Query 024698
Match_columns 264
No_of_seqs 272 out of 2412
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 12:51:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024698.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024698hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ghp_A U4/U6 snRNA-associated 100.0 1.2E-33 4.2E-38 247.4 19.4 204 22-252 41-248 (292)
2 3smz_A Protein raver-1, ribonu 100.0 1.6E-33 5.4E-38 245.7 19.3 195 22-250 22-220 (284)
3 4f02_A Polyadenylate-binding p 100.0 2.6E-32 8.9E-37 229.1 11.8 158 23-191 16-179 (213)
4 2qfj_A FBP-interacting repress 100.0 2.5E-30 8.7E-35 216.0 13.5 162 22-194 28-206 (216)
5 3md3_A Nuclear and cytoplasmic 100.0 7.4E-30 2.5E-34 204.1 15.0 155 25-191 3-165 (166)
6 1b7f_A Protein (SXL-lethal pro 100.0 7.3E-30 2.5E-34 204.9 14.4 158 22-190 3-168 (168)
7 2cjk_A Nuclear polyadenylated 100.0 2.2E-30 7.5E-35 208.0 9.8 156 23-191 4-164 (167)
8 1l3k_A Heterogeneous nuclear r 100.0 3.3E-29 1.1E-33 206.1 15.7 159 22-192 13-182 (196)
9 3nmr_A Cugbp ELAV-like family 100.0 1.7E-29 5.7E-34 204.0 13.3 157 23-190 4-174 (175)
10 1fxl_A Paraneoplastic encephal 100.0 4.1E-29 1.4E-33 200.0 13.7 157 23-190 3-167 (167)
11 2g4b_A Splicing factor U2AF 65 99.9 4.7E-27 1.6E-31 189.3 13.4 149 23-190 5-171 (172)
12 1fje_B Nucleolin RBD12, protei 99.9 1E-27 3.5E-32 194.0 8.7 154 22-191 13-172 (175)
13 3tyt_A Heterogeneous nuclear r 99.9 7.8E-27 2.7E-31 194.8 12.5 152 22-189 4-203 (205)
14 3smz_A Protein raver-1, ribonu 99.9 1.7E-26 5.8E-31 201.2 15.1 159 23-192 96-263 (284)
15 2yh0_A Splicing factor U2AF 65 99.9 5.3E-27 1.8E-31 193.2 10.3 152 23-192 5-193 (198)
16 3pgw_A U1-A; protein-RNA compl 99.9 4E-26 1.4E-30 198.6 15.7 153 22-191 9-281 (282)
17 2adc_A Polypyrimidine tract-bi 99.9 1E-25 3.5E-30 190.8 15.5 154 21-193 33-228 (229)
18 4f02_A Polyadenylate-binding p 99.9 1.8E-25 6.1E-30 187.3 16.0 123 115-251 14-139 (213)
19 2ghp_A U4/U6 snRNA-associated 99.9 7.3E-26 2.5E-30 197.9 13.9 158 23-192 118-290 (292)
20 1l3k_A Heterogeneous nuclear r 99.9 2.7E-25 9.2E-30 182.7 16.2 129 113-251 10-140 (196)
21 1qm9_A Polypyrimidine tract-bi 99.9 8.1E-26 2.8E-30 186.7 13.1 152 23-193 4-197 (198)
22 3md3_A Nuclear and cytoplasmic 99.9 3.6E-25 1.2E-29 176.7 16.2 120 117-250 1-122 (166)
23 1fxl_A Paraneoplastic encephal 99.9 4.4E-24 1.5E-28 170.5 18.7 120 116-251 2-124 (167)
24 1b7f_A Protein (SXL-lethal pro 99.9 2.9E-24 9.9E-29 172.1 17.1 121 115-251 2-125 (168)
25 3tyt_A Heterogeneous nuclear r 99.9 1.8E-24 6E-29 180.6 15.6 131 115-250 3-160 (205)
26 3sde_A Paraspeckle component 1 99.9 1.8E-24 6.1E-29 186.7 14.1 150 23-192 23-178 (261)
27 3nmr_A Cugbp ELAV-like family 99.9 3.6E-24 1.2E-28 172.5 14.9 122 115-251 2-131 (175)
28 4f25_A Polyadenylate-binding p 99.9 2.2E-24 7.7E-29 163.7 10.4 108 115-228 4-112 (115)
29 2qfj_A FBP-interacting repress 99.9 1.7E-23 5.9E-28 174.4 15.8 132 115-251 27-161 (216)
30 2cjk_A Nuclear polyadenylated 99.9 3E-24 1E-28 172.0 10.2 120 115-251 2-123 (167)
31 2adc_A Polypyrimidine tract-bi 99.9 1.1E-22 3.6E-27 172.2 17.6 139 114-257 32-194 (229)
32 3pgw_A U1-A; protein-RNA compl 99.9 1.8E-22 6E-27 175.5 18.7 142 113-257 6-249 (282)
33 2g4b_A Splicing factor U2AF 65 99.9 1.5E-22 5E-27 162.9 16.2 117 115-251 3-130 (172)
34 2yh0_A Splicing factor U2AF 65 99.9 2.4E-22 8.2E-27 165.2 17.0 131 115-251 3-150 (198)
35 3sde_A Paraspeckle component 1 99.9 2.1E-22 7E-27 173.8 16.9 111 114-250 20-131 (261)
36 1qm9_A Polypyrimidine tract-bi 99.9 9.2E-23 3.1E-27 168.2 14.0 137 115-256 2-162 (198)
37 2kn4_A Immunoglobulin G-bindin 99.9 4.1E-22 1.4E-26 159.1 11.8 131 51-194 2-151 (158)
38 1fje_B Nucleolin RBD12, protei 99.9 2.4E-22 8E-27 162.4 7.9 119 112-245 9-129 (175)
39 4fxv_A ELAV-like protein 1; RN 99.8 3.5E-20 1.2E-24 136.8 10.8 78 115-192 18-98 (99)
40 2i2y_A Fusion protein consists 99.8 5.5E-20 1.9E-24 145.6 8.7 114 72-192 14-147 (150)
41 2lea_A Serine/arginine-rich sp 99.8 3.6E-20 1.2E-24 144.4 7.2 122 72-194 2-128 (135)
42 2hvz_A Splicing factor, argini 99.8 7.6E-20 2.6E-24 135.1 8.5 99 117-222 1-100 (101)
43 3lqv_A PRE-mRNA branch site pr 99.8 1.8E-19 6.1E-24 136.2 8.5 101 114-237 6-107 (115)
44 3s8s_A Histone-lysine N-methyl 99.8 7.5E-19 2.6E-23 132.1 11.7 77 115-191 5-84 (110)
45 2cqi_A Nucleolysin TIAR; RNA r 99.8 2E-18 6.9E-23 127.8 12.9 81 113-193 12-93 (103)
46 2cq3_A RNA-binding protein 9; 99.8 3.2E-18 1.1E-22 126.7 13.7 81 113-193 12-93 (103)
47 2lxi_A RNA-binding protein 10; 99.8 3.8E-19 1.3E-23 129.1 7.0 77 116-192 1-82 (91)
48 2dgo_A Cytotoxic granule-assoc 99.8 5.8E-18 2E-22 127.8 13.6 84 112-195 11-97 (115)
49 1s79_A Lupus LA protein; RRM, 99.8 1.2E-18 4E-23 129.6 8.9 80 112-191 7-87 (103)
50 2dgx_A KIAA0430 protein; RRM d 99.8 3.1E-18 1.1E-22 125.4 11.0 78 115-193 8-90 (96)
51 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.3E-18 7.7E-23 122.8 10.0 78 114-191 5-85 (85)
52 2cq0_A Eukaryotic translation 99.8 4.2E-18 1.4E-22 126.0 11.8 82 112-193 11-95 (103)
53 2lkz_A RNA-binding protein 5; 99.8 6.9E-19 2.4E-23 128.8 7.3 78 115-192 8-94 (95)
54 3p5t_L Cleavage and polyadenyl 99.8 4.4E-19 1.5E-23 128.4 6.1 77 117-193 2-83 (90)
55 2cqc_A Arginine/serine-rich sp 99.8 4E-18 1.4E-22 124.1 11.1 80 113-192 12-94 (95)
56 3s7r_A Heterogeneous nuclear r 99.8 4.2E-18 1.4E-22 122.1 11.0 79 112-190 7-87 (87)
57 2cpf_A RNA binding motif prote 99.8 3.7E-18 1.3E-22 125.1 10.8 80 115-194 4-89 (98)
58 3ucg_A Polyadenylate-binding p 99.8 4.6E-18 1.6E-22 122.3 11.1 78 116-193 6-85 (89)
59 2dgv_A HnRNP M, heterogeneous 99.8 4E-18 1.4E-22 123.4 10.7 81 114-194 6-87 (92)
60 2ywk_A Putative RNA-binding pr 99.8 3E-18 1E-22 124.8 10.1 80 112-191 12-93 (95)
61 2d9p_A Polyadenylate-binding p 99.8 5.2E-18 1.8E-22 125.5 11.5 81 113-193 12-93 (103)
62 2e5h_A Zinc finger CCHC-type a 99.8 4.6E-18 1.6E-22 123.6 10.9 79 113-191 13-94 (94)
63 3md1_A Nuclear and cytoplasmic 99.8 5.2E-18 1.8E-22 120.4 11.0 76 117-192 2-80 (83)
64 2dgs_A DAZ-associated protein 99.8 7.3E-18 2.5E-22 123.9 12.1 81 113-193 7-89 (99)
65 2fy1_A RNA-binding motif prote 99.8 4.7E-18 1.6E-22 128.9 11.2 81 114-194 5-87 (116)
66 1whw_A Hypothetical protein ri 99.8 8.7E-18 3E-22 123.4 12.2 80 114-193 6-88 (99)
67 1sjq_A Polypyrimidine tract-bi 99.8 4E-18 1.4E-22 126.6 10.4 77 113-193 13-92 (105)
68 2err_A Ataxin-2-binding protei 99.8 3.1E-18 1.1E-22 128.4 9.8 81 112-192 25-106 (109)
69 2dnz_A Probable RNA-binding pr 99.8 8.5E-18 2.9E-22 122.4 11.9 80 115-194 4-86 (95)
70 2do4_A Squamous cell carcinoma 99.8 8.4E-18 2.9E-22 123.8 12.0 80 113-192 14-95 (100)
71 3bs9_A Nucleolysin TIA-1 isofo 99.8 4.4E-18 1.5E-22 121.8 10.0 77 115-191 5-84 (87)
72 2dnm_A SRP46 splicing factor; 99.8 3.9E-18 1.3E-22 126.2 9.7 82 112-193 9-93 (103)
73 1x5u_A Splicing factor 3B subu 99.8 8E-18 2.7E-22 124.9 11.3 82 112-193 11-95 (105)
74 2cpz_A CUG triplet repeat RNA- 99.7 1.3E-17 4.3E-22 126.0 12.2 81 113-193 22-105 (115)
75 2dnh_A Bruno-like 5, RNA bindi 99.7 1.3E-17 4.3E-22 123.8 12.0 80 114-193 13-97 (105)
76 2x1f_A MRNA 3'-END-processing 99.7 8.5E-18 2.9E-22 122.9 10.9 78 116-193 2-82 (96)
77 2cph_A RNA binding motif prote 99.7 9.5E-18 3.3E-22 124.8 11.4 81 113-193 12-97 (107)
78 1x4a_A Splicing factor, argini 99.7 1.9E-17 6.6E-22 123.8 12.8 80 113-193 19-99 (109)
79 4a8x_A RNA-binding protein wit 99.7 6.8E-18 2.3E-22 121.0 9.8 78 115-192 3-84 (88)
80 1x5t_A Splicing factor 3B subu 99.7 9E-18 3.1E-22 122.5 10.5 79 115-193 4-86 (96)
81 2cqb_A Peptidyl-prolyl CIS-tra 99.7 9.4E-18 3.2E-22 123.9 10.5 80 114-193 10-92 (102)
82 2div_A TRNA selenocysteine ass 99.7 7.6E-18 2.6E-22 123.7 9.8 80 114-193 7-94 (99)
83 2cpi_A CCR4-NOT transcription 99.7 7.3E-18 2.5E-22 126.7 9.9 79 115-193 14-101 (111)
84 3pgw_S U1-70K; protein-RNA com 99.7 3E-18 1E-22 157.9 9.4 78 115-192 101-181 (437)
85 1x4h_A RNA-binding protein 28; 99.7 1.9E-17 6.6E-22 124.0 11.9 80 113-192 12-100 (111)
86 1oo0_B CG8781-PA, drosophila Y 99.7 9.3E-18 3.2E-22 125.7 10.0 78 115-192 25-105 (110)
87 2cqd_A RNA-binding region cont 99.7 2.5E-17 8.6E-22 124.5 12.5 81 112-193 13-96 (116)
88 1p27_B RNA-binding protein 8A; 99.7 9.7E-18 3.3E-22 124.7 9.7 78 115-192 22-102 (106)
89 2la6_A RNA-binding protein FUS 99.7 1.4E-17 4.8E-22 122.4 10.5 79 112-190 9-98 (99)
90 2dng_A Eukaryotic translation 99.7 3E-17 1E-21 121.5 12.2 79 114-193 13-93 (103)
91 3ns6_A Eukaryotic translation 99.7 3E-18 1E-22 126.5 6.7 77 115-191 5-91 (100)
92 1x5s_A Cold-inducible RNA-bind 99.7 9.6E-18 3.3E-22 123.8 9.4 80 114-193 10-92 (102)
93 2do0_A HnRNP M, heterogeneous 99.7 4.9E-17 1.7E-21 122.4 13.4 80 114-193 13-94 (114)
94 2jrs_A RNA-binding protein 39; 99.7 1.3E-17 4.5E-22 124.8 10.1 82 111-192 21-105 (108)
95 2wbr_A GW182, gawky, LD47780P; 99.7 1.1E-17 3.8E-22 119.4 9.2 71 116-190 7-78 (89)
96 2mss_A Protein (musashi1); RNA 99.7 4.3E-18 1.5E-22 118.6 6.9 73 118-190 1-75 (75)
97 2cq1_A PTB-like protein L; RRM 99.7 2.8E-17 9.7E-22 121.6 11.7 75 115-193 14-91 (101)
98 2dgp_A Bruno-like 4, RNA bindi 99.7 1.4E-17 5E-22 123.7 10.1 82 112-193 9-96 (106)
99 2krb_A Eukaryotic translation 99.7 4.2E-18 1.4E-22 120.6 6.7 73 116-188 1-81 (81)
100 2khc_A Testis-specific RNP-typ 99.7 1.3E-17 4.4E-22 126.4 9.8 79 113-191 37-118 (118)
101 1x4e_A RNA binding motif, sing 99.7 4.4E-18 1.5E-22 121.5 6.4 77 115-191 4-83 (85)
102 1wi8_A EIF-4B, eukaryotic tran 99.7 3.1E-17 1.1E-21 121.6 11.2 78 115-193 14-94 (104)
103 2hgl_A HNRPF protein, heteroge 99.7 9E-18 3.1E-22 130.8 8.5 79 113-191 41-123 (136)
104 2cpe_A RNA-binding protein EWS 99.7 3.5E-17 1.2E-21 123.1 11.3 82 112-193 11-103 (113)
105 2nlw_A Eukaryotic translation 99.7 1.1E-17 3.8E-22 124.5 8.4 78 114-191 13-98 (105)
106 2dhg_A TRNA selenocysteine ass 99.7 3E-17 1E-21 121.6 10.6 81 113-193 6-90 (104)
107 2cqg_A TDP-43, TAR DNA-binding 99.7 7E-17 2.4E-21 119.4 12.6 81 112-193 11-93 (103)
108 2kxn_B Transformer-2 protein h 99.7 1.9E-17 6.4E-22 128.0 9.8 80 113-192 43-125 (129)
109 3ulh_A THO complex subunit 4; 99.7 3.8E-17 1.3E-21 121.6 11.0 78 114-191 27-106 (107)
110 2hgn_A Heterogeneous nuclear r 99.7 2.4E-18 8.1E-23 134.6 4.6 119 72-192 2-122 (139)
111 2dh8_A DAZ-associated protein 99.7 2.7E-17 9.1E-22 122.1 10.0 82 112-193 12-95 (105)
112 2jwn_A Embryonic polyadenylate 99.7 3.5E-17 1.2E-21 125.1 10.6 80 115-194 35-116 (124)
113 2kt5_A RNA and export factor-b 99.7 8.6E-17 2.9E-21 123.1 12.8 80 115-194 34-115 (124)
114 2jvr_A Nucleolar protein 3; RN 99.7 1.8E-17 6.3E-22 124.6 8.7 77 114-192 26-104 (111)
115 2dgw_A Probable RNA-binding pr 99.7 5.5E-17 1.9E-21 117.3 11.0 79 113-192 7-86 (91)
116 2ytc_A PRE-mRNA-splicing facto 99.7 3.9E-17 1.3E-21 116.4 9.9 75 113-191 9-85 (85)
117 1x4g_A Nucleolysin TIAR; struc 99.7 6E-17 2E-21 121.2 11.3 78 112-193 21-99 (109)
118 2dnq_A RNA-binding protein 4B; 99.7 7.2E-17 2.5E-21 116.5 11.3 74 114-193 6-80 (90)
119 2db1_A Heterogeneous nuclear r 99.7 3E-17 1E-21 124.8 9.6 78 114-191 15-96 (118)
120 1x4d_A Matrin 3; structural ge 99.7 2.3E-17 8E-22 122.1 8.7 74 115-192 14-91 (102)
121 1wez_A HnRNP H', FTP-3, hetero 99.7 1.8E-17 6.2E-22 122.8 8.1 80 113-193 12-92 (102)
122 3n9u_C Cleavage and polyadenyl 99.7 3.8E-17 1.3E-21 130.3 10.5 77 115-191 54-135 (156)
123 1u6f_A Tcubp1, RNA-binding pro 99.7 6.1E-17 2.1E-21 126.2 11.5 82 112-193 38-122 (139)
124 2dnp_A RNA-binding protein 14; 99.7 5.8E-17 2E-21 117.0 10.5 75 113-193 6-81 (90)
125 2ad9_A Polypyrimidine tract-bi 99.7 4.5E-17 1.5E-21 123.8 10.3 75 115-193 30-107 (119)
126 2dgt_A RNA-binding protein 30; 99.7 1.1E-16 3.8E-21 116.0 12.0 75 113-193 7-82 (92)
127 2cpy_A RNA-binding protein 12; 99.7 2.9E-17 1E-21 124.0 9.2 79 113-191 12-92 (114)
128 1x4c_A Splicing factor, argini 99.7 1.7E-16 5.8E-21 118.6 13.2 74 115-193 14-93 (108)
129 2cqp_A RNA-binding protein 12; 99.7 2.5E-17 8.4E-22 120.7 8.3 78 115-192 14-94 (98)
130 2rs2_A Musashi-1, RNA-binding 99.7 7E-17 2.4E-21 121.0 11.0 81 112-192 21-103 (109)
131 2cpj_A Non-POU domain-containi 99.7 4.5E-17 1.5E-21 119.6 9.8 77 113-193 12-89 (99)
132 1p1t_A Cleavage stimulation fa 99.7 2.7E-17 9.4E-22 121.7 8.4 78 115-192 7-87 (104)
133 1x4b_A Heterogeneous nuclear r 99.7 9E-17 3.1E-21 121.5 11.4 79 115-193 26-106 (116)
134 3r27_A HnRNP L, heterogeneous 99.7 6.9E-17 2.4E-21 118.8 10.3 74 115-192 20-96 (100)
135 1why_A Hypothetical protein ri 99.7 8.3E-17 2.8E-21 117.8 10.7 74 115-192 16-92 (97)
136 1h2v_Z 20 kDa nuclear CAP bind 99.7 8.5E-17 2.9E-21 128.0 11.6 81 113-193 36-119 (156)
137 2e5j_A Methenyltetrahydrofolat 99.7 5.5E-17 1.9E-21 118.8 9.6 76 114-192 17-93 (97)
138 2la4_A Nuclear and cytoplasmic 99.7 5.5E-17 1.9E-21 119.6 9.6 75 113-191 24-99 (101)
139 1wg5_A Heterogeneous nuclear r 99.7 5.7E-17 1.9E-21 120.4 9.6 79 114-192 13-93 (104)
140 2cpd_A Apobec-1 stimulating pr 99.7 2.4E-16 8.1E-21 115.8 12.9 73 115-193 14-89 (99)
141 2ek1_A RNA-binding protein 12; 99.7 2.4E-17 8.2E-22 120.0 7.4 77 115-191 14-93 (95)
142 2xnq_A Nuclear polyadenylated 99.7 1.2E-16 4.1E-21 117.2 11.1 74 113-192 19-94 (97)
143 2jvo_A Nucleolar protein 3; nu 99.7 8.6E-17 2.9E-21 120.4 10.5 75 112-192 27-102 (108)
144 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.8E-17 6.3E-22 122.1 6.7 78 113-191 16-96 (100)
145 1wex_A Hypothetical protein (r 99.7 5.5E-17 1.9E-21 120.6 9.3 75 115-193 14-91 (104)
146 2e5g_A U6 snRNA-specific termi 99.7 2E-16 7E-21 115.1 12.0 75 115-192 7-81 (94)
147 2cq4_A RNA binding motif prote 99.7 5.1E-17 1.8E-21 122.4 9.0 77 115-191 24-102 (114)
148 1rk8_A CG8781-PA, CG8781-PA pr 99.7 7.2E-17 2.5E-21 129.7 10.5 78 115-192 71-151 (165)
149 2fc9_A NCL protein; structure 99.7 1.7E-16 5.7E-21 116.9 11.4 78 113-193 12-91 (101)
150 2dnn_A RNA-binding protein 12; 99.7 1E-16 3.5E-21 120.2 10.4 75 116-191 16-91 (109)
151 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.8E-17 6.1E-22 115.9 5.8 73 117-190 1-76 (77)
152 2ki2_A SS-DNA binding protein 99.7 8.1E-18 2.8E-22 121.4 3.9 76 117-193 2-80 (90)
153 1x5o_A RNA binding motif, sing 99.7 1.5E-16 5E-21 119.8 11.0 80 112-191 21-110 (114)
154 2dis_A Unnamed protein product 99.7 1.3E-16 4.6E-21 119.0 10.7 80 115-194 7-93 (109)
155 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.2E-16 4E-21 124.4 10.7 78 113-190 60-140 (140)
156 1iqt_A AUF1, heterogeneous nuc 99.7 1.4E-17 4.8E-22 115.9 4.8 73 118-190 1-75 (75)
157 2a3j_A U1 small nuclear ribonu 99.7 7.9E-17 2.7E-21 124.1 9.3 77 115-192 28-109 (127)
158 3ex7_B RNA-binding protein 8A; 99.7 7.6E-17 2.6E-21 123.6 9.2 79 115-193 21-102 (126)
159 2m2b_A RNA-binding protein 10; 99.7 3.2E-17 1.1E-21 126.8 6.7 80 113-193 20-108 (131)
160 2dgu_A Heterogeneous nuclear r 99.7 3.1E-16 1.1E-20 116.0 11.7 74 115-194 10-84 (103)
161 1whx_A Hypothetical protein ri 99.7 6.6E-17 2.3E-21 121.5 8.0 76 115-194 9-85 (111)
162 2kvi_A Nuclear polyadenylated 99.7 6.9E-17 2.4E-21 118.1 7.4 74 114-193 8-83 (96)
163 2lmi_A GRSF-1, G-rich sequence 99.7 4.3E-17 1.5E-21 121.7 5.9 79 113-191 8-90 (107)
164 1nu4_A U1A RNA binding domain; 99.7 9.2E-17 3.1E-21 117.3 7.2 78 114-192 6-88 (97)
165 1wf1_A RNA-binding protein RAL 99.7 3E-16 1E-20 117.5 10.1 73 115-193 26-100 (110)
166 1wg1_A KIAA1579 protein, homol 99.7 2.4E-16 8.3E-21 113.3 8.9 74 115-193 4-78 (88)
167 1wel_A RNA-binding protein 12; 99.7 8E-17 2.7E-21 123.3 6.3 78 114-191 23-102 (124)
168 1fjc_A Nucleolin RBD2, protein 99.7 1.9E-16 6.5E-21 115.5 7.9 75 115-192 15-90 (96)
169 2cqh_A IGF-II mRNA-binding pro 99.7 2.8E-16 9.6E-21 114.0 8.3 75 114-193 6-83 (93)
170 2cpx_A Hypothetical protein FL 99.7 5.1E-16 1.8E-20 117.0 9.8 77 115-193 24-105 (115)
171 1sjr_A Polypyrimidine tract-bi 99.7 4.6E-16 1.6E-20 124.2 9.9 77 115-193 45-124 (164)
172 2e44_A Insulin-like growth fac 99.6 4.1E-16 1.4E-20 113.7 8.7 76 115-192 14-91 (96)
173 2hgm_A HNRPF protein, heteroge 99.6 2E-16 7E-21 121.5 7.3 77 114-191 40-119 (126)
174 1x5p_A Negative elongation fac 99.6 2.6E-15 9E-20 109.7 13.0 75 113-193 12-87 (97)
175 2fc8_A NCL protein; structure 99.6 1.2E-15 4.2E-20 112.4 11.2 78 113-193 12-92 (102)
176 2dha_A FLJ20171 protein; RRM d 99.6 2E-16 6.8E-21 121.1 7.0 76 115-190 22-102 (123)
177 3q2s_C Cleavage and polyadenyl 99.6 2.9E-16 9.9E-21 132.9 8.7 77 115-191 67-148 (229)
178 2hzc_A Splicing factor U2AF 65 99.6 5.4E-16 1.9E-20 110.8 8.6 71 115-189 5-86 (87)
179 4f25_A Polyadenylate-binding p 99.6 7.4E-17 2.5E-21 122.0 4.2 97 23-132 6-113 (115)
180 1x4f_A Matrin 3; structural ge 99.6 7E-16 2.4E-20 115.9 9.4 76 113-192 22-101 (112)
181 3d2w_A TAR DNA-binding protein 99.6 7.4E-16 2.5E-20 111.2 9.1 74 114-191 9-82 (89)
182 2xs2_A Deleted in azoospermia- 99.6 2.9E-16 9.8E-21 115.9 6.9 76 115-191 8-84 (102)
183 1fj7_A Nucleolin RBD1, protein 99.6 9.3E-17 3.2E-21 118.3 4.1 77 115-192 16-94 (101)
184 3zzy_A Polypyrimidine tract-bi 99.6 1.5E-15 5E-20 116.9 10.8 75 117-194 29-107 (130)
185 2cq2_A Hypothetical protein LO 99.6 6.1E-16 2.1E-20 116.5 7.5 73 115-191 24-104 (114)
186 3egn_A RNA-binding protein 40; 99.6 8E-16 2.7E-20 120.5 8.3 79 114-193 43-130 (143)
187 2lcw_A RNA-binding protein FUS 99.4 3E-17 1E-21 124.2 0.0 79 114-192 5-94 (116)
188 3beg_B Splicing factor, argini 99.6 1.1E-15 3.7E-20 115.6 8.3 73 115-192 15-93 (115)
189 1wf0_A TDP-43, TAR DNA-binding 99.6 1.2E-15 4.1E-20 109.5 8.1 74 115-192 4-77 (88)
190 2f3j_A RNA and export factor b 99.6 1.4E-15 4.6E-20 123.8 8.8 79 115-193 87-167 (177)
191 2voo_A Lupus LA protein; RNA-b 99.6 4.5E-15 1.5E-19 122.3 10.9 77 116-192 109-186 (193)
192 2dnl_A Cytoplasmic polyadenyla 99.6 4.9E-15 1.7E-19 111.7 10.2 72 115-189 7-84 (114)
193 2e5i_A Heterogeneous nuclear r 99.6 5E-15 1.7E-19 113.3 10.0 72 118-193 27-102 (124)
194 2j8a_A Histone-lysine N-methyl 99.6 5.2E-15 1.8E-19 112.6 8.6 76 117-192 3-95 (136)
195 2bz2_A Negative elongation fac 99.6 8.6E-15 2.9E-19 111.7 9.3 74 113-192 36-110 (121)
196 2diu_A KIAA0430 protein; struc 99.6 7.8E-15 2.7E-19 105.7 8.4 70 116-193 8-84 (96)
197 2pe8_A Splicing factor 45; RRM 99.6 2.2E-14 7.5E-19 106.7 10.8 78 114-191 6-92 (105)
198 3u1l_A PRE-mRNA-splicing facto 99.5 1.7E-14 5.8E-19 122.2 8.7 75 114-192 132-228 (240)
199 2dit_A HIV TAT specific factor 99.5 1.2E-13 4E-18 103.7 10.9 79 112-192 11-101 (112)
200 4fxv_A ELAV-like protein 1; RN 99.5 4.3E-14 1.5E-18 103.9 4.8 65 22-97 19-83 (99)
201 1jmt_A Splicing factor U2AF 35 99.4 4.4E-14 1.5E-18 104.9 4.5 70 121-190 20-103 (104)
202 2kn4_A Immunoglobulin G-bindin 99.4 1.9E-13 6.5E-18 108.5 8.5 103 145-250 2-105 (158)
203 2lkz_A RNA-binding protein 5; 99.4 7.5E-14 2.6E-18 101.9 4.9 65 23-98 10-76 (95)
204 2i2y_A Fusion protein consists 99.4 4.3E-13 1.5E-17 105.7 9.3 109 147-258 4-116 (150)
205 3v4m_A Splicing factor U2AF 65 99.4 4.9E-13 1.7E-17 99.3 8.6 76 115-190 4-94 (105)
206 2lxi_A RNA-binding protein 10; 99.4 1.2E-13 4.2E-18 99.8 3.9 64 23-97 2-66 (91)
207 3s8s_A Histone-lysine N-methyl 99.4 2.7E-13 9.2E-18 101.6 5.1 64 23-97 7-70 (110)
208 2cpz_A CUG triplet repeat RNA- 99.4 9E-13 3.1E-17 99.1 6.8 65 22-97 25-89 (115)
209 3lqv_A PRE-mRNA branch site pr 99.4 3.1E-13 1E-17 101.6 3.5 99 22-142 8-109 (115)
210 3ue2_A Poly(U)-binding-splicin 99.3 2.2E-12 7.7E-17 97.7 8.2 76 115-190 19-106 (118)
211 3ns6_A Eukaryotic translation 99.3 4.6E-13 1.6E-17 98.4 4.2 64 23-97 7-76 (100)
212 2e5h_A Zinc finger CCHC-type a 99.3 1.3E-12 4.4E-17 94.5 6.5 66 21-97 15-80 (94)
213 2khc_A Testis-specific RNP-typ 99.3 1.4E-12 4.8E-17 98.4 6.6 63 24-97 42-104 (118)
214 3p5t_L Cleavage and polyadenyl 99.3 7.8E-13 2.7E-17 95.1 4.5 63 24-97 3-67 (90)
215 2hvz_A Splicing factor, argini 99.3 7E-13 2.4E-17 97.3 4.3 57 25-97 3-59 (101)
216 2kxn_B Transformer-2 protein h 99.3 2.1E-12 7.3E-17 99.4 6.4 64 23-97 47-110 (129)
217 2wbr_A GW182, gawky, LD47780P; 99.3 2.2E-12 7.6E-17 91.9 5.7 81 23-138 8-88 (89)
218 2div_A TRNA selenocysteine ass 99.3 2.2E-12 7.5E-17 94.2 5.6 66 21-97 8-74 (99)
219 2dgp_A Bruno-like 4, RNA bindi 99.3 1.6E-12 5.4E-17 96.2 4.9 65 22-97 13-77 (106)
220 2d9o_A DNAJ (HSP40) homolog, s 99.3 9.6E-12 3.3E-16 91.4 9.0 63 126-193 27-90 (100)
221 1whw_A Hypothetical protein ri 99.3 2.5E-12 8.7E-17 93.9 5.7 65 22-97 8-72 (99)
222 1s79_A Lupus LA protein; RRM, 99.3 2.4E-12 8.3E-17 95.2 5.5 63 22-97 11-73 (103)
223 3tht_A Alkylated DNA repair pr 99.3 7.5E-12 2.6E-16 111.4 9.6 74 113-190 15-96 (345)
224 1x5u_A Splicing factor 3B subu 99.3 3.5E-12 1.2E-16 94.2 6.1 66 21-97 14-79 (105)
225 3mdf_A Peptidyl-prolyl CIS-tra 99.3 2.2E-12 7.4E-17 91.4 4.8 66 21-97 6-71 (85)
226 2cqc_A Arginine/serine-rich sp 99.3 2.5E-12 8.5E-17 93.1 5.2 65 22-97 15-79 (95)
227 2cqb_A Peptidyl-prolyl CIS-tra 99.3 3.8E-12 1.3E-16 93.5 6.1 65 22-97 12-76 (102)
228 3s6e_A RNA-binding protein 39; 99.3 1.6E-11 5.6E-16 92.3 9.6 75 114-190 5-90 (114)
229 3bs9_A Nucleolysin TIA-1 isofo 99.3 2E-12 6.8E-17 92.0 4.3 64 23-97 7-70 (87)
230 1x4e_A RNA binding motif, sing 99.3 1.6E-12 5.5E-17 92.2 3.7 65 22-97 5-69 (85)
231 2cqd_A RNA-binding region cont 99.3 4.2E-12 1.4E-16 95.6 6.2 66 21-97 16-81 (116)
232 2dnh_A Bruno-like 5, RNA bindi 99.3 3.2E-12 1.1E-16 94.4 5.3 64 22-97 15-78 (105)
233 2dgs_A DAZ-associated protein 99.3 4.4E-12 1.5E-16 92.6 5.8 65 21-97 9-73 (99)
234 2ywk_A Putative RNA-binding pr 99.3 2.8E-12 9.6E-17 92.8 4.7 64 22-97 16-79 (95)
235 2mss_A Protein (musashi1); RNA 99.3 3.8E-12 1.3E-16 88.1 5.2 61 25-97 2-62 (75)
236 2cph_A RNA binding motif prote 99.3 6.1E-12 2.1E-16 93.1 6.6 67 20-97 13-81 (107)
237 1x5s_A Cold-inducible RNA-bind 99.3 4.2E-12 1.4E-16 93.2 5.6 65 22-97 12-76 (102)
238 1x4h_A RNA-binding protein 28; 99.3 6.2E-12 2.1E-16 93.7 6.5 65 21-96 14-78 (111)
239 2dnm_A SRP46 splicing factor; 99.3 6.1E-12 2.1E-16 92.6 6.4 65 22-97 13-77 (103)
240 2hgm_A HNRPF protein, heteroge 99.3 5.2E-12 1.8E-16 96.8 6.2 62 20-94 40-103 (126)
241 3s7r_A Heterogeneous nuclear r 99.3 4.4E-12 1.5E-16 90.3 5.4 63 21-94 10-72 (87)
242 1uaw_A Mouse-musashi-1; RNP-ty 99.3 4.2E-12 1.4E-16 88.2 5.1 61 25-96 3-63 (77)
243 2rs2_A Musashi-1, RNA-binding 99.3 3.8E-12 1.3E-16 94.9 5.1 63 22-95 25-87 (109)
244 3md1_A Nuclear and cytoplasmic 99.3 3.3E-12 1.1E-16 90.1 4.5 63 24-97 3-65 (83)
245 2dh8_A DAZ-associated protein 99.3 7.7E-12 2.6E-16 92.3 6.6 65 21-97 15-79 (105)
246 2x1f_A MRNA 3'-END-processing 99.3 4.9E-12 1.7E-16 91.9 5.3 63 24-97 4-66 (96)
247 2do4_A Squamous cell carcinoma 99.3 6.3E-12 2.2E-16 92.0 5.9 64 22-97 17-80 (100)
248 2dnz_A Probable RNA-binding pr 99.3 6.5E-12 2.2E-16 90.9 5.8 64 23-97 6-69 (95)
249 2fy1_A RNA-binding motif prote 99.2 9.1E-12 3.1E-16 94.0 6.7 64 22-97 7-70 (116)
250 1x5t_A Splicing factor 3B subu 99.2 5.6E-12 1.9E-16 91.4 5.0 65 22-97 5-70 (96)
251 2jrs_A RNA-binding protein 39; 99.2 4E-12 1.4E-16 94.7 4.4 64 23-97 27-90 (108)
252 1sjq_A Polypyrimidine tract-bi 99.2 4.7E-12 1.6E-16 93.8 4.7 61 20-97 14-74 (105)
253 2lea_A Serine/arginine-rich sp 99.2 8.6E-12 3E-16 96.7 6.4 65 22-97 47-111 (135)
254 2dgo_A Cytotoxic granule-assoc 99.2 6.1E-12 2.1E-16 94.4 5.2 64 23-97 16-79 (115)
255 3ucg_A Polyadenylate-binding p 99.2 4E-12 1.4E-16 90.8 3.9 63 23-97 7-69 (89)
256 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.2 9.7E-12 3.3E-16 96.3 6.3 65 22-97 63-127 (140)
257 2cq0_A Eukaryotic translation 99.2 5E-12 1.7E-16 93.0 4.2 65 22-97 15-79 (103)
258 2cpe_A RNA-binding protein EWS 99.2 1E-11 3.6E-16 92.8 6.0 67 20-97 13-87 (113)
259 1p27_B RNA-binding protein 8A; 99.2 6.6E-12 2.2E-16 92.8 4.7 64 23-97 24-87 (106)
260 2la6_A RNA-binding protein FUS 99.2 9E-12 3.1E-16 91.0 5.4 65 22-97 13-85 (99)
261 2krb_A Eukaryotic translation 99.2 7.7E-12 2.6E-16 88.0 4.8 61 24-97 3-69 (81)
262 2kt5_A RNA and export factor-b 99.2 1.3E-11 4.4E-16 94.0 6.3 63 23-97 36-98 (124)
263 1iqt_A AUF1, heterogeneous nuc 99.2 8.7E-12 3E-16 86.2 4.7 59 25-94 2-60 (75)
264 1oo0_B CG8781-PA, drosophila Y 99.2 1.1E-11 3.6E-16 92.4 5.4 64 23-97 27-90 (110)
265 2cq4_A RNA binding motif prote 99.2 7.1E-12 2.4E-16 94.0 4.4 63 23-97 26-88 (114)
266 2m2b_A RNA-binding protein 10; 99.2 1.2E-11 4.1E-16 95.2 5.7 63 22-93 23-87 (131)
267 3n9u_C Cleavage and polyadenyl 99.2 8E-12 2.7E-16 99.3 4.6 64 23-97 56-121 (156)
268 2cqg_A TDP-43, TAR DNA-binding 99.2 1.6E-11 5.4E-16 90.3 5.7 63 21-94 14-76 (103)
269 3ex7_B RNA-binding protein 8A; 99.2 1.3E-11 4.5E-16 94.1 5.4 65 22-97 22-86 (126)
270 1u6f_A Tcubp1, RNA-binding pro 99.2 1E-11 3.5E-16 96.3 4.7 65 22-97 42-106 (139)
271 1p1t_A Cleavage stimulation fa 99.2 1.1E-11 3.8E-16 91.2 4.6 64 23-97 9-72 (104)
272 2cqp_A RNA-binding protein 12; 99.2 5.5E-12 1.9E-16 91.9 2.9 64 23-97 16-79 (98)
273 2cpf_A RNA binding motif prote 99.2 9.7E-12 3.3E-16 90.6 4.2 65 22-97 5-72 (98)
274 2dhg_A TRNA selenocysteine ass 99.2 1.6E-11 5.6E-16 90.3 5.3 64 22-97 9-73 (104)
275 4a8x_A RNA-binding protein wit 99.2 9E-12 3.1E-16 88.7 3.7 64 23-97 5-69 (88)
276 2ek1_A RNA-binding protein 12; 99.2 4.8E-12 1.7E-16 91.6 2.3 64 23-97 16-79 (95)
277 2jwn_A Embryonic polyadenylate 99.2 7.2E-12 2.5E-16 95.3 3.1 63 23-97 37-99 (124)
278 2dnl_A Cytoplasmic polyadenyla 99.2 3.3E-11 1.1E-15 90.5 6.7 62 22-95 8-72 (114)
279 2cq3_A RNA-binding protein 9; 99.2 2.5E-11 8.5E-16 89.2 5.8 65 20-97 13-77 (103)
280 2cpy_A RNA-binding protein 12; 99.2 2.1E-11 7.1E-16 91.6 5.4 64 21-97 14-78 (114)
281 2do0_A HnRNP M, heterogeneous 99.2 2.3E-11 8E-16 91.0 5.7 64 22-97 15-78 (114)
282 2dgv_A HnRNP M, heterogeneous 99.2 3.9E-11 1.3E-15 86.2 6.6 63 22-97 8-70 (92)
283 2err_A Ataxin-2-binding protei 99.2 2.7E-11 9.2E-16 90.3 5.9 63 22-97 29-91 (109)
284 2dis_A Unnamed protein product 99.2 2.4E-11 8.1E-16 90.2 5.5 65 22-97 8-74 (109)
285 1x5o_A RNA binding motif, sing 99.2 2.6E-11 8.8E-16 90.8 5.7 63 23-97 26-88 (114)
286 2db1_A Heterogeneous nuclear r 99.2 2.3E-11 7.8E-16 92.0 5.4 63 22-97 17-82 (118)
287 2dgx_A KIAA0430 protein; RRM d 99.2 1.6E-11 5.4E-16 89.3 4.4 63 21-97 8-74 (96)
288 2d9p_A Polyadenylate-binding p 99.2 2.3E-11 7.9E-16 89.4 5.2 64 21-97 14-77 (103)
289 1wg5_A Heterogeneous nuclear r 99.2 2.6E-11 9.1E-16 89.5 5.6 63 22-97 15-78 (104)
290 3ulh_A THO complex subunit 4; 99.2 1.8E-11 6.1E-16 90.6 4.6 64 22-97 29-92 (107)
291 2dha_A FLJ20171 protein; RRM d 99.2 2.1E-11 7.3E-16 93.0 5.1 61 22-94 23-87 (123)
292 2nlw_A Eukaryotic translation 99.2 3.7E-11 1.3E-15 88.9 6.1 63 22-97 15-83 (105)
293 2cqi_A Nucleolysin TIAR; RNA r 99.2 2.7E-11 9.4E-16 89.0 5.3 64 21-97 14-77 (103)
294 2dng_A Eukaryotic translation 99.2 2.5E-11 8.7E-16 89.2 5.0 62 23-97 16-77 (103)
295 2hgl_A HNRPF protein, heteroge 99.2 1.8E-11 6.1E-16 95.1 4.3 62 23-97 45-109 (136)
296 1wi8_A EIF-4B, eukaryotic tran 99.2 3.3E-11 1.1E-15 88.8 5.3 62 23-97 16-78 (104)
297 1wex_A Hypothetical protein (r 99.1 3.1E-11 1.1E-15 89.4 5.1 59 22-97 15-73 (104)
298 1wez_A HnRNP H', FTP-3, hetero 99.1 3E-11 1E-15 89.0 4.9 61 23-97 16-76 (102)
299 1x4a_A Splicing factor, argini 99.1 5.7E-11 1.9E-15 88.3 6.2 63 21-97 21-83 (109)
300 1x4b_A Heterogeneous nuclear r 99.1 2.7E-11 9.2E-16 91.1 4.5 61 23-94 28-88 (116)
301 2j76_E EIF-4B, EIF4B, eukaryot 99.1 1.8E-11 6.3E-16 89.7 3.2 63 22-97 19-82 (100)
302 2xs2_A Deleted in azoospermia- 99.1 2.8E-11 9.6E-16 88.8 4.2 59 23-93 10-68 (102)
303 1h2v_Z 20 kDa nuclear CAP bind 99.1 4.1E-11 1.4E-15 94.8 5.5 65 22-97 39-103 (156)
304 3r27_A HnRNP L, heterogeneous 99.1 2.5E-11 8.7E-16 89.0 3.6 59 22-97 21-79 (100)
305 2dnr_A Synaptojanin-1; RRM dom 99.1 2.6E-10 9E-15 81.3 8.7 72 115-192 6-85 (91)
306 2j8a_A Histone-lysine N-methyl 99.1 4E-11 1.4E-15 91.3 4.6 66 25-97 5-80 (136)
307 2hgn_A Heterogeneous nuclear r 99.1 3.9E-11 1.3E-15 93.5 4.7 61 23-97 47-107 (139)
308 3q2s_C Cleavage and polyadenyl 99.1 3.9E-11 1.3E-15 101.3 4.9 63 24-97 70-134 (229)
309 2lmi_A GRSF-1, G-rich sequence 99.1 4.3E-11 1.5E-15 88.8 4.5 63 22-97 11-76 (107)
310 2dnn_A RNA-binding protein 12; 99.1 3.8E-11 1.3E-15 89.6 3.9 60 24-97 18-77 (109)
311 2cq2_A Hypothetical protein LO 99.1 5.4E-11 1.9E-15 89.3 4.6 59 23-98 26-86 (114)
312 2cpi_A CCR4-NOT transcription 99.1 4.4E-11 1.5E-15 89.4 4.0 65 22-97 15-85 (111)
