Query 024698
Match_columns 264
No_of_seqs 272 out of 2412
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 06:40:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024698.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024698hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 5.1E-35 1.1E-39 264.3 22.0 215 23-251 4-305 (352)
2 TIGR01628 PABP-1234 polyadenyl 100.0 3.3E-33 7.1E-38 267.3 21.1 204 24-252 2-215 (562)
3 KOG0145 RNA-binding protein EL 100.0 1E-32 2.2E-37 229.1 14.8 216 24-252 43-315 (360)
4 KOG0117 Heterogeneous nuclear 100.0 1.1E-31 2.3E-36 237.4 16.5 210 25-258 86-302 (506)
5 TIGR01628 PABP-1234 polyadenyl 100.0 9.8E-31 2.1E-35 250.2 22.6 215 23-251 89-321 (562)
6 TIGR01648 hnRNP-R-Q heterogene 100.0 5.1E-31 1.1E-35 248.1 20.2 212 23-257 59-277 (578)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2.4E-28 5.1E-33 229.5 22.5 214 24-258 4-319 (481)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 4.2E-28 9.1E-33 227.8 22.8 207 24-250 98-431 (481)
9 TIGR01659 sex-lethal sex-letha 100.0 1.8E-28 4E-33 219.9 17.3 160 22-192 107-274 (346)
10 TIGR01622 SF-CC1 splicing fact 100.0 3E-27 6.5E-32 220.8 24.2 157 23-191 90-264 (457)
11 TIGR01642 U2AF_lg U2 snRNP aux 99.9 2.7E-26 5.7E-31 217.1 22.7 208 23-250 176-454 (509)
12 TIGR01645 half-pint poly-U bin 99.9 3.5E-27 7.5E-32 222.7 16.4 158 24-192 109-283 (612)
13 KOG0127 Nucleolar protein fibr 99.9 1.4E-26 3E-31 209.2 18.1 220 23-255 6-332 (678)
14 KOG0148 Apoptosis-promoting RN 99.9 4.6E-26 9.9E-31 190.5 14.9 154 26-194 66-239 (321)
15 KOG0148 Apoptosis-promoting RN 99.9 6.3E-26 1.4E-30 189.6 15.4 196 23-260 7-207 (321)
16 KOG0123 Polyadenylate-binding 99.9 6.4E-26 1.4E-30 204.7 16.5 197 32-254 8-206 (369)
17 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 1.3E-25 2.8E-30 203.0 16.6 158 23-191 90-347 (352)
18 TIGR01648 hnRNP-R-Q heterogene 99.9 4.1E-24 8.9E-29 201.5 16.7 202 23-243 139-369 (578)
19 TIGR01659 sex-lethal sex-letha 99.9 5.6E-24 1.2E-28 191.0 16.3 124 112-251 103-229 (346)
20 KOG0144 RNA-binding protein CU 99.9 7.5E-25 1.6E-29 193.3 10.2 159 24-193 36-206 (510)
21 KOG0123 Polyadenylate-binding 99.9 1.7E-23 3.7E-28 188.9 13.1 216 25-256 79-311 (369)
22 TIGR01645 half-pint poly-U bin 99.9 2.7E-22 5.9E-27 189.6 16.7 132 115-251 106-240 (612)
23 KOG0131 Splicing factor 3b, su 99.9 1.1E-22 2.3E-27 161.4 8.8 159 21-191 8-175 (203)
24 TIGR01622 SF-CC1 splicing fact 99.9 1.6E-20 3.6E-25 175.4 18.2 133 115-251 88-222 (457)
25 KOG0110 RNA-binding protein (R 99.9 1.2E-20 2.7E-25 175.6 16.4 203 24-250 387-648 (725)
26 KOG0117 Heterogeneous nuclear 99.9 7.6E-21 1.6E-25 168.8 13.2 155 23-193 165-331 (506)
27 KOG0127 Nucleolar protein fibr 99.8 2.4E-20 5.2E-25 169.1 15.0 154 25-190 120-375 (678)
28 KOG0109 RNA-binding protein LA 99.8 1.3E-20 2.9E-25 159.3 8.9 144 24-192 4-149 (346)
29 TIGR01642 U2AF_lg U2 snRNP aux 99.8 1E-19 2.2E-24 172.2 15.8 157 23-190 296-499 (509)
30 KOG0145 RNA-binding protein EL 99.8 8E-20 1.7E-24 152.5 13.0 157 23-190 128-355 (360)
31 KOG0124 Polypyrimidine tract-b 99.8 5.3E-20 1.1E-24 159.9 11.3 155 26-191 117-288 (544)
32 KOG0109 RNA-binding protein LA 99.8 1.2E-19 2.6E-24 153.5 8.6 117 117-257 3-120 (346)
33 KOG4205 RNA-binding protein mu 99.8 7.5E-19 1.6E-23 154.2 9.6 156 24-191 8-174 (311)
34 KOG0144 RNA-binding protein CU 99.7 2.8E-18 6E-23 152.0 8.6 125 113-252 31-161 (510)
35 KOG0131 Splicing factor 3b, su 99.7 6.6E-18 1.4E-22 134.3 8.1 121 115-250 8-132 (203)
36 KOG0110 RNA-binding protein (R 99.7 6.6E-18 1.4E-22 157.6 9.0 160 25-192 518-692 (725)
37 KOG0105 Alternative splicing f 99.7 7.6E-17 1.7E-21 128.5 12.9 142 115-259 5-159 (241)
38 KOG0124 Polypyrimidine tract-b 99.7 2.7E-17 5.9E-22 143.1 8.5 124 117-251 114-246 (544)
39 PLN03134 glycine-rich RNA-bind 99.7 1.7E-16 3.7E-21 125.8 12.0 78 115-192 33-113 (144)
40 KOG0147 Transcriptional coacti 99.7 4.6E-17 1E-21 148.3 8.4 148 30-189 187-354 (549)
41 PF00076 RRM_1: RNA recognitio 99.6 1.5E-15 3.2E-20 104.8 9.3 68 119-186 1-70 (70)
42 PLN03120 nucleic acid binding 99.6 3.7E-15 7.9E-20 126.8 11.0 76 116-192 4-79 (260)
43 KOG4205 RNA-binding protein mu 99.6 4.7E-15 1E-19 130.3 9.4 129 115-253 5-135 (311)
44 KOG0146 RNA-binding protein ET 99.6 9.5E-15 2.1E-19 122.7 10.5 76 116-191 285-363 (371)
45 KOG0125 Ataxin 2-binding prote 99.6 1.5E-14 3.2E-19 124.6 9.3 77 115-191 95-172 (376)
46 PLN03213 repressor of silencin 99.6 5E-15 1.1E-19 133.5 6.1 129 115-258 9-144 (759)
47 COG0724 RNA-binding proteins ( 99.5 1.4E-13 3E-18 118.1 14.0 133 116-250 115-260 (306)
48 PF14259 RRM_6: RNA recognitio 99.5 8E-14 1.7E-18 96.5 9.4 68 119-186 1-70 (70)
49 KOG0121 Nuclear cap-binding pr 99.5 2.8E-14 6E-19 107.5 6.8 76 115-190 35-113 (153)
50 PLN03121 nucleic acid binding 99.5 1.1E-13 2.4E-18 116.1 11.2 77 115-192 4-80 (243)
51 KOG4206 Spliceosomal protein s 99.5 3.9E-13 8.5E-18 110.8 13.2 138 116-256 9-190 (221)
52 KOG0105 Alternative splicing f 99.5 3.1E-13 6.8E-18 108.0 11.2 142 24-181 8-176 (241)
53 smart00362 RRM_2 RNA recogniti 99.5 4.2E-13 9.1E-18 91.8 9.7 71 118-188 1-72 (72)
54 KOG1190 Polypyrimidine tract-b 99.5 3.5E-12 7.6E-17 112.9 17.0 201 26-246 154-446 (492)
55 KOG0149 Predicted RNA-binding 99.5 2.1E-13 4.6E-18 112.9 8.5 78 115-192 11-90 (247)
56 KOG0122 Translation initiation 99.5 3.2E-13 7E-18 112.2 9.3 78 115-192 188-268 (270)
57 KOG0107 Alternative splicing f 99.4 2.7E-13 5.8E-18 107.5 7.4 75 115-192 9-84 (195)
58 KOG0114 Predicted RNA-binding 99.4 7.7E-13 1.7E-17 96.2 8.9 77 113-190 15-92 (124)
59 KOG4206 Spliceosomal protein s 99.4 6.3E-12 1.4E-16 103.7 13.6 150 24-190 11-219 (221)
60 KOG0126 Predicted RNA-binding 99.4 5.8E-14 1.3E-18 111.8 0.7 76 115-190 34-112 (219)
61 KOG4212 RNA-binding protein hn 99.4 3.6E-11 7.7E-16 107.4 18.0 153 24-188 46-289 (608)
62 KOG4211 Splicing factor hnRNP- 99.4 4.5E-12 9.7E-17 114.7 11.4 154 26-190 14-179 (510)
63 KOG0147 Transcriptional coacti 99.4 1.7E-13 3.7E-18 125.2 2.2 132 115-251 178-314 (549)
64 cd00590 RRM RRM (RNA recogniti 99.4 7.7E-12 1.7E-16 85.9 9.8 72 118-189 1-74 (74)
65 KOG4212 RNA-binding protein hn 99.3 7.6E-12 1.6E-16 111.6 11.3 136 115-252 43-252 (608)
66 KOG4207 Predicted splicing fac 99.3 2.2E-12 4.7E-17 104.9 6.9 79 115-193 12-93 (256)
67 smart00360 RRM RNA recognition 99.3 6.9E-12 1.5E-16 85.3 8.5 68 121-188 1-71 (71)
68 KOG0113 U1 small nuclear ribon 99.3 5.8E-12 1.2E-16 107.5 9.3 77 114-190 99-178 (335)
69 KOG0146 RNA-binding protein ET 99.3 1.8E-11 4E-16 103.1 11.3 78 112-189 15-97 (371)
70 KOG0111 Cyclophilin-type pepti 99.3 1.8E-12 3.9E-17 106.3 4.6 81 114-194 8-91 (298)
71 KOG0106 Alternative splicing f 99.3 7.1E-12 1.5E-16 104.2 6.9 132 118-257 3-141 (216)
72 KOG0130 RNA-binding protein RB 99.3 6.6E-12 1.4E-16 95.6 5.5 73 118-190 74-149 (170)
73 PF13893 RRM_5: RNA recognitio 99.3 2.9E-11 6.3E-16 80.1 7.9 55 133-190 1-56 (56)
74 KOG0106 Alternative splicing f 99.3 7.8E-12 1.7E-16 104.0 6.1 139 26-189 5-167 (216)
75 KOG1190 Polypyrimidine tract-b 99.3 2E-10 4.3E-15 101.9 14.9 212 26-260 32-342 (492)
76 KOG4211 Splicing factor hnRNP- 99.2 1.1E-10 2.4E-15 105.8 13.2 128 116-251 10-140 (510)
77 KOG1457 RNA binding protein (c 99.2 1.4E-10 3E-15 95.5 12.6 79 114-192 32-117 (284)
78 KOG0108 mRNA cleavage and poly 99.2 2.9E-11 6.3E-16 110.9 7.9 75 117-191 19-96 (435)
79 PLN03134 glycine-rich RNA-bind 99.2 2.2E-11 4.8E-16 96.5 5.4 64 23-97 35-98 (144)
80 smart00361 RRM_1 RNA recogniti 99.2 1.6E-10 3.4E-15 80.2 8.2 59 130-188 2-70 (70)
81 PF00076 RRM_1: RNA recognitio 99.1 1.4E-10 3E-15 79.7 4.3 60 26-97 2-61 (70)
82 KOG1456 Heterogeneous nuclear 99.1 2.3E-08 4.9E-13 88.1 18.2 202 28-249 128-441 (494)
83 COG0724 RNA-binding proteins ( 99.1 1.2E-09 2.5E-14 93.6 10.1 121 22-153 115-262 (306)
84 KOG0153 Predicted RNA-binding 99.0 1E-09 2.3E-14 95.6 8.3 77 112-192 224-302 (377)
85 KOG0122 Translation initiation 99.0 4.9E-10 1.1E-14 93.4 5.7 63 24-97 191-253 (270)
86 KOG1548 Transcription elongati 99.0 1.2E-08 2.5E-13 89.1 14.3 144 112-257 130-319 (382)
87 KOG0132 RNA polymerase II C-te 99.0 9.8E-10 2.1E-14 104.3 7.5 73 115-191 420-493 (894)
88 KOG0149 Predicted RNA-binding 99.0 4.2E-10 9.1E-15 93.4 4.3 63 24-97 14-76 (247)
89 KOG1457 RNA binding protein (c 98.9 1.1E-08 2.3E-13 84.5 10.4 145 23-180 35-273 (284)
90 KOG4454 RNA binding protein (R 98.9 4.2E-10 9.1E-15 92.4 0.5 109 115-252 8-121 (267)
91 KOG0415 Predicted peptidyl pro 98.9 3.4E-09 7.4E-14 92.7 5.7 75 116-190 239-316 (479)
92 smart00360 RRM RNA recognition 98.8 5.4E-09 1.2E-13 70.7 5.3 59 28-97 2-60 (71)
93 PF14259 RRM_6: RNA recognitio 98.8 3.7E-09 8.1E-14 72.9 4.4 59 26-96 2-60 (70)
94 KOG4207 Predicted splicing fac 98.8 2.8E-09 6.1E-14 86.9 4.3 63 24-97 15-77 (256)
95 KOG0129 Predicted RNA-binding 98.8 4.4E-08 9.5E-13 89.7 12.4 131 113-250 256-406 (520)
96 KOG0120 Splicing factor U2AF, 98.8 1.6E-08 3.6E-13 93.6 9.7 209 24-251 177-445 (500)
97 KOG0129 Predicted RNA-binding 98.8 5.1E-08 1.1E-12 89.2 12.3 162 24-189 261-450 (520)
98 KOG0125 Ataxin 2-binding prote 98.8 6.9E-09 1.5E-13 90.0 5.4 61 24-97 98-158 (376)
99 KOG4661 Hsp27-ERE-TATA-binding 98.8 2.1E-08 4.6E-13 92.5 8.1 80 115-194 404-486 (940)
100 KOG4209 Splicing factor RNPS1, 98.8 1.7E-08 3.7E-13 85.8 6.9 83 112-194 97-181 (231)
101 KOG4454 RNA binding protein (R 98.8 8.6E-09 1.9E-13 84.8 4.6 143 23-188 10-158 (267)
102 KOG0128 RNA-binding protein SA 98.7 5.5E-09 1.2E-13 100.3 3.8 142 25-191 670-813 (881)
103 KOG0226 RNA-binding proteins [ 98.7 1.3E-08 2.9E-13 85.4 5.2 139 40-190 117-267 (290)
104 KOG0113 U1 small nuclear ribon 98.7 1.7E-08 3.6E-13 86.6 5.4 63 24-97 103-165 (335)
105 KOG4210 Nuclear localization s 98.7 1.6E-08 3.4E-13 88.8 5.4 157 24-191 90-262 (285)
106 KOG0126 Predicted RNA-binding 98.7 8.8E-10 1.9E-14 88.1 -2.5 62 25-97 38-99 (219)
107 smart00361 RRM_1 RNA recogniti 98.7 2E-08 4.3E-13 69.6 4.4 51 36-97 2-59 (70)
108 KOG0120 Splicing factor U2AF, 98.7 2E-07 4.3E-12 86.6 11.3 153 24-190 291-489 (500)
109 KOG4208 Nucleolar RNA-binding 98.7 5.7E-08 1.2E-12 79.4 6.8 77 115-191 48-128 (214)
110 PLN03120 nucleic acid binding 98.7 2.1E-08 4.6E-13 85.7 4.5 60 23-97 5-64 (260)
111 KOG1365 RNA-binding protein Fu 98.7 1.4E-07 2.9E-12 83.6 9.3 156 25-191 164-360 (508)
112 PLN03121 nucleic acid binding 98.7 2.8E-08 6.1E-13 83.8 4.8 61 22-97 5-65 (243)
113 KOG1548 Transcription elongati 98.7 7E-07 1.5E-11 78.2 13.5 155 22-190 134-349 (382)
114 smart00362 RRM_2 RNA recogniti 98.6 6.3E-08 1.4E-12 65.7 5.2 59 26-97 3-61 (72)
115 KOG1365 RNA-binding protein Fu 98.6 2.9E-07 6.3E-12 81.5 10.4 204 26-237 64-304 (508)
116 KOG1456 Heterogeneous nuclear 98.6 3.6E-06 7.9E-11 74.5 17.0 210 26-253 35-326 (494)
117 KOG0114 Predicted RNA-binding 98.6 9.1E-08 2E-12 69.9 5.2 60 24-97 20-79 (124)
118 KOG0121 Nuclear cap-binding pr 98.6 6.4E-08 1.4E-12 73.3 4.5 64 23-97 37-100 (153)
119 KOG0151 Predicted splicing reg 98.6 2.1E-07 4.6E-12 88.0 8.6 90 115-204 173-268 (877)
120 KOG0116 RasGAP SH3 binding pro 98.6 1.2E-07 2.7E-12 86.7 6.9 77 117-193 289-367 (419)
121 KOG0112 Large RNA-binding prot 98.5 1.8E-07 3.8E-12 90.5 6.9 151 23-193 373-531 (975)
122 KOG0533 RRM motif-containing p 98.5 3.9E-07 8.4E-12 77.6 8.2 77 115-191 82-160 (243)
123 KOG0107 Alternative splicing f 98.5 1.2E-07 2.7E-12 75.5 4.5 58 24-97 12-69 (195)
124 KOG0128 RNA-binding protein SA 98.5 2.1E-08 4.6E-13 96.4 0.1 172 38-252 588-773 (881)
125 PLN03213 repressor of silencin 98.5 1.8E-07 3.8E-12 85.3 4.9 62 23-97 11-72 (759)
126 KOG4660 Protein Mei2, essentia 98.5 1.2E-07 2.5E-12 87.6 3.8 130 113-249 72-210 (549)
127 KOG0108 mRNA cleavage and poly 98.4 2.7E-07 5.9E-12 84.9 5.2 64 23-97 19-82 (435)
128 PF13893 RRM_5: RNA recognitio 98.4 3.2E-07 7E-12 60.4 4.1 43 39-97 1-43 (56)
129 cd00590 RRM RRM (RNA recogniti 98.4 4.7E-07 1E-11 61.6 5.0 60 26-97 3-62 (74)
130 KOG0111 Cyclophilin-type pepti 98.4 3.2E-07 6.9E-12 75.7 4.4 65 22-97 10-74 (298)
131 KOG0130 RNA-binding protein RB 98.3 6.7E-07 1.4E-11 68.5 3.6 61 26-97 76-136 (170)
132 PF04059 RRM_2: RNA recognitio 98.2 1.1E-05 2.3E-10 59.3 8.9 76 116-191 1-85 (97)
133 PF11608 Limkain-b1: Limkain b 98.2 7.1E-06 1.5E-10 57.9 6.2 67 117-191 3-75 (90)
134 KOG4208 Nucleolar RNA-binding 98.0 5.1E-06 1.1E-10 68.1 4.3 61 26-97 53-114 (214)
135 KOG0112 Large RNA-binding prot 98.0 3.8E-06 8.1E-11 81.6 3.8 126 115-260 371-498 (975)
136 KOG4676 Splicing factor, argin 98.0 7.4E-06 1.6E-10 72.9 4.4 130 117-248 8-184 (479)
137 KOG4210 Nuclear localization s 97.9 1.1E-05 2.4E-10 70.9 4.6 131 115-253 87-223 (285)
138 KOG2193 IGF-II mRNA-binding pr 97.7 1.9E-05 4.2E-10 71.0 2.7 108 118-247 3-112 (584)
139 PF08777 RRM_3: RNA binding mo 97.6 0.00023 5E-09 53.2 6.8 67 118-188 3-75 (105)
140 KOG0116 RasGAP SH3 binding pro 97.6 5.9E-05 1.3E-09 69.3 3.9 55 24-85 290-344 (419)
141 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00026 5.7E-09 46.1 5.4 52 117-173 2-53 (53)
142 COG5175 MOT2 Transcriptional r 97.4 0.00033 7.1E-09 61.6 6.2 72 119-190 117-200 (480)
143 KOG0415 Predicted peptidyl pro 97.4 9.3E-05 2E-09 65.3 2.7 63 24-97 241-303 (479)
144 KOG1995 Conserved Zn-finger pr 97.4 0.00013 2.8E-09 64.6 3.6 76 115-190 65-151 (351)
145 KOG4661 Hsp27-ERE-TATA-binding 97.4 0.00023 4.9E-09 66.5 5.3 63 24-97 407-469 (940)
146 KOG4660 Protein Mei2, essentia 97.4 0.00017 3.7E-09 67.1 4.2 140 23-184 76-241 (549)
147 KOG0226 RNA-binding proteins [ 97.4 0.00024 5.2E-09 60.2 4.5 61 26-97 194-254 (290)
148 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.0022 4.7E-08 47.4 8.3 74 116-190 6-89 (100)
149 KOG0153 Predicted RNA-binding 97.3 0.00022 4.9E-09 62.8 3.5 53 20-85 226-278 (377)
150 PF04059 RRM_2: RNA recognitio 97.3 0.00049 1.1E-08 50.5 4.6 61 26-97 5-67 (97)
151 KOG4307 RNA binding protein RB 97.1 0.0014 3E-08 62.7 7.5 74 116-189 867-943 (944)
152 KOG1855 Predicted RNA-binding 97.1 0.00042 9.1E-09 62.7 3.8 66 111-176 226-306 (484)
153 PF08952 DUF1866: Domain of un 97.1 0.0023 5E-08 50.2 7.1 54 132-191 52-105 (146)
154 KOG4676 Splicing factor, argin 97.1 0.00023 5.1E-09 63.6 1.7 150 25-181 10-214 (479)
155 KOG0533 RRM motif-containing p 97.1 0.00069 1.5E-08 57.9 4.4 62 24-97 85-146 (243)
156 KOG4209 Splicing factor RNPS1, 96.9 0.00061 1.3E-08 58.1 2.9 64 23-98 102-165 (231)
157 KOG0132 RNA polymerase II C-te 96.9 0.0011 2.3E-08 64.1 4.1 57 24-97 423-479 (894)
158 KOG2314 Translation initiation 96.8 0.0038 8.2E-08 58.5 7.4 75 115-189 57-140 (698)
159 KOG2193 IGF-II mRNA-binding pr 96.7 0.00017 3.7E-09 65.0 -2.5 144 24-190 3-154 (584)
160 KOG4307 RNA binding protein RB 96.7 0.0039 8.4E-08 59.8 6.2 74 117-190 435-511 (944)
161 KOG3152 TBP-binding protein, a 96.6 0.0011 2.4E-08 56.3 1.9 68 117-184 75-157 (278)
162 KOG1996 mRNA splicing factor [ 96.5 0.0097 2.1E-07 51.6 6.7 60 130-189 300-363 (378)
163 KOG4849 mRNA cleavage factor I 96.4 0.0033 7.2E-08 55.6 3.4 74 116-189 80-158 (498)
164 KOG2202 U2 snRNP splicing fact 96.2 0.0021 4.6E-08 54.6 1.4 58 133-190 85-145 (260)
165 KOG2314 Translation initiation 96.1 0.006 1.3E-07 57.2 4.0 51 35-97 77-127 (698)
166 PF08675 RNA_bind: RNA binding 96.0 0.037 7.9E-07 39.2 6.4 52 118-176 11-63 (87)
167 PF08777 RRM_3: RNA binding mo 95.9 0.011 2.5E-07 44.1 3.8 52 29-94 8-59 (105)
168 PF14605 Nup35_RRM_2: Nup53/35 95.8 0.013 2.7E-07 38.1 3.5 39 36-91 14-52 (53)
169 KOG0151 Predicted splicing reg 95.5 0.02 4.3E-07 55.2 4.9 65 22-97 174-241 (877)
170 PF07292 NID: Nmi/IFP 35 domai 95.4 0.017 3.7E-07 41.6 3.1 74 159-237 1-76 (88)
171 PF10309 DUF2414: Protein of u 95.3 0.097 2.1E-06 35.1 6.4 51 117-173 6-59 (62)
172 PF07576 BRAP2: BRCA1-associat 95.1 0.24 5.1E-06 37.3 8.8 64 119-182 16-81 (110)
173 KOG2135 Proteins containing th 94.9 0.014 3.1E-07 53.7 1.9 71 118-192 374-445 (526)
174 PF03467 Smg4_UPF3: Smg-4/UPF3 94.5 0.073 1.6E-06 43.6 5.1 68 115-182 6-82 (176)
175 KOG0804 Cytoplasmic Zn-finger 94.5 0.28 6E-06 45.2 9.1 68 115-182 73-142 (493)
176 KOG0115 RNA-binding protein p5 94.2 0.082 1.8E-06 45.2 4.7 65 168-255 6-71 (275)
177 KOG0115 RNA-binding protein p5 94.1 0.052 1.1E-06 46.4 3.4 73 117-189 32-110 (275)
178 KOG4285 Mitotic phosphoprotein 92.3 0.28 6E-06 43.0 5.1 66 119-189 200-266 (350)
179 PF15023 DUF4523: Protein of u 92.1 0.42 9.1E-06 37.4 5.4 70 115-190 85-159 (166)
180 KOG2068 MOT2 transcription fac 92.1 0.071 1.5E-06 47.2 1.3 75 117-191 78-161 (327)
181 KOG1855 Predicted RNA-binding 92.0 0.12 2.5E-06 47.3 2.6 71 23-97 232-308 (484)
182 PF05172 Nup35_RRM: Nup53/35/4 91.1 0.34 7.4E-06 35.8 3.9 56 35-94 18-73 (100)
183 PF11608 Limkain-b1: Limkain b 91.1 0.42 9.2E-06 34.0 4.1 41 214-256 3-46 (90)
184 KOG2416 Acinus (induces apopto 90.6 0.19 4.1E-06 47.8 2.6 70 116-189 444-518 (718)
185 KOG3152 TBP-binding protein, a 90.3 0.42 9.1E-06 41.0 4.1 37 212-250 73-109 (278)
186 KOG2202 U2 snRNP splicing fact 89.3 0.15 3.2E-06 43.6 0.8 55 31-97 77-132 (260)
187 PF04847 Calcipressin: Calcipr 89.0 1.5 3.3E-05 36.1 6.5 58 129-190 8-68 (184)
188 PF14111 DUF4283: Domain of un 89.0 0.45 9.8E-06 37.3 3.3 107 128-250 29-140 (153)
189 KOG2591 c-Mpl binding protein, 87.9 1.2 2.7E-05 42.2 5.8 68 117-189 176-248 (684)
190 PF03880 DbpA: DbpA RNA bindin 86.5 3.7 7.9E-05 28.3 6.3 57 126-189 11-73 (74)
191 PF08675 RNA_bind: RNA binding 86.1 1.7 3.8E-05 30.9 4.4 48 31-97 17-64 (87)
192 COG5175 MOT2 Transcriptional r 85.4 0.97 2.1E-05 40.3 3.5 49 39-97 137-187 (480)
193 KOG4574 RNA-binding protein (c 84.0 0.69 1.5E-05 45.9 2.2 70 119-192 301-373 (1007)
194 KOG2253 U1 snRNP complex, subu 81.9 0.84 1.8E-05 44.0 1.9 68 115-189 39-107 (668)
195 PF11767 SET_assoc: Histone ly 79.2 14 0.0003 25.0 6.6 55 126-187 10-65 (66)
196 KOG4285 Mitotic phosphoprotein 77.1 2.7 5.8E-05 37.0 3.3 43 35-94 209-251 (350)
197 KOG1995 Conserved Zn-finger pr 75.4 5.1 0.00011 36.0 4.7 67 20-97 64-138 (351)
198 KOG1996 mRNA splicing factor [ 73.8 4.8 0.0001 35.3 4.0 52 36-97 300-351 (378)
199 PF10309 DUF2414: Protein of u 64.7 13 0.00028 24.9 3.7 43 33-94 15-61 (62)
200 PF15023 DUF4523: Protein of u 64.1 15 0.00033 28.9 4.6 54 27-98 95-148 (166)
201 PF03468 XS: XS domain; Inter 63.9 6.3 0.00014 29.9 2.4 48 128-176 29-77 (116)
202 PF07292 NID: Nmi/IFP 35 domai 62.5 7.1 0.00015 28.1 2.4 25 113-137 49-73 (88)
203 KOG4849 mRNA cleavage factor I 58.4 7.4 0.00016 35.0 2.2 52 24-82 82-135 (498)
204 PF10567 Nab6_mRNP_bdg: RNA-re 57.9 17 0.00038 31.9 4.3 75 115-189 14-104 (309)
205 KOG4410 5-formyltetrahydrofola 57.0 20 0.00043 31.5 4.5 46 118-167 332-378 (396)
206 PF08952 DUF1866: Domain of un 54.5 22 0.00048 28.0 4.1 41 35-94 49-89 (146)
207 PF07625 DUF1586: Protein of u 54.3 5.3 0.00012 20.5 0.4 13 1-13 5-17 (22)
208 PF15513 DUF4651: Domain of un 53.5 26 0.00056 23.4 3.6 20 36-55 8-27 (62)
209 PF10567 Nab6_mRNP_bdg: RNA-re 46.4 13 0.00029 32.7 1.9 38 212-251 14-51 (309)
210 PF11411 DNA_ligase_IV: DNA li 46.2 15 0.00033 21.7 1.5 17 32-48 19-35 (36)
211 KOG2416 Acinus (induces apopto 45.1 10 0.00022 36.6 1.0 56 25-97 447-503 (718)
212 KOG4483 Uncharacterized conser 42.9 67 0.0014 29.7 5.7 56 115-175 390-446 (528)
213 PF04847 Calcipressin: Calcipr 42.4 61 0.0013 26.6 5.1 44 36-96 9-52 (184)
214 PF03467 Smg4_UPF3: Smg-4/UPF3 41.4 29 0.00062 28.3 3.0 65 24-97 9-77 (176)
215 KOG2068 MOT2 transcription fac 41.3 23 0.00049 31.8 2.5 50 40-97 98-147 (327)
216 KOG0156 Cytochrome P450 CYP2 s 40.3 50 0.0011 31.5 4.9 59 119-185 35-97 (489)
217 KOG4008 rRNA processing protei 35.6 28 0.00062 29.7 2.1 33 115-147 39-71 (261)
218 KOG2135 Proteins containing th 35.6 18 0.0004 33.9 1.1 50 23-85 373-423 (526)
219 PF09707 Cas_Cas2CT1978: CRISP 33.7 90 0.002 22.3 4.2 47 117-164 26-72 (86)
220 PF02714 DUF221: Domain of unk 32.9 81 0.0018 27.9 4.9 55 159-235 1-56 (325)
221 PF14111 DUF4283: Domain of un 32.0 1.2E+02 0.0027 23.2 5.2 43 119-161 107-150 (153)
222 PF00276 Ribosomal_L23: Riboso 29.7 67 0.0014 23.0 3.0 35 215-249 21-55 (91)
223 PRK14548 50S ribosomal protein 29.4 1.9E+02 0.0042 20.5 5.3 54 119-173 23-78 (84)
224 PF13046 DUF3906: Protein of u 28.4 67 0.0015 21.6 2.6 34 128-161 30-63 (64)
225 KOG2318 Uncharacterized conser 27.8 90 0.0019 30.3 4.2 39 212-250 173-214 (650)
226 PRK05738 rplW 50S ribosomal pr 27.3 1.1E+02 0.0023 22.1 3.8 36 214-249 20-55 (92)
227 TIGR01160 SUI1_MOF2 translatio 27.3 93 0.002 23.3 3.5 35 214-251 40-86 (110)
228 KOG4019 Calcineurin-mediated s 26.6 79 0.0017 26.0 3.2 74 116-193 10-90 (193)
229 KOG2318 Uncharacterized conser 26.0 3.5E+02 0.0075 26.5 7.7 73 115-187 173-300 (650)
230 COG5193 LHP1 La protein, small 25.8 49 0.0011 30.5 2.1 52 35-97 195-248 (438)
231 KOG4574 RNA-binding protein (c 24.5 42 0.00091 33.9 1.5 54 27-97 303-356 (1007)
232 KOG2591 c-Mpl binding protein, 24.2 2.7E+02 0.0059 27.1 6.6 40 213-253 175-215 (684)
233 PF14480 DNA_pol3_a_NI: DNA po 24.0 1.4E+02 0.003 20.1 3.7 33 225-260 12-44 (76)
234 PRK09570 rpoH DNA-directed RNA 23.6 2E+02 0.0044 20.1 4.4 23 240-264 55-77 (79)
235 PF03468 XS: XS domain; Inter 23.5 55 0.0012 24.7 1.7 55 32-96 27-81 (116)
236 cd00027 BRCT Breast Cancer Sup 22.9 1.5E+02 0.0032 18.4 3.7 28 215-243 3-30 (72)
237 COG5353 Uncharacterized protei 22.7 3.8E+02 0.0082 21.3 6.2 54 115-168 86-154 (161)
238 PRK11558 putative ssRNA endonu 22.4 1.6E+02 0.0035 21.6 3.8 49 117-166 28-76 (97)
239 KOG1295 Nonsense-mediated deca 21.8 1.3E+02 0.0028 27.7 3.9 64 117-180 8-77 (376)
240 PF07576 BRAP2: BRCA1-associat 21.5 2.1E+02 0.0045 21.4 4.5 55 30-97 21-76 (110)
241 TIGR03636 L23_arch archaeal ri 21.4 1.5E+02 0.0033 20.6 3.5 35 215-249 15-49 (77)
242 COG3254 Uncharacterized conser 21.3 3.3E+02 0.0072 20.2 5.3 42 131-173 27-68 (105)
243 COG0030 KsgA Dimethyladenosine 20.8 1.3E+02 0.0028 26.2 3.6 32 117-148 96-127 (259)
244 PF14893 PNMA: PNMA 20.2 86 0.0019 28.3 2.5 50 115-164 17-70 (331)
No 1
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=5.1e-35 Score=264.32 Aligned_cols=215 Identities=18% Similarity=0.267 Sum_probs=170.0
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC----C
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ----G 98 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~----g 98 (264)
.++.++||++++|+++|+++|++||+|.+|++++++.+++++ |||||+|.+.+ +|.+|+..+++ |
T Consensus 4 ~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~-------g~afV~f~~~~----~A~~Ai~~l~g~~l~g 72 (352)
T TIGR01661 4 TNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSL-------GYGFVNYVRPE----DAEKAVNSLNGLRLQN 72 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccc-------eEEEEEECcHH----HHHHHHhhcccEEECC
Confidence 468899999999999999999999999999999999988999 99999999999 88899988887 2
Q ss_pred CcCCCCcchhcccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-Hh
Q 024698 99 RKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NL 175 (264)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~l 175 (264)
+. +...............+|||+|||+.+++++|+++|++||+|..++++.+.. .++|||||+|.+.++|.+|+ .|
T Consensus 73 ~~-i~v~~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l 151 (352)
T TIGR01661 73 KT-IKVSYARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTL 151 (352)
T ss_pred ee-EEEEeecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHh
Confidence 22 1111111222233456899999999999999999999999999999988764 47899999999999999999 89
Q ss_pred CCceeCC--eeEEEeeCCCCCCCCC------------CC------------------------C----------------
Q 024698 176 GGTMLGY--YPVRVLPSKTAILPVN------------PT------------------------F---------------- 201 (264)
Q Consensus 176 n~~~~~g--~~i~V~~~~~~~~~~~------------~~------------------------~---------------- 201 (264)
||..+.| ++|.|.++..+..... +. +
T Consensus 152 ~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (352)
T TIGR01661 152 NGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQ 231 (352)
T ss_pred CCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhh
Confidence 9999977 6788888643320000 00 0
Q ss_pred -------------CCCChhh-------------hcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeeccc
Q 024698 202 -------------LPRSEDE-------------REMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIIL 251 (264)
Q Consensus 202 -------------~~~~~~~-------------~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d~ 251 (264)
.+..... ......+|||+|||+++++++|+++|++| |.|.+++|+.|.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~f--G~v~~v~i~~d~ 305 (352)
T TIGR01661 232 QHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPF--GAVQNVKIIRDL 305 (352)
T ss_pred hcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhC--CCeEEEEEeEcC
Confidence 0000000 00123369999999999999999999999 999999999885
No 2
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=3.3e-33 Score=267.27 Aligned_cols=204 Identities=22% Similarity=0.320 Sum_probs=171.0
Q ss_pred CcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC----CC
Q 024698 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ----GR 99 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~----g~ 99 (264)
++.+.||+.++|+++|+++|++||+|.+|+|.++..+++++ |||||+|.+.+ +|.+|+..+++ |+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~-------G~afV~F~~~~----~A~~Al~~ln~~~i~gk 70 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSL-------GYGYVNFQNPA----DAERALETMNFKRLGGK 70 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcc-------eEEEEEECCHH----HHHHHHHHhCCCEECCe
Confidence 46789999999999999999999999999999999988999 99999999999 88899988876 22
Q ss_pred cCCCCcchhcccCC----CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHH-
Q 024698 100 KRLSGRAFRAQRED----SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAAL- 173 (264)
Q Consensus 100 ~~~~~~~~~~~~~~----~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al- 173 (264)
. .+..+..+++ ....+|||+|||.++++++|+++|++||.|.+|++..+.. .++|||||+|.+.++|.+|+
T Consensus 71 ~---i~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~ 147 (562)
T TIGR01628 71 P---IRIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQ 147 (562)
T ss_pred e---EEeecccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHH
Confidence 2 1122222222 2345799999999999999999999999999999998876 48999999999999999999
Q ss_pred HhCCceeCCeeEEEeeCCCCCCCCCCCCCCCChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeecccc
Q 024698 174 NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIILF 252 (264)
Q Consensus 174 ~ln~~~~~g~~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d~~ 252 (264)
++||..+.|+.|.|........ +. .......++|||+|||.++|+++|+++|++| |.|+++.++.|..
