++ I + TE + +FSS GQ+ +CR+ P + R AFV F A+ A+
Sbjct: 108 RKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAI 165
>pdb|2DH8|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain In
Daz-Associated Protein 1
Length = 105
Score = 34.7 bits (78), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEH 167
++V +D + T+E L FS G+VVDC + D + F FV+F D +
Sbjct: 19 LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPN 69
>pdb|2JRS|A Chain A, Solution Nmr Structure Of Caper Rrm2 Domain. Northeast
Structural Genomics Target Hr4730a
Length = 108
Score = 34.3 bits (77), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAAL-NL 175
+YV + NITE+ L G+F G++ ++ D + + F+ F+D A+ AL L
Sbjct: 29 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 88
Query: 176 GGTMLGYYPVRV 187
G L P++V
Sbjct: 89 NGFELAGRPMKV 100
>pdb|1X4B|A Chain A, Solution Structure Of Rrm Domain In Heterogeneous Nuclear
Ribonucleaoproteins A2B1
Length = 116
Score = 34.3 bits (77), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 108 RAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFAD 165
R +RE R +++ + TEE L + G++ DC V DP S F FV F+
Sbjct: 19 RKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSS 78
Query: 166 EHGARAAL 173
AA+
Sbjct: 79 MAEVDAAM 86
>pdb|3NMR|A Chain A, Crystal Structure Of Cugbp1 Rrm12-Rna Complex
pdb|3NNA|A Chain A, Crystal Structure Of Cugbp1 Rrm12-Rna Complex
Length = 175
Score = 34.3 bits (77), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL 173
R +++ I + TE + FSS GQ+ +CR+ P + R AFV F A+ A+
Sbjct: 96 RKLFIGXISKKCTENDIRVXFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAXAQTAI 153
>pdb|3HI9|A Chain A, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
pdb|3HI9|B Chain B, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
pdb|3HI9|C Chain C, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
pdb|3HI9|D Chain D, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
Length = 84
Score = 34.3 bits (77), Expect = 0.076, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP---HSVLRFAFVEFADEHGARAA 172
R + V+ + QN+T++ L LFSS G+V ++ D HS L + FV + A A
Sbjct: 4 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHS-LGYGFVNYVTAKDAERA 62
Query: 173 LN-LGGTMLGYYPVRV 187
+N L G L ++V
Sbjct: 63 INTLNGLRLQSKTIKV 78
>pdb|2CQI|A Chain A, Solution Structure Of The Rna Binding Domain Of
Nucleolysin Tiar
Length = 103
Score = 33.9 bits (76), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEF 163
+D RT+YV ++ +++TE + LFS G C++ + S + FVEF
Sbjct: 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEF 62
>pdb|2D9P|A Chain A, Solution Structure Of Rna Binding Domain 4 In
Polyadenylation Binding Protein 3
Length = 103
Score = 33.9 bits (76), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD-EHGARAALNLGG 177
+YV ++D I +ERL FS G + +V + F FV F+ E +A + G
Sbjct: 18 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG 77
Query: 178 TMLGYYPVRV 187
++ P+ V
Sbjct: 78 RIVATKPLYV 87
>pdb|2DNZ|A Chain A, Solution Structure Of The Second Rna Binding Domain Of Rna
Binding Motif Protein 23
Length = 95
Score = 33.9 bits (76), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAAL-NL 175
+YV + NITE+ L G+F G++ + + D + + F+ F+D AR AL L
Sbjct: 8 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 67
Query: 176 GGTMLGYYPVRV 187
G L P+RV
Sbjct: 68 NGFELAGRPMRV 79
