BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024698
(264 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8WXA9|SREK1_HUMAN Splicing regulatory glutamine/lysine-rich protein 1 OS=Homo sapiens
GN=SREK1 PE=1 SV=1
Length = 508
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 62 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 121
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 122 ALAFNGVMFGDRPLKINHSNNAIV 145
>sp|Q9JKL7|SREK1_RAT Splicing regulatory glutamine/lysine-rich protein 1 OS=Rattus
norvegicus GN=Srek1 PE=1 SV=1
Length = 494
Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 65 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 124
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 125 ALAFNGVMFGDRPLKINHSNNAIV 148
>sp|Q8BZX4|SREK1_MOUSE Splicing regulatory glutamine/lysine-rich protein 1 OS=Mus musculus
GN=Srek1 PE=2 SV=1
Length = 494
Score = 62.8 bits (151), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 113 DSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171
D +RRTVYV +++ Q T ++L F G+V R+ GD RFAFVEFAD++
Sbjct: 65 DEIRRTVYVGNLNSQTTTADQLLEFFKQVGEVKFVRMAGDETQPTRFAFVEFADQNSVPR 124
Query: 172 ALNLGGTMLGYYPVRVLPSKTAIL 195
AL G M G P+++ S AI+
Sbjct: 125 ALAFNGVMFGDRPLKINHSNNAIV 148
>sp|O14327|PAB2_SCHPO Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pab2 PE=3 SV=1
Length = 166
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 105 RAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFA 159
A R +E ++VYV ++D ++T E L F+SCG V + C + G P FA
Sbjct: 43 EALRNDKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKG---FA 99
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAI 194
++EF++ AL L G+ML P++V P +T +
Sbjct: 100 YIEFSEPSLVPNALLLNGSMLHERPLKVTPKRTNV 134
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 51.2 bits (121), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + D HG RA
Sbjct: 43 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDE 102
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 103 LNYTLIKGKPCRIMWSQ 119
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 14/138 (10%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D V + +
Sbjct: 114 RIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYG 173
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A A+ ML L K + + + R EM + +Y
Sbjct: 174 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNIY 226
Query: 218 CTNIDKKVPQAEVKQFFE 235
NID +V E ++ FE
Sbjct: 227 IKNIDPEVEDEEFRKLFE 244
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL 173
+Y+ +ID + +E LF G++ + D R F FV F+ A+AA+
Sbjct: 225 IYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAV 280
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 22/142 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+RR+ V++ ++D+ I + + FS+ G ++ C+V D + +
Sbjct: 74 RIMWSQRDPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYG 133
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV F E A +++ + G +L V V F+PR E E+E+ +
Sbjct: 134 FVHFETEEAANTSIDKVNGMLLNGKKVYV-----------GKFIPRKEREKELGEKAKLF 182
Query: 216 --VYCTNIDKKVPQAEVKQFFE 235
VY N + ++K+FFE
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFE 204
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ Q++ E L FSS G V+ RVC D L +A+V F A AL+
Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
+ ++ P+R++ S+ R R V+ N+D+ + + F
Sbjct: 63 MNFDLVRNKPIRIMWSQ------------RDPSLRRSGVGNVFIKNLDRAIDNKAIYDTF 110
Query: 235 EA 236
A
Sbjct: 111 SA 112
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 107 FRAQREDSV-RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEF- 163
+ +R +SV +YV ++D I ++RL FS G + +V D + F FV F
Sbjct: 276 LKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFN 335
Query: 164 ADEHGARAALNLGGTMLGYYPVRV 187
A A L G ++G P+ V
Sbjct: 336 AASEATCAVTELNGRVVGSKPLYV 359
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 109 AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEF-AD 165
AQ+ ++YV ++D ++TE L LFSS GQV RVC D L +A+V + +
Sbjct: 40 AQQAHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSS 99
Query: 166 EHGARAALNLGGTMLGYYPVRVLPSK 191
E G +A L T++ P R++ S+
Sbjct: 100 EDGEKALEELNYTVIKGKPCRIMWSQ 125
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 15/104 (14%)
Query: 90 RRRNNFNQGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV- 148
R+ N + Q + AF D++ T++V +D ++T+E L FS G++V ++
Sbjct: 279 RKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIP 338
Query: 149 ----CGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRV 187
CG FV+F + A AL L GT++G VR+
Sbjct: 339 VGKGCG---------FVQFVNRPNAEEALEKLNGTVIGKQTVRL 373
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 14/137 (10%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+R+ +Y+ ++ I + L FS+ G ++ C+V D + V R F
Sbjct: 110 RIMWSQRDPSLRKKGSGNIYIKNLHPAIDNKSLHETFSTFGNILSCKVATDENGVSRGFG 169
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV F +E AR A+ ML + + + ++ + R E+ ++ VY