T Consensus 148 ~lng~~~~~~~i~v~~~~~~~~--------~~-~~~~~~~~~l~V~nl~~~~tee~L~~~F~~f--G~i~~~~i~~~~~ 215 (562)
T TIGR01628 148 KVNGMLLNDKEVYVGRFIKKHE--------RE-AAPLKKFTNLYVKNLDPSVNEDKLRELFAKF--GEITSAAVMKDGS 215 (562)
T ss_pred HhcccEecCceEEEeccccccc--------cc-cccccCCCeEEEeCCCCcCCHHHHHHHHHhc--CCEEEEEEEECCC
Confidence 8999999999999986432110 00 1112356789999999999999999999999 9999999998743
No 3
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1e-32 Score=229.15 Aligned_cols=216 Identities=17% Similarity=0.218 Sum_probs=174.0
Q ss_pred CcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccCCCc---
Q 024698 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRK--- 100 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~g~~--- 100 (264)
|+-+.=|+..||++|||.+|+..|+|.+|++++|+.+|.+- ||+||.|.+++ +|++|++.+||=+-
T Consensus 43 NLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSL-------GYGFVNYv~p~----DAe~AintlNGLrLQ~K 111 (360)
T KOG0145|consen 43 NLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSL-------GYGFVNYVRPK----DAEKAINTLNGLRLQNK 111 (360)
T ss_pred eeeeeecccccCHHHHHHHhhcccceeeeeeeecccccccc-------ccceeeecChH----HHHHHHhhhcceeeccc
Confidence 34455588999999999999999999999999999999999 99999999999 99999999998332
Q ss_pred CCCCcchhcccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHH-HhCC
Q 024698 101 RLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAAL-NLGG 177 (264)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~~g~afV~f~~~e~a~~Al-~ln~ 177 (264)
.+.....++..+......|||++||..+|..||+++|++||.|...+|+.|..+ ++|.|||.|+...+|+.|| .|||
T Consensus 112 TIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG 191 (360)
T KOG0145|consen 112 TIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNG 191 (360)
T ss_pred eEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccC
Confidence 222222233334445678999999999999999999999999999999888764 8999999999999999999 7999
Q ss_pred ceeCC--eeEEEeeCCCCCCCCC--------------------------------------CCCCCCChhh---------
Q 024698 178 TMLGY--YPVRVLPSKTAILPVN--------------------------------------PTFLPRSEDE--------- 208 (264)
Q Consensus 178 ~~~~g--~~i~V~~~~~~~~~~~--------------------------------------~~~~~~~~~~--------- 208 (264)
+.-.| .+|.|..+..+..... .++.|-..+.
T Consensus 192 ~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~l 271 (360)
T KOG0145|consen 192 QKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNL 271 (360)
T ss_pred CCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeecc
Confidence 99877 4788887644321000 0111111110
Q ss_pred --hcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeecccc
Q 024698 209 --REMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIILF 252 (264)
Q Consensus 209 --~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d~~ 252 (264)
.....++|||.||.++.+|.-|+++|.+| |.|++|++++|+-
T Consensus 272 p~~~~~g~ciFvYNLspd~de~~LWQlFgpF--GAv~nVKvirD~t 315 (360)
T KOG0145|consen 272 PGGPGGGWCIFVYNLSPDADESILWQLFGPF--GAVTNVKVIRDFT 315 (360)
T ss_pred CCCCCCeeEEEEEecCCCchHhHHHHHhCcc--cceeeEEEEecCC
Confidence 12256899999999999999999999999 9999999999975
No 4
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.98 E-value=1.1e-31 Score=237.36 Aligned_cols=210 Identities=16% Similarity=0.157 Sum_probs=171.5
Q ss_pred cccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccCCCcCCCC
Q 024698 25 LETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSG 104 (264)
Q Consensus 25 ~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~g~~~~~~ 104 (264)
-++-.|+-++.|+||+.+|++.|+|-++|+++|+.+|.+| |||||+|.+.+ +|++|++.||+-..+...
T Consensus 86 VfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nR-------GYAFVtf~~Ke----~Aq~Aik~lnn~Eir~GK 154 (506)
T KOG0117|consen 86 VFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNR-------GYAFVTFCTKE----EAQEAIKELNNYEIRPGK 154 (506)
T ss_pred EEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCc-------ceEEEEeecHH----HHHHHHHHhhCccccCCC
Confidence 4777899999999999999999999999999999888999 99999999999 888999999873222111
Q ss_pred cchhcccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCC-eeEEEEecCC---CCCceEEEEEecCHHHHHHHH-H-hCC-
Q 024698 105 RAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQ-VVDCRVCGDP---HSVLRFAFVEFADEHGARAAL-N-LGG- 177 (264)
Q Consensus 105 ~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~v~i~~d~---~~~~g~afV~f~~~e~a~~Al-~-ln~- 177 (264)
..... .......|||||+|.+.++++|.+.+++.++ |.+|.+...+ .+++|||||+|.++..|..|- + +++
T Consensus 155 ~igvc--~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~ 232 (506)
T KOG0117|consen 155 LLGVC--VSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGK 232 (506)
T ss_pred EeEEE--EeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCc
Confidence 11111 1124567999999999999999999999885 5666665443 358999999999999999888 5 444
Q ss_pred ceeCCeeEEEeeCCCCCCCCCCCCCCCChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeeccccceeeE
Q 024698 178 TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIILFYFHLF 257 (264)
Q Consensus 178 ~~~~g~~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d~~~~~~~ 257 (264)
..++|+.+.|.|+.+...+. .+.......|||+||+.++|++.|+++|++| |.|++|+.++|++|+||.
T Consensus 233 ~klwgn~~tVdWAep~~e~d---------ed~ms~VKvLYVRNL~~~tTeE~lk~~F~~~--G~veRVkk~rDYaFVHf~ 301 (506)
T KOG0117|consen 233 IKLWGNAITVDWAEPEEEPD---------EDTMSKVKVLYVRNLMESTTEETLKKLFNEF--GKVERVKKPRDYAFVHFA 301 (506)
T ss_pred eeecCCcceeeccCcccCCC---------hhhhhheeeeeeeccchhhhHHHHHHHHHhc--cceEEeecccceeEEeec
Confidence 44799999999976543221 1123467899999999999999999999999 899999999999999996
Q ss_pred E
Q 024698 258 I 258 (264)
Q Consensus 258 ~ 258 (264)
-
T Consensus 302 e 302 (506)
T KOG0117|consen 302 E 302 (506)
T ss_pred c
Confidence 3
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=9.8e-31 Score=250.23 Aligned_cols=215 Identities=17% Similarity=0.269 Sum_probs=170.2
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC----C
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ----G 98 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~----g 98 (264)
.+..++||+.++|+++|+++|++||.|.+|+++.+.. ++++ |||||+|.+.+ +|.+|+..+++ |
T Consensus 89 ~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~-g~sk-------g~afV~F~~~e----~A~~Ai~~lng~~~~~ 156 (562)
T TIGR01628 89 GNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDEN-GKSR-------GYGFVHFEKEE----SAKAAIQKVNGMLLND 156 (562)
T ss_pred CceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCC-CCcc-------cEEEEEECCHH----HHHHHHHHhcccEecC
Confidence 3689999999999999999999999999999998864 4788 99999999999 88888888876 2
Q ss_pred Cc-CCCCcchhc---ccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHH
Q 024698 99 RK-RLSGRAFRA---QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAAL 173 (264)
Q Consensus 99 ~~-~~~~~~~~~---~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al 173 (264)
+. .+....... .......++|||+|||.++|+++|+++|++||+|.++.+..+.. .++|||||+|.+.++|.+|+
T Consensus 157 ~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av 236 (562)
T TIGR01628 157 KEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAV 236 (562)
T ss_pred ceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHH
Confidence 22 111111111 11223456799999999999999999999999999999998865 57899999999999999999
Q ss_pred -HhCCceeC----CeeEEEeeCCCCCCCC---CCCCCC-CChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEE
Q 024698 174 -NLGGTMLG----YYPVRVLPSKTAILPV---NPTFLP-RSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRT 244 (264)
Q Consensus 174 -~ln~~~~~----g~~i~V~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~ 244 (264)
.+||..+. |+.+.|.++....... ...+.. +.+........+|||+||++++++++|+++|++| |.|++
T Consensus 237 ~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~--G~i~~ 314 (562)
T TIGR01628 237 EEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSEC--GEITS 314 (562)
T ss_pred HHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhc--CCeEE
Confidence 89999999 9999998864322100 000000 0001112356789999999999999999999999 89999
Q ss_pred EEeeccc
Q 024698 245 LPCMIIL 251 (264)
Q Consensus 245 v~l~~d~ 251 (264)
++++.|.
T Consensus 315 ~~i~~d~ 321 (562)
T TIGR01628 315 AKVMLDE 321 (562)
T ss_pred EEEEECC
Confidence 9999884
No 6
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=5.1e-31 Score=248.11 Aligned_cols=212 Identities=17% Similarity=0.123 Sum_probs=166.4
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccCCCcCC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKRL 102 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~g~~~~ 102 (264)
.+.++.||+.++|+++|+++|++||+|.+|+|++| .++++| |||||+|.+.+ +|.+|+..+++-..+-
T Consensus 59 ~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sR-------GfaFV~F~~~e----~A~~Ai~~lng~~i~~ 126 (578)
T TIGR01648 59 CEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNR-------GYAFVTFCGKE----EAKEAVKLLNNYEIRP 126 (578)
T ss_pred CEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCcc-------ceEEEEeCCHH----HHHHHHHHcCCCeecC
Confidence 47899999999999999999999999999999999 667999 99999999999 8889999888622110
Q ss_pred CCcchhcccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCC-eeEEEEec---CCCCCceEEEEEecCHHHHHHHH-HhC-
Q 024698 103 SGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQ-VVDCRVCG---DPHSVLRFAFVEFADEHGARAAL-NLG- 176 (264)
Q Consensus 103 ~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~v~i~~---d~~~~~g~afV~f~~~e~a~~Al-~ln- 176 (264)
...... ......++|||+|||+++|+++|.+.|++++. +..+.+.. +..+++|||||+|.++++|..|+ +|+
T Consensus 127 Gr~l~V--~~S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~ 204 (578)
T TIGR01648 127 GRLLGV--CISVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMP 204 (578)
T ss_pred Cccccc--cccccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhc
Confidence 000000 11124678999999999999999999999874 44444432 22357899999999999999999 664
Q ss_pred -CceeCCeeEEEeeCCCCCCCCCCCCCCCChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeecccccee
Q 024698 177 -GTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIILFYFH 255 (264)
Q Consensus 177 -~~~~~g~~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d~~~~~ 255 (264)
...++|+.|.|.|+.+.... ........++|||+|||.++++++|+++|++|-.|+|++|++++|+++++
T Consensus 205 gki~l~Gr~I~VdwA~p~~~~---------d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rgfAFVe 275 (578)
T TIGR01648 205 GRIQLWGHVIAVDWAEPEEEV---------DEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRDYAFVH 275 (578)
T ss_pred cceEecCceEEEEeecccccc---------cccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecCeEEEE
Confidence 34679999999997543211 01111246789999999999999999999996324999999999999888
Q ss_pred eE
Q 024698 256 LF 257 (264)
Q Consensus 256 ~~ 257 (264)
|.
T Consensus 276 F~ 277 (578)
T TIGR01648 276 FE 277 (578)
T ss_pred eC
Confidence 74
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=2.4e-28 Score=229.47 Aligned_cols=214 Identities=16% Similarity=0.128 Sum_probs=158.3
Q ss_pred CcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhcc--C----
Q 024698 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFN--Q---- 97 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~--~---- 97 (264)
...++||++++|+++|+++|++||+|.+|++++ +| |||||+|.+.+ +|.+|+..++ +
T Consensus 4 vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~------~k-------~~afVef~~~e----~A~~Ai~~~~~~~~~l~ 66 (481)
T TIGR01649 4 VVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP------GK-------RQALVEFEDEE----SAKACVNFATSVPIYIR 66 (481)
T ss_pred EEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC------CC-------CEEEEEeCchH----HHHHHHHHhhcCCceEc
Confidence 357899999999999999999999999999985 34 99999999999 7778877643 2
Q ss_pred CCc-CC--CCcc--hhc------ccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCH
Q 024698 98 GRK-RL--SGRA--FRA------QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADE 166 (264)
Q Consensus 98 g~~-~~--~~~~--~~~------~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~ 166 (264)
|+. ++ +... ... ...+....+|||+||++.+|+++|+++|++||+|..|.+.++.. +|+|||+|.+.
T Consensus 67 g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~--~~~afVef~~~ 144 (481)
T TIGR01649 67 GQPAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN--VFQALVEFESV 144 (481)
T ss_pred CeEEEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC--ceEEEEEECCH
Confidence 332 11 1000 000 00111223699999999999999999999999999999987653 47999999999
Q ss_pred HHHHHHH-HhCCceeCC--eeEEEeeCCCCCCC------CC-----CCC------CC------CCh--------------
Q 024698 167 HGARAAL-NLGGTMLGY--YPVRVLPSKTAILP------VN-----PTF------LP------RSE-------------- 206 (264)
Q Consensus 167 e~a~~Al-~ln~~~~~g--~~i~V~~~~~~~~~------~~-----~~~------~~------~~~-------------- 206 (264)
++|.+|+ .|||..+.| +.|+|.+++..... .. |.. .. +.+
T Consensus 145 ~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 224 (481)
T TIGR01649 145 NSAQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDG 224 (481)
T ss_pred HHHHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcc
Confidence 9999999 799999964 58999887642210 00 000 00 000
Q ss_pred --------------------------------------------hhhcCCCCeEEEcCCCC-CCCHHHHHHHHhhcCCCc
Q 024698 207 --------------------------------------------DEREMCSRTVYCTNIDK-KVPQAEVKQFFEAACGGE 241 (264)
Q Consensus 207 --------------------------------------------~~~~~~~~~i~v~nL~~-~~te~~L~~~F~~~~gG~ 241 (264)
........+|||+|||+ .+++++|+++|++| |.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~y--G~ 302 (481)
T TIGR01649 225 YSSHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVY--GN 302 (481)
T ss_pred cccCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhc--CC
Confidence 00012457999999998 69999999999999 99
Q ss_pred eEEEEeeccccceeeEE
Q 024698 242 VRTLPCMIILFYFHLFI 258 (264)
Q Consensus 242 I~~v~l~~d~~~~~~~~ 258 (264)
|.+|+|++|..++.|+.
T Consensus 303 V~~vki~~~~~g~afV~ 319 (481)
T TIGR01649 303 VERVKFMKNKKETALIE 319 (481)
T ss_pred eEEEEEEeCCCCEEEEE
Confidence 99999998865555444
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=4.2e-28 Score=227.76 Aligned_cols=207 Identities=21% Similarity=0.227 Sum_probs=158.5
Q ss_pred CcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC----CC
Q 024698 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ----GR 99 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~----g~ 99 (264)
.....|+++.+|+++|+++|++||+|.+|.+.++..+ |+|||+|.+.+ +|.+|+..||| ++
T Consensus 98 ~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~-----------~~afVef~~~~----~A~~A~~~Lng~~i~~~ 162 (481)
T TIGR01649 98 RVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNV-----------FQALVEFESVN----SAQHAKAALNGADIYNG 162 (481)
T ss_pred EEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCc-----------eEEEEEECCHH----HHHHHHHHhcCCcccCC
Confidence 4578899999999999999999999999999876543 89999999999 88888888887 21
Q ss_pred -c----------CCC-----Ccc------------h---------hcc--------------------------------
Q 024698 100 -K----------RLS-----GRA------------F---------RAQ-------------------------------- 110 (264)
Q Consensus 100 -~----------~~~-----~~~------------~---------~~~-------------------------------- 110 (264)
+ .+. ... . ...
T Consensus 163 ~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 242 (481)
T TIGR01649 163 CCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMG 242 (481)
T ss_pred ceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCC
Confidence 0 000 000 0 000
Q ss_pred ---------------------------cCCCCCCEEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEE
Q 024698 111 ---------------------------REDSVRRTVYVSDIDQ-NITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVE 162 (264)
Q Consensus 111 ---------------------------~~~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~ 162 (264)
.......+|||+|||+ .+|+++|+++|+.||.|..|+++.++ +|||||+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~---~g~afV~ 319 (481)
T TIGR01649 243 PPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK---KETALIE 319 (481)
T ss_pred CcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC---CCEEEEE
Confidence 0011346899999997 69999999999999999999998873 5899999
Q ss_pred ecCHHHHHHHH-HhCCceeCCeeEEEeeCCCCCCCCCC------------CCCCCC-hh----------hhcCCCCeEEE
Q 024698 163 FADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNP------------TFLPRS-ED----------EREMCSRTVYC 218 (264)
Q Consensus 163 f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~~~~~~~~------------~~~~~~-~~----------~~~~~~~~i~v 218 (264)
|.+.++|..|+ .|||..+.|++|+|.+++........ .+.... .+ ....+..+|||
T Consensus 320 f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v 399 (481)
T TIGR01649 320 MADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHL 399 (481)
T ss_pred ECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEE
Confidence 99999999999 79999999999999988643211000 010000 00 00124578999
Q ss_pred cCCCCCCCHHHHHHHHhhcCCCc--eEEEEeecc
Q 024698 219 TNIDKKVPQAEVKQFFEAACGGE--VRTLPCMII 250 (264)
Q Consensus 219 ~nL~~~~te~~L~~~F~~~~gG~--I~~v~l~~d 250 (264)
+|||.++++++|+++|++| |. |+++++..+
T Consensus 400 ~NLp~~~tee~L~~lF~~~--G~~~i~~ik~~~~ 431 (481)
T TIGR01649 400 SNIPLSVSEEDLKELFAEN--GVHKVKKFKFFPK 431 (481)
T ss_pred ecCCCCCCHHHHHHHHHhc--CCccceEEEEecC
Confidence 9999999999999999999 87 899988754
No 9
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.96 E-value=1.8e-28 Score=219.94 Aligned_cols=160 Identities=23% Similarity=0.306 Sum_probs=134.9
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccCCC--
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGR-- 99 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~g~-- 99 (264)
+.++++.||++++|+++|+++|++||+|.+|+|+.+..++++| |||||+|.+++ +|.+|+..|++-.
T Consensus 107 ~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~sr-------GyaFVeF~~~e----~A~~Ai~~LnG~~l~ 175 (346)
T TIGR01659 107 GTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSF-------GYAFVDFGSEA----DSQRAIKNLNGITVR 175 (346)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccC-------cEEEEEEccHH----HHHHHHHHcCCCccC
Confidence 3478999999999999999999999999999999999998999 99999999999 8889998888721
Q ss_pred -cCCCCcchhcccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-Hh
Q 024698 100 -KRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NL 175 (264)
Q Consensus 100 -~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~l 175 (264)
+++...............+|||+|||+++|+++|+++|++||+|..++|+.|+. .++|||||+|.+.++|++|| .|
T Consensus 176 gr~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l 255 (346)
T TIGR01659 176 NKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISAL 255 (346)
T ss_pred CceeeeecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHh
Confidence 111111111111223467899999999999999999999999999999998875 47899999999999999999 89
Q ss_pred CCceeCC--eeEEEeeCCC
Q 024698 176 GGTMLGY--YPVRVLPSKT 192 (264)
Q Consensus 176 n~~~~~g--~~i~V~~~~~ 192 (264)
|+..+.+ ++|+|.++..
T Consensus 256 ng~~~~g~~~~l~V~~a~~ 274 (346)
T TIGR01659 256 NNVIPEGGSQPLTVRLAEE 274 (346)
T ss_pred CCCccCCCceeEEEEECCc
Confidence 9999866 7899988754
No 10
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.96 E-value=3e-27 Score=220.82 Aligned_cols=157 Identities=18% Similarity=0.246 Sum_probs=130.9
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC----C
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ----G 98 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~----g 98 (264)
.+..+.||++++|+++|+++|++||+|.+|+++.+..+++++ |||||+|.+.+ +|.+|+. +++ |
T Consensus 90 ~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~sk-------g~afVeF~~~e----~A~~Al~-l~g~~~~g 157 (457)
T TIGR01622 90 RTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSK-------GVAYVEFYDVE----SVIKALA-LTGQMLLG 157 (457)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcc-------eEEEEEECCHH----HHHHHHH-hCCCEECC
Confidence 468899999999999999999999999999999999988999 99999999999 7777775 454 2
Q ss_pred Cc-CCCCcc----------hhcccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecC
Q 024698 99 RK-RLSGRA----------FRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFAD 165 (264)
Q Consensus 99 ~~-~~~~~~----------~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~ 165 (264)
+. .+.... ..........++|||+|||+.+|+++|+++|++||.|..|.++.++. .++|||||+|.+
T Consensus 158 ~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~ 237 (457)
T TIGR01622 158 RPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHD 237 (457)
T ss_pred eeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECC
Confidence 22 100000 00000111357899999999999999999999999999999998876 478999999999
Q ss_pred HHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 166 EHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 166 ~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
.++|.+|+ .|||..+.|++|+|.++.
T Consensus 238 ~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 238 AEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred HHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 99999999 799999999999999953
No 11
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=2.7e-26 Score=217.13 Aligned_cols=208 Identities=15% Similarity=0.159 Sum_probs=150.9
Q ss_pred CCcccccccchhcHHHHHHHhhcc------------CCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHH
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKL------------NPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRR 90 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~------------G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~ 90 (264)
..+++.||++++|+++|+++|+++ +.|..+.+ ++.+ |||||+|.+.+ +|..
T Consensus 176 r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~k-------g~afVeF~~~e----~A~~ 238 (509)
T TIGR01642 176 RRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEK-------NFAFLEFRTVE----EATF 238 (509)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCC-------CEEEEEeCCHH----HHhh
Confidence 467899999999999999999986 23333333 2445 99999999999 7777
Q ss_pred HHhhccC----CCc-CCCCcchhc---------------------------ccCCCCCCEEEEcCCCCCCCHHHHHHHhh
Q 024698 91 RRNNFNQ----GRK-RLSGRAFRA---------------------------QREDSVRRTVYVSDIDQNITEERLAGLFS 138 (264)
Q Consensus 91 a~~~~~~----g~~-~~~~~~~~~---------------------------~~~~~~~~~lfV~nLp~~~te~~L~~~F~ 138 (264)
|+ .+++ |.. ++..+..+. .......++|||+|||+.+|+++|+++|+
T Consensus 239 Al-~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~ 317 (509)
T TIGR01642 239 AM-ALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLE 317 (509)
T ss_pred hh-cCCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 77 3655 222 111100000 00112346899999999999999999999
Q ss_pred cCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCCCCCCCCCCCCC---------CC-
Q 024698 139 SCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLP---------RS- 205 (264)
Q Consensus 139 ~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~~~~~~~~~~~~---------~~- 205 (264)
+||.|..+.++.+.. .++|||||+|.+.+.|..|+ .|||..+.|+.|.|.++............. ..
T Consensus 318 ~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (509)
T TIGR01642 318 SFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKAL 397 (509)
T ss_pred hcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccc
Confidence 999999999998865 47899999999999999999 899999999999999975432211110000 00
Q ss_pred h----hhhcCCCCeEEEcCCCCC--C--------CHHHHHHHHhhcCCCceEEEEeecc
Q 024698 206 E----DEREMCSRTVYCTNIDKK--V--------PQAEVKQFFEAACGGEVRTLPCMII 250 (264)
Q Consensus 206 ~----~~~~~~~~~i~v~nL~~~--~--------te~~L~~~F~~~~gG~I~~v~l~~d 250 (264)
. ........+|+|.|+... + ..++|+++|++| |.|++|.|+++
T Consensus 398 ~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~--G~v~~v~i~~~ 454 (509)
T TIGR01642 398 SQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKY--GPLINIVIPRP 454 (509)
T ss_pred hhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhc--CCeeEEEeecc
Confidence 0 001224678999999632 1 126799999999 99999999976
No 12
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.95 E-value=3.5e-27 Score=222.66 Aligned_cols=158 Identities=16% Similarity=0.261 Sum_probs=136.0
Q ss_pred CcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC----CC
Q 024698 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ----GR 99 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~----g~ 99 (264)
..++.||++++|+++|+++|++||+|.+|+++.++.++++| |||||+|.+.+ +|.+|+..+++ |+
T Consensus 109 rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~Tgksk-------GfAFVeF~s~e----~A~~Ai~~lnG~~i~GR 177 (612)
T TIGR01645 109 RVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHK-------GFAFVEYEVPE----AAQLALEQMNGQMLGGR 177 (612)
T ss_pred EEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcC-------CeEEEEeCcHH----HHHHHHHhcCCeEEecc
Confidence 56899999999999999999999999999999999999999 99999999999 88899998887 44
Q ss_pred c-CCCCcchhc---------ccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHH
Q 024698 100 K-RLSGRAFRA---------QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEH 167 (264)
Q Consensus 100 ~-~~~~~~~~~---------~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e 167 (264)
. ++....... .......++|||+|||+++++++|+++|+.||+|.+++|.+|+. .++|||||+|.+.+
T Consensus 178 ~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e 257 (612)
T TIGR01645 178 NIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQ 257 (612)
T ss_pred eeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHH
Confidence 3 222111111 11112346899999999999999999999999999999999876 37899999999999
Q ss_pred HHHHHH-HhCCceeCCeeEEEeeCCC
Q 024698 168 GARAAL-NLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 168 ~a~~Al-~ln~~~~~g~~i~V~~~~~ 192 (264)
+|.+|+ .||+..++|+.|+|.++.+
T Consensus 258 ~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 258 SQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred HHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 999999 8999999999999998754
No 13
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1.4e-26 Score=209.22 Aligned_cols=220 Identities=21% Similarity=0.234 Sum_probs=166.1
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC----C
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ----G 98 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~----g 98 (264)
.++.+.++++..+.++|.++||.+|+|..|.+..+...+.+| ||+||.|.-.+|++ +|+....+ |
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~R-------GfgfVtFam~ED~q----rA~~e~~~~kf~G 74 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKR-------GFGFVTFAMEEDVQ----RALAETEQSKFEG 74 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCccccc-------CccceeeehHhHHH----HHHHHhhcCcccc
Confidence 678999999999999999999999999999999999988899 99999999999554 55444433 2
Q ss_pred Cc--------CCCCc---------chh--ccc----C--CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC
Q 024698 99 RK--------RLSGR---------AFR--AQR----E--DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH 153 (264)
Q Consensus 99 ~~--------~~~~~---------~~~--~~~----~--~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~ 153 (264)
+. +.... ... .+. . ....-.|.|.|||+.+.+++|+.+|+.||.|..|.|++...
T Consensus 75 r~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d 154 (678)
T KOG0127|consen 75 RILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD 154 (678)
T ss_pred eecccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC
Confidence 21 00000 000 000 0 11134699999999999999999999999999999997766
Q ss_pred C-CceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCCCCC--C--------C----------C-CC-----CC---
Q 024698 154 S-VLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAIL--P--------V----------N-PT-----FL--- 202 (264)
Q Consensus 154 ~-~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~~~~--~--------~----------~-~~-----~~--- 202 (264)
. -.|||||+|....+|.+|+ .+|+..|.||+|-|.|+-..-. . . . +. +.
T Consensus 155 gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed 234 (678)
T KOG0127|consen 155 GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEED 234 (678)
T ss_pred CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhc
Confidence 3 4599999999999999999 7999999999999999521100 0 0 0 00 00
Q ss_pred ------CCC---------------h------h--------------------hhcCCCCeEEEcCCCCCCCHHHHHHHHh
Q 024698 203 ------PRS---------------E------D--------------------EREMCSRTVYCTNIDKKVPQAEVKQFFE 235 (264)
Q Consensus 203 ------~~~---------------~------~--------------------~~~~~~~~i~v~nL~~~~te~~L~~~F~ 235 (264)
... + + ....-..+|||+|||+++|+++|...|+
T Consensus 235 ~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fs 314 (678)
T KOG0127|consen 235 GEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFS 314 (678)
T ss_pred ccccccccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHH
Confidence 000 0 0 0001236899999999999999999999
Q ss_pred hcCCCceEEEEeecccccee
Q 024698 236 AACGGEVRTLPCMIILFYFH 255 (264)
Q Consensus 236 ~~~gG~I~~v~l~~d~~~~~ 255 (264)
+| |+|.++.|..|.+.-|
T Consensus 315 kF--G~v~ya~iV~~k~T~~ 332 (678)
T KOG0127|consen 315 KF--GEVKYAIIVKDKDTGH 332 (678)
T ss_pred hh--ccceeEEEEeccCCCC
Confidence 99 9999999998876554
No 14
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=4.6e-26 Score=190.48 Aligned_cols=154 Identities=20% Similarity=0.274 Sum_probs=133.5
Q ss_pred ccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC---CCc--
Q 024698 26 ETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ---GRK-- 100 (264)
Q Consensus 26 ~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~---g~~-- 100 (264)
....|..+++-++||+.|.+||+|.+++|++|..|+|+| ||+||.|-..+ +|+.|+..||| |+|
T Consensus 66 fvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsK-------GYgFVSf~~k~----dAEnAI~~MnGqWlG~R~I 134 (321)
T KOG0148|consen 66 FVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSK-------GYGFVSFPNKE----DAENAIQQMNGQWLGRRTI 134 (321)
T ss_pred EehhcchhcchHHHHHHhccccccccceEeecccCCccc-------ceeEEeccchH----HHHHHHHHhCCeeecccee
Confidence 566788999999999999999999999999999999999 99999999999 89999999998 666
Q ss_pred CCCCcchhc--------------ccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCH
Q 024698 101 RLSGRAFRA--------------QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADE 166 (264)
Q Consensus 101 ~~~~~~~~~--------------~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~ 166 (264)
|.+....+. ........+|||||++..+||++|++.|++||+|.+||+.+++ ||+||.|.+.
T Consensus 135 RTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q----GYaFVrF~tk 210 (321)
T KOG0148|consen 135 RTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ----GYAFVRFETK 210 (321)
T ss_pred eccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc----ceEEEEecch
Confidence 211111110 1122246789999999999999999999999999999998875 5999999999
Q ss_pred HHHHHHH-HhCCceeCCeeEEEeeCCCCC
Q 024698 167 HGARAAL-NLGGTMLGYYPVRVLPSKTAI 194 (264)
Q Consensus 167 e~a~~Al-~ln~~~~~g~~i~V~~~~~~~ 194 (264)
|+|..|| .+|+.++.|+.+++.|-+...
T Consensus 211 EaAahAIv~mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 211 EAAAHAIVQMNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred hhHHHHHHHhcCceeCceEEEEeccccCC
Confidence 9999999 999999999999999976543
No 15
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=6.3e-26 Score=189.62 Aligned_cols=196 Identities=19% Similarity=0.292 Sum_probs=151.4
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccCCCcCC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKRL 102 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~g~~~~ 102 (264)
.++.+.||+.++||+=|..||++.|+|..|+|+.+.-. - ..+..- +.+.+
T Consensus 7 rtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~~-v--------------------------~wa~~p--~nQsk- 56 (321)
T KOG0148|consen 7 RTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDELK-V--------------------------NWATAP--GNQSK- 56 (321)
T ss_pred ceEEeeccChhhHHHHHHHHHHhccccccceeehhhhc-c--------------------------ccccCc--ccCCC-
Confidence 57899999999999999999999999999999987422 0 000000 11111
Q ss_pred CCcchhcccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHH-HhCCce
Q 024698 103 SGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAAL-NLGGTM 179 (264)
Q Consensus 103 ~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~~g~afV~f~~~e~a~~Al-~ln~~~ 179 (264)
......-.+||+.|.+.++.+.|++.|.+||+|.++++++|..+ +||||||.|-+.++|++|| .|||+.
T Consensus 57 --------~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqW 128 (321)
T KOG0148|consen 57 --------PTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQW 128 (321)
T ss_pred --------CccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCee
Confidence 11112456999999999999999999999999999999999984 8899999999999999999 899999
Q ss_pred eCCeeEEEeeCCCCCCCCCCCCCCCCh--hhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeeccccceeeE
Q 024698 180 LGYYPVRVLPSKTAILPVNPTFLPRSE--DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIILFYFHLF 257 (264)
Q Consensus 180 ~~g~~i~V~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d~~~~~~~ 257 (264)
|.+|.|+-.|+.......+.+...=.+ .......++|||+|++.-++|++|++.|++| |+|..|++.+|..+ .|
T Consensus 129 lG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~f--G~I~EVRvFk~qGY--aF 204 (321)
T KOG0148|consen 129 LGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPF--GPIQEVRVFKDQGY--AF 204 (321)
T ss_pred eccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccC--CcceEEEEecccce--EE
Confidence 999999999985432111110000000 1123468899999999999999999999999 99999999998544 55
Q ss_pred EEE
Q 024698 258 IYY 260 (264)
Q Consensus 258 ~~~ 260 (264)
++|
T Consensus 205 VrF 207 (321)
T KOG0148|consen 205 VRF 207 (321)
T ss_pred EEe
Confidence 554
No 16
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=6.4e-26 Score=204.69 Aligned_cols=197 Identities=22% Similarity=0.299 Sum_probs=167.5
Q ss_pred chhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccCCCc-CCCCcchhcc
Q 024698 32 SEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRK-RLSGRAFRAQ 110 (264)
Q Consensus 32 ~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~g~~-~~~~~~~~~~ 110 (264)
.++|+..|.++|+++|+++++++.+|. | +- |||||.|.+++ +|.+|+..+|.... ....+.+|++
T Consensus 8 ~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--sl-------gy~yvnf~~~~----da~~A~~~~n~~~~~~~~~rim~s~ 73 (369)
T KOG0123|consen 8 PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SL-------GYAYVNFQQPA----DAERALDTMNFDVLKGKPIRIMWSQ 73 (369)
T ss_pred CcCChHHHHHHhcccCCceeEEEeecC-C--cc-------ceEEEecCCHH----HHHHHHHHcCCcccCCcEEEeehhc
Confidence 788999999999999999999999999 7 77 99999999999 88899999987322 2224677787
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEee
Q 024698 111 REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLP 189 (264)
Q Consensus 111 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~ 189 (264)
+++.. +||.||++.++..+|.++|+.||+|.+|++..|...++|| ||+|+++++|.+|+ .+||..+.|+.|.|..
T Consensus 74 rd~~~---~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~ 149 (369)
T KOG0123|consen 74 RDPSL---VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGL 149 (369)
T ss_pred cCCce---eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEee
Confidence 77644 9999999999999999999999999999999999989999 99999999999999 8999999999999987
Q ss_pred CCCCCCCCCCCCCCCChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeeccccce
Q 024698 190 SKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIILFYF 254 (264)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d~~~~ 254 (264)
.........+... ......++++.|++.++++..|..+|.++ |+|+++.+++|-.+.
T Consensus 150 ~~~~~er~~~~~~------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~--g~i~s~~v~~~~~g~ 206 (369)
T KOG0123|consen 150 FERKEEREAPLGE------YKKRFTNVYVKNLEEDSTDEELKDLFSAY--GSITSVAVMRDSIGK 206 (369)
T ss_pred ccchhhhcccccc------hhhhhhhhheeccccccchHHHHHhhccc--CcceEEEEeecCCCC
Confidence 5322111111111 12246789999999999999999999999 999999999875553
No 17
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.94 E-value=1.3e-25 Score=202.97 Aligned_cols=158 Identities=17% Similarity=0.207 Sum_probs=131.5
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccCCCc--
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRK-- 100 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~g~~-- 100 (264)
.+....|++..+++++|+++|++||+|..++++.+..++.++ |||||+|.+.+ +|.+|+..+++...
T Consensus 90 ~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~-------g~~fv~f~~~~----~A~~ai~~l~g~~~~g 158 (352)
T TIGR01661 90 ANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSK-------GVGFIRFDKRD----EADRAIKTLNGTTPSG 158 (352)
T ss_pred ceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcC-------cEEEEEECCHH----HHHHHHHHhCCCccCC
Confidence 468899999999999999999999999999999998887888 99999999999 88888888886211
Q ss_pred -------CCCC-cc-------------------hh---------------------------------------------
Q 024698 101 -------RLSG-RA-------------------FR--------------------------------------------- 108 (264)
Q Consensus 101 -------~~~~-~~-------------------~~--------------------------------------------- 108 (264)
.... +. ..
T Consensus 159 ~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (352)
T TIGR01661 159 CTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQ 238 (352)
T ss_pred CceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccc
Confidence 0000 00 00
Q ss_pred ----c--c-----------------cCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEe
Q 024698 109 ----A--Q-----------------REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEF 163 (264)
Q Consensus 109 ----~--~-----------------~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f 163 (264)
. . ......++|||+|||+++++++|+++|++||.|.+++|++|+. .++|||||+|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F 318 (352)
T TIGR01661 239 HAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSM 318 (352)
T ss_pred cccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEE
Confidence 0 0 0001123699999999999999999999999999999999974 4889999999
Q ss_pred cCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 164 ADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 164 ~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
.+.++|.+|+ .|||..++||.|+|.+..
T Consensus 319 ~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 319 TNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 9999999999 799999999999999854
No 18
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.92 E-value=4.1e-24 Score=201.49 Aligned_cols=202 Identities=20% Similarity=0.206 Sum_probs=149.6
Q ss_pred CCcccccccchhcHHHHHHHhhccCC-ccEEEc-cccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccCCCc
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNP-LAKEFF-PSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRK 100 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~-i~~i~i-~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~g~~ 100 (264)
.++.+.||+.++|+++|++.|+++++ +.++.+ +.....++++ |||||+|.+++ +|.+|++.++.++.
T Consensus 139 ~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnR-------GFAFVeF~s~e----dAa~AirkL~~gki 207 (578)
T TIGR01648 139 CRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNR-------GFAFVEYESHR----AAAMARRKLMPGRI 207 (578)
T ss_pred ceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccC-------ceEEEEcCCHH----HHHHHHHHhhccce
Confidence 46899999999999999999999975 444433 3334445677 99999999999 77788877765432
Q ss_pred CCCC---cchhccc-------CCCCCCEEEEcCCCCCCCHHHHHHHhhcC--CCeeEEEEecCCCCCceEEEEEecCHHH
Q 024698 101 RLSG---RAFRAQR-------EDSVRRTVYVSDIDQNITEERLAGLFSSC--GQVVDCRVCGDPHSVLRFAFVEFADEHG 168 (264)
Q Consensus 101 ~~~~---~~~~~~~-------~~~~~~~lfV~nLp~~~te~~L~~~F~~~--G~i~~v~i~~d~~~~~g~afV~f~~~e~ 168 (264)
.+.+ ...+... .....++|||+|||+++|+++|+++|++| |+|..|+++ ++||||+|.+.++
T Consensus 208 ~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~------rgfAFVeF~s~e~ 281 (578)
T TIGR01648 208 QLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI------RDYAFVHFEDRED 281 (578)
T ss_pred EecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee------cCeEEEEeCCHHH
Confidence 1111 1111111 11135689999999999999999999999 999999874 4699999999999
Q ss_pred HHHHH-HhCCceeCCeeEEEeeCCCCCCCCCCC---------CCCCC-----hhhhcCCCCeEEEcCCCCCCCHHHHHHH
Q 024698 169 ARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPT---------FLPRS-----EDEREMCSRTVYCTNIDKKVPQAEVKQF 233 (264)
Q Consensus 169 a~~Al-~ln~~~~~g~~i~V~~~~~~~~~~~~~---------~~~~~-----~~~~~~~~~~i~v~nL~~~~te~~L~~~ 233 (264)
|.+|+ .||+..|.|+.|+|.|+++........ ...+. .........+++++|++...+++-++++
T Consensus 282 A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~ 361 (578)
T TIGR01648 282 AVKAMDELNGKELEGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHF 361 (578)
T ss_pred HHHHHHHhCCCEECCEEEEEEEccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhc
Confidence 99999 799999999999999986543210000 00000 0011225678999999999999999999
Q ss_pred HhhcCCCceE
Q 024698 234 FEAACGGEVR 243 (264)
Q Consensus 234 F~~~~gG~I~ 243 (264)
|... |.|.