>pdb|2CPF|A Chain A, Solution Structure Of The Penultimate Rna Recognition
Motif Of Hypothetical Rna-Binding Protein Rbm19
Length = 98
Score = 33.9 bits (76), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV-----LRFAFVEFADEHGARAAL 173
+++ +++ + TEE L G+FS G + C + + + F FVE+ A+ AL
Sbjct: 8 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 67
Query: 174 N-LGGTMLGYYPVRVLPSKTAILPVN 198
L G + + + V S+ A P +
Sbjct: 68 KQLQGHTVDGHKLEVRISERATKPAS 93
>pdb|2CQ4|A Chain A, Solution Structure Of Rna Binding Domain In Rna Binding
Motif Protein 23
Length = 114
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALN 174
RTV+ + I L FS+ G+V D R+ D +S A+VEF + A+
Sbjct: 26 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIG 85
Query: 175 LGGTMLGYYPVRVLPSKT 192
L G L P+ V S+
Sbjct: 86 LTGQRLLGVPIIVQASQA 103
>pdb|4FXV|A Chain A, Crystal Structure Of An Elav-Like Protein 1 (Elavl1) From
Homo Sapiens At 1.90 A Resolution
pdb|4FXV|B Chain B, Crystal Structure Of An Elav-Like Protein 1 (Elavl1) From
Homo Sapiens At 1.90 A Resolution
pdb|4FXV|C Chain C, Crystal Structure Of An Elav-Like Protein 1 (Elavl1) From
Homo Sapiens At 1.90 A Resolution
pdb|4FXV|D Chain D, Crystal Structure Of An Elav-Like Protein 1 (Elavl1) From
Homo Sapiens At 1.90 A Resolution
Length = 99
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 121 VSDIDQNITEERLAGLFSSCGQVVDCRVCGDP---HSVLRFAFVEFADEHGARAALN-LG 176
V+ + QN T++ L LFSS G+V ++ D HS L + FV + A A+N L
Sbjct: 24 VNYLPQNXTQDELRSLFSSIGEVESAKLIRDKVAGHS-LGYGFVNYVTAKDAERAINTLN 82
Query: 177 GTMLGYYPVRV 187
G L ++V
Sbjct: 83 GLRLQSKTIKV 93
>pdb|2KI2|A Chain A, Solution Structure Of Ss-Dna Binding Protein 12rnp2
Precursor, Hp0827(O25501_helpy) Form Helicobacter Pylori
Length = 90
Score = 32.3 bits (72), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV--LRFAFVEFADEHGARAALN 174
R +YV ++ + T E++ LFS G+V + ++ D + F FVE +E + A
Sbjct: 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEESVSEAIAK 61
Query: 175 LGGTMLGYYPVRV 187
L T +RV
Sbjct: 62 LDNTDFMGRTIRV 74
>pdb|1HA1|A Chain A, Hnrnp A1 (Rbd1,2) From Homo Sapiens
Length = 184
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 20/138 (14%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALN 174
R +++ + T+E L F G + DC V DP++ F FV +A AA+N
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDER----EMCSRTVYCTNIDKKVPQAEV 230
P K V P ED + + + ++ I + + +
Sbjct: 74 ------------ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
Query: 231 KQFFEAACGGEVRTLPCM 248
+ +FE G++ + M
Sbjct: 122 RDYFEQY--GKIEVIEIM 137
>pdb|1UP1|A Chain A, Up1, The Two Rna-Recognition Motif Domain Of Hnrnp A1
Length = 182
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 20/138 (14%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALN 174
R +++ + T+E L F G + DC V DP++ F FV +A AA+N
Sbjct: 12 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDER----EMCSRTVYCTNIDKKVPQAEV 230
P K V P ED + + + ++ I + + +
Sbjct: 72 ------------ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 119
Query: 231 KQFFEAACGGEVRTLPCM 248
+ +FE G++ + M
Sbjct: 120 RDYFEQY--GKIEVIEIM 135
>pdb|2UP1|A Chain A, Structure Of Up1-Telomeric Dna Complex
pdb|1PO6|A Chain A, Crystal Structure Of Up1 Complexed With
D(Tagg(6mi)ttaggg): A Human Telomeric Repeat Containing
6-Methyl-8-(2-Deoxy-
Beta-Ribofuranosyl)isoxanthopteridine (6mi)
Length = 183