Sbjct: 170 FVHFENESDARDAIEAVDGML-------MNDQEVYVALHVSKKDRQSKLEEVKAKFTNVY 222
Query: 218 CTNIDKKVPQAEVKQFF 234
NID++ Q E ++ F
Sbjct: 223 VKNIDQETSQEEFEELF 239
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV +++ ++E L +FS G V RVC D ++ L +A+V F D E G +A
Sbjct: 39 SLYVGELEPTVSEALLYDIFSPIGSVSSIRVCRDAITNTSLGYAYVNFHDHEAGPKAIEQ 98
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 99 LNYTLIKGKPCRIMWSQ 115
Score = 37.7 bits (86), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN 174
VYV +IDQ ++E LF G++ + D LR F FV F D A A++
Sbjct: 221 VYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVD 277
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 15/122 (12%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LF+S G V RVC D + L +A+V F + E G +A
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFF 234
L T++ P R++ S+ R R+M + V+ N+D + + F
Sbjct: 141 LNYTLIKGRPCRIMWSQ------------RDPSLRKMGTGNVFIKNLDPAIDNKALHDTF 188
Query: 235 EA 236
A
Sbjct: 189 SA 190
Score = 34.7 bits (78), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN 174
VY+ ++D ITE+ + LF G++ + D + R F FV +A+ A+ A++
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVD 319
Score = 34.7 bits (78), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 73/184 (39%), Gaps = 29/184 (15%)
Query: 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDN-KQSAI 82
N+ K ++E T Q+ D+F + + S D N+A+ Q A+
Sbjct: 262 NVYIKNLDTEITEQEFSDLFGQFGEITSL---SLVKDQNDKPRGFGFVNYANHECAQKAV 318
Query: 83 DNFNNNRRRRNNFNQGRKRLSGRAFRA-QREDSVRR----------------TVYVSDID 125
D N+ + G+K GRA + +RE+ +R+ +++ ++
Sbjct: 319 DELNDKEYK------GKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQ 372
Query: 126 QNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEF-ADEHGARAALNLGGTMLGYY 183
+ +ERL FS+ G + ++ D + F FV + E +A + ML
Sbjct: 373 DEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGK 432
Query: 184 PVRV 187
P+ V
Sbjct: 433 PLYV 436
Score = 34.7 bits (78), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ S+R+ V++ ++D I + L FS+ G+++ C+V D + +
Sbjct: 152 RIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYG 211
Query: 160 FVEFADEHGARAALNLGGTML 180
FV F A AA+ ML
Sbjct: 212 FVHFDSVESANAAIEHVNGML 232
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 52 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 111
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 112 LNYTLIKGKPCRIMWSQ 128
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN 174
+Y+ +ID ++TEE +F G++ + DP R F FV ++ A+AA++
Sbjct: 234 IYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVD 290
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 14/138 (10%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + +
Sbjct: 123 RIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 182
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSE--DEREMCSRTVY 217
FV + A A+ ML L K + + + R DE + +Y
Sbjct: 183 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFDEMKANFTNIY 235
Query: 218 CTNIDKKVPQAEVKQFFE 235
NID V + E ++ FE
Sbjct: 236 IKNIDPDVTEEEFRKIFE 253
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ SVRR+ +++ ++D++I + L FSS G +V C+V D + +
Sbjct: 108 RVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYG 167
Query: 160 FVEFADEHGARAAL-NLGGTMLGYYPVRVLP 189
FV++A+E A+ A+ L G +L V V P
Sbjct: 168 FVQYANEESAQKAIEKLNGMLLNDKQVYVGP 198
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 67/135 (49%), Gaps = 14/135 (10%)
Query: 66 FSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGR-KRLSGRA--FRAQREDSVRRT---- 118
F +N ADD + A+++ N ++ + GR ++ S R R + E +++
Sbjct: 257 FGFVNFENADDAAR-AVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKF 315
Query: 119 ----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFA-FVEFADEHGARAAL 173
+YV ++D +I++E+L +FS G V +V DP+ + + FV FA A A+
Sbjct: 316 QSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAM 375
Query: 174 N-LGGTMLGYYPVRV 187
+ L G M+ P+ V
Sbjct: 376 SQLSGKMIESKPLYV 390
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFAD-EHGARAALN 174
++YV D+D N+T+ +L F G VV RVC D L + +V F + + ARA
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 175 LGGTMLGYYPVRVL 188
L L P+RV+
Sbjct: 97 LNYIPLYGKPIRVM 110
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 50 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 109
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 110 LNYTLIKGKPCRIMWSQ 126
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN 174
VY+ +IDQ++TEE LF G++ + D R F FV F+ A+AA++
Sbjct: 232 VYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVD 288
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 14/138 (10%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + +
Sbjct: 121 RIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 180
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A A+ ML L K + + + R EM + VY
Sbjct: 181 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNVY 233
Query: 218 CTNIDKKVPQAEVKQFFE 235