T Consensus 362 f~~~--g~~~ 369 (578)
T TIGR01648 362 PRMP--GPIR 369 (578)
T ss_pred cccC--cccc
Confidence 9887 6764
No 19
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.92 E-value=5.6e-24 Score=190.99 Aligned_cols=124 Identities=21% Similarity=0.395 Sum_probs=110.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEe
Q 024698 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVL 188 (264)
Q Consensus 112 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~ 188 (264)
.....++|||+|||+++|+++|+++|+.||+|++|+|+.|.. .++|||||+|.++++|.+|+ +||+..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 334678899999999999999999999999999999999876 47899999999999999999 899999999999999
Q ss_pred eCCCCCCCCCCCCCCCChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeeccc
Q 024698 189 PSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIIL 251 (264)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d~ 251 (264)
++++.. . ....++|||+|||.+++|++|+++|++| |+|+.++|++|.
T Consensus 183 ~a~p~~-----------~---~~~~~~lfV~nLp~~vtee~L~~~F~~f--G~V~~v~i~~d~ 229 (346)
T TIGR01659 183 YARPGG-----------E---SIKDTNLYVTNLPRTITDDQLDTIFGKY--GQIVQKNILRDK 229 (346)
T ss_pred cccccc-----------c---ccccceeEEeCCCCcccHHHHHHHHHhc--CCEEEEEEeecC
Confidence 865321 0 1135689999999999999999999999 899999999884
No 20
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=7.5e-25 Score=193.31 Aligned_cols=159 Identities=19% Similarity=0.240 Sum_probs=132.3
Q ss_pred CcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccCCCc---
Q 024698 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRK--- 100 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~g~~--- 100 (264)
..++..++..++|+|||++|++||.|.+|.+++|+.++.++ |||||.|.+.+ +|.++++.++.-+.
T Consensus 36 KlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~-------gcCFv~~~trk----~a~~a~~Alhn~ktlpG 104 (510)
T KOG0144|consen 36 KLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSK-------GCCFVKYYTRK----EADEAINALHNQKTLPG 104 (510)
T ss_pred hheeccCCccccHHHHHHHHHHhCceeEEEeecccccCccc-------ceEEEEeccHH----HHHHHHHHhhcccccCC
Confidence 45788899999999999999999999999999999999999 99999999999 66677777765222
Q ss_pred ---CCCCcchhcccCC-CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHH-H
Q 024698 101 ---RLSGRAFRAQRED-SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAAL-N 174 (264)
Q Consensus 101 ---~~~~~~~~~~~~~-~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al-~ 174 (264)
.+..+....+++. ...++||||-|+..+||.+++++|++||.|++|+|++|.. .+||||||.|.+.|.|..|| .
T Consensus 105 ~~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika 184 (510)
T KOG0144|consen 105 MHHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKA 184 (510)
T ss_pred CCcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHh
Confidence 2222222222221 2467899999999999999999999999999999999987 59999999999999999999 7
Q ss_pred hCCce-eCC--eeEEEeeCCCC
Q 024698 175 LGGTM-LGY--YPVRVLPSKTA 193 (264)
Q Consensus 175 ln~~~-~~g--~~i~V~~~~~~ 193 (264)
|||.. +.| .+|.|.|+.+.
T Consensus 185 ~ng~~tmeGcs~PLVVkFADtq 206 (510)
T KOG0144|consen 185 LNGTQTMEGCSQPLVVKFADTQ 206 (510)
T ss_pred hccceeeccCCCceEEEecccC
Confidence 99865 455 58999997544
No 21
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.7e-23 Score=188.92 Aligned_cols=216 Identities=18% Similarity=0.264 Sum_probs=172.1
Q ss_pred cccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC----CCc
Q 024698 25 LETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ----GRK 100 (264)
Q Consensus 25 ~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~----g~~ 100 (264)
.+.||++.++|.++|.+.|+.||+|++|++.++..+ ++ || ||+|.+++ .|.+|+..+|| ++.
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g--~k-------g~-FV~f~~e~----~a~~ai~~~ng~ll~~kk 144 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG--SK-------GY-FVQFESEE----SAKKAIEKLNGMLLNGKK 144 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC--ce-------ee-EEEeCCHH----HHHHHHHHhcCcccCCCe
Confidence 589999999999999999999999999999999987 67 99 99999999 89999999988 333
Q ss_pred CCCC----cchhccc---CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCC-CceEEEEEecCHHHHHHH
Q 024698 101 RLSG----RAFRAQR---EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-VLRFAFVEFADEHGARAA 172 (264)
Q Consensus 101 ~~~~----~~~~~~~---~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~-~~g~afV~f~~~e~a~~A 172 (264)
..-+ ....... .......++|.|++.+++++.|..+|+.+|+|.++.++.+... ++||+||.|.+++.|..|
T Consensus 145 i~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~a 224 (369)
T KOG0123|consen 145 IYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKA 224 (369)
T ss_pred eEEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHH
Confidence 1111 1111101 1112345999999999999999999999999999999998874 799999999999999999
Q ss_pred H-HhCCceeCCeeEEEeeCCCCCCC----CCCCCCCCChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEe
Q 024698 173 L-NLGGTMLGYYPVRVLPSKTAILP----VNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPC 247 (264)
Q Consensus 173 l-~ln~~~~~g~~i~V~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l 247 (264)
+ .|++..+.+..+.|..+...... ..+-......+.......+|||.|++..++++.|+..|+.+ |+|++++|
T Consensus 225 v~~l~~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~--GeI~s~kv 302 (369)
T KOG0123|consen 225 VETLNGKIFGDKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSF--GEITSAKV 302 (369)
T ss_pred HHhccCCcCCccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcc--cceeeEEE
Confidence 9 89999999999999986542110 00000111112223467899999999999999999999999 99999999
Q ss_pred eccccceee
Q 024698 248 MIILFYFHL 256 (264)
Q Consensus 248 ~~d~~~~~~ 256 (264)
+.|..+-+.
T Consensus 303 ~~~~~g~sk 311 (369)
T KOG0123|consen 303 MVDENGKSK 311 (369)
T ss_pred EeccCCCcc
Confidence 998555443
No 22
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.89 E-value=2.7e-22 Score=189.62 Aligned_cols=132 Identities=23% Similarity=0.374 Sum_probs=109.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
..++|||+|||+++++++|+++|++||+|.+|+++.|+. .++|||||+|.+.++|.+|+ .|||..+.||.|+|.++.
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 456899999999999999999999999999999999875 48899999999999999999 799999999999998653
Q ss_pred CCCCCCCCCCCCCChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeeccc
Q 024698 192 TAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIIL 251 (264)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d~ 251 (264)
.... ..+ ..... .......++|||+|||+++++++|+++|++| |+|++++|++|.
T Consensus 186 ~~p~-a~~-~~~~~-~~~~~~~~rLfVgnLp~~vteedLk~lFs~F--G~I~svrl~~D~ 240 (612)
T TIGR01645 186 NMPQ-AQP-IIDMV-QEEAKKFNRIYVASVHPDLSETDIKSVFEAF--GEIVKCQLARAP 240 (612)
T ss_pred cccc-ccc-ccccc-cccccccceEEeecCCCCCCHHHHHHHHhhc--CCeeEEEEEecC
Confidence 2111 000 10000 0111245799999999999999999999999 899999999873
No 23
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.88 E-value=1.1e-22 Score=161.38 Aligned_cols=159 Identities=18% Similarity=0.330 Sum_probs=134.7
Q ss_pred CCCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC---
Q 024698 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ--- 97 (264)
Q Consensus 21 ~~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~--- 97 (264)
+..+...-||+..+|++-|.++|-+.|+|+++.+|+|+-+...+ ||||++|.+++ +|..|++-||.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~q-------GygF~Ef~~ee----dadYAikiln~VkL 76 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQ-------GYGFAEFRTEE----DADYAIKILNMVKL 76 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhccccc-------ceeEEEEechh----hhHHHHHHHHHHHh
Confidence 44688999999999999999999999999999999999987788 99999999999 77788888875
Q ss_pred -CCc-CCCCcchhcccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEE-EEecCCC--CCceEEEEEecCHHHHHHH
Q 024698 98 -GRK-RLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDC-RVCGDPH--SVLRFAFVEFADEHGARAA 172 (264)
Q Consensus 98 -g~~-~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v-~i~~d~~--~~~g~afV~f~~~e~a~~A 172 (264)
|++ +++.... .+..-.....|||+||.+.++|..|.+.|+.||.+.+. .+++|+. .++|||||.|.+.+.+.+|
T Consensus 77 YgrpIrv~kas~-~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~a 155 (203)
T KOG0131|consen 77 YGRPIRVNKASA-HQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAA 155 (203)
T ss_pred cCceeEEEeccc-ccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHH
Confidence 554 3333221 11222234679999999999999999999999998664 7777776 5889999999999999999
Q ss_pred H-HhCCceeCCeeEEEeeCC
Q 024698 173 L-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 173 l-~ln~~~~~g~~i~V~~~~ 191 (264)
+ .+||+.+.+++|.|..+.
T Consensus 156 i~s~ngq~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 156 IGSMNGQYLCNRPITVSYAF 175 (203)
T ss_pred HHHhccchhcCCceEEEEEE
Confidence 9 899999999999999864
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.86 E-value=1.6e-20 Score=175.44 Aligned_cols=133 Identities=25% Similarity=0.284 Sum_probs=109.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeCCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~~~ 192 (264)
..++|||+|||+.+++++|+++|++||+|..|+++.|+. .++|||||+|.+.++|.+||.|+|..+.|++|.|.++..
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~~~ 167 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSSQA 167 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeecch
Confidence 467899999999999999999999999999999998875 478999999999999999999999999999999987643
Q ss_pred CCCCCCCCCCCCChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeeccc
Q 024698 193 AILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIIL 251 (264)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d~ 251 (264)
....... ...... ...+...+|||+|||..+++++|+++|++| |.|.+|.|+.|.
T Consensus 168 ~~~~~~~-~~~~~~-~~~p~~~~l~v~nl~~~~te~~l~~~f~~~--G~i~~v~~~~d~ 222 (457)
T TIGR01622 168 EKNRAAK-AATHQP-GDIPNFLKLYVGNLHFNITEQELRQIFEPF--GDIEDVQLHRDP 222 (457)
T ss_pred hhhhhhh-cccccC-CCCCCCCEEEEcCCCCCCCHHHHHHHHHhc--CCeEEEEEEEcC
Confidence 2211000 000000 001236899999999999999999999999 999999999774
No 25
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.86 E-value=1.2e-20 Score=175.57 Aligned_cols=203 Identities=20% Similarity=0.294 Sum_probs=154.3
Q ss_pred CcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccCCC--c-
Q 024698 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGR--K- 100 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~g~--~- 100 (264)
-.+.+|++.....++|.++|..||+|..+.+| +.+ --++|+|..+. +|++|...+..-+ .
T Consensus 387 vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~G-----------~~aiv~fl~p~----eAr~Afrklaysr~k~~ 449 (725)
T KOG0110|consen 387 VILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PGG-----------TGAIVEFLNPL----EARKAFRKLAYSRFKSA 449 (725)
T ss_pred eeeeccCccccccHHHHHHhhcccccceeecC--ccc-----------ceeeeeecCcc----chHHHHHHhchhhhccC
Confidence 45889999999999999999999999999777 222 34899999999 7778877776500 0
Q ss_pred ----------CCC-----------Ccch-------h---------cccC------------CCCC-CEEEEcCCCCCCCH
Q 024698 101 ----------RLS-----------GRAF-------R---------AQRE------------DSVR-RTVYVSDIDQNITE 130 (264)
Q Consensus 101 ----------~~~-----------~~~~-------~---------~~~~------------~~~~-~~lfV~nLp~~~te 130 (264)
.+. .... . .+.. .... .+|||.||++++|.
T Consensus 450 plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~ 529 (725)
T KOG0110|consen 450 PLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTL 529 (725)
T ss_pred ccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccch
Confidence 000 0000 0 0000 0001 12999999999999
Q ss_pred HHHHHHhhcCCCeeEEEEecCCC-----CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCCCCCCCCCCCCCC
Q 024698 131 ERLAGLFSSCGQVVDCRVCGDPH-----SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPR 204 (264)
Q Consensus 131 ~~L~~~F~~~G~i~~v~i~~d~~-----~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~~~~~~~~~~~~~ 204 (264)
++|..+|...|.|.++.|...+. .+.|||||+|.++++|+.|+ .|+|+.++|+.|.|..+. ..+... ..
T Consensus 530 e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~-~k~~~~--~g-- 604 (725)
T KOG0110|consen 530 EDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE-NKPAST--VG-- 604 (725)
T ss_pred hHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc-Cccccc--cc--
Confidence 99999999999999998875543 26699999999999999999 799999999999999875 111110 11
Q ss_pred ChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeecc
Q 024698 205 SEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMII 250 (264)
Q Consensus 205 ~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d 250 (264)
.........+.|.|+|||+..+..+++.+|..| |.|.+|+||..
T Consensus 605 K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aF--GqlksvRlPKK 648 (725)
T KOG0110|consen 605 KKKSKKKKGTKILVRNIPFEATKREVRKLFTAF--GQLKSVRLPKK 648 (725)
T ss_pred cccccccccceeeeeccchHHHHHHHHHHHhcc--cceeeeccchh
Confidence 111112246899999999999999999999999 99999999987
No 26
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=7.6e-21 Score=168.78 Aligned_cols=155 Identities=23% Similarity=0.292 Sum_probs=127.7
Q ss_pred CCcccccccchhcHHHHHHHhhccCC-ccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccCCCcC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNP-LAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKR 101 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~-i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~g~~~ 101 (264)
.-++.-|++..-+++|+.+.+++.++ |++|.+..+... +.| |+|||||+|.++. .|..+++.+-.|+-+
T Consensus 165 ~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~d-k~K-----NRGFaFveYe~H~----~Aa~aRrKl~~g~~k 234 (506)
T KOG0117|consen 165 CRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDD-KTK-----NRGFAFVEYESHR----AAAMARRKLMPGKIK 234 (506)
T ss_pred ceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccc-ccc-----ccceEEEEeecch----hHHHHHhhccCCcee
Confidence 35688999999999999999999997 777777776654 433 4499999999999 888888888776664
Q ss_pred CCCc---chhcccCCC-------CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHH
Q 024698 102 LSGR---AFRAQREDS-------VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARA 171 (264)
Q Consensus 102 ~~~~---~~~~~~~~~-------~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~ 171 (264)
+.+. .+|++.... .-+-|||+||+.++|++.|+++|++||.|..|+.++| ||||+|.+.++|.+
T Consensus 235 lwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD------YaFVHf~eR~davk 308 (506)
T KOG0117|consen 235 LWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD------YAFVHFAEREDAVK 308 (506)
T ss_pred ecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc------eeEEeecchHHHHH
Confidence 4432 344433221 2245999999999999999999999999999988655 99999999999999
Q ss_pred HH-HhCCceeCCeeEEEeeCCCC
Q 024698 172 AL-NLGGTMLGYYPVRVLPSKTA 193 (264)
Q Consensus 172 Al-~ln~~~~~g~~i~V~~~~~~ 193 (264)
|| .+||+.+.|..|.|..+++.
T Consensus 309 Am~~~ngkeldG~~iEvtLAKP~ 331 (506)
T KOG0117|consen 309 AMKETNGKELDGSPIEVTLAKPV 331 (506)
T ss_pred HHHHhcCceecCceEEEEecCCh
Confidence 99 89999999999999998754
No 27
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=2.4e-20 Score=169.10 Aligned_cols=154 Identities=20% Similarity=0.262 Sum_probs=123.7
Q ss_pred cccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC----CCc
Q 024698 25 LETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ----GRK 100 (264)
Q Consensus 25 ~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~----g~~ 100 (264)
+-..||++.+...+|+.+|++||.|.+|.||+...+ +-. |||||.|.... +|..|+..||+ |+.
T Consensus 120 LIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dg-klc-------GFaFV~fk~~~----dA~~Al~~~N~~~i~gR~ 187 (678)
T KOG0127|consen 120 LIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDG-KLC-------GFAFVQFKEKK----DAEKALEFFNGNKIDGRP 187 (678)
T ss_pred EEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCC-Ccc-------ceEEEEEeeHH----HHHHHHHhccCceecCce
Confidence 456899999999999999999999999999977766 666 99999999999 88899999988 111
Q ss_pred ----------CC----------------------------------------------CCcc----------------hh
Q 024698 101 ----------RL----------------------------------------------SGRA----------------FR 108 (264)
Q Consensus 101 ----------~~----------------------------------------------~~~~----------------~~ 108 (264)
.. .... ..
T Consensus 188 VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd 267 (678)
T KOG0127|consen 188 VAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDD 267 (678)
T ss_pred eEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhcccccccccccccc
Confidence 00 0000 00
Q ss_pred cc----c-------------CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHH
Q 024698 109 AQ----R-------------EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGA 169 (264)
Q Consensus 109 ~~----~-------------~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a 169 (264)
.+ . .....++|||.|||+++|+++|.++|++||+|..+.|+.++. .++|.|||.|.+...|
T Consensus 268 ~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~ 347 (678)
T KOG0127|consen 268 EESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAA 347 (678)
T ss_pred ccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHH
Confidence 00 0 000125799999999999999999999999999999998887 4899999999999999
Q ss_pred HHHHHh------CC-ceeCCeeEEEeeC
Q 024698 170 RAALNL------GG-TMLGYYPVRVLPS 190 (264)
Q Consensus 170 ~~Al~l------n~-~~~~g~~i~V~~~ 190 (264)
.+||.. .| ..+.||.|+|..+
T Consensus 348 ~~ci~~Aspa~e~g~~ll~GR~Lkv~~A 375 (678)
T KOG0127|consen 348 QNCIEAASPASEDGSVLLDGRLLKVTLA 375 (678)
T ss_pred HHHHHhcCccCCCceEEEeccEEeeeec
Confidence 999942 34 6789999999875
No 28
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.83 E-value=1.3e-20 Score=159.27 Aligned_cols=144 Identities=19% Similarity=0.230 Sum_probs=124.3
Q ss_pred CcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccCCCc-CC
Q 024698 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRK-RL 102 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~g~~-~~ 102 (264)
.++..||+-+.++.+|+.+|++||.|++|.|++ .||||..++.. +|..+++++++-+. .+
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK---------------NYgFVHiEdkt----aaedairNLhgYtLhg~ 64 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVK---------------NYGFVHIEDKT----AAEDAIRNLHGYTLHGV 64 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeec---------------ccceEEeeccc----ccHHHHhhcccceecce
Confidence 467889999999999999999999999999985 68999999998 88899999988332 23
Q ss_pred CCcchhcccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeC
Q 024698 103 SGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLG 181 (264)
Q Consensus 103 ~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~ 181 (264)
......++.....+.+|+||||.+.++.+||+..|++||+|..|.|++| |+||+|+-.++|..|+ .||+.+|.
T Consensus 65 nInVeaSksKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd------y~fvh~d~~eda~~air~l~~~~~~ 138 (346)
T KOG0109|consen 65 NINVEASKSKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD------YAFVHFDRAEDAVEAIRGLDNTEFQ 138 (346)
T ss_pred EEEEEeccccCCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc------eeEEEEeeccchHHHHhcccccccc
Confidence 3333444444556788999999999999999999999999999999654 9999999999999999 79999999
Q ss_pred CeeEEEeeCCC
Q 024698 182 YYPVRVLPSKT 192 (264)
Q Consensus 182 g~~i~V~~~~~ 192 (264)
|++++|+.+..
T Consensus 139 gk~m~vq~sts 149 (346)
T KOG0109|consen 139 GKRMHVQLSTS 149 (346)
T ss_pred cceeeeeeecc
Confidence 99999998753
No 29
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.83 E-value=1e-19 Score=172.21 Aligned_cols=157 Identities=12% Similarity=0.096 Sum_probs=125.1
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC----C
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ----G 98 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~----g 98 (264)
..+++.||++.+|+++|+++|++||+|..+.++.+..+|+++ |||||+|.+.+ .|..|+..+++ |
T Consensus 296 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~-------g~afv~f~~~~----~a~~A~~~l~g~~~~~ 364 (509)
T TIGR01642 296 DRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSK-------GYAFCEYKDPS----VTDVAIAALNGKDTGD 364 (509)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcC-------eEEEEEECCHH----HHHHHHHHcCCCEECC
Confidence 468999999999999999999999999999999998888899 99999999999 88888888877 2
Q ss_pred Cc-CC--C--Cc----chhc------------------ccCCCCCCEEEEcCCCCC----------CCHHHHHHHhhcCC
Q 024698 99 RK-RL--S--GR----AFRA------------------QREDSVRRTVYVSDIDQN----------ITEERLAGLFSSCG 141 (264)
Q Consensus 99 ~~-~~--~--~~----~~~~------------------~~~~~~~~~lfV~nLp~~----------~te~~L~~~F~~~G 141 (264)
+. .+ . .. .... +......+.|+|.|+... ...++|+++|++||
T Consensus 365 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G 444 (509)
T TIGR01642 365 NKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYG 444 (509)
T ss_pred eEEEEEECccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcC
Confidence 21 00 0 00 0000 001123567999999632 12367899999999
Q ss_pred CeeEEEEecCCC-----CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeC
Q 024698 142 QVVDCRVCGDPH-----SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 142 ~i~~v~i~~d~~-----~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~ 190 (264)
.|..|.|+++.. ...|++||+|.+.++|.+|+ .|||..|.|+.|.|.+.
T Consensus 445 ~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~ 499 (509)
T TIGR01642 445 PLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFY 499 (509)
T ss_pred CeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 999999987532 24689999999999999999 89999999999999974
No 30
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=8e-20 Score=152.46 Aligned_cols=157 Identities=18% Similarity=0.200 Sum_probs=132.5
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccCCCc--
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRK-- 100 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~g~~-- 100 (264)
.|+.+..|+..||++||+.+|++||.|..-|+..|..+|.+| |.+||.|.... +|.+|+..+||-+.
T Consensus 128 aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~sr-------GVgFiRFDKr~----EAe~AIk~lNG~~P~g 196 (360)
T KOG0145|consen 128 ANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSR-------GVGFIRFDKRI----EAEEAIKGLNGQKPSG 196 (360)
T ss_pred cceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceec-------ceeEEEecchh----HHHHHHHhccCCCCCC
Confidence 478889999999999999999999999999999999999999 99999999999 88899999998211
Q ss_pred -------------------------------CCCCcchhcc-----------------------------------cCCC
Q 024698 101 -------------------------------RLSGRAFRAQ-----------------------------------REDS 114 (264)
Q Consensus 101 -------------------------------~~~~~~~~~~-----------------------------------~~~~ 114 (264)
+..++..... ..+.
T Consensus 197 ~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~ 276 (360)
T KOG0145|consen 197 CTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPG 276 (360)
T ss_pred CCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCC
Confidence 1111000000 0001
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~ 190 (264)
....|||-||.++.+|.-|+++|++||.|..|++++|..+ .||||||++.+.++|..|| .|||..+.+|.|.|...
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 1235999999999999999999999999999999999874 7799999999999999999 89999999999999864
No 31
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=5.3e-20 Score=159.89 Aligned_cols=155 Identities=16% Similarity=0.256 Sum_probs=133.2
Q ss_pred ccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC----CCc-
Q 024698 26 ETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ----GRK- 100 (264)
Q Consensus 26 ~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~----g~~- 100 (264)
++.-+.|++.|+.||..|..||+|.+|.+.+|+-|++++ ||+||+|+-+| .|+-|...+|+ |+.
T Consensus 117 YVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHK-------gFAFVEYEvPE----aAqLAlEqMNg~mlGGRNi 185 (544)
T KOG0124|consen 117 YVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHK-------GFAFVEYEVPE----AAQLALEQMNGQMLGGRNI 185 (544)
T ss_pred eeeeeEEEechHHHHhhccCCCCcceeeccccccccccc-------ceEEEEEeCcH----HHHHHHHHhccccccCccc
Confidence 455688999999999999999999999999999999999 99999999999 88888888887 433
Q ss_pred CCCCcchhcc---------cCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHH
Q 024698 101 RLSGRAFRAQ---------REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGA 169 (264)
Q Consensus 101 ~~~~~~~~~~---------~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a 169 (264)
++..+....+ .+...-..|||..+.++.+++||+..|+-||+|..|.+.+++. +.+||||++|.+..+.
T Consensus 186 KVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~ 265 (544)
T KOG0124|consen 186 KVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQ 265 (544)
T ss_pred cccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccch
Confidence 3333332222 2222345699999999999999999999999999999999887 4889999999999999
Q ss_pred HHHH-HhCCceeCCeeEEEeeCC
Q 024698 170 RAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 170 ~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
..|+ .||-..++|..|+|..+-
T Consensus 266 ~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 266 SEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred HHHhhhcchhhcccceEeccccc
Confidence 9999 899999999999998753
No 32
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.80 E-value=1.2e-19 Score=153.46 Aligned_cols=117 Identities=25% Similarity=0.413 Sum_probs=107.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCCCCC
Q 024698 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAIL 195 (264)
Q Consensus 117 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~~~~ 195 (264)
.+|||||||..+++.+|+.+|++||+|.+|.|+++ ||||+.++...+.-|| .|++..++|..|.|..++..
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK-- 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK-- 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc------cceEEeecccccHHHHhhcccceecceEEEEEecccc--
Confidence 35999999999999999999999999999999765 9999999999999999 69999999999999986532
Q ss_pred CCCCCCCCCChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeeccccceeeE
Q 024698 196 PVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIILFYFHLF 257 (264)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d~~~~~~~ 257 (264)
.....+|+|+||.++++.+||+..|++| |+|..+.|.+|++++||-
T Consensus 75 --------------sk~stkl~vgNis~tctn~ElRa~fe~y--gpviecdivkdy~fvh~d 120 (346)
T KOG0109|consen 75 --------------SKASTKLHVGNISPTCTNQELRAKFEKY--GPVIECDIVKDYAFVHFD 120 (346)
T ss_pred --------------CCCccccccCCCCccccCHHHhhhhccc--CCceeeeeecceeEEEEe
Confidence 1146789999999999999999999999 999999999999999984
No 33
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.78 E-value=7.5e-19 Score=154.15 Aligned_cols=156 Identities=16% Similarity=0.128 Sum_probs=126.0
Q ss_pred CcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC---CCc
Q 024698 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ---GRK 100 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~---g~~ 100 (264)
...+-.|.++.|++.|++.|++||+|.+|.+++++.++++| ||+||+|.+++... +++..... |+.
T Consensus 8 KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsr-------gFgfv~f~~~~~v~----~vl~~~~h~~dgr~ 76 (311)
T KOG4205|consen 8 KLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSR-------GFGFVTFATPEGVD----AVLNARTHKLDGRS 76 (311)
T ss_pred ceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcc-------cccceecCCCcchh----eeecccccccCCcc
Confidence 46777899999999999999999999999999999999999 99999999999444 33333222 222
Q ss_pred CCCCcc----hhcccC--CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHH
Q 024698 101 RLSGRA----FRAQRE--DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAA 172 (264)
Q Consensus 101 ~~~~~~----~~~~~~--~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~~g~afV~f~~~e~a~~A 172 (264)
+.... ...+.. ....++|||++||.+++++++++.|.+||.|..+.++.|..+ ++||+||+|.+++++.++
T Consensus 77 -ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv 155 (311)
T KOG4205|consen 77 -VEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKV 155 (311)
T ss_pred -ccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEecccccccee
Confidence 11111 111111 112457999999999999999999999999999999988874 789999999999999999
Q ss_pred HHhCCceeCCeeEEEeeCC
Q 024698 173 LNLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 173 l~ln~~~~~g~~i~V~~~~ 191 (264)
+...-+.|.|+.+.|..+-
T Consensus 156 ~~~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 156 TLQKFHDFNGKKVEVKRAI 174 (311)
T ss_pred cccceeeecCceeeEeecc
Confidence 9888899999999998753
No 34
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=2.8e-18 Score=151.99 Aligned_cols=125 Identities=22% Similarity=0.306 Sum_probs=105.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHH-HhCC-ceeCC--eeEE
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAAL-NLGG-TMLGY--YPVR 186 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~~g~afV~f~~~e~a~~Al-~ln~-~~~~g--~~i~ 186 (264)
+...-++|||.+|..++|.||+.+|++||.|.+|.|++|+.+ ++|||||.|.+.++|.+|+ .|+. +++.| .+|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 334567999999999999999999999999999999999974 8999999999999999999 5554 44544 6788
Q ss_pred EeeCCCCCCCCCCCCCCCChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeecccc
Q 024698 187 VLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIILF 252 (264)
Q Consensus 187 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d~~ 252 (264)
|.++..+ +++....+.|||+-|+..++|.|++++|++| |.|+++.|.+|-.
T Consensus 111 vk~Ad~E-------------~er~~~e~KLFvg~lsK~~te~evr~iFs~f--G~Ied~~ilrd~~ 161 (510)
T KOG0144|consen 111 VKYADGE-------------RERIVEERKLFVGMLSKQCTENEVREIFSRF--GHIEDCYILRDPD 161 (510)
T ss_pred ecccchh-------------hhccccchhhhhhhccccccHHHHHHHHHhh--Cccchhhheeccc
Confidence 8875422 1222347889999999999999999999999 9999999999753
No 35
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.74 E-value=6.6e-18 Score=134.26 Aligned_cols=121 Identities=26% Similarity=0.320 Sum_probs=103.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
...|||||||+..++++.|.++|-+.|+|..+++++|+.+ .+||||++|.++|+|+-|+ -||+..+-||+|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 4578999999999999999999999999999999999874 7899999999999999999 699999999999999854
Q ss_pred CCCCCCCCCCCCCChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEE-Eeecc
Q 024698 192 TAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTL-PCMII 250 (264)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v-~l~~d 250 (264)
... ..-....++||+||++.++|..|.+.|+.| |.+.+. ++++|
T Consensus 88 ~~~-------------~nl~vganlfvgNLd~~vDe~~L~dtFsaf--G~l~~~P~i~rd 132 (203)
T KOG0131|consen 88 AHQ-------------KNLDVGANLFVGNLDPEVDEKLLYDTFSAF--GVLISPPKIMRD 132 (203)
T ss_pred ccc-------------ccccccccccccccCcchhHHHHHHHHHhc--cccccCCccccc
Confidence 110 011145789999999999999999999999 888752 44444
No 36
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.73 E-value=6.6e-18 Score=157.55 Aligned_cols=160 Identities=19% Similarity=0.219 Sum_probs=128.5
Q ss_pred cccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC----CCc
Q 024698 25 LETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ----GRK 100 (264)
Q Consensus 25 ~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~----g~~ 100 (264)
++++|++++.|.++|+.+|++.|.|.++.|+.-+...+ ....-|||||+|.+.+ +|+.|+..++| |..
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~----k~lSmGfgFVEF~~~e----~A~~a~k~lqgtvldGH~ 589 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPAN----KYLSMGFGFVEFAKPE----SAQAALKALQGTVLDGHK 589 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccc----cccccceeEEEecCHH----HHHHHHHHhcCceecCce
Confidence 78999999999999999999999999998887665411 1223399999999999 88888888886 222
Q ss_pred ---CCCC--cchh--cccC-CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHH
Q 024698 101 ---RLSG--RAFR--AQRE-DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGAR 170 (264)
Q Consensus 101 ---~~~~--~~~~--~~~~-~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~ 170 (264)
+++. +... .+.. ......|+|.|||+..+..+++++|..||.+.+|+|+.... ..+|||||+|-++.+|.
T Consensus 590 l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~ 669 (725)
T KOG0110|consen 590 LELKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAK 669 (725)
T ss_pred EEEEeccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHH
Confidence 2221 0000 1111 11235799999999999999999999999999999987633 47899999999999999
Q ss_pred HHH-HhCCceeCCeeEEEeeCCC
Q 024698 171 AAL-NLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 171 ~Al-~ln~~~~~g~~i~V~~~~~ 192 (264)
+|+ .|..+.+-||.|.+.|++.
T Consensus 670 nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 670 NAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred HHHHhhcccceechhhheehhcc
Confidence 999 8999999999999999764
No 37
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=7.6e-17 Score=128.52 Aligned_cols=142 Identities=18% Similarity=0.225 Sum_probs=111.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTA 193 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~~ 193 (264)
..++|||+|||.++.+.+|+++|.+||.|..|.|..-+. +.+||||+|+++.+|+-|| --+|..+.|+.|+|..+...
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g-~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG-PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC-CCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 467899999999999999999999999999999843333 5579999999999999999 79999999999999987644
Q ss_pred CCCC--CCCCCCCCh----------hhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeeccccceeeEEE
Q 024698 194 ILPV--NPTFLPRSE----------DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIILFYFHLFIY 259 (264)
Q Consensus 194 ~~~~--~~~~~~~~~----------~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d~~~~~~~~~ 259 (264)
.... ...+..... .........|.|.+||++-+|+||++.+.+. |+|+...+.+|--++.-|+.
T Consensus 84 r~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmRea--GdvCfadv~rDg~GvV~~~r 159 (241)
T KOG0105|consen 84 RSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREA--GDVCFADVQRDGVGVVEYLR 159 (241)
T ss_pred CcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhh--CCeeeeeeecccceeeeeee
Confidence 3110 000110000 0112256789999999999999999999999 89999999999655444443
No 38
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=2.7e-17 Score=143.09 Aligned_cols=124 Identities=25% Similarity=0.409 Sum_probs=108.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCCC
Q 024698 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTA 193 (264)
Q Consensus 117 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~~ 193 (264)
..+|||.+.+.+.|+.|+..|..||+|+++.+..|+- +.+|||||+|+-+|.|+-|+ .|||..++||.|+|..+.
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPs-- 191 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS-- 191 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCC--
Confidence 4599999999999999999999999999999999987 47899999999999999999 899999999999999643
Q ss_pred CCCCCCCCCCCChh------hhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeeccc
Q 024698 194 ILPVNPTFLPRSED------EREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIIL 251 (264)
Q Consensus 194 ~~~~~~~~~~~~~~------~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d~ 251 (264)
-.|+.+. +.....++|||..+.++++|+||+.+|+.| |+|.++.|.++.
T Consensus 192 -------NmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAF--G~I~~C~LAr~p 246 (544)
T KOG0124|consen 192 -------NMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAF--GEIVKCQLARAP 246 (544)
T ss_pred -------CCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhh--cceeeEEeeccC
Confidence 2222221 113367899999999999999999999999 999999999863
No 39
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.70 E-value=1.7e-16 Score=125.78 Aligned_cols=78 Identities=28% Similarity=0.477 Sum_probs=72.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
..++|||+|||+++|+++|+++|++||+|.+++++.|+. .++|||||+|.+.++|++|+ .||+..+.|++|+|.++.
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~ 112 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPAN 112 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCC
Confidence 467899999999999999999999999999999999876 47899999999999999999 799999999999999975
Q ss_pred C
Q 024698 192 T 192 (264)
Q Consensus 192 ~ 192 (264)
.
T Consensus 113 ~ 113 (144)
T PLN03134 113 D 113 (144)
T ss_pred c
Confidence 4
No 40
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.69 E-value=4.6e-17 Score=148.26 Aligned_cols=148 Identities=19% Similarity=0.235 Sum_probs=116.9
Q ss_pred ccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC----CCcCCC--
Q 024698 30 SESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ----GRKRLS-- 103 (264)
Q Consensus 30 ~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~----g~~~~~-- 103 (264)
+.-..+..+|.++|+.+|.|.+|+++.|...++++ |.|||+|.+.+.+. .++ .+.| |..-+-
T Consensus 187 la~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rsk-------gi~Yvef~D~~sVp----~ai-aLsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 187 LARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSK-------GIAYVEFCDEQSVP----LAI-ALSGQRLLGVPVIVQL 254 (549)
T ss_pred HhhcCCchhHHHHHHhhcCcceeEeeccccchhhc-------ceeEEEEecccchh----hHh-hhcCCcccCceeEecc
Confidence 44566899999999999999999999999999999 99999999988444 333 2222 222000
Q ss_pred ---------Ccchhccc-C-CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHH
Q 024698 104 ---------GRAFRAQR-E-DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGAR 170 (264)
Q Consensus 104 ---------~~~~~~~~-~-~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~ 170 (264)
....+.+. . ...-..||||||.+++|++.|+.+|+.||.|..|.+..|.. .++|||||+|.+.+.|.
T Consensus 255 sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar 334 (549)
T KOG0147|consen 255 SEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDAR 334 (549)
T ss_pred cHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHH
Confidence 00111110 0 00112299999999999999999999999999999999964 48999999999999999
Q ss_pred HHH-HhCCceeCCeeEEEee
Q 024698 171 AAL-NLGGTMLGYYPVRVLP 189 (264)
Q Consensus 171 ~Al-~ln~~~~~g~~i~V~~ 189 (264)
+|+ +|||..+-|+.|+|..
T Consensus 335 ~a~e~lngfelAGr~ikV~~ 354 (549)
T KOG0147|consen 335 KALEQLNGFELAGRLIKVSV 354 (549)
T ss_pred HHHHHhccceecCceEEEEE
Confidence 999 8999999999999976
No 41
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.64 E-value=1.5e-15 Score=104.79 Aligned_cols=68 Identities=32% Similarity=0.560 Sum_probs=63.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEE
Q 024698 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP-HSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVR 186 (264)
Q Consensus 119 lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~-~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~ 186 (264)
|||+|||+++|+++|+++|++||.|..+.+..+. ..++|+|||+|.+.++|.+|+ .+||..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999863 357899999999999999999 6999999999986
No 42
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.62 E-value=3.7e-15 Score=126.83 Aligned_cols=76 Identities=29% Similarity=0.425 Sum_probs=71.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeCCC
Q 024698 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 116 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~~~ 192 (264)
.++|||+|||+.+|+++|+++|+.||+|.+|+|+.|+. ++|||||+|.++++|..|+.|||..+.|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~-~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE-RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 57899999999999999999999999999999998875 57999999999999999999999999999999999754
No 43
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.59 E-value=4.7e-15 Score=130.30 Aligned_cols=129 Identities=24% Similarity=0.361 Sum_probs=107.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeCCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~~~ 192 (264)
...+|||++|++.+|++.|+++|++||+|.+|.+++|+.+ ++||+||+|.+++...+++....+.+.|+.|.+..+-+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 5678999999999999999999999999999999999884 77999999999999999997777889999988876421
Q ss_pred CCCCCCCCCCCCChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeeccccc
Q 024698 193 AILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIILFY 253 (264)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d~~~ 253 (264)
-... ...........|||++||+++++++++++|++| |.|..+.++.|...