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 20/138 (14%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALN 174
R +++ + T+E L F G + DC V DP++ F FV +A AA+N
Sbjct: 7 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 66
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDER----EMCSRTVYCTNIDKKVPQAEV 230
P K V P ED + + + ++ I + + +
Sbjct: 67 ------------ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 114
Query: 231 KQFFEAACGGEVRTLPCM 248
+ +FE G++ + M
Sbjct: 115 RDYFEQY--GKIEVIEIM 130
>pdb|1L3K|A Chain A, Up1, The Two Rna-Recognition Motif Domain Of Hnrnp A1
pdb|1U1K|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtt 7da
Ggg); A Human Telomeric Repeat Containing
7-Deaza-Adenine
pdb|1U1L|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtt Prn
Ggg); A Human Telomeric Repeat Containing Nebularine
pdb|1U1M|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta 7gu
Gg); A Human Telomeric Repeat Containing 7-Deaza-Guanine
pdb|1U1N|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta (Prn)
Gg); A Human Telomeric Repeat Containing Nebularine
pdb|1U1O|A Chain A, Crystal Structure Of Up1 Complexed With
D(Ttagggttag(Di)g); A Human Telomeric Repeat Containing
Inosine
pdb|1U1P|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta 2pr
Gg); A Human Telomeric Repeat Containing 2-Aminopurine
pdb|1U1Q|A Chain A, Crystal Structure Of Up1 Complexed With
D(Ttagggtta(Di)gg); A Human Telomeric Repeat Containing
Inosine
pdb|1U1R|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggttag(2pr)
G); A Human Telomeric Repeat Containing 2-Aminopurine
Length = 196
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 20/138 (14%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALN 174
R +++ + T+E L F G + DC V DP++ F FV +A AA+N
Sbjct: 14 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 73
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDER----EMCSRTVYCTNIDKKVPQAEV 230
P K V P ED + + + ++ I + + +
Sbjct: 74 ------------ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 121
Query: 231 KQFFEAACGGEVRTLPCM 248
+ +FE G++ + M
Sbjct: 122 RDYFEQY--GKIEVIEIM 137
>pdb|2LYV|A Chain A, Solution Structure Of The Two Rrm Domains Of Hnrnp A1
(up1) Using Segmental Isotope Labeling
Length = 197
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 20/138 (14%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALN 174
R +++ + T+E L F G + DC V DP++ F FV +A AA+N
Sbjct: 15 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 74
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDER----EMCSRTVYCTNIDKKVPQAEV 230
P K V P ED + + + ++ I + + +
Sbjct: 75 ------------ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 122
Query: 231 KQFFEAACGGEVRTLPCM 248
+ +FE G++ + M
Sbjct: 123 RDYFEQY--GKIEVIEIM 138
>pdb|3UWT|A Chain A, Crystal Structure Of A Rna Binding Domain Of Poly-U
Binding Splicing Factor 60kda (Puf60) From Homo Sapiens
At 2.50 A Resolution
Length = 200
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 16/93 (17%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAAL--- 173
+YV+ + Q+++++ + +F + G++ C + DP + + F+E+ ++ A+
Sbjct: 112 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSX 171
Query: 174 ---NLGGTMLGYYPVRVLPSKTAILPVNPTFLP 203
+LGG L RV A+ P P P
Sbjct: 172 NLFDLGGQYL-----RV---GKAVTPPXPLLTP 196