NID+ V + E ++ FE
Sbjct: 234 IKNIDQDVTEEEFRELFE 251
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 55 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 115 LNYTLIKGKPCRIMWSQ 131
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 14/138 (10%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + +
Sbjct: 126 RIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 185
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A A+ ML L K + + + R EM + VY
Sbjct: 186 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNVY 238
Query: 218 CTNIDKKVPQAEVKQFFE 235
N+D ++ E ++ FE
Sbjct: 239 IKNLDSEIDDDEFRKMFE 256
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 111 REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHG 168
+ ++V ++YV D+D +++E L +FS G V RVC D + L +A+V F D
Sbjct: 29 QSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDA 88
Query: 169 ARAALNLGGTMLGYYPVR 186
A+ A+ L + P++
Sbjct: 89 AKTAIE----KLNFTPIK 102
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 113 LNYTLIKGKPCRIMWSQ 129
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN 174
VY+ +IDQ +T+E +F G++ + D R F FV F+ A+AA++
Sbjct: 235 VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVD 291
Score = 35.0 bits (79), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 14/138 (10%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + +
Sbjct: 124 RIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 183
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A A+ ML L K + + + R EM + VY
Sbjct: 184 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNVY 236
Query: 218 CTNIDKKVPQAEVKQFFE 235
NID++V E ++ FE
Sbjct: 237 IKNIDQEVTDEEFRKMFE 254
Score = 35.0 bits (79), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 25/145 (17%)
Query: 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAID 83
N+ K + E T ++ MF K + S + F +N + D+ Q+A+D
Sbjct: 234 NVYIKNIDQEVTDEEFRKMFEKFGEITSATL-SRDQEGKSRGFGFVNFS-THDSAQAAVD 291
Query: 84 NFNNNRRRRNNFNQGRKRLSGRAFRA-QREDSVRRT----------------VYVSDIDQ 126
N+ + G+K GRA + +RE+ +R+ +YV ++
Sbjct: 292 EMNDKEIK------GQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 345
Query: 127 NITEERLAGLFSSCGQVVDCRVCGD 151
++ +E+L LFS G + +V D
Sbjct: 346 DVDDEKLRELFSPFGTITSAKVMRD 370
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 113 LNYTLIKGKPCRIMWSQ 129
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN 174
VY+ +IDQ +T+E +F G++ + D R F FV F+ A+AA++
Sbjct: 235 VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVD 291
Score = 35.0 bits (79), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 33/145 (22%), Positives = 61/145 (42%), Gaps = 25/145 (17%)
Query: 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAID 83
N+ K + E T ++ MF K + S + F +N + D+ Q+A+D
Sbjct: 234 NVYIKNIDQEVTDEEFRKMFEKFGEITSATL-SRDQEGKSRGFGFVNFS-THDSAQAAVD 291
Query: 84 NFNNNRRRRNNFNQGRKRLSGRAFRA-QREDSVRRT----------------VYVSDIDQ 126
N+ + G+K GRA + +RE+ +R+ +YV ++
Sbjct: 292 EMNDKEIK------GQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 345
Query: 127 NITEERLAGLFSSCGQVVDCRVCGD 151
++ +E+L LFS G + +V D
Sbjct: 346 DVDDEKLRELFSPFGTITSAKVMRD 370
Score = 35.0 bits (79), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 14/138 (10%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + +
Sbjct: 124 RIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 183
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A A+ ML L K + + + R EM + VY
Sbjct: 184 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNVY 236
Query: 218 CTNIDKKVPQAEVKQFFE 235
NID++V E ++ FE
Sbjct: 237 IKNIDQEVTDEEFRKMFE 254
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 49 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 108
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 109 LNYTLIKGKPCRIMWSQ 125
Score = 36.2 bits (82), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 14/138 (10%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + +
Sbjct: 120 RIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 179
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A A+ ML L K + + + R EM + VY
Sbjct: 180 FVHYETAEAANNAIKHVNGML-------LNDKKVFVGHHISKKDRQSKFEEMKANFTNVY 232
Query: 218 CTNIDKKVPQAEVKQFFE 235
N+D+++ + E +Q FE
Sbjct: 233 IKNLDQEISEEEFRQMFE 250
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN 174
VY+ ++DQ I+EE +F G++ + D R F FV ++ A+AA++
Sbjct: 231 VYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVD 287
Score = 34.7 bits (78), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 30/145 (20%)
Query: 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAID 83
NL+ + SE EF MF K + S + F +N + D+ Q+A+D
Sbjct: 235 NLDQEISEEEFR-----QMFEKFGEITSATL-SRDQEGKSRGFGFVNYS-THDSAQAAVD 287
Query: 84 NFNNNRRRRNNFNQGRKRLSGRAFRA-QREDSVRRT----------------VYVSDIDQ 126
N+ + G+K GRA + +RE+ +R+ +YV ++
Sbjct: 288 EMNDKEVK------GQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTD 341
Query: 127 NITEERLAGLFSSCGQVVDCRVCGD 151