T Consensus 85 r~~~--------~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~--g~v~~~~~~~d~~~ 135 (311)
T KOG4205|consen 85 REDQ--------TKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQF--GKVADVVIMYDKTT 135 (311)
T ss_pred cccc--------cccccccceeEEEecCcCCCCchHHHhhhhhcc--ceeEeeEEeecccc
Confidence 1100 000011146789999999999999999999999 89999999987543
No 44
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=9.5e-15 Score=122.68 Aligned_cols=76 Identities=22% Similarity=0.428 Sum_probs=70.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 116 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
...|||-.||.+..+.||...|-.||.|.+.++..|+.+ +|.||||.|+++.+++.|| .|||..|+.++|+|...+
T Consensus 285 GCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKR 363 (371)
T KOG0146|consen 285 GCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKR 363 (371)
T ss_pred cceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcC
Confidence 346999999999999999999999999999999988874 8899999999999999999 899999999999999754
No 45
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=1.5e-14 Score=124.60 Aligned_cols=77 Identities=22% Similarity=0.325 Sum_probs=73.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
..+.|+|+|||+...+.||+.+|++||+|.+|.|+.+...+||||||+|++.++|++|- +|||..+.||+|.|..+.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 45679999999999999999999999999999999998889999999999999999999 899999999999999864
No 46
>PLN03213 repressor of silencing 3; Provisional
Probab=99.55 E-value=5e-15 Score=133.46 Aligned_cols=129 Identities=18% Similarity=0.270 Sum_probs=92.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCH--HHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADE--HGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~--e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
...+||||||++.+|+++|+.+|+.||.|..|.|++.. .||||||+|.+. .++.+|| .|||..++|+.|+|..++
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRET--GRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTK--GRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeccc--CCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 45679999999999999999999999999999999554 499999999987 7899999 899999999999999875
Q ss_pred CCCCCCCCCCCCCChhhhcC----CCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeeccccceeeEE
Q 024698 192 TAILPVNPTFLPRSEDEREM----CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIILFYFHLFI 258 (264)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~----~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d~~~~~~~~ 258 (264)
+. |..|...++.. ...++-+.-.. .....|+-+|.+. +.|.++-+-.- +.|-|.
T Consensus 87 P~-------YLeRLkrEReea~s~~~~~~kl~k~~--~e~~qLnifFPrL--rKvKslPfsGT--GKHkYS 144 (759)
T PLN03213 87 EH-------YLARLKREWEAASSTSDNTIKAPSDS--PPATHLNIFFPRL--RKVKAMPLSGT--GKHKYS 144 (759)
T ss_pred HH-------HHHHHHHHHHHhhccccccccccccC--CccceeeEecccc--ccccccccCCC--ccceee
Confidence 43 44433322211 11222222211 2335677777777 67776555544 555543
No 47
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.54 E-value=1.4e-13 Score=118.10 Aligned_cols=133 Identities=27% Similarity=0.406 Sum_probs=106.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCC
Q 024698 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 116 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~ 192 (264)
..+|||+|||+.+|+++|+++|.+||.|..+.+..|+. .++|||||+|.+.++|..|+ .+++..+.|++|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58999999999999999999999999999999999873 58999999999999999999 8999999999999999542
Q ss_pred ---CCCCCCC----CCC---CCChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeecc
Q 024698 193 ---AILPVNP----TFL---PRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMII 250 (264)
Q Consensus 193 ---~~~~~~~----~~~---~~~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d 250 (264)
....... ... .............+++.+++..++..++...|..+ |.+..+.+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 260 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSR--GDIVRASLPPS 260 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhcccc--ccceeeeccCC
Confidence 1111100 000 01111123366789999999999999999999999 89977666654
No 48
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.53 E-value=8e-14 Score=96.54 Aligned_cols=68 Identities=37% Similarity=0.545 Sum_probs=61.1
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEE
Q 024698 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVR 186 (264)
Q Consensus 119 lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~ 186 (264)
|||+|||+++++++|+++|+.||.|..+++..++. .++|+|||+|.++++|.+|+ .+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999998765 46799999999999999999 6888999999875
No 49
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=2.8e-14 Score=107.51 Aligned_cols=76 Identities=33% Similarity=0.459 Sum_probs=71.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~ 190 (264)
.+.|||||||++.+||++|.++|+++|+|..|.+-.|+. ++-|||||+|.+.++|..|+ -+++..+..++|++.|-
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 578999999999999999999999999999998877776 58899999999999999999 59999999999999984
No 50
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.52 E-value=1.1e-13 Score=116.07 Aligned_cols=77 Identities=21% Similarity=0.259 Sum_probs=71.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeCCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~~~ 192 (264)
...+|||+||++.+|+++|+++|+.||+|.+|+|++|.. .+|||||+|.+++.+..|+.|||..|.+++|.|.++..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e-t~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE-YACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC-cceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCcc
Confidence 347899999999999999999999999999999999855 56899999999999999999999999999999998653
No 51
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.50 E-value=3.9e-13 Score=110.82 Aligned_cols=138 Identities=22% Similarity=0.352 Sum_probs=106.1
Q ss_pred CCEEEEcCCCCCCCHHHHHH----HhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeC
Q 024698 116 RRTVYVSDIDQNITEERLAG----LFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 116 ~~~lfV~nLp~~~te~~L~~----~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~ 190 (264)
..||||.||+..+..++|+. +|++||+|.+|....... .+|-|||.|.+.+.|..|+ .|+|..+-|+++++.++
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~K-mRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPK-MRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCC-ccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 34999999999999999998 999999999998865544 7899999999999999999 89999999999999997
Q ss_pred CCCCC---CCCCCCCCCCh---------------------------------hhhcCCCCeEEEcCCCCCCCHHHHHHHH
Q 024698 191 KTAIL---PVNPTFLPRSE---------------------------------DEREMCSRTVYCTNIDKKVPQAEVKQFF 234 (264)
Q Consensus 191 ~~~~~---~~~~~~~~~~~---------------------------------~~~~~~~~~i~v~nL~~~~te~~L~~~F 234 (264)
+.... ...+.+.++.. ....++...+++.|||..++.+.|..+|
T Consensus 88 ~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~lf 167 (221)
T KOG4206|consen 88 KSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSDLF 167 (221)
T ss_pred cCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHHHH
Confidence 64431 10101111100 1113356789999999999999999999
Q ss_pred hhcCCCceEEEEeec---cccceee
Q 024698 235 EAACGGEVRTLPCMI---ILFYFHL 256 (264)
Q Consensus 235 ~~~~gG~I~~v~l~~---d~~~~~~ 256 (264)
++| ..-..|+++. +.|++++
T Consensus 168 ~qf--~g~keir~i~~~~~iAfve~ 190 (221)
T KOG4206|consen 168 EQF--PGFKEIRLIPPRSGIAFVEF 190 (221)
T ss_pred hhC--cccceeEeccCCCceeEEec
Confidence 999 4556666654 5555544
No 52
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=3.1e-13 Score=107.99 Aligned_cols=142 Identities=16% Similarity=0.160 Sum_probs=108.0
Q ss_pred CcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccCCCcCCC
Q 024698 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKRLS 103 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~g~~~~~ 103 (264)
...+-||+.++.+.||+++|.|||.|.+|.++..... . .||||+|+++.||+ +|......|+-+..++.
T Consensus 8 ~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~---p-------pfafVeFEd~RDAe-DAiygRdGYdydg~rLR 76 (241)
T KOG0105|consen 8 RIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGP---P-------PFAFVEFEDPRDAE-DAIYGRDGYDYDGCRLR 76 (241)
T ss_pred eEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCC---C-------CeeEEEecCccchh-hhhhcccccccCcceEE
Confidence 6789999999999999999999999999998765532 2 89999999999776 66666665543111000
Q ss_pred -----------------------CcchhcccCCC---CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCce
Q 024698 104 -----------------------GRAFRAQREDS---VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR 157 (264)
Q Consensus 104 -----------------------~~~~~~~~~~~---~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g 157 (264)
+......+.+. ....+.|.+||++-++++|+++..+-|.|....+.+| |
T Consensus 77 VEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-----g 151 (241)
T KOG0105|consen 77 VEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-----G 151 (241)
T ss_pred EEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-----c
Confidence 00000001111 2235999999999999999999999999998888666 6
Q ss_pred EEEEEecCHHHHHHHH-HhCCceeC
Q 024698 158 FAFVEFADEHGARAAL-NLGGTMLG 181 (264)
Q Consensus 158 ~afV~f~~~e~a~~Al-~ln~~~~~ 181 (264)
.+.|+|...|+..-|+ +|+.+.+.
T Consensus 152 ~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 152 VGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred ceeeeeeehhhHHHHHHhhcccccc
Confidence 8999999999999999 78877764
No 53
>smart00362 RRM_2 RNA recognition motif.
Probab=99.48 E-value=4.2e-13 Score=91.79 Aligned_cols=71 Identities=39% Similarity=0.612 Sum_probs=66.0
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEe
Q 024698 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVL 188 (264)
Q Consensus 118 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~ 188 (264)
+|||+|||..+++++|+++|++||+|..+.+..++..++|+|||+|.+.+.|..|+ .+++..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999998877567899999999999999999 799999999999874
No 54
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.47 E-value=3.5e-12 Score=112.88 Aligned_cols=201 Identities=20% Similarity=0.240 Sum_probs=141.8
Q ss_pred ccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCce-EEeccCCcccccchHHHHHhhccC-----CC
Q 024698 26 ETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNF-ADDNKQSAIDNFNNNRRRRNNFNQ-----GR 99 (264)
Q Consensus 26 ~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf-~fV~f~~~~~a~~~A~~a~~~~~~-----g~ 99 (264)
-+.|.-|.+|-+-|..+|++||.|..|.--... . || |.|+|.+.+ .|..|...++| |.
T Consensus 154 iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Kn-----n-------~FQALvQy~d~~----sAq~AK~aLdGqnIyngc 217 (492)
T KOG1190|consen 154 IIENMFYPVSLDVLHQVFSKFGFVLKIITFTKN-----N-------GFQALVQYTDAV----SAQAAKLALDGQNIYNGC 217 (492)
T ss_pred EeccceeeeEHHHHHHHHhhcceeEEEEEEecc-----c-------chhhhhhccchh----hHHHHHHhccCCcccCce
Confidence 467788999999999999999999876532211 1 44 889999999 66677666665 11
Q ss_pred c---------------------C-CCC---cch------------------------------------hcccCCCC--C
Q 024698 100 K---------------------R-LSG---RAF------------------------------------RAQREDSV--R 116 (264)
Q Consensus 100 ~---------------------~-~~~---~~~------------------------------------~~~~~~~~--~ 116 (264)
+ | ... +.. ...+.+.. .
T Consensus 218 CtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n 297 (492)
T KOG1190|consen 218 CTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSAN 297 (492)
T ss_pred eEEEeehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCc
Confidence 1 0 000 000 00000111 2
Q ss_pred CEEEEcCCC-CCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCCCC
Q 024698 117 RTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAI 194 (264)
Q Consensus 117 ~~lfV~nLp-~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~~~ 194 (264)
..|-|.||. ..+|.+.|-.+|+-||+|..|+|+.++. --|.|+|.+...|+-|+ .|+|..+.|++|+|..++..-
T Consensus 298 ~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk---d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 298 VVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK---DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred eEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC---cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 457888888 6799999999999999999999988765 47999999999999999 899999999999999997653
Q ss_pred CCCCC----------CCCC----CChhh-------hcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEE
Q 024698 195 LPVNP----------TFLP----RSEDE-------REMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLP 246 (264)
Q Consensus 195 ~~~~~----------~~~~----~~~~~-------~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~ 246 (264)
..... .|.+ |-.+. .-++..++.+.|+|++++|++|+..|..- ||.|..-+
T Consensus 375 vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~-g~~vkafk 446 (492)
T KOG1190|consen 375 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEP-GGQVKAFK 446 (492)
T ss_pred ccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcC-CceEEeee
Confidence 21100 0111 11100 01355689999999999999999999997 43444333
No 55
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=2.1e-13 Score=112.86 Aligned_cols=78 Identities=18% Similarity=0.267 Sum_probs=70.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeCCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~~~ 192 (264)
.-.+||||+|++.++.+.|+++|++||+|.+..++.|+.+ +||||||+|++.++|.+|++--.-.|+||+-.|..+.-
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANCNLASL 90 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccccchhhh
Confidence 3456999999999999999999999999999999999874 88999999999999999996555779999999988654
No 56
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=3.2e-13 Score=112.20 Aligned_cols=78 Identities=28% Similarity=0.402 Sum_probs=73.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
+..+|-|.|||.++++++|+++|.+||.|..|.|.+|+.+ ++|||||+|.+.++|.+|| .|||.-+.+--|+|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 4567999999999999999999999999999999999985 8999999999999999999 899999999999999987
Q ss_pred C
Q 024698 192 T 192 (264)
Q Consensus 192 ~ 192 (264)
+
T Consensus 268 P 268 (270)
T KOG0122|consen 268 P 268 (270)
T ss_pred C
Confidence 4
No 57
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=2.7e-13 Score=107.50 Aligned_cols=75 Identities=31% Similarity=0.386 Sum_probs=69.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~ 192 (264)
..++||||||+..+++.||+..|..||++..|.|..+ +.|||||+|+++.+|..|+ .|||..|.|..|+|..+..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn---PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G 84 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN---PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTG 84 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec---CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecC
Confidence 4678999999999999999999999999999999764 5599999999999999999 7999999999999998753
No 58
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=7.7e-13 Score=96.17 Aligned_cols=77 Identities=26% Similarity=0.358 Sum_probs=70.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeC
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~ 190 (264)
+...+-|||.|||+++|.++..++|++||.|.+|+|-..+. .+|-|||.|++..+|.+|+ +|+|..+.++.+.|...
T Consensus 15 pevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~-TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE-TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC-cCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 34567799999999999999999999999999999966655 5799999999999999999 89999999999999974
No 59
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.41 E-value=6.3e-12 Score=103.73 Aligned_cols=150 Identities=15% Similarity=0.154 Sum_probs=116.1
Q ss_pred CcccccccchhcHHHHHH----HhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC--
Q 024698 24 NLETKKSESEFTVQKLVD----MFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ-- 97 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~----~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~-- 97 (264)
++...|++-.+..++|+. +|++||.|.+|..-+. .+.| |=|||.|.+.+ .|..|...++|
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt---~KmR-------GQA~VvFk~~~----~As~A~r~l~gfp 76 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT---PKMR-------GQAFVVFKETE----AASAALRALQGFP 76 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC---CCcc-------CceEEEecChh----HHHHHHHHhcCCc
Confidence 899999999999999999 9999999999987643 4778 99999999999 66677777776
Q ss_pred --CCc-C----------CCC--------------cc-----hhc-------------------ccCCCCCCEEEEcCCCC
Q 024698 98 --GRK-R----------LSG--------------RA-----FRA-------------------QREDSVRRTVYVSDIDQ 126 (264)
Q Consensus 98 --g~~-~----------~~~--------------~~-----~~~-------------------~~~~~~~~~lfV~nLp~ 126 (264)
|+. + +.. .. ... .........+|+.|||.
T Consensus 77 FygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~ 156 (221)
T KOG4206|consen 77 FYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPS 156 (221)
T ss_pred ccCchhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCc
Confidence 222 0 000 00 000 00011345699999999
Q ss_pred CCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeC-CeeEEEeeC
Q 024698 127 NITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLG-YYPVRVLPS 190 (264)
Q Consensus 127 ~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~-g~~i~V~~~ 190 (264)
.++.+.|..+|.+|.-...++++.... +.|||+|.+...+..|. .+.+..+. ...++|..+
T Consensus 157 es~~e~l~~lf~qf~g~keir~i~~~~---~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 157 ESESEMLSDLFEQFPGFKEIRLIPPRS---GIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred chhHHHHHHHHhhCcccceeEeccCCC---ceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 999999999999999999999876543 79999999999999999 78887775 777777754
No 60
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=5.8e-14 Score=111.82 Aligned_cols=76 Identities=25% Similarity=0.388 Sum_probs=71.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~ 190 (264)
.+.-|||||||+..||.+|.-+|++||+|..|.+++|+.+ ++||||+.|++..+..-|+ .|||..+.||.|+|.+.
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 4556999999999999999999999999999999999985 8899999999999999999 89999999999999974
No 61
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.39 E-value=3.6e-11 Score=107.39 Aligned_cols=153 Identities=19% Similarity=0.212 Sum_probs=118.2
Q ss_pred CcccccccchhcHHHHHHHhh-ccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC----C
Q 024698 24 NLETKKSESEFTVQKLVDMFT-KLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ----G 98 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~-~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~----g 98 (264)
+.+.-|++|++.+++|++||. +.|+|+.|.+..|..+ |.| |+|-|+|+++| .+++|...+|. |
T Consensus 46 ~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~G-K~r-------GcavVEFk~~E----~~qKa~E~lnk~~~~G 113 (608)
T KOG4212|consen 46 SVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESG-KAR-------GCAVVEFKDPE----NVQKALEKLNKYEVNG 113 (608)
T ss_pred eEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCC-CcC-------CceEEEeeCHH----HHHHHHHHhhhccccC
Confidence 468889999999999999996 5689999999999886 999 99999999999 66666666544 0
Q ss_pred Cc----------------------------------------------------------CCCCcc---hhc--------
Q 024698 99 RK----------------------------------------------------------RLSGRA---FRA-------- 109 (264)
Q Consensus 99 ~~----------------------------------------------------------~~~~~~---~~~-------- 109 (264)
+. +.+++. ..+
T Consensus 114 R~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~ 193 (608)
T KOG4212|consen 114 RELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSN 193 (608)
T ss_pred ceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchh
Confidence 00 000000 000
Q ss_pred -------------cc--CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHH
Q 024698 110 -------------QR--EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAAL 173 (264)
Q Consensus 110 -------------~~--~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al 173 (264)
.. .+....++||.||.+.+..+.|++.|.-.|.|..+.+-.|+. .++|||.++|..+-+|..||
T Consensus 194 ~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaI 273 (608)
T KOG4212|consen 194 YNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAI 273 (608)
T ss_pred hhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHH
Confidence 00 111233599999999999999999999999999999988887 58899999999999999999
Q ss_pred -HhCCceeCCeeEEEe
Q 024698 174 -NLGGTMLGYYPVRVL 188 (264)
Q Consensus 174 -~ln~~~~~g~~i~V~ 188 (264)
.+++.-+..++..+.
T Consensus 274 sml~~~g~~~~~~~~R 289 (608)
T KOG4212|consen 274 SMLDRQGLFDRRMTVR 289 (608)
T ss_pred HhhccCCCccccceee
Confidence 788766666555544
No 62
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.37 E-value=4.5e-12 Score=114.68 Aligned_cols=154 Identities=18% Similarity=0.133 Sum_probs=111.9
Q ss_pred ccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccCCCc----C
Q 024698 26 ETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRK----R 101 (264)
Q Consensus 26 ~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~g~~----~ 101 (264)
..+-|++.+|++||+++|+.++ |.++.+++. +|+.. |=|||+|.+.+|+. .|++.-+...+.+- .
T Consensus 14 r~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~s-------GeA~Ve~~seedv~-~AlkkdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 14 RLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPS-------GEAYVEFTSEEDVE-KALKKDRESMGHRYIEVFT 82 (510)
T ss_pred EecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcC-------cceEEEeechHHHH-HHHHhhHHHhCCceEEEEc
Confidence 3466999999999999999997 777666554 35656 99999999999777 55554444333111 1
Q ss_pred CCC-cchhc-----ccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeE-EEEecCCC-CCceEEEEEecCHHHHHHHH
Q 024698 102 LSG-RAFRA-----QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVD-CRVCGDPH-SVLRFAFVEFADEHGARAAL 173 (264)
Q Consensus 102 ~~~-~~~~~-----~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~-v~i~~d~~-~~~g~afV~f~~~e~a~~Al 173 (264)
... ..++. .........|-+.+||+.+|++||.++|+..--+.. +.++.++. .+.|-|||+|++.+.|++|+
T Consensus 83 ~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al 162 (510)
T KOG4211|consen 83 AGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIAL 162 (510)
T ss_pred cCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHH
Confidence 100 01111 111124456889999999999999999997654444 45666665 57899999999999999999
Q ss_pred HhCCceeCCeeEEEeeC
Q 024698 174 NLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 174 ~ln~~~~~g~~i~V~~~ 190 (264)
.-|...+..|-|.|-.+
T Consensus 163 ~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 163 GRHRENIGHRYIEVFRS 179 (510)
T ss_pred HHHHHhhccceEEeehh
Confidence 77888899999999764
No 63
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.37 E-value=1.7e-13 Score=125.16 Aligned_cols=132 Identities=26% Similarity=0.347 Sum_probs=108.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeCCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~~~ 192 (264)
..+|+|+-.|+-..++.+|.++|+.+|+|.+|+++.|+.+ ++|.|||+|.+.++...|+.|.|+.+.|.+|.|..+..
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~sEa 257 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQLSEA 257 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecccHH
Confidence 4678999999999999999999999999999999999874 88999999999999999999999999999999997532
Q ss_pred CCC---CCCCCCCCCChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeeccc
Q 024698 193 AIL---PVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIIL 251 (264)
Q Consensus 193 ~~~---~~~~~~~~~~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d~ 251 (264)
... ...+-+.. .....+...+||+||.+.+++++|+.+|++| |.|..|.+++|.
T Consensus 258 eknr~a~~s~a~~~---k~~~~p~~rl~vgnLHfNite~~lr~ifepf--g~Ie~v~l~~d~ 314 (549)
T KOG0147|consen 258 EKNRAANASPALQG---KGFTGPMRRLYVGNLHFNITEDMLRGIFEPF--GKIENVQLTKDS 314 (549)
T ss_pred HHHHHHhccccccc---cccccchhhhhhcccccCchHHHHhhhccCc--ccceeeeecccc
Confidence 211 00000100 0001122339999999999999999999999 999999999995
No 64
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.36 E-value=7.7e-12 Score=85.89 Aligned_cols=72 Identities=43% Similarity=0.635 Sum_probs=66.4
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEee
Q 024698 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLP 189 (264)
Q Consensus 118 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~ 189 (264)
+|+|+|||+.+++++|+++|+.+|.|..+.+..++. .++|+|||+|.+.++|..|+ .+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 489999999999999999999999999999988765 46799999999999999999 8999999999998863
No 65
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.35 E-value=7.6e-12 Score=111.63 Aligned_cols=136 Identities=24% Similarity=0.276 Sum_probs=106.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhh-cCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFS-SCGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~-~~G~i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
..|.+||.|+|+++.+.+|+++|. +.|+|..|.++.|.. +++|||.|+|+++|.+++|+ .||.+.+.||+|.|....
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 456799999999999999999997 789999999999987 79999999999999999999 899999999999998743
Q ss_pred CCCCCC-------------------------C----------CCCCCCChhh----------------------------
Q 024698 192 TAILPV-------------------------N----------PTFLPRSEDE---------------------------- 208 (264)
Q Consensus 192 ~~~~~~-------------------------~----------~~~~~~~~~~---------------------------- 208 (264)
...+.. + ..+.+++.+.
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 211000 0 0011111100
Q ss_pred --------hcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeecccc
Q 024698 209 --------REMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIILF 252 (264)
Q Consensus 209 --------~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d~~ 252 (264)
..+-...+||.||+..+....|++.|.-. |.|++|-+-.|.-
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmA--Gkv~~vdf~idKe 252 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMA--GKVQSVDFSIDKE 252 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccc--eeeeeeceeeccc
Confidence 01223578999999999999999999998 8999988776643
No 66
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.34 E-value=2.2e-12 Score=104.88 Aligned_cols=79 Identities=25% Similarity=0.363 Sum_probs=73.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
.-.+|.|-||.+-+|.++|+.+|++||.|-+|.|..|+.+ ++|||||-|.+..+|+.|+ .|+|.+++|+.|+|+.++
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 3467999999999999999999999999999999999874 8999999999999999999 899999999999999875
Q ss_pred CC
Q 024698 192 TA 193 (264)
Q Consensus 192 ~~ 193 (264)
-.
T Consensus 92 yg 93 (256)
T KOG4207|consen 92 YG 93 (256)
T ss_pred cC
Confidence 33
No 67
>smart00360 RRM RNA recognition motif.
Probab=99.34 E-value=6.9e-12 Score=85.31 Aligned_cols=68 Identities=38% Similarity=0.581 Sum_probs=62.4
Q ss_pred EcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEe
Q 024698 121 VSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVL 188 (264)
Q Consensus 121 V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~ 188 (264)
|+|||..+++++|+++|++||.|..+.+..++. .++|+|||+|.+.++|.+|+ .+++..+.|+.|+|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 579999999999999999999999999988764 47899999999999999999 799999999998874
No 68
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.33 E-value=5.8e-12 Score=107.52 Aligned_cols=77 Identities=21% Similarity=0.352 Sum_probs=72.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeC
Q 024698 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 114 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~ 190 (264)
..-+||||+-|+++++|..|+..|+.||+|..|+|+.|.. .++|||||+|+++.+...|. .-+|..|+|+.|.|..-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 4568999999999999999999999999999999999976 48899999999999999999 79999999999999864
No 69
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=1.8e-11 Score=103.08 Aligned_cols=78 Identities=24% Similarity=0.397 Sum_probs=67.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHH-HhCCcee-CC--eeEE
Q 024698 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAAL-NLGGTML-GY--YPVR 186 (264)
Q Consensus 112 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al-~ln~~~~-~g--~~i~ 186 (264)
....+|+||||-|...-.|||++.+|+.||.|.+|.+.+... .+||||||.|.+.-+|..|| .|+|..- .| ..|.
T Consensus 15 rg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLV 94 (371)
T KOG0146|consen 15 RGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLV 94 (371)
T ss_pred CCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceE
Confidence 334678899999999999999999999999999999998877 69999999999999999999 7888653 33 4566
Q ss_pred Eee
Q 024698 187 VLP 189 (264)
Q Consensus 187 V~~ 189 (264)
|..
T Consensus 95 VK~ 97 (371)
T KOG0146|consen 95 VKF 97 (371)
T ss_pred EEe
Confidence 655
No 70
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.8e-12 Score=106.29 Aligned_cols=81 Identities=30% Similarity=0.402 Sum_probs=75.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeC
Q 024698 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 114 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~ 190 (264)
...|+||||+|...+||.-|...|-+||.|.+|.++.|.. +.+|||||+|...|+|.+|| .||+..+.||.|+|..+
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 3578999999999999999999999999999999998876 47899999999999999999 89999999999999998
Q ss_pred CCCC
Q 024698 191 KTAI 194 (264)
Q Consensus 191 ~~~~ 194 (264)
++..
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 7654
No 71
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=7.1e-12 Score=104.20 Aligned_cols=132 Identities=21% Similarity=0.273 Sum_probs=105.1
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCCCCCC
Q 024698 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILP 196 (264)
Q Consensus 118 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~~~~~ 196 (264)
.+|||+||+.+.+.+|..+|..||.+.++.+ ..||+||+|.+..+|.-|+ .+|+..+.|..+.|.+++.....
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m------k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~ 76 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADM------KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRG 76 (216)
T ss_pred ceeecccCCccchhHHHHHHhhcccccccee------ecccceeccCchhhhhcccchhcCceecceeeeeecccccccc
Confidence 5899999999999999999999999999988 4589999999999999999 89999999988999887643211
Q ss_pred C-CCCCC-----CCChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeeccccceeeE
Q 024698 197 V-NPTFL-----PRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIILFYFHLF 257 (264)
Q Consensus 197 ~-~~~~~-----~~~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d~~~~~~~ 257 (264)
. .|... .+....-......+.+.+++..+.+++|.+.|.++ |.++...+...++++.|-
T Consensus 77 ~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~--g~~~~~~~~~~~~~v~Fs 141 (216)
T KOG0106|consen 77 RGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPA--GEVTYVDARRNFAFVEFS 141 (216)
T ss_pred cCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhccc--CCCchhhhhccccceeeh
Confidence 1 11010 00001112256788999999999999999999999 899888888887777663
No 72
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=6.6e-12 Score=95.56 Aligned_cols=73 Identities=26% Similarity=0.361 Sum_probs=69.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeC
Q 024698 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 118 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~ 190 (264)
-|||.++...+|+++|.+.|..||+|+.+.+-.|+.+ .+|||+|+|++.++|++|+ .+||..+.|.+|.|.|+
T Consensus 74 Ii~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 74 IIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred EEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 4999999999999999999999999999999888875 7899999999999999999 89999999999999997
No 73
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.27 E-value=2.9e-11 Score=80.06 Aligned_cols=55 Identities=35% Similarity=0.500 Sum_probs=49.7
Q ss_pred HHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeC
Q 024698 133 LAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 133 L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~ 190 (264)
|+++|++||+|..+.+..+. +++|||+|.+.++|..|+ .|||..+.|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997765 589999999999999999 79999999999999874
No 74
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=7.8e-12 Score=103.97 Aligned_cols=139 Identities=17% Similarity=0.246 Sum_probs=109.4
Q ss_pred ccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC----CCc-
Q 024698 26 ETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ----GRK- 100 (264)
Q Consensus 26 ~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~----g~~- 100 (264)
.+.++++...+.+|..+|..||.|.++.+.. ||+||+|.+.. +|..++..+++ |.+
T Consensus 5 ~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~---------------gf~fv~fed~r----da~Dav~~l~~~~l~~e~~ 65 (216)
T KOG0106|consen 5 YIGRLPYRARERDVERFFKGYGKIPDADMKN---------------GFGFVEFEDPR----DADDAVHDLDGKELCGERL 65 (216)
T ss_pred eecccCCccchhHHHHHHhhccccccceeec---------------ccceeccCchh----hhhcccchhcCceecceee
Confidence 5678999999999999999999999988753 99999999999 77777777776 111
Q ss_pred -----C----CCCc------chhcc---cCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEE
Q 024698 101 -----R----LSGR------AFRAQ---REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVE 162 (264)
Q Consensus 101 -----~----~~~~------~~~~~---~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~ 162 (264)
+ -.+. ..+.. ........+.|.+++..+.+.+|.++|.++|.+....+ ..+++||+
T Consensus 66 vve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~------~~~~~~v~ 139 (216)
T KOG0106|consen 66 VVEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA------RRNFAFVE 139 (216)
T ss_pred eeecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh------hcccccee
Confidence 0 0000 00111 11223456999999999999999999999999955544 45799999
Q ss_pred ecCHHHHHHHH-HhCCceeCCeeEEEee
Q 024698 163 FADEHGARAAL-NLGGTMLGYYPVRVLP 189 (264)
Q Consensus 163 f~~~e~a~~Al-~ln~~~~~g~~i~V~~ 189 (264)
|...+++..|+ .+++..+.++.|.+..
T Consensus 140 Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 140 FSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred ehhhhhhhhcchhccchhhcCceeeecc
Confidence 99999999999 8999999999999943
No 75
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.25 E-value=2e-10 Score=101.91 Aligned_cols=212 Identities=15% Similarity=0.105 Sum_probs=142.0
Q ss_pred ccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhh-----------
Q 024698 26 ETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNN----------- 94 (264)
Q Consensus 26 ~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~----------- 94 (264)
-.+|++.|+||+||.+++.+||.|+.+.+..-+ .-+|++|.+.+ .|-.....
T Consensus 32 HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGk-------------nQAflem~d~~----sAvtmv~~y~~~~p~lr~~ 94 (492)
T KOG1190|consen 32 HLRNLPWEVTEEELISLGLPFGKVTNLLMLKGK-------------NQAFLEMADEE----SAVTMVNYYTSVTPVLRGQ 94 (492)
T ss_pred EeccCCccccHHHHHHhcccccceeeeeeeccc-------------hhhhhhhcchh----hhhheeecccccCccccCc
Confidence 467899999999999999999999999887543 23899999998 44442211
Q ss_pred -----------ccC--------CCc---------CCCCcchh------cccCCCCCCEEEEcCCCCCCCHHHHHHHhhcC
Q 024698 95 -----------FNQ--------GRK---------RLSGRAFR------AQREDSVRRTVYVSDIDQNITEERLAGLFSSC 140 (264)
Q Consensus 95 -----------~~~--------g~~---------~~~~~~~~------~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~ 140 (264)
|.. |+. ....+... ....+..--.+.|+|+-+-+|-|-|..+|++|
T Consensus 95 ~~yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~f 174 (492)
T KOG1190|consen 95 PIYIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKF 174 (492)
T ss_pred ceeehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhc
Confidence 111 000 00000000 00011111237899999999999999999999
Q ss_pred CCeeEEEEecCCCCCce-EEEEEecCHHHHHHHH-HhCCcee-CC-eeEEEeeCCCCC----------CCCCCCCCCCC-
Q 024698 141 GQVVDCRVCGDPHSVLR-FAFVEFADEHGARAAL-NLGGTML-GY-YPVRVLPSKTAI----------LPVNPTFLPRS- 205 (264)
Q Consensus 141 G~i~~v~i~~d~~~~~g-~afV~f~~~e~a~~Al-~ln~~~~-~g-~~i~V~~~~~~~----------~~~~~~~~~~~- 205 (264)
|.|..+.-.... .| -|.|+|.+.+.|..|. .|+|+.+ +| +.|++..++... +.....+.|-.
T Consensus 175 G~VlKIiTF~Kn---n~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd 251 (492)
T KOG1190|consen 175 GFVLKIITFTKN---NGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGD 251 (492)
T ss_pred ceeEEEEEEecc---cchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCc
Confidence 999877443322 23 5999999999999999 8999988 34 568887753211 00000011111
Q ss_pred ----------------------h--------------hhhcC--CCCeEEEcCCCC-CCCHHHHHHHHhhcCCCceEEEE
Q 024698 206 ----------------------E--------------DEREM--CSRTVYCTNIDK-KVPQAEVKQFFEAACGGEVRTLP 246 (264)
Q Consensus 206 ----------------------~--------------~~~~~--~~~~i~v~nL~~-~~te~~L~~~F~~~~gG~I~~v~ 246 (264)
+ ..... ....|.|.||.+ .+|.+-|.-+|+-| |+|.+|+
T Consensus 252 ~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvY--GdVqRVk 329 (492)
T KOG1190|consen 252 GQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVY--GDVQRVK 329 (492)
T ss_pred cccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhh--cceEEEE
Confidence 0 00011 146788888855 79999999999999 9999999
Q ss_pred eeccccceeeEEEE
Q 024698 247 CMIILFYFHLFIYY 260 (264)
Q Consensus 247 l~~d~~~~~~~~~~ 260 (264)
|..+.. -+++|+|
T Consensus 330 il~nkk-d~ALIQm 342 (492)
T KOG1190|consen 330 ILYNKK-DNALIQM 342 (492)
T ss_pred eeecCC-cceeeee
Confidence 998865 7888876
No 76
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.25 E-value=1.1e-10 Score=105.81 Aligned_cols=128 Identities=17% Similarity=0.181 Sum_probs=99.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeCCCCCC
Q 024698 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAIL 195 (264)
Q Consensus 116 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~~~~~~ 195 (264)
..-|-+.+||+++|++||.++|+.+ .|..+.+.+....+.|=|||+|.+.+++.+|++.+...+..|.|.|-.+.....
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~e~ 88 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGAEA 88 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCccc
Confidence 4457789999999999999999999 577888888777788999999999999999999999999999999987643222
Q ss_pred CCC-CCCCCCChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEE--EEeeccc
Q 024698 196 PVN-PTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRT--LPCMIIL 251 (264)
Q Consensus 196 ~~~-~~~~~~~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~--v~l~~d~ 251 (264)
... ....+... .....|.+++||..++++||.++|+.. +|.. +.++.|.
T Consensus 89 d~~~~~~g~~s~----~~d~vVRLRGLPfscte~dI~~FFaGL---~Iv~~gi~l~~d~ 140 (510)
T KOG4211|consen 89 DWVMRPGGPNSS----ANDGVVRLRGLPFSCTEEDIVEFFAGL---EIVPDGILLPMDQ 140 (510)
T ss_pred cccccCCCCCCC----CCCceEEecCCCccCcHHHHHHHhcCC---cccccceeeeccC
Confidence 110 01111111 256789999999999999999999988 4443 3345443
No 77
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.25 E-value=1.4e-10 Score=95.47 Aligned_cols=79 Identities=19% Similarity=0.242 Sum_probs=65.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCC---CceEEEEEecCHHHHHHHH-HhCCceeC---CeeEE
Q 024698 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS---VLRFAFVEFADEHGARAAL-NLGGTMLG---YYPVR 186 (264)
Q Consensus 114 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~---~~g~afV~f~~~e~a~~Al-~ln~~~~~---g~~i~ 186 (264)
..-|||||.+||.++...+|..+|..|--.+.+.|....+. .+-+|||+|.+...|.+|+ .|||..|+ +..|+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 34689999999999999999999999987777766543331 3469999999999999999 89999994 67788
Q ss_pred EeeCCC
Q 024698 187 VLPSKT 192 (264)
Q Consensus 187 V~~~~~ 192 (264)
+..++.
T Consensus 112 iElAKS 117 (284)
T KOG1457|consen 112 IELAKS 117 (284)
T ss_pred eeehhc
Confidence 877643
No 78
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.22 E-value=2.9e-11 Score=110.87 Aligned_cols=75 Identities=33% Similarity=0.487 Sum_probs=71.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 117 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
+.+||||+|+++++++|.++|+..|.|.+++++.|+.+ ++||||++|.+.+.+..|+ .|||..+.||+|+|.|+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccc
Confidence 78999999999999999999999999999999999874 8899999999999999999 899999999999999964
No 79
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.19 E-value=2.2e-11 Score=96.52 Aligned_cols=64 Identities=9% Similarity=-0.039 Sum_probs=59.9
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
....+.||++++|+++|+++|++||+|.+|.++.+..+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 35 ~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~k-------GfaFV~F~~~e----~A~~Al~~lng 98 (144)
T PLN03134 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSR-------GFGFVNFNDEG----AATAAISEMDG 98 (144)
T ss_pred CEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcc-------eEEEEEECCHH----HHHHHHHHcCC
Confidence 367899999999999999999999999999999999998999 99999999999 88888888876
No 80
>smart00361 RRM_1 RNA recognition motif.
Probab=99.17 E-value=1.6e-10 Score=80.24 Aligned_cols=59 Identities=20% Similarity=0.274 Sum_probs=51.6
Q ss_pred HHHHHHHhh----cCCCeeEEE-EecCC----CCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEe
Q 024698 130 EERLAGLFS----SCGQVVDCR-VCGDP----HSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVL 188 (264)
Q Consensus 130 e~~L~~~F~----~~G~i~~v~-i~~d~----~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~ 188 (264)
+++|+++|+ +||.|.++. +..++ ..++|||||+|.+.++|.+|+ .|||..+.|+.|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 578899998 999999995 65554 347899999999999999999 899999999999863
No 81
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.08 E-value=1.4e-10 Score=79.66 Aligned_cols=60 Identities=12% Similarity=0.125 Sum_probs=54.2
Q ss_pred ccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 26 ETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 26 ~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
...|++.++|+++|+++|++||+|..+.++.+ .+++.+ |||||+|.+.+ +|.+|+..+++
T Consensus 2 ~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~-------~~a~V~F~~~~----~a~~a~~~l~g 61 (70)
T PF00076_consen 2 YVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSK-------GYAFVEFESEE----DAEKALEELNG 61 (70)
T ss_dssp EEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEE-------EEEEEEESSHH----HHHHHHHHHTT
T ss_pred EEcCCCCcCCHHHHHHHHHHhhhccccccccc-cccccc-------ceEEEEEcCHH----HHHHHHHHcCC
Confidence 46799999999999999999999999999998 445778 99999999999 88888888876
No 82
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.05 E-value=2.3e-08 Score=88.15 Aligned_cols=202 Identities=17% Similarity=0.143 Sum_probs=145.7
Q ss_pred ccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC-----C----
Q 024698 28 KKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ-----G---- 98 (264)
Q Consensus 28 ~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~-----g---- 98 (264)
-|--|-+|.+-|..++-..|+|.+|.|.+. ++ --|.|+|++.+ .|++|...+|| |
T Consensus 128 lNp~YpItvDVly~Icnp~GkVlRIvIfkk-ng-----------VQAmVEFdsv~----~AqrAk~alNGADIYsGCCTL 191 (494)
T KOG1456|consen 128 LNPQYPITVDVLYTICNPQGKVLRIVIFKK-NG-----------VQAMVEFDSVE----VAQRAKAALNGADIYSGCCTL 191 (494)
T ss_pred ecCccccchhhhhhhcCCCCceEEEEEEec-cc-----------eeeEEeechhH----HHHHHHhhcccccccccceeE
Confidence 345588899999999999999999998765 22 46999999999 88899999998 0
Q ss_pred ----------------------------------Cc-----CCC-----Ccchhc-------------------------
Q 024698 99 ----------------------------------RK-----RLS-----GRAFRA------------------------- 109 (264)
Q Consensus 99 ----------------------------------~~-----~~~-----~~~~~~------------------------- 109 (264)
+. +.. .+..+.