313 1x4d_A Matrin 3; structural ge 99.1 2.4E-11 8.1E-16 89.7 2.4 58 23-97 16-74 (102)
314 2ad9_A Polypyrimidine tract-bi 99.1 6.6E-11 2.3E-15 89.6 4.6 57 23-96 32-88 (119)
315 2ki2_A SS-DNA binding protein 99.1 4.3E-11 1.5E-15 85.7 3.3 61 25-97 4-64 (90)
316 1wel_A RNA-binding protein 12; 99.1 4.1E-11 1.4E-15 91.3 3.2 63 23-97 26-88 (124)
317 2dgw_A Probable RNA-binding pr 99.1 1.2E-10 4.1E-15 83.6 5.3 62 22-97 10-71 (91)
318 2fc9_A NCL protein; structure 99.1 1.2E-10 4.2E-15 85.2 5.1 62 21-97 14-75 (101)
319 2a3j_A U1 small nuclear ribonu 99.1 1.2E-10 4E-15 89.3 5.1 62 22-97 29-94 (127)
320 1rk8_A CG8781-PA, CG8781-PA pr 99.1 8.8E-11 3E-15 93.9 4.4 64 23-97 73-136 (165)
321 2cq1_A PTB-like protein L; RRM 99.1 9.5E-11 3.2E-15 86.3 4.0 57 23-96 16-72 (101)
322 1x4f_A Matrin 3; structural ge 99.0 7.5E-11 2.6E-15 88.4 3.3 58 23-97 26-84 (112)
323 2cpj_A Non-POU domain-containi 99.0 2.4E-10 8.3E-15 83.3 5.7 59 22-97 15-73 (99)
324 2lcw_A RNA-binding protein FUS 98.6 2.2E-11 7.6E-16 91.6 0.0 65 22-97 7-79 (116)
325 2ytc_A PRE-mRNA-splicing facto 99.0 2.7E-10 9.4E-15 80.5 5.5 58 21-95 11-68 (85)
326 1fj7_A Nucleolin RBD1, protein 99.0 3.4E-11 1.2E-15 88.1 0.7 63 22-97 17-79 (101)
327 2jvr_A Nucleolar protein 3; RN 99.0 1.6E-10 5.5E-15 86.5 4.2 61 22-97 28-89 (111)
328 3d2w_A TAR DNA-binding protein 99.0 1.8E-10 6.2E-15 82.6 4.4 53 22-90 11-63 (89)
329 1whx_A Hypothetical protein ri 99.0 1.3E-10 4.4E-15 86.9 3.6 58 23-97 11-68 (111)
330 2la4_A Nuclear and cytoplasmic 99.0 2.9E-10 9.9E-15 83.1 5.5 59 22-97 27-85 (101)
331 1why_A Hypothetical protein ri 99.0 3.4E-10 1.2E-14 82.2 5.7 59 22-97 17-75 (97)
332 1x4c_A Splicing factor, argini 99.0 3E-10 1E-14 84.3 5.4 58 22-97 15-72 (108)
333 3zzy_A Polypyrimidine tract-bi 99.0 1.4E-10 4.7E-15 89.1 3.6 58 24-97 30-88 (130)
334 1sjr_A Polypyrimidine tract-bi 99.0 1.6E-10 5.3E-15 92.1 3.9 59 24-97 48-106 (164)
335 2jvo_A Nucleolar protein 3; nu 99.0 2.8E-10 9.6E-15 84.6 5.1 58 21-97 30-87 (108)
336 2f3j_A RNA and export factor b 99.0 2.9E-10 1E-14 92.1 5.0 63 23-97 89-151 (177)
337 2e5j_A Methenyltetrahydrofolat 99.0 3.2E-10 1.1E-14 82.4 4.7 60 22-97 19-78 (97)
338 1owx_A Lupus LA protein, SS-B, 99.0 1.1E-09 3.8E-14 82.8 7.8 71 115-189 17-92 (121)
339 2dnq_A RNA-binding protein 4B; 99.0 3.4E-10 1.2E-14 81.0 4.5 56 23-97 9-64 (90)
340 2dgu_A Heterogeneous nuclear r 99.0 4.2E-10 1.4E-14 82.7 4.6 58 21-97 10-67 (103)
341 2cpx_A Hypothetical protein FL 99.0 1.6E-10 5.4E-15 86.6 2.2 65 22-97 25-89 (115)
342 1nu4_A U1A RNA binding domain; 99.0 2.1E-10 7.1E-15 83.2 2.4 62 22-97 8-73 (97)
343 1x4g_A Nucleolysin TIAR; struc 99.0 4.5E-10 1.6E-14 83.4 4.3 60 21-97 24-83 (109)
344 3v4m_A Splicing factor U2AF 65 98.9 6.1E-10 2.1E-14 82.5 4.9 59 28-97 21-81 (105)
345 1ufw_A Synaptojanin 2; RNP dom 98.9 8.9E-10 3.1E-14 79.0 5.2 71 115-191 14-93 (95)
346 2fc8_A NCL protein; structure 98.9 9E-10 3.1E-14 80.6 5.4 63 21-97 14-76 (102)
347 1wf1_A RNA-binding protein RAL 98.9 1.2E-09 4.2E-14 81.1 6.2 56 23-97 28-84 (110)
348 1jmt_A Splicing factor U2AF 35 98.9 6E-10 2.1E-14 82.3 4.5 58 28-97 21-90 (104)
349 2pe8_A Splicing factor 45; RRM 98.9 8.3E-10 2.8E-14 81.7 5.1 53 34-97 25-78 (105)
350 3pgw_S U1-70K; protein-RNA com 98.9 6.6E-10 2.3E-14 102.2 5.6 64 23-97 103-166 (437)
351 2dnp_A RNA-binding protein 14; 98.9 7.4E-10 2.5E-14 79.2 4.7 58 21-97 8-65 (90)
352 2kvi_A Nuclear polyadenylated 98.9 7.5E-10 2.6E-14 80.3 4.1 56 23-97 11-67 (96)
353 3egn_A RNA-binding protein 40; 98.9 3.7E-10 1.3E-14 88.0 2.4 65 22-97 45-114 (143)
354 2e44_A Insulin-like growth fac 98.9 1.4E-09 4.6E-14 78.7 5.2 61 22-97 15-76 (96)
355 1wf0_A TDP-43, TAR DNA-binding 98.9 7E-10 2.4E-14 79.0 3.6 54 22-91 5-58 (88)
356 3beg_B Splicing factor, argini 98.9 6.5E-10 2.2E-14 83.5 3.6 58 22-97 16-73 (115)
357 2dgt_A RNA-binding protein 30; 98.9 1.1E-09 3.6E-14 78.7 4.5 57 22-97 10-66 (92)
358 2cqh_A IGF-II mRNA-binding pro 98.9 9.6E-10 3.3E-14 79.1 4.0 58 22-97 8-66 (93)
359 2xnq_A Nuclear polyadenylated 98.9 1.3E-09 4.5E-14 79.3 4.8 57 22-97 22-79 (97)
360 2e5i_A Heterogeneous nuclear r 98.9 1.2E-09 4.1E-14 83.3 4.5 56 25-97 28-84 (124)
361 2voo_A Lupus LA protein; RNA-b 98.9 1.3E-09 4.3E-14 89.5 4.4 62 23-96 110-171 (193)
362 1x5p_A Negative elongation fac 98.9 2.2E-09 7.5E-14 77.9 5.2 57 22-97 15-71 (97)
363 2d9o_A DNAJ (HSP40) homolog, s 98.9 1.8E-09 6.3E-14 79.1 4.7 51 31-97 26-76 (100)
364 2e5g_A U6 snRNA-specific termi 98.9 2.4E-09 8.4E-14 77.2 5.3 58 23-97 9-66 (94)
365 1fjc_A Nucleolin RBD2, protein 98.9 5.7E-10 2E-14 80.7 1.6 60 22-97 16-75 (96)
366 1wg1_A KIAA1579 protein, homol 98.8 2.3E-09 7.8E-14 76.4 4.7 58 22-97 5-62 (88)
367 2cpd_A Apobec-1 stimulating pr 98.8 3.5E-09 1.2E-13 77.0 5.2 57 22-97 15-73 (99)
368 2hzc_A Splicing factor U2AF 65 98.8 2.2E-09 7.6E-14 76.0 4.0 57 23-97 7-74 (87)
369 2bz2_A Negative elongation fac 98.8 4.1E-09 1.4E-13 79.9 4.8 58 21-97 38-95 (121)
370 3tht_A Alkylated DNA repair pr 98.7 8.5E-09 2.9E-13 91.7 5.4 59 22-97 18-78 (345)
371 3ue2_A Poly(U)-binding-splicin 98.7 5.2E-09 1.8E-13 79.1 3.4 52 35-97 38-93 (118)
372 3dxb_A Thioredoxin N-terminall 98.7 2E-08 6.8E-13 83.8 7.1 64 127-190 140-210 (222)
373 3u1l_A PRE-mRNA-splicing facto 98.7 9.5E-09 3.2E-13 86.9 5.0 62 21-99 133-203 (240)
374 3s6e_A RNA-binding protein 39; 98.6 3.4E-08 1.1E-12 74.1 4.9 51 32-97 27-77 (114)
375 2dit_A HIV TAT specific factor 98.6 4.1E-08 1.4E-12 73.1 5.3 49 34-97 38-86 (112)
376 2l9w_A U4/U6 snRNA-associated- 98.6 3.7E-07 1.3E-11 66.8 9.3 72 114-189 19-96 (117)
377 2diu_A KIAA0430 protein; struc 98.6 4.7E-08 1.6E-12 70.3 4.5 52 25-97 12-68 (96)
378 2dhx_A Poly (ADP-ribose) polym 98.2 1.5E-05 5E-10 57.8 10.3 88 115-226 7-99 (104)
379 1owx_A Lupus LA protein, SS-B, 98.2 1.8E-06 6.3E-11 65.0 5.4 64 24-104 20-85 (121)
380 3dxb_A Thioredoxin N-terminall 98.1 2.3E-06 7.8E-11 71.1 5.2 54 33-97 140-197 (222)
381 2dnr_A Synaptojanin-1; RRM dom 97.7 6.1E-05 2.1E-09 53.5 5.1 42 36-97 29-70 (91)
382 1wey_A Calcipressin 1; structu 97.5 0.00031 1.1E-08 51.0 6.7 73 115-191 4-82 (104)
383 1uw4_A UPF3X; nonsense mediate 97.2 0.0016 5.4E-08 46.3 8.1 66 117-182 2-72 (91)
384 1ufw_A Synaptojanin 2; RNP dom 97.2 0.00029 1E-08 50.3 3.6 41 37-97 39-79 (95)
385 1wwh_A Nucleoporin 35, nucleop 97.1 0.0033 1.1E-07 46.7 9.1 71 115-190 23-94 (119)
386 1whv_A Poly(A)-specific ribonu 97.0 0.0018 6.1E-08 46.3 6.6 53 115-174 15-67 (100)
387 3p3d_A Nucleoporin 53; structu 96.4 0.0039 1.3E-07 47.1 4.7 73 117-190 8-96 (132)
388 3pq1_A Poly(A) RNA polymerase; 96.2 0.0024 8.3E-08 58.6 3.5 62 115-180 52-113 (464)
389 3ctr_A Poly(A)-specific ribonu 96.2 0.0038 1.3E-07 44.7 3.6 53 118-176 7-60 (101)
390 2l08_A Regulator of nonsense t 95.9 0.0096 3.3E-07 42.6 4.6 67 116-182 9-80 (97)
391 2dhx_A Poly (ADP-ribose) polym 94.6 0.079 2.7E-06 38.2 6.0 43 212-254 7-52 (104)
392 1whv_A Poly(A)-specific ribonu 93.6 0.062 2.1E-06 38.3 3.6 48 29-95 22-69 (100)
393 3ctr_A Poly(A)-specific ribonu 93.1 0.065 2.2E-06 38.3 3.1 49 29-96 12-60 (101)
394 2l9w_A U4/U6 snRNA-associated- 92.9 0.15 5E-06 37.2 4.7 57 24-97 23-84 (117)
395 1wwh_A Nucleoporin 35, nucleop 91.2 0.25 8.5E-06 36.6 4.3 43 35-94 36-78 (119)
396 3pq1_A Poly(A) RNA polymerase; 88.9 0.18 6.1E-06 46.2 2.4 44 30-85 60-103 (464)
397 1uw4_A UPF3X; nonsense mediate 85.6 1.8 6.2E-05 30.3 5.6 62 27-97 6-67 (91)
398 3p3d_A Nucleoporin 53; structu 83.8 0.85 2.9E-05 34.3 3.3 56 35-94 19-81 (132)
399 3d45_A Poly(A)-specific ribonu 82.7 3.1 0.00011 38.5 7.4 53 117-176 441-494 (507)
400 1wey_A Calcipressin 1; structu 81.5 3.2 0.00011 29.8 5.5 45 36-97 24-68 (104)
401 2l08_A Regulator of nonsense t 64.7 2.1 7.1E-05 30.4 1.0 25 213-237 9-33 (97)
402 4e8u_A Putative uncharacterize 49.8 29 0.00098 27.1 5.3 56 118-174 14-81 (172)
403 2g0c_A ATP-dependent RNA helic 37.4 75 0.0026 20.4 5.3 58 126-190 11-74 (76)
404 3d45_A Poly(A)-specific ribonu 35.0 43 0.0015 30.7 4.9 46 32-96 449-494 (507)
405 4aj5_1 SKA3, spindle and kinet 24.6 27 0.00093 24.6 1.2 16 32-47 86-101 (101)
406 2kjw_A TS9, 30S ribosomal prot 23.7 62 0.0021 22.5 3.0 68 158-247 7-84 (96)
407 1ytr_A Bacteriocin plantaricin 21.8 48 0.0016 16.6 1.5 12 36-47 14-25 (26)
408 3ts2_A Protein LIN-28 homolog 21.6 16 0.00056 27.7 -0.5 28 131-164 2-29 (148)
No 1
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=1.2e-33 Score=247.37 Aligned_cols=204 Identities=12% Similarity=0.176 Sum_probs=162.6
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccCCCcC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKR 101 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~g~~~ 101 (264)
+.+..+.||+.++|+++|+++|++||+|.+|+++++..+ ++ |||||+|.+.+ +|.+|+. +++ ..
T Consensus 41 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~-------g~afV~f~~~~----~A~~A~~-~~~-~~- 104 (292)
T 2ghp_A 41 LTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK--NF-------RFARIEFARYD----GALAAIT-KTH-KV- 104 (292)
T ss_dssp -CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS--SS-------EEEEEEESSHH----HHHHHHT-TTT-CE-
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC--Cc-------EEEEEEECCHH----HHHHHHH-hCC-cE-
Confidence 347799999999999999999999999999999998755 46 99999999999 8888884 654 11
Q ss_pred CCCcchhcccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEEecCCC-CCceEEEEEecCHHHHHHHH-HhCCc
Q 024698 102 LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCG-QVVDCRVCGDPH-SVLRFAFVEFADEHGARAAL-NLGGT 178 (264)
Q Consensus 102 ~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al-~ln~~ 178 (264)
+.++..... ....++|||+|||+.+|+++|+++|++|| .|..|+++.++. .++|||||+|.+.++|.+|+ .|||.
T Consensus 105 ~~g~~i~v~--~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 182 (292)
T 2ghp_A 105 VGQNEIIVS--HLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGL 182 (292)
T ss_dssp ETTEECEEE--ECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTC
T ss_pred eCCcEEEEE--ECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 111111111 12478999999999999999999999999 999999988775 47899999999999999999 69999
Q ss_pred eeCCeeEEEeeCCCCCCCCCCCCCCCChhhhcCCCCeEEEcCCCCC-CCHHHHHHHHhhcCCCceEEEEeecccc
Q 024698 179 MLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKK-VPQAEVKQFFEAACGGEVRTLPCMIILF 252 (264)
Q Consensus 179 ~~~g~~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~nL~~~-~te~~L~~~F~~~~gG~I~~v~l~~d~~ 252 (264)
.+.|+.|.|.++.+...... . .......++|||+|||++ +++++|+++|++| |.|.+|+|+.|..
T Consensus 183 ~~~g~~l~v~~a~~~~~~~~------~-~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~--G~v~~v~i~~~~~ 248 (292)
T 2ghp_A 183 KIEGYTLVTKVSNPLEKSKR------T-DSATLEGREIMIRNLSTELLDENLLRESFEGF--GSIEKINIPAGQK 248 (292)
T ss_dssp EETTEECEEEECCCC----------------CCTTTEEEEEEECTTTCCHHHHHHHHGGG--SCEEEEECCSCCC
T ss_pred EeCCcEEEEEECCCCccccc------c-cccCCCCceEEEECCCcccCCHHHHHHHHhcc--CCeeEEEEEecCC
Confidence 99999999999764321110 0 012236789999999999 9999999999999 9999999998753
No 2
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=1.6e-33 Score=245.73 Aligned_cols=195 Identities=16% Similarity=0.178 Sum_probs=163.2
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccCCCcC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKR 101 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~g~~~ 101 (264)
+.+..+.||+.++|+++|+++|++|| |.+|++ ++++ |||||+|.+.+ +|.+|+..+++-.
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~-------g~afV~f~~~~----~A~~A~~~l~~~~-- 81 (284)
T 3smz_A 22 RRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYK-------GTAFVTLLNGE----QAEAAINAFHQSR-- 81 (284)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTT-------TEEEEEESSHH----HHHHHHHHHTTCE--
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCC-------CEEEEEeCCHH----HHHHHHHHcCCCe--
Confidence 34689999999999999999999999 999988 3566 99999999999 8888888887621
Q ss_pred CCCcchhcccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCc
Q 024698 102 LSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGT 178 (264)
Q Consensus 102 ~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~ 178 (264)
+.++...... ....++|||+|||+++|+++|+++|++||.|..++++.++. .++|||||+|.+.++|.+|+ .|||.
T Consensus 82 ~~g~~i~v~~-~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~ 160 (284)
T 3smz_A 82 LRERELSVQL-QPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGK 160 (284)
T ss_dssp ETTEECEEEE-CCCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred eCCeEEEEEe-cCCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCC
Confidence 1111111111 12457899999999999999999999999999999998865 47899999999999999999 89999
Q ss_pred eeCCeeEEEeeCCCCCCCCCCCCCCCChhhhcCCCCeEEEcCCCCCC-CHHHHHHHHhhcCCCceEEEEeecc
Q 024698 179 MLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKV-PQAEVKQFFEAACGGEVRTLPCMII 250 (264)
Q Consensus 179 ~~~g~~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~nL~~~~-te~~L~~~F~~~~gG~I~~v~l~~d 250 (264)
.+.|+.|.|.++...... ......++|||+|||+++ ++++|+++|++| |.|.+++|+.|
T Consensus 161 ~~~g~~i~v~~a~~~~~~-----------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~--G~i~~v~i~~~ 220 (284)
T 3smz_A 161 PLGPRTLYVHWTDAGQLT-----------PALLHSRCLCVDRLPPGFNDVDALCRALSAV--HSPTFCQLACG 220 (284)
T ss_dssp EETTEECEEEECCGGGCC-----------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSS--SCCSEEEEEEC
T ss_pred EeCCcEEEEEECCCCCCC-----------cccCCccEEEEecCCcccCCHHHHHHHhhCC--CCeEEEEEEEC
Confidence 999999999997543211 112257899999999996 999999999999 89999999987
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.97 E-value=2.6e-32 Score=229.06 Aligned_cols=158 Identities=20% Similarity=0.292 Sum_probs=135.9
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC----C
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ----G 98 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~----g 98 (264)
.++++.||++++|+++|+++|++||+|.+|+|+++..+++++ |||||+|.+.+ +|.+|+..+++ |
T Consensus 16 ~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~-------G~afV~F~~~~----~A~~Ai~~~~~~~~~g 84 (213)
T 4f02_A 16 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSL-------GYAYVNFQQPA----DAERALDTMNFDVIKG 84 (213)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEE-------EEEEEEESSHH----HHHHHHHHHTTCEETT
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCcc-------ccccceeCCHH----HHHHHHHHhhhhhcCC
Confidence 478999999999999999999999999999999999998999 99999999999 88888888876 2
Q ss_pred Cc-CCCCcchhcccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhC
Q 024698 99 RK-RLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLG 176 (264)
Q Consensus 99 ~~-~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln 176 (264)
+. +................+|||+|||+.+|+++|+++|++||.|..|+|+.|..+++|||||+|.+.++|.+|+ .||
T Consensus 85 ~~i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~ln 164 (213)
T 4f02_A 85 KPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMN 164 (213)
T ss_dssp EECEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred cccccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhC
Confidence 22 1110001111111245689999999999999999999999999999999998878999999999999999999 799
Q ss_pred CceeCCeeEEEeeCC
Q 024698 177 GTMLGYYPVRVLPSK 191 (264)
Q Consensus 177 ~~~~~g~~i~V~~~~ 191 (264)
|..+.|++|+|.+++
T Consensus 165 g~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 165 GMLLNDRKVFVGRFK 179 (213)
T ss_dssp TCEETTEECEEEECC
T ss_pred CCEECCEEEEEEEcC
Confidence 999999999999864
No 4
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.97 E-value=2.5e-30 Score=215.97 Aligned_cols=162 Identities=15% Similarity=0.232 Sum_probs=134.6
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC----
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ---- 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~---- 97 (264)
..+..+.||+.++|+++|+++|++||+|.+|+++++..+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~-------g~afV~f~~~~----~A~~A~~~l~~~~~~ 96 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHK-------GFAFVEYEVPE----AAQLALEQMNSVMLG 96 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCC-------SEEEEEESSHH----HHHHHHHHHSSCCCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccC-------ceEEEEeCCHH----HHHHHHHHccCCeeC
Confidence 3478999999999999999999999999999999999888888 99999999999 88888887776
Q ss_pred CCc-CCCCcchhc---------ccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecC
Q 024698 98 GRK-RLSGRAFRA---------QREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFAD 165 (264)
Q Consensus 98 g~~-~~~~~~~~~---------~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~ 165 (264)
|+. ++....... .......++|||+|||+++|+++|+++|++||.|..++++.++. .++|||||+|.+
T Consensus 97 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~ 176 (216)
T 2qfj_A 97 GRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEK 176 (216)
T ss_dssp -CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESS
T ss_pred CeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecC
Confidence 222 111100000 01123567899999999999999999999999999999998864 478999999999
Q ss_pred HHHHHHHH-HhCCceeCCeeEEEeeCCCCC
Q 024698 166 EHGARAAL-NLGGTMLGYYPVRVLPSKTAI 194 (264)
Q Consensus 166 ~e~a~~Al-~ln~~~~~g~~i~V~~~~~~~ 194 (264)
.++|.+|+ .|||..+.|+.|+|.++....
T Consensus 177 ~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 177 AQSSQDAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HHHHHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred HHHHHHHHHHccCCEeCCcEEEEEEecCCC
Confidence 99999999 799999999999999987553
No 5
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.4e-30 Score=204.12 Aligned_cols=155 Identities=18% Similarity=0.210 Sum_probs=131.3
Q ss_pred cccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC----CCc
Q 024698 25 LETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ----GRK 100 (264)
Q Consensus 25 ~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~----g~~ 100 (264)
....||+.++|+++|+++|++||+|.+|++++++.+ +++ |||||+|.+.+ +|.+|+..+++ |+.
T Consensus 3 l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~-~~~-------g~afV~f~~~~----~a~~A~~~l~~~~~~g~~ 70 (166)
T 3md3_A 3 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNN-KNV-------NYAFVEYHQSH----DANIALQTLNGKQIENNI 70 (166)
T ss_dssp EEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCE-------EEEEEEESSHH----HHHHHHHHHTTCEETTEE
T ss_pred EEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCC-CCC-------CEEEEEeCCHH----HHHHHHHHcCCCccCCCe
Confidence 567899999999999999999999999999999864 788 99999999999 88888888876 222
Q ss_pred -CCCCcchhcccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhC
Q 024698 101 -RLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLG 176 (264)
Q Consensus 101 -~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln 176 (264)
++..............++|||+|||+.+|+++|+++|++||.|..+.++.++. .++|||||+|.+.++|.+|+ .||
T Consensus 71 i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 150 (166)
T 3md3_A 71 VKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ 150 (166)
T ss_dssp CEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence 11111111222334567899999999999999999999999999999998865 47899999999999999999 799
Q ss_pred CceeCCeeEEEeeCC
Q 024698 177 GTMLGYYPVRVLPSK 191 (264)
Q Consensus 177 ~~~~~g~~i~V~~~~ 191 (264)
|..+.|++|+|.+++
T Consensus 151 g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 151 GQDLNGRPLRINWAA 165 (166)
T ss_dssp TCEETTEECEEEESC
T ss_pred CCccCCcEEEEEecC
Confidence 999999999999874
No 6
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.97 E-value=7.3e-30 Score=204.90 Aligned_cols=158 Identities=22% Similarity=0.301 Sum_probs=135.1
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC---C
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ---G 98 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~---g 98 (264)
+......||+.++|+++|+++|++||+|.+|++++++.+++++ |||||+|.+.+ +|.+|+..+++ +
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~-------g~afV~f~~~~----~A~~a~~~l~~~~~~ 71 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSY-------GYAFVDFTSEM----DSQRAIKVLNGITVR 71 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEEC-------SEEEEEESSHH----HHHHHHHHHTTCEET
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccc-------eEEEEEECCHH----HHHHHHHhcCCCEeC
Confidence 4568899999999999999999999999999999998888899 99999999999 88888888776 2
Q ss_pred CcCCCCcchhcccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-Hh
Q 024698 99 RKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NL 175 (264)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~l 175 (264)
.+.+..............++|||+|||+.+|+++|+++|++||.|..+++..++. .++|||||+|.+.++|.+|+ .|
T Consensus 72 g~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 151 (168)
T 1b7f_A 72 NKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 151 (168)
T ss_dssp TEECEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 2222222222223344678999999999999999999999999999999998874 47899999999999999999 79
Q ss_pred CCceeCC--eeEEEeeC
Q 024698 176 GGTMLGY--YPVRVLPS 190 (264)
Q Consensus 176 n~~~~~g--~~i~V~~~ 190 (264)
||..+.| ++|+|.++
T Consensus 152 ~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 152 NNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TTCCCTTCSSCCEEEEC
T ss_pred cCCEecCCCeEEEEEeC
Confidence 9999988 99999874
No 7
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.96 E-value=2.2e-30 Score=207.97 Aligned_cols=156 Identities=11% Similarity=0.142 Sum_probs=131.1
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhh---ccCCC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNN---FNQGR 99 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~---~~~g~ 99 (264)
.+....||+.++|+++|+++|++||+|.+|+++++..+++++ |||||+|.+.+ +|.+|+.. ++ |+
T Consensus 4 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~-------g~afV~f~~~~----~a~~A~~~~~~~~-g~ 71 (167)
T 2cjk_A 4 CKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSR-------GFGFLSFEKPS----SVDEVVKTQHILD-GK 71 (167)
T ss_dssp GEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCC-------SCEEEEESSTH----HHHHHHHSCCEET-TE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCcc-------ceEEEEEccHH----HHHHHHhcccccC-Ce
Confidence 356789999999999999999999999999999999888999 99999999999 77777765 22 22
Q ss_pred cCCCCcchhcccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhCC
Q 024698 100 KRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAALNLGG 177 (264)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al~ln~ 177 (264)
. +..............++|||+|||+++|+++|+++|++||.|..+++..++. .++|||||+|.+.++|.+|+++++
T Consensus 72 ~-i~v~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~ 150 (167)
T 2cjk_A 72 V-IDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKF 150 (167)
T ss_dssp E-CCCEECCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSE
T ss_pred E-cccccccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCC
Confidence 2 1111111111112457899999999999999999999999999999998864 588999999999999999999999
Q ss_pred ceeCCeeEEEeeCC
Q 024698 178 TMLGYYPVRVLPSK 191 (264)
Q Consensus 178 ~~~~g~~i~V~~~~ 191 (264)
..+.|++|+|.++.
T Consensus 151 ~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 151 IDFKDRKIEIKRAE 164 (167)
T ss_dssp ECSSSSCEEEEECC
T ss_pred EEeCCeEEEEeecC
Confidence 99999999999965
No 8
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=3.3e-29 Score=206.11 Aligned_cols=159 Identities=15% Similarity=0.115 Sum_probs=130.9
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC----
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ---- 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~---- 97 (264)
..+..+.||+.++|+++|+++|++||+|.+|+++++..+++++ |||||+|.+.+ +|.+|+.. ++
T Consensus 13 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~-------g~afV~f~~~~----~A~~A~~~-~~~~~~ 80 (196)
T 1l3k_A 13 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSR-------GFGFVTYATVE----EVDAAMNA-RPHKVD 80 (196)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEE-------EEEEEEESSHH----HHHHHHHT-CSCEET
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCcc-------ceEEEEeCCHH----HHHHHHhc-CCCEEC
Confidence 3578999999999999999999999999999999999888999 99999999999 77788766 32
Q ss_pred CCc-CC--CCcch--hcccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHH
Q 024698 98 GRK-RL--SGRAF--RAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGAR 170 (264)
Q Consensus 98 g~~-~~--~~~~~--~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~ 170 (264)
|+. .+ ..... .........++|||+|||+++|+++|+++|++||.|..|+++.++. .++|||||+|.+.++|.
T Consensus 81 g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 160 (196)
T 1l3k_A 81 GRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVD 160 (196)
T ss_dssp TEECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred CEEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHH
Confidence 222 11 00000 0111222457899999999999999999999999999999999864 47899999999999999
Q ss_pred HHHHhCCceeCCeeEEEeeCCC
Q 024698 171 AALNLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 171 ~Al~ln~~~~~g~~i~V~~~~~ 192 (264)
+|++.++..+.|+.|.|.++.+
T Consensus 161 ~A~~~~~~~~~G~~i~v~~a~~ 182 (196)
T 1l3k_A 161 KIVIQKYHTVNGHNCEVRKALS 182 (196)
T ss_dssp HHHHCSCCEETTEECEEEECC-
T ss_pred HHHHhCCcEECCEEEEEEecCC
Confidence 9997689999999999999753
No 9
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.96 E-value=1.7e-29 Score=203.96 Aligned_cols=157 Identities=16% Similarity=0.192 Sum_probs=131.5
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCC--CccccccCCCceEEeccCCcccccchHHHHHhhccCCCc
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQH--TDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRK 100 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~--~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~g~~ 100 (264)
.+....||++++|+++|+++|++||+|.+|+++++..++ +++ |||||+|.+.+ +|.+|+..+++...
T Consensus 4 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~-------g~afV~f~~~~----~A~~A~~~l~~~~~ 72 (175)
T 3nmr_A 4 IKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSK-------GCCFVTFYTRK----AALEAQNALHNMKV 72 (175)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEE-------EEEEEEESSHH----HHHHHHHHHTTTCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcc-------eEEEEEECCHH----HHHHHHHHhcCcEE
Confidence 357889999999999999999999999999999999886 788 99999999999 78888887776211
Q ss_pred ------CCCCc-chhcccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHH
Q 024698 101 ------RLSGR-AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAA 172 (264)
Q Consensus 101 ------~~~~~-~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~~g~afV~f~~~e~a~~A 172 (264)
.+... ...........++|||+|||+.+|+++|+++|++||.|..++++.++. .++|||||+|.+.++|.+|
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A 152 (175)
T 3nmr_A 73 LPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTA 152 (175)
T ss_dssp CTTCSSCCEEEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHH
T ss_pred ccCCccceEEccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHH
Confidence 11111 111112233567899999999999999999999999999999998866 4789999999999999999
Q ss_pred H-HhCCceeC---CeeEEEeeC
Q 024698 173 L-NLGGTMLG---YYPVRVLPS 190 (264)
Q Consensus 173 l-~ln~~~~~---g~~i~V~~~ 190 (264)
+ .|||..+. |++|+|.++
T Consensus 153 ~~~l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 153 IKAMHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HHHHTTSCCCTTCSSCCEEEEC
T ss_pred HHHhcCCcccCCCCCCeEEEec
Confidence 9 89998776 499999985
No 10
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=4.1e-29 Score=199.97 Aligned_cols=157 Identities=17% Similarity=0.211 Sum_probs=131.9
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC---CC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ---GR 99 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~---g~ 99 (264)
.+....||+.++|+++|+++|++||+|.+++++++..+++++ |||||+|.+.+ +|.+|+..+++ +.