+I +E+L +F+ G + +V D
Sbjct: 342 DIDDEKLREMFAPYGTITSAKVMRD 366
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D ++TE L LFSS GQV RVC D L +A+V + + G RA +
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 175 LGGTMLGYYPVRVLPSK 191
L T++ P R++ S+
Sbjct: 116 LNYTLIKGRPCRIMWSQ 132
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--FAFVEFADEHGARAAL 173
VYV +IDQ+ TEE LF G++ + D S F FV F A AA+
Sbjct: 238 VYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAV 294
Score = 34.7 bits (78), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 14/138 (10%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R +QR+ ++R+T V++ ++D I + L F++ G ++ C+V D + +
Sbjct: 127 RIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYG 186
Query: 160 FVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSR--TVY 217
FV + A+ A+ ML L K + + R EM + VY
Sbjct: 187 FVHYETAEAAQNAIKHVNGML-------LNDKKVFVGHHIAKKDRQSKFEEMKANFTNVY 239
Query: 218 CTNIDKKVPQAEVKQFFE 235
NID+ + E + FE
Sbjct: 240 VKNIDQDTTEEEFRDLFE 257
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 62/145 (42%), Gaps = 24/145 (16%)
Query: 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAID 83
N+ K + + T ++ D+F K + F +N + DN +A++
Sbjct: 237 NVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFT-SHDNAAAAVE 295
Query: 84 NFNNNRRRRNNFNQGRKRLSGRAFRA-QREDSVRRT----------------VYVSDIDQ 126
N+ +F +G+K GRA + +RE+ +R+ +Y+ ++
Sbjct: 296 ALNDK-----DF-KGQKLYVGRAQKKHEREEELRKQYEAARIEKASKYQGVNLYIKNLSD 349
Query: 127 NITEERLAGLFSSCGQVVDCRVCGD 151
+I +E+L LFSS G + +V D
Sbjct: 350 DIDDEKLRELFSSYGTITSAKVMRD 374
>sp|Q09295|YQO4_CAEEL Putative RNA-binding protein EEED8.4 OS=Caenorhabditis elegans
GN=EEED8.4 PE=4 SV=2
Length = 191
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 96 NQGRKRLSGRAFRAQREDSVR----RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD 151
N+ K L A+ E+ + ++V++ ++D N T E + F CGQ+V + D
Sbjct: 30 NKMAKHLESAAYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKD 89
Query: 152 PHSVLR--FAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAI 194
+ + FA++EF D AL + G++ P+ V +T I
Sbjct: 90 KFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNI 134
>sp|Q28165|PABP2_BOVIN Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3
Length = 306
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 172 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKESVRT 228
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L L ++ ++V+P +T
Sbjct: 229 SLALDESLFRGRQIKVIPKRT 249
>sp|Q86U42|PABP2_HUMAN Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3
Length = 306
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 172 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKESVRT 228
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L L ++ ++V+P +T
Sbjct: 229 SLALDESLFRGRQIKVIPKRT 249
>sp|Q6TY21|EPA2B_XENLA Embryonic polyadenylate-binding protein 2-B OS=Xenopus laevis
GN=Pabpn1l-b PE=1 SV=1
Length = 218
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Query: 116 RRTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGAR 170
+R+VYV ++D T + L FSSCG + + C + G P +A++EFA+ +
Sbjct: 92 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKG---YAYIEFAERNSVD 148
Query: 171 AALNLGGTMLGYYPVRVLPSKTAILPVNPT 200
AA+ + T+ ++VLP +T + ++ T
Sbjct: 149 AAVAMDETVFRGRTIKVLPKRTNMPGISST 178
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 15/136 (11%)
Query: 111 REDSVRRTVYVSDIDQNIT----EERLAGLFSSC--GQVVDCRVCGDPHSVLRFAFVEFA 164
R+DS T++V D+ ++T +E ++SS +VV R+ G + FV+FA
Sbjct: 170 RDDSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKG---YGFVKFA 226
Query: 165 DE-HGARAALNLGGTMLGYYPVRVLPS---KTAILPVNPTFL-PR-SEDEREMCSRTVYC 218
DE RA + G + P+R+ P+ K P T+ P+ ++ E + + T++
Sbjct: 227 DESEQLRAMTEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQGESDPNNTTIFV 286
Query: 219 TNIDKKVPQAEVKQFF 234
+D V + ++Q F
Sbjct: 287 GGLDPTVAEEHLRQVF 302
Score = 39.7 bits (91), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLG 176
T++V +D + EE L +FS G++V ++ R FV+F A AL +L
Sbjct: 283 TIFVGGLDPTVAEEHLRQVFSPYGELVHVKIVAG----KRCGFVQFGTRASAEQALSSLN 338
Query: 177 GTMLGYYPVRV 187
GT LG +R+
Sbjct: 339 GTQLGGQSIRL 349
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 16/122 (13%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ +R++ +++ +++ +I + L FS+ G ++ C+V D H F F
Sbjct: 83 RIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGF 142
Query: 161 VEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCT 219
V F A+ A+N + G +L V V F R E E E+ +R + T
Sbjct: 143 VHFETHEAAQQAINTMNGMLLNDRKVFV-----------GHFKSRREREAELGARALEFT 191
Query: 220 NI 221
NI
Sbjct: 192 NI 193
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D + L +A++ F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSK 191
+ ML P+R++ S+
Sbjct: 72 MNFEMLKGQPIRIMWSQ 88
Score = 38.5 bits (88), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 105 RAFRAQREDSVRR----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R F ++D +RR +YV ++D +I +++L FS G + +V + F F