>pdb|1PGZ|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggttag(6-Mi)
G); A Human Telomeric Repeat Containing 6-Methyl-8-(2-
Deoxy-Beta-Ribofuranosyl)isoxanthopteridine (6-Mi)
Length = 195
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 20/138 (14%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALN 174
R +++ + T+E L F G + DC V DP++ F FV +A AA+N
Sbjct: 13 RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 72
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDER----EMCSRTVYCTNIDKKVPQAEV 230
P K V P ED + + + ++ I + + +
Sbjct: 73 ------------ARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHL 120
Query: 231 KQFFEAACGGEVRTLPCM 248
+ +FE G++ + M
Sbjct: 121 RDYFEQY--GKIEVIEIM 136
>pdb|2YWK|A Chain A, Crystal Structure Of Rrm-Domain Derived From Human
Putative Rna-Binding Protein 11
Length = 95
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 107 FRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVC----GDPHSVLRFAFVE 162
F AQ E RTV+V +++ + EE L LF G + +C G P S F FV
Sbjct: 9 FPAQEEAD--RTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKS---FGFVC 63
Query: 163 FADEHGARAALN-LGGTMLGYYPVRV 187
F A+ L G L P+ V
Sbjct: 64 FKHPESVSYAIALLNGIRLYGRPINV 89
>pdb|2KRR|A Chain A, Solution Structure Of The Rbd1,2 Domains From Human
Nucleoli
Length = 180
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 20/102 (19%)
Query: 143 VVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFL 202
VVD R+ +F +V+F AL L G ++V ++ +
Sbjct: 39 VVDVRIG----MTRKFGYVDFESAEDLEKALELTG-------LKVFGNEIKLEK------ 81
Query: 203 PRSED-EREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVR 243
P+ +D ++E +RT+ N+ KV Q E+K+ FE A E+R
Sbjct: 82 PKGKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAA--EIR 121
>pdb|3D2W|A Chain A, Crystal Structure Of Mouse Tdp-43 Rrm2 Domain In Complex
Wit
Length = 89
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
V+V +++T E L F G+VVD + P FAFV FAD+ A++
Sbjct: 14 VFVGRCTEDMTAEELQQFFCQYGEVVDVFI---PKPFRAFAFVTFADDKVAQS 63
>pdb|2KXF|A Chain A, Solution Structure Of The First Two Rrm Domains Of
Fbp-Interacting Repressor (Fir)
pdb|2KXH|A Chain A, Solution Structure Of The First Two Rrm Domains Of Fir In
The Complex With Fbp Nbox Peptide
Length = 199
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/93 (22%), Positives = 44/93 (47%), Gaps = 16/93 (17%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAAL--- 173
+YV+ + Q+++++ + +F + G++ C + DP + + F+E+ ++ A+
Sbjct: 113 IYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 172
Query: 174 ---NLGGTMLGYYPVRVLPSKTAILPVNPTFLP 203
+LGG L RV A+ P P P
Sbjct: 173 NLFDLGGQYL-----RV---GKAVTPPMPLLTP 197
>pdb|2DNP|A Chain A, Solution Structure Of Rna Binding Domain 2 In Rna-Binding
Protein 14
Length = 90
Score = 31.2 bits (69), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL 173
++V ++ T + L LF G+V++C V D +AFV E A+AA+
Sbjct: 12 IFVGNVSAACTSQELRSLFERRGRVIECDVVKD------YAFVHMEKEADAKAAI 60
>pdb|2DNO|A Chain A, Solution Structure Of Rna Binding Domain In Trinucleotide
Repeat Containing 4 Variant
Length = 102
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRF-AFVEFADEHGARAALNL 175
R ++V + + T+E + +F G + +C V P + AFV+F A+AA+N
Sbjct: 13 RKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINT 72
Query: 176 GGTMLGYYPVRVLPSKTAILPVN 198
+ R LP ++ L V
Sbjct: 73 ------LHSSRTLPGASSSLVVK 89