T Consensus 3 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~-------g~afV~f~~~~----~A~~a~~~l~~~~~~g 71 (167)
T 1fxl_A 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSL-------GYGFVNYIDPK----DAEKAINTLNGLRLQT 71 (167)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEE-------EEEEEEESSHH----HHHHHHHHHTTCEETT
T ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcce-------eEEEEEECCHH----HHHHHHHHcCCCccCC
Confidence 356889999999999999999999999999999999888999 99999999999 88888888876 22
Q ss_pred cCCCCcchhcccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhC
Q 024698 100 KRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLG 176 (264)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln 176 (264)
+.+..............++|||+|||+.+|+++|+++|++||.|..+++..++. .++|||||+|.+.++|.+|+ .||
T Consensus 72 ~~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 151 (167)
T 1fxl_A 72 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 151 (167)
T ss_dssp EECEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred ceEEEEecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhc
Confidence 211111111222233567899999999999999999999999999999998874 36899999999999999999 799
Q ss_pred CceeCCee--EEEeeC
Q 024698 177 GTMLGYYP--VRVLPS 190 (264)
Q Consensus 177 ~~~~~g~~--i~V~~~ 190 (264)
|..+.|+. |+|.++
T Consensus 152 g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 152 GQKPSGATEPITVKFA 167 (167)
T ss_dssp TCCCTTCSSCCEEEEC
T ss_pred CCccCCCccceEEEeC
Confidence 99999975 888763
No 11
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.94 E-value=4.7e-27 Score=189.31 Aligned_cols=149 Identities=19% Similarity=0.262 Sum_probs=123.0
Q ss_pred CCcccccccchhcHHHHHHHhhcc----C-------CccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHH
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKL----N-------PLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRR 91 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~----G-------~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a 91 (264)
.+....||+.++|+++|+++|++| | +|.++.+. +++ |||||+|.+.+ +|.+|
T Consensus 5 ~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~-------g~afV~f~~~~----~A~~A 67 (172)
T 2g4b_A 5 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDK-------NFAFLEFRSVD----ETTQA 67 (172)
T ss_dssp GEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTT-------TEEEEEESSHH----HHHHH
T ss_pred cEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCC-------CEEEEEeCCHH----HHHHH
Confidence 357889999999999999999999 6 66666654 345 99999999999 88888
Q ss_pred HhhccC----CCcCCCCcchhcccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecC
Q 024698 92 RNNFNQ----GRKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFAD 165 (264)
Q Consensus 92 ~~~~~~----g~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~ 165 (264)
+ .+++ |+. +..............++|||+|||+.+|+++|+++|++||+|..+++..++. .++|||||+|.+
T Consensus 68 ~-~~~~~~~~g~~-i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~ 145 (172)
T 2g4b_A 68 M-AFDGIIFQGQS-LKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVD 145 (172)
T ss_dssp G-GGTTCEETTEE-CEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESS
T ss_pred H-HhCCcEecCce-eeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCC
Confidence 8 7776 222 1111111222233468899999999999999999999999999999999864 478999999999
Q ss_pred HHHHHHHH-HhCCceeCCeeEEEeeC
Q 024698 166 EHGARAAL-NLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 166 ~e~a~~Al-~ln~~~~~g~~i~V~~~ 190 (264)
.++|.+|+ .|||..+.|+.|+|.++
T Consensus 146 ~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 146 INVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred HHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 99999999 79999999999999985
No 12
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.94 E-value=1e-27 Score=194.05 Aligned_cols=154 Identities=18% Similarity=0.188 Sum_probs=125.5
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC----
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ---- 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~---- 97 (264)
..+....||+.++|+++|+++|++||.+.. .++.+..+++++ |||||+|.+.+ +|.+|+ .+++
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~-------g~afV~f~~~~----~a~~A~-~l~g~~~~ 79 (175)
T 1fje_B 13 PFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNR-------KFGYVDFESAE----DLEKAL-ELTGLKVF 79 (175)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTT-------TEEEEEESSHH----HHHHHH-HGGGEEET
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccc-------cEEEEEECCHH----HHHHHH-hcCCCEeC
Confidence 347899999999999999999999999887 455566667888 99999999999 777888 4765
Q ss_pred CCc-CCCCcchhcccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-Hh
Q 024698 98 GRK-RLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NL 175 (264)
Q Consensus 98 g~~-~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~l 175 (264)
|+. ++..............++|||+|||+++|+++|+++|++||.|..+ .....++|||||+|.+.++|.+|+ .|
T Consensus 80 g~~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l 156 (175)
T 1fje_B 80 GNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEK 156 (175)
T ss_dssp TEEEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE---CSSSSCCSEEEEECSSHHHHHHHHHHH
T ss_pred CeEEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe---cCCCCCceEEEEEECCHHHHHHHHHHh
Confidence 333 2111111122233356789999999999999999999999998776 333468899999999999999999 79
Q ss_pred CCceeCCeeEEEeeCC
Q 024698 176 GGTMLGYYPVRVLPSK 191 (264)
Q Consensus 176 n~~~~~g~~i~V~~~~ 191 (264)
||..+.|+.|+|.+++
T Consensus 157 ~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 157 QGAEIDGRSVSLYYTG 172 (175)
T ss_dssp TEEEETTEEEEEEECS
T ss_pred CCCEECCeEEEEEecC
Confidence 9999999999999975
No 13
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.94 E-value=7.8e-27 Score=194.84 Aligned_cols=152 Identities=14% Similarity=0.125 Sum_probs=123.2
Q ss_pred CCCccccccc-chhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC---
Q 024698 22 NNNLETKKSE-SEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ--- 97 (264)
Q Consensus 22 ~~~~~~~~~~-~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~--- 97 (264)
+....++||+ .++|+++|+++|++||.|.+|+++++ +| |||||+|.+.+ +|.+|+..||+
T Consensus 4 ~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~-------g~afV~f~~~~----~A~~Ai~~lng~~~ 67 (205)
T 3tyt_A 4 SPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KP-------GAAMVEMADGY----AVDRAITHLNNNFM 67 (205)
T ss_dssp CSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----ST-------TCEEEEESSHH----HHHHHHHHHTTCEE
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CC-------CEEEEEECCHH----HHHHHHHHhCCCEE
Confidence 4568999999 89999999999999999999999875 25 99999999999 88899998887
Q ss_pred -CCc---CCCCc---chh------------------------------cccCCCCCCEEEEcCCCCCCCHHHHHHHhhcC
Q 024698 98 -GRK---RLSGR---AFR------------------------------AQREDSVRRTVYVSDIDQNITEERLAGLFSSC 140 (264)
Q Consensus 98 -g~~---~~~~~---~~~------------------------------~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~ 140 (264)
|+. ..+.. ..+ ........++|||+|||+++|+++|+++|++|
T Consensus 68 ~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~ 147 (205)
T 3tyt_A 68 FGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDEL 147 (205)
T ss_dssp TTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHH
T ss_pred CCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhc
Confidence 322 00000 000 00011235689999999999999999999999
Q ss_pred CCe--eEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCe----eEEEee
Q 024698 141 GQV--VDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYY----PVRVLP 189 (264)
Q Consensus 141 G~i--~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~----~i~V~~ 189 (264)
|.| ..+++..+...++|||||+|.+.++|.+|+ .|||..+.|+ ++.|.+
T Consensus 148 G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~ 203 (205)
T 3tyt_A 148 GVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKL 203 (205)
T ss_dssp TCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEE
T ss_pred CCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEe
Confidence 999 899998887656799999999999999999 8999999886 455543
No 14
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.94 E-value=1.7e-26 Score=201.17 Aligned_cols=159 Identities=14% Similarity=0.127 Sum_probs=135.0
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC----C
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ----G 98 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~----g 98 (264)
.+....||++++|+++|+++|++||+|.+++++.+..+++++ |||||+|.+.+ +|.+|+..+++ |
T Consensus 96 ~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~-------g~afV~f~~~~----~a~~A~~~l~~~~~~g 164 (284)
T 3smz_A 96 ALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSK-------GYGFAEYMKKD----SAARAKSDLLGKPLGP 164 (284)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEE-------EEEEEEESSHH----HHHHHHHHHTTCEETT
T ss_pred CEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccc-------eEEEEEECCHH----HHHHHHHHhCCCEeCC
Confidence 467899999999999999999999999999999999888999 99999999999 88888888876 2
Q ss_pred Cc-CCCCcc-hhcccCCCCCCEEEEcCCCCCC-CHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHH-
Q 024698 99 RK-RLSGRA-FRAQREDSVRRTVYVSDIDQNI-TEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAAL- 173 (264)
Q Consensus 99 ~~-~~~~~~-~~~~~~~~~~~~lfV~nLp~~~-te~~L~~~F~~~G~i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al- 173 (264)
+. .+.... ..........++|||+|||+.+ |+++|+++|++||.|..+++..++. .++|||||+|.+.++|.+|+
T Consensus 165 ~~i~v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~ 244 (284)
T 3smz_A 165 RTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQ 244 (284)
T ss_dssp EECEEEECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHH
T ss_pred cEEEEEECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHH
Confidence 22 111111 1111122356889999999995 9999999999999999999998876 47899999999999999999
Q ss_pred HhCCceeCCeeEEEeeCCC
Q 024698 174 NLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 174 ~ln~~~~~g~~i~V~~~~~ 192 (264)
.|||..+.|++|+|.++++
T Consensus 245 ~l~g~~~~g~~l~v~~a~~ 263 (284)
T 3smz_A 245 QADGLSLGGSHLRVSFCAP 263 (284)
T ss_dssp HHTTCEETTEECEEEECCS
T ss_pred HhCCCccCCeEEEEEEecC
Confidence 7999999999999999753
No 15
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.94 E-value=5.3e-27 Score=193.22 Aligned_cols=152 Identities=17% Similarity=0.255 Sum_probs=122.7
Q ss_pred CCcccccccchhcHHHHHHHhhccC-----------CccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHH
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLN-----------PLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRR 91 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G-----------~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a 91 (264)
.+..+.||+.++|+++|+++|++|| .|.++.+ ++++ |||||+|.+.+ +|.+|
T Consensus 5 ~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~-------g~afV~F~~~~----~A~~A 67 (198)
T 2yh0_A 5 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDK-------NFAFLEFRSVD----ETTQA 67 (198)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTT-------TEEEEEESCSH----HHHHH
T ss_pred eEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCC-------CEEEEEeCCHH----HHHHH
Confidence 4678999999999999999999995 4444443 3556 99999999999 88888
Q ss_pred HhhccC----CCc-CCCCcch------------------hcccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEE
Q 024698 92 RNNFNQ----GRK-RLSGRAF------------------RAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRV 148 (264)
Q Consensus 92 ~~~~~~----g~~-~~~~~~~------------------~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i 148 (264)
+ .+++ |+. ++..... .....+...++|||+|||+.+|+++|+++|++||.|..+++
T Consensus 68 l-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~ 146 (198)
T 2yh0_A 68 M-AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNL 146 (198)
T ss_dssp G-GGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEE
T ss_pred H-HhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEE
Confidence 8 7776 322 1100000 01111235688999999999999999999999999999999
Q ss_pred ecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCC
Q 024698 149 CGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 149 ~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~ 192 (264)
..++. .++|||||+|.+.++|.+|+ .|||..+.|+.|+|.++++
T Consensus 147 ~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 193 (198)
T 2yh0_A 147 VKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASV 193 (198)
T ss_dssp EECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred eecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 98864 47899999999999999999 7999999999999999764
No 16
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.94 E-value=4e-26 Score=198.60 Aligned_cols=153 Identities=15% Similarity=0.196 Sum_probs=126.3
Q ss_pred CCCcccccccchhcHHHHH----HHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLV----DMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~----~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
+.+..+.||++++|+++|+ ++|++||+|.+|++++ ++++| |||||+|.+.+ +|.+|+..+++
T Consensus 9 ~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~-------g~afV~f~~~~----~a~~A~~~l~g 74 (282)
T 3pgw_A 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMR-------GQAFVIFKEVS----SATNALRSMQG 74 (282)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcc-------eEEEEEECCHH----HHHHHHHHhcC
Confidence 4578999999999999977 9999999999999986 45778 99999999999 88888888876
Q ss_pred ----CCc-CCC--Ccchh--------------------------------------------------------------
Q 024698 98 ----GRK-RLS--GRAFR-------------------------------------------------------------- 108 (264)
Q Consensus 98 ----g~~-~~~--~~~~~-------------------------------------------------------------- 108 (264)
|+. ++. .....
T Consensus 75 ~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (282)
T 3pgw_A 75 FPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIM 154 (282)
T ss_pred CeeCCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCccccccccc
Confidence 222 000 00000
Q ss_pred ---------------------------------------------cccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCe
Q 024698 109 ---------------------------------------------AQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQV 143 (264)
Q Consensus 109 ---------------------------------------------~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i 143 (264)
........++|||+|||..+|+++|+++|++||.|
T Consensus 155 ~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i 234 (282)
T 3pgw_A 155 HHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGF 234 (282)
T ss_pred ccCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCe
Confidence 00111245779999999999999999999999999
Q ss_pred eEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeC-CeeEEEeeCC
Q 024698 144 VDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLG-YYPVRVLPSK 191 (264)
Q Consensus 144 ~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~-g~~i~V~~~~ 191 (264)
..|+++.++ +|||||+|.+.++|.+|+ .|||..+. |+.|+|.|++
T Consensus 235 ~~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 235 KEVRLVPGR---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EEEEEecCC---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 999998665 589999999999999999 79999999 9999999875
No 17
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.93 E-value=1e-25 Score=190.84 Aligned_cols=154 Identities=23% Similarity=0.203 Sum_probs=126.4
Q ss_pred CCCCcccccccc-hhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC--
Q 024698 21 KNNNLETKKSES-EFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ-- 97 (264)
Q Consensus 21 ~~~~~~~~~~~~-~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~-- 97 (264)
.+.+..+.||+. ++|+++|+++|++||+|.+|+++++. + |||||+|.+.+ +|.+|+..+++
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~-------g~afV~F~~~~----~A~~Ai~~l~g~~ 96 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----K-------ENALVQMADGN----QAQLAMSHLNGHK 96 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----S-------CCEEEEESCHH----HHHHHHHHHTTCB
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----C-------CEEEEEECCHH----HHHHHHHHhCCCe
Confidence 346789999999 99999999999999999999999875 4 99999999999 88888887776
Q ss_pred --CCc-CC--CCcc----hhc---------------------------ccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCC
Q 024698 98 --GRK-RL--SGRA----FRA---------------------------QREDSVRRTVYVSDIDQNITEERLAGLFSSCG 141 (264)
Q Consensus 98 --g~~-~~--~~~~----~~~---------------------------~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G 141 (264)
|+. ++ .... ... .......++|||+|||+.+|+++|+++|++||
T Consensus 97 ~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G 176 (229)
T 2adc_A 97 LHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNG 176 (229)
T ss_dssp CSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTS
T ss_pred ECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcC
Confidence 222 00 0000 000 00012357899999999999999999999999
Q ss_pred -CeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeC-CeeEEEeeCCCC
Q 024698 142 -QVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLG-YYPVRVLPSKTA 193 (264)
Q Consensus 142 -~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~-g~~i~V~~~~~~ 193 (264)
.|..++++.+ .+|||||+|.+.++|.+|+ .|||..+. |+.|+|.++++.
T Consensus 177 ~~i~~v~i~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 177 GVVKGFKFFQK---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CCEEEEEECSS---STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CCeeEEEEEEC---CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 9999999654 3689999999999999999 79999999 999999997653
No 18
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.93 E-value=1.8e-25 Score=187.31 Aligned_cols=123 Identities=25% Similarity=0.391 Sum_probs=108.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
..++|||+|||+++|+++|+++|++||+|.+|+|++|+. .++|||||+|.+.++|.+|+ .+|+..+.|+.|+|.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 467999999999999999999999999999999999876 47899999999999999999 899999999999999864
Q ss_pred CCCCCCCCCCCCCChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeeccc
Q 024698 192 TAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIIL 251 (264)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d~ 251 (264)
... ........+|||+|||+++++++|+++|++| |.|.+++|+.|.
T Consensus 94 ~~~------------~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~--G~i~~~~i~~d~ 139 (213)
T 4f02_A 94 RDP------------SLRKSGVGNIFIKNLDKSIDNKALYDTFSAF--GNILSCKVVCDE 139 (213)
T ss_dssp CCT------------HHHHHCTTEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEEET
T ss_pred ccc------------cccccccccceECCcccccHHHHHHHHHhhc--CCeEEEEeeccC
Confidence 211 1122256789999999999999999999999 999999999873
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.93 E-value=7.3e-26 Score=197.86 Aligned_cols=158 Identities=18% Similarity=0.246 Sum_probs=127.2
Q ss_pred CCcccccccchhcHHHHHHHhhccC-CccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC----
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLN-PLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ---- 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G-~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~---- 97 (264)
......||+.++|+++|+++|++|| +|.+|+++++.. ++++ |||||+|.+.+ +|.+|+..+++
T Consensus 118 ~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~-------g~afV~f~~~~----~a~~A~~~l~g~~~~ 185 (292)
T 2ghp_A 118 CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSR-------RFAYIDVTSKE----DARYCVEKLNGLKIE 185 (292)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------C-------CEEEEECSSHH----HHHHHHHHHTTCEET
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcc-------eEEEEEECCHH----HHHHHHHHhCCCEeC
Confidence 4678899999999999999999999 999999999887 4778 99999999999 88888888876
Q ss_pred CCc---CCCCcchhcc---cCCCCCCEEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEEecCCC---CCceEEEEEecCHH
Q 024698 98 GRK---RLSGRAFRAQ---REDSVRRTVYVSDIDQN-ITEERLAGLFSSCGQVVDCRVCGDPH---SVLRFAFVEFADEH 167 (264)
Q Consensus 98 g~~---~~~~~~~~~~---~~~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~v~i~~d~~---~~~g~afV~f~~~e 167 (264)
|+. ....+..... ......++|||+|||+. +|+++|+++|++||.|..|+++.+.. .++|||||+|.+.+
T Consensus 186 g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~ 265 (292)
T 2ghp_A 186 GYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKD 265 (292)
T ss_dssp TEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHH
T ss_pred CcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHH
Confidence 322 1111111111 12335688999999999 99999999999999999999998864 47899999999999
Q ss_pred HHHHHHHhCCceeCCeeEEEeeCCC
Q 024698 168 GARAALNLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 168 ~a~~Al~ln~~~~~g~~i~V~~~~~ 192 (264)
+|.+|+.|||..+.|++|+|.++++
T Consensus 266 ~A~~A~~l~g~~~~g~~i~V~~a~~ 290 (292)
T 2ghp_A 266 SAERALQMNRSLLGNREISVSLADK 290 (292)
T ss_dssp HHHHHGGGTTEEETTEEEEEEECCC
T ss_pred HHHHHHHhcCCEECCcEEEEEEecC
Confidence 9999999999999999999999753
No 20
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.93 E-value=2.7e-25 Score=182.68 Aligned_cols=129 Identities=19% Similarity=0.319 Sum_probs=109.2
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeC
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~ 190 (264)
+...++|||+|||+++|+++|+++|++||+|.+|+++.++. .++|||||+|.+.++|.+|+++++..+.|+.|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRA 89 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeeecc
Confidence 34678999999999999999999999999999999999875 3789999999999999999977999999999999997
Q ss_pred CCCCCCCCCCCCCCChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeeccc
Q 024698 191 KTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIIL 251 (264)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d~ 251 (264)
........ .......++|||+|||+++++++|+++|++| |.|.+++++.|.
T Consensus 90 ~~~~~~~~--------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~--G~i~~v~i~~~~ 140 (196)
T 1l3k_A 90 VSREDSQR--------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY--GKIEVIEIMTDR 140 (196)
T ss_dssp CC-------------------CCSEEEEECCTTTCCHHHHHHHHTTT--SCEEEEEEEECT
T ss_pred cCcccccc--------cccCCCcceEEEeCCCCCCCHHHHHHHHhcC--CCeEEEEEeecC
Confidence 54321110 1112256899999999999999999999999 899999999874
No 21
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.93 E-value=8.1e-26 Score=186.66 Aligned_cols=152 Identities=23% Similarity=0.204 Sum_probs=124.8
Q ss_pred CCcccccccc-hhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC----
Q 024698 23 NNLETKKSES-EFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ---- 97 (264)
Q Consensus 23 ~~~~~~~~~~-~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~---- 97 (264)
......||+. ++|+++|+++|++||+|.+|+++++. + |||||+|.+.+ +|.+|+..+++
T Consensus 4 ~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~-------g~afV~f~~~~----~a~~A~~~l~~~~~~ 67 (198)
T 1qm9_A 4 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----K-------ENALVQMADGN----QAQLAMSHLNGHKLH 67 (198)
T ss_dssp CEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----S-------SCCEEECTTTH----HHHHHHHHHTTCCCS
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----C-------CEEEEEECCHH----HHHHHHHHhCCCeec
Confidence 4678899999 99999999999999999999999875 4 99999999999 88888887776
Q ss_pred CCc-CC--CCcc----hhc---------------------------ccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCC-C
Q 024698 98 GRK-RL--SGRA----FRA---------------------------QREDSVRRTVYVSDIDQNITEERLAGLFSSCG-Q 142 (264)
Q Consensus 98 g~~-~~--~~~~----~~~---------------------------~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G-~ 142 (264)
|+. ++ .... ... .......++|||+|||+.+|+++|+++|++|| .
T Consensus 68 g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~ 147 (198)
T 1qm9_A 68 GKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGV 147 (198)
T ss_dssp SCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSC
T ss_pred CeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCC
Confidence 222 00 0000 000 00012367899999999999999999999999 9
Q ss_pred eeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeC-CeeEEEeeCCCC
Q 024698 143 VVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLG-YYPVRVLPSKTA 193 (264)
Q Consensus 143 i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~-g~~i~V~~~~~~ 193 (264)
|..+++..+. +|+|||+|.+.++|.+|+ .|||..+. |+.|+|.+++++
T Consensus 148 v~~v~i~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 148 VKGFKFFQKD---RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp CCEEEESSTT---SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred ceEEEEEeCC---CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 9999997653 689999999999999999 79999999 999999997643
No 22
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3.6e-25 Score=176.72 Aligned_cols=120 Identities=21% Similarity=0.320 Sum_probs=108.3
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCCCC
Q 024698 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAI 194 (264)
Q Consensus 117 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~~~ 194 (264)
|+|||+|||+++|+++|+++|++||+|.+++++.++. .++|||||+|.+.++|.+|+ .+||..+.|+.|+|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 6899999999999999999999999999999998876 57899999999999999999 899999999999999975332
Q ss_pred CCCCCCCCCCChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeecc
Q 024698 195 LPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMII 250 (264)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d 250 (264)
. .......+|||+|||+++++++|+++|++| |.|.++.++.|
T Consensus 81 ~------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~--G~i~~~~i~~~ 122 (166)
T 3md3_A 81 Q------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDF--PSYLSGHVMWD 122 (166)
T ss_dssp C------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTS--TTEEEEEEEEC
T ss_pred C------------CCCCCCceEEECCCCCCCCHHHHHHHHhcc--CCeeEEEEEec
Confidence 1 112257899999999999999999999999 89999999987
No 23
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.92 E-value=4.4e-24 Score=170.54 Aligned_cols=120 Identities=24% Similarity=0.449 Sum_probs=108.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCC
Q 024698 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 116 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~ 192 (264)
+++|||+|||+++|+++|+++|++||+|.+++++.++. .++|||||+|.+.++|.+|+ .|||..+.|++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 57899999999999999999999999999999998874 47799999999999999999 7999999999999998653
Q ss_pred CCCCCCCCCCCCChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeeccc
Q 024698 193 AILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIIL 251 (264)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d~ 251 (264)
.. . .....+|||+|||+.+++++|+++|++| |.|.+++++.|.
T Consensus 82 ~~-----------~---~~~~~~l~v~nl~~~~t~~~l~~~f~~~--G~i~~~~i~~~~ 124 (167)
T 1fxl_A 82 SS-----------A---SIRDANLYVSGLPKTMTQKELEQLFSQY--GRIITSRILVDQ 124 (167)
T ss_dssp CC-----------G---GGTTCEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECT
T ss_pred Cc-----------c---cCCCCcEEECCCCCcCCHHHHHHHHHhc--CCEeEEEEEecC
Confidence 21 1 1256889999999999999999999999 999999999874
No 24
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.92 E-value=2.9e-24 Score=172.11 Aligned_cols=121 Identities=20% Similarity=0.354 Sum_probs=108.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
..++|||+|||+++|+++|+++|++||+|.+++++.++. .++|||||+|.+.++|.+|+ .+++..+.|++|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 468899999999999999999999999999999998865 37899999999999999999 799999999999999975
Q ss_pred CCCCCCCCCCCCCChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeeccc
Q 024698 192 TAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIIL 251 (264)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d~ 251 (264)
+... ....++|||+|||..+++++|+++|++| |.|.++++++|.
T Consensus 82 ~~~~--------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~--G~i~~~~i~~~~ 125 (168)
T 1b7f_A 82 PGGE--------------SIKDTNLYVTNLPRTITDDQLDTIFGKY--GSIVQKNILRDK 125 (168)
T ss_dssp CCSS--------------TTTTCEEEEESCCTTCCHHHHHHHHTSS--SCEEEEEEEECT
T ss_pred CCcc--------------cCCCCCEEEeCCCCCCCHHHHHHhhhcC--CcEEEEEEEEcC
Confidence 3221 1246899999999999999999999999 899999999875
No 25
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.92 E-value=1.8e-24 Score=180.57 Aligned_cols=131 Identities=18% Similarity=0.200 Sum_probs=107.0
Q ss_pred CCCEEEEcCCC-CCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCC
Q 024698 115 VRRTVYVSDID-QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 115 ~~~~lfV~nLp-~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~ 192 (264)
...+|||+||| +.+|+++|+++|++||.|.+|+++++ ++|||||+|.+.++|.+|+ .|||..+.|++|+|.+++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~---~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS---KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT---STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC---CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 46789999999 89999999999999999999999876 4699999999999999999 7999999999999999864
Q ss_pred CCC-CCCC-----------CCCC----C--Chhh-----hcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCce--EEEEe
Q 024698 193 AIL-PVNP-----------TFLP----R--SEDE-----REMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEV--RTLPC 247 (264)
Q Consensus 193 ~~~-~~~~-----------~~~~----~--~~~~-----~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I--~~v~l 247 (264)
... +..+ .+.. + .... ...+.++|||+|||+++++++|+++|++| |.| .++++
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~--G~v~~~~v~~ 157 (205)
T 3tyt_A 80 PAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDEL--GVKRPTSVKV 157 (205)
T ss_dssp SCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHH--TCCCCSEEEE
T ss_pred CccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhc--CCcceEEEEE
Confidence 321 1110 0000 0 0000 01246789999999999999999999999 899 89999
Q ss_pred ecc
Q 024698 248 MII 250 (264)
Q Consensus 248 ~~d 250 (264)
+.|
T Consensus 158 ~~~ 160 (205)
T 3tyt_A 158 FSG 160 (205)
T ss_dssp CSC
T ss_pred EcC
Confidence 987
No 26
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.92 E-value=1.8e-24 Score=186.72 Aligned_cols=150 Identities=22% Similarity=0.253 Sum_probs=123.8
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccCCCcCC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKRL 102 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~g~~~~ 102 (264)
.+..+.||++++|+++|+++|++||+|.+|++.+ ++ |||||+|.+.+ +|.+|+..+++-.-
T Consensus 23 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~k-------g~afV~f~~~~----~A~~A~~~l~g~~i-- 83 (261)
T 3sde_A 23 CRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DR-------GFGFIRLESRT----LAEIAKAELDGTIL-- 83 (261)
T ss_dssp GEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TT-------TEEEEECSSHH----HHHHHHHHHTTCEE--
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CC-------cEEEEEECCHH----HHHHHHHHcCCcEE--
Confidence 4689999999999999999999999999999964 35 99999999999 88888888876211
Q ss_pred CCcchhcccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHH-Hh-CCce
Q 024698 103 SGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAAL-NL-GGTM 179 (264)
Q Consensus 103 ~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al-~l-n~~~ 179 (264)
.++..... .....++|||+|||+.+|+++|+++|++||.|..|.++.|.. .++|||||+|.+.++|.+|+ .| ++..
T Consensus 84 ~g~~l~v~-~a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~ 162 (261)
T 3sde_A 84 KSRPLRIR-FATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAF 162 (261)
T ss_dssp TTEECEEE-ECCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCE
T ss_pred CCceeEee-ecccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeE
Confidence 11111110 012457899999999999999999999999999999998865 47899999999999999999 78 5555
Q ss_pred eC---CeeEEEeeCCC
Q 024698 180 LG---YYPVRVLPSKT 192 (264)
Q Consensus 180 ~~---g~~i~V~~~~~ 192 (264)
+. +++|.|.++..
T Consensus 163 ~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 163 LLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp ESSSSCCBCEEEECCC
T ss_pred EecCCCceEEEeeccc
Confidence 55 99999999754
No 27
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.92 E-value=3.6e-24 Score=172.53 Aligned_cols=122 Identities=19% Similarity=0.282 Sum_probs=106.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCC----CceEEEEEecCHHHHHHHH-HhCCceeC---CeeEE
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS----VLRFAFVEFADEHGARAAL-NLGGTMLG---YYPVR 186 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~----~~g~afV~f~~~e~a~~Al-~ln~~~~~---g~~i~ 186 (264)
..++|||+|||+++|+++|+++|++||+|.+|++++++.+ ++|||||+|.+.++|.+|+ .||+..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 4678999999999999999999999999999999988764 6799999999999999999 79998875 67888
Q ss_pred EeeCCCCCCCCCCCCCCCChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeeccc
Q 024698 187 VLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIIL 251 (264)
Q Consensus 187 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d~ 251 (264)
+.++..... .....++|||+|||+++++++|+++|++| |.|.++++++|.
T Consensus 82 ~~~~~~~~~-------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~--G~i~~v~~~~~~ 131 (175)
T 3nmr_A 82 MKPADSEKN-------------NAVEDRKLFIGMISKKCTENDIRVMFSSF--GQIEECRILRGP 131 (175)
T ss_dssp EEECGGGCC-------------SCGGGSEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEECT
T ss_pred Ecccccccc-------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhC--CCEEEEEEEECC
Confidence 887542211 11146799999999999999999999999 999999999883
No 28
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.91 E-value=2.2e-24 Score=163.68 Aligned_cols=108 Identities=22% Similarity=0.356 Sum_probs=74.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTA 193 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~~ 193 (264)
...+|||+|||+++|+++|+++|++||+|.+|+|+.|+.+++|||||+|.+.++|.+|+ .||+..+.|+.|+|.+++..
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 45689999999999999999999999999999999998888999999999999999999 79999999999999997542
Q ss_pred CCCCCCCCCCCChhhhcCCCCeEEEcCCCCCCCHH
Q 024698 194 ILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQA 228 (264)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~i~v~nL~~~~te~ 228 (264)
... ............+|||+|||+++|++
T Consensus 84 ~~~------~~~~~~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 84 KER------EAELGARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp CC---------------------------------
T ss_pred ccc------ccccccccCCCCceEeCCCCCCcccc
Confidence 211 00111112245689999999999986
No 29
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.91 E-value=1.7e-23 Score=174.40 Aligned_cols=132 Identities=21% Similarity=0.321 Sum_probs=108.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
..++|||+|||+++|+++|+++|++||+|.+|+++.++. .++|||||+|.+.++|.+|+ .||+..+.|+.|+|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 467899999999999999999999999999999998874 47899999999999999999 699999999999998754
Q ss_pred CCCCCCCCCCCCCChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeeccc
Q 024698 192 TAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIIL 251 (264)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d~ 251 (264)
...... + . ...........++|||+|||.++++++|+++|++| |.|.+++++.|.
T Consensus 107 ~~~~~~-~-~-~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~ 161 (216)
T 2qfj_A 107 NIGQAQ-P-I-IDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAF--GKIKSATLARDP 161 (216)
T ss_dssp CCGGGH-H-H-HHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTS--SCEEEEEEEECT
T ss_pred Cccccc-h-h-hhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhcc--CCeeEEEEEecC
Confidence 321000 0 0 00001113367899999999999999999999999 899999999883
No 30
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.91 E-value=3e-24 Score=171.98 Aligned_cols=120 Identities=18% Similarity=0.317 Sum_probs=105.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeCCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~~~ 192 (264)
..++|||+|||+++|+++|+++|++||+|.+|++++++. .++|||||+|.+.++|.+|++ ++..+.|+.|.|.++..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeEcccccccc
Confidence 357899999999999999999999999999999998864 488999999999999999996 36789999999987532
Q ss_pred CCCCCCCCCCCCChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeeccc
Q 024698 193 AILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIIL 251 (264)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d~ 251 (264)
+.. ....++|||+|||+++++++|+++|++| |.|.+++++.|.
T Consensus 81 -----------~~~---~~~~~~l~V~nlp~~~t~~~l~~~F~~~--G~i~~~~i~~~~ 123 (167)
T 2cjk_A 81 -----------RDE---QDKTGKIFVGGIGPDVRPKEFEEFFSQW--GTIIDAQLMLDK 123 (167)
T ss_dssp -----------HHH---HHHCEEEEEEEECTTCCHHHHHHHHHTT--SCCSEEECCCSS
T ss_pred -----------hhh---ccCCCeEEECCCCCCCCHHHHHHHHHhC--ccEEEEEEEEcC
Confidence 111 1246799999999999999999999999 899999999883
No 31
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.90 E-value=1.1e-22 Score=172.23 Aligned_cols=139 Identities=23% Similarity=0.272 Sum_probs=110.8
Q ss_pred CCCCEEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 114 SVRRTVYVSDIDQ-NITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 114 ~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
...++|||+|||+ ++|+++|+++|++||.|..|+++.++ +|||||+|.+.++|.+|+ .||+..+.|+.|+|.+++
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 3678999999999 99999999999999999999998876 689999999999999999 699999999999999986
Q ss_pred CCCCCCCC------------------CCCCCCh---hhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCC-ceEEEEeec
Q 024698 192 TAILPVNP------------------TFLPRSE---DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGG-EVRTLPCMI 249 (264)
Q Consensus 192 ~~~~~~~~------------------~~~~~~~---~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG-~I~~v~l~~ 249 (264)
........ .+.+... .......++|||+|||+.+++++|+++|++| | .|.++++.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~--G~~i~~v~i~~ 186 (229)
T 2adc_A 109 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSN--GGVVKGFKFFQ 186 (229)
T ss_dssp CCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTT--SCCEEEEEECS
T ss_pred CccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHc--CCCeeEEEEEE
Confidence 43211000 0000000 0012246899999999999999999999999 9 999999966
Q ss_pred cccceeeE
Q 024698 250 ILFYFHLF 257 (264)
Q Consensus 250 d~~~~~~~ 257 (264)
+-.++.|+
T Consensus 187 ~~~g~afV 194 (229)
T 2adc_A 187 KDRKMALI 194 (229)
T ss_dssp SSTTCEEE
T ss_pred CCCcEEEE
Confidence 43444433
No 32
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.90 E-value=1.8e-22 Score=175.52 Aligned_cols=142 Identities=20% Similarity=0.281 Sum_probs=111.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHH----HHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEE
Q 024698 113 DSVRRTVYVSDIDQNITEERLA----GLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRV 187 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V 187 (264)
....++|||+|||+++|+++|+ ++|++||.|.+|++.++ ..++|||||+|.+.++|.+|+ .|||..+.|+.|+|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRS-LKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCC-CCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 3467899999999999999977 89999999999999873 347899999999999999999 89999999999999
Q ss_pred eeCCCCCCC---CCCCCCCC------------------------------------------------------------
Q 024698 188 LPSKTAILP---VNPTFLPR------------------------------------------------------------ 204 (264)
Q Consensus 188 ~~~~~~~~~---~~~~~~~~------------------------------------------------------------ 204 (264)
.+++..... ....+..+
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 987543210 00000000
Q ss_pred ----------------------------------ChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeecc
Q 024698 205 ----------------------------------SEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMII 250 (264)
Q Consensus 205 ----------------------------------~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d 250 (264)
.........++|||+|||..+++++|+++|++| |.|.+|+|+.+
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~--G~i~~v~~~~~ 242 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQF--PGFKEVRLVPG 242 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhc--CCeEEEEEecC
Confidence 000112246789999999999999999999999 89999999987
Q ss_pred ccceeeE
Q 024698 251 LFYFHLF 257 (264)
Q Consensus 251 ~~~~~~~ 257 (264)
..++.|+
T Consensus 243 ~~g~afV 249 (282)
T 3pgw_A 243 RHDIAFV 249 (282)
T ss_pred CCcEEEE
Confidence 6444443
No 33
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.90 E-value=1.5e-22 Score=162.86 Aligned_cols=117 Identities=18% Similarity=0.309 Sum_probs=103.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcC----C-------CeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhCCceeCCe
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSC----G-------QVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYY 183 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al~ln~~~~~g~ 183 (264)
..++|||+|||+++|+++|+++|++| | .|.++.+.. ++|||||+|.++++|.+|+.+|+..+.|+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~----~~g~afV~f~~~~~A~~A~~~~~~~~~g~ 78 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ----DKNFAFLEFRSVDETTQAMAFDGIIFQGQ 78 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET----TTTEEEEEESSHHHHHHHGGGTTCEETTE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC----CCCEEEEEeCCHHHHHHHHHhCCcEecCc
Confidence 35789999999999999999999999 6 788887754 46899999999999999999999999999
Q ss_pred eEEEeeCCCCCCCCCCCCCCCChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeeccc
Q 024698 184 PVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIIL 251 (264)
Q Consensus 184 ~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d~ 251 (264)
+|+|.++..... ....++|||+|||+++++++|+++|++| |+|.++++++|.
T Consensus 79 ~i~v~~~~~~~~--------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~--G~v~~v~i~~~~ 130 (172)
T 2g4b_A 79 SLKIRRPHDYQP--------------LPGAHKLFIGGLPNYLNDDQVKELLTSF--GPLKAFNLVKDS 130 (172)
T ss_dssp ECEEECCSSCCC--------------CTTTTCEEEECCCTTCCHHHHHHHHHTT--SCEEEEEEEECT
T ss_pred eeeecCCcccCC--------------CCCCCEEEEEcCCCcCCHHHHHHHHHhc--CCceEEEEEecC
Confidence 999998643211 1146899999999999999999999999 899999999884
No 34
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.89 E-value=2.4e-22 Score=165.21 Aligned_cols=131 Identities=17% Similarity=0.306 Sum_probs=105.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcC----C-------CeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhCCceeCCe
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSC----G-------QVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYY 183 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al~ln~~~~~g~ 183 (264)
..++|||+|||+++|+++|+++|++| | .|.++.+. .++|||||+|.+.++|.+|+.|||..+.|+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~----~~~g~afV~F~~~~~A~~Al~l~g~~~~g~ 78 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN----QDKNFAFLEFRSVDETTQAMAFDGIIFQGQ 78 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE----TTTTEEEEEESCSHHHHHHGGGTTEEETTE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec----CCCCEEEEEeCCHHHHHHHHHhcCCEEcCc
Confidence 46899999999999999999999999 5 67777663 357899999999999999999999999999
Q ss_pred eEEEeeCCCCCCCCCCC-----CCCC-ChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeeccc
Q 024698 184 PVRVLPSKTAILPVNPT-----FLPR-SEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMIIL 251 (264)
Q Consensus 184 ~i~V~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d~ 251 (264)
.|+|.++.......... ..+. .........++|||+|||..+++++|+++|++| |.|.+++++.|.
T Consensus 79 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~--G~v~~~~~~~~~ 150 (198)
T 2yh0_A 79 SLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSF--GPLKAFNLVKDS 150 (198)
T ss_dssp EEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTB--SCEEEEEEEECT
T ss_pred eEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHc--CCccEEEEeecC
Confidence 99999976543211100 0000 001112367899999999999999999999999 899999999884
No 35
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.89 E-value=2.1e-22 Score=173.76 Aligned_cols=111 Identities=23% Similarity=0.359 Sum_probs=103.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCC
Q 024698 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 114 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~ 192 (264)
...++|||+|||+++|+++|+++|++||.|..|.+.++ +|||||+|.+.++|.+|+ .+||..+.|+.|+|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~- 94 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD----RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT- 94 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc-
Confidence 35678999999999999999999999999999999654 689999999999999999 799999999999999854
Q ss_pred CCCCCCCCCCCCChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEEEeecc
Q 024698 193 AILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTLPCMII 250 (264)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v~l~~d 250 (264)
...+|||+|||+.+++++|+++|++| |.|.+|.|+.|
T Consensus 95 -------------------~~~~l~v~nl~~~~t~~~l~~~F~~~--G~i~~v~i~~~ 131 (261)
T 3sde_A 95 -------------------HGAALTVKNLSPVVSNELLEQAFSQF--GPVEKAVVVVD 131 (261)
T ss_dssp -------------------CSSEEEEESCCTTCCHHHHHHHHGGG--SCEEEEEEEEE
T ss_pred -------------------cCCcccccCCCCCCCHHHHHHHHHhc--CCeEEEEeeeC
Confidence 35789999999999999999999999 89999999988
No 36
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.89 E-value=9.2e-23 Score=168.25 Aligned_cols=137 Identities=23% Similarity=0.270 Sum_probs=109.6
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCC
Q 024698 115 VRRTVYVSDIDQ-NITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 115 ~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~ 192 (264)
.+++|||+|||+ ++|+++|+++|++||.|..|+++.++ +|||||+|.+.++|.+|+ .|||..+.|+.|+|.+++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 357899999999 99999999999999999999998875 689999999999999999 6999999999999999864
Q ss_pred CCCCCCC------------------CCCCCCh---hhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCC-ceEEEEeecc
Q 024698 193 AILPVNP------------------TFLPRSE---DEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGG-EVRTLPCMII 250 (264)
Q Consensus 193 ~~~~~~~------------------~~~~~~~---~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG-~I~~v~l~~d 250 (264)
....... .+.+... .....+.++|||+|||..+++++|+++|++| | .|.++++.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~--G~~v~~v~i~~~ 156 (198)
T 1qm9_A 79 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSN--GGVVKGFKFFQK 156 (198)
T ss_dssp CSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHT--TSCCCEEEESST
T ss_pred CCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHc--CCCceEEEEEeC
Confidence 3211000 0000000 0011247899999999999999999999999 9 9999999765
Q ss_pred ccceee
Q 024698 251 LFYFHL 256 (264)
Q Consensus 251 ~~~~~~ 256 (264)
-.++.|
T Consensus 157 ~~g~af 162 (198)
T 1qm9_A 157 DRKMAL 162 (198)
T ss_dssp TSSCEE
T ss_pred CCcEEE
Confidence 444433
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.87 E-value=4.1e-22 Score=159.08 Aligned_cols=131 Identities=17% Similarity=0.191 Sum_probs=101.5
Q ss_pred EEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC-----CCcCCC-----------CcchhcccCCC
Q 024698 51 KEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ-----GRKRLS-----------GRAFRAQREDS 114 (264)
Q Consensus 51 ~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~-----g~~~~~-----------~~~~~~~~~~~ 114 (264)
.+.++.+.. +++ |||||+|.+.+ +|.+++..+++ |..... ...........
T Consensus 2 ~~kl~ln~~--~~~-------G~~fV~f~~~~----~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (158)
T 2kn4_A 2 QYKLILNGK--TLK-------GETTTEAVDAA----TAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVE 68 (158)
T ss_dssp EEEEEEECS--SCE-------EEEEEECSSHH----HHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCC
T ss_pred cEEEEecCc--ccc-------chhHHHHHHHH----hHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCC
Confidence 355555554 567 99999999999 77777766553 111000 00011112223
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
..++|||+|||+++|+++|+++|++||+|..|+++.|+. .++|||||+|.+.++|.+|+ .|||..+.|++|+|.+++
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 148 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMAR 148 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 467899999999999999999999999999999999864 58899999999999999999 799999999999999987
Q ss_pred CCC
Q 024698 192 TAI 194 (264)
Q Consensus 192 ~~~ 194 (264)
+..
T Consensus 149 ~~~ 151 (158)
T 2kn4_A 149 YGR 151 (158)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 38
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.86 E-value=2.4e-22 Score=162.38 Aligned_cols=119 Identities=20% Similarity=0.272 Sum_probs=99.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCC--CCCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEee
Q 024698 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP--HSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLP 189 (264)
Q Consensus 112 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~--~~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~ 189 (264)
.+...++|||+|||+++|+++|+++|++||.+..+. +.+. ..++|||||+|.+.++|.+|++||+..+.|++|+|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~-~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLA-VVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCC-CCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEE-EEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeEEEEec
Confidence 344678999999999999999999999999876522 2222 2478999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhhcCCCceEEE
Q 024698 190 SKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAACGGEVRTL 245 (264)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~~gG~I~~v 245 (264)
+..... . .....++|||+|||+++++++|+++|++| |.|..+
T Consensus 88 ~~~~~~--------~----~~~~~~~l~v~nlp~~~t~~~l~~~F~~~--g~v~~~ 129 (175)
T 1fje_B 88 PKGRDS--------K----KVRAARTLLAKNLSFNITEDELKEVFEDA--LEIRLV 129 (175)
T ss_dssp CCCSSC--------S----TTGGGGEEEEESCCSSCCHHHHHHHCTTC--SEEEEE
T ss_pred CCCccc--------c----ccccCCEEEEeCCCCCCCHHHHHHHHHhc--CeEEEe
Confidence 753211 1 11256899999999999999999999999 899877
No 39
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.83 E-value=3.5e-20 Score=136.84 Aligned_cols=78 Identities=27% Similarity=0.427 Sum_probs=72.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
..++|||+|||+++|+++|+++|++||+|.+|++++|+. .++|||||+|.+.++|.+|+ .|||..+.|++|+|.+++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 457899999999999999999999999999999999876 47899999999999999999 799999999999999975
Q ss_pred C
Q 024698 192 T 192 (264)
Q Consensus 192 ~ 192 (264)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 3
No 40
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.81 E-value=5.5e-20 Score=145.59 Aligned_cols=114 Identities=24% Similarity=0.289 Sum_probs=90.8
Q ss_pred ceEEeccCCcccccchHHHHHhhc-cC----CCcCCC--Cc------------chhcccCCCCCCEEEEcCCCCCCCHHH
Q 024698 72 NFADDNKQSAIDNFNNNRRRRNNF-NQ----GRKRLS--GR------------AFRAQREDSVRRTVYVSDIDQNITEER 132 (264)
Q Consensus 72 gf~fV~f~~~~~a~~~A~~a~~~~-~~----g~~~~~--~~------------~~~~~~~~~~~~~lfV~nLp~~~te~~ 132 (264)
|+++|+|.+.+ +|.+|+..+ ++ |..+.. .. ...........++|||+|||+++|+++
T Consensus 14 G~~~ve~~~~~----~A~~a~~~~~ng~~~~G~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~ 89 (150)
T 2i2y_A 14 GETTTEAVDAA----TAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTE 89 (150)
T ss_dssp EEEEEECSSHH----HHTTTHHHHHHHHTCCCEEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHH
T ss_pred ccceeeecCHH----HHHHHHHHHhcCCCCCCceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHH
Confidence 99999999999 666666555 33 211000 00 001122333568999999999999999
Q ss_pred HHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCC
Q 024698 133 LAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 133 L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~ 192 (264)
|+++|++||+|..|+++.+ ++|||||+|.+.++|.+|+ .|||..+.|++|+|.++++
T Consensus 90 l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 147 (150)
T 2i2y_A 90 LERAFGYYGPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNG 147 (150)
T ss_dssp HHHHHHHHSCEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCC
T ss_pred HHHHHHhhCCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCC
Confidence 9999999999999999877 5799999999999999999 7999999999999999754
No 41
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.81 E-value=3.6e-20 Score=144.42 Aligned_cols=122 Identities=18% Similarity=0.212 Sum_probs=76.8
Q ss_pred ceEEeccCCcccccchHHHHHhhccCCCcCC--CCcchhcccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEe
Q 024698 72 NFADDNKQSAIDNFNNNRRRRNNFNQGRKRL--SGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVC 149 (264)
Q Consensus 72 gf~fV~f~~~~~a~~~A~~a~~~~~~g~~~~--~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~ 149 (264)
|+++..|...+|.. .+..|+..+++|...- ..............++|||+|||+++|+++|+++|++||+|..|+++
T Consensus 2 ~~~~~~~~~~~~~~-~~~~a~~~~~g~~~~g~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~ 80 (135)
T 2lea_A 2 GSSHHHHHHSSGLV-PRGSHMASMTGGQQMGRGSMSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIP 80 (135)
T ss_dssp ----------------------------------CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECC
T ss_pred CccccccccccCCC-chhhhhhhccCCCCCCCCCCCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 55555555555444 7788888887744311 11111222333356789999999999999999999999999999999
Q ss_pred cCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCCCC
Q 024698 150 GDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAI 194 (264)
Q Consensus 150 ~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~~~ 194 (264)
.++. .++|||||+|.+.++|.+|+ .||+..+.|+.|+|.+++...