Sbjct: 278 RRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGF 337
Query: 161 VEFAD-EHGARAALNLGGTMLGYYPVRV 187
V F+ E +A + G ++G P+ V
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGTKPLYV 365
>sp|Q8CCS6|PABP2_MOUSE Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3
Length = 302
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 168 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG---FAYIEFSDKESVRT 224
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L L ++ ++V+P +T
Sbjct: 225 SLALDESLFRGRQIKVIPKRT 245
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 97 QGRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HS 154
Q ++ + +Q ++ ++YV D++ +++E L +FS G V RVC D +
Sbjct: 18 QDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKT 77
Query: 155 VLRFAFVEFADEHGARAALNLGGTMLGYYPVR 186
L +A+V F D R A+ L Y P++
Sbjct: 78 SLGYAYVNFNDHEAGRKAIE----QLNYTPIK 105
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ V++ ++D++I + L FS+ G ++ C+V D + +AF
Sbjct: 83 RIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAF 142
Query: 161 VEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A+ + G +L V V F R E E E+ ++
Sbjct: 143 VHFETQEAADKAIEKMNGMLLNDRKVFV-----------GRFKSRKEREAELGAKAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N ++V +K+ F
Sbjct: 192 NVYIKNFGEEVDDESLKELF 211
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G V+ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ P+R++ S+ R R+ V+ N+DK +
Sbjct: 72 MNFDVIKGKPIRIMWSQ------------RDPSLRKSGVGNVFIKNLDKSI 110
Score = 35.8 bits (81), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 105 RAFRAQREDSVRR----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R F +++ + R +Y+ ++D I +E+L FS G + +V + F F
Sbjct: 278 RKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGF 337
Query: 161 VEFAD-EHGARAALNLGGTMLGYYPVRV 187
V F+ E +A + G ++G P+ V
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVGSKPLYV 365
Score = 31.6 bits (70), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL 173
VY+ + + + +E L LFS G+ + +V DP+ + F FV + A A+
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAV 248
>sp|Q9USY2|YOW4_SCHPO Uncharacterized RNA-binding protein C1861.04c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC1861.04c PE=4 SV=1
Length = 1014
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 58/122 (47%), Gaps = 10/122 (8%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSV-LRFAFVEFADEHGARAAL 173
V +YV++ E + LFS+ G VVD R ++ RF +V+ A AL
Sbjct: 664 VDTNLYVTNFPPTYDELDITKLFSAYGNVVDVRFPSLRYNTNRRFCYVQMRKPDEAHNAL 723
Query: 174 NLGGTMLG-YYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
L +L YP++V S P+ T PRS E R +Y TNID KV + +V+
Sbjct: 724 QLHKKLLEEKYPIQVFISD----PLRRT--PRSGAVYE--GRELYVTNIDFKVNEKDVET 775
Query: 233 FF 234
FF
Sbjct: 776 FF 777
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 20/140 (14%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLG 176
R +YV++ID + E+ + F GQV R+ + F +V A AL+
Sbjct: 757 RELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQDAENALSAA 816
Query: 177 GTMLGYYPVRVLPS-------KTAILPVNPTFLPRSEDERE-------------MCSRTV 216
G LG + V+ S KT + + L +S + E + S+++
Sbjct: 817 GKQLGNRVLNVVLSKPRESLEKTRVSSNDNRTLAKSFETTESNKMSTPKKSFEQIKSKSL 876
Query: 217 YCTNIDKKVPQAEVKQFFEA 236
TN+D V +A ++ FE+
Sbjct: 877 GVTNVDGTVNEARLRSLFES 896
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAA 172
TV V+++ +I+E L F CG ++ + D ++ A +EF++ AA
Sbjct: 591 TVLVTNLPSDISENELKIFFKDCGNIIRIFILEDNQKDVKVAQIEFSETSEVLAA 645
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ +R++ V++ ++D++I + L FS+ G ++ C+V D H
Sbjct: 77 IKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG 136
Query: 155 VLRFAFVEFADEHGA-RAALNLGGTML 180
+ FV F + A RA + G +L
Sbjct: 137 SRGYGFVHFETQEAANRAIQTMNGMLL 163
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D L +A++ F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSK 191
+ ++ P+R++ S+
Sbjct: 72 MNFEVIKGRPIRIMWSQ 88
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 105 RAFRAQREDSVRR----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R F +++ + R +YV ++D I ++RL FS G + +V + F F
Sbjct: 278 RKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGF 337
Query: 161 VEFAD-EHGARAALNLGGTMLGYYPVRV 187
V F+ E +A + G ++ P+ V
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVSTKPLYV 365
>sp|Q804A5|EPA2A_XENLA Embryonic polyadenylate-binding protein 2-A OS=Xenopus laevis
GN=Pabpn1l-a PE=1 SV=1
Length = 218
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 105 RAFRAQREDSV-RRTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRF 158
R A+ + + +R+VYV ++D T + L FSSCG + + C + G P +
Sbjct: 80 RPLSAEEKKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKG---Y 136
Query: 159 AFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPT 200
A++EFA+ + AA+ + T+ ++VLP +T + ++ T
Sbjct: 137 AYIEFAERNSVDAAVTMDETVFRGRTIKVLPKRTNMPGISST 178