>pdb|1WF0|A Chain A, Solution Structure Of Rrm Domain In Tar Dna-Binding
Protein- 43
Length = 88
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
V+V ++TE+ L FS G V+D + P FAFV FAD+ A++
Sbjct: 8 VFVGRCTGDMTEDELREFFSQYGDVMDVFI---PKPFRAFAFVTFADDQIAQS 57
>pdb|2RS2|A Chain A, 1h, 13c, And 15n Chemical Shift Assignments For Musashi1
Rbd1:r(Guagu) Complex
Length = 109
Score = 30.8 bits (68), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAAL 173
+++ + T+E L F G+V +C V DP + F FV F D+ G L
Sbjct: 28 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL 84
>pdb|4A8X|A Chain A, Structure Of The Core Asap Complex
Length = 88
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQV--VDCRV-CGDPHSVLRFAFVEFADEHGARAALN 174
V++ + +N+T++ + +FS+ G++ +D V PH +A+VEF + A AL
Sbjct: 7 VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALK 65
>pdb|1WF2|A Chain A, Solution Structure Of Rrm Domain In Hnrpc Protein
Length = 98
Score = 30.4 bits (67), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 114 SVRRTVYVSDIDQNITEER-LAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
S+ V++ +++ + ++ + +FS G++V C V H FAFV++ +E ARAA
Sbjct: 13 SMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV----HK--GFAFVQYVNERNARAA 66
Query: 173 L 173
+
Sbjct: 67 V 67
>pdb|1X4G|A Chain A, Solution Structure Of Rrm Domain In Nucleolysin Tiar
Length = 109
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 11/101 (10%)
Query: 98 GRKRLSGRAFRAQREDSVRR------TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD 151
G SG + + ED V + TVY I +T++ + FS GQ+++ RV +
Sbjct: 1 GSSGSSGNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE 60
Query: 152 PHSVLRFAFVEFAD-EHGARAALNLGGTMLGYYPVRVLPSK 191
++FV F+ E A A +++ GT + + V+ K
Sbjct: 61 K----GYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97
>pdb|2E5H|A Chain A, Solution Structure Of Rna Binding Domain In Zinc Finger
Cchc-Type And Rna Binding Motif 1
Length = 94
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGAR 170
+ TVYVS++ ++T L +FS G+VV + D + AF+ F D+ A+
Sbjct: 16 KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQ 72
>pdb|2LCW|A Chain A, Solution Structure Of FusTLS RRM DOMAIN
Length = 116
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 110 QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRF----------A 159
++++S T++V + +N+T E +A F G + + G P L A
Sbjct: 1 EQDNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEA 60
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRV 187
V F D A+AA++ G P++V
Sbjct: 61 TVSFDDPPSAKAAIDWFDGKEFSGNPIKV 89
>pdb|2PBQ|A Chain A, Crystal Structure Of Molybdenum Cofactor Biosynthesis
(Aq_061) From Aquifex Aeolicus Vf5
pdb|2PBQ|B Chain B, Crystal Structure Of Molybdenum Cofactor Biosynthesis
(Aq_061) From Aquifex Aeolicus Vf5
pdb|2PBQ|C Chain C, Crystal Structure Of Molybdenum Cofactor Biosynthesis
(Aq_061) From Aquifex Aeolicus Vf5
pdb|2QQ1|A Chain A, Crystal Structure Of Molybdenum Cofactor Biosynthesis
(Aq_061) Other Form From Aquifex Aeolicus Vf5
pdb|2QQ1|B Chain B, Crystal Structure Of Molybdenum Cofactor Biosynthesis
(Aq_061) Other Form From Aquifex Aeolicus Vf5
pdb|2QQ1|C Chain C, Crystal Structure Of Molybdenum Cofactor Biosynthesis
(Aq_061) Other Form From Aquifex Aeolicus Vf5
pdb|2QQ1|D Chain D, Crystal Structure Of Molybdenum Cofactor Biosynthesis
(Aq_061) Other Form From Aquifex Aeolicus Vf5