T Consensus 81 ~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 81 RDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp CCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCC
T ss_pred ecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 8864 48899999999999999999 799999999999999987543
No 42
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.80 E-value=7.6e-20 Score=135.07 Aligned_cols=99 Identities=24% Similarity=0.296 Sum_probs=81.7
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCCCCC
Q 024698 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAIL 195 (264)
Q Consensus 117 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~~~~ 195 (264)
++|||+|||+++|+++|+++|++||+|..|.+..+ ++|||||+|.+.++|.+|+ .||+..+.|+.|+|.+++....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 47999999999999999999999999999999888 7899999999999999999 7999999999999999875432
Q ss_pred CCCCCCCCCChhhhcCCCCeEEEcCCC
Q 024698 196 PVNPTFLPRSEDEREMCSRTVYCTNID 222 (264)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~i~v~nL~ 222 (264)
.......+ .+.....+|||+||+
T Consensus 78 ~~~~~~~~----~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 78 RSRFDRPP----ARRKLLEVLFNGPLE 100 (101)
T ss_dssp SSCCCSCC----CSCCCCSCCCSCCCC
T ss_pred cccCCCCC----ccccCCCceecCCCC
Confidence 21111111 111246789999997
No 43
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.79 E-value=1.8e-19 Score=136.17 Aligned_cols=101 Identities=24% Similarity=0.345 Sum_probs=89.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCC
Q 024698 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 114 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~ 192 (264)
...++|||+|||+++|+++|+++|++||.|..|.++.+.. ++|||||+|.+.++|.+|+ .|||..+.|+.|+|.++.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPE-TRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTT-TTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 3578999999999999999999999999999999987754 5899999999999999999 6999999999999998642
Q ss_pred CCCCCCCCCCCCChhhhcCCCCeEEEcCCCCCCCHHHHHHHHhhc
Q 024698 193 AILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQFFEAA 237 (264)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~i~v~nL~~~~te~~L~~~F~~~ 237 (264)
. ... .+++...++++|+++|++|
T Consensus 85 ~-----------~~~-----------~~~~~~~~~~~l~~~~~~~ 107 (115)
T 3lqv_A 85 N-----------RAF-----------QKMDTKKKEEQLKLLKEKY 107 (115)
T ss_dssp H-----------HHT-----------TTSCHHHHHHHHHHHHHHH
T ss_pred C-----------hhh-----------hhhhHhHhHHHHHHHHHHh
Confidence 1 111 6778889999999999998
No 44
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.79 E-value=7.5e-19 Score=132.12 Aligned_cols=77 Identities=21% Similarity=0.240 Sum_probs=72.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
..++|||+|||+++|+++|+++|++||+|.+|+|+.|+. .++|||||+|.+.++|.+|+ .|||..+.|+.|+|.+++
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 568999999999999999999999999999999999886 47899999999999999999 799999999999999864
No 45
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2e-18 Score=127.80 Aligned_cols=81 Identities=31% Similarity=0.452 Sum_probs=75.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
....++|||+|||+.+|+++|+++|++||+|..|+++.++.+++|||||+|.+.++|.+|+ .||+..+.|+.|+|.+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 3467899999999999999999999999999999999998878999999999999999999 699999999999999986
Q ss_pred CC
Q 024698 192 TA 193 (264)
Q Consensus 192 ~~ 193 (264)
..
T Consensus 92 ~~ 93 (103)
T 2cqi_A 92 TP 93 (103)
T ss_dssp CT
T ss_pred CC
Confidence 53
No 46
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.2e-18 Score=126.68 Aligned_cols=81 Identities=22% Similarity=0.339 Sum_probs=75.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
+...++|||+|||+++|+++|+++|++||+|..|+|+.++..++|||||+|.+.++|.+|+ .||+..+.|+.|+|.+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 91 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 3467899999999999999999999999999999999998778999999999999999999 799999999999999986
Q ss_pred CC
Q 024698 192 TA 193 (264)
Q Consensus 192 ~~ 193 (264)
..
T Consensus 92 ~~ 93 (103)
T 2cq3_A 92 AR 93 (103)
T ss_dssp SS
T ss_pred cC
Confidence 53
No 47
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.77 E-value=3.8e-19 Score=129.14 Aligned_cols=77 Identities=23% Similarity=0.235 Sum_probs=69.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-Hh-CCceeCCeeEEEeeC
Q 024698 116 RRTVYVSDIDQNITEERLAGLFSSCG-QVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NL-GGTMLGYYPVRVLPS 190 (264)
Q Consensus 116 ~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~l-n~~~~~g~~i~V~~~ 190 (264)
+++|||+|||+++|+++|+++|++|| +|.+|+|++|+. .++|||||+|.+.++|.+|+ .+ ++..+.|++|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 899999998876 48899999999999999999 55 567899999999987
Q ss_pred CC
Q 024698 191 KT 192 (264)
Q Consensus 191 ~~ 192 (264)
.+
T Consensus 81 ~~ 82 (91)
T 2lxi_A 81 DP 82 (91)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 48
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.77 E-value=5.8e-18 Score=127.83 Aligned_cols=84 Identities=27% Similarity=0.425 Sum_probs=76.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEe
Q 024698 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVL 188 (264)
Q Consensus 112 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~ 188 (264)
.....++|||+|||+.+|+++|+++|++||.|..|+|+.++. .++|||||+|.+.++|.+|+ .||+..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 444678999999999999999999999999999999998864 47899999999999999999 799999999999999
Q ss_pred eCCCCCC
Q 024698 189 PSKTAIL 195 (264)
Q Consensus 189 ~~~~~~~ 195 (264)
+++....
T Consensus 91 ~a~~~~~ 97 (115)
T 2dgo_A 91 WATRKPP 97 (115)
T ss_dssp ESSCCCC
T ss_pred EccCCCC
Confidence 9875543
No 49
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=129.56 Aligned_cols=80 Identities=19% Similarity=0.254 Sum_probs=73.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeC
Q 024698 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 112 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~ 190 (264)
.+...++|||+|||+++|+++|+++|++||+|.+|+|+.|+. .++|||||+|.+.++|.+|+.+++..+.|+.|.|.++
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFK 86 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEEH
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 344568899999999999999999999999999999998875 5889999999999999999999999999999999985
Q ss_pred C
Q 024698 191 K 191 (264)
Q Consensus 191 ~ 191 (264)
.
T Consensus 87 ~ 87 (103)
T 1s79_A 87 D 87 (103)
T ss_dssp H
T ss_pred h
Confidence 3
No 50
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.1e-18 Score=125.40 Aligned_cols=78 Identities=22% Similarity=0.222 Sum_probs=73.2
Q ss_pred CCCEEEEcCCCCCCCHHHHH----HHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEee
Q 024698 115 VRRTVYVSDIDQNITEERLA----GLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLP 189 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~ 189 (264)
..++|||+|||+++|+++|+ ++|++||+|.+|+++.|+.+ +|||||+|.+.++|.+|+ .|||..+.|++|+|.+
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 45789999999999999999 99999999999999998877 999999999999999999 7999999999999999
Q ss_pred CCCC
Q 024698 190 SKTA 193 (264)
Q Consensus 190 ~~~~ 193 (264)
+++.
T Consensus 87 a~~~ 90 (96)
T 2dgx_A 87 ATGA 90 (96)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 8643
No 51
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.77 E-value=2.3e-18 Score=122.83 Aligned_cols=78 Identities=28% Similarity=0.406 Sum_probs=72.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeC
Q 024698 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 114 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~ 190 (264)
...++|||+|||+++|+++|+++|++||+|..++++.++.+ ++|||||+|.+.++|.+|+ .|||..+.|++|+|.++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 35789999999999999999999999999999999888653 7899999999999999999 89999999999999986
Q ss_pred C
Q 024698 191 K 191 (264)
Q Consensus 191 ~ 191 (264)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 52
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.2e-18 Score=126.04 Aligned_cols=82 Identities=21% Similarity=0.298 Sum_probs=74.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEe
Q 024698 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVL 188 (264)
Q Consensus 112 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~ 188 (264)
.....++|||+|||+++|+++|+++|++||+|..|+++.++. .++|||||+|.+.++|.+|+ .||+..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 344678999999999999999999999999999999998864 47899999999999999999 799999999999999
Q ss_pred eCCCC
Q 024698 189 PSKTA 193 (264)
Q Consensus 189 ~~~~~ 193 (264)
++++.
T Consensus 91 ~a~~~ 95 (103)
T 2cq0_A 91 WAKPS 95 (103)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 98653
No 53
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.77 E-value=6.9e-19 Score=128.85 Aligned_cols=78 Identities=19% Similarity=0.206 Sum_probs=70.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCC--eeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCc----eeCCeeE
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQ--VVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGT----MLGYYPV 185 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~--i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~----~~~g~~i 185 (264)
.-.||||+|||+++|+++|+++|++||. |.+|++++|+. .++|||||+|.+.++|.+|+ .||+. .+.||+|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 4568999999999999999999999995 67999999876 48899999999999999999 79986 5899999
Q ss_pred EEeeCCC
Q 024698 186 RVLPSKT 192 (264)
Q Consensus 186 ~V~~~~~ 192 (264)
.|.+++.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999763
No 54
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.76 E-value=4.4e-19 Score=128.36 Aligned_cols=77 Identities=19% Similarity=0.245 Sum_probs=68.0
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCC--CeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 117 RTVYVSDIDQNITEERLAGLFSSCG--QVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 117 ~~lfV~nLp~~~te~~L~~~F~~~G--~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
.+|||+|||+++|+++|+++|++|| +|.+++++.|+. .++|||||+|.+.++|.+|+ .|||..+.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 999999999865 47899999999999999999 799999999999999976
Q ss_pred CC
Q 024698 192 TA 193 (264)
Q Consensus 192 ~~ 193 (264)
++
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 55
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4e-18 Score=124.11 Aligned_cols=80 Identities=25% Similarity=0.287 Sum_probs=73.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEee
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLP 189 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~ 189 (264)
+...++|||+|||+++|+++|+++|++||+|..|.++.++. .++|||||+|.+.++|.+|+ .||+..+.|++|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34568899999999999999999999999999999998876 47899999999999999999 7999999999999998
Q ss_pred CCC
Q 024698 190 SKT 192 (264)
Q Consensus 190 ~~~ 192 (264)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 753
No 56
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.76 E-value=4.2e-18 Score=122.14 Aligned_cols=79 Identities=20% Similarity=0.368 Sum_probs=72.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEee
Q 024698 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLP 189 (264)
Q Consensus 112 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~ 189 (264)
.+...++|||+|||+++|+++|+++|++||+|..++++.++. .++|||||+|.+.++|.+|+++++..+.|+.|+|.+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKK 86 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEEe
Confidence 344678999999999999999999999999999999998875 478999999999999999998899999999999986
Q ss_pred C
Q 024698 190 S 190 (264)
Q Consensus 190 ~ 190 (264)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 3
No 57
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3.7e-18 Score=125.12 Aligned_cols=80 Identities=26% Similarity=0.452 Sum_probs=73.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-----CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEe
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-----SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVL 188 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-----~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~ 188 (264)
..++|||+|||+++|+++|+++|++||+|..|++..++. .++|||||+|.+.++|.+|+ .||+..+.|+.|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 567899999999999999999999999999999998765 46799999999999999999 699999999999999
Q ss_pred eCCCCC
Q 024698 189 PSKTAI 194 (264)
Q Consensus 189 ~~~~~~ 194 (264)
+++...
T Consensus 84 ~a~~~~ 89 (98)
T 2cpf_A 84 ISERAT 89 (98)
T ss_dssp CSSCSS
T ss_pred EccCCC
Confidence 986543
No 58
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.76 E-value=4.6e-18 Score=122.25 Aligned_cols=78 Identities=29% Similarity=0.579 Sum_probs=73.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeCCCC
Q 024698 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKTA 193 (264)
Q Consensus 116 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~~~~ 193 (264)
.++|||+|||+++|+++|+++|++||+|..++++.++. .++|||||+|.+.++|.+|+.+|+..+.|+.|+|.+++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEEEETTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEEEEccCC
Confidence 57899999999999999999999999999999998864 4789999999999999999999999999999999998654
No 59
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.76 E-value=4e-18 Score=123.44 Aligned_cols=81 Identities=20% Similarity=0.232 Sum_probs=74.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCC
Q 024698 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 114 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~ 192 (264)
...++|||+|||+++|+++|+++|++||+|..+++..+...++|||||+|.+.++|.+|+ .||+..+.|+.|+|.++++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 356899999999999999999999999999999999876678999999999999999999 7999999999999999865
Q ss_pred CC
Q 024698 193 AI 194 (264)
Q Consensus 193 ~~ 194 (264)
..
T Consensus 86 ~~ 87 (92)
T 2dgv_A 86 AS 87 (92)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 60
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.76 E-value=3e-18 Score=124.84 Aligned_cols=80 Identities=28% Similarity=0.453 Sum_probs=73.6
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEee
Q 024698 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLP 189 (264)
Q Consensus 112 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~ 189 (264)
.+...++|||+|||+.+|+++|+++|++||+|..|+++.++. .++|||||+|.+.++|.+|+ .||+..+.|++|+|.+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 334568999999999999999999999999999999998876 47899999999999999999 6999999999999998
Q ss_pred CC
Q 024698 190 SK 191 (264)
Q Consensus 190 ~~ 191 (264)
++
T Consensus 92 a~ 93 (95)
T 2ywk_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 61
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=5.2e-18 Score=125.55 Aligned_cols=81 Identities=25% Similarity=0.409 Sum_probs=74.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
+...++|||+|||+++|+++|+++|++||+|..|+++.+...++|||||+|.+.++|.+|+ .||+..+.|+.|+|.+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 3367889999999999999999999999999999999984467899999999999999999 799999999999999986
Q ss_pred CC
Q 024698 192 TA 193 (264)
Q Consensus 192 ~~ 193 (264)
+.
T Consensus 92 ~~ 93 (103)
T 2d9p_A 92 RK 93 (103)
T ss_dssp SC
T ss_pred cc
Confidence 53
No 62
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=4.6e-18 Score=123.62 Aligned_cols=79 Identities=24% Similarity=0.332 Sum_probs=73.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEee
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLP 189 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~ 189 (264)
+...++|||+|||+++|+++|+++|++||+|..|+++.++. .++|||||+|.+.++|.+|+ .||+..+.|++|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 34678899999999999999999999999999999998876 47899999999999999999 7999999999999998
Q ss_pred CC
Q 024698 190 SK 191 (264)
Q Consensus 190 ~~ 191 (264)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 63
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.76 E-value=5.2e-18 Score=120.41 Aligned_cols=76 Identities=24% Similarity=0.384 Sum_probs=70.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCC
Q 024698 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 117 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~ 192 (264)
.+|||+|||+++|+++|+++|++||+|..++++.++. .++|||||+|.+.++|.+|+ .|||..+.|++|+|.++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 5799999999999999999999999999999998865 47899999999999999999 7999999999999999753
No 64
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=7.3e-18 Score=123.88 Aligned_cols=81 Identities=23% Similarity=0.295 Sum_probs=74.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeC
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~ 190 (264)
....++|||+|||+++|+++|+++|++||+|..|+++.++. .++|||||+|.+.++|.+|++||+..+.|+.|+|.++
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRA 86 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 34678999999999999999999999999999999998865 4789999999999999999999999999999999997
Q ss_pred CCC
Q 024698 191 KTA 193 (264)
Q Consensus 191 ~~~ 193 (264)
++.
T Consensus 87 ~~~ 89 (99)
T 2dgs_A 87 EPR 89 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 65
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.76 E-value=4.7e-18 Score=128.86 Aligned_cols=81 Identities=19% Similarity=0.362 Sum_probs=74.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 114 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
...++|||+|||+++|+++|+++|++||.|..|.+..++. .++|||||+|.+.++|.+|+ .|||..+.|+.|+|.+++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 3568999999999999999999999999999999999874 47899999999999999999 799999999999999987
Q ss_pred CCC
Q 024698 192 TAI 194 (264)
Q Consensus 192 ~~~ 194 (264)
...
T Consensus 85 ~~~ 87 (116)
T 2fy1_A 85 KPS 87 (116)
T ss_dssp CSS
T ss_pred CCC
Confidence 544
No 66
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=8.7e-18 Score=123.38 Aligned_cols=80 Identities=28% Similarity=0.330 Sum_probs=74.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeC
Q 024698 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 114 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~ 190 (264)
...++|||+|||+++|+++|+++|++||+|..|+++.++. .++|||||+|.+.++|.+|+ .||+..+.|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3578999999999999999999999999999999998874 47899999999999999999 89999999999999998
Q ss_pred CCC
Q 024698 191 KTA 193 (264)
Q Consensus 191 ~~~ 193 (264)
+..
T Consensus 86 ~~~ 88 (99)
T 1whw_A 86 TIK 88 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 67
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4e-18 Score=126.65 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=69.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhC--CceeCCeeEEEee
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLG--GTMLGYYPVRVLP 189 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln--~~~~~g~~i~V~~ 189 (264)
+...++|||+|||+++|+++|+++|++||+|.+|+|+++ +|||||+|.+.++|.+|+ .++ +..+.|++|+|.+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 88 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 88 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 446789999999999999999999999999999999876 689999999999999999 576 4789999999999
Q ss_pred CCCC
Q 024698 190 SKTA 193 (264)
Q Consensus 190 ~~~~ 193 (264)
++..
T Consensus 89 A~~~ 92 (105)
T 1sjq_A 89 SNHK 92 (105)
T ss_dssp CSSS
T ss_pred cCCC
Confidence 8643
No 68
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.1e-18 Score=128.40 Aligned_cols=81 Identities=22% Similarity=0.339 Sum_probs=75.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeC
Q 024698 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 112 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~ 190 (264)
.....++|||+|||+++|+++|+++|++||+|..|++..++..++|||||+|.+.++|.+|+ .|||..+.|+.|+|.++
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 34467899999999999999999999999999999999987778999999999999999999 79999999999999997
Q ss_pred CC
Q 024698 191 KT 192 (264)
Q Consensus 191 ~~ 192 (264)
+.
T Consensus 105 ~~ 106 (109)
T 2err_A 105 TA 106 (109)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 69
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=8.5e-18 Score=122.44 Aligned_cols=80 Identities=30% Similarity=0.466 Sum_probs=74.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
..++|||+|||+++|+++|+++|++||+|..|+++.++. .++|||||+|.+.++|.+|+ .||+..+.|++|+|.+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 568999999999999999999999999999999998865 47899999999999999999 699999999999999986
Q ss_pred CCC
Q 024698 192 TAI 194 (264)
Q Consensus 192 ~~~ 194 (264)
...
T Consensus 84 ~~~ 86 (95)
T 2dnz_A 84 ERL 86 (95)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 70
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=8.4e-18 Score=123.77 Aligned_cols=80 Identities=21% Similarity=0.348 Sum_probs=73.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeC
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~ 190 (264)
....++|||+|||+++|+++|+++|++||+|..|+++.++. .++|||||+|.+.++|.+|+ .||+..+.|+.|+|.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 34578899999999999999999999999999999998884 47799999999999999999 89999999999999997
Q ss_pred CC
Q 024698 191 KT 192 (264)
Q Consensus 191 ~~ 192 (264)
++
T Consensus 94 ~~ 95 (100)
T 2do4_A 94 NS 95 (100)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 71
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.75 E-value=4.4e-18 Score=121.83 Aligned_cols=77 Identities=29% Similarity=0.467 Sum_probs=71.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
..++|||+|||+++|+++|+++|++||+|..++++.++. .++|||||+|.+.++|.+|+ .||+..+.|+.|+|.+++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 467899999999999999999999999999999998864 47899999999999999999 799999999999999975
No 72
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3.9e-18 Score=126.22 Aligned_cols=82 Identities=26% Similarity=0.363 Sum_probs=75.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEe
Q 024698 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVL 188 (264)
Q Consensus 112 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~ 188 (264)
.....++|||+|||+++|+++|+++|++||+|..|.++.++. .++|||||+|.+.++|.+|+ .||+..+.|+.|+|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 344678999999999999999999999999999999998875 47899999999999999999 699999999999999
Q ss_pred eCCCC
Q 024698 189 PSKTA 193 (264)
Q Consensus 189 ~~~~~ 193 (264)
+++..
T Consensus 89 ~a~~~ 93 (103)
T 2dnm_A 89 VARYG 93 (103)
T ss_dssp ECSSC
T ss_pred ECCcC
Confidence 98654
No 73
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8e-18 Score=124.91 Aligned_cols=82 Identities=30% Similarity=0.384 Sum_probs=74.9
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEe
Q 024698 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVL 188 (264)
Q Consensus 112 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~ 188 (264)
.....++|||+|||+++|+++|+++|++||+|..|+++.++. .++|||||+|.+.++|.+|+ .||+..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 344678999999999999999999999999999999998874 47899999999999999999 799999999999999
Q ss_pred eCCCC
Q 024698 189 PSKTA 193 (264)
Q Consensus 189 ~~~~~ 193 (264)
+++..
T Consensus 91 ~a~~~ 95 (105)
T 1x5u_A 91 KASAH 95 (105)
T ss_dssp ETTTT
T ss_pred ECCCC
Confidence 97643
No 74
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.75 E-value=1.3e-17 Score=126.01 Aligned_cols=81 Identities=21% Similarity=0.394 Sum_probs=74.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEee
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLP 189 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~ 189 (264)
....++|||+|||+++|+++|+++|++||.|..|+|+.++. .++|||||+|.+.++|.+|+ .||+..+.|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 33568899999999999999999999999999999999874 47899999999999999999 8999999999999999
Q ss_pred CCCC
Q 024698 190 SKTA 193 (264)
Q Consensus 190 ~~~~ 193 (264)
+++.
T Consensus 102 a~~~ 105 (115)
T 2cpz_A 102 KRSK 105 (115)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 7643
No 75
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.75 E-value=1.3e-17 Score=123.84 Aligned_cols=80 Identities=28% Similarity=0.396 Sum_probs=73.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHH-HhCCceeCC---eeEEEe
Q 024698 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAAL-NLGGTMLGY---YPVRVL 188 (264)
Q Consensus 114 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al-~ln~~~~~g---~~i~V~ 188 (264)
...++|||+|||+++|+++|+++|++||.|..|+|+.++. .++|||||+|.+.++|.+|+ .||+..+.| +.|+|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 3578999999999999999999999999999999998875 46899999999999999999 799999998 999999
Q ss_pred eCCCC
Q 024698 189 PSKTA 193 (264)
Q Consensus 189 ~~~~~ 193 (264)
+++..
T Consensus 93 ~a~~~ 97 (105)
T 2dnh_A 93 FADTD 97 (105)
T ss_dssp ESCSS
T ss_pred ECccC
Confidence 97643
No 76
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.75 E-value=8.5e-18 Score=122.87 Aligned_cols=78 Identities=32% Similarity=0.482 Sum_probs=72.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCC
Q 024698 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 116 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~ 192 (264)
+++|||+|||+++|+++|+++|++||.|..++++.++. .++|||||+|.+.++|.+|+ .|||..+.|+.|+|.+++.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57899999999999999999999999999999998865 47899999999999999999 7999999999999999764
Q ss_pred C
Q 024698 193 A 193 (264)
Q Consensus 193 ~ 193 (264)
.
T Consensus 82 ~ 82 (96)
T 2x1f_A 82 S 82 (96)
T ss_dssp S
T ss_pred C
Confidence 3
No 77
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=9.5e-18 Score=124.84 Aligned_cols=81 Identities=20% Similarity=0.274 Sum_probs=73.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecC-C--CCCceEEEEEecCHHHHHHHH-Hh-CCceeCCeeEEE
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGD-P--HSVLRFAFVEFADEHGARAAL-NL-GGTMLGYYPVRV 187 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d-~--~~~~g~afV~f~~~e~a~~Al-~l-n~~~~~g~~i~V 187 (264)
....++|||+|||+++|+++|+++|++||+|..|+++.+ + ..++|||||+|.+.++|.+|+ .| |+..+.|+.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 346788999999999999999999999999999999988 3 357899999999999999999 79 999999999999
Q ss_pred eeCCCC
Q 024698 188 LPSKTA 193 (264)
Q Consensus 188 ~~~~~~ 193 (264)
.+++..
T Consensus 92 ~~a~~~ 97 (107)
T 2cph_A 92 EWADSE 97 (107)
T ss_dssp EECCCC
T ss_pred EeCCCC
Confidence 998643
No 78
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.9e-17 Score=123.78 Aligned_cols=80 Identities=24% Similarity=0.358 Sum_probs=73.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
+...++|||+|||+++|+++|+++|++||.|..|++..+.. ++|||||+|.+.++|.+|+ .||+..+.|+.|+|.+++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRG-GPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSS-SSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 34678999999999999999999999999999999976543 7899999999999999999 899999999999999986
Q ss_pred CC
Q 024698 192 TA 193 (264)
Q Consensus 192 ~~ 193 (264)
..
T Consensus 98 ~~ 99 (109)
T 1x4a_A 98 SG 99 (109)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 79
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.75 E-value=6.8e-18 Score=121.05 Aligned_cols=78 Identities=18% Similarity=0.310 Sum_probs=72.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCC---CceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS---VLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~---~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~ 190 (264)
..++|||+|||+++|+++|+++|++||.|..++++.++.+ ++|||||+|.+.++|.+|+ .|||..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 4578999999999999999999999999999999988752 7899999999999999999 69999999999999997
Q ss_pred CC
Q 024698 191 KT 192 (264)
Q Consensus 191 ~~ 192 (264)
.+
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 80
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9e-18 Score=122.52 Aligned_cols=79 Identities=24% Similarity=0.448 Sum_probs=73.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEE-EEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDC-RVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v-~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~ 190 (264)
..++|||+|||+++|+++|+++|++||.|..+ +++.++. .++|||||+|.+.++|.+|+ .||+..+.|++|+|.++
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 56899999999999999999999999999999 9998854 47899999999999999999 69999999999999997
Q ss_pred CCC
Q 024698 191 KTA 193 (264)
Q Consensus 191 ~~~ 193 (264)
++.
T Consensus 84 ~~~ 86 (96)
T 1x5t_A 84 FKK 86 (96)
T ss_dssp CCC
T ss_pred ccc
Confidence 643
No 81
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9.4e-18 Score=123.86 Aligned_cols=80 Identities=28% Similarity=0.387 Sum_probs=73.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeC
Q 024698 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 114 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~ 190 (264)
...++|||+|||+++|+++|+++|++||+|..|+++.++. .++|||||+|.+.++|.+|+ .||+..+.|+.|+|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 3578899999999999999999999999999999998865 47899999999999999999 79999999999999998
Q ss_pred CCC
Q 024698 191 KTA 193 (264)
Q Consensus 191 ~~~ 193 (264)
++.
T Consensus 90 ~~~ 92 (102)
T 2cqb_A 90 KPM 92 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 82
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=7.6e-18 Score=123.70 Aligned_cols=80 Identities=19% Similarity=0.343 Sum_probs=73.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCee-EEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCee----E
Q 024698 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVV-DCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYP----V 185 (264)
Q Consensus 114 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~-~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~----i 185 (264)
...++|||+|||+++|+++|+++|++||+|. .|+++.++. .++|||||+|.+.++|.+|+ .||+..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 3578999999999999999999999999999 999999875 47899999999999999999 69999999999 9
Q ss_pred EEeeCCCC
Q 024698 186 RVLPSKTA 193 (264)
Q Consensus 186 ~V~~~~~~ 193 (264)
+|.+++..
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 99998654
No 83
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=7.3e-18 Score=126.73 Aligned_cols=79 Identities=13% Similarity=0.232 Sum_probs=72.8
Q ss_pred CCCEEEEcCCCCCCCHHHHH---HHhhcCCCeeEEEEecCCC-----CCceEEEEEecCHHHHHHHH-HhCCceeCCeeE
Q 024698 115 VRRTVYVSDIDQNITEERLA---GLFSSCGQVVDCRVCGDPH-----SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPV 185 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~---~~F~~~G~i~~v~i~~d~~-----~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i 185 (264)
..++|||+|||+++++++|+ ++|++||+|..|+++.++. .++|||||+|.+.++|.+|+ .||+..+.|++|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 93 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTL 93 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEE
Confidence 56789999999999999999 9999999999999998875 36699999999999999999 799999999999
Q ss_pred EEeeCCCC
Q 024698 186 RVLPSKTA 193 (264)
Q Consensus 186 ~V~~~~~~ 193 (264)
+|.++++.
T Consensus 94 ~V~~a~~k 101 (111)
T 2cpi_A 94 KASLGTTK 101 (111)
T ss_dssp EEESCCCC
T ss_pred EEEecccc
Confidence 99997644
No 84
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.74 E-value=3e-18 Score=157.94 Aligned_cols=78 Identities=19% Similarity=0.299 Sum_probs=72.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
..++|||+|||+.+|+++|+++|++||.|..|.|+.++. .++|||||+|.+.++|.+|| .|||..|.|+.|.|.++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 457899999999999999999999999999999998864 47899999999999999999 899999999999999986
Q ss_pred C
Q 024698 192 T 192 (264)
Q Consensus 192 ~ 192 (264)
.
T Consensus 181 ~ 181 (437)
T 3pgw_S 181 G 181 (437)
T ss_pred C
Confidence 4
No 85
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.9e-17 Score=123.97 Aligned_cols=80 Identities=23% Similarity=0.308 Sum_probs=73.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhC------CceeCCe
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLG------GTMLGYY 183 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln------~~~~~g~ 183 (264)
....++|||+|||+++|+++|+++|++||+|..|+|+.|+. .++|||||+|.+.++|.+|+ .|| +..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~ 91 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGR 91 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCE
Confidence 34578899999999999999999999999999999998876 47899999999999999999 799 9999999
Q ss_pred eEEEeeCCC
Q 024698 184 PVRVLPSKT 192 (264)
Q Consensus 184 ~i~V~~~~~ 192 (264)
.|+|.++.+
T Consensus 92 ~l~v~~a~~ 100 (111)
T 1x4h_A 92 QLKVDLAVT 100 (111)
T ss_dssp EEEEECCCC
T ss_pred EEEEEECCC
Confidence 999999764
No 86
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.74 E-value=9.3e-18 Score=125.68 Aligned_cols=78 Identities=19% Similarity=0.236 Sum_probs=72.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
..++|||+|||+.+|+++|+++|++||.|..|.++.++. .++|||||+|.+.++|.+|+ .|||..+.|+.|+|.+++
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 104 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 104 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcc
Confidence 567899999999999999999999999999999998865 47899999999999999999 799999999999999975
Q ss_pred C
Q 024698 192 T 192 (264)
Q Consensus 192 ~ 192 (264)
.
T Consensus 105 ~ 105 (110)
T 1oo0_B 105 V 105 (110)
T ss_dssp E
T ss_pred c
Confidence 3
No 87
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.5e-17 Score=124.52 Aligned_cols=81 Identities=19% Similarity=0.271 Sum_probs=73.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEe
Q 024698 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVL 188 (264)
Q Consensus 112 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~ 188 (264)
.+...++|||+|||+++|+++|+++|++||+|..|+|+.++. .++|||||+|.+.++|.+|+ .+|+ .+.|+.|+|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 344678999999999999999999999999999999998865 47899999999999999999 7888 8999999999
Q ss_pred eCCCC
Q 024698 189 PSKTA 193 (264)
Q Consensus 189 ~~~~~ 193 (264)
++...
T Consensus 92 ~a~~~ 96 (116)
T 2cqd_A 92 LAYLG 96 (116)
T ss_dssp ESTTT
T ss_pred EcccC
Confidence 98654
No 88
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9.7e-18 Score=124.67 Aligned_cols=78 Identities=22% Similarity=0.304 Sum_probs=72.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
..++|||+|||+++|+++|+++|++||+|..|.++.++. .++|||||+|.+.++|.+|+ .|||..+.|+.|+|.+++
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 101 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 101 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeec
Confidence 467899999999999999999999999999999998876 36899999999999999999 799999999999999975
Q ss_pred C
Q 024698 192 T 192 (264)
Q Consensus 192 ~ 192 (264)
+
T Consensus 102 ~ 102 (106)
T 1p27_B 102 V 102 (106)
T ss_dssp E
T ss_pred C
Confidence 4
No 89
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=122.37 Aligned_cols=79 Identities=25% Similarity=0.354 Sum_probs=72.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeE--------EEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCcee
Q 024698 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVD--------CRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTML 180 (264)
Q Consensus 112 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~ 180 (264)
.+....+|||+|||+++|+++|+++|++||.|.. ++++.++. .++|||||+|.+.++|.+|+ .|||..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3446789999999999999999999999999999 99998865 47899999999999999999 7999999
Q ss_pred CCeeEEEeeC
Q 024698 181 GYYPVRVLPS 190 (264)
Q Consensus 181 ~g~~i~V~~~ 190 (264)
.|+.|+|.++
T Consensus 89 ~g~~l~V~~A 98 (99)
T 2la6_A 89 SGNPIKVSFA 98 (99)
T ss_dssp SSSBCEEEEC
T ss_pred CCcEEEEEec
Confidence 9999999985
No 90
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=3e-17 Score=121.49 Aligned_cols=79 Identities=23% Similarity=0.394 Sum_probs=72.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeCC
Q 024698 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 114 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~~ 191 (264)
...++|||+|||+++|+++|+++|++|| |..|+++.++. .++|||||+|.+.++|.+|+.||+..+.|+.|+|.+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAE 91 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEec
Confidence 3568899999999999999999999997 99999999875 47899999999999999999999999999999999976
Q ss_pred CC
Q 024698 192 TA 193 (264)
Q Consensus 192 ~~ 193 (264)
..
T Consensus 92 ~~ 93 (103)
T 2dng_A 92 GR 93 (103)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 91
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.73 E-value=3e-18 Score=126.48 Aligned_cols=77 Identities=22% Similarity=0.298 Sum_probs=72.1
Q ss_pred CCCEEEEcCCCC------CCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCC-ee
Q 024698 115 VRRTVYVSDIDQ------NITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGY-YP 184 (264)
Q Consensus 115 ~~~~lfV~nLp~------~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g-~~ 184 (264)
..++|||+|||+ ++++++|+++|++||+|.+|+|+.|+. .++|||||+|.+.++|.+|+ .|||..+.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 467899999999 999999999999999999999998886 37899999999999999999 799999999 99
Q ss_pred EEEeeCC
Q 024698 185 VRVLPSK 191 (264)
Q Consensus 185 i~V~~~~ 191 (264)
|+|.++.
T Consensus 85 l~V~~a~ 91 (100)
T 3ns6_A 85 LFLYTMK 91 (100)
T ss_dssp CEEEESH
T ss_pred EEEEECc
Confidence 9999864
No 92
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.6e-18 Score=123.84 Aligned_cols=80 Identities=24% Similarity=0.386 Sum_probs=73.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeC
Q 024698 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 114 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~ 190 (264)
...++|||+|||+++|+++|+++|++||+|..|+++.++. .++|||||+|.+.++|.+|+ .||+..+.|+.|+|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3578999999999999999999999999999999998865 47899999999999999999 89999999999999997
Q ss_pred CCC
Q 024698 191 KTA 193 (264)
Q Consensus 191 ~~~ 193 (264)
+..
T Consensus 90 ~~~ 92 (102)
T 1x5s_A 90 GKS 92 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 643
No 93
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=4.9e-17 Score=122.40 Aligned_cols=80 Identities=25% Similarity=0.342 Sum_probs=73.6
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 114 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
...++|||+|||+++|+++|+++|++||+|..|+|+.++. .++|||||+|.+.++|.+|+ .||+..+.|+.|+|.+++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 3568899999999999999999999999999999998875 46899999999999999999 699999999999999986
Q ss_pred CC
Q 024698 192 TA 193 (264)
Q Consensus 192 ~~ 193 (264)
..
T Consensus 93 ~~ 94 (114)
T 2do0_A 93 RA 94 (114)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 94
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=124.82 Aligned_cols=82 Identities=27% Similarity=0.441 Sum_probs=74.3
Q ss_pred cCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEE
Q 024698 111 REDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRV 187 (264)
Q Consensus 111 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V 187 (264)
+.+...++|||+|||+.+|+++|+++|++||+|..|+++.++. .++|||||+|.+.++|.+|+ .|||..+.|+.|+|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 3344678999999999999999999999999999999998865 37899999999999999999 79999999999999
Q ss_pred eeCCC
Q 024698 188 LPSKT 192 (264)
Q Consensus 188 ~~~~~ 192 (264)
.++++
T Consensus 101 ~~a~~ 105 (108)
T 2jrs_A 101 GHVTE 105 (108)
T ss_dssp ECSCS
T ss_pred EEccc
Confidence 98753
No 95
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.73 E-value=1.1e-17 Score=119.38 Aligned_cols=71 Identities=14% Similarity=0.150 Sum_probs=66.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeC
Q 024698 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 116 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~ 190 (264)
+..|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.++++|.+|+ .||+..+.||+|+|..+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 56699999999999999999999999999999965 6899999999999999999 89999999999999964
No 96
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.73 E-value=4.3e-18 Score=118.61 Aligned_cols=73 Identities=21% Similarity=0.238 Sum_probs=68.5
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeC
Q 024698 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 118 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~ 190 (264)
+|||+|||+++|+++|+++|++||+|..++++.++. .++|||||+|.+.++|.+|+++|+..+.|++|+|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 489999999999999999999999999999998874 4789999999999999999999999999999999873
No 97
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.8e-17 Score=121.56 Aligned_cols=75 Identities=20% Similarity=0.215 Sum_probs=68.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-Hh--CCceeCCeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NL--GGTMLGYYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~l--n~~~~~g~~i~V~~~~ 191 (264)
..++|||+|||+++|+++|+++|++||.|..|.++++ +|||||+|.+.++|.+|+ .| ++..+.|++|+|.+++
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 5689999999999999999999999999999999875 689999999999999999 55 6788999999999986
Q ss_pred CC
Q 024698 192 TA 193 (264)
Q Consensus 192 ~~ 193 (264)
..
T Consensus 90 ~~ 91 (101)
T 2cq1_A 90 HK 91 (101)
T ss_dssp CS
T ss_pred cc
Confidence 43
No 98
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.73 E-value=1.4e-17 Score=123.71 Aligned_cols=82 Identities=22% Similarity=0.349 Sum_probs=74.4
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCcee---CCeeE
Q 024698 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTML---GYYPV 185 (264)
Q Consensus 112 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~---~g~~i 185 (264)
.+...++|||+|||+++|+++|+++|++||+|..|+++.|+. .++|||||+|.+.++|.+|+ .||+..+ .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 344678999999999999999999999999999999998875 47899999999999999999 7999998 89999
Q ss_pred EEeeCCCC
Q 024698 186 RVLPSKTA 193 (264)
Q Consensus 186 ~V~~~~~~ 193 (264)
+|.+++..
T Consensus 89 ~v~~a~~~ 96 (106)
T 2dgp_A 89 QVKPADSE 96 (106)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 99997643
No 99
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.73 E-value=4.2e-18 Score=120.64 Aligned_cols=73 Identities=21% Similarity=0.250 Sum_probs=66.7
Q ss_pred CCEEEEcCCCCCC------CHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCe-eEEE
Q 024698 116 RRTVYVSDIDQNI------TEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYY-PVRV 187 (264)
Q Consensus 116 ~~~lfV~nLp~~~------te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~-~i~V 187 (264)
+++|||+|||+.+ |+++|+++|++||+|..++++++.+.++|||||+|.+.++|.+|+ .|||..+.|+ +|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 3689999999999 789999999999999999998655568999999999999999999 7999999999 8876
Q ss_pred e
Q 024698 188 L 188 (264)
Q Consensus 188 ~ 188 (264)
+
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 100
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.73 E-value=1.3e-17 Score=126.45 Aligned_cols=79 Identities=24% Similarity=0.394 Sum_probs=72.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEee
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLP 189 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~ 189 (264)
....++|||+|||+++|+++|+++|++||+|..|+++.++. .++|||||+|.+.++|.+|+ .|||..+.|+.|+|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 33568899999999999999999999999999999998865 47899999999999999999 7999999999999998
Q ss_pred CC
Q 024698 190 SK 191 (264)
Q Consensus 190 ~~ 191 (264)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 63
No 101
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.4e-18 Score=121.48 Aligned_cols=77 Identities=17% Similarity=0.278 Sum_probs=71.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
..++|||+|||+++|+++|+++|++||+|..++++.++. .++|||||+|.+.++|.+|+ .|||..+.|+.|+|.+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 568999999999999999999999999999999998865 47899999999999999999 799999999999998754
No 102
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.1e-17 Score=121.60 Aligned_cols=78 Identities=24% Similarity=0.403 Sum_probs=72.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC---CCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH---SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~---~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~~ 191 (264)
..++|||+|||+++|+++|+++|++|| |..|+|+.++. .++|||||+|.+.++|.+|+.||+..+.|+.|+|.+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 92 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKRIRVDVAD 92 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcEEEEEEcc
Confidence 568999999999999999999999999 99999998874 47899999999999999999999999999999999976
Q ss_pred CC
Q 024698 192 TA 193 (264)
Q Consensus 192 ~~ 193 (264)
..