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 12/109 (11%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD-PHSVLRFAFVEFADEHGARAALNLG 176
++YV D+D ++ E L LF+ V + RVC D H L +A+V FA+ A A+
Sbjct: 60 SLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAME-- 117
Query: 177 GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
L Y P+R P + + +P+ R V+ N+D +
Sbjct: 118 --SLNYAPIRDRPIRIMLSNRDPS-------TRLSGKGNVFIKNLDASI 157
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 19/103 (18%)
Query: 104 GRA-FRAQREDSVRRT----------------VYVSDIDQNITEERLAGLFSSCGQVVDC 146
GRA ++ RE+ +RR +Y+ ++D ++ +E+L +FS G V C
Sbjct: 312 GRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSC 371
Query: 147 RVCGDPHSVLR-FAFVEFADEHGARAALN-LGGTMLGYYPVRV 187
+V + + R F FV +++ A A+ + G M+G P+ V
Sbjct: 372 KVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYV 414
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 26/143 (18%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR--- 157
R + R+ S R + V++ ++D +I + L FSS G ++ C+V D V R
Sbjct: 130 RIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMD--VVGRSKG 187
Query: 158 FAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT- 215
+ FV+F E A+AA++ L G +L V V F+ R + R
Sbjct: 188 YGFVQFEKEETAQAAIDKLNGMLLNDKQVFV-----------GHFVRRQDRARSESGAVP 236
Query: 216 ----VYCTNIDKKVPQAEVKQFF 234
VY N+ K++ E+K+ F
Sbjct: 237 SFTNVYVKNLPKEITDDELKKTF 259
>sp|Q60899|ELAV2_MOUSE ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1
Length = 360
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 24/129 (18%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTM 136
Query: 226 PQAEVKQFF 234
Q E++Q F
Sbjct: 137 TQKELEQLF 145
>sp|Q6NVP7|PABP2_XENTR Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1
PE=2 SV=1
Length = 296
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 163 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKG---FAYIEFSDKESVRT 219
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L L ++ ++V+P +T
Sbjct: 220 SLALDESLFRGRQIKVVPKRT 240
>sp|Q7ZXB8|PAB2B_XENLA Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-b
PE=2 SV=1
Length = 295
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF+D+ R
Sbjct: 162 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKG---FAYIEFSDKESVRT 218
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L L ++ ++V+P +T
Sbjct: 219 SLALDESLFRGRQIKVVPKRT 239
>sp|Q5R9Z6|ELAV2_PONAB ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1
Length = 359
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 24/129 (18%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTM 136
Query: 226 PQAEVKQFF 234
Q E++Q F
Sbjct: 137 TQKELEQLF 145
>sp|Q12926|ELAV2_HUMAN ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2
Length = 359
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 24/129 (18%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D L + FV + D A
Sbjct: 35 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 170 RAALN-LGGTMLGYYPVRVL---PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
A+N L G L ++V PS +I N +Y + + K +
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYARPSSASIRDAN-----------------LYVSGLPKTM 136
Query: 226 PQAEVKQFF 234
Q E++Q F
Sbjct: 137 TQKELEQLF 145
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFAD-EHGARAALN 174
++YV ++D NITE L +FS G + RVC D + L +A+V + D E G +A
Sbjct: 51 SLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQE 110
Query: 175 LGGTMLGYYPVRVLPSK 191
L + P R++ S+
Sbjct: 111 LNYAEINGRPCRIMWSE 127
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 18/139 (12%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R ++R+ ++R+ +++ ++ I + L FS+ G+V+ C+V D + R F
Sbjct: 122 RIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFG 181
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRV---LPSKTAILPVNPTFLPRSEDEREMCSRT 215
FV F +E A+ A+ + G ++ V V +P K I + +E +
Sbjct: 182 FVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKL---------EEAKANFTN 232
Query: 216 VYCTNIDKKVPQAEVKQFF 234
+Y NID + E +Q F
Sbjct: 233 IYVKNIDVETTDEEFEQLF 251
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL 173
+YV +ID T+E LFS G++V + D + F FV F D + A A+
Sbjct: 233 IYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAV 288
>sp|Q28FX0|ELAV3_XENTR ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1
Length = 343
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D + A
Sbjct: 31 DDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDAD 90
Query: 171 AALN-LGGTMLGYYPVRVL---PSKTAILPVN--PTFLPRSEDEREM 211
A+N L G L ++V PS +I N + LP++ +++EM
Sbjct: 91 KAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSSLPKTMNQKEM 137
>sp|Q28GD4|ELAV2_XENTR ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2
Length = 375
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 18/126 (14%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGA 169
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D A