pdb|2QQ1|E Chain E, Crystal Structure Of Molybdenum Cofactor Biosynthesis
(Aq_061) Other Form From Aquifex Aeolicus Vf5
pdb|2QQ1|F Chain F, Crystal Structure Of Molybdenum Cofactor Biosynthesis
(Aq_061) Other Form From Aquifex Aeolicus Vf5
pdb|3MCI|A Chain A, Crystal Structure Of Molybdenum Cofactor Biosynthesis
(Aq_061) From Aquifex Aeolicus Vf5
pdb|3MCI|B Chain B, Crystal Structure Of Molybdenum Cofactor Biosynthesis
(Aq_061) From Aquifex Aeolicus Vf5
pdb|3MCI|C Chain C, Crystal Structure Of Molybdenum Cofactor Biosynthesis
(Aq_061) From Aquifex Aeolicus Vf5
pdb|3MCJ|A Chain A, Crystal Structure Of Molybdenum Cofactor Biosynthesis
(Aq_061) Other Form From Aquifex Aeolicus Vf5
pdb|3MCJ|B Chain B, Crystal Structure Of Molybdenum Cofactor Biosynthesis
(Aq_061) Other Form From Aquifex Aeolicus Vf5
pdb|3MCJ|C Chain C, Crystal Structure Of Molybdenum Cofactor Biosynthesis
(Aq_061) Other Form From Aquifex Aeolicus Vf5
pdb|3MCJ|D Chain D, Crystal Structure Of Molybdenum Cofactor Biosynthesis
(Aq_061) Other Form From Aquifex Aeolicus Vf5
pdb|3MCJ|E Chain E, Crystal Structure Of Molybdenum Cofactor Biosynthesis
(Aq_061) Other Form From Aquifex Aeolicus Vf5
pdb|3MCJ|F Chain F, Crystal Structure Of Molybdenum Cofactor Biosynthesis
(Aq_061) Other Form From Aquifex Aeolicus Vf5
Length = 178
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 144 VDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192
V+ RV D ++ +E ADE G L GGT G P V P T
Sbjct: 44 VEYRVIPDERDLIEKTLIELADEKGCSLILTTGGT--GPAPRDVTPEAT 90
>pdb|2CPE|A Chain A, Solution Structure Of The Rna Recognition Motif Of Ewing
Sarcoma(Ews) Protein
Length = 113
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP 152
EDS +YV ++ ++T + LA F CG V + G P
Sbjct: 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQP 51
>pdb|3S7R|A Chain A, Crystal Structure Of A Heterogeneous Nuclear
Ribonucleoprotein AB (Hnrpab) From Homo Sapiens At 2.15
A Resolution
pdb|3S7R|B Chain B, Crystal Structure Of A Heterogeneous Nuclear
Ribonucleoprotein AB (Hnrpab) From Homo Sapiens At 2.15
A Resolution
Length = 87
Score = 29.3 bits (64), Expect = 2.6, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 120 YVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAALN 174
+V + + +++ L F+ G+VVDC + DP++ F F+ F D L+
Sbjct: 15 FVGGLSWDTSKKDLKDYFTKFGEVVDCTIKXDPNTGRSRGFGFILFKDAASVEKVLD 71
>pdb|1UAW|A Chain A, Solution Structure Of The N-Terminal Rna-Binding Domain Of
Mouse Musashi1
Length = 77
Score = 28.9 bits (63), Expect = 3.1, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAAL 173
+++ + T+E L F G+V +C V DP + F FV F D+ G L
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL 59
>pdb|1WF1|A Chain A, Solution Structure Of Rrm Domain In Rna-Binding Protein
Np_057951
Length = 110
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 114 SVRRTVYVSDIDQNITEER-LAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
S+ V++ +++ + ++ + +FS G+V C V H +AFV++++E ARAA
Sbjct: 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV----HK--GYAFVQYSNERHARAA 78
Query: 173 L 173
+
Sbjct: 79 V 79
>pdb|2QFJ|A Chain A, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
pdb|2QFJ|B Chain B, Crystal Structure Of First Two Rrm Domains Of Fir Bound To
Ssdna From A Portion Of Fuse
Length = 216