T Consensus 93 ~~ 94 (104)
T 1wi8_A 93 QA 94 (104)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 103
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.72 E-value=9e-18 Score=130.85 Aligned_cols=79 Identities=18% Similarity=0.192 Sum_probs=72.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCC---eeEEEEecCCC-CCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEe
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQ---VVDCRVCGDPH-SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVL 188 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~---i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~ 188 (264)
....++|||+|||+++|+++|+++|++||. |..|+|+.|+. .++|||||+|.+.++|.+|+++|+..+.||.|+|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALKKDRESMGHRYIEVF 120 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHTTTEEESSSSEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCEECCEEEEEE
Confidence 345788999999999999999999999999 89999998876 57899999999999999999999999999999999
Q ss_pred eCC
Q 024698 189 PSK 191 (264)
Q Consensus 189 ~~~ 191 (264)
++.
T Consensus 121 ~a~ 123 (136)
T 2hgl_A 121 KSH 123 (136)
T ss_dssp ECC
T ss_pred ECC
Confidence 853
No 104
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.5e-17 Score=123.10 Aligned_cols=82 Identities=26% Similarity=0.348 Sum_probs=74.3
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCee--------EEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCcee
Q 024698 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVV--------DCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTML 180 (264)
Q Consensus 112 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--------~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~ 180 (264)
.....++|||+|||+++|+++|+++|++||.|. .|+|+.++. .++|||||+|.+.++|.+|+ .||+..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 344678999999999999999999999999999 699998865 47899999999999999999 7999999
Q ss_pred CCeeEEEeeCCCC
Q 024698 181 GYYPVRVLPSKTA 193 (264)
Q Consensus 181 ~g~~i~V~~~~~~ 193 (264)
.|+.|+|.+++..
T Consensus 91 ~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 91 QGSKLKVSLARKK 103 (113)
T ss_dssp TTEECEEECSSCC
T ss_pred CCCEEEEEECCCC
Confidence 9999999997653
No 105
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=124.47 Aligned_cols=78 Identities=19% Similarity=0.228 Sum_probs=71.4
Q ss_pred CCCCEEEEcCCCCCC------CHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCe-eE
Q 024698 114 SVRRTVYVSDIDQNI------TEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYY-PV 185 (264)
Q Consensus 114 ~~~~~lfV~nLp~~~------te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~-~i 185 (264)
...++|||+|||+.+ |+++|+++|++||+|..|++++..+.++|||||+|.+.++|.+|+ .|||..+.|+ +|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 356899999999999 889999999999999999998555568999999999999999999 7999999998 99
Q ss_pred EEeeCC
Q 024698 186 RVLPSK 191 (264)
Q Consensus 186 ~V~~~~ 191 (264)
+|.++.
T Consensus 93 ~V~~a~ 98 (105)
T 2nlw_A 93 RVNLFT 98 (105)
T ss_dssp EEECSC
T ss_pred EEEEcc
Confidence 999865
No 106
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3e-17 Score=121.61 Aligned_cols=81 Identities=23% Similarity=0.378 Sum_probs=73.7
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhc-CCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHH-HhCCce-eCCeeEEEe
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSS-CGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAAL-NLGGTM-LGYYPVRVL 188 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~-~G~i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al-~ln~~~-~~g~~i~V~ 188 (264)
+...++|||+|||+++|+++|+++|++ ||.|..|+|+.++. .++|||||+|.+.++|.+|+ .||+.. +.|+.|+|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 335688999999999999999999999 99999999999874 37899999999999999999 799999 999999999
Q ss_pred eCCCC
Q 024698 189 PSKTA 193 (264)
Q Consensus 189 ~~~~~ 193 (264)
+++..
T Consensus 86 ~a~~~ 90 (104)
T 2dhg_A 86 VAIPK 90 (104)
T ss_dssp BCCCC
T ss_pred EccCC
Confidence 97543
No 107
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7e-17 Score=119.43 Aligned_cols=81 Identities=19% Similarity=0.190 Sum_probs=72.7
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEee
Q 024698 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLP 189 (264)
Q Consensus 112 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~ 189 (264)
.....++|||+|||+++|+++|+++|++||+|..|+++.++. .++|||||+|.+.++|.+|++ ++..+.|+.|+|.+
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEEEEEEC
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeEEEEEe
Confidence 344678899999999999999999999999999999999865 478999999999999999997 57899999999999
Q ss_pred CCCC
Q 024698 190 SKTA 193 (264)
Q Consensus 190 ~~~~ 193 (264)
+...
T Consensus 90 a~~~ 93 (103)
T 2cqg_A 90 PNSK 93 (103)
T ss_dssp CCTT
T ss_pred cCCC
Confidence 7643
No 108
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.72 E-value=1.9e-17 Score=127.95 Aligned_cols=80 Identities=28% Similarity=0.272 Sum_probs=74.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEee
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLP 189 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~ 189 (264)
+...++|||+|||+++|+++|+++|++||+|..|+++.|+. .++|||||+|.+.++|.+|+ .||+..+.|++|+|.+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~ 122 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDF 122 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44678899999999999999999999999999999998875 47899999999999999999 7999999999999999
Q ss_pred CCC
Q 024698 190 SKT 192 (264)
Q Consensus 190 ~~~ 192 (264)
+++
T Consensus 123 a~~ 125 (129)
T 2kxn_B 123 SIT 125 (129)
T ss_dssp CSS
T ss_pred ecC
Confidence 754
No 109
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.72 E-value=3.8e-17 Score=121.62 Aligned_cols=78 Identities=22% Similarity=0.289 Sum_probs=72.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 114 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
...++|||+|||+.+|+++|+++|++||.|..|+++.++. .++|||||+|.+.++|.+|+ .||+..+.|+.|+|.++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 3568899999999999999999999999999999998875 46899999999999999999 699999999999999853
No 110
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.72 E-value=2.4e-18 Score=134.61 Aligned_cols=119 Identities=16% Similarity=0.139 Sum_probs=71.2
Q ss_pred ceEEeccCCcccccchHHHHHhhccCCCcCCCCc-chhcccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEec
Q 024698 72 NFADDNKQSAIDNFNNNRRRRNNFNQGRKRLSGR-AFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCG 150 (264)
Q Consensus 72 gf~fV~f~~~~~a~~~A~~a~~~~~~g~~~~~~~-~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~ 150 (264)
|+|+.++..++.+. .+......+.+|...-... .......+...++|||+|||+++|+++|+++|++|| |..|+|+.
T Consensus 2 ~~~~~~~~~~~~~~-~~~~~~~~~~gg~~~g~~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~ 79 (139)
T 2hgn_A 2 GSSHHHHHHSSGLV-PRGSHMASMTGGQQMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEI 79 (139)
T ss_dssp --------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCC
T ss_pred CcccccccCccccc-hhcccchhccCCCCCCCCCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEE
Confidence 67888888888444 2222222222222211111 011112233567899999999999999999999999 77999998
Q ss_pred CCC-CCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeCCC
Q 024698 151 DPH-SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 151 d~~-~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~~~ 192 (264)
|+. .++|||||+|.+.++|.+||++|+..+.||.|+|.++..
T Consensus 80 d~~g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~i~V~~a~~ 122 (139)
T 2hgn_A 80 GPDGRVTGEADVEFATHEEAVAAMSKDRANMQHRYIELFLNST 122 (139)
T ss_dssp SSSSCSSCCCEEECSHHHHHHHHTTCCSCSSSSCCCCCEECCC
T ss_pred CCCCCCceEEEEEeCCHHHHHHHHhhCCCEECCEEEEEEECCC
Confidence 876 588999999999999999999999999999999998754
No 111
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.7e-17 Score=122.13 Aligned_cols=82 Identities=26% Similarity=0.372 Sum_probs=74.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEee
Q 024698 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLP 189 (264)
Q Consensus 112 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~ 189 (264)
.+...++|||+|||+++|+++|+++|++||+|..|+++.++. .++|||||+|.+.++|.+|++.|+..+.|+.|+|.+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKP 91 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 344678999999999999999999999999999999999865 478999999999999999994499999999999999
Q ss_pred CCCC
Q 024698 190 SKTA 193 (264)
Q Consensus 190 ~~~~ 193 (264)
+++.
T Consensus 92 a~~~ 95 (105)
T 2dh8_A 92 CTPR 95 (105)
T ss_dssp SCCS
T ss_pred ccCC
Confidence 7643
No 112
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.72 E-value=3.5e-17 Score=125.14 Aligned_cols=80 Identities=30% Similarity=0.547 Sum_probs=73.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeCCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~~~ 192 (264)
..++|||+|||+++|+++|+++|++||+|..|+++.++. .++|||||+|.+.++|.+|++|||..+.|+.|+|.+++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECEEEESSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECCC
Confidence 457899999999999999999999999999999998854 478999999999999999999999999999999999875
Q ss_pred CC
Q 024698 193 AI 194 (264)
Q Consensus 193 ~~ 194 (264)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 113
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.72 E-value=8.6e-17 Score=123.07 Aligned_cols=80 Identities=23% Similarity=0.282 Sum_probs=73.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~ 192 (264)
..++|||+|||+.+++++|+++|++||+|..|++..++. .++|||||+|.+.++|.+|+ .||+..+.|+.|+|.++..
T Consensus 34 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 113 (124)
T 2kt5_A 34 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 113 (124)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCC
Confidence 567899999999999999999999999999999998874 37899999999999999999 6999999999999999865
Q ss_pred CC
Q 024698 193 AI 194 (264)
Q Consensus 193 ~~ 194 (264)
..
T Consensus 114 ~~ 115 (124)
T 2kt5_A 114 QI 115 (124)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 114
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=1.8e-17 Score=124.64 Aligned_cols=77 Identities=14% Similarity=0.079 Sum_probs=70.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCC-CeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 114 SVRRTVYVSDIDQNITEERLAGLFSSCG-QVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 114 ~~~~~lfV~nLp~~~te~~L~~~F~~~G-~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
....+|||+|||+++|+++|+++|++|| +|..+.+..+ .++|||||+|.+.++|.+|+ .|||..+.|+.|+|.+++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~--~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~ 103 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR--DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDD 103 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC--SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC--CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECC
Confidence 3567899999999999999999999999 9999988543 37899999999999999999 799999999999999975
Q ss_pred C
Q 024698 192 T 192 (264)
Q Consensus 192 ~ 192 (264)
.
T Consensus 104 ~ 104 (111)
T 2jvr_A 104 N 104 (111)
T ss_dssp C
T ss_pred C
Confidence 3
No 115
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5.5e-17 Score=117.27 Aligned_cols=79 Identities=22% Similarity=0.363 Sum_probs=72.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeCC
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~~ 191 (264)
+...++|||+|||+++|+++|+++|++| .|..|+++.+.. .++|||||+|.+.++|.+|++||+..+.|+.|+|.+++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEES
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECC
Confidence 3457899999999999999999999999 999999999844 47899999999999999999999999999999999975
Q ss_pred C
Q 024698 192 T 192 (264)
Q Consensus 192 ~ 192 (264)
.
T Consensus 86 ~ 86 (91)
T 2dgw_A 86 S 86 (91)
T ss_dssp S
T ss_pred c
Confidence 3
No 116
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.9e-17 Score=116.40 Aligned_cols=75 Identities=24% Similarity=0.330 Sum_probs=68.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-Hh-CCceeCCeeEEEeeC
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NL-GGTMLGYYPVRVLPS 190 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~l-n~~~~~g~~i~V~~~ 190 (264)
+...++|||+|||+++|+++|+++|++||+|..+++.++ +|||||+|.+.++|.+|+ .| |+..+.|++|+|.++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 345688999999999999999999999999999999864 689999999999999999 58 999999999999986
Q ss_pred C
Q 024698 191 K 191 (264)
Q Consensus 191 ~ 191 (264)
+
T Consensus 85 k 85 (85)
T 2ytc_A 85 R 85 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 117
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6e-17 Score=121.15 Aligned_cols=78 Identities=26% Similarity=0.415 Sum_probs=72.1
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeC
Q 024698 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 112 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~ 190 (264)
.+...++|||+|||+.+|+++|+++|++||.|..|++..+ +|||||+|.+.++|.+|+ .||+..+.|+.|+|.++
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 3446789999999999999999999999999999999877 689999999999999999 89999999999999998
Q ss_pred CCC
Q 024698 191 KTA 193 (264)
Q Consensus 191 ~~~ 193 (264)
+..
T Consensus 97 ~~~ 99 (109)
T 1x4g_A 97 KES 99 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 118
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=7.2e-17 Score=116.47 Aligned_cols=74 Identities=26% Similarity=0.451 Sum_probs=69.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCC
Q 024698 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 114 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~ 192 (264)
...++|||+|||+++|+++|+++|++||+|..|++. +|||||+|.+.++|.+|+ .||+..+.|+.|+|.+++.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 357899999999999999999999999999999996 689999999999999999 8999999999999999865
Q ss_pred C
Q 024698 193 A 193 (264)
Q Consensus 193 ~ 193 (264)
.
T Consensus 80 ~ 80 (90)
T 2dnq_A 80 K 80 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 119
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.71 E-value=3e-17 Score=124.83 Aligned_cols=78 Identities=19% Similarity=0.207 Sum_probs=72.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCC---eeEEEEecCCC-CCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEee
Q 024698 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQ---VVDCRVCGDPH-SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLP 189 (264)
Q Consensus 114 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~---i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~ 189 (264)
...++|||+|||+++|+++|+++|++||. |..|+|+.++. .++|||||+|.+.++|.+|+++|+..+.||.|+|.+
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~ 94 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALKKDRESMGHRYIEVFK 94 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGGGTTEEETTEEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEE
Confidence 35688999999999999999999999999 89999998876 578999999999999999999999999999999998
Q ss_pred CC
Q 024698 190 SK 191 (264)
Q Consensus 190 ~~ 191 (264)
+.
T Consensus 95 a~ 96 (118)
T 2db1_A 95 SH 96 (118)
T ss_dssp EC
T ss_pred CC
Confidence 64
No 120
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.3e-17 Score=122.14 Aligned_cols=74 Identities=26% Similarity=0.315 Sum_probs=67.5
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCC--ceeCCeeEEEeeC
Q 024698 115 VRRTVYVSDIDQ-NITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGG--TMLGYYPVRVLPS 190 (264)
Q Consensus 115 ~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~--~~~~g~~i~V~~~ 190 (264)
..++|||+|||+ ++|+++|+++|++||+|.+|+|+++ +|||||+|.+.++|.+|+ .||+ ..+.|++|+|.++
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 89 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS 89 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence 578999999999 9999999999999999999999765 479999999999999999 6775 5699999999998
Q ss_pred CC
Q 024698 191 KT 192 (264)
Q Consensus 191 ~~ 192 (264)
+.
T Consensus 90 ~~ 91 (102)
T 1x4d_A 90 QK 91 (102)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 121
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.8e-17 Score=122.82 Aligned_cols=80 Identities=23% Similarity=0.203 Sum_probs=71.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeCC
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~~ 191 (264)
+...++|||+|||+++|+++|+++|++||. ..|+|+.|+. .++|||||+|.+.++|.+||++|+..+.||.|+|.++.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNS 90 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 345688999999999999999999999994 5999998875 47899999999999999999889999999999999875
Q ss_pred CC
Q 024698 192 TA 193 (264)
Q Consensus 192 ~~ 193 (264)
..
T Consensus 91 ~~ 92 (102)
T 1wez_A 91 TA 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 122
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.71 E-value=3.8e-17 Score=130.31 Aligned_cols=77 Identities=27% Similarity=0.330 Sum_probs=70.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCC--CeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEee
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCG--QVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLP 189 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G--~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~ 189 (264)
..++|||+|||+++|+++|+++|++|| .|..|+|+.|+. .++|||||+|.+.++|.+|+ .|||..+.|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457899999999999999999999999 999999999865 47899999999999999999 7999999999999998
Q ss_pred CC
Q 024698 190 SK 191 (264)
Q Consensus 190 ~~ 191 (264)
+.
T Consensus 134 a~ 135 (156)
T 3n9u_C 134 AT 135 (156)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 123
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.71 E-value=6.1e-17 Score=126.23 Aligned_cols=82 Identities=23% Similarity=0.368 Sum_probs=75.0
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEe
Q 024698 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVL 188 (264)
Q Consensus 112 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~ 188 (264)
.+...++|||+|||+++|+++|+++|++||+|..|+++.++.+ ++|||||+|.+.++|.+|+ .||+..+.|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3446789999999999999999999999999999999988763 6899999999999999999 799999999999999
Q ss_pred eCCCC
Q 024698 189 PSKTA 193 (264)
Q Consensus 189 ~~~~~ 193 (264)
+++..
T Consensus 118 ~a~~~ 122 (139)
T 1u6f_A 118 LAASG 122 (139)
T ss_dssp ESSCC
T ss_pred ECCCC
Confidence 98654
No 124
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=5.8e-17 Score=116.96 Aligned_cols=75 Identities=27% Similarity=0.464 Sum_probs=68.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
+...++|||+|||+++|+++|+++|++||.|..+++. ++||||+|.+.++|.+|+ .||+..+.|+.|+|.+++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 3457889999999999999999999999999999995 459999999999999999 799999999999999986
Q ss_pred CC
Q 024698 192 TA 193 (264)
Q Consensus 192 ~~ 193 (264)
..
T Consensus 80 ~~ 81 (90)
T 2dnp_A 80 KG 81 (90)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 125
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.5e-17 Score=123.78 Aligned_cols=75 Identities=19% Similarity=0.229 Sum_probs=68.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhC--CceeCCeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLG--GTMLGYYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln--~~~~~g~~i~V~~~~ 191 (264)
..++|||+|||+++|+++|+++|++||+|.+|+|+++ +|||||+|.+.++|.+|+ .++ +..+.|++|+|.+++
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~ 105 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSN 105 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEcc
Confidence 5688999999999999999999999999999999876 689999999999999999 677 468999999999986
Q ss_pred CC
Q 024698 192 TA 193 (264)
Q Consensus 192 ~~ 193 (264)
..
T Consensus 106 ~k 107 (119)
T 2ad9_A 106 HK 107 (119)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 126
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=1.1e-16 Score=115.96 Aligned_cols=75 Identities=23% Similarity=0.361 Sum_probs=69.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
+...++|||+|||+++|+++|+++|++||.|..|++. ++||||+|.+.++|.+|+ .||+..+.|+.|+|.+++
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 3467889999999999999999999999999999995 459999999999999999 799999999999999986
Q ss_pred CC
Q 024698 192 TA 193 (264)
Q Consensus 192 ~~ 193 (264)
..
T Consensus 81 ~~ 82 (92)
T 2dgt_A 81 SR 82 (92)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 127
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.9e-17 Score=124.00 Aligned_cols=79 Identities=20% Similarity=0.147 Sum_probs=72.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCe-eEEEEecCCC-CCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeC
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQV-VDCRVCGDPH-SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i-~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~ 190 (264)
+...++|||+|||+++|+++|+++|++||.| ..|+|+.|+. .++|||||+|.+.++|.+||++|+..+.|+.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVHVV 91 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEEEC
Confidence 3467899999999999999999999999999 8999998885 4789999999999999999966999999999999987
Q ss_pred C
Q 024698 191 K 191 (264)
Q Consensus 191 ~ 191 (264)
.
T Consensus 92 ~ 92 (114)
T 2cpy_A 92 T 92 (114)
T ss_dssp C
T ss_pred C
Confidence 4
No 128
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.7e-16 Score=118.58 Aligned_cols=74 Identities=22% Similarity=0.198 Sum_probs=69.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCC-----eeEEEe
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGY-----YPVRVL 188 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g-----~~i~V~ 188 (264)
..++|||+|||+++|+++|+++|++||+|..|+|+.+ |||||+|.+.++|.+|| .||+..+.| +.|+|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 5678999999999999999999999999999999887 89999999999999999 799999999 999999
Q ss_pred eCCCC
Q 024698 189 PSKTA 193 (264)
Q Consensus 189 ~~~~~ 193 (264)
++++.
T Consensus 89 ~a~~~ 93 (108)
T 1x4c_A 89 VDGPR 93 (108)
T ss_dssp ESSCC
T ss_pred eCCCC
Confidence 98653
No 129
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.5e-17 Score=120.72 Aligned_cols=78 Identities=14% Similarity=0.158 Sum_probs=71.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
..++|||+|||+++|+++|+++|++||.|..+.++.++. .++|||||+|.+.++|.+|+ .||+..+.|+.|+|.+++
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 93 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGS 93 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcC
Confidence 467899999999999999999999999998887776655 47899999999999999999 899999999999999975
Q ss_pred C
Q 024698 192 T 192 (264)
Q Consensus 192 ~ 192 (264)
.
T Consensus 94 ~ 94 (98)
T 2cqp_A 94 G 94 (98)
T ss_dssp C
T ss_pred C
Confidence 3
No 130
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.71 E-value=7e-17 Score=121.01 Aligned_cols=81 Identities=23% Similarity=0.343 Sum_probs=70.2
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEee
Q 024698 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLP 189 (264)
Q Consensus 112 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~ 189 (264)
.+...++|||+|||+++|+++|+++|++||+|..|+++.++. .++|||||+|.+.++|.+|++..+..+.|+.|+|.+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKV 100 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEE
Confidence 344678899999999999999999999999999999999875 478999999999999999995556999999999999
Q ss_pred CCC
Q 024698 190 SKT 192 (264)
Q Consensus 190 ~~~ 192 (264)
+..
T Consensus 101 a~~ 103 (109)
T 2rs2_A 101 AFP 103 (109)
T ss_dssp CCC
T ss_pred ccC
Confidence 753
No 131
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=4.5e-17 Score=119.64 Aligned_cols=77 Identities=23% Similarity=0.303 Sum_probs=70.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
....++|||+|||+.+|+++|+++|++||+|..|++.++ +|||||+|.+.++|.+|+ .||+..+.|+.|+|.+++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 346789999999999999999999999999999999754 689999999999999999 899999999999999986
Q ss_pred CC
Q 024698 192 TA 193 (264)
Q Consensus 192 ~~ 193 (264)
+.
T Consensus 88 ~~ 89 (99)
T 2cpj_A 88 HS 89 (99)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 132
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.7e-17 Score=121.71 Aligned_cols=78 Identities=32% Similarity=0.476 Sum_probs=72.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
..++|||+|||+.+|+++|+++|++||.|..++++.++. .++|||||+|.+.++|.+|+ .|||..+.|+.|+|.+++
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 357899999999999999999999999999999998864 37899999999999999999 799999999999999975
Q ss_pred C
Q 024698 192 T 192 (264)
Q Consensus 192 ~ 192 (264)
.
T Consensus 87 ~ 87 (104)
T 1p1t_A 87 S 87 (104)
T ss_dssp C
T ss_pred C
Confidence 3
No 133
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9e-17 Score=121.46 Aligned_cols=79 Identities=23% Similarity=0.340 Sum_probs=72.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeCCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~~~ 192 (264)
..++|||+|||+++|+++|+++|++||.|..|+|+.++. .++|||||+|.+.++|.+|++.++..+.|+.|+|.++.+
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCC
Confidence 357899999999999999999999999999999999865 478999999999999999995599999999999999764
Q ss_pred C
Q 024698 193 A 193 (264)
Q Consensus 193 ~ 193 (264)
.
T Consensus 106 ~ 106 (116)
T 1x4b_A 106 R 106 (116)
T ss_dssp C
T ss_pred C
Confidence 3
No 134
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.70 E-value=6.9e-17 Score=118.82 Aligned_cols=74 Identities=23% Similarity=0.212 Sum_probs=67.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCce--eCCeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTM--LGYYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~--~~g~~i~V~~~~ 191 (264)
.+++|||+|||+++|+++|+++|++||+|.++++++ .||||||+|.+.++|.+|+ .||+.. +.|++|+|.+++
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 578999999999999999999999999999999975 4689999999999999999 788775 789999999976
Q ss_pred C
Q 024698 192 T 192 (264)
Q Consensus 192 ~ 192 (264)
.
T Consensus 96 ~ 96 (100)
T 3r27_A 96 S 96 (100)
T ss_dssp C
T ss_pred c
Confidence 4
No 135
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=8.3e-17 Score=117.79 Aligned_cols=74 Identities=23% Similarity=0.306 Sum_probs=69.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeC--CeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLG--YYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~--g~~i~V~~~~ 191 (264)
..++|||+|||+++|+++|+++|++||+|..|.+..+ +|||||+|.+.++|.+|+ .||+..+. |+.|+|.+++
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 5678999999999999999999999999999999754 689999999999999999 79999999 9999999976
Q ss_pred C
Q 024698 192 T 192 (264)
Q Consensus 192 ~ 192 (264)
+
T Consensus 92 ~ 92 (97)
T 1why_A 92 S 92 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 136
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.70 E-value=8.5e-17 Score=127.97 Aligned_cols=81 Identities=26% Similarity=0.290 Sum_probs=74.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEee
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLP 189 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~ 189 (264)
....++|||+|||+++|+++|+++|++||+|..|.|+.++. .++|||||+|.+.++|.+|+ .||+..+.|+.|+|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999876 37899999999999999999 6999999999999999
Q ss_pred CCCC
Q 024698 190 SKTA 193 (264)
Q Consensus 190 ~~~~ 193 (264)
++..
T Consensus 116 a~~~ 119 (156)
T 1h2v_Z 116 DAGF 119 (156)
T ss_dssp ESCC
T ss_pred CCCC
Confidence 8653
No 137
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=5.5e-17 Score=118.78 Aligned_cols=76 Identities=25% Similarity=0.357 Sum_probs=68.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCC
Q 024698 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 114 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~ 192 (264)
...++|||+|||+++|+++|+++|++||.|. ++++.+ .++|||||+|.+.++|.+|+ .|||..+.|+.|+|.++++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ--GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC--CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 3568999999999999999999999999997 666654 46899999999999999999 8999999999999999754
No 138
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=5.5e-17 Score=119.57 Aligned_cols=75 Identities=20% Similarity=0.247 Sum_probs=69.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
+...++|||+|||+++|+++|+++|++||.|.++++. .++|||||+|.+.++|.+|+ .|||..+.|+.|+|.+++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 99 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY----PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGK 99 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe----cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEecc
Confidence 3356899999999999999999999999999999997 35789999999999999999 899999999999999875
No 139
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.7e-17 Score=120.41 Aligned_cols=79 Identities=20% Similarity=0.187 Sum_probs=71.2
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeE-EEEecCCC-CCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeCC
Q 024698 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVD-CRVCGDPH-SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 114 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~-v~i~~d~~-~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~~ 191 (264)
....+|||+|||+++|+++|+++|++||.|.. |+|+.+.. .++|||||+|.++++|.+|++.|+..+.||.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v~~~~ 92 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEIFKSS 92 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEEEECC
Confidence 35688999999999999999999999999987 88888744 47899999999999999999559999999999999865
Q ss_pred C
Q 024698 192 T 192 (264)
Q Consensus 192 ~ 192 (264)
.
T Consensus 93 ~ 93 (104)
T 1wg5_A 93 R 93 (104)
T ss_dssp T
T ss_pred H
Confidence 3
No 140
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.4e-16 Score=115.76 Aligned_cols=73 Identities=26% Similarity=0.442 Sum_probs=68.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcC--CCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSC--GQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~--G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
..++|||+|||+++|+++|+++|++| |.|..+++ .+|||||+|.+.++|.+|+ .||+..+.|+.|+|.+++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK------IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE------CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE------eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 56899999999999999999999999 99999987 4689999999999999999 699999999999999986
Q ss_pred CC
Q 024698 192 TA 193 (264)
Q Consensus 192 ~~ 193 (264)
+.
T Consensus 88 ~~ 89 (99)
T 2cpd_A 88 PV 89 (99)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 141
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.70 E-value=2.4e-17 Score=120.01 Aligned_cols=77 Identities=14% Similarity=0.154 Sum_probs=70.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
..++|||+|||+++|+++|+++|++||.|..+.++.++. .++|||||+|.+.++|.+|+ .||+..+.|++|+|..++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 457899999999999999999999999999888887655 47899999999999999999 799999999999999864
No 142
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.70 E-value=1.2e-16 Score=117.21 Aligned_cols=74 Identities=18% Similarity=0.354 Sum_probs=68.7
Q ss_pred CCCCCEEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeC
Q 024698 113 DSVRRTVYVSDIDQ-NITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 113 ~~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~ 190 (264)
....++|||+|||+ ++|+++|+++|++||.|..+++ ++|||||+|.+.++|.+|+ .|||..+.|+.|+|.++
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 33678999999998 9999999999999999999999 4799999999999999999 79999999999999997
Q ss_pred CC
Q 024698 191 KT 192 (264)
Q Consensus 191 ~~ 192 (264)
+.
T Consensus 93 ~~ 94 (97)
T 2xnq_A 93 SS 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 143
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.70 E-value=8.6e-17 Score=120.36 Aligned_cols=75 Identities=24% Similarity=0.449 Sum_probs=69.5
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeC
Q 024698 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 112 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~ 190 (264)
.+...++|||+|||+++|+++|+++|++||.|..|.+. +|||||+|.+.++|.+|+ .|||..+.|+.|+|.++
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 100 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYS 100 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 44467899999999999999999999999999999996 689999999999999999 79999999999999997
Q ss_pred CC
Q 024698 191 KT 192 (264)
Q Consensus 191 ~~ 192 (264)
+.
T Consensus 101 ~~ 102 (108)
T 2jvo_A 101 KL 102 (108)
T ss_dssp SC
T ss_pred cC
Confidence 64
No 144
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.70 E-value=1.8e-17 Score=122.15 Aligned_cols=78 Identities=24% Similarity=0.408 Sum_probs=70.1
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCC---CCCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEee
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDP---HSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLP 189 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~---~~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~ 189 (264)
....++|||+|||+++|+++|+++|++|| |..|+++.++ +.++|||||+|.+.++|.+|+.|||..+.|+.|+|.+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDV 94 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCeEEEEEe
Confidence 34678999999999999999999999999 9999999886 2478999999999999999999999999999999998
Q ss_pred CC
Q 024698 190 SK 191 (264)
Q Consensus 190 ~~ 191 (264)
++
T Consensus 95 a~ 96 (100)
T 2j76_E 95 AD 96 (100)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 145
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=5.5e-17 Score=120.65 Aligned_cols=75 Identities=17% Similarity=0.147 Sum_probs=67.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCC--ceeCCeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGG--TMLGYYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~--~~~~g~~i~V~~~~ 191 (264)
..++|||+|||+++|+++|+++|++||+|..|.++++ +|||||+|.+.++|.+|+ .|++ ..+.|++|+|.+++
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 5689999999999999999999999999999999764 689999999999999999 6765 45899999999986
Q ss_pred CC
Q 024698 192 TA 193 (264)
Q Consensus 192 ~~ 193 (264)
..
T Consensus 90 ~~ 91 (104)
T 1wex_A 90 SK 91 (104)
T ss_dssp SS
T ss_pred Cc
Confidence 43
No 146
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2e-16 Score=115.07 Aligned_cols=75 Identities=28% Similarity=0.383 Sum_probs=67.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeCCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~~~ 192 (264)
..++|||+|||+++|+++|+++|++||+|..| +.++.+.+ ||||+|.+.++|.+|++||+..+.|+.|+|.++..
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~-~afV~f~~~~~a~~ai~l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV-FAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC-EEEEEESSHHHHHHHHTCSCCEETTEECCCBCSCC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc-EEEEEECCHHHHHHHHhcCCeEECCEEEEEEECCc
Confidence 46789999999999999999999999999987 45554444 99999999999999999999999999999998653
No 147
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.1e-17 Score=122.44 Aligned_cols=77 Identities=30% Similarity=0.437 Sum_probs=72.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~~ 191 (264)
..++|||+|||+++|+++|+++|++||.|..|+|+.++. .++|||||+|.+.++|.+|+.||+..+.|+.|+|.+++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEEEEecC
Confidence 457899999999999999999999999999999998876 47899999999999999999999999999999999864
No 148
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.70 E-value=7.2e-17 Score=129.71 Aligned_cols=78 Identities=19% Similarity=0.236 Sum_probs=71.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
..++|||+|||+.+|+++|+++|++||+|..|.|+.++. .++|||||+|.+.++|.+|| .|||..|.|+.|.|.++.
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 150 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCF 150 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 456799999999999999999999999999999998865 37899999999999999999 799999999999999975
Q ss_pred C
Q 024698 192 T 192 (264)
Q Consensus 192 ~ 192 (264)
.
T Consensus 151 ~ 151 (165)
T 1rk8_A 151 V 151 (165)
T ss_dssp E
T ss_pred C
Confidence 4
No 149
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.7e-16 Score=116.93 Aligned_cols=78 Identities=22% Similarity=0.303 Sum_probs=69.0
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeC
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~ 190 (264)
+...++|||+|||+++|+++|+++|++||.| +++.+.. .++|||||+|.+.++|.+|+ .||+..+.|+.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 3467899999999999999999999999987 4555533 57899999999999999999 69999999999999998
Q ss_pred CCC
Q 024698 191 KTA 193 (264)
Q Consensus 191 ~~~ 193 (264)
++.
T Consensus 89 ~~~ 91 (101)
T 2fc9_A 89 GPR 91 (101)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
No 150
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=120.18 Aligned_cols=75 Identities=17% Similarity=0.134 Sum_probs=70.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeCC
Q 024698 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 116 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~~ 191 (264)
..+|||+|||+++|+++|+++|++| .|..|+|+.|+. .++|||||+|.+.++|.+|+.+|+..+.||.|.|..+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999 899999998876 57899999999999999999999999999999998753
No 151
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.8e-17 Score=115.89 Aligned_cols=73 Identities=25% Similarity=0.403 Sum_probs=67.8
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeC
Q 024698 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 117 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~ 190 (264)
++|||+|||+++|+++|+++|++||+|..++++.++. .++|||||+|.+.++|.+|+ .++ ..+.|++|+|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 4699999999999999999999999999999998875 47899999999999999999 677 9999999999874
No 152
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.69 E-value=8.1e-18 Score=121.38 Aligned_cols=76 Identities=28% Similarity=0.425 Sum_probs=69.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCCC
Q 024698 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTA 193 (264)
Q Consensus 117 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~~ 193 (264)
++|||+|||+++|+++|+++|++||+|..+++..++. .++|||||+|.+.+ |.+|+ .|||..+.|+.|+|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 5799999999999999999999999999999998875 47899999999999 99999 79999999999999997643
No 153
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-16 Score=119.84 Aligned_cols=80 Identities=18% Similarity=0.362 Sum_probs=71.8
Q ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHH-HhCCcee--------C
Q 024698 112 EDSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAAL-NLGGTML--------G 181 (264)
Q Consensus 112 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al-~ln~~~~--------~ 181 (264)
.+...++|||+|||+++|+++|+++|++||+|..|+++.++. .++|||||+|.+.++|.+|+ .|||..+ .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 334678999999999999999999999999999999999874 47899999999999999999 7999999 5
Q ss_pred CeeEEEeeCC
Q 024698 182 YYPVRVLPSK 191 (264)
Q Consensus 182 g~~i~V~~~~ 191 (264)
+++|.|.++.
T Consensus 101 ~~~l~v~~a~ 110 (114)
T 1x5o_A 101 TEPLLCKFSG 110 (114)
T ss_dssp SSCBEEEECC
T ss_pred CCceeEEccC
Confidence 7778888865
No 154
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.3e-16 Score=119.03 Aligned_cols=80 Identities=20% Similarity=0.186 Sum_probs=72.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCC-eeEEEEe-cCCC--CCceEEEEEecCHHHHHHHH-HhC--CceeCCeeEEE
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQ-VVDCRVC-GDPH--SVLRFAFVEFADEHGARAAL-NLG--GTMLGYYPVRV 187 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~v~i~-~d~~--~~~g~afV~f~~~e~a~~Al-~ln--~~~~~g~~i~V 187 (264)
..++|||+|||+++|+++|+++|++||. |..+.++ .++. .++|||||+|.+.++|.+|+ .|| +..+.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 5678999999999999999999999998 9999998 6665 47899999999999999999 786 58999999999
Q ss_pred eeCCCCC
Q 024698 188 LPSKTAI 194 (264)
Q Consensus 188 ~~~~~~~ 194 (264)
.++++..
T Consensus 87 ~~a~~~~ 93 (109)
T 2dis_A 87 DWAEPEI 93 (109)
T ss_dssp EESCSSC
T ss_pred EEcCCCC
Confidence 9986543
No 155
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=124.44 Aligned_cols=78 Identities=27% Similarity=0.385 Sum_probs=71.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEee
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLP 189 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~ 189 (264)
....++|||+|||+.+|+++|+++|++||+|..++++.++. .++|||||+|.+.++|.+|+ .||+..+.|+.|+|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 33578999999999999999999999999999999998865 47899999999999999999 7999999999999986
Q ss_pred C
Q 024698 190 S 190 (264)
Q Consensus 190 ~ 190 (264)
+
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 3
No 156
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.69 E-value=1.4e-17 Score=115.93 Aligned_cols=73 Identities=16% Similarity=0.325 Sum_probs=67.9
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeC
Q 024698 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 118 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~ 190 (264)
+|||+|||+++|+++|+++|++||+|..+.++.++. .++|||||+|.+.++|.+|+++++..+.|+.|+|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 589999999999999999999999999999998865 4789999999999999999977999999999999863
No 157
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=7.9e-17 Score=124.07 Aligned_cols=77 Identities=25% Similarity=0.323 Sum_probs=69.3
Q ss_pred CCCEEEEcCCCCCCCHHHHH----HHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEee
Q 024698 115 VRRTVYVSDIDQNITEERLA----GLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLP 189 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~ 189 (264)
..++|||+|||+.+++++|+ ++|++||+|.+|.+..+ ..++|||||+|.+.++|.+|+ .|||..+.|++|+|.+
T Consensus 28 p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~-~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS-DDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC-CSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC-CCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 56889999999999999876 69999999999988643 347899999999999999999 8999999999999999
Q ss_pred CCC
Q 024698 190 SKT 192 (264)
Q Consensus 190 ~~~ 192 (264)
++.
T Consensus 107 a~~ 109 (127)
T 2a3j_A 107 SET 109 (127)
T ss_dssp CCC
T ss_pred ccC
Confidence 753
No 158
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.69 E-value=7.6e-17 Score=123.59 Aligned_cols=79 Identities=22% Similarity=0.298 Sum_probs=73.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
..++|||+|||+++|+++|+++|++||.|..|.|+.++. .++|||||+|.+.++|.+|+ .||+..+.|+.|.|.++.
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 100 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCF 100 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEec
Confidence 467899999999999999999999999999999998864 47899999999999999999 799999999999999985
Q ss_pred CC
Q 024698 192 TA 193 (264)
Q Consensus 192 ~~ 193 (264)
..
T Consensus 101 ~~ 102 (126)
T 3ex7_B 101 VR 102 (126)
T ss_dssp ES
T ss_pred CC
Confidence 43
No 159
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.68 E-value=3.2e-17 Score=126.83 Aligned_cols=80 Identities=18% Similarity=0.248 Sum_probs=72.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeE--EEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCc----eeCCe
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVD--CRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGT----MLGYY 183 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~----~~~g~ 183 (264)
....++|||+|||+++|+++|+++|++||.|.. |+|++|+. .++|||||+|.+. +|.+|+ .||+. .+.|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 346789999999999999999999999999977 99999985 4889999999999 999999 89999 99999
Q ss_pred eEEEeeCCCC
Q 024698 184 PVRVLPSKTA 193 (264)
Q Consensus 184 ~i~V~~~~~~ 193 (264)
.|+|.++++.
T Consensus 99 ~l~V~~a~~~ 108 (131)
T 2m2b_A 99 TINVEFAKGS 108 (131)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEECCCC
Confidence 9999998653
No 160
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.68 E-value=3.1e-16 Score=116.03 Aligned_cols=74 Identities=23% Similarity=0.404 Sum_probs=68.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTA 193 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~~ 193 (264)
..++|||+|||+++|+++|+++|++||.|..|+++ +|||||+|.+.++|.+|+ .||+..+.|+.|+|.++++.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 56889999999999999999999999999999984 569999999999999999 69999999999999998654
Q ss_pred C
Q 024698 194 I 194 (264)
Q Consensus 194 ~ 194 (264)
.
T Consensus 84 ~ 84 (103)
T 2dgu_A 84 D 84 (103)
T ss_dssp C
T ss_pred c
Confidence 3
No 161
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=6.6e-17 Score=121.55 Aligned_cols=76 Identities=16% Similarity=0.159 Sum_probs=69.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTA 193 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~~ 193 (264)
..++|||+|||+++|+++|+++|++||.|..|.++. ++|||||+|.+.++|.+|+ .|||..+.|++|+|.|++..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 357899999999999999999999999999999864 5689999999999999999 79999999999999998654
Q ss_pred C
Q 024698 194 I 194 (264)
Q Consensus 194 ~ 194 (264)
.