T Consensus 192 KIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~ 271 (494)
T KOG1456|consen 192 KIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDG 271 (494)
T ss_pred EEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccc
Confidence 00 000 000000
Q ss_pred c---------cCCCCCCEEEEcCCC-CCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCc
Q 024698 110 Q---------REDSVRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGT 178 (264)
Q Consensus 110 ~---------~~~~~~~~lfV~nLp-~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~ 178 (264)
. ........+.|-+|. ..+.-+-|-.+|-.||.|..|++++.+. |-|.|++.+....++|+ .||+.
T Consensus 272 ~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~---gtamVemgd~~aver~v~hLnn~ 348 (494)
T KOG1456|consen 272 YRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP---GTAMVEMGDAYAVERAVTHLNNI 348 (494)
T ss_pred cccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc---ceeEEEcCcHHHHHHHHHHhccC
Confidence 0 000012248888998 4677788999999999999999977654 89999999999999999 89999
Q ss_pred eeCCeeEEEeeCCCCCC-CCC--------CC---CCCCCh-----------hhhcCCCCeEEEcCCCCCCCHHHHHHHHh
Q 024698 179 MLGYYPVRVLPSKTAIL-PVN--------PT---FLPRSE-----------DEREMCSRTVYCTNIDKKVPQAEVKQFFE 235 (264)
Q Consensus 179 ~~~g~~i~V~~~~~~~~-~~~--------~~---~~~~~~-----------~~~~~~~~~i~v~nL~~~~te~~L~~~F~ 235 (264)
.+.|.+|.|..++.+.. +.. |+ |+.... .....+.+.|..-|.|..+||+.|-++|.
T Consensus 349 ~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~n 428 (494)
T KOG1456|consen 349 PLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICN 428 (494)
T ss_pred ccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhh
Confidence 99999999999876532 111 11 111111 01134678899999999999999999998
Q ss_pred hcCCCceEEEEeec
Q 024698 236 AACGGEVRTLPCMI 249 (264)
Q Consensus 236 ~~~gG~I~~v~l~~ 249 (264)
..-- .-++|+|..
T Consensus 429 ek~v-~~~svkvFp 441 (494)
T KOG1456|consen 429 EKDV-PPTSVKVFP 441 (494)
T ss_pred hcCC-CcceEEeec
Confidence 8721 345566553
No 83
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.05 E-value=1.2e-09 Score=93.60 Aligned_cols=121 Identities=22% Similarity=0.275 Sum_probs=95.8
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC----
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ---- 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~---- 97 (264)
..+....||++++|+++|+++|++||+|..+.++.+..+++++ |||||+|.+.+ +|..|+..+++
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~-------g~~~v~f~~~~----~~~~a~~~~~~~~~~ 183 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSR-------GFAFVEFESEE----SAEKAIEELNGKELE 183 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccC-------ceEEEEecCHH----HHHHHHHHcCCCeEC
Confidence 3678999999999999999999999999999999999888999 99999999999 88899888886
Q ss_pred CCc-CCC-------Ccchhc---------------ccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC
Q 024698 98 GRK-RLS-------GRAFRA---------------QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH 153 (264)
Q Consensus 98 g~~-~~~-------~~~~~~---------------~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~ 153 (264)
|++ ++. .+.... .........+++++++..++..++...|..+|.+....+.....
T Consensus 184 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (306)
T COG0724 184 GRPLRVQKAQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKD 262 (306)
T ss_pred CceeEeeccccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCC
Confidence 333 111 111111 00111345699999999999999999999999997776654443
No 84
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.02 E-value=1e-09 Score=95.62 Aligned_cols=77 Identities=18% Similarity=0.380 Sum_probs=68.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-H-hCCceeCCeeEEEee
Q 024698 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-N-LGGTMLGYYPVRVLP 189 (264)
Q Consensus 112 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~-ln~~~~~g~~i~V~~ 189 (264)
++...++|||++|-..+++.+|+++|.+||+|+++++... +++|||+|.+.++|+.|. + +|...++|++|+|.|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~W 299 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKW 299 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc----cccceeeehhhHHHHHHHHhhcceeeecceEEEEEe
Confidence 3445678999999999999999999999999999999654 459999999999999999 4 888889999999999
Q ss_pred CCC
Q 024698 190 SKT 192 (264)
Q Consensus 190 ~~~ 192 (264)
.++
T Consensus 300 g~~ 302 (377)
T KOG0153|consen 300 GRP 302 (377)
T ss_pred CCC
Confidence 876
No 85
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=4.9e-10 Score=93.43 Aligned_cols=63 Identities=13% Similarity=0.231 Sum_probs=60.3
Q ss_pred CcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
+..+-||+-+|++.+|++||.+||+|.+|.+.+++.||.+| |||||.|.+.+ +|.+|+..++|
T Consensus 191 tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~k-------GFAFVtF~sRd----dA~rAI~~LnG 253 (270)
T KOG0122|consen 191 TVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSK-------GFAFVTFESRD----DAARAIADLNG 253 (270)
T ss_pred eeEEecCccccChhHHHHHhhccCccceeEEEEccccCccc-------ceEEEEEecHH----HHHHHHHHccC
Confidence 56788999999999999999999999999999999999999 99999999999 88899999987
No 86
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.00 E-value=1.2e-08 Score=89.10 Aligned_cols=144 Identities=20% Similarity=0.250 Sum_probs=104.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCee--------EEEEecCCC-CCceEEEEEecCHHHHHHHH-HhCCceeC
Q 024698 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVV--------DCRVCGDPH-SVLRFAFVEFADEHGARAAL-NLGGTMLG 181 (264)
Q Consensus 112 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~d~~-~~~g~afV~f~~~e~a~~Al-~ln~~~~~ 181 (264)
.+.....|||+|||.++|.+++.++|++||-|. .|+|.++.. +.+|=|.+.|...+++.-|+ .|++..+.
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 344566799999999999999999999999773 477777766 68899999999999999999 79999999
Q ss_pred CeeEEEeeCCCCCCCC-CC----------------------CCCCCCh-hhhcCCCCeEEEcCCC--C--CCC-------
Q 024698 182 YYPVRVLPSKTAILPV-NP----------------------TFLPRSE-DEREMCSRTVYCTNID--K--KVP------- 226 (264)
Q Consensus 182 g~~i~V~~~~~~~~~~-~~----------------------~~~~~~~-~~~~~~~~~i~v~nL~--~--~~t------- 226 (264)
|+.|+|..++.++... .+ .+.|... .......++|.+.|+= . ..+
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 9999999886554211 00 0122221 1123356789899872 1 233
Q ss_pred HHHHHHHHhhcCCCceEEEEee-ccccceeeE
Q 024698 227 QAEVKQFFEAACGGEVRTLPCM-IILFYFHLF 257 (264)
Q Consensus 227 e~~L~~~F~~~~gG~I~~v~l~-~d~~~~~~~ 257 (264)
+++|++-.++| |.|.+|.|. +..+++..+
T Consensus 290 kedl~eec~K~--G~v~~vvv~d~hPdGvvtV 319 (382)
T KOG1548|consen 290 KEDLTEECEKF--GQVRKVVVYDRHPDGVVTV 319 (382)
T ss_pred HHHHHHHHHHh--CCcceEEEeccCCCceeEE
Confidence 34556667888 899999987 233355433
No 87
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.98 E-value=9.8e-10 Score=104.25 Aligned_cols=73 Identities=25% Similarity=0.389 Sum_probs=68.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
.++|||||.|+.++++.+|.++|+.||+|.+|.++ .++|||||.+....+|.+|+ +|+...+.++.|+|.|+.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li----~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILI----PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeec----cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 46889999999999999999999999999999884 35689999999999999999 899999999999999974
No 88
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=4.2e-10 Score=93.42 Aligned_cols=63 Identities=10% Similarity=0.031 Sum_probs=57.6
Q ss_pred CcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
..++.+|.++.+.++|++.|++||+|++.+|+.|+.+++|| ||+||+|.+.+ .|.+|...-+-
T Consensus 14 KifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rsk-------GyGfVTf~d~~----aa~rAc~dp~p 76 (247)
T KOG0149|consen 14 KIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSK-------GYGFVTFRDAE----AATRACKDPNP 76 (247)
T ss_pred EEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCcccc-------ceeeEEeecHH----HHHHHhcCCCC
Confidence 34777899999999999999999999999999999999999 99999999999 88888776654
No 89
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.92 E-value=1.1e-08 Score=84.52 Aligned_cols=145 Identities=18% Similarity=0.246 Sum_probs=106.0
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCC-ccccccCCCceEEeccCCcccccchHHHHHhhccC----
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHT-DHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ---- 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~-~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~---- 97 (264)
+++++..|+.++...||..||..|---..+.+.....+++ .+ -+||+.|.+.. .|..+++.+||
T Consensus 35 RTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~-------pvaFatF~s~q----~A~aamnaLNGvrFD 103 (284)
T KOG1457|consen 35 RTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCK-------PVAFATFTSHQ----FALAAMNALNGVRFD 103 (284)
T ss_pred ceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCcccc-------ceEEEEecchH----HHHHHHHHhcCeeec
Confidence 3788999999999999999999998777777766554422 34 79999999999 88888888888
Q ss_pred ------------------CCcCCCC--------------cchh----cccC-----------------------------
Q 024698 98 ------------------GRKRLSG--------------RAFR----AQRE----------------------------- 112 (264)
Q Consensus 98 ------------------g~~~~~~--------------~~~~----~~~~----------------------------- 112 (264)
.+++.++ .... .+.+
T Consensus 104 pE~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l 183 (284)
T KOG1457|consen 104 PETGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEAL 183 (284)
T ss_pred cccCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhh
Confidence 0000000 0000 0000
Q ss_pred --------------------C---CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHH
Q 024698 113 --------------------D---SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGA 169 (264)
Q Consensus 113 --------------------~---~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a 169 (264)
. ....||||.||.+++||++|+.+|+.|-....++|... .....||++|++.+.|
T Consensus 184 ~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~g~~vaf~~~~~~~~a 261 (284)
T KOG1457|consen 184 SAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--GGMPVAFADFEEIEQA 261 (284)
T ss_pred hhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--CCcceEeecHHHHHHH
Confidence 0 00125999999999999999999999987777766322 2345899999999999
Q ss_pred HHHH-HhCCcee
Q 024698 170 RAAL-NLGGTML 180 (264)
Q Consensus 170 ~~Al-~ln~~~~ 180 (264)
..|| .|.|..+
T Consensus 262 t~am~~lqg~~~ 273 (284)
T KOG1457|consen 262 TDAMNHLQGNLL 273 (284)
T ss_pred HHHHHHhhccee
Confidence 9999 7887655
No 90
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.87 E-value=4.2e-10 Score=92.44 Aligned_cols=109 Identities=23% Similarity=0.296 Sum_probs=93.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTA 193 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~~ 193 (264)
..+||||+|+...++|+-|.++|-+-|+|..|.|..++.....||||.|.++-+..-|+ -+||..+.++++.+..
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~---- 83 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL---- 83 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhccc----
Confidence 56899999999999999999999999999999998877743349999999999999999 6999999999988775
Q ss_pred CCCCCCCCCCCChhhhcCCCCeEEEcC----CCCCCCHHHHHHHHhhcCCCceEEEEeecccc
Q 024698 194 ILPVNPTFLPRSEDEREMCSRTVYCTN----IDKKVPQAEVKQFFEAACGGEVRTLPCMIILF 252 (264)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~i~v~n----L~~~~te~~L~~~F~~~~gG~I~~v~l~~d~~ 252 (264)
+.|+ |+..++++.+...|+.. |++..+++..|-.
T Consensus 84 -----------------------r~G~shapld~r~~~ei~~~v~s~a--~p~~~~R~~~~~d 121 (267)
T KOG4454|consen 84 -----------------------RCGNSHAPLDERVTEEILYEVFSQA--GPIEGVRIPTDND 121 (267)
T ss_pred -----------------------ccCCCcchhhhhcchhhheeeeccc--CCCCCcccccccc
Confidence 1233 66778888888889888 8888888887643
No 91
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=3.4e-09 Score=92.68 Aligned_cols=75 Identities=25% Similarity=0.501 Sum_probs=70.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeC
Q 024698 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 116 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~ 190 (264)
...|||.-|.+-+|+++|.-+|+.||.|.+|.+++|..+ +--||||+|++.+++++|. +|++..+.++.|.|..+
T Consensus 239 eNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 239 ENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred cceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 456999999999999999999999999999999999885 5679999999999999999 99999999999999875
No 92
>smart00360 RRM RNA recognition motif.
Probab=98.84 E-value=5.4e-09 Score=70.74 Aligned_cols=59 Identities=14% Similarity=0.153 Sum_probs=53.1
Q ss_pred ccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 28 KKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 28 ~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.|++..+++++|+++|++||+|..+.++.+..+++++ |||||+|.+.+ +|.+++..+++
T Consensus 2 ~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~-------~~a~v~f~~~~----~a~~a~~~~~~ 60 (71)
T smart00360 2 GNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSK-------GFAFVEFESEE----DAEKALEALNG 60 (71)
T ss_pred CCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCC-------ceEEEEeCCHH----HHHHHHHHcCC
Confidence 5788999999999999999999999999988777788 99999999999 88888887774
No 93
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.84 E-value=3.7e-09 Score=72.87 Aligned_cols=59 Identities=17% Similarity=0.166 Sum_probs=51.1
Q ss_pred ccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhcc
Q 024698 26 ETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFN 96 (264)
Q Consensus 26 ~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~ 96 (264)
...|++..+|+++|+++|+.||.|..++++.++. +..+ |+|||+|.+.+ +|.+++..++
T Consensus 2 ~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~-------~~a~v~f~~~~----~a~~al~~~~ 60 (70)
T PF14259_consen 2 YISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSR-------GFAFVEFSSEE----DAKRALELLN 60 (70)
T ss_dssp EEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEE-------EEEEEEESSHH----HHHHHHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccC-------CEEEEEeCCHH----HHHHHHHHCC
Confidence 3578999999999999999999999999999877 6888 99999999999 7778877765
No 94
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.84 E-value=2.8e-09 Score=86.93 Aligned_cols=63 Identities=11% Similarity=0.145 Sum_probs=57.8
Q ss_pred CcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
++.+-||-|-.|.++|+.+|++||.|.+|.||+|..|..++ |||||.|.... +|+.|+..|+|
T Consensus 15 SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sR-------gFaFVrf~~k~----daedA~damDG 77 (256)
T KOG4207|consen 15 SLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSR-------GFAFVRFHDKR----DAEDALDAMDG 77 (256)
T ss_pred eEEecceeccCCHHHHHHHHHHhCcccceeccccccccccc-------ceeEEEeeecc----hHHHHHHhhcc
Confidence 68899999999999999999999999999999999998899 99999999999 66666666666
No 95
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=4.4e-08 Score=89.67 Aligned_cols=131 Identities=21% Similarity=0.292 Sum_probs=88.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-----CCce---EEEEEecCHHHHHHHH-H--h--CCce
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-----SVLR---FAFVEFADEHGARAAL-N--L--GGTM 179 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-----~~~g---~afV~f~~~e~a~~Al-~--l--n~~~ 179 (264)
+..+++||||+||++++|++|...|..||.+ .|.+..... .++| |+|+.|+++.++..-+ . . .+..
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~y 334 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYY 334 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceE
Confidence 3356789999999999999999999999987 344542221 2667 9999999998877655 2 1 1111
Q ss_pred e-------CCeeEEEeeCCCCCCCCCCCCCCCChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeecc
Q 024698 180 L-------GYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMII 250 (264)
Q Consensus 180 ~-------~g~~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d 250 (264)
| ..+.+.|.++... ...|... ....-...+|||||+||..++.++|-.+|+..+| .|+.+-|..|
T Consensus 335 f~vss~~~k~k~VQIrPW~la----Ds~fv~d-~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyG-gV~yaGIDtD 406 (520)
T KOG0129|consen 335 FKVSSPTIKDKEVQIRPWVLA----DSDFVLD-HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFG-GVLYVGIDTD 406 (520)
T ss_pred EEEecCcccccceeEEeeEec----cchhhhc-cCcccCccceEEecCCCCcchHHHHHHHHHHhcC-ceEEEEeccC
Confidence 1 1222333322110 0111111 1111226789999999999999999999996555 9999999888
No 96
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.83 E-value=1.6e-08 Score=93.62 Aligned_cols=209 Identities=18% Similarity=0.197 Sum_probs=135.7
Q ss_pred CcccccccchhcHHHHHHHhhcc-----------CC-ccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHH
Q 024698 24 NLETKKSESEFTVQKLVDMFTKL-----------NP-LAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRR 91 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~~-----------G~-i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a 91 (264)
-..+.++++.++++.+..+|..- |+ +..+.+- ..+ .|||++|.+.++|. .+
T Consensus 177 r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n------~~~-------nfa~ie~~s~~~at----~~ 239 (500)
T KOG0120|consen 177 RLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN------LEK-------NFAFIEFRSISEAT----EA 239 (500)
T ss_pred hhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec------ccc-------cceeEEecCCCchh----hh
Confidence 45778889999999999998875 32 3333331 333 89999999999444 43
Q ss_pred Hhhcc---CCCc-CCCC---------------------cchhcccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEE
Q 024698 92 RNNFN---QGRK-RLSG---------------------RAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDC 146 (264)
Q Consensus 92 ~~~~~---~g~~-~~~~---------------------~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v 146 (264)
..... .|.. ++.. ..............+||++||...++++++++...||.+...
T Consensus 240 ~~~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f 319 (500)
T KOG0120|consen 240 MALDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAF 319 (500)
T ss_pred hcccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhh
Confidence 32211 1222 0000 000111112234469999999999999999999999999999
Q ss_pred EEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCCCCCCCCCCCC------CCChh----hhcCCC
Q 024698 147 RVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFL------PRSED----EREMCS 213 (264)
Q Consensus 147 ~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~~~~~~~~~~~------~~~~~----~~~~~~ 213 (264)
+++.|.. .++||||.+|.++.....|+ .|||+.+.++.|.|..+-.+....++... +.-+. ......
T Consensus 320 ~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t 399 (500)
T KOG0120|consen 320 RLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPT 399 (500)
T ss_pred eeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcc
Confidence 9998887 48999999999999999999 89999999999999886433221111100 00000 001133
Q ss_pred CeEEEcCCC--C-CCCHHHHHHH-------HhhcCCCceEEEEeeccc
Q 024698 214 RTVYCTNID--K-KVPQAEVKQF-------FEAACGGEVRTLPCMIIL 251 (264)
Q Consensus 214 ~~i~v~nL~--~-~~te~~L~~~-------F~~~~gG~I~~v~l~~d~ 251 (264)
..|.+.|+= . -.+++|..++ +..| |.|.+|.+++++
T Consensus 400 ~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~--g~v~~v~ipr~~ 445 (500)
T KOG0120|consen 400 EVLCLTNVVTPDELKDDEEYEEILEDVRTECAKF--GAVRSVEIPRPY 445 (500)
T ss_pred hhhhhhhcCCHHHhcchHHHHHHHHHHHHHhccc--CceeEEecCCCC
Confidence 444555541 1 1234444444 4466 899999999994
No 97
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=5.1e-08 Score=89.24 Aligned_cols=162 Identities=15% Similarity=0.124 Sum_probs=111.7
Q ss_pred CcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC------
Q 024698 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ------ 97 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~------ 97 (264)
...+.-|+.+++|+.|...|..||.+ .|.+|... ..+.+.-.+...||+|+-|+++..++ .-..+.....+
T Consensus 261 KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~-~~~~~~ppkGs~~YvflvFe~E~sV~-~Ll~aC~~~~~~~yf~v 337 (520)
T KOG0129|consen 261 KVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKA-NSRGRAPPKGSYGYVFLVFEDERSVQ-SLLSACSEGEGNYYFKV 337 (520)
T ss_pred ceeecCCCccccHHHHHhhcccccce-EeecCCCc-cccccCCCCCcccEEEEEecchHHHH-HHHHHHhhcccceEEEE
Confidence 44777799999999999999999998 57777522 22444334444469999999999554 22222222111
Q ss_pred ----CCcC-CCCcc---------hhcccCCCCCCEEEEcCCCCCCCHHHHHHHhh-cCCCeeEEEEecCCC--CCceEEE
Q 024698 98 ----GRKR-LSGRA---------FRAQREDSVRRTVYVSDIDQNITEERLAGLFS-SCGQVVDCRVCGDPH--SVLRFAF 160 (264)
Q Consensus 98 ----g~~~-~~~~~---------~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~-~~G~i~~v~i~~d~~--~~~g~af 160 (264)
-+.+ +..+. ......-...+|||||+||.-++-++|-.+|. -||.|..+-|-.|++ .++|-|-
T Consensus 338 ss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGR 417 (520)
T KOG0129|consen 338 SSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGR 417 (520)
T ss_pred ecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcce
Confidence 0001 00000 11122233678999999999999999999999 799999999988855 4999999
Q ss_pred EEecCHHHHHHHHH-----hCCceeCCeeEEEee
Q 024698 161 VEFADEHGARAALN-----LGGTMLGYYPVRVLP 189 (264)
Q Consensus 161 V~f~~~e~a~~Al~-----ln~~~~~g~~i~V~~ 189 (264)
|+|.+..+..+||. ++-..+. +++.|.+
T Consensus 418 VtFsnqqsYi~AIsarFvql~h~d~~-KRVEIkP 450 (520)
T KOG0129|consen 418 VTFSNQQAYIKAISARFVQLDHTDID-KRVEIKP 450 (520)
T ss_pred eeecccHHHHHHHhhheEEEeccccc-eeeeecc
Confidence 99999999999993 3333332 3556655
No 98
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.79 E-value=6.9e-09 Score=89.97 Aligned_cols=61 Identities=15% Similarity=0.141 Sum_probs=56.2
Q ss_pred CcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
-+-+.|+++.+.+.||+.+|.+||+|++|.|+.+..+ || |||||+|++.+ +|.+|+.+|+|
T Consensus 98 RLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG--SK-------GFGFVTmen~~----dadRARa~LHg 158 (376)
T KOG0125|consen 98 RLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG--SK-------GFGFVTMENPA----DADRARAELHG 158 (376)
T ss_pred eeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC--CC-------ccceEEecChh----hHHHHHHHhhc
Confidence 4578899999999999999999999999999999876 44 99999999999 88899999998
No 99
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.77 E-value=2.1e-08 Score=92.50 Aligned_cols=80 Identities=25% Similarity=0.350 Sum_probs=72.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
..+.|||.+|+..+.-.+|+.+|++||+|+-.+++.+..+ -+.|+||++.+.++|.+|| .|+...+.|+.|.|..++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 4567999999999999999999999999999999988764 5689999999999999999 899999999999999877
Q ss_pred CCC
Q 024698 192 TAI 194 (264)
Q Consensus 192 ~~~ 194 (264)
..+
T Consensus 484 NEp 486 (940)
T KOG4661|consen 484 NEP 486 (940)
T ss_pred cCc
Confidence 654
No 100
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.77 E-value=1.7e-08 Score=85.84 Aligned_cols=83 Identities=24% Similarity=0.346 Sum_probs=75.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEee
Q 024698 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLP 189 (264)
Q Consensus 112 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~ 189 (264)
.....+.+||+|+.+.+|.++++.+|+.||.|..+.+..|+. +++||+||+|.+.+.+.++++||+..+.|+.+.|.+
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVTL 176 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceeee
Confidence 344678899999999999999999999999999999988876 489999999999999999999999999999999999
Q ss_pred CCCCC
Q 024698 190 SKTAI 194 (264)
Q Consensus 190 ~~~~~ 194 (264)
.+..+
T Consensus 177 ~r~~~ 181 (231)
T KOG4209|consen 177 KRTNV 181 (231)
T ss_pred eeeec
Confidence 87654
No 101
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.76 E-value=8.6e-09 Score=84.82 Aligned_cols=143 Identities=24% Similarity=0.224 Sum_probs=114.8
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccCCCcCC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKRL 102 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~g~~~~ 102 (264)
.++++.|+..++|++-|.|+|-+-|+|..+.|+.++.. +. .||||.|.++- ...-|+..+||.+.-
T Consensus 10 rtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~-~~--------kFa~v~f~~E~----sv~~a~~L~ng~~l~- 75 (267)
T KOG4454|consen 10 RTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQ-EQ--------KFAYVFFPNEN----SVQLAGQLENGDDLE- 75 (267)
T ss_pred hHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccC-CC--------ceeeeeccccc----chhhhhhhcccchhc-
Confidence 47899999999999999999999999999999998875 32 59999999999 667888888874431
Q ss_pred CCcchhcccCCCCCCEEEEcC----CCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHH-HhC
Q 024698 103 SGRAFRAQREDSVRRTVYVSD----IDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAAL-NLG 176 (264)
Q Consensus 103 ~~~~~~~~~~~~~~~~lfV~n----Lp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al-~ln 176 (264)
.....++++.|+ |...++++.+...|+.-|++..+++..+.. .++-++|+.+.-..+...++ ...
T Consensus 76 ---------~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~ 146 (267)
T KOG4454|consen 76 ---------EDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQ 146 (267)
T ss_pred ---------cchhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhc
Confidence 111345677777 888899999999999999999999987766 46779999999888888888 666
Q ss_pred CceeCCeeEEEe
Q 024698 177 GTMLGYYPVRVL 188 (264)
Q Consensus 177 ~~~~~g~~i~V~ 188 (264)
+....-+++.+.
T Consensus 147 ~l~~~~~~~~~g 158 (267)
T KOG4454|consen 147 GLELFQKKVTIG 158 (267)
T ss_pred ccCcCCCCcccc
Confidence 655544444443
No 102
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.75 E-value=5.5e-09 Score=100.28 Aligned_cols=142 Identities=13% Similarity=-0.005 Sum_probs=117.3
Q ss_pred cccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccCCCcCCCC
Q 024698 25 LETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSG 104 (264)
Q Consensus 25 ~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~g~~~~~~ 104 (264)
.++.|+.+.|.+.+|...|+.+|.+..+++.-....++.| |+||++|..++ .+.+++.-... .+-
T Consensus 670 ~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~r-------G~~Y~~F~~~~----~~~aaV~f~d~---~~~- 734 (881)
T KOG0128|consen 670 IFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFR-------GKAYVEFLKPE----HAGAAVAFRDS---CFF- 734 (881)
T ss_pred HHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccc-------cceeeEeecCC----chhhhhhhhhh---hhh-
Confidence 3778899999999999999999999888888666667888 99999999999 66566532111 000
Q ss_pred cchhcccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHH-HhCCceeCC
Q 024698 105 RAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAAL-NLGGTMLGY 182 (264)
Q Consensus 105 ~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al-~ln~~~~~g 182 (264)
....++|.|.|+..|.++++.+++.+|.+.+++++..+. .++|-|+|.|.++.++.++. ..+...++-
T Consensus 735 ----------gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE 804 (881)
T KOG0128|consen 735 ----------GKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRE 804 (881)
T ss_pred ----------hhhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhh
Confidence 134599999999999999999999999999999887776 69999999999999999999 888888877
Q ss_pred eeEEEeeCC
Q 024698 183 YPVRVLPSK 191 (264)
Q Consensus 183 ~~i~V~~~~ 191 (264)
+.+.|..+.
T Consensus 805 ~~~~v~vsn 813 (881)
T KOG0128|consen 805 NNGEVQVSN 813 (881)
T ss_pred cCccccccC
Confidence 777777643
No 103
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.74 E-value=1.3e-08 Score=85.41 Aligned_cols=139 Identities=17% Similarity=0.239 Sum_probs=105.5
Q ss_pred HHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC---CCc--CCCCcchhccc---
Q 024698 40 VDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ---GRK--RLSGRAFRAQR--- 111 (264)
Q Consensus 40 ~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~---g~~--~~~~~~~~~~~--- 111 (264)
...|+-|-......+.++..+ ..+ +++|+.|.... +-.++...=++ |++ +......|.+.
T Consensus 117 ~~~f~~~p~L~ktk~v~~~p~-~~~-------~~~~~~~k~s~----a~~k~~~~~~~Kki~~~~VR~a~gtswedPsl~ 184 (290)
T KOG0226|consen 117 PVVFSEYPSLVKTKLVRDRPQ-PIR-------PEAFESFKASD----ALLKAETEKEKKKIGKPPVRLAAGTSWEDPSLA 184 (290)
T ss_pred hhhhccchhhhhhhhhhcCCC-ccC-------cccccCcchhh----hhhhhccccccccccCcceeeccccccCCcccc
Confidence 567777777777777777665 666 99999998877 44444333232 222 33333333322
Q ss_pred -CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHH-HhCCceeCCeeEEE
Q 024698 112 -EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRV 187 (264)
Q Consensus 112 -~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V 187 (264)
-+..+..||.|.|..+++++-|-..|.+|-.....++++|+.+ ++||+||.|.+..++..|+ +|||..++.|+|++
T Consensus 185 ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 185 EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred cCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 2225667999999999999999999999998888899999874 8899999999999999999 89999999999988
Q ss_pred eeC
Q 024698 188 LPS 190 (264)
Q Consensus 188 ~~~ 190 (264)
..+
T Consensus 265 RkS 267 (290)
T KOG0226|consen 265 RKS 267 (290)
T ss_pred hhh
Confidence 754
No 104
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.72 E-value=1.7e-08 Score=86.59 Aligned_cols=63 Identities=11% Similarity=0.067 Sum_probs=57.4
Q ss_pred CcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
++++.-|+|+.+|.+|+..|++||+|..|+|+.+.-+|+++ |||||+|+++. ++..|...-.|
T Consensus 103 TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgksk-------GYAFIeye~er----dm~~AYK~adG 165 (335)
T KOG0113|consen 103 TLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSK-------GYAFIEYEHER----DMKAAYKDADG 165 (335)
T ss_pred eeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCcc-------ceEEEEeccHH----HHHHHHHhccC
Confidence 77888899999999999999999999999999999999999 99999999999 66666665554
No 105
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.72 E-value=1.6e-08 Score=88.78 Aligned_cols=157 Identities=17% Similarity=0.186 Sum_probs=118.3
Q ss_pred CcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhc----cCCC
Q 024698 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNF----NQGR 99 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~----~~g~ 99 (264)
..+.+++...+.+.+...++..+|....+.+........++ ||+++.|...+ ++..++... +.+.
T Consensus 90 ~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk-------~~~s~~f~~ks----~~~~~l~~s~~~~~~~~ 158 (285)
T KOG4210|consen 90 TFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSK-------GGLSVHFAGKS----QFFAALEESGSKVLDGN 158 (285)
T ss_pred cccccccccchhhccccccchhhcCcccchhhhhccccccc-------cceeeccccHH----HHHHHHHhhhccccccc
Confidence 44667778888888899999999999999998888777888 99999999999 444443322 2211
Q ss_pred c---CCCC-cch-----hcccCCCCCCEEE-EcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEecCHH
Q 024698 100 K---RLSG-RAF-----RAQREDSVRRTVY-VSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEH 167 (264)
Q Consensus 100 ~---~~~~-~~~-----~~~~~~~~~~~lf-V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~~g~afV~f~~~e 167 (264)
. .+.. +.. ..........++| |++|+..+++++|+.+|..+|.|..+++..++.+ .+|||||.|.+..
T Consensus 159 ~~~~dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~ 238 (285)
T KOG4210|consen 159 KGEKDLNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGN 238 (285)
T ss_pred cccCcccccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhch
Confidence 1 1110 000 0011111334555 9999999999999999999999999999888774 7899999999999
Q ss_pred HHHHHHHhCCceeCCeeEEEeeCC
Q 024698 168 GARAALNLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 168 ~a~~Al~ln~~~~~g~~i~V~~~~ 191 (264)
.+..++..+...+.++++.+....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 239 SKKLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred hHHHHhhcccCcccCcccccccCC
Confidence 999988447888899999988743
No 106
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.71 E-value=8.8e-10 Score=88.14 Aligned_cols=62 Identities=11% Similarity=0.033 Sum_probs=57.9
Q ss_pred cccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 25 LETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 25 ~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.+..+|+|++||.||.-+||+||+|++|.+++|+.||+|+ ||||..|++.. ...-|+.+|||
T Consensus 38 Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSK-------GFaFLcYEDQR----STILAVDN~NG 99 (219)
T KOG0126|consen 38 IYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSK-------GFAFLCYEDQR----STILAVDNLNG 99 (219)
T ss_pred EEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCccc-------ceEEEEecCcc----ceEEEEeccCC
Confidence 4778999999999999999999999999999999999999 99999999988 66678888888
No 107
>smart00361 RRM_1 RNA recognition motif.
Probab=98.70 E-value=2e-08 Score=69.58 Aligned_cols=51 Identities=8% Similarity=-0.052 Sum_probs=44.2
Q ss_pred HHHHHHHhh----ccCCccEEE-ccccCCC--CCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 36 VQKLVDMFT----KLNPLAKEF-FPSYYHQ--HTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 36 ~~~L~~~F~----~~G~i~~i~-i~~~~~~--~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
+++|+++|+ +||+|.++. ++.++.+ +++| |||||+|.+.+ +|.+|+..++|
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~r-------G~~fV~f~~~~----dA~~A~~~l~g 59 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKR-------GNVYITFERSE----DAARAIVDLNG 59 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCc-------EEEEEEECCHH----HHHHHHHHhCC
Confidence 578888888 999999995 6666655 7888 99999999999 88899999987
No 108
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.67 E-value=2e-07 Score=86.56 Aligned_cols=153 Identities=15% Similarity=0.120 Sum_probs=111.2
Q ss_pred CcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC---CCc
Q 024698 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ---GRK 100 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~---g~~ 100 (264)
..+.-+++.-+++.+++|+-+.||++..-.+..+..+|.++ ||||.+|.++. ....|+..+|| |..
T Consensus 291 ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~sk-------g~af~ey~dps----vtd~A~agLnGm~lgd~ 359 (500)
T KOG0120|consen 291 KIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSK-------GFAFCEYCDPS----VTDQAIAGLNGMQLGDK 359 (500)
T ss_pred hhhhccCcCccCHHHHHHHHHhcccchhheeeccccccccc-------ceeeeeeeCCc----chhhhhcccchhhhcCc
Confidence 56788899999999999999999999999999999988888 99999999999 66677777776 322
Q ss_pred ------------CCCCcchhcc--c----------CCCCCCEEEEcCCCCCCCHH-------------HHHHHhhcCCCe
Q 024698 101 ------------RLSGRAFRAQ--R----------EDSVRRTVYVSDIDQNITEE-------------RLAGLFSSCGQV 143 (264)
Q Consensus 101 ------------~~~~~~~~~~--~----------~~~~~~~lfV~nLp~~~te~-------------~L~~~F~~~G~i 143 (264)
........++ . .......|-..| -+|++ +++.-+++||.|
T Consensus 360 ~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n---~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v 436 (500)
T KOG0120|consen 360 KLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTN---VVTPDELKDDEEYEEILEDVRTECAKFGAV 436 (500)
T ss_pred eeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhh---cCCHHHhcchHHHHHHHHHHHHHhcccCce
Confidence 0000000000 0 000111122222 23333 334456799999
Q ss_pred eEEEEecC-CC----CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeC
Q 024698 144 VDCRVCGD-PH----SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 144 ~~v~i~~d-~~----~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~ 190 (264)
..|.+.++ .. ...|..||+|.+.+++++|+ .|+|..|.||.+...+.
T Consensus 437 ~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYy 489 (500)
T KOG0120|consen 437 RSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYY 489 (500)
T ss_pred eEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEec
Confidence 99999877 33 25689999999999999999 89999999999888763
No 109
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.67 E-value=5.7e-08 Score=79.37 Aligned_cols=77 Identities=23% Similarity=0.336 Sum_probs=68.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcC-CCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSC-GQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~-G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~ 190 (264)
...-+||..+|..+-+.++..+|.++ |.+..+++.+++. +++|||||+|++++.|.-|- .||+..+.++.|.|...
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 34459999999999999999999988 7888889988876 48999999999999999999 79999999999998864
Q ss_pred C
Q 024698 191 K 191 (264)
Q Consensus 191 ~ 191 (264)
.
T Consensus 128 p 128 (214)
T KOG4208|consen 128 P 128 (214)
T ss_pred C
Confidence 3
No 110
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.67 E-value=2.1e-08 Score=85.71 Aligned_cols=60 Identities=7% Similarity=-0.007 Sum_probs=52.8
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.+..+.||++.+|+++|+++|+.||+|.+|+|+++.. ++ |||||+|.+++ +|..|+. +++
T Consensus 5 rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~-------GfAFVtF~d~e----aAe~All-LnG 64 (260)
T PLN03120 5 RTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RS-------QIAYVTFKDPQ----GAETALL-LSG 64 (260)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CC-------CEEEEEeCcHH----HHHHHHH-hcC
Confidence 4578899999999999999999999999999998863 35 99999999999 7778884 665
No 111
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.66 E-value=1.4e-07 Score=83.56 Aligned_cols=156 Identities=13% Similarity=0.070 Sum_probs=108.1
Q ss_pred cccccccchhcHHHHHHHhhcc----CCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccCCCc
Q 024698 25 LETKKSESEFTVQKLVDMFTKL----NPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRK 100 (264)
Q Consensus 25 ~~~~~~~~~~t~~~L~~~F~~~----G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~g~~ 100 (264)
..-+.|+|+.|+.++.++|..- |....|-+++..++ + .+|=|||.|..+++|+ .|.+..+..-| ++
T Consensus 164 vRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdg-r-------pTGdAFvlfa~ee~aq-~aL~khrq~iG-qR 233 (508)
T KOG1365|consen 164 VRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDG-R-------PTGDAFVLFACEEDAQ-FALRKHRQNIG-QR 233 (508)
T ss_pred EEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCC-C-------cccceEEEecCHHHHH-HHHHHHHHHHh-HH
Confidence 3567799999999999999732 23445666555443 3 3499999999999666 44333333222 11
Q ss_pred -----------------CC------C---C------cchhcccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCC-eeE--
Q 024698 101 -----------------RL------S---G------RAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQ-VVD-- 145 (264)
Q Consensus 101 -----------------~~------~---~------~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~-- 145 (264)
+. . . +.... ........|-+++||+..+.++|.++|..|.. |..