Sbjct: 63 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 121
Query: 170 RAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228
A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 122 EKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQK 167
Query: 229 EVKQFF 234
E++Q F
Sbjct: 168 ELEQLF 173
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 105 RAFRAQR----EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R F +R E S +Y+ ++D ++ +E+L +FS G V +V +P + R F
Sbjct: 316 RKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFG 375
Query: 160 FVEFAD-EHGARAALNLGGTMLGYYPVRV 187
FV +++ E RA + G M+G P+ +
Sbjct: 376 FVAYSNPEEALRALSEMNGKMIGRKPLYI 404
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 67/141 (47%), Gaps = 22/141 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FA 159
R + R+ S R + +++ ++D +I + L FSS G ++ C+V D + +
Sbjct: 120 RIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYG 179
Query: 160 FVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT--- 215
FV+F E A+AA++ L G ++ V V F+ R E R+ + T
Sbjct: 180 FVQFEKEESAQAAIDKLNGMLMNDKQVFV-----------GHFIRRQERARDENTPTPRF 228
Query: 216 --VYCTNIDKKVPQAEVKQFF 234
VY N+ K++ + E+++ F
Sbjct: 229 TNVYVKNLPKEIGEDELRKTF 249
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGA-RAALNL 175
++Y D+D +TE L LF VV RVC D + L +A++ F++ + A RA L
Sbjct: 50 SLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 176 GGTMLGYYPVRVL 188
T L P+R++
Sbjct: 110 NYTPLFDRPIRIM 122
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ +R++ V++ ++D++I + L FS+ G ++ C+V D H
Sbjct: 77 IKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG 136
Query: 155 VLRFAFVEFADEHGA-RAALNLGGTML 180
+ FV F A RA + G +L
Sbjct: 137 SRGYGFVHFETHEAANRAIQTMNGMLL 163
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++Y+ D+ ++TE L FS G ++ RVC D L +A++ F A AL+
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSK 191
+ ++ P+R++ S+
Sbjct: 72 MNFEVIKGRPIRIMWSQ 88
Score = 31.6 bits (70), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 105 RAFRAQREDSVRR----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R F +++ + R +YV ++D I ++RL F G + +V + F F
Sbjct: 278 RKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHSKGFGF 337
Query: 161 VEFAD-EHGARAALNLGGTMLGYYPVRV 187
V F+ E +A + G ++ P+ V
Sbjct: 338 VCFSSPEEATKAVTEMNGRIVSTKPLYV 365
>sp|Q91584|ELAV3_XENLA ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1
Length = 348
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGAR 170
D + + V+ + QN+T+E LF S G++ C++ D + L + FV + D + A
Sbjct: 30 DDSKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDAD 89
Query: 171 AALN-LGGTMLGYYPVRVL---PSKTAILPVN--PTFLPRSEDEREM 211
A+N L G L ++V PS +I N + LP++ +++EM
Sbjct: 90 KAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSSLPKTMNQKEM 136
>sp|Q91903|ELAV2_XENLA ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2
Length = 389
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 19/127 (14%)
Query: 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS---VLRFAFVEFADEHG 168
EDS + + V+ + QN+T+E L LF S G++ C++ D + L + FV + D
Sbjct: 62 EDS-KTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKD 120
Query: 169 ARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQ 227
A A+N L G L ++V ++ P S R+ +Y + + K + Q
Sbjct: 121 AEKAINTLNGLRLQTKTIKVSYAR-----------PSSASIRDA---NLYVSGLPKTMTQ 166
Query: 228 AEVKQFF 234
E++Q F
Sbjct: 167 KELEQLF 173
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 70/150 (46%), Gaps = 17/150 (11%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVC-GDPHSVLRFA 159
R +QR+ S+R++ V++ ++D+ I + L FS+ G ++ C+V D +S F
Sbjct: 82 RIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFG 141
Query: 160 FVEFADEHGA-RAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYC 218
FV + + A +A + G M+ V V P K++ PT E+ V+
Sbjct: 142 FVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPT---------EVKFTNVFF 192
Query: 219 TNIDKKVPQAEVKQFFEAACGGEVRTLPCM 248
N+ + V ++K+ + GE+ + M
Sbjct: 193 KNLSEDVGPDQLKELLQQY--GEITNITIM 220
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 13/103 (12%)
Query: 98 GRKRLSGRAFRA-QREDSVRRT---------VYVSDIDQNITEERLAGLFSSCGQVVDCR 147
G+ +GRA + +RE ++ T +Y+ +ID +I ++L +FS G +
Sbjct: 255 GKPIYAGRAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAI 314
Query: 148 VCGDPHSVLR--FAFVEF-ADEHGARAALNLGGTMLGYYPVRV 187
V D + F FV + A + RA + G M+G P+ V
Sbjct: 315 VMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYV 357
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 13/124 (10%)
Query: 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172
+ ++YV D+ ++E+ L +F+ G V + RVC D ++ L +A+V + + A A
Sbjct: 8 ISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERA 67
Query: 173 LNLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQ 232
L+ L P+R + +P+ R+ V+ N+DK + +
Sbjct: 68 LD----TLNNTPIRGKACRIMWSQRDPSL-------RKSGVGNVFIKNLDKGIDHKALYD 116
Query: 233 FFEA 236
F A
Sbjct: 117 TFSA 120