T Consensus 85 ~ 85 (111)
T 1whx_A 85 V 85 (111)
T ss_dssp T
T ss_pred c
Confidence 3
No 162
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=6.9e-17 Score=118.10 Aligned_cols=74 Identities=18% Similarity=0.331 Sum_probs=68.2
Q ss_pred CCCCEEEEcCCCC-CCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 114 SVRRTVYVSDIDQ-NITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 114 ~~~~~lfV~nLp~-~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
...++|||+|||+ .+|+++|+++|++||+|..|++ ++|||||+|.+.++|.+|+ .||+..+.|+.|+|.+++
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI------KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE------ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 3578899999998 9999999999999999999999 3789999999999999999 799999999999999986
Q ss_pred CC
Q 024698 192 TA 193 (264)
Q Consensus 192 ~~ 193 (264)
..
T Consensus 82 ~~ 83 (96)
T 2kvi_A 82 SN 83 (96)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 163
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.67 E-value=4.3e-17 Score=121.70 Aligned_cols=79 Identities=16% Similarity=0.111 Sum_probs=72.6
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCC---eeEEEEecCCC-CCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEe
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQ---VVDCRVCGDPH-SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVL 188 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~---i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~ 188 (264)
.....+|||+|||+++|+++|+++|++||. |..|+|+.|+. .++|||||+|.+.++|.+|+++|+..+.||.|+|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 87 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHTTTTCCSSSSCCCCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCcceeCCeEEEEE
Confidence 345788999999999999999999999998 89999998876 58899999999999999999999999999999999
Q ss_pred eCC
Q 024698 189 PSK 191 (264)
Q Consensus 189 ~~~ 191 (264)
++.
T Consensus 88 ~a~ 90 (107)
T 2lmi_A 88 EIN 90 (107)
T ss_dssp ECC
T ss_pred ECC
Confidence 864
No 164
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.67 E-value=9.2e-17 Score=117.35 Aligned_cols=78 Identities=28% Similarity=0.450 Sum_probs=70.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHH----HHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEe
Q 024698 114 SVRRTVYVSDIDQNITEERLA----GLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVL 188 (264)
Q Consensus 114 ~~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~ 188 (264)
...++|||+|||+++|+++|+ ++|++||.|..|.+..+ ..++|||||+|.+.++|.+|+ .|||..+.|+.|+|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRS-LKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHH-HHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcC-CCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 357899999999999999999 99999999999998642 236799999999999999999 799999999999999
Q ss_pred eCCC
Q 024698 189 PSKT 192 (264)
Q Consensus 189 ~~~~ 192 (264)
++++
T Consensus 85 ~a~~ 88 (97)
T 1nu4_A 85 YAKT 88 (97)
T ss_dssp ECSS
T ss_pred EccC
Confidence 9764
No 165
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.67 E-value=3e-16 Score=117.53 Aligned_cols=73 Identities=23% Similarity=0.497 Sum_probs=68.4
Q ss_pred CCCEEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCC
Q 024698 115 VRRTVYVSDIDQN-ITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 115 ~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~ 192 (264)
..++|||+|||++ +|+++|+++|++||+|..|.+ ++|||||+|.+.++|.+|+ .||+..+.|+.|+|.+++.
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 4589999999999 999999999999999999999 5789999999999999999 8999999999999999864
Q ss_pred C
Q 024698 193 A 193 (264)
Q Consensus 193 ~ 193 (264)
+
T Consensus 100 ~ 100 (110)
T 1wf1_A 100 P 100 (110)
T ss_dssp C
T ss_pred C
Confidence 3
No 166
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.67 E-value=2.4e-16 Score=113.30 Aligned_cols=74 Identities=18% Similarity=0.156 Sum_probs=68.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTA 193 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~~ 193 (264)
..++|||+|||+++|+++|+++|++| +|..+++. .++|||||+|.+.++|.+|+ .|||..+.|++|+|.++...
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 46789999999999999999999999 99999884 47899999999999999999 79999999999999997543
No 167
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8e-17 Score=123.34 Aligned_cols=78 Identities=21% Similarity=0.223 Sum_probs=68.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeCC
Q 024698 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 114 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~~ 191 (264)
...++|||+|||+++|+++|+++|++||.|..+.++.+.. .++|||||+|.+.++|.+||+||+..+.|+.|+|.++.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCBEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECC
Confidence 3568899999999999999999999999998854444433 47899999999999999999999999999999999864
No 168
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=1.9e-16 Score=115.50 Aligned_cols=75 Identities=21% Similarity=0.290 Sum_probs=67.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~ 192 (264)
..++|||+|||+.+|+++|+++|++||.|..+ .....++|||||+|.+.++|.+|+ .|||..+.|+.|+|.++++
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 90 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGE 90 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCC
Confidence 56899999999999999999999999998776 333457899999999999999999 6999999999999999754
No 169
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.8e-16 Score=113.98 Aligned_cols=75 Identities=23% Similarity=0.285 Sum_probs=66.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCC-eeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCC-ceeCCeeEEEeeC
Q 024698 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQ-VVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGG-TMLGYYPVRVLPS 190 (264)
Q Consensus 114 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~-i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~-~~~~g~~i~V~~~ 190 (264)
...++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+ .||+ ..+.|+.|+|.++
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 35678999999999999999999999999 6666552 4789999999999999999 7999 9999999999998
Q ss_pred CCC
Q 024698 191 KTA 193 (264)
Q Consensus 191 ~~~ 193 (264)
++.
T Consensus 81 ~~~ 83 (93)
T 2cqh_A 81 VSK 83 (93)
T ss_dssp CCC
T ss_pred cCc
Confidence 643
No 170
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.1e-16 Score=116.95 Aligned_cols=77 Identities=21% Similarity=0.283 Sum_probs=68.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCe----eEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEee
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQV----VDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLP 189 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i----~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~ 189 (264)
..++|||+|||+++|+++|+++|++||.| ..+++. ...++|||||+|.+.++|.+|+ .||+..+.|+.|+|.+
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~--~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM--TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE--CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC--CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 56899999999999999999999999998 556554 3457899999999999999999 7999999999999999
Q ss_pred CCCC
Q 024698 190 SKTA 193 (264)
Q Consensus 190 ~~~~ 193 (264)
++..
T Consensus 102 a~~~ 105 (115)
T 2cpx_A 102 GKNK 105 (115)
T ss_dssp CCCC
T ss_pred ccCC
Confidence 8654
No 171
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.65 E-value=4.6e-16 Score=124.20 Aligned_cols=77 Identities=22% Similarity=0.201 Sum_probs=69.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCC--eeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGY--YPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g--~~i~V~~~~ 191 (264)
.-.+|||+||++.+|+++|+++|++||+|..|++..+. ++|||||+|.+.++|.+|+ .|||..+.| +.|+|.+++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~--~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN--NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS--SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 34569999999999999999999999999999987543 5789999999999999999 799999965 999999987
Q ss_pred CC
Q 024698 192 TA 193 (264)
Q Consensus 192 ~~ 193 (264)
..
T Consensus 123 ~~ 124 (164)
T 1sjr_A 123 LT 124 (164)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 172
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=4.1e-16 Score=113.71 Aligned_cols=76 Identities=25% Similarity=0.363 Sum_probs=68.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEE-EecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCR-VCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~-i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~ 192 (264)
..++|||+|||+++|+++|+++|++||+|..++ ++.++.+ |.|||+|.+.++|.+|+ .|||..+.|++|+|.++.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~--~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET--AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS--EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC--CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 467899999999999999999999999999994 8777654 44999999999999999 7999999999999999754
No 173
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.65 E-value=2e-16 Score=121.46 Aligned_cols=77 Identities=25% Similarity=0.292 Sum_probs=69.5
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCee--EEEEecCCC-CCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeC
Q 024698 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVV--DCRVCGDPH-SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 114 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~--~v~i~~d~~-~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~ 190 (264)
...++|||+|||+++|+++|+++|++| .|. .|+|+.|+. .++|||||+|.++++|.+|+++++..+.||.|+|.++
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V~~a 118 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGKHKERIGHRYIEVFKS 118 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEEEEC
Confidence 356789999999999999999999999 677 899998876 5889999999999999999977889999999999875
Q ss_pred C
Q 024698 191 K 191 (264)
Q Consensus 191 ~ 191 (264)
.
T Consensus 119 ~ 119 (126)
T 2hgm_A 119 S 119 (126)
T ss_dssp C
T ss_pred C
Confidence 3
No 174
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.6e-15 Score=109.74 Aligned_cols=75 Identities=25% Similarity=0.361 Sum_probs=67.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
....++|||+|| ++|+++|+++|++||+|..|.+. .++|||||+|.+.++|.+|+ .||+..+.|+.|+|.+++
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~ 85 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 85 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCS
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECC
Confidence 345689999996 89999999999999999999984 46789999999999999999 899999999999999976
Q ss_pred CC
Q 024698 192 TA 193 (264)
Q Consensus 192 ~~ 193 (264)
..
T Consensus 86 ~~ 87 (97)
T 1x5p_A 86 KQ 87 (97)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 175
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.2e-15 Score=112.40 Aligned_cols=78 Identities=26% Similarity=0.345 Sum_probs=68.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEee
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLP 189 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~ 189 (264)
....++|||+|||+++|+++|+++|++|+ .++++.++. .++|||||+|.+.++|.+|+ .||+..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 34678899999999999999999999884 566766654 47899999999999999999 7999999999999999
Q ss_pred CCCC
Q 024698 190 SKTA 193 (264)
Q Consensus 190 ~~~~ 193 (264)
+++.
T Consensus 89 a~~~ 92 (102)
T 2fc8_A 89 AKPK 92 (102)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 8643
No 176
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=2e-16 Score=121.10 Aligned_cols=76 Identities=22% Similarity=0.196 Sum_probs=69.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCe----eEEEEecCCC-CCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEee
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQV----VDCRVCGDPH-SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLP 189 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i----~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~ 189 (264)
...+|||+|||+++|+++|+++|++||.| ..|+|+.|+. .++|||||+|.+.++|.+|++.|+..+.||.|.|..
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~V~~ 101 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIELFR 101 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEECCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 46789999999999999999999999975 6899988864 478999999999999999996699999999999987
Q ss_pred C
Q 024698 190 S 190 (264)
Q Consensus 190 ~ 190 (264)
+
T Consensus 102 a 102 (123)
T 2dha_A 102 S 102 (123)
T ss_dssp E
T ss_pred C
Confidence 5
No 177
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.65 E-value=2.9e-16 Score=132.87 Aligned_cols=77 Identities=19% Similarity=0.248 Sum_probs=70.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCC--CeeEEEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEee
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCG--QVVDCRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLP 189 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G--~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~ 189 (264)
..++|||+|||+++|+++|+++|++|| +|..|+|+.|+. .++|||||+|.+.++|.+|| .||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 456899999999999999999999999 999999999975 47899999999999999999 7999999999999998
Q ss_pred CC
Q 024698 190 SK 191 (264)
Q Consensus 190 ~~ 191 (264)
++
T Consensus 147 a~ 148 (229)
T 3q2s_C 147 VN 148 (229)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 178
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.64 E-value=5.4e-16 Score=110.82 Aligned_cols=71 Identities=27% Similarity=0.479 Sum_probs=66.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcC----C-------CeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhCCceeCCe
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSC----G-------QVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYY 183 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~----G-------~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al~ln~~~~~g~ 183 (264)
..++|||+|||+++|+++|+++|++| | +|.++++..+ +|||||+|.+.++|.+|+.||+..+.|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~----kg~afV~f~~~~~a~~A~~l~g~~~~g~ 80 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAMAFDGIIFQGQ 80 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS----SSEEEEEESSHHHHHHHGGGTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC----CcEEEEEcCCHHHHHHHHhcCCCEECCe
Confidence 46889999999999999999999999 8 9999999655 6899999999999999999999999999
Q ss_pred eEEEee
Q 024698 184 PVRVLP 189 (264)
Q Consensus 184 ~i~V~~ 189 (264)
.|+|..
T Consensus 81 ~l~V~r 86 (87)
T 2hzc_A 81 SLKIRR 86 (87)
T ss_dssp ECEEEC
T ss_pred EEEEeC
Confidence 999985
No 179
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.64 E-value=7.4e-17 Score=121.99 Aligned_cols=97 Identities=13% Similarity=0.124 Sum_probs=58.3
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC----C
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ----G 98 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~----g 98 (264)
.+.++.||++++|+++|+++|++||+|.+|+|+++.. ++| |||||+|.+.+ +|.+|+..+++ |
T Consensus 6 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~--~~k-------g~afV~f~~~~----~A~~Ai~~l~~~~~~g 72 (115)
T 4f25_A 6 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSK-------GYGFVHFETQE----AAERAIEKMNGMLLND 72 (115)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEE-------EEEEEEESCHH----HHHHHHHHHTTCEETT
T ss_pred CEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC--CCC-------ceEEEEECCHH----HHHHHHHHcCCCEECC
Confidence 3589999999999999999999999999999999864 467 99999999999 88888888877 3
Q ss_pred Cc-CCCC---cch---hcccCCCCCCEEEEcCCCCCCCHHH
Q 024698 99 RK-RLSG---RAF---RAQREDSVRRTVYVSDIDQNITEER 132 (264)
Q Consensus 99 ~~-~~~~---~~~---~~~~~~~~~~~lfV~nLp~~~te~~ 132 (264)
+. ++.. +.. ..........+|||+|||+++|++.
T Consensus 73 ~~i~V~~a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 73 RKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp EECEEEESSCCCC----------------------------
T ss_pred EEEEEEECCCccccccccccccCCCCceEeCCCCCCccccc
Confidence 32 1110 000 0111122345699999999999874
No 180
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=7e-16 Score=115.94 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=67.7
Q ss_pred CCCCCEEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhC--CceeCCeeEEEe
Q 024698 113 DSVRRTVYVSDIDQN-ITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLG--GTMLGYYPVRVL 188 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln--~~~~~g~~i~V~ 188 (264)
....++|||+|||++ +|+++|+++|++||+|.+|+|++ ++|||||+|.+.++|.+|+ .|| +..+.||+|+|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 345789999999998 99999999999999999999974 4689999999999999999 665 566999999999
Q ss_pred eCCC
Q 024698 189 PSKT 192 (264)
Q Consensus 189 ~~~~ 192 (264)
+++.
T Consensus 98 ~a~~ 101 (112)
T 1x4f_A 98 LSEK 101 (112)
T ss_dssp EECS
T ss_pred ECcc
Confidence 9754
No 181
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.64 E-value=7.4e-16 Score=111.18 Aligned_cols=74 Identities=26% Similarity=0.375 Sum_probs=62.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeCC
Q 024698 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 114 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~~ 191 (264)
....+|||+|||+++|+++|+++|++||+|.+|+++.+ ++|||||+|.+.++|.++... ...+.|+.|.|.++.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~---srGfaFV~F~~~~~A~~~~~~-~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP---FRAFAFVTFADDKVAQSLCGE-DLIIKGISVHISNAE 82 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS---CCSEEEEEESCHHHHHHHTTC-EEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC---CCCEEEEEECCHHHHHHHcCC-CcccCCEEEEEEEcC
Confidence 35678999999999999999999999999999999875 789999999999999843221 334569999999865
No 182
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.64 E-value=2.9e-16 Score=115.90 Aligned_cols=76 Identities=18% Similarity=0.357 Sum_probs=70.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~~ 191 (264)
..++|||+|||+++|+++|+++|++||.|..|+++.++. .++|||||+|.+.++|.+|++ ++..+.|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEECC
Confidence 457899999999999999999999999999999999874 378999999999999999999 9999999999999864
No 183
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.64 E-value=9.3e-17 Score=118.32 Aligned_cols=77 Identities=17% Similarity=0.204 Sum_probs=69.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC--CCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeCCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH--SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~--~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~~~ 192 (264)
..++|||+|||+++|+++|+++|++||.|.. .++.+.. .++|||||+|.+.++|.+|++||+..+.|+.|+|.+++.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~ 94 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKG 94 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcCC
Confidence 5678999999999999999999999999877 5555543 478999999999999999999999999999999999753
No 184
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.63 E-value=1.5e-15 Score=116.93 Aligned_cols=75 Identities=24% Similarity=0.276 Sum_probs=68.1
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceE-EEEEecCHHHHHHHH-HhCCceeCC--eeEEEeeCCC
Q 024698 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRF-AFVEFADEHGARAAL-NLGGTMLGY--YPVRVLPSKT 192 (264)
Q Consensus 117 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~-afV~f~~~e~a~~Al-~ln~~~~~g--~~i~V~~~~~ 192 (264)
-.|||+||++.+|+++|+++|++||+|.+|++..+ ++|| |||+|.+.++|.+|+ .|||..+.| +.|+|.++++
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~---~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~ 105 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 105 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE---TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC---CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCC
Confidence 45899999999999999999999999999998764 3587 999999999999999 899999988 9999999875
Q ss_pred CC
Q 024698 193 AI 194 (264)
Q Consensus 193 ~~ 194 (264)
..
T Consensus 106 ~~ 107 (130)
T 3zzy_A 106 TS 107 (130)
T ss_dssp SS
T ss_pred Cc
Confidence 43
No 185
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.1e-16 Score=116.48 Aligned_cols=73 Identities=12% Similarity=0.253 Sum_probs=66.5
Q ss_pred CCCEEEE--cCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCcee-----CCeeEE
Q 024698 115 VRRTVYV--SDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTML-----GYYPVR 186 (264)
Q Consensus 115 ~~~~lfV--~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~-----~g~~i~ 186 (264)
..++||| +||++++|+++|+++|++||+|..|.++. .+|||||+|.+.++|.+|+ .|||..+ .|++|.
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~ 99 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 99 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEE
Confidence 5678999 77999999999999999999999998864 3689999999999999999 7999998 789999
Q ss_pred EeeCC
Q 024698 187 VLPSK 191 (264)
Q Consensus 187 V~~~~ 191 (264)
|.+++
T Consensus 100 v~~a~ 104 (114)
T 2cq2_A 100 LNFVE 104 (114)
T ss_dssp EEEES
T ss_pred EEecc
Confidence 99864
No 186
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.62 E-value=8e-16 Score=120.54 Aligned_cols=79 Identities=22% Similarity=0.288 Sum_probs=68.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEE--------EEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCee
Q 024698 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVDC--------RVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYP 184 (264)
Q Consensus 114 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v--------~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~ 184 (264)
...++|||+|||+++|+++|+++|++||.|..+ ++.. ...++|||||+|.+.++|.+|+ .|||..+.|+.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~-~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMK-EGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEE-ETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEecc-CCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 356889999999999999999999999998764 3332 2357899999999999999999 79999999999
Q ss_pred EEEeeCCCC
Q 024698 185 VRVLPSKTA 193 (264)
Q Consensus 185 i~V~~~~~~ 193 (264)
|+|.+++..
T Consensus 122 l~V~~a~~~ 130 (143)
T 3egn_A 122 MVVQFARSA 130 (143)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999998643
No 187
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.42 E-value=3e-17 Score=124.18 Aligned_cols=79 Identities=25% Similarity=0.351 Sum_probs=72.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeE--------EEEecCCC--CCceEEEEEecCHHHHHHHH-HhCCceeCC
Q 024698 114 SVRRTVYVSDIDQNITEERLAGLFSSCGQVVD--------CRVCGDPH--SVLRFAFVEFADEHGARAAL-NLGGTMLGY 182 (264)
Q Consensus 114 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~--------v~i~~d~~--~~~g~afV~f~~~e~a~~Al-~ln~~~~~g 182 (264)
...++|||+|||+++|+++|+++|++||.|.. |+++.++. .++|||||+|.+.++|.+|+ .||+..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 35688999999999999999999999999998 88888865 47899999999999999999 699999999
Q ss_pred eeEEEeeCCC
Q 024698 183 YPVRVLPSKT 192 (264)
Q Consensus 183 ~~i~V~~~~~ 192 (264)
+.|+|.+++.
T Consensus 85 ~~l~V~~a~~ 94 (116)
T 2lcw_A 85 NPIKVSFATR 94 (116)
Confidence 9999999754
No 188
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.62 E-value=1.1e-15 Score=115.58 Aligned_cols=73 Identities=22% Similarity=0.216 Sum_probs=65.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCee-----EEEe
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYP-----VRVL 188 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~-----i~V~ 188 (264)
...+|||+|||+++|+++|+++|++||+|..|.|+.+ |||||+|.+.++|.+|| .||+..+.|+. |+|.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 4577999999999999999999999999999999776 89999999999999999 79999999998 7777
Q ss_pred eCCC
Q 024698 189 PSKT 192 (264)
Q Consensus 189 ~~~~ 192 (264)
...+
T Consensus 90 ~~~~ 93 (115)
T 3beg_B 90 VDGP 93 (115)
T ss_dssp ECC-
T ss_pred cCCC
Confidence 6543
No 189
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=109.52 Aligned_cols=74 Identities=26% Similarity=0.363 Sum_probs=64.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeCCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~~~ 192 (264)
..++|||+|||+++|+++|+++|++||+|..|+++.+ ++|||||+|.+.++|++|+.. ...+.|+.|+|.++++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP---FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAEP 77 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS---CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC---CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecCC
Confidence 4689999999999999999999999999999999765 679999999999999876532 4556999999998754
No 190
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.61 E-value=1.4e-15 Score=123.77 Aligned_cols=79 Identities=22% Similarity=0.269 Sum_probs=73.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~ 192 (264)
..++|||+|||+.+|+++|+++|++||+|..|.|..++. .++|||||+|.+.++|.+|+ .||+..+.|+.|+|.++..
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 166 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 467899999999999999999999999999999998874 47899999999999999999 7999999999999999754
Q ss_pred C
Q 024698 193 A 193 (264)
Q Consensus 193 ~ 193 (264)
.
T Consensus 167 ~ 167 (177)
T 2f3j_A 167 Q 167 (177)
T ss_dssp G
T ss_pred C
Confidence 3
No 191
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.60 E-value=4.5e-15 Score=122.33 Aligned_cols=77 Identities=18% Similarity=0.251 Sum_probs=70.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEeeCCC
Q 024698 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLPSKT 192 (264)
Q Consensus 116 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~~~~ 192 (264)
.++|||+|||+++|+++|+++|++||+|..|+++++.. .++|||||+|.+.++|.+|+.+.+..+.|++|.|.+.+.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 57899999999999999999999999999999998775 478999999999999999996556799999999998653
No 192
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=4.9e-15 Score=111.67 Aligned_cols=72 Identities=18% Similarity=0.229 Sum_probs=60.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCC-----CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEe
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPH-----SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVL 188 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~-----~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~ 188 (264)
..++|||+|||+++|+++|+++|++||+|. +.++.+.. .++|||||+|.+.++|.+|+ .|+ .++|+.+.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 568899999999999999999999999999 88877654 46899999999999999999 673 2556655555
Q ss_pred e
Q 024698 189 P 189 (264)
Q Consensus 189 ~ 189 (264)
.
T Consensus 84 ~ 84 (114)
T 2dnl_A 84 S 84 (114)
T ss_dssp C
T ss_pred c
Confidence 3
No 193
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.59 E-value=5e-15 Score=113.29 Aligned_cols=72 Identities=18% Similarity=0.164 Sum_probs=65.1
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceE-EEEEecCHHHHHHHH-HhCCceeCC--eeEEEeeCCCC
Q 024698 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRF-AFVEFADEHGARAAL-NLGGTMLGY--YPVRVLPSKTA 193 (264)
Q Consensus 118 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~-afV~f~~~e~a~~Al-~ln~~~~~g--~~i~V~~~~~~ 193 (264)
.|||+|||+.+|+++|+++|++||+|..|+|... .|| |||+|.+.++|.+|+ .|||..+.| +.|+|.++++.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence 3789999999999999999999999999999653 386 999999999999999 799999987 69999998754
No 194
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.58 E-value=5.2e-15 Score=112.64 Aligned_cols=76 Identities=20% Similarity=0.330 Sum_probs=66.9
Q ss_pred CEEEEcCC----CCCCCHHHHHHHhhcCCCeeEEEEecCCCC--CceEEEEEecC----HHH----HHHHHH---hCCce
Q 024698 117 RTVYVSDI----DQNITEERLAGLFSSCGQVVDCRVCGDPHS--VLRFAFVEFAD----EHG----ARAALN---LGGTM 179 (264)
Q Consensus 117 ~~lfV~nL----p~~~te~~L~~~F~~~G~i~~v~i~~d~~~--~~g~afV~f~~----~e~----a~~Al~---ln~~~ 179 (264)
..|||+|| |+.+++++|+++|++||+|.++.++.|+.+ ++|||||+|.+ +++ |.+|+. +||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 67999999 999999999999999999999999999985 88999999996 433 788873 79999
Q ss_pred eCCeeEEEeeCCC
Q 024698 180 LGYYPVRVLPSKT 192 (264)
Q Consensus 180 ~~g~~i~V~~~~~ 192 (264)
+.|++|+|..-+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999997543
No 195
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.57 E-value=8.6e-15 Score=111.69 Aligned_cols=74 Identities=26% Similarity=0.367 Sum_probs=67.5
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCC
Q 024698 113 DSVRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSK 191 (264)
Q Consensus 113 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~ 191 (264)
+...++|||+|| ++|+++|+++|++||+|..|.+. .++|||||+|.+.++|.+|+ .|||..+.|+.|+|.+++
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~ 109 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIAR 109 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeC
Confidence 346789999996 69999999999999999999985 46789999999999999999 899999999999999976
Q ss_pred C
Q 024698 192 T 192 (264)
Q Consensus 192 ~ 192 (264)
.
T Consensus 110 ~ 110 (121)
T 2bz2_A 110 K 110 (121)
T ss_dssp S
T ss_pred C
Confidence 4
No 196
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=7.8e-15 Score=105.70 Aligned_cols=70 Identities=20% Similarity=0.220 Sum_probs=62.3
Q ss_pred CCE-EEEcCCCCCCCHHH----HHHHhhcC-CCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEe
Q 024698 116 RRT-VYVSDIDQNITEER----LAGLFSSC-GQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVL 188 (264)
Q Consensus 116 ~~~-lfV~nLp~~~te~~----L~~~F~~~-G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~ 188 (264)
+.| |||+|||+++++++ |+++|++| |+|.+|. .|+|||.|.+.++|.+|+ +|||..+.||+|+|.
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt--------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT--------GCSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC--------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe--------cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 445 99999999999988 55899999 5999981 299999999999999999 899999999999999
Q ss_pred eCCCC
Q 024698 189 PSKTA 193 (264)
Q Consensus 189 ~~~~~ 193 (264)
+++..
T Consensus 80 ~A~~~ 84 (96)
T 2diu_A 80 FTPKN 84 (96)
T ss_dssp SSCCS
T ss_pred ecCCC
Confidence 87644
No 197
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.56 E-value=2.2e-14 Score=106.68 Aligned_cols=78 Identities=19% Similarity=0.203 Sum_probs=69.0
Q ss_pred CCCCEEEEcCCCC-----CCCHHHHHHHhhcCCCeeEEEEecCCC---CCceEEEEEecCHHHHHHHH-HhCCceeCCee
Q 024698 114 SVRRTVYVSDIDQ-----NITEERLAGLFSSCGQVVDCRVCGDPH---SVLRFAFVEFADEHGARAAL-NLGGTMLGYYP 184 (264)
Q Consensus 114 ~~~~~lfV~nLp~-----~~te~~L~~~F~~~G~i~~v~i~~d~~---~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~ 184 (264)
..+++|+|.||.. +-++++|+++|++||+|.+|.|+.++. .++|||||+|.+.++|.+|+ .|||..+.||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3578999999973 247899999999999999999998863 47899999999999999999 89999999999
Q ss_pred EEEeeCC
Q 024698 185 VRVLPSK 191 (264)
Q Consensus 185 i~V~~~~ 191 (264)
|+|.++.
T Consensus 86 i~v~~a~ 92 (105)
T 2pe8_A 86 VKACFYN 92 (105)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 9999864
No 198
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.53 E-value=1.7e-14 Score=122.24 Aligned_cols=75 Identities=24% Similarity=0.274 Sum_probs=68.9
Q ss_pred CCCCEEEEcCCCCCC---------CHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCcee---
Q 024698 114 SVRRTVYVSDIDQNI---------TEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTML--- 180 (264)
Q Consensus 114 ~~~~~lfV~nLp~~~---------te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~--- 180 (264)
...++|||+|||..+ ++++|+++|++||+|.+|+|+. ++|||||+|.+.++|+.|+ .|+|..+
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~----~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE----SKNCGFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG----GGTEEEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC----CCCEEEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 357899999999998 7999999999999999999985 4689999999999999999 8999999
Q ss_pred ---------CCeeEEEeeCCC
Q 024698 181 ---------GYYPVRVLPSKT 192 (264)
Q Consensus 181 ---------~g~~i~V~~~~~ 192 (264)
.|+.|.|.|++.
T Consensus 208 ~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 208 SDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp TSTTGGGGGGSCCCEEEECC-
T ss_pred ccccccccCCCCEEEEEEccC
Confidence 899999999864
No 199
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.2e-13 Score=103.73 Aligned_cols=79 Identities=22% Similarity=0.191 Sum_probs=67.6
Q ss_pred CCCCCCEEEEcCCCCCCC-----------HHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCce
Q 024698 112 EDSVRRTVYVSDIDQNIT-----------EERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTM 179 (264)
Q Consensus 112 ~~~~~~~lfV~nLp~~~t-----------e~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~ 179 (264)
.+..+++|+|.||....+ +++|+++|++||+|..|.| .++. ++|||||+|.+.++|.+|+ .|||..
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~-~~G~afV~f~~~~~A~~Ai~~lng~~ 88 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRH-PDGVASVSFRDPEEADYCIQTLDGRW 88 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTC-TTCEEEEECSCHHHHHHHHHHSTTCE
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCC-CCEEEEEEECCHHHHHHHHHHcCCCE
Confidence 344678999999954332 6899999999999999966 5544 7899999999999999999 899999
Q ss_pred eCCeeEEEeeCCC
Q 024698 180 LGYYPVRVLPSKT 192 (264)
Q Consensus 180 ~~g~~i~V~~~~~ 192 (264)
+.|++|+|.++.+
T Consensus 89 ~~gr~l~v~~a~~ 101 (112)
T 2dit_A 89 FGGRQITAQAWDG 101 (112)
T ss_dssp ETTEECEEEECCS
T ss_pred ECCcEEEEEEeCC
Confidence 9999999999653
No 200
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.46 E-value=4.3e-14 Score=103.93 Aligned_cols=65 Identities=15% Similarity=0.134 Sum_probs=61.1
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
+.++.+.||+.++|+++|+++|++||+|.+|++++++.+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~k-------G~afV~f~~~~----~A~~Ai~~lng 83 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSL-------GYGFVNYVTAK----DAERAINTLNG 83 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEE-------EEEEEEESSHH----HHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCccc-------ccEEEEECCHH----HHHHHHHHhCC
Confidence 4578999999999999999999999999999999999998999 99999999999 88899888876
No 201
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.45 E-value=4.4e-14 Score=104.86 Aligned_cols=70 Identities=17% Similarity=0.363 Sum_probs=62.4
Q ss_pred EcCCCCCCCHHHHHHHh------------hcCCCeeEEEEecCCC-CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEE
Q 024698 121 VSDIDQNITEERLAGLF------------SSCGQVVDCRVCGDPH-SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVR 186 (264)
Q Consensus 121 V~nLp~~~te~~L~~~F------------~~~G~i~~v~i~~d~~-~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~ 186 (264)
+.|||+.+++++|+++| ++||+|.+|.|+++.. .++|||||+|.++++|.+|+ .|||..+.||+|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 56788888888888777 9999999999998775 47899999999999999999 7999999999999
Q ss_pred EeeC
Q 024698 187 VLPS 190 (264)
Q Consensus 187 V~~~ 190 (264)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9874
No 202
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.45 E-value=1.9e-13 Score=108.48 Aligned_cols=103 Identities=8% Similarity=-0.045 Sum_probs=70.7
Q ss_pred EEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCCCCCCCCCCCCCCChhhhcCCCCeEEEcCCCC
Q 024698 145 DCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDK 223 (264)
Q Consensus 145 ~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~nL~~ 223 (264)
++.|..+..+++|||||+|.+.++|++|+ .+++....+....+............ ..............+|||+|||+
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~v~nl~~ 80 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEG-SHHHHHHMDVEGMTSLKVDNLTY 80 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECC-CCCSSCCCCCCBCCEEEEESCCT
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccccc-ccccccccCCCCCCEEEEeCCCC
Confidence 56777787788999999999999999999 67654333333333221110000000 00000011123578999999999
Q ss_pred CCCHHHHHHHHhhcCCCceEEEEeecc
Q 024698 224 KVPQAEVKQFFEAACGGEVRTLPCMII 250 (264)
Q Consensus 224 ~~te~~L~~~F~~~~gG~I~~v~l~~d 250 (264)
++++++|+++|++| |.|.+++|+.|
T Consensus 81 ~~~~~~l~~~F~~~--G~v~~~~i~~~ 105 (158)
T 2kn4_A 81 RTSPDTLRRVFEKY--GRVGDVYIPRD 105 (158)
T ss_dssp TCCHHHHHHHHHHH--SCEEEEECCCC
T ss_pred CCCHHHHHHHHHhc--CCeEEEEEeec
Confidence 99999999999999 99999999988
No 203
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.44 E-value=7.5e-14 Score=101.87 Aligned_cols=65 Identities=8% Similarity=0.067 Sum_probs=59.9
Q ss_pred CCcccccccchhcHHHHHHHhhccCC--ccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccCC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNP--LAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQG 98 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~--i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~g 98 (264)
++...+||++++|+++|+++|++||. |.+|++++|+.++++| |||||+|.+.+ +|.+|+..+++.
T Consensus 10 ~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~sr-------G~aFV~f~~~~----~A~~Ai~~lng~ 76 (95)
T 2lkz_A 10 DTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNR-------GFAFVQLSSAM----DASQLLQILQSL 76 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCS-------SEEEEECSSSH----HHHHHHHHHHSS
T ss_pred CEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCc-------eEeEEEECCHH----HHHHHHHHhcCC
Confidence 57899999999999999999999994 7899999999999999 99999999999 888888888763
No 204
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.43 E-value=4.3e-13 Score=105.66 Aligned_cols=109 Identities=10% Similarity=0.016 Sum_probs=80.9
Q ss_pred EEecCCCCCceEEEEEecCHHHHHHHH-Hh-CCceeCCeeEEEeeCCCCCCCCC--CCCCCCChhhhcCCCCeEEEcCCC
Q 024698 147 RVCGDPHSVLRFAFVEFADEHGARAAL-NL-GGTMLGYYPVRVLPSKTAILPVN--PTFLPRSEDEREMCSRTVYCTNID 222 (264)
Q Consensus 147 ~i~~d~~~~~g~afV~f~~~e~a~~Al-~l-n~~~~~g~~i~V~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~v~nL~ 222 (264)
.+..+...-+|+++|+|.+.++|.+|+ .+ ||..+.| .+.+.++........ ...............++|||+|||
T Consensus 4 al~l~g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~ 82 (150)
T 2i2y_A 4 KLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLG 82 (150)
T ss_dssp EEEECCSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCC
T ss_pred EeeeccccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 444455567899999999999999999 89 9999999 999998653211000 000011111122367899999999
Q ss_pred CCCCHHHHHHHHhhcCCCceEEEEeeccccceeeEE
Q 024698 223 KKVPQAEVKQFFEAACGGEVRTLPCMIILFYFHLFI 258 (264)
Q Consensus 223 ~~~te~~L~~~F~~~~gG~I~~v~l~~d~~~~~~~~ 258 (264)
+++++++|+++|++| |+|.+|+|+.|..++.|+.