T Consensus 234 YIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~-p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~g 312 (508)
T KOG1365|consen 234 YIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLV-PPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQG 312 (508)
T ss_pred HHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccC-CCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccce
Confidence 00 0 0 00000 01112456899999999999999999998863 333
Q ss_pred EEEecCCC-CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 146 CRVCGDPH-SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 146 v~i~~d~~-~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
|.++.+.. .+.|-|||+|.+.|.|..|. +.+.+..++|.|.|-+++
T Consensus 313 VHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 313 VHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred eEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 67766655 68899999999999999999 777777789999998753
No 112
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.65 E-value=2.8e-08 Score=83.76 Aligned_cols=61 Identities=10% Similarity=-0.046 Sum_probs=52.8
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
+.+..+.||.+++|+++|+++|+.||+|.+|+|+++. +++ |||||+|.+++ .+..|+ .++|
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~-------gfAfVtF~d~~----aaetAl-lLnG 65 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYA-------CTAYVTFKDAY----ALETAV-LLSG 65 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---Ccc-------eEEEEEECCHH----HHHHHH-hcCC
Confidence 3467899999999999999999999999999999984 445 89999999999 776776 5665
No 113
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.65 E-value=7e-07 Score=78.19 Aligned_cols=155 Identities=14% Similarity=0.080 Sum_probs=107.6
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccE--------EEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHh
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAK--------EFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRN 93 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~--------i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~ 93 (264)
|.+.++.+|+-++|.+++.++|++||-|.. |++-++.. |+.+ |=|.+.|...+ ...-|+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lK-------GDaLc~y~K~E----SVeLA~~ 201 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLK-------GDALCCYIKRE----SVELAIK 201 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCcc-------CceEEEeeccc----HHHHHHH
Confidence 345688999999999999999999997743 45555544 4666 88888888888 4445555
Q ss_pred hccC----C--------------CcCCCCc----------------------chh-cccCCCCCCEEEEcCCCC----CC
Q 024698 94 NFNQ----G--------------RKRLSGR----------------------AFR-AQREDSVRRTVYVSDIDQ----NI 128 (264)
Q Consensus 94 ~~~~----g--------------~~~~~~~----------------------~~~-~~~~~~~~~~lfV~nLp~----~~ 128 (264)
.|++ | ....++. ... ........++|.+.|+=. ..
T Consensus 202 ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~ 281 (382)
T KOG1548|consen 202 ILDEDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEK 281 (382)
T ss_pred HhCcccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhcc
Confidence 5544 1 1100000 000 001112356788888742 33
Q ss_pred C-------HHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeC
Q 024698 129 T-------EERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 129 t-------e~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~ 190 (264)
+ .++|++-.++||.|..|.|. |+ ++.|.+-|.|.+.++|..|+ .|+|..|.||.|.-..+
T Consensus 282 ~~~l~~dlkedl~eec~K~G~v~~vvv~-d~-hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~ 349 (382)
T KOG1548|consen 282 NPDLLNDLKEDLTEECEKFGQVRKVVVY-DR-HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIW 349 (382)
T ss_pred CHHHHHHHHHHHHHHHHHhCCcceEEEe-cc-CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEe
Confidence 3 24556667899999999774 22 37799999999999999999 79999999999998875
No 114
>smart00362 RRM_2 RNA recognition motif.
Probab=98.63 E-value=6.3e-08 Score=65.66 Aligned_cols=59 Identities=17% Similarity=0.221 Sum_probs=51.9
Q ss_pred ccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 26 ETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 26 ~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
...+++..+++++|+++|++||+|..+.+..+. +.++ |+|||+|.+.+ .|.+++..+++
T Consensus 3 ~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~-------~~~~v~f~~~~----~a~~a~~~~~~ 61 (72)
T smart00362 3 FVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSK-------GFAFVEFESEE----DAEKAIEALNG 61 (72)
T ss_pred EEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCC-------ceEEEEeCCHH----HHHHHHHHhCC
Confidence 467889999999999999999999999999877 4667 99999999999 77788877764
No 115
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.62 E-value=2.9e-07 Score=81.50 Aligned_cols=204 Identities=15% Similarity=0.110 Sum_probs=127.6
Q ss_pred ccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccCCCc-----
Q 024698 26 ETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRK----- 100 (264)
Q Consensus 26 ~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~g~~----- 100 (264)
..+.+++..++.++-.+|.-..-..--+.......++.. |.+-|.|.+.+.-+ -|.+..+...+++.
T Consensus 64 RaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRn-------ge~lvrf~d~e~Rd-lalkRhkhh~g~ryievYk 135 (508)
T KOG1365|consen 64 RARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRN-------GEALVRFVDPEGRD-LALKRHKHHMGTRYIEVYK 135 (508)
T ss_pred EecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccc-------cceEEEecCchhhh-hhhHhhhhhccCCceeeec
Confidence 456678888888998888865322222222222233444 89999999977444 45555444444332
Q ss_pred -------CCCCcchhc-cc-CC-CCCCEEEEcCCCCCCCHHHHHHHhhcC----CCeeEEEEecCCC-CCceEEEEEecC
Q 024698 101 -------RLSGRAFRA-QR-ED-SVRRTVYVSDIDQNITEERLAGLFSSC----GQVVDCRVCGDPH-SVLRFAFVEFAD 165 (264)
Q Consensus 101 -------~~~~~~~~~-~~-~~-~~~~~lfV~nLp~~~te~~L~~~F~~~----G~i~~v~i~~d~~-~~~g~afV~f~~ 165 (264)
++.+-.... .. .+ ...--|-.++||+++|+.++.++|.+- |....|-++..+. ...|=|||.|..
T Consensus 136 a~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ 215 (508)
T KOG1365|consen 136 ATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFAC 215 (508)
T ss_pred cCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecC
Confidence 111110000 00 01 012236678999999999999999732 3445666665544 588999999999
Q ss_pred HHHHHHHHHhCCceeCCeeEEEeeCCCC-------------CCC-CCCCCC---CCChhhhcCCCCeEEEcCCCCCCCHH
Q 024698 166 EHGARAALNLGGTMLGYYPVRVLPSKTA-------------ILP-VNPTFL---PRSEDEREMCSRTVYCTNIDKKVPQA 228 (264)
Q Consensus 166 ~e~a~~Al~ln~~~~~g~~i~V~~~~~~-------------~~~-~~~~~~---~~~~~~~~~~~~~i~v~nL~~~~te~ 228 (264)
+++|+.|+.-|...++-|.|.+-.|... ..+ ..+... |+..-.......+|.+++||.+.+.+
T Consensus 216 ee~aq~aL~khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvE 295 (508)
T KOG1365|consen 216 EEDAQFALRKHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVE 295 (508)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHH
Confidence 9999999977777788888777654211 111 011111 22222222346789999999999999
Q ss_pred HHHHHHhhc
Q 024698 229 EVKQFFEAA 237 (264)
Q Consensus 229 ~L~~~F~~~ 237 (264)
||.++|..|
T Consensus 296 dIL~FlgdF 304 (508)
T KOG1365|consen 296 DILDFLGDF 304 (508)
T ss_pred HHHHHHHHH
Confidence 999999999
No 116
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.62 E-value=3.6e-06 Score=74.47 Aligned_cols=210 Identities=16% Similarity=0.112 Sum_probs=136.1
Q ss_pred ccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHH-Hhhcc-CCCcCCC
Q 024698 26 ETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRR-RNNFN-QGRKRLS 103 (264)
Q Consensus 26 ~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a-~~~~~-~g~~~~~ 103 (264)
-++++-..+++.+|.+..+.||+|.-+..+..+ +-+.|+|++.+.|.....-+ .+..+ +|...+-
T Consensus 35 hvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~-------------r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~ 101 (494)
T KOG1456|consen 35 HVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK-------------RQALVEFEDIEGAKNCVNFAADNQIYIAGQQALF 101 (494)
T ss_pred EEeccccccchhHHHHHHhcCCceEEEEecccc-------------ceeeeeeccccchhhheehhccCcccccCchhhc
Confidence 456677889999999999999999888877543 45889999888443111111 11111 1222111
Q ss_pred -----CcchhcccCCC-CCCEEE--EcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-H
Q 024698 104 -----GRAFRAQREDS-VRRTVY--VSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-N 174 (264)
Q Consensus 104 -----~~~~~~~~~~~-~~~~lf--V~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ 174 (264)
....+.-.+.. ..+-|. |-|--+.+|-|-|..+....|+|..|.|.+... --|.|+|++.+.|++|. .
T Consensus 102 NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkng---VQAmVEFdsv~~AqrAk~a 178 (494)
T KOG1456|consen 102 NYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKNG---VQAMVEFDSVEVAQRAKAA 178 (494)
T ss_pred ccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEeccc---eeeEEeechhHHHHHHHhh
Confidence 11111111111 222333 345457899999999999999999998876533 37999999999999999 8
Q ss_pred hCCcee-CC-eeEEEeeCCCCCCC--------------CC-----CC---CCCCC-------------------------
Q 024698 175 LGGTML-GY-YPVRVLPSKTAILP--------------VN-----PT---FLPRS------------------------- 205 (264)
Q Consensus 175 ln~~~~-~g-~~i~V~~~~~~~~~--------------~~-----~~---~~~~~------------------------- 205 (264)
|||..| .| +.|+|..+++.... .. +. +.++.
T Consensus 179 lNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~ 258 (494)
T KOG1456|consen 179 LNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRH 258 (494)
T ss_pred cccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccC
Confidence 999998 33 67888776543100 00 00 00000
Q ss_pred --------------hh-------hhcCCCCeEEEcCCCC-CCCHHHHHHHHhhcCCCceEEEEeeccccc
Q 024698 206 --------------ED-------EREMCSRTVYCTNIDK-KVPQAEVKQFFEAACGGEVRTLPCMIILFY 253 (264)
Q Consensus 206 --------------~~-------~~~~~~~~i~v~nL~~-~~te~~L~~~F~~~~gG~I~~v~l~~d~~~ 253 (264)
.+ ....+...+.|.+|+. .++-+.|-.+|-.| |.|.+|+.++-..+
T Consensus 259 ~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClY--GNV~rvkFmkTk~g 326 (494)
T KOG1456|consen 259 GPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLY--GNVERVKFMKTKPG 326 (494)
T ss_pred CCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhc--CceeeEEEeecccc
Confidence 00 0011345788999987 56779999999999 89999999986544
No 117
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.59 E-value=9.1e-08 Score=69.93 Aligned_cols=60 Identities=10% Similarity=0.100 Sum_probs=53.1
Q ss_pred CcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
-+..+||++++|.+++.++|.+||+|..|++=..+.| | |-|||.|++.. +|.+|...+.|
T Consensus 20 iLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---r-------GTAFVVYedi~----dAk~A~dhlsg 79 (124)
T KOG0114|consen 20 ILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---R-------GTAFVVYEDIF----DAKKACDHLSG 79 (124)
T ss_pred eEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---C-------ceEEEEehHhh----hHHHHHHHhcc
Confidence 4789999999999999999999999999998666544 4 99999999999 88888877776
No 118
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.58 E-value=6.4e-08 Score=73.35 Aligned_cols=64 Identities=9% Similarity=0.014 Sum_probs=56.3
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.+..+.||.+-.||++|.+||+++|+|..|.|=-|+.+.+.= |||||+|.+.+ +|..|++-+++
T Consensus 37 ~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpC-------GFCFVeyy~~~----dA~~Alryisg 100 (153)
T KOG0121|consen 37 CTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPC-------GFCFVEYYSRD----DAEDALRYISG 100 (153)
T ss_pred ceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCcc-------ceEEEEEecch----hHHHHHHHhcc
Confidence 467899999999999999999999999999998888775545 99999999999 77788777776
No 119
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.57 E-value=2.1e-07 Score=87.97 Aligned_cols=90 Identities=21% Similarity=0.381 Sum_probs=75.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-----CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEe
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-----SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVL 188 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-----~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~ 188 (264)
..+.|||+||++.++++.|-..|+.||+|-.++|+.-+. ..+-||||-|.+..+|++|+ .|+|..+.+.++++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 345699999999999999999999999999999875443 24569999999999999999 899999999999999
Q ss_pred eCCCCCCCCCCCCCCC
Q 024698 189 PSKTAILPVNPTFLPR 204 (264)
Q Consensus 189 ~~~~~~~~~~~~~~~~ 204 (264)
|++.-..+..|-+.|+
T Consensus 253 Wgk~V~ip~~p~~ipp 268 (877)
T KOG0151|consen 253 WGKAVPIPNIPIYIPP 268 (877)
T ss_pred cccccccCCccccCCC
Confidence 9865444444445444
No 120
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.57 E-value=1.2e-07 Score=86.72 Aligned_cols=77 Identities=17% Similarity=0.285 Sum_probs=66.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeCCCC
Q 024698 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTA 193 (264)
Q Consensus 117 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~~~~ 193 (264)
.+|||+|||++++.++|+++|.+||.|+...|.... .+..+||||+|.+.+.+..|++-+...++++++.|...+..
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecccc
Confidence 459999999999999999999999999988876433 23338999999999999999977788899999999986543
No 121
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.52 E-value=1.8e-07 Score=90.54 Aligned_cols=151 Identities=15% Similarity=0.121 Sum_probs=117.5
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC-----
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ----- 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~----- 97 (264)
.+++.-|++.++++.+|+-.|..+|.|.+|.|.+...+ +.- -|+||.|.+.. .+.++...+.+
T Consensus 373 rTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~-~es-------a~~f~~~~n~d----mtp~ak~e~s~~~I~~ 440 (975)
T KOG0112|consen 373 RTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIK-TES-------AYAFVSLLNTD----MTPSAKFEESGPLIGN 440 (975)
T ss_pred hhhhhcCcccchhhhhhhhhhhhhccccccccccCCCC-ccc-------chhhhhhhccc----cCcccchhhcCCcccc
Confidence 46788999999999999999999999999999877543 222 79999999999 55565555543
Q ss_pred CCcCCCCcchhcccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhC
Q 024698 98 GRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLG 176 (264)
Q Consensus 98 g~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln 176 (264)
|..+ ....+......+.+|+++|++++....|...|..||.|..|.+ .+..-||||.|++...++.|+ .|-
T Consensus 441 g~~r----~glG~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy----~hgq~yayi~yes~~~aq~a~~~~r 512 (975)
T KOG0112|consen 441 GTHR----IGLGQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY----RHGQPYAYIQYESPPAAQAATHDMR 512 (975)
T ss_pred Cccc----ccccccccccceeeccCCCCCCChHHHHHHHhhccCcceeeec----ccCCcceeeecccCccchhhHHHHh
Confidence 2111 1111112334567999999999999999999999999998766 233459999999999999999 799
Q ss_pred CceeCC--eeEEEeeCCCC
Q 024698 177 GTMLGY--YPVRVLPSKTA 193 (264)
Q Consensus 177 ~~~~~g--~~i~V~~~~~~ 193 (264)
|..++| +.++|..+...
T Consensus 513 gap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 513 GAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred cCcCCCCCcccccccccCC
Confidence 999966 77888876543
No 122
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.52 E-value=3.9e-07 Score=77.61 Aligned_cols=77 Identities=23% Similarity=0.280 Sum_probs=70.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
...+|+|.|||+.+++++|+++|..||.+..+-+.+|+. .+.|.|-|.|...++|..|+ .+|+..+.|++|++....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 446799999999999999999999999999999988887 47899999999999999999 899999999999988753
No 123
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=98.51 E-value=1.2e-07 Score=75.53 Aligned_cols=58 Identities=16% Similarity=0.133 Sum_probs=51.5
Q ss_pred CcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
..++-||....++.||+.+|+.||+|.+|+|...+. |||||+|+++. +|..|+..|+|
T Consensus 12 kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP------------GfAFVEFed~R----DA~DAvr~LDG 69 (195)
T KOG0107|consen 12 KVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP------------GFAFVEFEDPR----DAEDAVRYLDG 69 (195)
T ss_pred eEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC------------CceEEeccCcc----cHHHHHhhcCC
Confidence 457889999999999999999999999999987332 99999999999 77788888887
No 124
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.51 E-value=2.1e-08 Score=96.35 Aligned_cols=172 Identities=16% Similarity=0.138 Sum_probs=121.6
Q ss_pred HHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC---CCcCCCCcchhcccCC-
Q 024698 38 KLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ---GRKRLSGRAFRAQRED- 113 (264)
Q Consensus 38 ~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~---g~~~~~~~~~~~~~~~- 113 (264)
..+.-|..+|.|..|+.+.....-... -+.++.+....++. .+..--.+ ++....+........+
T Consensus 588 ~~~~~~k~~~~vekv~~p~~g~k~h~q-------~~~~~~~s~~~~~e----sat~pa~~~~a~~~~av~~ad~~~~~~~ 656 (881)
T KOG0128|consen 588 IQRRQFKGEGNVEKVNGPKRGFKAHEQ-------PQQQKVQSKHGSAE----SATVPAGGALANRSAAVGLADAEEKEEN 656 (881)
T ss_pred hhHHHhhcccccccccCcccccccccc-------chhhhhhccccchh----hcccccccccCCccccCCCCCchhhhhc
Confidence 678899999999999998743331222 37888888888333 33221111 2221111111111111
Q ss_pred --------CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEe--cCCCCCceEEEEEecCHHHHHHHHHhCCceeCCe
Q 024698 114 --------SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVC--GDPHSVLRFAFVEFADEHGARAALNLGGTMLGYY 183 (264)
Q Consensus 114 --------~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~--~d~~~~~g~afV~f~~~e~a~~Al~ln~~~~~g~ 183 (264)
....++||+||++.+.+.+|...|..+|.+..+++. .+....+|.||+.|..++++.+|+.++...+.|
T Consensus 657 ~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g- 735 (881)
T KOG0128|consen 657 FKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG- 735 (881)
T ss_pred cCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh-
Confidence 012359999999999999999999999988777664 444468899999999999999999766555444
Q ss_pred eEEEeeCCCCCCCCCCCCCCCChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeecccc
Q 024698 184 PVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIILF 252 (264)
Q Consensus 184 ~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d~~ 252 (264)
...++|.|.|+..|.++|+.++..+ |.+++.+++...+
T Consensus 736 -----------------------------K~~v~i~g~pf~gt~e~~k~l~~~~--gn~~~~~~vt~r~ 773 (881)
T KOG0128|consen 736 -----------------------------KISVAISGPPFQGTKEELKSLASKT--GNVTSLRLVTVRA 773 (881)
T ss_pred -----------------------------hhhhheeCCCCCCchHHHHhhcccc--CCccccchhhhhc
Confidence 2347889999999999999999999 8999998876555
No 125
>PLN03213 repressor of silencing 3; Provisional
Probab=98.47 E-value=1.8e-07 Score=85.34 Aligned_cols=62 Identities=13% Similarity=0.141 Sum_probs=53.2
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
-..++.||.+++|+++|+.+|+.||.|.+|.||+. +| | |||||+|.+.+++ ++.+|+..|++
T Consensus 11 MRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--R-------GFAFVEMssddda--EeeKAISaLNG 72 (759)
T PLN03213 11 VRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--R-------SFAYIDFSPSSTN--SLTKLFSTYNG 72 (759)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--C-------ceEEEEecCCcHH--HHHHHHHHhcC
Confidence 36789999999999999999999999999999944 44 6 9999999998210 57889999988
No 126
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.46 E-value=1.2e-07 Score=87.61 Aligned_cols=130 Identities=15% Similarity=0.161 Sum_probs=87.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
....++|+|-|||..+++++|+.+|+.||+|+.|+.-.. .+|..||+|-|..+|+.|+ .|++..+.|+.|+.....
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~---~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~ 148 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN---KRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGA 148 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc---cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcc
Confidence 446789999999999999999999999999999766333 5589999999999999999 899999999998822211
Q ss_pred -CCCCCCC-CCCCCCChhhh---cC---CCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeec
Q 024698 192 -TAILPVN-PTFLPRSEDER---EM---CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMI 249 (264)
Q Consensus 192 -~~~~~~~-~~~~~~~~~~~---~~---~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~ 249 (264)
..+.... ..+...-.... .. ....+ ++.|+|+....-++..+.-+ |.+.. +...
T Consensus 149 ~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~-~g~l~P~~s~~~~~~~~~~~--~~~~~-~~~~ 210 (549)
T KOG4660|consen 149 RRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQL-FGMLSPTRSSILLEHISSVD--GSSPG-RETP 210 (549)
T ss_pred cccchhcccchhhhhccchhhcCCCCCCcCCcc-eeeeccchhhhhhhcchhcc--Ccccc-cccc
Confidence 0010000 00111100000 00 11122 33499988887777777666 67765 4433
No 127
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.42 E-value=2.7e-07 Score=84.93 Aligned_cols=64 Identities=13% Similarity=0.083 Sum_probs=61.4
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.+....|++|+.++++|.++|+..|+|.+++++.|+.+|+.| ||+|++|.+.+ +|.+|+..+|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~-------G~~f~~~~~~~----~~~~a~~~lNg 82 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPK-------GFGFCEFTDEE----TAERAIRNLNG 82 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcC-------ceeeEecCchh----hHHHHHHhcCC
Confidence 456899999999999999999999999999999999999999 99999999999 89999999997
No 128
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.42 E-value=3.2e-07 Score=60.43 Aligned_cols=43 Identities=19% Similarity=0.165 Sum_probs=37.5
Q ss_pred HHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 39 LVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 39 L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
|+++|++||+|.++.+.... + ++|||+|.+.+ +|..|+..+++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~-------~~a~V~f~~~~----~A~~a~~~l~~ 43 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----R-------GFAFVEFASVE----DAQKAIEQLNG 43 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----T-------TEEEEEESSHH----HHHHHHHHHTT
T ss_pred ChHHhCCcccEEEEEEEeCC-----C-------CEEEEEECCHH----HHHHHHHHhCC
Confidence 78999999999999998765 3 99999999999 88899988876
No 129
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.41 E-value=4.7e-07 Score=61.62 Aligned_cols=60 Identities=12% Similarity=0.112 Sum_probs=52.7
Q ss_pred ccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 26 ETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 26 ~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
...+++..+++++|+++|+.||+|..+.++.+..+ +.+ |+|||+|.+.+ +|..++..+++
T Consensus 3 ~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~-------~~~~v~f~s~~----~a~~a~~~~~~ 62 (74)
T cd00590 3 FVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSK-------GFAFVEFEDEE----DAEKALEALNG 62 (74)
T ss_pred EEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-Ccc-------eEEEEEECCHH----HHHHHHHHhCC
Confidence 45688999999999999999999999999988766 556 99999999999 88888877765
No 130
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=3.2e-07 Score=75.71 Aligned_cols=65 Identities=17% Similarity=0.177 Sum_probs=61.1
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.+++++..|.-++|+.-|...|-.||.|.+|.+|.|..+.++| ||+||+|...| +|..|+..||.
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHR-------gFgFVefe~aE----DAaaAiDNMne 74 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHR-------GFGFVEFEEAE----DAAAAIDNMNE 74 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhccccc-------ceeEEEeeccc----hhHHHhhcCch
Confidence 4578889999999999999999999999999999999999999 99999999999 88899999987
No 131
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.29 E-value=6.7e-07 Score=68.48 Aligned_cols=61 Identities=10% Similarity=0.033 Sum_probs=55.7
Q ss_pred ccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 26 ETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 26 ~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
++-++--+.|++++.+.|..||+|.++.+-.|..+|-.+ ||+.|+|.+.+ +|+.|+..+|+
T Consensus 76 ~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~K-------GYaLvEYet~k----eAq~A~~~~Ng 136 (170)
T KOG0130|consen 76 FVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVK-------GYALVEYETLK----EAQAAIDALNG 136 (170)
T ss_pred EEeccCcchhHHHHHHHHhhcccccceeecccccccccc-------ceeeeehHhHH----HHHHHHHhccc
Confidence 444566788999999999999999999999999999999 99999999999 88899999987
No 132
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.23 E-value=1.1e-05 Score=59.31 Aligned_cols=76 Identities=21% Similarity=0.226 Sum_probs=61.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhc--CCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHH-HhCCceeC----CeeEE
Q 024698 116 RRTVYVSDIDQNITEERLAGLFSS--CGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAAL-NLGGTMLG----YYPVR 186 (264)
Q Consensus 116 ~~~lfV~nLp~~~te~~L~~~F~~--~G~i~~v~i~~d~~~--~~g~afV~f~~~e~a~~Al-~ln~~~~~----g~~i~ 186 (264)
++||.|.|+|...|.++|.+++.. .|...-+.++.|-.+ +.|||||.|.+++.+.+-. .++|..+. .+...
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 368999999999999999988874 467777888877663 7899999999999999888 79998874 35566
Q ss_pred EeeCC
Q 024698 187 VLPSK 191 (264)
Q Consensus 187 V~~~~ 191 (264)
|.+++
T Consensus 81 i~yAr 85 (97)
T PF04059_consen 81 ISYAR 85 (97)
T ss_pred EehhH
Confidence 66654
No 133
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.15 E-value=7.1e-06 Score=57.88 Aligned_cols=67 Identities=22% Similarity=0.267 Sum_probs=46.2
Q ss_pred CEEEEcCCCCCCCHHHHH----HHhhcCC-CeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeC
Q 024698 117 RTVYVSDIDQNITEERLA----GLFSSCG-QVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 117 ~~lfV~nLp~~~te~~L~----~~F~~~G-~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~ 190 (264)
..|+|.|||.+.+...++ .++..|| +|..| ..+-|+|.|.+.+.|.+|. +|+|..+.|++|.|...
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 359999999988886655 5666775 67666 2468999999999999999 89999999999999975
Q ss_pred C
Q 024698 191 K 191 (264)
Q Consensus 191 ~ 191 (264)
.
T Consensus 75 ~ 75 (90)
T PF11608_consen 75 P 75 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 134
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.04 E-value=5.1e-06 Score=68.10 Aligned_cols=61 Identities=8% Similarity=0.098 Sum_probs=50.1
Q ss_pred ccccccchhcHHHHHHHhhcc-CCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 26 ETKKSESEFTVQKLVDMFTKL-NPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 26 ~~~~~~~~~t~~~L~~~F~~~-G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.+..+++-+-+.++...|.++ |.+...++.+++.||.|+ |||||+|++.+ .|.-+...||+
T Consensus 53 ~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSK-------gYAFVEFEs~e----VA~IaAETMNN 114 (214)
T KOG4208|consen 53 YVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSK-------GYAFVEFESEE----VAKIAAETMNN 114 (214)
T ss_pred eecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcC-------ceEEEEeccHH----HHHHHHHHhhh
Confidence 344567788899999999999 788999999999999999 99999999999 54444444444
No 135
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.03 E-value=3.8e-06 Score=81.61 Aligned_cols=126 Identities=17% Similarity=0.279 Sum_probs=98.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~ 192 (264)
..+|||+|||+..+++.+|+..|..+|.|..|.|-.-+. +..-|+||.|.+...+..|. ++.+..|..-.+++.....
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~ 450 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQP 450 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccccc
Confidence 467899999999999999999999999999999854432 33459999999999999999 8888887655544443210
Q ss_pred CCCCCCCCCCCCChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeeccccceeeEEEE
Q 024698 193 AILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIILFYFHLFIYY 260 (264)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d~~~~~~~~~~ 260 (264)
.....+.+++++|.+......|...|..| |.|..|.+-.- -..++|.|
T Consensus 451 ----------------kst~ttr~~sgglg~w~p~~~l~r~fd~f--Gpir~Idy~hg--q~yayi~y 498 (975)
T KOG0112|consen 451 ----------------KSTPTTRLQSGGLGPWSPVSRLNREFDRF--GPIRIIDYRHG--QPYAYIQY 498 (975)
T ss_pred ----------------ccccceeeccCCCCCCChHHHHHHHhhcc--CcceeeecccC--Ccceeeec
Confidence 11146779999999999999999999999 99998666544 44466655
No 136
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.98 E-value=7.4e-06 Score=72.91 Aligned_cols=130 Identities=22% Similarity=0.327 Sum_probs=98.4
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCC-----CceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeCC
Q 024698 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS-----VLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 117 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~-----~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~~ 191 (264)
..|-|.||.+.+|.++++.+|.-.|+|.+++|..+... ....|||.|.+...+..|..|-...+-++.|.|-+.-
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 36899999999999999999999999999999875542 3469999999999999999999999999999987743
Q ss_pred CCCCCCC------------CCCCCC--------C---h-----------------h--hhcCCCCeEEEcCCCCCCCHHH
Q 024698 192 TAILPVN------------PTFLPR--------S---E-----------------D--EREMCSRTVYCTNIDKKVPQAE 229 (264)
Q Consensus 192 ~~~~~~~------------~~~~~~--------~---~-----------------~--~~~~~~~~i~v~nL~~~~te~~ 229 (264)
....|.. |..++. . . + .-+.-.++++|++|+..+...+
T Consensus 88 ~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e 167 (479)
T KOG4676|consen 88 DEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPE 167 (479)
T ss_pred CCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchh
Confidence 2221110 000000 0 0 0 0011236899999999999999
Q ss_pred HHHHHhhcCCCceEEEEee
Q 024698 230 VKQFFEAACGGEVRTLPCM 248 (264)
Q Consensus 230 L~~~F~~~~gG~I~~v~l~ 248 (264)
+-++|+.+ |+|......
T Consensus 168 ~~e~f~r~--Gev~ya~~a 184 (479)
T KOG4676|consen 168 SGESFERK--GEVSYAHTA 184 (479)
T ss_pred hhhhhhhc--chhhhhhhh
Confidence 99999999 898766554
No 137
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.93 E-value=1.1e-05 Score=70.86 Aligned_cols=131 Identities=21% Similarity=0.176 Sum_probs=94.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecC--CCCCceEEEEEecCHHHHHHHHHhCCc-eeCCeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD--PHSVLRFAFVEFADEHGARAALNLGGT-MLGYYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d--~~~~~g~afV~f~~~e~a~~Al~ln~~-~~~g~~i~V~~~~ 191 (264)
...++|++++...+.+.+...++..+|......+... ...++|++++.|...+.+..|+.+.+. ...++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 3567999999999999999999999998877766543 336889999999999999999977775 4445444433321
Q ss_pred CCCCCCCCCCCCCChh--hhcCCCCeEE-EcCCCCCCCHHHHHHHHhhcCCCceEEEEeeccccc
Q 024698 192 TAILPVNPTFLPRSED--EREMCSRTVY-CTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIILFY 253 (264)
Q Consensus 192 ~~~~~~~~~~~~~~~~--~~~~~~~~i~-v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d~~~ 253 (264)
.-. ..+.... .......+++ +++++..+++++|+..|... |.|..++++.+..+
T Consensus 167 ~~~------~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~--~~i~~~r~~~~~~s 223 (285)
T KOG4210|consen 167 RRG------LRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSS--GEITSVRLPTDEES 223 (285)
T ss_pred ccc------ccccchhcccccCccccceeecccccccchHHHhhhccCc--CcceeeccCCCCCc
Confidence 100 0000001 0011344555 99999999999999999887 79999999976443
No 138
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.72 E-value=1.9e-05 Score=71.00 Aligned_cols=108 Identities=20% Similarity=0.312 Sum_probs=83.3
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCce-eCCeeEEEeeCCCCCC
Q 024698 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTM-LGYYPVRVLPSKTAIL 195 (264)
Q Consensus 118 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~-~~g~~i~V~~~~~~~~ 195 (264)
.+|++||.+.++..+|+.+|..----..-.++ -..||+||...+...|.+|+ .++|+. +.|+++.|..+
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl----~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~s----- 73 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL----VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHS----- 73 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCccee----eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccch-----
Confidence 58999999999999999999854100011111 14589999999999999999 677754 78999988863
Q ss_pred CCCCCCCCCChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEe
Q 024698 196 PVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPC 247 (264)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l 247 (264)
.+++.+ .+.+-|.|+|+...|+-|..++.+| |.+..+..
T Consensus 74 ------v~kkqr-----srk~Qirnippql~wevld~Ll~qy--g~ve~~eq 112 (584)
T KOG2193|consen 74 ------VPKKQR-----SRKIQIRNIPPQLQWEVLDSLLAQY--GTVENCEQ 112 (584)
T ss_pred ------hhHHHH-----hhhhhHhcCCHHHHHHHHHHHHhcc--CCHhHhhh
Confidence 233333 4558899999999999999999999 89987654
No 139
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.61 E-value=0.00023 Score=53.21 Aligned_cols=67 Identities=19% Similarity=0.228 Sum_probs=40.8
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhC-----CceeCCeeEEEe
Q 024698 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLG-----GTMLGYYPVRVL 188 (264)
Q Consensus 118 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln-----~~~~~g~~i~V~ 188 (264)
-|.|.+++..++.++|++.|++||+|..|.+..... -|||.|.+++.|.+|+ .+. +..+.+..+.+.
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~----~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT----EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S----EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC----EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 478888999999999999999999999998855433 8999999999999999 432 334455555444
No 140
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.59 E-value=5.9e-05 Score=69.35 Aligned_cols=55 Identities=13% Similarity=0.091 Sum_probs=47.7
Q ss_pred CcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCccccc
Q 024698 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNF 85 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~ 85 (264)
...++||+.+.++.+|++.|++||+|....|.....+++.. +||||+|.+.++++
T Consensus 290 ~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~-------~fgFV~f~~~~~~~ 344 (419)
T KOG0116|consen 290 GIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNP-------CFGFVEFENAAAVQ 344 (419)
T ss_pred ceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcC-------ceEEEEEeecchhh
Confidence 45899999999999999999999999998888766554555 99999999999555
No 141
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.53 E-value=0.00026 Score=46.08 Aligned_cols=52 Identities=25% Similarity=0.409 Sum_probs=41.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH
Q 024698 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL 173 (264)
Q Consensus 117 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al 173 (264)
+.|-|.+.|++..+. +..+|.+||+|..+.+.. ..-+.||.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~----~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE----STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC----CCcEEEEEECCHHHHHhhC
Confidence 467888898776655 455899999999998852 2349999999999999985
No 142
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.43 E-value=0.00033 Score=61.58 Aligned_cols=72 Identities=18% Similarity=0.356 Sum_probs=58.7
Q ss_pred EEEcCCCCCCCHHH----H--HHHhhcCCCeeEEEEecCCC---CCceE--EEEEecCHHHHHHHH-HhCCceeCCeeEE
Q 024698 119 VYVSDIDQNITEER----L--AGLFSSCGQVVDCRVCGDPH---SVLRF--AFVEFADEHGARAAL-NLGGTMLGYYPVR 186 (264)
Q Consensus 119 lfV~nLp~~~te~~----L--~~~F~~~G~i~~v~i~~d~~---~~~g~--afV~f~~~e~a~~Al-~ln~~~~~g~~i~ 186 (264)
+||-+||+.+..++ | .++|++||.|..|.+-+... +-.+. .||+|.+.|+|.+|| +.+|..++||.|+
T Consensus 117 vYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lk 196 (480)
T COG5175 117 VYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLK 196 (480)
T ss_pred eEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEe
Confidence 89999999888777 2 37999999999987754331 11233 499999999999999 8999999999999
Q ss_pred EeeC
Q 024698 187 VLPS 190 (264)
Q Consensus 187 V~~~ 190 (264)
..+.
T Consensus 197 atYG 200 (480)
T COG5175 197 ATYG 200 (480)
T ss_pred eecC
Confidence 9874
No 143
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=9.3e-05 Score=65.33 Aligned_cols=63 Identities=10% Similarity=-0.032 Sum_probs=55.1
Q ss_pred CcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
-+++=.|+.-.|.++|.-+||.||.|.+|.|++|..+|-+- .||||+|.+.+ .+.+|.=.|.+
T Consensus 241 VLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsL-------qyaFiEFen~e----scE~AyFKMdN 303 (479)
T KOG0415|consen 241 VLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSL-------QYAFIEFENKE----SCEQAYFKMDN 303 (479)
T ss_pred eEEEEecCCcccccchhhHHhhcccceeeeEEecccccchh-------heeeeeecchh----hHHHHHhhhcc
Confidence 35666788888999999999999999999999999999998 99999999999 77677655554
No 144
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.41 E-value=0.00013 Score=64.60 Aligned_cols=76 Identities=21% Similarity=0.305 Sum_probs=66.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCee--------EEEEecCCCC--CceEEEEEecCHHHHHHHH-HhCCceeCCe
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVV--------DCRVCGDPHS--VLRFAFVEFADEHGARAAL-NLGGTMLGYY 183 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~d~~~--~~g~afV~f~~~e~a~~Al-~ln~~~~~g~ 183 (264)
..-+|||-+||..+++++|.++|.+||.|. .|.|-+|+.+ +||=|.|+|.++..|+.|+ .+++..+.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 456799999999999999999999999873 2445556553 8899999999999999999 7999999999
Q ss_pred eEEEeeC
Q 024698 184 PVRVLPS 190 (264)
Q Consensus 184 ~i~V~~~ 190 (264)
.|+|..+
T Consensus 145 ~ikvs~a 151 (351)
T KOG1995|consen 145 TIKVSLA 151 (351)
T ss_pred Cchhhhh
Confidence 9999876
No 145
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.41 E-value=0.00023 Score=66.48 Aligned_cols=63 Identities=10% Similarity=0.082 Sum_probs=54.1
Q ss_pred CcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
|+-+..|....-..+|+.||++||.|+-.+|+++..+.-.| +|+||++.+.+ +|-+++..++.
T Consensus 407 NlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaR-------CYGfVTMSts~----eAtkCI~hLHr 469 (940)
T KOG4661|consen 407 NLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGAR-------CYGFVTMSTSA----EATKCIEHLHR 469 (940)
T ss_pred ceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcc-------eeEEEEecchH----HHHHHHHHhhh
Confidence 44455577788899999999999999999999988776667 99999999999 88899988865
No 146
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.38 E-value=0.00017 Score=67.07 Aligned_cols=140 Identities=14% Similarity=0.135 Sum_probs=87.2
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC----C
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ----G 98 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~----g 98 (264)
.++-+-|++..+++++|+.+|+.||+|..|+.-+ ..+ |.+||+|-+.. +|++|.+.+++ |
T Consensus 76 ~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~-------~~~~v~FyDvR----~A~~Alk~l~~~~~~~ 139 (549)
T KOG4660|consen 76 GTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKR-------GIVFVEFYDVR----DAERALKALNRREIAG 139 (549)
T ss_pred ceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccC-------ceEEEEEeehH----hHHHHHHHHHHHHhhh
Confidence 4678889999999999999999999999966543 334 99999999999 66666666655 2
Q ss_pred CcCCC------------Ccchhcc--------cCCC-CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCce
Q 024698 99 RKRLS------------GRAFRAQ--------REDS-VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLR 157 (264)
Q Consensus 99 ~~~~~------------~~~~~~~--------~~~~-~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g 157 (264)
++... ...-+.. .... ..-++| +.|++..+..-++..++-+|.+.. +...... .