>sp|P41891|GAR2_SCHPO Protein gar2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=gar2 PE=1 SV=2
Length = 500
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNL 175
TV+V ++ N TE+ L+ F CG + R+ DP S + F +V F+D A+ + +
Sbjct: 367 TVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEM 426
Query: 176 GGTMLGYYPVRV 187
G + P R+
Sbjct: 427 NGHFIAGRPCRL 438
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 19/128 (14%)
Query: 102 LSGRAFR---AQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS 154
+ GR R +QR+ S+R++ +++ ++D++I + L FS+ G ++ C+V D +
Sbjct: 77 IKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG 136
Query: 155 VLRFAFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCS 213
+ FV F + A A++ + G +L V V F R E E E+ +
Sbjct: 137 SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVG-----------RFKSRKEREAELGA 185
Query: 214 RTVYCTNI 221
R TN+
Sbjct: 186 RAKEFTNV 193
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ Q++TE L FS G ++ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ PVR++ S+ R R+ ++ N+DK +
Sbjct: 72 MNFDVIKGRPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI 110
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 64/169 (37%), Gaps = 26/169 (15%)
Query: 37 QKLVDMFTKLNPL------------AKEFFPSYYHQHTDHHFSVINNNFADDNKQSA-ID 83
++L +MF K P +K F + +H D +V N D N +S +
Sbjct: 205 ERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVG 264
Query: 84 NFNNNRRRRNNFNQGRKRLSGRAFRAQREDSVRR----TVYVSDIDQNITEERLAGLFSS 139
R+ R F ++D + R +YV ++D I +ERL F
Sbjct: 265 RAQKKVERQTELK--------RKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLP 316
Query: 140 CGQVVDCRVCGDPHSVLRFAFVEFAD-EHGARAALNLGGTMLGYYPVRV 187
G + +V + F FV F+ E +A + G ++ P+ V
Sbjct: 317 FGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
>sp|P25299|RNA15_YEAST mRNA 3'-end-processing protein RNA15 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RNA15 PE=1 SV=1
Length = 296
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD-EHGARAAL 173
R VY+ I + TEE++ L S+ G V++ ++ DP + +AF+EF D E A A
Sbjct: 18 RVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVR 77
Query: 174 NLGGTMLG 181
NL G LG
Sbjct: 78 NLNGYQLG 85
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 21/140 (15%)
Query: 105 RAFRAQREDSVRRT----VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAF 160
R +QR+ S+R++ +++ ++D++I + L FS+ G ++ C+V D + + F
Sbjct: 83 RIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGF 142
Query: 161 VEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRT---- 215
V F + A A++ + G +L V V F R E E E+ +R
Sbjct: 143 VHFETQEAAERAIDKMNGMLLNDRKVFVG-----------RFKSRKEREAELGARAKEFT 191
Query: 216 -VYCTNIDKKVPQAEVKQFF 234
VY N + + +K++F
Sbjct: 192 NVYIKNFGEDMDDERLKEWF 211
Score = 39.3 bits (90), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Query: 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALN- 174
++YV D+ ++TE L FS G ++ RVC D L +A+V F A AL+
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 175 LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV 225
+ ++ PVR++ S+ R R+ ++ N+DK +
Sbjct: 72 MNFDVIKGKPVRIMWSQ------------RDPSLRKSGVGNIFIKNLDKSI 110
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 60/158 (37%), Gaps = 21/158 (13%)
Query: 51 KEFFPSY-----YHQHTDHHFSVINNNFAD----DNKQSAIDNFNNNRRRRNNFNQGRKR 101
KE+F Y TD H F ++ Q A+D+ N GR +
Sbjct: 208 KEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQ 267
Query: 102 LS-------GRAFRAQREDSVRR----TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCG 150
R F ++D + R +YV ++D I +ERL F+ G + +V
Sbjct: 268 KKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMM 327
Query: 151 DPHSVLRFAFVEFAD-EHGARAALNLGGTMLGYYPVRV 187
+ F FV F+ E +A + G ++ P+ V
Sbjct: 328 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALN 174
VY+ + +++ +ERL F G + +V D H R F FV F A+ A++
Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVD 249
>sp|Q9DDY9|PAB2A_XENLA Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-a
PE=2 SV=1
Length = 296
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 117 RTVYVSDIDQNITEERLAGLFSSCGQV----VDC-RVCGDPHSVLRFAFVEFADEHGARA 171
R++YV ++D T E L F CG V + C + G P FA++EF D+ R
Sbjct: 163 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKG---FAYIEFCDKESVRT 219
Query: 172 ALNLGGTMLGYYPVRVLPSKT 192
+L L ++ ++V+P +T
Sbjct: 220 SLALDESLFRGRQIKVVPKRT 240
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,094,636
Number of Sequences: 539616
Number of extensions: 4274118
Number of successful extensions: 74549
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 530
Number of HSP's that attempted gapping in prelim test: 36990
Number of HSP's gapped (non-prelim): 22046
length of query: 264
length of database: 191,569,459
effective HSP length: 115
effective length of query: 149
effective length of database: 129,513,619
effective search space: 19297529231
effective search space used: 19297529231
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)