T Consensus 83 ~~~t~~~l~~~F~~~--G~i~~v~i~~~~~g~afV~ 116 (150)
T 2i2y_A 83 NNGNKTELERAFGYY--GPLRSVWVARNPPGFAFVE 116 (150)
T ss_dssp SCCSCHHHHHHHHHH--SCEEEEEECSSSCSEEEEE
T ss_pred CCCCHHHHHHHHHhh--CCEEEEEEeeCCCcEEEEE
Confidence 999999999999999 9999999999866655544
No 205
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.42 E-value=4.9e-13 Score=99.32 Aligned_cols=76 Identities=16% Similarity=0.143 Sum_probs=66.2
Q ss_pred CCCEEEEcCC--CCCCC--------HHHHHHHhhcCCCeeEEEEecCCC----CCceEEEEEecCHHHHHHHH-HhCCce
Q 024698 115 VRRTVYVSDI--DQNIT--------EERLAGLFSSCGQVVDCRVCGDPH----SVLRFAFVEFADEHGARAAL-NLGGTM 179 (264)
Q Consensus 115 ~~~~lfV~nL--p~~~t--------e~~L~~~F~~~G~i~~v~i~~d~~----~~~g~afV~f~~~e~a~~Al-~ln~~~ 179 (264)
.++.|.+.|+ |.... +++|++.|++||+|.+|.|++++. .++|||||+|.+.++|.+|+ .|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5678999998 33333 378999999999999999998864 36899999999999999999 899999
Q ss_pred eCCeeEEEeeC
Q 024698 180 LGYYPVRVLPS 190 (264)
Q Consensus 180 ~~g~~i~V~~~ 190 (264)
+.||.|+|.++
T Consensus 84 f~GR~i~v~~~ 94 (105)
T 3v4m_A 84 FANRVVVTKYC 94 (105)
T ss_dssp ETTEECEEEEE
T ss_pred eCCCEEEEEEe
Confidence 99999999975
No 206
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.40 E-value=1.2e-13 Score=99.83 Aligned_cols=64 Identities=8% Similarity=-0.061 Sum_probs=58.0
Q ss_pred CCcccccccchhcHHHHHHHhhccC-CccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLN-PLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G-~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
+....+||++++|+++|+++|++|| +|.+|++++++.++++| |||||+|.+.+ +|.+|+..+++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~r-------g~aFV~F~~~~----~A~~Ai~~~~~ 66 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSR-------GFAFVEFSHLQ----DATRWMEANQH 66 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCS-------SEEEEECSSHH----HHHHHHHTTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcC-------ceEEEEecCHH----HHHHHHHhcCC
Confidence 3567899999999999999999999 89999999999999999 99999999999 78888876644
No 207
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.39 E-value=2.7e-13 Score=101.57 Aligned_cols=64 Identities=11% Similarity=0.018 Sum_probs=60.8
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.+..+.||++++|+++|+++|++||+|.+|+|+++..++++| |||||+|.+.+ +|.+|+..+|+
T Consensus 7 ~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~r-------G~aFV~f~~~~----~A~~Ai~~lng 70 (110)
T 3s8s_A 7 KEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHL-------GLARVLFTSTR----GAKETVKNLHL 70 (110)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEE-------EEEEEEESSHH----HHHHHHHHHTT
T ss_pred cEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCcee-------eEEEEEECCHH----HHHHHHHHhCC
Confidence 568999999999999999999999999999999999998999 99999999999 88899998887
No 208
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.36 E-value=9e-13 Score=99.11 Aligned_cols=65 Identities=15% Similarity=0.130 Sum_probs=60.5
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.....+.||+.++|+++|+++|++||+|.+|+++++..+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~-------g~afV~f~~~~----~a~~A~~~l~g 89 (115)
T 2cpz_A 25 GANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSK-------CFGFVSYDNPV----SAQAAIQSMNG 89 (115)
T ss_dssp TCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEE-------EEEEEECSSHH----HHHHHHHHHTT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcC-------ccEEEEECCHH----HHHHHHHHcCC
Confidence 3478999999999999999999999999999999999888999 99999999999 88888888876
No 209
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.35 E-value=3.1e-13 Score=101.64 Aligned_cols=99 Identities=17% Similarity=0.178 Sum_probs=76.1
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccCC---
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQG--- 98 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~g--- 98 (264)
+....+.||++++|+++|+++|++||+|.+|.++++. +++ |||||+|.+.+ +|.+|+..+++-
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~---~~~-------g~afV~f~~~~----~A~~A~~~l~g~~~~ 73 (115)
T 3lqv_A 8 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP---ETR-------GTAYVVYEDIF----DAKNAVDHLSGFNVS 73 (115)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST---TTT-------TCEEEEESSHH----HHHHHHHHHTTCBSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC---CCC-------cEEEEEECCHH----HHHHHHHHcCCCEEC
Confidence 3568999999999999999999999999999999764 446 99999999999 888888888762
Q ss_pred CcCCCCcchhcccCCCCCCEEEEcCCCCCCCHHHHHHHhhcCCC
Q 024698 99 RKRLSGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFSSCGQ 142 (264)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~ 142 (264)
.+.+.......... . ++++...++++|+++|++||-
T Consensus 74 g~~l~v~~a~~~~~--~------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 74 NRYLVVLYYNANRA--F------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp SCBCEEEECCHHHH--T------TTSCHHHHHHHHHHHHHHHCC
T ss_pred CeEEEEEEecCChh--h------hhhhHhHhHHHHHHHHHHhCC
Confidence 11111111111010 0 578888999999999999984
No 210
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.35 E-value=2.2e-12 Score=97.73 Aligned_cols=76 Identities=14% Similarity=0.152 Sum_probs=66.2
Q ss_pred CCCEEEEcCCCC--C---CCHHHHHHHhhcCCCeeEEEEecCCC------CCceEEEEEecCHHHHHHHH-HhCCceeCC
Q 024698 115 VRRTVYVSDIDQ--N---ITEERLAGLFSSCGQVVDCRVCGDPH------SVLRFAFVEFADEHGARAAL-NLGGTMLGY 182 (264)
Q Consensus 115 ~~~~lfV~nLp~--~---~te~~L~~~F~~~G~i~~v~i~~d~~------~~~g~afV~f~~~e~a~~Al-~ln~~~~~g 182 (264)
.+++|++.|+-. + --+++|++.|++||+|.+|.|+.++. .++||+||+|.+.++|.+|+ .|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 578899999852 2 23689999999999999999998753 25699999999999999999 899999999
Q ss_pred eeEEEeeC
Q 024698 183 YPVRVLPS 190 (264)
Q Consensus 183 ~~i~V~~~ 190 (264)
|.|+|.++
T Consensus 99 R~i~v~~~ 106 (118)
T 3ue2_A 99 RKVVAEVY 106 (118)
T ss_dssp EECEEEEE
T ss_pred cEEEEEEc
Confidence 99999975
No 211
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.35 E-value=4.6e-13 Score=98.40 Aligned_cols=64 Identities=13% Similarity=0.124 Sum_probs=60.0
Q ss_pred CCcccccccc------hhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhcc
Q 024698 23 NNLETKKSES------EFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFN 96 (264)
Q Consensus 23 ~~~~~~~~~~------~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~ 96 (264)
+...+.||++ ++++++|+++|++||+|.+|+|++++.++++| |||||+|.+.+ +|.+|+..++
T Consensus 7 ~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~k-------G~afV~f~~~~----~A~~Ai~~ln 75 (100)
T 3ns6_A 7 QYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTK-------GFLFVECGSMN----DAKKIIKSFH 75 (100)
T ss_dssp GEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEEC-------SEEEEEESSHH----HHHHHHHHHT
T ss_pred cEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccc-------eEEEEEECCHH----HHHHHHHHhC
Confidence 4678999999 99999999999999999999999999988999 99999999999 8888988888
Q ss_pred C
Q 024698 97 Q 97 (264)
Q Consensus 97 ~ 97 (264)
+
T Consensus 76 g 76 (100)
T 3ns6_A 76 G 76 (100)
T ss_dssp T
T ss_pred C
Confidence 6
No 212
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.3e-12 Score=94.47 Aligned_cols=66 Identities=11% Similarity=0.016 Sum_probs=61.1
Q ss_pred CCCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 21 ~~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
........||+.++|+++|+++|++||+|.+|+++.++.+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~-------g~afV~f~~~~----~A~~A~~~l~g 80 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSK-------GVAFILFLDKD----SAQNCTRAINN 80 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCT-------TCEEEEESCHH----HHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcc-------cEEEEEECCHH----HHHHHHHHcCC
Confidence 34578999999999999999999999999999999999988889 99999999999 88899988876
No 213
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.34 E-value=1.4e-12 Score=98.41 Aligned_cols=63 Identities=14% Similarity=0.029 Sum_probs=59.3
Q ss_pred CcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
...+.||+.++|+++|+++|++||+|.+|++++++.+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 42 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~-------g~afV~f~~~~----~A~~A~~~l~g 104 (118)
T 2khc_A 42 NLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSK-------CFGFVSFDNPD----SAQVAIKAMNG 104 (118)
T ss_dssp EEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCC-------CEEEEEEESSH----HHHHHHHHCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcC-------cEEEEEECCHH----HHHHHHHHcCC
Confidence 56899999999999999999999999999999998888999 99999999999 88899998876
No 214
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.33 E-value=7.8e-13 Score=95.14 Aligned_cols=63 Identities=13% Similarity=0.019 Sum_probs=57.2
Q ss_pred CcccccccchhcHHHHHHHhhccC--CccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 24 NLETKKSESEFTVQKLVDMFTKLN--PLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~~G--~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
+....||++++|+++|+++|++|| +|.+++++.++.+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 3 ~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~k-------G~afV~f~~~~----~a~~Ai~~l~g 67 (90)
T 3p5t_L 3 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSK-------GFALVGVGSEA----SSKKLMDLLPK 67 (90)
T ss_dssp -CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEE-------EEEEECC-CHH----HHHHHHHHGGG
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccC-------cEEEEEECCHH----HHHHHHHHcCC
Confidence 467889999999999999999999 99999999999998999 99999999999 88888888876
No 215
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.33 E-value=7e-13 Score=97.31 Aligned_cols=57 Identities=11% Similarity=0.082 Sum_probs=50.6
Q ss_pred cccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 25 LETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 25 ~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
....||+.++|+++|+++|++||+|.+|.++.+ ++ |||||+|.+.+ +|.+|+..+++
T Consensus 3 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~-------g~afV~f~~~~----~a~~A~~~l~g 59 (101)
T 2hvz_A 3 VYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PP-------GFAFVEFEDPR----DAEDAVRGLDG 59 (101)
T ss_dssp EEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SS-------SEEEEECSSHH----HHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CC-------CEEEEEECCHH----HHHHHHHHHCC
Confidence 567899999999999999999999999999987 45 99999999999 77777776665
No 216
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.31 E-value=2.1e-12 Score=99.38 Aligned_cols=64 Identities=16% Similarity=0.091 Sum_probs=60.0
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
....+.||+.++|+++|+++|++||+|.+|++++++.+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 47 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~-------G~afV~F~~~~----~A~~Ai~~lng 110 (129)
T 2kxn_B 47 CCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSR-------GFAFVYFENVD----DAKEAKERANG 110 (129)
T ss_dssp SCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCC-------CEEEEEESCHH----HHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccc-------eEEEEEECCHH----HHHHHHHHhCC
Confidence 478999999999999999999999999999999999888999 99999999999 88888888876
No 217
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.31 E-value=2.2e-12 Score=91.91 Aligned_cols=81 Identities=11% Similarity=0.099 Sum_probs=65.0
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccCCCcCC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQGRKRL 102 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~g~~~~ 102 (264)
..+.+.||++.+|+++|+++|++||+|.++++.. +| |||||+|.+.+ +|.+|++.+|+-+-
T Consensus 8 ~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~k-------GfaFVey~~~~----eA~~Ai~~Ln~~~l-- 68 (89)
T 2wbr_A 8 SWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQ-------GIALCKYTTRE----EANKAQMALNNCVL-- 68 (89)
T ss_dssp CEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TT-------TEEEEEESSHH----HHHHHHHHHTTEEE--
T ss_pred ceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CC-------cEEEEEECCHH----HHHHHHHHhcCCEE--
Confidence 3678999999999999999999999999999865 45 99999999999 88899999886211
Q ss_pred CCcchhcccCCCCCCEEEEcCCCCCCCHHHHHHHhh
Q 024698 103 SGRAFRAQREDSVRRTVYVSDIDQNITEERLAGLFS 138 (264)
Q Consensus 103 ~~~~~~~~~~~~~~~~lfV~nLp~~~te~~L~~~F~ 138 (264)
..++|.|. ..+|+++..+|+
T Consensus 69 ------------~gr~I~V~----~A~e~~~~~~~~ 88 (89)
T 2wbr_A 69 ------------ANTTIFAE----SPSENEVQSIMQ 88 (89)
T ss_dssp ------------TTEEEEEE----CCCHHHHHHHHC
T ss_pred ------------CCcEEEEE----ECCHHHHHHHhh
Confidence 23445554 227777777765
No 218
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=2.2e-12 Score=94.22 Aligned_cols=66 Identities=6% Similarity=-0.061 Sum_probs=61.3
Q ss_pred CCCCcccccccchhcHHHHHHHhhccCCcc-EEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLA-KEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 21 ~~~~~~~~~~~~~~t~~~L~~~F~~~G~i~-~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
......+.||+.++|+++|+++|++||+|. +|++++++.+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~-------g~afV~f~~~~----~a~~A~~~l~g 74 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPA-------GYCFVEFADLA----TAEKCLHKING 74 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEE-------EEEEEECSCHH----HHHHHHHTTTT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcC-------CEEEEEeCCHH----HHHHHHHHHcC
Confidence 345789999999999999999999999999 99999999888999 99999999999 88899988886
No 219
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.30 E-value=1.6e-12 Score=96.18 Aligned_cols=65 Identities=6% Similarity=-0.022 Sum_probs=60.0
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
..+..+.||+.++|+++|+++|++||+|.+|+++.++.+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 13 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~-------g~afV~f~~~~----~A~~A~~~l~g 77 (106)
T 2dgp_A 13 AIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHK-------GCAFLTYCERE----SALKAQSALHE 77 (106)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCC-------SEEEEEESSHH----HHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcc-------eEEEEEECCHH----HHHHHHHHhcC
Confidence 3578999999999999999999999999999999999988999 99999999999 78888887776
No 220
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=9.6e-12 Score=91.44 Aligned_cols=63 Identities=24% Similarity=0.254 Sum_probs=55.2
Q ss_pred CCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeCCCC
Q 024698 126 QNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPSKTA 193 (264)
Q Consensus 126 ~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~~~~ 193 (264)
..+|+++|+++|++||+|..|+|+. .++|||||+|.+.++|..|+ .+++ +.|++|+|.|++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~---~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS---KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQ 90 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES---SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc---CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCC
Confidence 5689999999999999999999973 47899999999999999999 5444 68999999997643
No 221
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.30 E-value=2.5e-12 Score=93.87 Aligned_cols=65 Identities=12% Similarity=0.128 Sum_probs=60.3
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.......||+.++|+++|+++|++||+|.+|+++.+..+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~-------g~afV~f~~~~----~a~~A~~~l~g 72 (99)
T 1whw_A 8 SGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPK-------GFAFVTFMFPE----HAVKAYAEVDG 72 (99)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCC-------SEEEEEESSHH----HHHHHHHHTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcC-------eEEEEEECCHH----HHHHHHHHhCC
Confidence 3468999999999999999999999999999999999888999 99999999999 88889888886
No 222
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=2.4e-12 Score=95.20 Aligned_cols=63 Identities=8% Similarity=-0.038 Sum_probs=57.5
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
..+..+.||++++|+++|+++|++||+|.+|+++++.. +++| |||||+|.+.+ +|.+|+. +++
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~r-------G~aFV~F~~~e----~a~~Ai~-~~~ 73 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFK-------GSIFVVFDSIE----SAKKFVE-TPG 73 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCC-------CEEEEEESSHH----HHHHHHT-SSC
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCc-------cEEEEEECCHH----HHHHHHH-cCC
Confidence 35789999999999999999999999999999999988 7899 99999999999 8888887 554
No 223
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.29 E-value=7.5e-12 Score=111.37 Aligned_cols=74 Identities=12% Similarity=0.227 Sum_probs=63.2
Q ss_pred CCCCCEEEEcC--CCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeC---Ce--e
Q 024698 113 DSVRRTVYVSD--IDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLG---YY--P 184 (264)
Q Consensus 113 ~~~~~~lfV~n--Lp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~---g~--~ 184 (264)
+...++|||+| |++.+|+++|+++|++||+|.+|.+.. +||||||+|.+.++|.+|+ .|||..+. |+ .
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 34678999999 578999999999999999999988754 5799999999999999999 89999983 44 5
Q ss_pred EEEeeC
Q 024698 185 VRVLPS 190 (264)
Q Consensus 185 i~V~~~ 190 (264)
|.|...
T Consensus 91 ly~~~~ 96 (345)
T 3tht_A 91 LYLNFV 96 (345)
T ss_dssp CEEEEC
T ss_pred EEEEEe
Confidence 666654
No 224
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=3.5e-12 Score=94.17 Aligned_cols=66 Identities=8% Similarity=0.094 Sum_probs=61.2
Q ss_pred CCCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 21 ~~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
......+.||+.++|+++|+++|++||+|.+|+++.+..+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~-------g~afV~f~~~~----~a~~A~~~l~g 79 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQ-------GYGFVEFLSEE----DADYAIKIMDM 79 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBC-------SCEEEEESSHH----HHHHHHHHSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCC-------cEEEEEECCHH----HHHHHHHHhCC
Confidence 34578999999999999999999999999999999999888999 99999999999 88899988886
No 225
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.29 E-value=2.2e-12 Score=91.42 Aligned_cols=66 Identities=17% Similarity=0.140 Sum_probs=60.6
Q ss_pred CCCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 21 ~~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.+......||+.++|+++|+++|++||+|.+|+++++..+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~-------g~afV~f~~~~----~a~~A~~~l~g 71 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHR-------GFAFVEFELAE----DAAAAIDNMNE 71 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEEC-------SEEEEEESSHH----HHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccc-------cEEEEEECCHH----HHHHHHHHhCC
Confidence 34578999999999999999999999999999999998888888 99999999999 88888888876
No 226
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=2.5e-12 Score=93.08 Aligned_cols=65 Identities=17% Similarity=0.109 Sum_probs=60.2
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
+......||+.++|+++|+++|++||+|.+|.+++++.+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 15 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~-------g~afV~f~~~~----~A~~A~~~l~g 79 (95)
T 2cqc_A 15 NCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSR-------GFAFVYFENVD----DAKEAKERANG 79 (95)
T ss_dssp GGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEE-------EEEEEEESSHH----HHHHHHHHHTT
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcc-------cEEEEEECCHH----HHHHHHHHhCC
Confidence 3478999999999999999999999999999999999988999 99999999999 88888888876
No 227
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=3.8e-12 Score=93.46 Aligned_cols=65 Identities=17% Similarity=0.142 Sum_probs=60.4
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.......||+.++|+++|+++|++||+|.+|+++.+..+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 12 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~-------g~afV~f~~~~----~A~~A~~~l~g 76 (102)
T 2cqb_A 12 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHR-------GFAFVEFELAE----DAAAAIDNMNE 76 (102)
T ss_dssp CSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCS-------SEEEECCSSHH----HHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcc-------eEEEEEECCHH----HHHHHHHHhCC
Confidence 4578999999999999999999999999999999998888889 99999999999 88888888876
No 228
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.28 E-value=1.6e-11 Score=92.34 Aligned_cols=75 Identities=13% Similarity=0.078 Sum_probs=63.5
Q ss_pred CCCCEEEEcCCCCCC----------CHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCC
Q 024698 114 SVRRTVYVSDIDQNI----------TEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGY 182 (264)
Q Consensus 114 ~~~~~lfV~nLp~~~----------te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g 182 (264)
..++.|.+.|+=..- -+++|++.|++||.|.+|.|.++. ++||+||+|.+.++|.+|+ .|||..+.|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS--AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC--TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC--CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 356778888875322 236789999999999999996653 6899999999999999999 899999999
Q ss_pred eeEEEeeC
Q 024698 183 YPVRVLPS 190 (264)
Q Consensus 183 ~~i~V~~~ 190 (264)
|.|+|.++
T Consensus 83 R~i~v~~~ 90 (114)
T 3s6e_A 83 KMITAAYV 90 (114)
T ss_dssp EECEEEEE
T ss_pred EEEEEEEE
Confidence 99999985
No 229
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.28 E-value=2e-12 Score=92.05 Aligned_cols=64 Identities=5% Similarity=0.006 Sum_probs=59.5
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
......||+.++|+++|+++|++||+|.+|+++++..+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 7 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~-------g~afV~f~~~~----~A~~A~~~l~g 70 (87)
T 3bs9_A 7 FHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSK-------GYGFVSFFNKW----DAENAIQQMGG 70 (87)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEE-------EEEEEEESSHH----HHHHHHHHHTT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccc-------eEEEEEECCHH----HHHHHHHHcCC
Confidence 467899999999999999999999999999999998888999 99999999999 88888888876
No 230
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=1.6e-12 Score=92.22 Aligned_cols=65 Identities=9% Similarity=0.015 Sum_probs=59.5
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
+......||+.++|+++|+++|++||+|.+|+++.++.+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 5 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~-------g~afV~f~~~~----~a~~A~~~l~g 69 (85)
T 1x4e_A 5 SSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCK-------GYGFVDFDSPS----AAQKAVTALKA 69 (85)
T ss_dssp CCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCC-------SEEEEEESCHH----HHHHHHHHHHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcC-------cEEEEEECCHH----HHHHHHHHhcC
Confidence 3568899999999999999999999999999999999888999 99999999999 77788887775
No 231
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=4.2e-12 Score=95.56 Aligned_cols=66 Identities=8% Similarity=-0.005 Sum_probs=61.0
Q ss_pred CCCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 21 ~~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
...+..+.||+.++|+++|+++|++||+|.+|++++++.+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~-------g~afV~f~~~~----~a~~Ai~~~~~ 81 (116)
T 2cqd_A 16 TFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSR-------GYGFVTMADRA----AAERACKDPNP 81 (116)
T ss_dssp SSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCC-------SEEEEEESSHH----HHHHHHTCSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccc-------eEEEEEECCHH----HHHHHHHhCCC
Confidence 34578999999999999999999999999999999999888999 99999999999 88899988875
No 232
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.28 E-value=3.2e-12 Score=94.38 Aligned_cols=64 Identities=6% Similarity=0.000 Sum_probs=58.9
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
+....+.||++++|+++|+++|++||+|.+|+++.+. +++++ |||||+|.+.+ +|.+|+..+++
T Consensus 15 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~-------g~afV~f~~~~----~A~~Ai~~l~g 78 (105)
T 2dnh_A 15 DRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSK-------GCAFVKFSSHT----EAQAAIHALHG 78 (105)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEE-------EEEEEEESSHH----HHHHHHHHHSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcC-------cEEEEEeCCHH----HHHHHHHHHcC
Confidence 4578999999999999999999999999999999998 56888 99999999999 88888888876
No 233
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=4.4e-12 Score=92.64 Aligned_cols=65 Identities=11% Similarity=0.062 Sum_probs=59.2
Q ss_pred CCCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 21 ~~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
........||+.++|+++|+++|++||+|.+|+++.++.+++++ |||||+|.+.+ +|.+|+. +++
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~-------g~afV~f~~~~----~a~~A~~-~~~ 73 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPR-------GFGFITFEDEQ----SVDQAVN-MHF 73 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCC-------SEEEEEESSHH----HHHHHHH-HCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCC-------ceEEEEECCHH----HHHHHHH-hCC
Confidence 34578999999999999999999999999999999999888899 99999999999 8888887 665
No 234
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.27 E-value=2.8e-12 Score=92.84 Aligned_cols=64 Identities=13% Similarity=0.053 Sum_probs=58.9
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.......||+.++|+++|+++|++||+|.+|+++++.. ++++ |||||+|.+.+ +|.+|+..+++
T Consensus 16 ~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~-------g~afV~f~~~~----~a~~A~~~l~g 79 (95)
T 2ywk_A 16 DRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPK-------SFGFVCFKHPE----SVSYAIALLNG 79 (95)
T ss_dssp GGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEE-------EEEEEEESSTH----HHHHHHHHHTT
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCc-------eEEEEEECCHH----HHHHHHHHhCC
Confidence 35789999999999999999999999999999999987 6888 99999999999 88888888876
No 235
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.27 E-value=3.8e-12 Score=88.11 Aligned_cols=61 Identities=8% Similarity=0.005 Sum_probs=55.0
Q ss_pred cccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 25 LETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 25 ~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
....||+.++|+++|+++|++||+|.+|++++++.+++++ |||||+|.+.+ +|.+|+. +++
T Consensus 2 l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~-------g~afV~f~~~~----~a~~a~~-~~~ 62 (75)
T 2mss_A 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHR-------GFGFVTFESED----IVEKVCE-IHF 62 (75)
T ss_dssp EEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSC-------BEEEEECSCHH----HHHHHHS-SSC
T ss_pred EEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcC-------cEEEEEECCHH----HHHHHHH-CCC
Confidence 4578999999999999999999999999999999888999 99999999999 7778776 554
No 236
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.27 E-value=6.1e-12 Score=93.08 Aligned_cols=67 Identities=7% Similarity=0.149 Sum_probs=60.5
Q ss_pred CCCCCcccccccchhcHHHHHHHhhccCCccEEEcccc-CCCCCccccccCCCceEEeccCCcccccchHHHHHhhc-cC
Q 024698 20 NKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSY-YHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNF-NQ 97 (264)
Q Consensus 20 ~~~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~-~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~-~~ 97 (264)
.......+.||+.++|+++|+++|++||+|.+|+++++ ..+++++ |||||+|.+.+ +|.+|+..+ ++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~-------g~afV~f~~~~----~a~~A~~~l~~~ 81 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHR-------GFGFVDFITKQ----DAKKAFNALCHS 81 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSC-------SEEEEEESSHH----HHHHHHHHHHTC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcC-------ceEEEEECCHH----HHHHHHHHhccC
Confidence 34468899999999999999999999999999999999 7777888 99999999999 888888888 54
No 237
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=4.2e-12 Score=93.23 Aligned_cols=65 Identities=11% Similarity=0.068 Sum_probs=60.3
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.....+.||+.++|+++|+++|++||+|.+|+++.+..+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 12 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~-------g~afV~f~~~~----~A~~A~~~l~g 76 (102)
T 1x5s_A 12 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSR-------GFGFVTFENID----DAKDAMMAMNG 76 (102)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCC-------SEEEEECSSHH----HHHHHHHHHTT
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcc-------cEEEEEECCHH----HHHHHHHHhCC
Confidence 3578999999999999999999999999999999999888888 99999999999 88888888876
No 238
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.27 E-value=6.2e-12 Score=93.68 Aligned_cols=65 Identities=5% Similarity=-0.065 Sum_probs=60.5
Q ss_pred CCCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhcc
Q 024698 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFN 96 (264)
Q Consensus 21 ~~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~ 96 (264)
......+.||+.++|+++|+++|++||+|.+|+++++..+++++ |||||+|.+.+ +|.+|+..++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~-------g~afV~f~~~~----~A~~A~~~~~ 78 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSK-------GCAFAQFMTQE----AAQKCLAAAS 78 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBC-------SEEEEEESSHH----HHHHHHHHHC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCc-------cEEEEEECCHH----HHHHHHHHhc
Confidence 34688999999999999999999999999999999999988889 99999999999 8888888887
No 239
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=6.1e-12 Score=92.56 Aligned_cols=65 Identities=12% Similarity=0.149 Sum_probs=60.7
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.....+.||+.++|+++|+++|++||+|.+|.++.+..+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~-------g~afV~f~~~~----~A~~A~~~l~g 77 (103)
T 2dnm_A 13 MITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPR-------GFAFVRFHDRR----DAQDAEAAMDG 77 (103)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBC-------SCEEEEESSSS----HHHHHHHHHSS
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCC-------eEEEEEECCHH----HHHHHHHHcCC
Confidence 3578999999999999999999999999999999999988999 99999999999 88888888876
No 240
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.27 E-value=5.2e-12 Score=96.79 Aligned_cols=62 Identities=11% Similarity=0.000 Sum_probs=55.3
Q ss_pred CCCCCcccccccchhcHHHHHHHhhccCCcc--EEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhh
Q 024698 20 NKNNNLETKKSESEFTVQKLVDMFTKLNPLA--KEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNN 94 (264)
Q Consensus 20 ~~~~~~~~~~~~~~~t~~~L~~~F~~~G~i~--~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~ 94 (264)
.......+.||++++|+++|+++|++| .|. +|+|++++. |+++ |||||+|.+.+ +|.+|+..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-Grsr-------GfaFV~F~~~e----~A~~Al~~ 103 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKIT-------GEAFVQFASQE----LAEKALGK 103 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSC-------SEEEEEESSTT----HHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCc-------eEEEEEECCHH----HHHHHHHH
Confidence 344578999999999999999999999 677 999999988 7999 99999999999 77788875
No 241
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.27 E-value=4.4e-12 Score=90.35 Aligned_cols=63 Identities=11% Similarity=0.029 Sum_probs=57.9
Q ss_pred CCCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhh
Q 024698 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNN 94 (264)
Q Consensus 21 ~~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~ 94 (264)
...+....||++++|+++|+++|++||+|.+|++++++.+++++ |||||+|.+.+ +|.+|+..
T Consensus 10 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~-------g~afV~f~~~~----~a~~A~~~ 72 (87)
T 3s7r_A 10 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSR-------GFGFILFKDAA----SVEKVLDQ 72 (87)
T ss_dssp CTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEE-------EEEEEEESSTH----HHHHHHHS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccc-------cEEEEEECCHH----HHHHHHHh
Confidence 44578999999999999999999999999999999999888999 99999999999 78788754
No 242
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.27 E-value=4.2e-12 Score=88.20 Aligned_cols=61 Identities=7% Similarity=-0.057 Sum_probs=56.1
Q ss_pred cccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhcc
Q 024698 25 LETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFN 96 (264)
Q Consensus 25 ~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~ 96 (264)
....||+.++|+++|+++|++||+|.++++++++.+++++ |||||+|.+.+ +|.+|+..++
T Consensus 3 l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~-------g~afV~f~~~~----~a~~a~~~~~ 63 (77)
T 1uaw_A 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSR-------GFGFVTFMDQA----GVDKVLAQSR 63 (77)
T ss_dssp EEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCS-------SEEEECCCCTT----HHHHHHHTTT
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcC-------ceEEEEEcCHH----HHHHHHHhCC
Confidence 5678999999999999999999999999999999888999 99999999999 7778887665
No 243
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.26 E-value=3.8e-12 Score=94.95 Aligned_cols=63 Identities=6% Similarity=-0.060 Sum_probs=57.8
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhc
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNF 95 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~ 95 (264)
..+....||+.++|+++|+++|++||+|.+|+++++..+++++ |||||+|.+.+ +|.+|+..+
T Consensus 25 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~k-------g~afV~f~~~~----~A~~Ai~~~ 87 (109)
T 2rs2_A 25 GCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSR-------GFGFVTFMDQA----GVDKVLAQS 87 (109)
T ss_dssp -CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCT-------TCEEEEESSHH----HHHHHHHSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcC-------cEEEEEECCHH----HHHHHHHHC
Confidence 4578999999999999999999999999999999999888999 99999999999 787888765
No 244
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.26 E-value=3.3e-12 Score=90.08 Aligned_cols=63 Identities=8% Similarity=0.032 Sum_probs=58.2
Q ss_pred CcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
+....||+.++|+++|+++|++||+|.+++++++..+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 3 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~-------g~afV~f~~~~----~a~~a~~~l~g 65 (83)
T 3md1_A 3 NLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSR-------GYGFVSFTSQD----DAQNAMDSMQG 65 (83)
T ss_dssp EEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEE-------EEEEEEESCHH----HHHHHHHHHTT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcc-------ceEEEEECCHH----HHHHHHHHhcC
Confidence 35678999999999999999999999999999998888999 99999999999 88888888876
No 245
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=7.7e-12 Score=92.32 Aligned_cols=65 Identities=8% Similarity=-0.039 Sum_probs=59.1
Q ss_pred CCCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 21 ~~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
......+.||+.++|+++|+++|++||+|.+|++++++.+++++ |||||+|.+.+ +|.+|+.. ++
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~-------g~afV~f~~~~----~a~~a~~~-~~ 79 (105)
T 2dh8_A 15 EIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSR-------GFGFVKFKDPN----CVGTVLAS-RP 79 (105)
T ss_dssp SSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEE-------EEEEEEESSTT----HHHHHHHH-CS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcc-------eEEEEEECCHH----HHHHHHHh-CC
Confidence 34578999999999999999999999999999999999888999 99999999999 77788876 54
No 246
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.26 E-value=4.9e-12 Score=91.92 Aligned_cols=63 Identities=10% Similarity=0.040 Sum_probs=58.7
Q ss_pred CcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.....||+.++|+++|+++|++||+|.+|+++.+..+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 4 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~-------g~afV~f~~~~----~A~~Ai~~l~g 66 (96)
T 2x1f_A 4 VVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSK-------GYAFIEFRDLE----SSASAVRNLNG 66 (96)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBC-------SEEEEEESSHH----HHHHHHHHHTT
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccc-------eEEEEEECCHH----HHHHHHHHhCC
Confidence 56788999999999999999999999999999999888899 99999999999 88888888876
No 247
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=6.3e-12 Score=91.96 Aligned_cols=64 Identities=6% Similarity=-0.019 Sum_probs=59.1
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.......||+.++|+++|+++|++||+|.+|+++.+. +++++ |||||+|.+.+ +|.+|+..+++
T Consensus 17 ~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~-------g~afV~f~~~~----~a~~A~~~l~g 80 (100)
T 2do4_A 17 KHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPK-------GLAYVEYENES----QASQAVMKMDG 80 (100)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEE-------EEEEEEESSHH----HHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEE-------eEEEEEECCHH----HHHHHHHHhCC
Confidence 4578999999999999999999999999999999998 67889 99999999999 88888888876
No 248
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=6.5e-12 Score=90.89 Aligned_cols=64 Identities=11% Similarity=0.066 Sum_probs=59.7
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
......||+.++|+++|+++|++||+|.+|+++++..+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 6 ~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~-------g~afV~f~~~~----~a~~A~~~l~g 69 (95)
T 2dnz_A 6 SGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSK-------GYGFITFSDSE----CARRALEQLNG 69 (95)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCC-------SEEEEEESCHH----HHHHHHHHHTT
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCcee-------eEEEEEECCHH----HHHHHHHHhCC
Confidence 467899999999999999999999999999999999888999 99999999999 88888888876
No 249
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.25 E-value=9.1e-12 Score=93.97 Aligned_cols=64 Identities=14% Similarity=0.148 Sum_probs=59.3
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
..+..+.||+.++|+++|+++|++||+|.+|.++.+. +++++ |||||+|.+.+ +|.+|+..+++
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~-------g~afV~F~~~~----~A~~Ai~~l~g 70 (116)
T 2fy1_A 7 PGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSR-------GFAFITFENPA----DAKNAAKDMNG 70 (116)
T ss_dssp CCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCC-------CEEEEECSSHH----HHHHHHHHCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcc-------cEEEEEECCHH----HHHHHHHHhCC
Confidence 3578999999999999999999999999999999998 77888 99999999999 88899988887
No 250
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=5.6e-12 Score=91.44 Aligned_cols=65 Identities=12% Similarity=0.051 Sum_probs=60.2
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEE-EccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKE-FFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i-~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
+......||+.++|+++|+++|++||+|.++ ++++++.+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~-------g~afV~f~~~~----~A~~A~~~l~g 70 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSK-------GYAFINFASFD----ASDAAIEAMNG 70 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCC-------SEEEEEBSSHH----HHHHHHHTTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcC-------eEEEEEECCHH----HHHHHHHHcCC
Confidence 3468899999999999999999999999999 999998888889 99999999999 88899988886
No 251
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.24 E-value=4e-12 Score=94.72 Aligned_cols=64 Identities=8% Similarity=0.004 Sum_probs=59.8
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
......||+.++|+++|+++|++||+|.+|++++++.+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 27 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~-------g~afV~F~~~~----~A~~Ai~~l~g 90 (108)
T 2jrs_A 27 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSK-------GYGFITFSDSE----CAKKALEQLNG 90 (108)
T ss_dssp EEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEE-------EEEEEEESCHH----HHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccc-------eEEEEEECCHH----HHHHHHHHcCC
Confidence 468999999999999999999999999999999998888999 99999999999 88888888876
No 252
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=4.7e-12 Score=93.77 Aligned_cols=61 Identities=8% Similarity=0.022 Sum_probs=54.3
Q ss_pred CCCCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 20 NKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 20 ~~~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
....++++.||++++|+++|+++|++||+|.+|+++++ | |||||+|.+.+ +|.+|+..+++
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------k-------GfaFVeF~~~~----~A~~Ai~~l~~ 74 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------K-------NQAFIEMNTEE----AANTMVNYYTS 74 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------T-------TEEEEEESSHH----HHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------C-------CEEEEEECCHH----HHHHHHHHhcc
Confidence 34467899999999999999999999999999999875 4 99999999999 88888887764
No 253
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.24 E-value=8.6e-12 Score=96.69 Aligned_cols=65 Identities=11% Similarity=0.132 Sum_probs=60.7
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
+.+..+.||+.++|+++|+++|++||+|.+|+++.+..+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 47 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~-------G~afV~F~~~~----~A~~Ai~~l~g 111 (135)
T 2lea_A 47 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESR-------GFAFVRFHDKR----DAEDAMDAMDG 111 (135)
T ss_dssp CCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCC-------SCCEEECSCHH----HHHHHHTTTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccc-------eEEEEEECCHH----HHHHHHHHcCC
Confidence 3478999999999999999999999999999999999888999 99999999999 88899988886
No 254
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.24 E-value=6.1e-12 Score=94.43 Aligned_cols=64 Identities=5% Similarity=0.011 Sum_probs=59.9
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
....+.||+.++|+++|+++|++||.|.+|+++++..+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~-------g~afV~f~~~~----~a~~A~~~l~g 79 (115)
T 2dgo_A 16 FHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSK-------GYGFVSFFNKW----DAENAIQQMGG 79 (115)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEE-------EEEEEEESSHH----HHHHHHHHTTT
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcc-------eEEEEEECCHH----HHHHHHHHhCC
Confidence 478999999999999999999999999999999998888999 99999999999 88889888876
No 255
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.24 E-value=4e-12 Score=90.82 Aligned_cols=63 Identities=10% Similarity=0.033 Sum_probs=58.6
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
......||+.++|+++|+++|++||+|.+++++++..+++++ |||||+|.+.+ +|.+|+ .+++
T Consensus 7 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~-------g~afV~f~~~~----~a~~a~-~~~g 69 (89)
T 3ucg_A 7 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPK-------GFAYIEFSDKE----SVRTSL-ALDE 69 (89)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCC-------EEEEEEESSTH----HHHHHG-GGTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcc-------eEEEEEECCHH----HHHHHH-hcCC
Confidence 467889999999999999999999999999999998888889 99999999999 888898 7776
No 256
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.23 E-value=9.7e-12 Score=96.33 Aligned_cols=65 Identities=17% Similarity=0.142 Sum_probs=60.3
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.....+.||+.++|+++|+++|++||+|.++++++++.+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 63 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~-------g~afV~f~~~~----~a~~A~~~l~g 127 (140)
T 2ku7_A 63 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHR-------GFAFVEFELAE----DAAAAIDNMNE 127 (140)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCC-------SEEEEEESCHH----HHHHHHHHSTE
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcC-------cEEEEEECCHH----HHHHHHHHhCC
Confidence 4578999999999999999999999999999999998888899 99999999999 88899888875
No 257
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=5e-12 Score=93.05 Aligned_cols=65 Identities=9% Similarity=0.146 Sum_probs=60.5
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.....+.||+.++|+++|+++|++||+|.+|+++.++.+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~-------g~afV~f~~~~----~A~~A~~~l~g 79 (103)
T 2cq0_A 15 NATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSK-------GFAFISFHRRE----DAARAIAGVSG 79 (103)
T ss_dssp SEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEE-------EEEEEEESSHH----HHHHHHHHTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCcee-------eEEEEEECCHH----HHHHHHHHcCC
Confidence 3478999999999999999999999999999999998888999 99999999999 88899988886
No 258
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=1e-11 Score=92.85 Aligned_cols=67 Identities=10% Similarity=0.072 Sum_probs=61.2
Q ss_pred CCCCCcccccccchhcHHHHHHHhhccCCcc--------EEEccccCCCCCccccccCCCceEEeccCCcccccchHHHH
Q 024698 20 NKNNNLETKKSESEFTVQKLVDMFTKLNPLA--------KEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRR 91 (264)
Q Consensus 20 ~~~~~~~~~~~~~~~t~~~L~~~F~~~G~i~--------~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a 91 (264)
..+....+.||++++|+++|+++|++||.|. .|+++.++.+++++ |||||+|.+.+ +|.+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~-------g~afV~f~~~~----~A~~A 81 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPK-------GDATVSYEDPP----TAKAA 81 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBC-------SEEEEEBSSHH----HHHHH
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCee-------eEEEEEECCHH----HHHHH
Confidence 3446889999999999999999999999999 69999998888999 99999999999 88888
Q ss_pred HhhccC
Q 024698 92 RNNFNQ 97 (264)
Q Consensus 92 ~~~~~~ 97 (264)
+..|++
T Consensus 82 i~~l~g 87 (113)
T 2cpe_A 82 VEWFDG 87 (113)
T ss_dssp HHHHTT
T ss_pred HHHcCC
Confidence 888876
No 259
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=6.6e-12 Score=92.81 Aligned_cols=64 Identities=9% Similarity=0.003 Sum_probs=59.8
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
......||+.++|+++|+++|++||+|.+|.++.+..+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 24 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~-------g~afV~f~~~~----~a~~A~~~l~g 87 (106)
T 1p27_B 24 WILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLK-------GYTLVEYETYK----EAQAAMEGLNG 87 (106)
T ss_dssp EEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEE-------EEEEEEESCHH----HHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCcee-------eEEEEEECCHH----HHHHHHHHhcC
Confidence 468999999999999999999999999999999999988999 99999999999 88888888876
No 260
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.23 E-value=9e-12 Score=91.03 Aligned_cols=65 Identities=11% Similarity=0.085 Sum_probs=60.2
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccE--------EEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHh
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAK--------EFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRN 93 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~--------i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~ 93 (264)
.....+.||+.++|+++|+++|++||.|.+ +++++++.+++++ |||||+|.+.+ +|.+|+.
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~-------G~afV~f~~~~----~a~~Ai~ 81 (99)
T 2la6_A 13 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLK-------GEATVSFDDPP----SAKAAID 81 (99)
T ss_dssp CSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEE-------EEEEEEBSSHH----HHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCee-------eEEEEEECCHH----HHHHHHH
Confidence 346899999999999999999999999999 9999999888999 99999999999 8888888
Q ss_pred hccC
Q 024698 94 NFNQ 97 (264)
Q Consensus 94 ~~~~ 97 (264)
.+++
T Consensus 82 ~l~g 85 (99)
T 2la6_A 82 WFDG 85 (99)
T ss_dssp HHTT
T ss_pred HhCC
Confidence 8876
No 261
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.23 E-value=7.7e-12 Score=88.00 Aligned_cols=61 Identities=10% Similarity=0.141 Sum_probs=54.4
Q ss_pred Ccccccccchh------cHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 24 NLETKKSESEF------TVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 24 ~~~~~~~~~~~------t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.....||++.+ |+++|+++|++||+|.+|+++ +.+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 3 ~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~-------g~afV~f~~~~----~A~~Ai~~lng 69 (81)
T 2krb_A 3 VIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTK-------GYIFLEYASPA----HAVDAVKNADG 69 (81)
T ss_dssp EEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCC-------CEEEEEESSHH----HHHHHHTTSSS
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEe-------EEEEEEECCHH----HHHHHHHHhcC
Confidence 45678899988 889999999999999999998 3556888 99999999999 88899998887
No 262
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.22 E-value=1.3e-11 Score=94.01 Aligned_cols=63 Identities=10% Similarity=0.098 Sum_probs=58.4
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.+..+.||+.++|+++|+++|++||+|.+|+++.+. +++++ |||||+|.+.+ +|.+|+..+++
T Consensus 36 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~-------g~afV~f~~~~----~A~~Ai~~l~g 98 (124)
T 2kt5_A 36 AKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSL-------GTADVHFERRA----DALKAMKQYKG 98 (124)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCC-------SEEEEEESSHH----HHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEe-------eEEEEEECCHH----HHHHHHHHcCC
Confidence 367899999999999999999999999999999998 77889 99999999999 88888888876
No 263
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.22 E-value=8.7e-12 Score=86.19 Aligned_cols=59 Identities=7% Similarity=0.036 Sum_probs=54.3
Q ss_pred cccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhh
Q 024698 25 LETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNN 94 (264)
Q Consensus 25 ~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~ 94 (264)
....||+.++|+++|+++|++||+|.+|.+++++.+++++ |||||+|.+.+ +|.+|+..
T Consensus 2 l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~-------g~afV~f~~~~----~a~~Ai~~ 60 (75)
T 1iqt_A 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRR-------GFCFITFKEEE----PVKKIMEK 60 (75)
T ss_dssp EEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSC-------CCEEEECSSSH----HHHHHHTT
T ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcC-------CEEEEEECCHH----HHHHHHHh
Confidence 4578999999999999999999999999999999888899 99999999999 77788774
No 264
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.22 E-value=1.1e-11 Score=92.37 Aligned_cols=64 Identities=8% Similarity=0.012 Sum_probs=59.9
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
....+.||+.++|+++|+++|++||+|.+|+++.+..+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 27 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~-------g~afV~f~~~~----~A~~Ai~~l~g 90 (110)
T 1oo0_B 27 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSK-------GYALVEYETHK----QALAAKEALNG 90 (110)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBC-------SEEEEEESSHH----HHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcc-------eEEEEEECCHH----HHHHHHHHcCC
Confidence 468999999999999999999999999999999999888999 99999999999 88888888876
No 265
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=7.1e-12 Score=93.99 Aligned_cols=63 Identities=8% Similarity=-0.010 Sum_probs=58.6
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.+..+.||+.++|+++|+++|++||.|.+|+++.+..+++++ |||||+|.+.+ +|.+|+ .+++
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~-------g~afV~f~~~~----~a~~A~-~l~g 88 (114)
T 2cq4_A 26 RTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSK-------GIAYVEFCEIQ----SVPLAI-GLTG 88 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCC-------CCEEEEESCGG----GHHHHH-HHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccC-------cEEEEEeCcHH----HHHHHH-HcCC
Confidence 467999999999999999999999999999999999988999 99999999999 888888 7776
No 266
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.21 E-value=1.2e-11 Score=95.24 Aligned_cols=63 Identities=8% Similarity=0.032 Sum_probs=54.9
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccE--EEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHh
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAK--EFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRN 93 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~--i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~ 93 (264)
+.++.+.||++++|+++|+++|++||.|.. |+|++++.++++| |||||+|.+. +|. .|...++
T Consensus 23 ~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~r-------G~aFV~f~~~-~a~-~Ai~~l~ 87 (131)
T 2m2b_A 23 NDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNR-------GFAFIQLSTI-EAA-QLLQILQ 87 (131)
T ss_dssp CCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBC-------SCEEEECCHH-HHH-HHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcc-------eEEEEEECCH-HHH-HHHHHhc
Confidence 457899999999999999999999999966 9999999888999 9999999999 666 4444443
No 267
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.21 E-value=8e-12 Score=99.31 Aligned_cols=64 Identities=9% Similarity=0.010 Sum_probs=60.7
Q ss_pred CCcccccccchhcHHHHHHHhhccC--CccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLN--PLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G--~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.+.++.||++++|+++|+++|++|| .|.+|+++.++.++++| |||||+|.+.+ +|.+|+..+++
T Consensus 56 ~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~sk-------GfaFV~f~~~~----~A~~Ai~~lng 121 (156)
T 3n9u_C 56 AAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSK-------GYAEVVVASEN----SVHKLLELLPG 121 (156)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEE-------EEEEEEESCHH----HHHHHHHHSTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccc-------eEEEEEECCHH----HHHHHHHHcCC
Confidence 4789999999999999999999999 99999999999999999 99999999999 88899999887
No 268
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=1.6e-11 Score=90.30 Aligned_cols=63 Identities=11% Similarity=0.009 Sum_probs=57.6
Q ss_pred CCCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhh
Q 024698 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNN 94 (264)
Q Consensus 21 ~~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~ 94 (264)
........||++++|+++|+++|++||+|.+|+++.++.+++++ |||||+|.+.+ +|.+|+..