T Consensus 140 ~~~k~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~-g~l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~---h 214 (549)
T KOG4660|consen 140 KRIKRPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLF-GMLSPTRSSILLEHISSVDGSSPG-RETPLLN---H 214 (549)
T ss_pred hhhcCCCcccccchhcccchhhhhccchhhcCCCCCCcCCcce-eeeccchhhhhhhcchhccCcccc-ccccchh---h
Confidence 22000 0000000 0011 122243 349998888777888888888765 3321111 1
Q ss_pred EEEEEecCHHHHHHHH-HhCCceeCCee
Q 024698 158 FAFVEFADEHGARAAL-NLGGTMLGYYP 184 (264)
Q Consensus 158 ~afV~f~~~e~a~~Al-~ln~~~~~g~~ 184 (264)
--+++|.+..++..+. .+ |..+.+..
T Consensus 215 q~~~~~~~~~s~a~~~~~~-G~~~s~~~ 241 (549)
T KOG4660|consen 215 QRFVEFADNRSYAFSEPRG-GFLISNSS 241 (549)
T ss_pred hhhhhhccccchhhcccCC-ceecCCCC
Confidence 3456666666665554 33 55555544
No 147
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.36 E-value=0.00024 Score=60.19 Aligned_cols=61 Identities=11% Similarity=0.043 Sum_probs=56.0
Q ss_pred ccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 26 ETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 26 ~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
+-..+.++++.+-|-..|.+|-.-...++++++.+++++ ||+||.|.+.+ ++.+|+++++|
T Consensus 194 fcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSk-------gygfVSf~~pa----d~~rAmrem~g 254 (290)
T KOG0226|consen 194 FCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSK-------GYGFVSFRDPA----DYVRAMREMNG 254 (290)
T ss_pred ecccccccccHHHHHHHHHhccchhhccccccccccccc-------cceeeeecCHH----HHHHHHHhhcc
Confidence 444466889999999999999999999999999999999 99999999999 88899999998
No 148
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.28 E-value=0.0022 Score=47.41 Aligned_cols=74 Identities=22% Similarity=0.256 Sum_probs=49.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEE-EecC-------CC-CCceEEEEEecCHHHHHHHHHhCCceeCCeeEE
Q 024698 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCR-VCGD-------PH-SVLRFAFVEFADEHGARAALNLGGTMLGYYPVR 186 (264)
Q Consensus 116 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~-i~~d-------~~-~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~ 186 (264)
...|.|=+.|+..+ ..+.++|++||+|.+.. +.++ +. .....-.|+|+++.+|.+||+.||..+.|..|-
T Consensus 6 ~~wVtVFGfp~~~~-~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPSAS-NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GGGH-HHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHHHH-HHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 34578888998844 56677899999997774 1111 11 133489999999999999999999999886544
Q ss_pred -EeeC
Q 024698 187 -VLPS 190 (264)
Q Consensus 187 -V~~~ 190 (264)
|.+.
T Consensus 85 GV~~~ 89 (100)
T PF05172_consen 85 GVKPC 89 (100)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 5553
No 149
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.28 E-value=0.00022 Score=62.79 Aligned_cols=53 Identities=11% Similarity=-0.070 Sum_probs=45.4
Q ss_pred CCCCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCccccc
Q 024698 20 NKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNF 85 (264)
Q Consensus 20 ~~~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~ 85 (264)
..-.++..+++...+++.+|+++|.+||+|.++++.... |.|||+|.+.+.|+
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~-------------~CAFv~ftTR~aAE 278 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK-------------GCAFVTFTTREAAE 278 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc-------------ccceeeehhhHHHH
Confidence 334578999999999999999999999999999987432 89999999999444
No 150
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.26 E-value=0.00049 Score=50.53 Aligned_cols=61 Identities=15% Similarity=0.202 Sum_probs=50.8
Q ss_pred ccccccchhcHHHHHHHhhcc--CCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 26 ETKKSESEFTVQKLVDMFTKL--NPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 26 ~~~~~~~~~t~~~L~~~F~~~--G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
-.+|+++.+|+++|.+++... |..-=+-+|.|..++.+. |||||.|.+++ .|.+-...++|
T Consensus 5 MirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~-------GYAFVNf~~~~----~~~~F~~~f~g 67 (97)
T PF04059_consen 5 MIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNL-------GYAFVNFTSPQ----AAIRFYKAFNG 67 (97)
T ss_pred EEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCce-------EEEEEEcCCHH----HHHHHHHHHcC
Confidence 468999999999999998775 455557888888887777 99999999999 88787787775
No 151
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.15 E-value=0.0014 Score=62.69 Aligned_cols=74 Identities=18% Similarity=0.197 Sum_probs=63.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCe-eEEEEecCC-CCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEee
Q 024698 116 RRTVYVSDIDQNITEERLAGLFSSCGQV-VDCRVCGDP-HSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLP 189 (264)
Q Consensus 116 ~~~lfV~nLp~~~te~~L~~~F~~~G~i-~~v~i~~d~-~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~ 189 (264)
.+.|-+.|+|++++-+||.++|..|-.+ .+|++.++. +.+.|-|.|-|++.++|.+|. .++++.|..|.|++..
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3468999999999999999999999755 455565444 468899999999999999999 8999999999998763
No 152
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.13 E-value=0.00042 Score=62.67 Aligned_cols=66 Identities=26% Similarity=0.455 Sum_probs=55.0
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecC---CCC------------CceEEEEEecCHHHHHHHHHh
Q 024698 111 REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD---PHS------------VLRFAFVEFADEHGARAALNL 175 (264)
Q Consensus 111 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d---~~~------------~~g~afV~f~~~e~a~~Al~l 175 (264)
.++...++|.+-|||.+-.-+-|.++|+.+|.|..|+|+.- +.. .+-+|+|+|...+.|.+|.++
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 34457899999999999888999999999999999999754 211 245999999999999999953
Q ss_pred C
Q 024698 176 G 176 (264)
Q Consensus 176 n 176 (264)
.
T Consensus 306 ~ 306 (484)
T KOG1855|consen 306 L 306 (484)
T ss_pred h
Confidence 3
No 153
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.09 E-value=0.0023 Score=50.22 Aligned_cols=54 Identities=31% Similarity=0.432 Sum_probs=46.2
Q ss_pred HHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeCC
Q 024698 132 RLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 132 ~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~~ 191 (264)
+|.+.|..||++.-+|++.+ .-+|+|.+-++|.+|+.++|..+.|+.|+|....
T Consensus 52 ~ll~~~~~~GevvLvRfv~~------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKt 105 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKT 105 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE--
T ss_pred HHHHHHHhCCceEEEEEeCC------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCC
Confidence 66778899999999998665 4789999999999999999999999999999754
No 154
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.08 E-value=0.00023 Score=63.58 Aligned_cols=150 Identities=11% Similarity=0.053 Sum_probs=101.2
Q ss_pred cccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHH---------------
Q 024698 25 LETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNR--------------- 89 (264)
Q Consensus 25 ~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~--------------- 89 (264)
..+-|+...+|.++++.||..+|.|.++++.......+ .+.-...|||.|.+...+. .|+
T Consensus 10 Iqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~----~pv~sRtcyVkf~d~~sv~-vaQhLtntvfvdraliv~ 84 (479)
T KOG4676|consen 10 IQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSK----IPVISRTCYVKFLDSQSVT-VAQHLTNTVFVDRALIVR 84 (479)
T ss_pred eeecccCchhhHHHHHHHHhhccccccccccCCCCCcc----CcceeeeEEEeccCCccee-HHhhhccceeeeeeEEEE
Confidence 45567888999999999999999999999887554311 1122379999999988555 222
Q ss_pred ----------HHHhhccC-----CCcCCCC-----cc--------------------hhcccCCCCCCEEEEcCCCCCCC
Q 024698 90 ----------RRRNNFNQ-----GRKRLSG-----RA--------------------FRAQREDSVRRTVYVSDIDQNIT 129 (264)
Q Consensus 90 ----------~a~~~~~~-----g~~~~~~-----~~--------------------~~~~~~~~~~~~lfV~nLp~~~t 129 (264)
.|...+.. |.....+ .. ..+...+...++++|++|+..+-
T Consensus 85 p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~ 164 (479)
T KOG4676|consen 85 PYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAI 164 (479)
T ss_pred ecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhc
Confidence 12222211 0000000 00 00111112347899999999999
Q ss_pred HHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhCCceeC
Q 024698 130 EERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLG 181 (264)
Q Consensus 130 e~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al~ln~~~~~ 181 (264)
..++.+.|..+|+|...++.-.. ..-+|-++|....+...|++++|..+.
T Consensus 165 l~e~~e~f~r~Gev~ya~~ask~--~s~~c~~sf~~qts~~halr~~gre~k 214 (479)
T KOG4676|consen 165 LPESGESFERKGEVSYAHTASKS--RSSSCSHSFRKQTSSKHALRSHGRERK 214 (479)
T ss_pred chhhhhhhhhcchhhhhhhhccC--CCcchhhhHhhhhhHHHHHHhcchhhh
Confidence 99999999999999877664322 234677999999999999988888776
No 155
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.07 E-value=0.00069 Score=57.92 Aligned_cols=62 Identities=11% Similarity=0.087 Sum_probs=56.7
Q ss_pred CcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.....||++.+++++|+++|..||++..+-+-+++.+ ++. |.|-|.|...+ +|.+++..|++
T Consensus 85 ~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G-~s~-------Gta~v~~~r~~----DA~~avk~~~g 146 (243)
T KOG0533|consen 85 KVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAG-RSL-------GTADVSFNRRD----DAERAVKKYNG 146 (243)
T ss_pred eeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCC-CCC-------ccceeeecchH----hHHHHHHHhcC
Confidence 5688999999999999999999999998888888775 888 99999999999 88899999987
No 156
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=96.94 E-value=0.00061 Score=58.09 Aligned_cols=64 Identities=11% Similarity=0.009 Sum_probs=57.0
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccCC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQG 98 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~g 98 (264)
......|+++..|-+++...|+.||.|..+.++.+...++++ ||+||+|.+.+ ....++. ++++
T Consensus 102 ~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k-------~~~yvef~~~~----~~~~ay~-l~gs 165 (231)
T KOG4209|consen 102 PSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPK-------GFAYVEFSSYE----LVEEAYK-LDGS 165 (231)
T ss_pred ceEEEeccccccccchhhheeeccCCccceeeeccccCCCcc-------eeEEEecccHh----hhHHHhh-cCCc
Confidence 366888999999999999999999999999999999988889 99999999999 6667776 6663
No 157
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=96.85 E-value=0.0011 Score=64.12 Aligned_cols=57 Identities=11% Similarity=0.099 Sum_probs=48.5
Q ss_pred CcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
++.++.++..++|.||..+|+.||+|.+|.++. .| |+|||.+.... +|.+|+..|..
T Consensus 423 TLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R-------~cAfI~M~~Rq----dA~kalqkl~n 479 (894)
T KOG0132|consen 423 TLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PR-------GCAFIKMVRRQ----DAEKALQKLSN 479 (894)
T ss_pred eeeeccccchhhHHHHHHHHHhcccceeEeecc------CC-------ceeEEEEeehh----HHHHHHHHHhc
Confidence 567888999999999999999999999999874 34 99999999999 66666666654
No 158
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.84 E-value=0.0038 Score=58.50 Aligned_cols=75 Identities=24% Similarity=0.257 Sum_probs=60.3
Q ss_pred CCCEEEEcCCCCC--CCH----HHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHH-HhCCcee-CCeeE
Q 024698 115 VRRTVYVSDIDQN--ITE----ERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAAL-NLGGTML-GYYPV 185 (264)
Q Consensus 115 ~~~~lfV~nLp~~--~te----~~L~~~F~~~G~i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al-~ln~~~~-~g~~i 185 (264)
....|+|.|+|-- ..- .-|.++|+++|+|....++.+.. ..+||.|++|.+..+|..|+ .+||+.+ .++..
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 4567999999942 222 33567999999999999987776 58899999999999999999 8999998 45677
Q ss_pred EEee
Q 024698 186 RVLP 189 (264)
Q Consensus 186 ~V~~ 189 (264)
.|..
T Consensus 137 ~v~~ 140 (698)
T KOG2314|consen 137 FVRL 140 (698)
T ss_pred Eeeh
Confidence 7754
No 159
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.68 E-value=0.00017 Score=65.04 Aligned_cols=144 Identities=16% Similarity=0.240 Sum_probs=103.9
Q ss_pred CcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC-----C
Q 024698 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ-----G 98 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~-----g 98 (264)
.+...||....+..+|+.+|..- .++.... +-...||+||++.+.. .|.+++..+++ |
T Consensus 3 klyignL~p~~~psdl~svfg~a------k~~~~g~-------fl~k~gyafvd~pdq~----wa~kaie~~sgk~elqG 65 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDA------KIPGSGQ-------FLVKSGYAFVDCPDQQ----WANKAIETLSGKVELQG 65 (584)
T ss_pred cccccccCCCCChHHHHHHhccc------cCCCCcc-------eeeecceeeccCCchh----hhhhhHHhhchhhhhcC
Confidence 35667888889999999999864 2222111 1112399999999999 89999998887 3
Q ss_pred CcC-CCCcchhcccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEe-cCCCCCceEEEEEecCHHHHHHHH-Hh
Q 024698 99 RKR-LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVC-GDPHSVLRFAFVEFADEHGARAAL-NL 175 (264)
Q Consensus 99 ~~~-~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~-~d~~~~~g~afV~f~~~e~a~~Al-~l 175 (264)
++. ..-..... ..++.+-+.|+|+...++-|..+..+||.+..|..+ .|+.+ -.--|+|.+.+.+..|| ++
T Consensus 66 kr~e~~~sv~kk----qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et--avvnvty~~~~~~~~ai~kl 139 (584)
T KOG2193|consen 66 KRQEVEHSVPKK----QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET--AVVNVTYSAQQQHRQAIHKL 139 (584)
T ss_pred ceeeccchhhHH----HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH--HHHHHHHHHHHHHHHHHHhh
Confidence 331 11111111 134568899999999999999999999999888653 33321 23346788999999999 89
Q ss_pred CCceeCCeeEEEeeC
Q 024698 176 GGTMLGYYPVRVLPS 190 (264)
Q Consensus 176 n~~~~~g~~i~V~~~ 190 (264)
+|.-+....++|.+-
T Consensus 140 ~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 140 NGPQLENQHLKVGYI 154 (584)
T ss_pred cchHhhhhhhhcccC
Confidence 999999999998763
No 160
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.67 E-value=0.0039 Score=59.76 Aligned_cols=74 Identities=19% Similarity=0.102 Sum_probs=61.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeE-EEEecCCC-CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeC
Q 024698 117 RTVYVSDIDQNITEERLAGLFSSCGQVVD-CRVCGDPH-SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 117 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~-v~i~~d~~-~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~ 190 (264)
..|||..||..+++..+-+.|...-.|++ |.|.+-+. .-++-|||.|..++++..|. .-..+.+..|.|+|...
T Consensus 435 ~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 435 GALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred ceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 35999999999999999999998777776 66655554 35689999999999988888 56667778889999864
No 161
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.59 E-value=0.0011 Score=56.25 Aligned_cols=68 Identities=25% Similarity=0.286 Sum_probs=57.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCC----------Cc----eEEEEEecCHHHHHHHH-HhCCceeC
Q 024698 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS----------VL----RFAFVEFADEHGARAAL-NLGGTMLG 181 (264)
Q Consensus 117 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~----------~~----g~afV~f~~~e~a~~Al-~ln~~~~~ 181 (264)
--||+++||+.+...-|+++|++||.|-.|.+...... ++ .-|.|+|.+...|..+- .||+..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 35999999999999999999999999999988644321 11 25789999999999888 89999999
Q ss_pred Cee
Q 024698 182 YYP 184 (264)
Q Consensus 182 g~~ 184 (264)
|+.
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 875
No 162
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.45 E-value=0.0097 Score=51.62 Aligned_cols=60 Identities=23% Similarity=0.223 Sum_probs=50.3
Q ss_pred HHHHHHHhhcCCCeeEEEEecCCCCC---ceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEee
Q 024698 130 EERLAGLFSSCGQVVDCRVCGDPHSV---LRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLP 189 (264)
Q Consensus 130 e~~L~~~F~~~G~i~~v~i~~d~~~~---~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~ 189 (264)
++++++..++||.|..|.|..++..+ ----||+|...++|.+|+ .|||..|+||.++-..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 35677788999999999887776532 236899999999999999 9999999999988765
No 163
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.35 E-value=0.0033 Score=55.64 Aligned_cols=74 Identities=16% Similarity=0.223 Sum_probs=61.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCC--CeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEee
Q 024698 116 RRTVYVSDIDQNITEERLAGLFSSCG--QVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLP 189 (264)
Q Consensus 116 ~~~lfV~nLp~~~te~~L~~~F~~~G--~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~ 189 (264)
...+|||||-|.+|+++|.+.....| .+.++++..++. .+||||+|...+..+..+-+ -|-.+.+.|..-.|..
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 45699999999999999999888777 567777776665 48999999999888888888 5888899987666654
No 164
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.20 E-value=0.0021 Score=54.59 Aligned_cols=58 Identities=22% Similarity=0.361 Sum_probs=48.8
Q ss_pred HHHHhh-cCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeC
Q 024698 133 LAGLFS-SCGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 133 L~~~F~-~~G~i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~ 190 (264)
+...|+ +||+|+.+.+..+.. .-.|-+||.|...++|++|+ .||+..+.|++|....+
T Consensus 85 ~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 85 VFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 334445 899999998876655 46789999999999999999 89999999999988764
No 165
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.12 E-value=0.006 Score=57.18 Aligned_cols=51 Identities=12% Similarity=0.197 Sum_probs=45.9
Q ss_pred cHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 35 TVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 35 t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
-+.-|.++|+++|+|+...+|.+..+| ++ ||.|++|.+.. +|..|++.++|
T Consensus 77 lk~vl~kvfsk~gk~vn~~~P~~e~gg-tk-------G~lf~E~~~~~----~A~~aVK~l~G 127 (698)
T KOG2314|consen 77 LKKVLTKVFSKAGKIVNMYYPIDEEGG-TK-------GYLFVEYASMR----DAKKAVKSLNG 127 (698)
T ss_pred HHHHHHHHHHhhccccceeeccCccCC-ee-------eEEEEEecChh----hHHHHHHhccc
Confidence 345678899999999999999998884 88 99999999999 88899999998
No 166
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.95 E-value=0.037 Score=39.24 Aligned_cols=52 Identities=21% Similarity=0.333 Sum_probs=38.7
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhC
Q 024698 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLG 176 (264)
Q Consensus 118 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln 176 (264)
-.+|+ .|......||.++|+.||.|. |.++.|. -|||...+.+.+..++ .++
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT-----SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT-----SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT-----EEEEEECCCHHHHHHHHHHT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC-----cEEEEeecHHHHHHHHHHhc
Confidence 35555 999999999999999999994 5555543 5999999999999988 454
No 167
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=95.85 E-value=0.011 Score=44.07 Aligned_cols=52 Identities=6% Similarity=-0.042 Sum_probs=29.3
Q ss_pred cccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhh
Q 024698 29 KSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNN 94 (264)
Q Consensus 29 ~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~ 94 (264)
++..+++.++|++.|++||+|.-|.+.... .-|||.|.++++|+ .|..+...
T Consensus 8 g~~~~~~re~iK~~f~~~g~V~yVD~~~G~-------------~~g~VRf~~~~~A~-~a~~~~~~ 59 (105)
T PF08777_consen 8 GLGEPTSREDIKEAFSQFGEVAYVDFSRGD-------------TEGYVRFKTPEAAQ-KALEKLKE 59 (105)
T ss_dssp E--SS--HHHHHHHT-SS--EEEEE--TT--------------SEEEEEESS---HH-HHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHhcCCcceEEecCCC-------------CEEEEEECCcchHH-HHHHHHHh
Confidence 466778899999999999999988886533 56999999999544 33333333
No 168
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=95.83 E-value=0.013 Score=38.11 Aligned_cols=39 Identities=10% Similarity=0.271 Sum_probs=31.6
Q ss_pred HHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHH
Q 024698 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRR 91 (264)
Q Consensus 36 ~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a 91 (264)
.+++...|.+||+|.++.++... -+.||.|.+.. +|++|
T Consensus 14 ~~~vl~~F~~fGeI~~~~~~~~~-------------~~~~l~y~~~~----~ae~A 52 (53)
T PF14605_consen 14 AEEVLEHFASFGEIVDIYVPEST-------------NWMYLKYKSRK----DAEKA 52 (53)
T ss_pred HHHHHHHHHhcCCEEEEEcCCCC-------------cEEEEEECCHH----HHHhh
Confidence 35788899999999999887221 68999999999 66665
No 169
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=95.51 E-value=0.02 Score=55.22 Aligned_cols=65 Identities=14% Similarity=0.103 Sum_probs=55.3
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCC---CCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQ---HTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~---~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
..|.+.-|++..++++.|-..|..||+|.+++++..+.- .+.+ -++||-|.+.. +|.+|+..++|
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r-------~cgfvafmnR~----D~era~k~lqg 241 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRER-------NCGFVAFMNRA----DAERALKELQG 241 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhcccc-------ccceeeehhhh----hHHHHHHHhcc
Confidence 347899999999999999999999999999988766532 2345 89999999999 88889888887
No 170
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=95.37 E-value=0.017 Score=41.55 Aligned_cols=74 Identities=23% Similarity=0.218 Sum_probs=48.8
Q ss_pred EEEEecCHHHHHHHHHhCC--ceeCCeeEEEeeCCCCCCCCCCCCCCCChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhh
Q 024698 159 AFVEFADEHGARAALNLGG--TMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEA 236 (264)
Q Consensus 159 afV~f~~~e~a~~Al~ln~--~~~~g~~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~ 236 (264)
|.|+|.+++-|++.+++.. ..+.++.+.|..+.-... ...+-+-....+.++|.|.|||..+++++|++.++=
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~-----~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~LeI 75 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLG-----HLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLEI 75 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecC-----CceEEEEEEcccCCEEEEeCCCCCCChhhheeeEEE
Confidence 6899999999999995444 445677666664311100 000001111336789999999999999999988764
Q ss_pred c
Q 024698 237 A 237 (264)
Q Consensus 237 ~ 237 (264)
+
T Consensus 76 h 76 (88)
T PF07292_consen 76 H 76 (88)
T ss_pred E
Confidence 4
No 171
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.34 E-value=0.097 Score=35.07 Aligned_cols=51 Identities=24% Similarity=0.325 Sum_probs=42.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcC---CCeeEEEEecCCCCCceEEEEEecCHHHHHHHH
Q 024698 117 RTVYVSDIDQNITEERLAGLFSSC---GQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL 173 (264)
Q Consensus 117 ~~lfV~nLp~~~te~~L~~~F~~~---G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al 173 (264)
.+|+|.++. +++.++|+.+|..| .....|.++.|.. |-|.|.+.+.|.+||
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDtS-----cNvvf~d~~~A~~AL 59 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDTS-----CNVVFKDEETAARAL 59 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCCc-----EEEEECCHHHHHHHH
Confidence 469999996 57888999999988 2355788888765 889999999999998
No 172
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.14 E-value=0.24 Score=37.29 Aligned_cols=64 Identities=11% Similarity=0.102 Sum_probs=50.6
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCC-CeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCC
Q 024698 119 VYVSDIDQNITEERLAGLFSSCG-QVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGY 182 (264)
Q Consensus 119 lfV~nLp~~~te~~L~~~F~~~G-~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g 182 (264)
+-+...|+.++-++|..+.+.+- .|..++|++|...++-.+.+.|.+.+.|..-. .+||+.+..
T Consensus 16 ~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 16 CCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 44455556666677776666554 67889999998878889999999999999999 899999865
No 173
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.89 E-value=0.014 Score=53.65 Aligned_cols=71 Identities=17% Similarity=0.150 Sum_probs=57.5
Q ss_pred EEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeCCC
Q 024698 118 TVYVSDIDQN-ITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 118 ~lfV~nLp~~-~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~~~ 192 (264)
.|-+.-.|+. -|..+|..+|.+||+|..|.+-... -.|.|+|.+..+|-+|....+..|++|.|+|.|-.+
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~----~~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS----LHAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCch----hhheeeeeccccccchhccccceecCceeEEEEecC
Confidence 3444445544 3558899999999999999885443 379999999999999999999999999999999654
No 174
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.55 E-value=0.073 Score=43.55 Aligned_cols=68 Identities=13% Similarity=0.091 Sum_probs=45.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhc-CCCe---eEEEEecCCC--C--CceEEEEEecCHHHHHHHH-HhCCceeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSS-CGQV---VDCRVCGDPH--S--VLRFAFVEFADEHGARAAL-NLGGTMLGY 182 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~-~G~i---~~v~i~~d~~--~--~~g~afV~f~~~e~a~~Al-~ln~~~~~g 182 (264)
...+|.|++||+++|++++.+.++. ++.- ..+.-..... . ...-|||.|.+.+++..-. .++|+.|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 3457999999999999999988776 6655 3343222222 1 2358999999999988888 799998843
No 175
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.54 E-value=0.28 Score=45.24 Aligned_cols=68 Identities=16% Similarity=0.255 Sum_probs=60.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcC-CCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSC-GQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGY 182 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~-G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g 182 (264)
.+..|.|--+|-.+|-.||-.+...+ -.|.++++++|...++-...|.|.+.++|..-. ++||..|..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 37789999999999999999988854 578999999987777789999999999999999 899999865
No 176
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=94.17 E-value=0.082 Score=45.16 Aligned_cols=65 Identities=17% Similarity=0.066 Sum_probs=55.5
Q ss_pred HHHHHH-HhCCceeCCeeEEEeeCCCCCCCCCCCCCCCChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEE
Q 024698 168 GARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLP 246 (264)
Q Consensus 168 ~a~~Al-~ln~~~~~g~~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~ 246 (264)
.|..|. +|++....|+.++|..+. . ..|||.||..-+.-+.|.+-|+.| |+|....
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~--------------------~-a~l~V~nl~~~~sndll~~~f~~f--g~~e~av 62 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAM--------------------H-AELYVVNLMQGASNDLLEQAFRRF--GPIERAV 62 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeec--------------------c-ceEEEEecchhhhhHHHHHhhhhc--Cccchhe
Confidence 456666 799999999999999642 3 679999999999999999999999 9999999
Q ss_pred eecccccee
Q 024698 247 CMIILFYFH 255 (264)
Q Consensus 247 l~~d~~~~~ 255 (264)
+..|.+.-+
T Consensus 63 ~~vD~r~k~ 71 (275)
T KOG0115|consen 63 AKVDDRGKP 71 (275)
T ss_pred eeecccccc
Confidence 888866543
No 177
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=94.13 E-value=0.052 Score=46.36 Aligned_cols=73 Identities=29% Similarity=0.337 Sum_probs=57.5
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCC-CCCceEEEEEecCHHHHHHHH-HhC--C--ceeCCeeEEEee
Q 024698 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP-HSVLRFAFVEFADEHGARAAL-NLG--G--TMLGYYPVRVLP 189 (264)
Q Consensus 117 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~-~~~~g~afV~f~~~e~a~~Al-~ln--~--~~~~g~~i~V~~ 189 (264)
..|||.||+.-++.+.+..-|+.||+|..-.++.|. ..+.+-++|.|...-.+.+|+ ..+ + .+..+++.-|.+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 569999999999999999999999999766555444 467889999999999999999 442 2 223456666655
No 178
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.26 E-value=0.28 Score=42.97 Aligned_cols=66 Identities=24% Similarity=0.352 Sum_probs=49.7
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhCCceeCCee-EEEee
Q 024698 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYP-VRVLP 189 (264)
Q Consensus 119 lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~-i~V~~ 189 (264)
|-|-+.|+.-. .-|..+|++||+|.......+ --+-+|.|.+.-+|.+||..||+.|.|.. |-|.+
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~n----gNwMhirYssr~~A~KALskng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSN----GNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKP 266 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhCeeeeeecCCC----CceEEEEecchhHHHHhhhhcCeeeccceEEeeee
Confidence 55557777654 446678999999988755321 23899999999999999988999998754 44554
No 179
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.08 E-value=0.42 Score=37.44 Aligned_cols=70 Identities=20% Similarity=0.180 Sum_probs=51.9
Q ss_pred CCCEEEEcCCCCCCCH-H---HHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEee
Q 024698 115 VRRTVYVSDIDQNITE-E---RLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLP 189 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te-~---~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~ 189 (264)
.-.||.|.=|..++.. + .+...++.||+|.+|.+.. +--|.|.|++..+|-+|+ .+.. ...|..+.+.|
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-----rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-----RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-----CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 4567888766655433 3 3445667899999998743 336999999999999999 5554 67788889988
Q ss_pred C
Q 024698 190 S 190 (264)
Q Consensus 190 ~ 190 (264)
-
T Consensus 159 q 159 (166)
T PF15023_consen 159 Q 159 (166)
T ss_pred c
Confidence 4
No 180
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.07 E-value=0.071 Score=47.22 Aligned_cols=75 Identities=16% Similarity=0.289 Sum_probs=59.1
Q ss_pred CEEEEcCCCCCCCHHHHH---HHhhcCCCeeEEEEecCCC--C---CceEEEEEecCHHHHHHHH-HhCCceeCCeeEEE
Q 024698 117 RTVYVSDIDQNITEERLA---GLFSSCGQVVDCRVCGDPH--S---VLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRV 187 (264)
Q Consensus 117 ~~lfV~nLp~~~te~~L~---~~F~~~G~i~~v~i~~d~~--~---~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V 187 (264)
.-+||-+|+.....+.+. +.|.+||.|..|.+..+.. . ...-+||+|...++|..|| ..+|....|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 448899999776655543 4899999999999887762 1 2235999999999999999 89999999998777
Q ss_pred eeCC
Q 024698 188 LPSK 191 (264)
Q Consensus 188 ~~~~ 191 (264)
....
T Consensus 158 ~~gt 161 (327)
T KOG2068|consen 158 SLGT 161 (327)
T ss_pred hhCC
Confidence 6543
No 181
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=91.99 E-value=0.12 Score=47.29 Aligned_cols=71 Identities=10% Similarity=0.110 Sum_probs=53.0
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEcccc---CC---CCCccccccCCCceEEeccCCcccccchHHHHHhhcc
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSY---YH---QHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFN 96 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~---~~---~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~ 96 (264)
......||+-+=.-+.|.++|+.+|.|..|+|... .. ....+...-.+.-+|+|+|...+ .|.+|...++
T Consensus 232 rtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~----~A~KA~e~~~ 307 (484)
T KOG1855|consen 232 RTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVE----AARKARELLN 307 (484)
T ss_pred ceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhH----HHHHHHHhhc
Confidence 45567788877788999999999999999999765 22 22222223345688999999999 8888877775
Q ss_pred C
Q 024698 97 Q 97 (264)
Q Consensus 97 ~ 97 (264)
.
T Consensus 308 ~ 308 (484)
T KOG1855|consen 308 P 308 (484)
T ss_pred h
Confidence 4
No 182
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=91.15 E-value=0.34 Score=35.76 Aligned_cols=56 Identities=7% Similarity=0.086 Sum_probs=33.3
Q ss_pred cHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhh
Q 024698 35 TVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNN 94 (264)
Q Consensus 35 t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~ 94 (264)
....+.+.|++||+|++..-......+-..........+..|.|.++. +|++|++.
T Consensus 18 ~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~----~A~rAL~~ 73 (100)
T PF05172_consen 18 ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPL----SAQRALQK 73 (100)
T ss_dssp GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHH----HHHHHHTT
T ss_pred HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHH----HHHHHHHh
Confidence 345789999999999888622211100000011123389999999999 88888754
No 183
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=91.10 E-value=0.42 Score=34.01 Aligned_cols=41 Identities=17% Similarity=0.328 Sum_probs=23.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhc---CCCceEEEEeeccccceee
Q 024698 214 RTVYCTNIDKKVPQAEVKQFFEAA---CGGEVRTLPCMIILFYFHL 256 (264)
Q Consensus 214 ~~i~v~nL~~~~te~~L~~~F~~~---~gG~I~~v~l~~d~~~~~~ 256 (264)
..|+|.|||...+-..++.-+.+. |||.|.+| ...-|.++|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~~~tAilrF 46 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--SGGTAILRF 46 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----TT-EEEEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--eCCEEEEEe
Confidence 468999999998887776665544 99999877 355555554
No 184
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=90.64 E-value=0.19 Score=47.79 Aligned_cols=70 Identities=14% Similarity=0.145 Sum_probs=55.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhh-cCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCcee---CCeeEEEee
Q 024698 116 RRTVYVSDIDQNITEERLAGLFS-SCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTML---GYYPVRVLP 189 (264)
Q Consensus 116 ~~~lfV~nLp~~~te~~L~~~F~-~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~---~g~~i~V~~ 189 (264)
+..|+|.||-.-.|.-+|+.+++ .+|.|... ..|+ -+..|||.|.+.++|.+-. .|||..+ +++.|.+.+
T Consensus 444 SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDk--IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 444 SNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDK--IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred cceEeeecccccchHHHHHHHHhhccCchHHH--HHHH--hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 44599999999999999999999 56666665 2333 3458999999999999988 7999877 456676655
No 185
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=90.26 E-value=0.42 Score=40.95 Aligned_cols=37 Identities=19% Similarity=0.225 Sum_probs=34.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeecc
Q 024698 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMII 250 (264)
Q Consensus 212 ~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d 250 (264)
....||+++||+..+-..|+++|++| |.|-.|.|.+.
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~y--GeVGRvylqpE 109 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQY--GEVGRVYLQPE 109 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhc--cccceEEecch
Confidence 56789999999999999999999999 99999999875
No 186
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=89.33 E-value=0.15 Score=43.62 Aligned_cols=55 Identities=5% Similarity=-0.062 Sum_probs=42.7
Q ss_pred cchhcHHHHHHHhh-ccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 31 ESEFTVQKLVDMFT-KLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 31 ~~~~t~~~L~~~F~-~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
-++-.-++|...|+ +||+|.++.|-.+... ..+ |-+||.|...+ +|++|...+|+
T Consensus 77 ~~defyEd~f~E~~~kygEiee~~Vc~Nl~~-hl~-------GNVYV~f~~Ee----~ae~a~~~lnn 132 (260)
T KOG2202|consen 77 HEDEFYEDVFTELEDKYGEIEELNVCDNLGD-HLV-------GNVYVKFRSEE----DAEAALEDLNN 132 (260)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhcccch-hhh-------hhhhhhcccHH----HHHHHHHHHcC
Confidence 34444566777777 9999999877665543 566 99999999999 88899998876
No 187
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=89.05 E-value=1.5 Score=36.08 Aligned_cols=58 Identities=26% Similarity=0.200 Sum_probs=43.8
Q ss_pred CHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhC--CceeCCeeEEEeeC
Q 024698 129 TEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLG--GTMLGYYPVRVLPS 190 (264)
Q Consensus 129 te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln--~~~~~g~~i~V~~~ 190 (264)
..+.|+++|..|+.+.....++. -+-..|.|.+.+.|.+|. .++ +..+.|..++|...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE--
T ss_pred hHHHHHHHHHhcCCceEEEEcCC----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEc
Confidence 34789999999999888766543 346889999999999999 788 99999999999875
No 188
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=88.98 E-value=0.45 Score=37.34 Aligned_cols=107 Identities=13% Similarity=-0.011 Sum_probs=70.7
Q ss_pred CCHHHHHHHh----hcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeCCCCCCCCCCCCCC
Q 024698 128 ITEERLAGLF----SSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTAILPVNPTFLP 203 (264)
Q Consensus 128 ~te~~L~~~F----~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~~~~~~~~~~~~~~ 203 (264)
.+-..|...+ ...|.+.-..+ ..++..+.|.+.+++.+++......++|..+.+...++...+
T Consensus 29 ~~~~~l~~~l~~~W~~~~~~~i~~l------~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~~------- 95 (153)
T PF14111_consen 29 ISLSALEQELAKIWKLKGGVKIRDL------GDNLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFNP------- 95 (153)
T ss_pred CCHHHHHHHHHHHhCCCCcEEEEEe------CCCeEEEEEEeccceeEEEecccccccccchhhhhhcccccc-------
Confidence 4455555544 44455544444 457999999999999999977777888888888875432211
Q ss_pred CChhhhcCCCCeEEEcCCCCC-CCHHHHHHHHhhcCCCceEEEEeecc
Q 024698 204 RSEDEREMCSRTVYCTNIDKK-VPQAEVKQFFEAACGGEVRTLPCMII 250 (264)
Q Consensus 204 ~~~~~~~~~~~~i~v~nL~~~-~te~~L~~~F~~~~gG~I~~v~l~~d 250 (264)
.... ......=|.|.|||.. .+++-++.+-+.. |.+..+.....
T Consensus 96 ~~~~-~~~~~vWVri~glP~~~~~~~~~~~i~~~i--G~~i~vD~~t~ 140 (153)
T PF14111_consen 96 SEVK-FEHIPVWVRIYGLPLHLWSEEILKAIGSKI--GEPIEVDENTL 140 (153)
T ss_pred cccc-eeccchhhhhccCCHHHhhhHHHHHHHHhc--CCeEEEEcCCC
Confidence 1100 0112233667899986 6778888888887 79988776543
No 189
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=87.90 E-value=1.2 Score=42.19 Aligned_cols=68 Identities=18% Similarity=0.329 Sum_probs=53.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHhh--cCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH---HhCCceeCCeeEEEee
Q 024698 117 RTVYVSDIDQNITEERLAGLFS--SCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL---NLGGTMLGYYPVRVLP 189 (264)
Q Consensus 117 ~~lfV~nLp~~~te~~L~~~F~--~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al---~ln~~~~~g~~i~V~~ 189 (264)
+-+.++.||..+..|+++.+|. .|-++.+|.+..+.. =||+|++..+|+.|. +-.-++|.|++|.-..
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-----WyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-----WYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-----eEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 3367789999999999999998 488999999866654 689999999999987 2444567777765543
No 190
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=86.45 E-value=3.7 Score=28.28 Aligned_cols=57 Identities=23% Similarity=0.333 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHhhcCC-----CeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEee
Q 024698 126 QNITEERLAGLFSSCG-----QVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLP 189 (264)
Q Consensus 126 ~~~te~~L~~~F~~~G-----~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~ 189 (264)
..++..+|..++..-+ .|-.+++.. .|+||+-.. +.+..++ .|++..+.|++++|..
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S------S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEE
Confidence 5678888888888664 456677732 389998854 4677888 8999999999999975
No 191
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=86.06 E-value=1.7 Score=30.88 Aligned_cols=48 Identities=8% Similarity=0.087 Sum_probs=34.6
Q ss_pred cchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 31 ESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 31 ~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
+.+-...||.++|+.||.| .|.++.+ .-|||.....+ ++..+.+.+..