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 16/93 (17%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAAL--- 173
+YV+ + Q+++++ + +F + G++ + DP + + F+E+ ++ A+
Sbjct: 128 IYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 187
Query: 174 ---NLGGTMLGYYPVRVLPSKTAILPVNPTFLP 203
+LGG L RV A+ P P P
Sbjct: 188 NLFDLGGQYL-----RV---GKAVTPPMPLLTP 212
>pdb|1B7F|A Chain A, Sxl-Lethal ProteinRNA COMPLEX
pdb|1B7F|B Chain B, Sxl-Lethal ProteinRNA COMPLEX
Length = 168
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 8/80 (10%)
Query: 100 KRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDC-----RVCGDPHS 154
KRL R E +YV+++ + IT+++L +F G +V ++ G P
Sbjct: 73 KRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRG 132
Query: 155 VLRFAFVEFADEHGARAALN 174
V AFV + A+ A++
Sbjct: 133 V---AFVRYNKREEAQEAIS 149
>pdb|3SXL|A Chain A, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
pdb|3SXL|B Chain B, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
pdb|3SXL|C Chain C, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
Length = 184
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 100 KRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDC-----RVCGDPHS 154
KRL R E +YV+++ + IT+++L +F G +V ++ G P
Sbjct: 84 KRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRG 143
Query: 155 VLRFAFVEFADEHGARAAL 173
V AFV + A+ A+
Sbjct: 144 V---AFVRYNKREEAQEAI 159
>pdb|2DNQ|A Chain A, Solution Structure Of Rna Binding Domain 1 In Rna-Binding
Protein 30
Length = 90
Score = 27.7 bits (60), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/55 (21%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL 173
+++ ++ + TE+ + LF G+V++C + + + FV D+ A A+
Sbjct: 11 LFIGNLPREATEQEIRSLFEQYGKVLECDI------IKNYGFVHIEDKTAAEDAI 59
>pdb|2YOO|A Chain A, Cholest-4-en-3-one Bound Structure Of Cyp142 From
Mycobacterium Smegmatis
pdb|2YOO|B Chain B, Cholest-4-en-3-one Bound Structure Of Cyp142 From
Mycobacterium Smegmatis
pdb|2YOO|C Chain C, Cholest-4-en-3-one Bound Structure Of Cyp142 From
Mycobacterium Smegmatis
pdb|2YOO|D Chain D, Cholest-4-en-3-one Bound Structure Of Cyp142 From
Mycobacterium Smegmatis
pdb|3ZBY|A Chain A, Ligand-free Structure Of Cyp142 From Mycobacterium
Smegmatis
pdb|3ZBY|B Chain B, Ligand-free Structure Of Cyp142 From Mycobacterium
Smegmatis
pdb|3ZBY|C Chain C, Ligand-free Structure Of Cyp142 From Mycobacterium
Smegmatis
pdb|3ZBY|D Chain D, Ligand-free Structure Of Cyp142 From Mycobacterium
Smegmatis
pdb|3ZBY|E Chain E, Ligand-free Structure Of Cyp142 From Mycobacterium
Smegmatis
pdb|3ZBY|F Chain F, Ligand-free Structure Of Cyp142 From Mycobacterium
Smegmatis
Length = 407
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 33 EFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQS 80
E +QKL+D F K+ + TD FSV+ N+ + + S
Sbjct: 172 EAAIQKLMDTFAAYTEFTKDVITKRRAEPTDDLFSVLVNSEVEGQRMS 219
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,152,767
Number of Sequences: 62578
Number of extensions: 223301
Number of successful extensions: 668
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 612
Number of HSP's gapped (non-prelim): 80
length of query: 264
length of database: 14,973,337
effective HSP length: 97
effective length of query: 167
effective length of database: 8,903,271
effective search space: 1486846257
effective search space used: 1486846257
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)