T Consensus 17 PkeWK~~DI~qlFspfG~I-~VsWi~d--------------TSAfV~l~~r~----~~~~v~~~~~~ 64 (87)
T PF08675_consen 17 PKEWKTSDIYQLFSPFGQI-YVSWIND--------------TSAFVALHNRD----QAKVVMNTLKK 64 (87)
T ss_dssp -TT--HHHHHHHCCCCCCE-EEEEECT--------------TEEEEEECCCH----HHHHHHHHHTT
T ss_pred chHhhhhhHHHHhccCCcE-EEEEEcC--------------CcEEEEeecHH----HHHHHHHHhcc
Confidence 4455678999999999998 4555543 67999999999 66666666543
No 192
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=85.40 E-value=0.97 Score=40.30 Aligned_cols=49 Identities=6% Similarity=-0.013 Sum_probs=34.9
Q ss_pred HHHHhhccCCccEEEccccCCCCCccccccCCCce--EEeccCCcccccchHHHHHhhccC
Q 024698 39 LVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNF--ADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 39 L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf--~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
=.++|.+||.|..|.+-+......+ ..+. .||+|.+.+ +|.+++...+|
T Consensus 137 ~~eyFGQyGkI~KIvvNkkt~s~ns------t~~h~gvYITy~~ke----dAarcIa~vDg 187 (480)
T COG5175 137 RHEYFGQYGKIKKIVVNKKTSSLNS------TASHAGVYITYSTKE----DAARCIAEVDG 187 (480)
T ss_pred chhhhhhccceeEEEeccccccccc------ccccceEEEEecchH----HHHHHHHHhcc
Confidence 3689999999999887654421111 1133 399999999 78888888877
No 193
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=83.95 E-value=0.69 Score=45.89 Aligned_cols=70 Identities=31% Similarity=0.320 Sum_probs=59.9
Q ss_pred EEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCcee--CCeeEEEeeCCC
Q 024698 119 VYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTML--GYYPVRVLPSKT 192 (264)
Q Consensus 119 lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~--~g~~i~V~~~~~ 192 (264)
.++.|.+-..+...|..++++||.|.+.+.+++-. .|.|+|.+.+.|..|+ .++|+++ -|-+.+|..++.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N----~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN----MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc----chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 55666777888889999999999999998877766 8999999999999999 7999886 577888888764
No 194
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=81.86 E-value=0.84 Score=44.04 Aligned_cols=68 Identities=22% Similarity=0.225 Sum_probs=58.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEee
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLP 189 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~ 189 (264)
...++||+|+...+..+-++.+...||-|.++.... |||.+|..+.....|+ .+....++|..+.+..
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 456899999999999999999999999998774422 9999999999999999 6787788888777665
No 195
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=79.16 E-value=14 Score=25.04 Aligned_cols=55 Identities=16% Similarity=0.247 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEE
Q 024698 126 QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRV 187 (264)
Q Consensus 126 ~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V 187 (264)
..++-++++..+.+|+-. . |..|+. | =||.|.+.++|+++. ..+|..+.+..|.+
T Consensus 10 ~~~~v~d~K~~Lr~y~~~-~--I~~d~t---G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWD-R--IRDDRT---G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCCcc-e--EEecCC---E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 357789999999999643 2 333433 4 589999999999999 78998887776654
No 196
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=77.06 E-value=2.7 Score=37.02 Aligned_cols=43 Identities=14% Similarity=0.278 Sum_probs=34.6
Q ss_pred cHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhh
Q 024698 35 TVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNN 94 (264)
Q Consensus 35 t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~ 94 (264)
.-.-|..+|++||+|++.+.+ .++ .|-+|.|.+.- +|++|++.
T Consensus 209 ~~s~vL~~F~~cG~Vvkhv~~--~ng-----------NwMhirYssr~----~A~KALsk 251 (350)
T KOG4285|consen 209 QVSIVLNLFSRCGEVVKHVTP--SNG-----------NWMHIRYSSRT----HAQKALSK 251 (350)
T ss_pred chhHHHHHHHhhCeeeeeecC--CCC-----------ceEEEEecchh----HHHHhhhh
Confidence 456788999999999988776 222 69999999999 77777753
No 197
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=75.43 E-value=5.1 Score=36.02 Aligned_cols=67 Identities=7% Similarity=-0.012 Sum_probs=54.4
Q ss_pred CCCCCcccccccchhcHHHHHHHhhccCCccE--------EEccccCCCCCccccccCCCceEEeccCCcccccchHHHH
Q 024698 20 NKNNNLETKKSESEFTVQKLVDMFTKLNPLAK--------EFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRR 91 (264)
Q Consensus 20 ~~~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~--------i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a 91 (264)
..+.+..+-.++-..++.+|.+.|.++|.|.. |.+-+++.|++.+ |=|-|.|.+.. .|+.|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~K-------GeatvS~~D~~----~akaa 132 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPK-------GEATVSYEDPP----AAKAA 132 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcC-------CceeeeecChh----hhhhh
Confidence 33467888999999999999999999998853 4455555666666 99999999999 88888
Q ss_pred HhhccC
Q 024698 92 RNNFNQ 97 (264)
Q Consensus 92 ~~~~~~ 97 (264)
+..+++
T Consensus 133 i~~~ag 138 (351)
T KOG1995|consen 133 IEWFAG 138 (351)
T ss_pred hhhhcc
Confidence 888775
No 198
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=73.79 E-value=4.8 Score=35.35 Aligned_cols=52 Identities=8% Similarity=-0.075 Sum_probs=40.6
Q ss_pred HHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 36 ~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
++++.+-+++||.|..|.|--..+..-.+ .-=-||+|...+ +|.+|.-.+||
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~de------avRiFveF~r~e----~aiKA~VdlnG 351 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDE------AVRIFVEFERVE----SAIKAVVDLNG 351 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccch------hheeeeeeccHH----HHHHHHHhcCC
Confidence 56889999999999998776665432221 134899999999 99999999987
No 199
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=64.67 E-value=13 Score=24.87 Aligned_cols=43 Identities=9% Similarity=0.058 Sum_probs=33.4
Q ss_pred hhcHHHHHHHhhcc----CCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhh
Q 024698 33 EFTVQKLVDMFTKL----NPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNN 94 (264)
Q Consensus 33 ~~t~~~L~~~F~~~----G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~ 94 (264)
+++.++++..|..| ++ ..|.++-|. -|=|.|.+.+ .|.+|+..
T Consensus 15 ~lsT~dI~~y~~~y~~~~~~-~~IEWIdDt--------------ScNvvf~d~~----~A~~AL~~ 61 (62)
T PF10309_consen 15 ELSTDDIKAYFSEYFDEEGP-FRIEWIDDT--------------SCNVVFKDEE----TAARALVA 61 (62)
T ss_pred CCCHHHHHHHHHHhcccCCC-ceEEEecCC--------------cEEEEECCHH----HHHHHHHc
Confidence 58899999999999 54 467777653 4778999999 77777654
No 200
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=64.15 E-value=15 Score=28.93 Aligned_cols=54 Identities=7% Similarity=0.074 Sum_probs=41.6
Q ss_pred cccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccCC
Q 024698 27 TKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQG 98 (264)
Q Consensus 27 ~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~g 98 (264)
-||....-+.+.+..-.+.||+|.+|.+- |+ --|-|.|.+.. .|..|++.|..+
T Consensus 95 kknm~~~edl~sV~~~Ls~fGpI~SVT~c-----Gr---------qsavVvF~d~~----SAC~Av~Af~s~ 148 (166)
T PF15023_consen 95 KKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----GR---------QSAVVVFKDIT----SACKAVSAFQSR 148 (166)
T ss_pred hhcCChHHHHHHHHHHHHhcCCcceeeec-----CC---------ceEEEEehhhH----HHHHHHHhhcCC
Confidence 35555555667777778999999988753 23 56999999999 999999999763
No 201
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=63.94 E-value=6.3 Score=29.87 Aligned_cols=48 Identities=19% Similarity=0.282 Sum_probs=28.8
Q ss_pred CCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHH-HHHHHHhC
Q 024698 128 ITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHG-ARAALNLG 176 (264)
Q Consensus 128 ~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~-a~~Al~ln 176 (264)
.+.++|++.|+.|..++ ++.+.++....|++.|.|.+.-. -..|++|.
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l~ 77 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDWSGFKNAMRLE 77 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCChHHHHHHHHHH
Confidence 45688999999998875 55556666678999999987444 34454433
No 202
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=62.52 E-value=7.1 Score=28.06 Aligned_cols=25 Identities=36% Similarity=0.440 Sum_probs=21.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHh
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLF 137 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F 137 (264)
....++|-|.|||...++++|++..
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeE
Confidence 3467899999999999999998754
No 203
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=58.41 E-value=7.4 Score=35.03 Aligned_cols=52 Identities=12% Similarity=-0.097 Sum_probs=46.1
Q ss_pred CcccccccchhcHHHHHHHhhccC--CccEEEccccCCCCCccccccCCCceEEeccCCcc
Q 024698 24 NLETKKSESEFTVQKLVDMFTKLN--PLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAI 82 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~~G--~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~ 82 (264)
-.++.||-+..|.+||.+.....| .+.++++-.++.+|.++ |||.|...+..
T Consensus 82 ~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSK-------G~AL~~~~SdA 135 (498)
T KOG4849|consen 82 CCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSK-------GYALLVLNSDA 135 (498)
T ss_pred EEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCccc-------ceEEEEecchH
Confidence 347889999999999999999988 57888998888899999 99999998877
No 204
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=57.93 E-value=17 Score=31.95 Aligned_cols=75 Identities=11% Similarity=0.094 Sum_probs=55.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC---------CCceEEEEEecCHHHHHHHH-----HhCC--c
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH---------SVLRFAFVEFADEHGARAAL-----NLGG--T 178 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~---------~~~g~afV~f~~~e~a~~Al-----~ln~--~ 178 (264)
..|.|...|+..+++-..+-..|.+||+|++|.++.+.. +......+.|-+.+.+.--. +|+. .
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999987761 23467889999988874332 2221 3
Q ss_pred eeCCeeEEEee
Q 024698 179 MLGYYPVRVLP 189 (264)
Q Consensus 179 ~~~g~~i~V~~ 189 (264)
.++...|.|..
T Consensus 94 ~L~S~~L~lsF 104 (309)
T PF10567_consen 94 KLKSESLTLSF 104 (309)
T ss_pred hcCCcceeEEE
Confidence 34556666654
No 205
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=57.02 E-value=20 Score=31.50 Aligned_cols=46 Identities=9% Similarity=0.214 Sum_probs=35.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCe-eEEEEecCCCCCceEEEEEecCHH
Q 024698 118 TVYVSDIDQNITEERLAGLFSSCGQV-VDCRVCGDPHSVLRFAFVEFADEH 167 (264)
Q Consensus 118 ~lfV~nLp~~~te~~L~~~F~~~G~i-~~v~i~~d~~~~~g~afV~f~~~e 167 (264)
.|+++|||.++.-.+|+..+.+-|-+ .++.+ ..+.|-||++|-+..
T Consensus 332 di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw----kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 332 DIKLTNLSRDIRVKDLKSELRKRECTPMSISW----KGHFGKCFLHFGNRK 378 (396)
T ss_pred ceeeccCccccchHHHHHHHHhcCCCceeEee----ecCCcceeEecCCcc
Confidence 49999999999999999999877643 34444 236678999998754
No 206
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=54.47 E-value=22 Score=28.04 Aligned_cols=41 Identities=7% Similarity=-0.006 Sum_probs=31.8
Q ss_pred cHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhh
Q 024698 35 TVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNN 94 (264)
Q Consensus 35 t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~ 94 (264)
--.+|.+.|+.||++.-+|+.- +--.|+|.+.+ .|.+|++.
T Consensus 49 l~~~ll~~~~~~GevvLvRfv~---------------~~mwVTF~dg~----sALaals~ 89 (146)
T PF08952_consen 49 LMDELLQKFAQYGEVVLVRFVG---------------DTMWVTFRDGQ----SALAALSL 89 (146)
T ss_dssp HHHHHHHHHHCCS-ECEEEEET---------------TCEEEEESSCH----HHHHHHHG
T ss_pred HHHHHHHHHHhCCceEEEEEeC---------------CeEEEEECccH----HHHHHHcc
Confidence 3568999999999988887764 45899999999 77777653
No 207
>PF07625 DUF1586: Protein of unknown function (DUF1586); InterPro: IPR011479 This is a family of short hypothetical proteins found in Rhodopirellula baltica.
Probab=54.33 E-value=5.3 Score=20.52 Aligned_cols=13 Identities=46% Similarity=0.603 Sum_probs=10.4
Q ss_pred CcccCCCCcchhh
Q 024698 1 MAAVADMPGDAAA 13 (264)
Q Consensus 1 ~a~~~~~~~~~~~ 13 (264)
+|||.++||.+.|
T Consensus 5 lAaV~q~pT~anA 17 (22)
T PF07625_consen 5 LAAVSQTPTGANA 17 (22)
T ss_pred hhhhccCCCCcCc
Confidence 4889999988764
No 208
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=53.47 E-value=26 Score=23.42 Aligned_cols=20 Identities=15% Similarity=0.388 Sum_probs=15.8
Q ss_pred HHHHHHHhhccCCccEEEcc
Q 024698 36 VQKLVDMFTKLNPLAKEFFP 55 (264)
Q Consensus 36 ~~~L~~~F~~~G~i~~i~i~ 55 (264)
..+||+.|+..|+|.-+-+-
T Consensus 8 ~~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHHhcCcEEEEEEc
Confidence 36899999999999655443
No 209
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=46.45 E-value=13 Score=32.66 Aligned_cols=38 Identities=11% Similarity=0.165 Sum_probs=34.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeeccc
Q 024698 212 CSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIIL 251 (264)
Q Consensus 212 ~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d~ 251 (264)
..|.|.+.|+..+++-..+-.-|-+| |+|++|.++.+-
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~--~pIESiYL~~~~ 51 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKF--GPIESIYLIKSN 51 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhcc--CceeEEEEecCC
Confidence 46789999999999999999999999 999999999884
No 210
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=46.24 E-value=15 Score=21.65 Aligned_cols=17 Identities=12% Similarity=0.389 Sum_probs=10.7
Q ss_pred chhcHHHHHHHhhccCC
Q 024698 32 SEFTVQKLVDMFTKLNP 48 (264)
Q Consensus 32 ~~~t~~~L~~~F~~~G~ 48 (264)
-+.++++|++.|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 35789999999998753
No 211
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=45.13 E-value=10 Score=36.57 Aligned_cols=56 Identities=11% Similarity=0.080 Sum_probs=41.0
Q ss_pred cccccccchhcHHHHHHHhh-ccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 25 LETKKSESEFTVQKLVDMFT-KLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 25 ~~~~~~~~~~t~~~L~~~F~-~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
....||---+|...|++|.. ..|.|.+. |+ | +.+ -.|||.|.+.+ +|...+..|++
T Consensus 447 lhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-D----kIK-------ShCyV~yss~e----EA~atr~Alhn 503 (718)
T KOG2416|consen 447 LHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-D----KIK-------SHCYVSYSSVE----EAAATREALHN 503 (718)
T ss_pred EeeecccccchHHHHHHHHhhccCchHHH-HH-H----Hhh-------cceeEecccHH----HHHHHHHHHhc
Confidence 45667778889999999999 55666666 33 2 233 56999999999 66666666665
No 212
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.87 E-value=67 Score=29.71 Aligned_cols=56 Identities=21% Similarity=0.302 Sum_probs=44.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCe-eEEEEecCCCCCceEEEEEecCHHHHHHHHHh
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQV-VDCRVCGDPHSVLRFAFVEFADEHGARAALNL 175 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i-~~v~i~~d~~~~~g~afV~f~~~e~a~~Al~l 175 (264)
....|=|-++|.....+||...|+.|+.- -+|.++.|. .+|-.|.+...|..||.+
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-----halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-----HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-----eeEEeecchHHHHHHhhc
Confidence 34558899999888888899999999743 556666554 599999999999999965
No 213
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=42.41 E-value=61 Score=26.64 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=32.9
Q ss_pred HHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhcc
Q 024698 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFN 96 (264)
Q Consensus 36 ~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~ 96 (264)
.+.|+++|+.|+++......+.. +=.-|.|.+.+ .|.+++..++
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~sF-------------rRi~v~f~~~~----~A~~~r~~l~ 52 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKSF-------------RRIRVVFESPE----SAQRARQLLH 52 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETTT-------------TEEEEE-SSTT----HHHHHHHTST
T ss_pred HHHHHHHHHhcCCceEEEEcCCC-------------CEEEEEeCCHH----HHHHHHHHhc
Confidence 47899999999999887766543 33778999999 8888888776
No 214
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=41.42 E-value=29 Score=28.28 Aligned_cols=65 Identities=9% Similarity=-0.065 Sum_probs=38.6
Q ss_pred CcccccccchhcHHHHHHHhhc-cCCc---cEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 24 NLETKKSESEFTVQKLVDMFTK-LNPL---AKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~-~G~i---~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
..-.++|+..+|++++.+..+. ++.- ..+.-.......+ .....-|||.|.+.+ +...-...++|
T Consensus 9 KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~-----~~~~SRaYi~F~~~~----~~~~F~~~~~g 77 (176)
T PF03467_consen 9 KVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFK-----PPTYSRAYINFKNPE----DLLEFRDRFDG 77 (176)
T ss_dssp EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSST-----TS--EEEEEEESSCH----HHHHHHHHCTT
T ss_pred eEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCC-----CCcceEEEEEeCCHH----HHHHHHHhcCC
Confidence 4567889999999999998887 6655 2222111111100 011245999999999 76677777766
No 215
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=41.27 E-value=23 Score=31.77 Aligned_cols=50 Identities=6% Similarity=-0.038 Sum_probs=33.9
Q ss_pred HHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 40 VDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 40 ~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.+.|.+||.|..|.+-++.....+ .....-+||+|...+ +|..++...++
T Consensus 98 ~eyfgqygki~ki~~~~~~S~~s~----~~~~~s~yITy~~~e----da~rci~~v~g 147 (327)
T KOG2068|consen 98 TEYFGQYGKINKIVKNKDPSSSSS----SGGTCSVYITYEEEE----DADRCIDDVDG 147 (327)
T ss_pred cccccccccceEEeecCCcccccC----CCCCCcccccccchH----hhhhHHHHhhh
Confidence 367999999999998876631011 112234899999988 66666666655
No 216
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=40.31 E-value=50 Score=31.50 Aligned_cols=59 Identities=15% Similarity=0.135 Sum_probs=46.6
Q ss_pred EEEcCCCCCC---CHHHHHHHhhcCCCeeEEEEecCCCCCce-EEEEEecCHHHHHHHHHhCCceeCCeeE
Q 024698 119 VYVSDIDQNI---TEERLAGLFSSCGQVVDCRVCGDPHSVLR-FAFVEFADEHGARAALNLGGTMLGYYPV 185 (264)
Q Consensus 119 lfV~nLp~~~---te~~L~~~F~~~G~i~~v~i~~d~~~~~g-~afV~f~~~e~a~~Al~ln~~~~~g~~i 185 (264)
=.||||+.-- ....+.++-++||+|-.+++ | --.|.-.+.+.|.+|+.-++..+.+|+.
T Consensus 35 PiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~l--------G~~~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 35 PIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRL--------GSVPVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred CccccHHHcCCCchhHHHHHHHHHhCCeEEEEe--------cCceEEEECCHHHHHHHHHhCCccccCCCC
Confidence 4578888432 44667777779999999888 3 2478889999999999888999999986
No 217
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=35.62 E-value=28 Score=29.70 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=28.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEE
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCR 147 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~ 147 (264)
..++||+-|+|...|++-|..+.+++|-+..+.
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 457799999999999999999999999655443
No 218
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=35.62 E-value=18 Score=33.90 Aligned_cols=50 Identities=14% Similarity=0.038 Sum_probs=37.1
Q ss_pred CCcccccccchh-cHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCccccc
Q 024698 23 NNLETKKSESEF-TVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNF 85 (264)
Q Consensus 23 ~~~~~~~~~~~~-t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~ 85 (264)
..+........+ |..+|...|.+||+|..|.+-... --|-|+|.+..+|.
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~-------------~~a~vTF~t~aeag 423 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS-------------LHAVVTFKTRAEAG 423 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCch-------------hhheeeeecccccc
Confidence 344444445444 788999999999999999875541 35889999999554
No 219
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=33.68 E-value=90 Score=22.29 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=32.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEec
Q 024698 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFA 164 (264)
Q Consensus 117 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~ 164 (264)
.-+|||+++..+-+.-...+.+..++=..+-+..+.. ..||+|-+.-
T Consensus 26 ~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~n-eqG~~~~t~G 72 (86)
T PF09707_consen 26 PGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNN-EQGFDFRTLG 72 (86)
T ss_pred CCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCC-CCCEEEEEeC
Confidence 3499999998888776666666555554444444444 7789987773
No 220
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=32.93 E-value=81 Score=27.88 Aligned_cols=55 Identities=25% Similarity=0.327 Sum_probs=34.2
Q ss_pred EEEEecCHHHHHHHHH-hCCceeCCeeEEEeeCCCCCCCCCCCCCCCChhhhcCCCCeEEEcCCCCCCCHHHHHHHHh
Q 024698 159 AFVEFADEHGARAALN-LGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFE 235 (264)
Q Consensus 159 afV~f~~~e~a~~Al~-ln~~~~~g~~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~ 235 (264)
|||+|++..+|..|.+ +... +++.+++..+ | ..+-|.-.||.-+..+..+|.++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~--~~~~~~v~~A------------P--------eP~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK--RPNSWRVSPA------------P--------EPDDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC--CCCCceEeeC------------C--------CcccccccccCCChHHHHHHHHHH
Confidence 7999999999999995 2222 2244455542 1 123356677766666666665554
No 221
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=31.97 E-value=1.2e+02 Score=23.22 Aligned_cols=43 Identities=23% Similarity=0.219 Sum_probs=30.0
Q ss_pred EEEcCCCCC-CCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEE
Q 024698 119 VYVSDIDQN-ITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFV 161 (264)
Q Consensus 119 lfV~nLp~~-~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV 161 (264)
|-|.|||.. .+++-++.+-+.+|++..+...........|+-|
T Consensus 107 Vri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~~~~~~~~Rv 150 (153)
T PF14111_consen 107 VRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLKRTRLDFARV 150 (153)
T ss_pred hhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCCcccccEEEE
Confidence 445699965 7778899999999999998774443323334433
No 222
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=29.67 E-value=67 Score=23.03 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=29.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeec
Q 024698 215 TVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMI 249 (264)
Q Consensus 215 ~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~ 249 (264)
+-|.-.+|...+..|+++.++..+|-.|.+|..+.
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~ 55 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMN 55 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeE
Confidence 45666778999999999999999998888887664
No 223
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=29.44 E-value=1.9e+02 Score=20.47 Aligned_cols=54 Identities=17% Similarity=0.151 Sum_probs=39.1
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-CC-CeeEEEEecCCCCCceEEEEEecCHHHHHHHH
Q 024698 119 VYVSDIDQNITEERLAGLFSS-CG-QVVDCRVCGDPHSVLRFAFVEFADEHGARAAL 173 (264)
Q Consensus 119 lfV~nLp~~~te~~L~~~F~~-~G-~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al 173 (264)
-|+--++...+..+|++.+++ || +|..|+...-+. ...=|||.+...+.|....
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~-~~KKA~V~L~~g~~A~~va 78 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK-GEKKAYVKLAEEYDAEEIA 78 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-CcEEEEEEeCCCCcHHHHH
Confidence 445557889999999999986 55 667776654433 2246999999888877665
No 224
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=28.44 E-value=67 Score=21.56 Aligned_cols=34 Identities=15% Similarity=0.144 Sum_probs=25.7
Q ss_pred CCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEE
Q 024698 128 ITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFV 161 (264)
Q Consensus 128 ~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV 161 (264)
.-+.+|.++|-+--+|.++.|...+.-.+|-|||
T Consensus 30 ~~e~eler~fl~~P~v~e~~l~EKKri~~G~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLPEVKEVALYEKKRIRKGAGYV 63 (64)
T ss_pred HHHHHhhhhccCCCCceEEEEEEEEeeeCCceeE
Confidence 3456788888888899999887766656677776
No 225
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.84 E-value=90 Score=30.28 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=33.4
Q ss_pred CCCeEEEcCCCC-CCCHHHHHHHHhhcCC--CceEEEEeecc
Q 024698 212 CSRTVYCTNIDK-KVPQAEVKQFFEAACG--GEVRTLPCMII 250 (264)
Q Consensus 212 ~~~~i~v~nL~~-~~te~~L~~~F~~~~g--G~I~~v~l~~d 250 (264)
..++|-|-||+. .+.-.||.-+|..|++ |.|.+|.|.+.
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpS 214 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPS 214 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechh
Confidence 578899999998 5888999999999954 89999998753
No 226
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=27.32 E-value=1.1e+02 Score=22.07 Aligned_cols=36 Identities=17% Similarity=0.283 Sum_probs=29.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeec
Q 024698 214 RTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMI 249 (264)
Q Consensus 214 ~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~ 249 (264)
.+-|+-.++...+..|+++.++..||-+|.+|....
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~ 55 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLN 55 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEE
Confidence 356677788999999999999999887787776654
No 227
>TIGR01160 SUI1_MOF2 translation initiation factor SUI1, eukaryotic. Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation.
Probab=27.29 E-value=93 Score=23.34 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=24.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHhhc-----CCCceEE-------EEeeccc
Q 024698 214 RTVYCTNIDKKVPQAEVKQFFEAA-----CGGEVRT-------LPCMIIL 251 (264)
Q Consensus 214 ~~i~v~nL~~~~te~~L~~~F~~~-----~gG~I~~-------v~l~~d~ 251 (264)
..-.|.+|+. +.+|+++...+ |||.|.. |.|..|.
T Consensus 40 ~VTiI~Gl~~---~~dlk~l~K~lKkk~~cGGsVk~~~~~~~~IelQGD~ 86 (110)
T TIGR01160 40 TLTTVQGLPK---EYDLKKIVKALKKEFACNGTVIEDPEMGEVIQLQGDQ 86 (110)
T ss_pred cEEEEeccCC---hHHHHHHHHHHHHHhCCCceEEeCCCCCCEEEEeCcH
Confidence 3446789984 56666666555 8899984 7777774
No 228
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=26.65 E-value=79 Score=25.97 Aligned_cols=74 Identities=14% Similarity=0.202 Sum_probs=47.8
Q ss_pred CCEEEEcCCCCCCCH-----HHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCe-eEEEe
Q 024698 116 RRTVYVSDIDQNITE-----ERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYY-PVRVL 188 (264)
Q Consensus 116 ~~~lfV~nLp~~~te-----~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~-~i~V~ 188 (264)
..++.+.+++..+-. .....+|.+|.+....++++ +.++--|.|.+++.|..|. ++++..|.|+ .++.-
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr----sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR----SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH----hhceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 345666677644222 23345666665544333322 4567788999999999999 8999999887 66666
Q ss_pred eCCCC
Q 024698 189 PSKTA 193 (264)
Q Consensus 189 ~~~~~ 193 (264)
.+...
T Consensus 86 faQ~~ 90 (193)
T KOG4019|consen 86 FAQPG 90 (193)
T ss_pred EccCC
Confidence 55443
No 229
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.03 E-value=3.5e+02 Score=26.47 Aligned_cols=73 Identities=18% Similarity=0.273 Sum_probs=55.0
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHHhhcC----CCeeEEEEecCCC-----------CC-----------------------
Q 024698 115 VRRTVYVSDIDQ-NITEERLAGLFSSC----GQVVDCRVCGDPH-----------SV----------------------- 155 (264)
Q Consensus 115 ~~~~lfV~nLp~-~~te~~L~~~F~~~----G~i~~v~i~~d~~-----------~~----------------------- 155 (264)
..+.|-|-|+.| .+.-.+|.-+|+.| |.|.+|.|....- .+
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~~ 252 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEED 252 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhhh
Confidence 456799999996 47889999999865 5899998832100 01
Q ss_pred ---------------ceEEEEEecCHHHHHHHH-HhCCceeCCeeEEE
Q 024698 156 ---------------LRFAFVEFADEHGARAAL-NLGGTMLGYYPVRV 187 (264)
Q Consensus 156 ---------------~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V 187 (264)
--||.|+|.+.+.|.+.. ..+|..+......+
T Consensus 253 ~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~ 300 (650)
T KOG2318|consen 253 VDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKL 300 (650)
T ss_pred HHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecccccee
Confidence 139999999999999999 89999996544333
No 230
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=25.75 E-value=49 Score=30.53 Aligned_cols=52 Identities=12% Similarity=-0.027 Sum_probs=43.4
Q ss_pred cHHHHHHHhhc--cCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 35 TVQKLVDMFTK--LNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 35 t~~~L~~~F~~--~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
+.+++...|.. .+++..+++.++.....++ |-.|++|.... .+++..+.+..
T Consensus 195 ~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~-------gSv~~efk~~~----~~q~~nn~~~r 248 (438)
T COG5193 195 QQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFR-------GSVFVEFKYFR----EAQRFNNGFYR 248 (438)
T ss_pred hhhhHHhhCCCcccCChhhccchhhhhhcccc-------CcccccccChH----HHHHHhccccC
Confidence 57799999999 7899999999998766788 99999999999 77777655543
No 231
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=24.47 E-value=42 Score=33.95 Aligned_cols=54 Identities=11% Similarity=0.062 Sum_probs=43.7
Q ss_pred cccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 27 TKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 27 ~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
..|..-..+-.-|..+|++||.+.+.+..++. ..+-|+|.+.+ .|..|...+.|
T Consensus 303 ~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~-------------N~alvs~~s~~----sai~a~dAl~g 356 (1007)
T KOG4574|consen 303 LENNAVNLTSSSLATLCSDYGSVASAWTLRDL-------------NMALVSFSSVE----SAILALDALQG 356 (1007)
T ss_pred hhcccccchHHHHHHHHHhhcchhhheecccc-------------cchhhhhHHHH----HHHHhhhhhcC
Confidence 34444556778999999999999999988776 45899999999 77778777776
No 232
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=24.17 E-value=2.7e+02 Score=27.08 Aligned_cols=40 Identities=20% Similarity=0.220 Sum_probs=31.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhh-cCCCceEEEEeeccccc
Q 024698 213 SRTVYCTNIDKKVPQAEVKQFFEA-ACGGEVRTLPCMIILFY 253 (264)
Q Consensus 213 ~~~i~v~nL~~~~te~~L~~~F~~-~~gG~I~~v~l~~d~~~ 253 (264)
.+.|.++-||+++..++++.+|.. -|. ++.++....+--|
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encP-k~iscefa~N~nW 215 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCP-KVISCEFAHNDNW 215 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCC-CceeeeeeecCce
Confidence 456678999999999999999975 366 8888888776334
No 233
>PF14480 DNA_pol3_a_NI: DNA polymerase III polC-type N-terminus I
Probab=23.97 E-value=1.4e+02 Score=20.15 Aligned_cols=33 Identities=12% Similarity=0.210 Sum_probs=25.5
Q ss_pred CCHHHHHHHHhhcCCCceEEEEeeccccceeeEEEE
Q 024698 225 VPQAEVKQFFEAACGGEVRTLPCMIILFYFHLFIYY 260 (264)
Q Consensus 225 ~te~~L~~~F~~~~gG~I~~v~l~~d~~~~~~~~~~ 260 (264)
++++....+|+. |.|++|.+-+....+|+.+..
T Consensus 12 ~~~~~~~~~f~~---~~I~kv~v~k~~~~w~f~l~~ 44 (76)
T PF14480_consen 12 IPDELDNPLFED---AEIEKVTVHKKSRKWRFHLSS 44 (76)
T ss_pred CCchhhhhhhcc---cEEEEEEEEccCCEEEEEEEe
Confidence 444445778876 699999999998888887753
No 234
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=23.63 E-value=2e+02 Score=20.14 Aligned_cols=23 Identities=26% Similarity=0.220 Sum_probs=15.3
Q ss_pred CceEEEEeeccccceeeEEEEEEeC
Q 024698 240 GEVRTLPCMIILFYFHLFIYYFLVI 264 (264)
Q Consensus 240 G~I~~v~l~~d~~~~~~~~~~~~~~ 264 (264)
|+|. +|.++.....-++.|=+|+
T Consensus 55 GdVv--kI~R~S~taG~~v~YR~Vv 77 (79)
T PRK09570 55 GDVI--KIVRKSPTAGEAVYYRLVV 77 (79)
T ss_pred CCEE--EEEECCCCCCccEEEEEEe
Confidence 5774 5666666666777776664
No 235
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=23.51 E-value=55 Score=24.71 Aligned_cols=55 Identities=22% Similarity=0.239 Sum_probs=32.9
Q ss_pred chhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhcc
Q 024698 32 SEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFN 96 (264)
Q Consensus 32 ~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~ 96 (264)
--++.++|++.|+.|.++ +++......+ ++ |++.|.|.+.-..-.+|.+--+.|.
T Consensus 27 ~g~~~~~l~~~l~~f~p~-kv~~l~~~~g--h~-------g~aiv~F~~~w~Gf~~A~~l~~~F~ 81 (116)
T PF03468_consen 27 VGMSNEELLDKLAEFNPL-KVKPLYGKQG--HT-------GFAIVEFNKDWSGFKNAMRLEKHFE 81 (116)
T ss_dssp E---SHHHHHHHHH---S-EEEEEEETTE--EE-------EEEEEE--SSHHHHHHHHHHHHHHH
T ss_pred eccCHHHHHHHHHhcCCc-eeEECcCCCC--Cc-------EEEEEEECCChHHHHHHHHHHHHHH
Confidence 345668999999999987 4665555543 34 9999999998855556655555554
No 236
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=22.87 E-value=1.5e+02 Score=18.44 Aligned_cols=28 Identities=29% Similarity=0.319 Sum_probs=21.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCCceE
Q 024698 215 TVYCTNIDKKVPQAEVKQFFEAACGGEVR 243 (264)
Q Consensus 215 ~i~v~nL~~~~te~~L~~~F~~~~gG~I~ 243 (264)
.+++.+..+..+.++|.++...+ ||.|.
T Consensus 3 ~~~i~g~~~~~~~~~l~~~i~~~-Gg~v~ 30 (72)
T cd00027 3 TFVITGDLPSEERDELKELIEKL-GGKVT 30 (72)
T ss_pred EEEEEecCCCcCHHHHHHHHHHc-CCEEe
Confidence 56777766678899999999987 55544
No 237
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.74 E-value=3.8e+02 Score=21.33 Aligned_cols=54 Identities=17% Similarity=0.276 Sum_probs=40.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhc---CCCeeEEEEecCCCC-----------Cce-EEEEEecCHHH
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSS---CGQVVDCRVCGDPHS-----------VLR-FAFVEFADEHG 168 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~---~G~i~~v~i~~d~~~-----------~~g-~afV~f~~~e~ 168 (264)
++..|++.-++..+++++-++.-++ .+++.+|++-+...+ .+. |-+|.|.+-..
T Consensus 86 d~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~ 154 (161)
T COG5353 86 DDGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKE 154 (161)
T ss_pred CCCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchh
Confidence 3467999999999999999988875 467788887554432 233 88999987654
No 238
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=22.37 E-value=1.6e+02 Score=21.56 Aligned_cols=49 Identities=18% Similarity=0.221 Sum_probs=30.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCH
Q 024698 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADE 166 (264)
Q Consensus 117 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~ 166 (264)
.-+|||+++..+-+.-...+-+.+++=.-+-+..+. +..||+|-++.+.
T Consensus 28 ~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~-~eqG~~~~t~G~~ 76 (97)
T PRK11558 28 AGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATN-TESGFEFQTFGEN 76 (97)
T ss_pred CCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCC-CCCCcEEEecCCC
Confidence 349999998887776555555555543333333443 3449998877654
No 239
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=21.79 E-value=1.3e+02 Score=27.66 Aligned_cols=64 Identities=16% Similarity=0.175 Sum_probs=43.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCC-eeEEEEecCCC----CCceEEEEEecCHHHHHHHH-HhCCcee
Q 024698 117 RTVYVSDIDQNITEERLAGLFSSCGQ-VVDCRVCGDPH----SVLRFAFVEFADEHGARAAL-NLGGTML 180 (264)
Q Consensus 117 ~~lfV~nLp~~~te~~L~~~F~~~G~-i~~v~i~~d~~----~~~g~afV~f~~~e~a~~Al-~ln~~~~ 180 (264)
..+.|.+||+..+++++.+-...+-. +.-..+..... ...+.+||.|..++....-. .++|+.|
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 45889999999999998876666432 22222322111 13478999999999966666 5888776
No 240
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=21.53 E-value=2.1e+02 Score=21.36 Aligned_cols=55 Identities=5% Similarity=-0.133 Sum_probs=40.9
Q ss_pred ccchhcHHHHHHHhhccCC-ccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 30 SESEFTVQKLVDMFTKLNP-LAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 30 ~~~~~t~~~L~~~F~~~G~-i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.++-++-++|..+.+.+-. |..++++++... +| =-+-+.|.+.+ .|.+=...|||
T Consensus 21 p~~~~~~d~l~~f~~~~~~~i~~~riird~~p--nr-------ymVLikF~~~~----~Ad~Fy~~fNG 76 (110)
T PF07576_consen 21 PPYMTPSDFLLFFGAPFREDIEHIRIIRDGTP--NR-------YMVLIKFRDQE----SADEFYEEFNG 76 (110)
T ss_pred CcccccHHHHHHhhhcccccEEEEEEeeCCCC--ce-------EEEEEEECCHH----HHHHHHHHhCC
Confidence 4456677788877777754 667888887654 22 45777999999 88888888886
No 241
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=21.37 E-value=1.5e+02 Score=20.58 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=28.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeec
Q 024698 215 TVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMI 249 (264)
Q Consensus 215 ~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~ 249 (264)
+-|+-.++...+..++++.++..||-.|.+|....
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~ 49 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLI 49 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEE
Confidence 46777788999999999999998887777776553
No 242
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=21.33 E-value=3.3e+02 Score=20.22 Aligned_cols=42 Identities=21% Similarity=0.356 Sum_probs=30.0
Q ss_pred HHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH
Q 024698 131 ERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL 173 (264)
Q Consensus 131 ~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al 173 (264)
.++..+.+.+| |..-.|..|..++.-||++++.|.+..-+++
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~~n~lFgy~E~~d~~a~m~~~ 68 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEEENLLFGYWEYEDFEADMAKM 68 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCCcccEEEEEEEcChHHHHHHH
Confidence 45666777776 5566666666556779999999777766665
No 243
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=20.76 E-value=1.3e+02 Score=26.23 Aligned_cols=32 Identities=19% Similarity=0.110 Sum_probs=24.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEE
Q 024698 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRV 148 (264)
Q Consensus 117 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i 148 (264)
....|+|||+++|..-+.+++...-.+....+
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~ 127 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVL 127 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEE
Confidence 45779999999999999999987655544433
No 244
>PF14893 PNMA: PNMA
Probab=20.21 E-value=86 Score=28.34 Aligned_cols=50 Identities=20% Similarity=0.196 Sum_probs=30.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhh----cCCCeeEEEEecCCCCCceEEEEEec
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFS----SCGQVVDCRVCGDPHSVLRFAFVEFA 164 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~----~~G~i~~v~i~~d~~~~~g~afV~f~ 164 (264)
..|.|-|.+||.++++++|++.+. ..|...-..-+..+..+..-++|+|.
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~ 70 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFA 70 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecc
Confidence 356799999999999999988765 44543222111111112346777775
Done!