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~-------g~afV~f~~~~----~a~~A~~~ 76 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSK-------GFGFVRFTEYE----TQVKVMSQ 76 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEE-------EEEEEEESSHH----HHHHHHHS
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCcc-------ceEEEEECCHH----HHHHHHHc
Confidence 34578999999999999999999999999999999999888999 99999999999 77777764
No 269
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.20 E-value=1.3e-11 Score=94.13 Aligned_cols=65 Identities=9% Similarity=0.005 Sum_probs=60.3
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
+....+.||+.++|+++|+++|++||+|.+|.|+.+..+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 22 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~-------g~afV~f~~~~----~a~~A~~~l~g 86 (126)
T 3ex7_B 22 GWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLK-------GYTLVEYETYK----EAQAAMEGLNG 86 (126)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBC-------SCEEEEESSHH----HHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccc-------eEEEEEECCHH----HHHHHHHHhCC
Confidence 3478999999999999999999999999999999999888889 99999999999 88888888876
No 270
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.20 E-value=1e-11 Score=96.33 Aligned_cols=65 Identities=12% Similarity=0.115 Sum_probs=60.3
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
..+..+.||+.++|+++|+++|++||+|.+|++++++.+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 42 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~-------g~afV~f~~~~----~a~~A~~~l~g 106 (139)
T 1u6f_A 42 LRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSR-------GYGFVKFQSGS----SAQQAIAGLNG 106 (139)
T ss_dssp TSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEE-------EEEEEEESSHH----HHHHHHHHTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcc-------eEEEEEECCHH----HHHHHHHHhCC
Confidence 3467899999999999999999999999999999999888899 99999999999 88888888876
No 271
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=1.1e-11 Score=91.20 Aligned_cols=64 Identities=14% Similarity=0.096 Sum_probs=60.1
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.+....||+.++|+++|+++|++||+|.+|+++.+..+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 9 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~-------g~afV~f~~~~----~a~~A~~~l~g 72 (104)
T 1p1t_A 9 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPK-------GYGFCEYQDQE----TALSAMRNLNG 72 (104)
T ss_dssp SCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEE-------EEEEEECSCHH----HHHHHHHHSSS
T ss_pred cEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccc-------eEEEEEECCHH----HHHHHHHHhCC
Confidence 578999999999999999999999999999999998888899 99999999999 88899988886
No 272
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.20 E-value=5.5e-12 Score=91.89 Aligned_cols=64 Identities=9% Similarity=0.089 Sum_probs=59.4
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
......||++++|+++|+++|++||.|.+++++.+..+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 16 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~-------g~afV~f~~~~----~a~~Ai~~l~g 79 (98)
T 2cqp_A 16 TIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPT-------GEAMVAFESRD----EATAAVIDLND 79 (98)
T ss_dssp EEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEE-------EEEEEEESCHH----HHHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCee-------eEEEEEECCHH----HHHHHHHHhCC
Confidence 467899999999999999999999999999999998888999 99999999999 88899988886
No 273
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.20 E-value=9.7e-12 Score=90.56 Aligned_cols=65 Identities=11% Similarity=0.075 Sum_probs=59.2
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCC---CCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYH---QHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~---~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
+......||+.++|+++|+++|++||+|.+|+++++.. +++++ |||||+|.+.+ +|.+|+..+++
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~-------g~afV~f~~~~----~a~~A~~~l~g 72 (98)
T 2cpf_A 5 SSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSM-------GFGFVEYKKPE----QAQKALKQLQG 72 (98)
T ss_dssp CCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEE-------EEEEEEESSHH----HHHHHHHHSTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcc-------cEEEEEECCHH----HHHHHHHHhCC
Confidence 35789999999999999999999999999999999886 55788 99999999999 88899988887
No 274
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.6e-11 Score=90.32 Aligned_cols=64 Identities=8% Similarity=0.015 Sum_probs=58.7
Q ss_pred CCCcccccccchhcHHHHHHHhhc-cCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTK-LNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~-~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
..+..+.||+.++|+++|+++|++ ||+|.+|+++++. +++++ |||||+|.+.+ +|.+|+..+++
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~-------g~afV~f~~~~----~a~~A~~~l~g 73 (104)
T 2dhg_A 9 EYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSK-------GYGFVKFTDEL----EQKRALTECQG 73 (104)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEE-------EEEEEEESCHH----HHHHHHHHTTT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCcc-------ceEEEEECCHH----HHHHHHHHccC
Confidence 357899999999999999999999 9999999999998 77899 99999999999 78888887775
No 275
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.19 E-value=9e-12 Score=88.70 Aligned_cols=64 Identities=6% Similarity=0.133 Sum_probs=58.2
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCC-ccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHT-DHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~-~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.+....||+.++|+++|+++|++||+|.++.++.+..++. ++ |||||+|.+.+ +|.+|+..+++
T Consensus 5 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~-------g~afV~f~~~~----~a~~A~~~l~g 69 (88)
T 4a8x_A 5 TKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSK-------GYAYVEFENPD----EAEKALKHMDG 69 (88)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEEC-------SEEEEEESSHH----HHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCC-------cEEEEEEecHH----HHHHHHHHcCC
Confidence 4678899999999999999999999999999999987654 77 99999999999 88888888876
No 276
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.19 E-value=4.8e-12 Score=91.59 Aligned_cols=64 Identities=9% Similarity=0.092 Sum_probs=59.3
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
......||++++|+++|+++|++||.|.+++++.+..+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~-------g~afV~f~~~~----~a~~Ai~~l~g 79 (95)
T 2ek1_A 16 TVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPT-------GEAMVAFESRD----EATAAVIDLND 79 (95)
T ss_dssp EEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEE-------EEEEEEESSHH----HHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEe-------eEEEEEECCHH----HHHHHHHHhCC
Confidence 467899999999999999999999999999999998888899 99999999999 88888888876
No 277
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.18 E-value=7.2e-12 Score=95.31 Aligned_cols=63 Identities=8% Similarity=-0.004 Sum_probs=58.5
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.+..+.||+.++|+++|+++|++||+|.+|++++++.+++++ |||||+|.+.+ +|.+|+ .+++
T Consensus 37 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~-------g~afV~f~~~~----~a~~A~-~l~g 99 (124)
T 2jwn_A 37 RSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPK-------GYAYIEFAERN----SVDAAV-AMDE 99 (124)
T ss_dssp TEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCE-------EEEEEEESSHH----HHHHHH-TTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcc-------cEEEEEECCHH----HHHHHH-hcCC
Confidence 467899999999999999999999999999999998888999 99999999999 888888 6776
No 278
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=3.3e-11 Score=90.46 Aligned_cols=62 Identities=10% Similarity=0.084 Sum_probs=55.6
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCC---CCccccccCCCceEEeccCCcccccchHHHHHhhc
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQ---HTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNF 95 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~---~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~ 95 (264)
..+..+.||++++|+++|+++|++||+|. +.++.+..+ |++| |||||+|.+.+ +|.+|+..+
T Consensus 8 ~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~-------G~aFV~f~~~~----~a~~Ai~~~ 72 (114)
T 2dnl_A 8 SRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPK-------GYAFLLFQEES----SVQALIDAC 72 (114)
T ss_dssp CCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTT-------SEEEECCSSHH----HHHHHHHHS
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcc-------cEEEEEECCHH----HHHHHHHhh
Confidence 35789999999999999999999999999 889888876 6888 99999999999 777777766
No 279
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=2.5e-11 Score=89.24 Aligned_cols=65 Identities=12% Similarity=0.134 Sum_probs=57.8
Q ss_pred CCCCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 20 NKNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 20 ~~~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.......+.||+.++|+++|+++|++||+|.+|+++.+..+ ++ |||||+|.+.+ +|.+|+..+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~--~~-------g~afV~f~~~~----~a~~A~~~l~g 77 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SK-------GFGFVTFENSA----DADRAREKLHG 77 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT--TC-------CEEEEEESCHH----HHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC--Cc-------EEEEEEECCHH----HHHHHHHHhCC
Confidence 34457899999999999999999999999999999988653 66 99999999999 88888888876
No 280
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=2.1e-11 Score=91.60 Aligned_cols=64 Identities=5% Similarity=-0.093 Sum_probs=57.7
Q ss_pred CCCCcccccccchhcHHHHHHHhhccCCc-cEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 21 KNNNLETKKSESEFTVQKLVDMFTKLNPL-AKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 21 ~~~~~~~~~~~~~~t~~~L~~~F~~~G~i-~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
......+.||++++|+++|+++|++||.| .+|+|+++. +++++ |||||+|.+.+ +|.+|+.. ++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~-------G~afV~F~~~~----~a~~Al~~-~~ 78 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGL-------GQALVQFKNED----DARKSERL-HR 78 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCS-------SCEEEECSSHH----HHHHHGGG-CS
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcc-------eEEEEEECCHH----HHHHHHHh-CC
Confidence 34578999999999999999999999999 899999998 77899 99999999999 88888876 54
No 281
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=2.3e-11 Score=91.01 Aligned_cols=64 Identities=9% Similarity=0.082 Sum_probs=58.8
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
+....+.||+.++|+++|+++|++||+|.+|+++.+.. ++++ |||||+|.+.+ +|.+|+..+++
T Consensus 15 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-g~~~-------g~afV~f~~~~----~a~~A~~~l~g 78 (114)
T 2do0_A 15 GSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSR-------GIGTVTFEQSI----EAVQAISMFNG 78 (114)
T ss_dssp CSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-CSEE-------EEEEEEESSHH----HHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCee-------eEEEEEECCHH----HHHHHHHHhCC
Confidence 45789999999999999999999999999999999885 6888 99999999999 88888888876
No 282
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.18 E-value=3.9e-11 Score=86.19 Aligned_cols=63 Identities=13% Similarity=0.023 Sum_probs=56.9
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
+......||+.++|+++|+++|++||+|.+|+++++ +++++ |||||+|.+.+ +|.+|+..+++
T Consensus 8 ~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~-------g~afV~f~~~~----~a~~a~~~l~g 70 (92)
T 2dgv_A 8 ACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSK-------GCGVVKFESPE----VAERACRMMNG 70 (92)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEE-------EEEEEEESSHH----HHHHHHHHHTT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcc-------eEEEEEECCHH----HHHHHHHHhCC
Confidence 457899999999999999999999999999999974 56788 99999999999 88888888876
No 283
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=2.7e-11 Score=90.28 Aligned_cols=63 Identities=13% Similarity=0.133 Sum_probs=56.8
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.......||+.++|+++|+++|++||+|.+|+++++.. +++ |||||+|.+.+ +|.+|+..+++
T Consensus 29 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--~~k-------g~afV~f~~~~----~A~~Ai~~l~g 91 (109)
T 2err_A 29 PKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSK-------GFGFVTFENSA----DADRAREKLHG 91 (109)
T ss_dssp CCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT--BCT-------TEEEEECCCSH----HHHHHHHHHTT
T ss_pred CCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC--CCc-------eEEEEEECCHH----HHHHHHHHcCC
Confidence 45789999999999999999999999999999999864 467 99999999999 88888888876
No 284
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=2.4e-11 Score=90.24 Aligned_cols=65 Identities=12% Similarity=0.040 Sum_probs=59.2
Q ss_pred CCCcccccccchhcHHHHHHHhhccCC-ccEEEcc-ccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNP-LAKEFFP-SYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~-i~~i~i~-~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
+.+....||+.++|+++|+++|++||+ |.+|.++ .+..+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~-------g~afV~f~~~~----~A~~A~~~l~~ 74 (109)
T 2dis_A 8 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNR-------GFAFVEYESHR----AAAMARRKLMP 74 (109)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTC-------CEEEEEESSHH----HHHHHHTTTTT
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcC-------cEEEEEecCHH----HHHHHHHHhhC
Confidence 346899999999999999999999998 9999999 788888889 99999999999 88899998863
No 285
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=2.6e-11 Score=90.83 Aligned_cols=63 Identities=14% Similarity=0.076 Sum_probs=58.9
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.+..+.||+.++|+++|+++|++||+|.+|+++++. +++++ |||||+|.+.+ +|.+|+..+++
T Consensus 26 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~-------g~afV~f~~~~----~a~~A~~~l~g 88 (114)
T 1x5o_A 26 TNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSR-------GVGFARMESTE----KCEAVIGHFNG 88 (114)
T ss_dssp TEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEE-------EEEEEEESCHH----HHHHHHHHHBT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcc-------eEEEEEECCHH----HHHHHHHHhCC
Confidence 477899999999999999999999999999999998 77889 99999999999 88899988887
No 286
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.17 E-value=2.3e-11 Score=92.04 Aligned_cols=63 Identities=6% Similarity=-0.031 Sum_probs=57.3
Q ss_pred CCCcccccccchhcHHHHHHHhhccCC---ccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNP---LAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~---i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.....+.||++++|+++|+++|++||. |.+|+|+.+.. ++++ |||||+|.+.+ +|.+|+. +++
T Consensus 17 ~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~-------G~afV~F~~~~----~a~~Al~-~~g 82 (118)
T 2db1_A 17 GYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQS-------GEAFVELESED----DVKLALK-KDR 82 (118)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEE-------EEEEEEBSSHH----HHHHHGG-GTT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCC-------eEEEEEECCHH----HHHHHHh-cCC
Confidence 346899999999999999999999999 89999999987 6899 99999999999 8888888 654
No 287
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=1.6e-11 Score=89.32 Aligned_cols=63 Identities=6% Similarity=0.068 Sum_probs=57.4
Q ss_pred CCCCcccccccchhcHHHHH----HHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhcc
Q 024698 21 KNNNLETKKSESEFTVQKLV----DMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFN 96 (264)
Q Consensus 21 ~~~~~~~~~~~~~~t~~~L~----~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~ 96 (264)
++.+..+.||++++|+++|+ ++|++||+|.+|+++++..+ | |||||+|.+.+ +|.+|+..++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---r-------g~afV~f~~~~----~A~~Ai~~l~ 73 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---Q-------LKAVVQMENLQ----DAIGAVNSLH 73 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---T-------CCEEEEESSHH----HHHHHHHHHT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---C-------eEEEEEECCHH----HHHHHHHHhC
Confidence 34578999999999999999 99999999999999998865 6 99999999999 8889988888
Q ss_pred C
Q 024698 97 Q 97 (264)
Q Consensus 97 ~ 97 (264)
+
T Consensus 74 g 74 (96)
T 2dgx_A 74 R 74 (96)
T ss_dssp T
T ss_pred C
Confidence 6
No 288
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=2.3e-11 Score=89.42 Aligned_cols=64 Identities=13% Similarity=0.081 Sum_probs=58.3
Q ss_pred CCCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 21 ~~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
...+..+.||+.++|+++|+++|++||+|.+|+++.+ +++++ |||||+|.+.+ +|.+|+..+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~-------g~afV~f~~~~----~A~~A~~~l~g 77 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSK-------GFGFVCFSSPE----EATKAVTEMNG 77 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEE-------EEEEEEESSHH----HHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcC-------EEEEEEECCHH----HHHHHHHHhCC
Confidence 3457899999999999999999999999999999998 66888 99999999999 88888888876
No 289
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=2.6e-11 Score=89.50 Aligned_cols=63 Identities=11% Similarity=0.062 Sum_probs=56.2
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccE-EEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAK-EFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~-i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.....+.||++++|+++|+++|++||.|.+ |+|+.+ .+++++ |||||+|.+.+ +|.+|+.. ++
T Consensus 15 ~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~-------G~afV~F~~~~----~a~~A~~~-~~ 78 (104)
T 1wg5_A 15 DGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRST-------GEAFVQFASQE----IAEKALKK-HK 78 (104)
T ss_dssp CCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBC-------SEEEEEESSHH----HHHHHHTT-TT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcc-------eEEEEEECCHH----HHHHHHHh-Cc
Confidence 357899999999999999999999999998 899988 667889 99999999999 88888876 44
No 290
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.17 E-value=1.8e-11 Score=90.61 Aligned_cols=64 Identities=11% Similarity=0.117 Sum_probs=59.1
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
+....+.||+.++|+++|+++|++||+|.+|.++.+. +++++ |||||+|.+.+ +|.+|+..|++
T Consensus 29 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~-------g~afV~f~~~~----~a~~A~~~l~g 92 (107)
T 3ulh_A 29 GGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSL-------GTADVHFERKA----DALKAMKQYNG 92 (107)
T ss_dssp SEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEE-------EEEEEEESSHH----HHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcc-------eEEEEEECCHH----HHHHHHHHhCC
Confidence 3478999999999999999999999999999999998 77889 99999999999 88888888876
No 291
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=2.1e-11 Score=92.99 Aligned_cols=61 Identities=11% Similarity=0.031 Sum_probs=54.4
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCc----cEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhh
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPL----AKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNN 94 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i----~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~ 94 (264)
.....+.||++++|+++|+++|++||+| .+|+|+.+. +++++ |||||+|.+.+ +|.+|+..
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~-------G~aFV~F~~~~----~A~~Al~~ 87 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPT-------GDAFVLFACEE----YAQNALRK 87 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEE-------EEEEECCSSHH----HHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEe-------eEEEEEECCHH----HHHHHHHh
Confidence 4578999999999999999999999985 699999985 67999 99999999999 77788764
No 292
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.16 E-value=3.7e-11 Score=88.86 Aligned_cols=63 Identities=10% Similarity=0.153 Sum_probs=56.9
Q ss_pred CCCcccccccchh------cHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhc
Q 024698 22 NNNLETKKSESEF------TVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNF 95 (264)
Q Consensus 22 ~~~~~~~~~~~~~------t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~ 95 (264)
.....+.||++.+ |+++|+++|++||+|.+|+++ ..+|+++ |||||+|.+.+ +|.+|+..+
T Consensus 15 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~-------G~afV~f~~~~----~A~~Ai~~l 81 (105)
T 2nlw_A 15 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTK-------GYIFLEYASPA----HAVDAVKNA 81 (105)
T ss_dssp CSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSC-------CEEEEEECSSS----HHHHHHHHC
T ss_pred CCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCee-------eEEEEEECCHH----HHHHHHHHh
Confidence 3568999999999 899999999999999999999 3556888 99999999999 888999988
Q ss_pred cC
Q 024698 96 NQ 97 (264)
Q Consensus 96 ~~ 97 (264)
++
T Consensus 82 ~g 83 (105)
T 2nlw_A 82 DG 83 (105)
T ss_dssp SS
T ss_pred CC
Confidence 87
No 293
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=2.7e-11 Score=89.00 Aligned_cols=64 Identities=8% Similarity=0.060 Sum_probs=57.6
Q ss_pred CCCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 21 ~~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
......+.||+.++|+++|+++|++||+|.+|+++++..+ ++ |||||+|.+.+ +|.+|+..+++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~-------g~afV~f~~~~----~a~~A~~~l~g 77 (103)
T 2cqi_A 14 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--ND-------PYCFVEFYEHR----DAAAALAAMNG 77 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SC-------CEEEEEESSHH----HHHHHHHHHTT
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CC-------CEEEEEECCHH----HHHHHHHHhCC
Confidence 3457899999999999999999999999999999998654 56 99999999999 88888888876
No 294
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.16 E-value=2.5e-11 Score=89.24 Aligned_cols=62 Identities=5% Similarity=-0.039 Sum_probs=57.8
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
....+.||++++|+++|+++|++|| |.+|+++++..+++++ |||||+|.+.+ +|.+|+ .+++
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~-------g~afV~f~~~~----~a~~A~-~l~g 77 (103)
T 2dng_A 16 YTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFK-------GFCYVEFDEVD----SLKEAL-TYDG 77 (103)
T ss_dssp EEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEE-------EEEEEEESSHH----HHHHHG-GGTT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccc-------eEEEEEECCHH----HHHHHH-hhCC
Confidence 4789999999999999999999997 9999999999988999 99999999999 888888 7776
No 295
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.16 E-value=1.8e-11 Score=95.07 Aligned_cols=62 Identities=8% Similarity=-0.069 Sum_probs=56.9
Q ss_pred CCcccccccchhcHHHHHHHhhccCC---ccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNP---LAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~---i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
....+.||++++|+++|+++|++||. |.+|+|++++. ++++ |||||+|.+.+ +|.+|+. +++
T Consensus 45 ~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~sr-------G~aFV~F~~~e----~a~~Al~-~~g 109 (136)
T 2hgl_A 45 FVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQS-------GEAFVELGSED----DVKMALK-KDR 109 (136)
T ss_dssp CEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEE-------EEEEEECSSHH----HHHHHHT-TTE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCC-------eEEEEEECCHH----HHHHHHh-cCC
Confidence 46799999999999999999999999 89999999988 7999 99999999999 8888887 654
No 296
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=3.3e-11 Score=88.79 Aligned_cols=62 Identities=11% Similarity=0.067 Sum_probs=57.5
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCC-CCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQ-HTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~-~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
....+.||++++|+++|+++|++|| |.+|+++++..+ ++++ |||||+|.+.+ +|.+|+ .+++
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~-------g~afV~f~~~~----~a~~A~-~l~g 78 (104)
T 1wi8_A 16 YTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLK-------GFGYAEFEDLD----SLLSAL-SLNE 78 (104)
T ss_dssp EEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBC-------SCEEEEESSHH----HHHHHH-GGGT
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcC-------eEEEEEECCHH----HHHHHH-hcCC
Confidence 4678999999999999999999999 999999999987 7889 99999999999 888888 7776
No 297
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.15 E-value=3.1e-11 Score=89.36 Aligned_cols=59 Identities=7% Similarity=0.017 Sum_probs=51.9
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
+....+.||++++|+++|+++|++||+|.+|+++++ | |||||+|.+.+ +|.+|+..+++
T Consensus 15 ~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------k-------g~aFVef~~~~----~A~~Ai~~l~~ 73 (104)
T 1wex_A 15 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------K-------RQALVEFENID----SAKECVTFAAD 73 (104)
T ss_dssp CSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------T-------TEEEEEESSHH----HHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------C-------CEEEEEECCHH----HHHHHHHHhcc
Confidence 357899999999999999999999999999999863 5 99999999999 77777776654
No 298
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=3e-11 Score=89.02 Aligned_cols=61 Identities=10% Similarity=-0.010 Sum_probs=54.4
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
....+.||++++|+++|+++|++|| +++|+|++++ +++++ |||||+|.+.+ +|.+|+. +++
T Consensus 16 ~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~-------G~afV~F~~~~----~a~~Al~-~~~ 76 (102)
T 1wez_A 16 HCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVT-------GEADVEFATHE----DAVAAMA-KDK 76 (102)
T ss_dssp CEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEE-------EEEEEECSSSH----HHHHHHT-TSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEe-------eEEEEEECCHH----HHHHHHH-hCC
Confidence 4689999999999999999999999 4599999998 67999 99999999999 8888884 454
No 299
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=5.7e-11 Score=88.27 Aligned_cols=63 Identities=8% Similarity=0.045 Sum_probs=55.7
Q ss_pred CCCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 21 ~~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
......+.||+.++|+++|+++|++||+|.+|+++.+. +++ |||||+|.+.+ +|.+|+..+++
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~---~~~-------g~afV~f~~~~----~A~~A~~~l~g 83 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR---GGP-------PFAFVEFEDPR----DAEDAVYGRDG 83 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS---SSS-------CCEEEEESCHH----HHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC---CCC-------cEEEEEECCHH----HHHHHHHHcCC
Confidence 34578999999999999999999999999999997653 466 99999999999 88888888876
No 300
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=2.7e-11 Score=91.07 Aligned_cols=61 Identities=11% Similarity=-0.023 Sum_probs=56.9
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhh
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNN 94 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~ 94 (264)
....+.||+.++|+++|+++|++||+|.+|+++.+..+++++ |||||+|.+.+ +|.+|+..
T Consensus 28 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~-------g~afV~f~~~~----~a~~Ai~~ 88 (116)
T 1x4b_A 28 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSR-------GFGFVTFSSMA----EVDAAMAA 88 (116)
T ss_dssp TEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCC-------SEEEEECSSHH----HHHHHHTS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcC-------ceEEEEeCCHH----HHHHHHHh
Confidence 367899999999999999999999999999999999888999 99999999999 88888876
No 301
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.13 E-value=1.8e-11 Score=89.67 Aligned_cols=63 Identities=11% Similarity=0.064 Sum_probs=57.3
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccC-CCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYY-HQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~-~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
..+....||++++|+++|+++|++|| |.+|+++++. .+++++ |||||+|.+.+ +|.+|+ .+++
T Consensus 19 ~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~-------g~afV~f~~~~----~a~~Ai-~l~g 82 (100)
T 2j76_E 19 PYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLK-------GFGYAEFEDLD----SLLSAL-SLNE 82 (100)
T ss_dssp -CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCC-------SCEEEEECCHH----HHHHHH-HTTT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccC-------eEEEEEECCHH----HHHHHH-hcCC
Confidence 45789999999999999999999999 9999999998 577889 99999999999 888888 7776
No 302
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.13 E-value=2.8e-11 Score=88.78 Aligned_cols=59 Identities=3% Similarity=0.039 Sum_probs=55.0
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHh
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRN 93 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~ 93 (264)
......||++++|+++|+++|++||+|.+|+++++. +++++ |||||+|.+.+ +|.+|+.
T Consensus 10 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~-------g~afV~f~~~~----~a~~Ai~ 68 (102)
T 2xs2_A 10 NTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSK-------GYGFVSFYNDV----DVQKIVE 68 (102)
T ss_dssp EEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEE-------EEEEEEESSCC----CHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCcc-------ceEEEEECCHH----HHHHHHh
Confidence 467899999999999999999999999999999998 77899 99999999999 7778887
No 303
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.13 E-value=4.1e-11 Score=94.82 Aligned_cols=65 Identities=14% Similarity=0.060 Sum_probs=60.4
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.....+.||+.++|+++|+++|++||+|.+|.|+.+..+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 39 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~-------g~afV~f~~~~----~A~~Ai~~l~g 103 (156)
T 1h2v_Z 39 SCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTAC-------GFCFVEYYSRA----DAENAMRYING 103 (156)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEE-------EEEEEEESSHH----HHHHHHHHTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccc-------eEEEEEECCHH----HHHHHHHHhCC
Confidence 3477999999999999999999999999999999999988899 99999999999 88889888876
No 304
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.12 E-value=2.5e-11 Score=88.98 Aligned_cols=59 Identities=8% Similarity=0.050 Sum_probs=52.7
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
+....++||++++|+++|+++|++||+|.++++++ +| |||||+|.+.+ +|.+|+..+++
T Consensus 21 s~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~k-------g~AFVef~~~~----~A~~Av~~ln~ 79 (100)
T 3r27_A 21 SPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KK-------RQALVEFEDVL----GACNAVNYAAD 79 (100)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TT-------TEEEEEESSHH----HHHHHHHHHHH
T ss_pred CcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CC-------CEEEEEECCHH----HHHHHHHHhcC
Confidence 35689999999999999999999999999999974 35 99999999999 88888887765
No 305
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.12 E-value=2.6e-10 Score=81.31 Aligned_cols=72 Identities=26% Similarity=0.310 Sum_probs=61.3
Q ss_pred CCCEEEEcCCCC----CCCH----HHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhCCceeCCeeEE
Q 024698 115 VRRTVYVSDIDQ----NITE----ERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVR 186 (264)
Q Consensus 115 ~~~~lfV~nLp~----~~te----~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~ 186 (264)
...||+|.-.|. +.-. .+|.+.|++||+|..++++.|+ +||+|.+.++|.+|++|||..+.||.|+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~------~fVtF~d~~sAlaAi~mnG~~v~Gr~Lk 79 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK------MWVTFLEGSSALNVLSLNGKELLNRTIT 79 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS------EEEEESSHHHHHHGGGGTTCEETTEEEE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC------EEEEECChHHHHHHHhcCCeEeCCeEEE
Confidence 456888887662 3333 6788999999999999998764 8999999999999999999999999999
Q ss_pred EeeCCC
Q 024698 187 VLPSKT 192 (264)
Q Consensus 187 V~~~~~ 192 (264)
|..+++
T Consensus 80 V~lkt~ 85 (91)
T 2dnr_A 80 IALKSP 85 (91)
T ss_dssp EEECCC
T ss_pred EEeCCC
Confidence 998654
No 306
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.12 E-value=4e-11 Score=91.26 Aligned_cols=66 Identities=6% Similarity=-0.116 Sum_probs=54.3
Q ss_pred cccccc----cchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCC----cccccchHHHHHh--h
Q 024698 25 LETKKS----ESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQS----AIDNFNNNRRRRN--N 94 (264)
Q Consensus 25 ~~~~~~----~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~----~~~a~~~A~~a~~--~ 94 (264)
..+-|+ ++.+++.+|+++|++||+|.+|.++.|+.||+++ |||||+|.+ ++++...|.+|+. .
T Consensus 5 I~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~sl-------GfgfVef~d~~g~~d~a~kAA~kAi~~~~ 77 (136)
T 2j8a_A 5 IVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPL-------HVYLIKYASSDGKINDAAKAAFSAVRKHE 77 (136)
T ss_dssp EEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEE-------EEEEEECC------CCHHHHHHHHHHHTT
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcee-------eEEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 456678 9999999999999999999999999999999999 999999997 5533334777777 4
Q ss_pred ccC
Q 024698 95 FNQ 97 (264)
Q Consensus 95 ~~~ 97 (264)
+++
T Consensus 78 lng 80 (136)
T 2j8a_A 78 SSG 80 (136)
T ss_dssp TTC
T ss_pred hcC
Confidence 444
No 307
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.12 E-value=3.9e-11 Score=93.47 Aligned_cols=61 Identities=10% Similarity=-0.004 Sum_probs=55.2
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
....+.||++++|+++|+++|++|| |++|+|+.++. ++++ |||||+|.+.+ +|.+|+ .+++
T Consensus 47 ~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~sr-------GfaFV~F~~~e----~A~~Al-~~~g 107 (139)
T 2hgn_A 47 HCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVT-------GEADVEFATHE----EAVAAM-SKDR 107 (139)
T ss_dssp CCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSS-------CCCEEECSHHH----HHHHHT-TCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCc-------eEEEEEeCCHH----HHHHHH-hhCC
Confidence 4679999999999999999999999 77999999987 6899 99999999999 888888 5554
No 308
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.12 E-value=3.9e-11 Score=101.26 Aligned_cols=63 Identities=13% Similarity=0.019 Sum_probs=59.8
Q ss_pred CcccccccchhcHHHHHHHhhccC--CccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 24 NLETKKSESEFTVQKLVDMFTKLN--PLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~~G--~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
++++.||++++|+++|+++|++|| +|.+|+|++++.++++| |||||+|.+.+ +|.+|+..|++
T Consensus 70 ~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~sk-------GfaFV~f~~~~----~a~~Ai~~lng 134 (229)
T 3q2s_C 70 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSK-------GFALVGVGSEA----SSKKLMDLLPK 134 (229)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEE-------EEEEEEESCTT----HHHHHHTTSTT
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccc-------eEEEEEECCHH----HHHHHHHHcCC
Confidence 578999999999999999999999 99999999999999999 99999999999 88899998886
No 309
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.11 E-value=4.3e-11 Score=88.78 Aligned_cols=63 Identities=8% Similarity=-0.030 Sum_probs=57.0
Q ss_pred CCCcccccccchhcHHHHHHHhhccCC---ccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNP---LAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~---i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.....+.||++++|+++|+++|++||. |.+|+++++.. ++++ |||||+|.+.+ +|.+|+. +++
T Consensus 11 ~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~-------G~afV~F~~~~----~a~~Al~-~~~ 76 (107)
T 2lmi_A 11 VFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRR-------GDALIEMESEQ----DVQKALE-KHR 76 (107)
T ss_dssp CCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTC-------SEEEEEBSSHH----HHHHHHT-TTT
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEe-------eEEEEEECCHH----HHHHHHH-hCc
Confidence 346899999999999999999999998 99999999988 7999 99999999999 8888887 654
No 310
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=3.8e-11 Score=89.62 Aligned_cols=60 Identities=8% Similarity=-0.064 Sum_probs=54.4
Q ss_pred CcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
...+.||++++|+++|+++|++| .|.+|+|+.++. ++++ |||||+|.+.+ +|.+|+ .+++
T Consensus 18 ~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~-------G~afV~F~~~~----~a~~Al-~~~~ 77 (109)
T 2dnn_A 18 YVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNN-------GNGLVKFLSPQ----DTFEAL-KRNR 77 (109)
T ss_dssp EEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCC-------SEEEEECSSHH----HHHHHH-HTTT
T ss_pred EEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCC-------eEEEEEECCHH----HHHHHH-hcCC
Confidence 67999999999999999999999 899999999986 6889 99999999999 777887 4554
No 311
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=5.4e-11 Score=89.30 Aligned_cols=59 Identities=10% Similarity=0.166 Sum_probs=52.7
Q ss_pred CCccccc--ccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccCC
Q 024698 23 NNLETKK--SESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQG 98 (264)
Q Consensus 23 ~~~~~~~--~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~g 98 (264)
.++.++| |++++|+++|+++|++||+|.+|.++.+ | |||||+|.+.+ +|.+|+..+||.
T Consensus 26 ~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------r-------gfaFV~f~~~~----~A~~Ai~~lnG~ 86 (114)
T 2cq2_A 26 QSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------K-------PYSFARYRTTE----ESKRAYVTLNGK 86 (114)
T ss_dssp SEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------C-------SCEEEEESSHH----HHHHHHHHTTTC
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------C-------CEEEEEECCHH----HHHHHHHHhCCC
Confidence 4689955 9999999999999999999999998752 5 99999999999 888999999874
No 312
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.10 E-value=4.4e-11 Score=89.38 Aligned_cols=65 Identities=11% Similarity=0.014 Sum_probs=58.0
Q ss_pred CCCcccccccchhcHHHHH---HHhhccCCccEEEccccCCCC---CccccccCCCceEEeccCCcccccchHHHHHhhc
Q 024698 22 NNNLETKKSESEFTVQKLV---DMFTKLNPLAKEFFPSYYHQH---TDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNF 95 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~---~~F~~~G~i~~i~i~~~~~~~---~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~ 95 (264)
.+...+.||++++|+++|+ ++|++||+|.+|+++++..++ +++ |||||+|.+.+ +|.+|+..|
T Consensus 15 ~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~-------G~afV~f~~~~----~A~~Ai~~l 83 (111)
T 2cpi_A 15 KNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPS-------ASAYVTYIRSE----DALRAIQCV 83 (111)
T ss_dssp SSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCC-------EEEEEEESSHH----HHHHHHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCC-------eEEEEEECcHH----HHHHHHHHh
Confidence 3578999999999999999 999999999999999988643 455 99999999999 888999888
Q ss_pred cC
Q 024698 96 NQ 97 (264)
Q Consensus 96 ~~ 97 (264)
++
T Consensus 84 ng 85 (111)
T 2cpi_A 84 NN 85 (111)
T ss_dssp TT
T ss_pred CC
Confidence 87
No 313
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.10 E-value=2.4e-11 Score=89.66 Aligned_cols=58 Identities=5% Similarity=0.021 Sum_probs=51.4
Q ss_pred CCcccccccc-hhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSES-EFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~-~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.+..+.||++ ++|+++|+++|++||+|.+|+|+++ | |||||+|.+.+ +|.+|+..+++
T Consensus 16 ~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------k-------g~aFVef~~~~----~A~~Ai~~l~~ 74 (102)
T 1x4d_A 16 RVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------I-------NEAFIEMATTE----DAQAAVDYYTT 74 (102)
T ss_dssp CEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------S-------SCEEEEESSHH----HHHHHHHHHHH
T ss_pred CEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------C-------CEEEEEECCHH----HHHHHHHHHcC
Confidence 3678999999 9999999999999999999999864 4 99999999999 77788877664
No 314
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=6.6e-11 Score=89.60 Aligned_cols=57 Identities=9% Similarity=0.033 Sum_probs=51.1
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhcc
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFN 96 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~ 96 (264)
.++.+.||++++|+++|+++|++||+|.+|+++++ | |||||+|.+.+ +|.+|+..++
T Consensus 32 ~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------k-------G~AFVeF~~~e----~A~~Ai~~l~ 88 (119)
T 2ad9_A 32 RVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------K-------NQAFIEMNTEE----AANTMVNYYT 88 (119)
T ss_dssp SEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------G-------TEEEEECSCHH----HHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------C-------CEEEEEECCHH----HHHHHHHHhc
Confidence 46899999999999999999999999999999875 4 99999999999 7777777665
No 315
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.09 E-value=4.3e-11 Score=85.69 Aligned_cols=61 Identities=7% Similarity=0.012 Sum_probs=54.2
Q ss_pred cccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 25 LETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 25 ~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
....||+.++|+++|+++|++||+|.+|+++++..+++++ |||||+|.+.+ |. +|+..+++
T Consensus 4 l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~-------g~afV~f~~~~-a~----~a~~~l~g 64 (90)
T 2ki2_A 4 IYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPK-------GFGFVEMQEES-VS----EAIAKLDN 64 (90)
T ss_dssp EEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCC-------EEEEEEECTTH-HH----HHHHTSCS
T ss_pred EEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcc-------eEEEEEECCHH-HH----HHHHHhCC
Confidence 5678999999999999999999999999999999888999 99999999987 44 66666665
No 316
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=4.1e-11 Score=91.25 Aligned_cols=63 Identities=11% Similarity=0.061 Sum_probs=56.8
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
....+.||++++|+++|+++|++||.|.++.++.+..+++++ |||||+|.+.+ +|.+|+. +++
T Consensus 26 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~-------G~afV~F~~~~----~a~~Al~-~~g 88 (124)
T 1wel_A 26 FCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKAT-------GEGFVEFRNEA----DYKAALC-RHK 88 (124)
T ss_dssp CEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEE-------EEEEEEBSSSH----HHHHHHT-SCS
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCC-------eEEEEEECCHH----HHHHHHH-hCC
Confidence 477999999999999999999999999997777777788999 99999999999 8889988 765
No 317
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=1.2e-10 Score=83.56 Aligned_cols=62 Identities=5% Similarity=0.039 Sum_probs=56.8
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.......||++++|+++|+++|++| .|.+|+++++ .+++++ |||||+|.+.+ +|.+|+. +++
T Consensus 10 ~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~-------g~afV~f~~~~----~a~~A~~-~~g 71 (91)
T 2dgw_A 10 CHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKT-------GYIFVDFSNEE----EVKQALK-CNR 71 (91)
T ss_dssp CCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEE-------EEEEEECSSHH----HHHHHHH-SCS
T ss_pred ccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCc-------eEEEEEECCHH----HHHHHHH-hCC
Confidence 3478999999999999999999999 9999999999 667889 99999999999 8889988 876
No 318
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=1.2e-10 Score=85.16 Aligned_cols=62 Identities=16% Similarity=0.149 Sum_probs=54.1
Q ss_pred CCCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 21 ~~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
......+.||+.++|+++|+++|++||+| +++.+ .+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~-------g~afV~f~~~~----~A~~A~~~l~g 75 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSK-------GYAFIEFASFE----DAKEALNSCNK 75 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBC-------SEEEEECSSHH----HHHHHHHHTSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEe-------eEEEEEECCHH----HHHHHHHHhCC
Confidence 34578999999999999999999999977 66666 556888 99999999999 88899988886
No 319
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.06 E-value=1.2e-10 Score=89.34 Aligned_cols=62 Identities=8% Similarity=-0.017 Sum_probs=54.7
Q ss_pred CCCcccccccchhcHHHHH----HHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLV----DMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~----~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
+.++.+.||++++++++|+ ++|++||+|.+|.++. ++++| |||||+|.+.+ +|..|+..++|
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~r-------G~aFV~F~~~~----~A~~Ai~~lng 94 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNS-------GKAYIVFATQE----SAQAFVEAFQG 94 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSC-------CCEEEEESSHH----HHHHHHHHSTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcC-------CEEEEEECCHH----HHHHHHHHHCC
Confidence 4578999999999999876 6999999999998864 35778 99999999999 88899998887
No 320
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.06 E-value=8.8e-11 Score=93.90 Aligned_cols=64 Identities=8% Similarity=0.012 Sum_probs=59.9
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
..+.+.||+.++|+++|+++|++||+|.+|.|+.+..+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 73 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~-------g~afV~f~~~~----~A~~Ai~~l~g 136 (165)
T 1rk8_A 73 WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSK-------GYALVEYETHK----QALAAKEALNG 136 (165)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEE-------EEEEEEESSHH----HHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEe-------eEEEEEECCHH----HHHHHHHHhCC
Confidence 368999999999999999999999999999999999888999 99999999999 88888888876
No 321
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=9.5e-11 Score=86.26 Aligned_cols=57 Identities=12% Similarity=0.036 Sum_probs=51.1
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhcc
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFN 96 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~ 96 (264)
....++||++++|+++|+++|++||.|.+|+++++ | |||||+|.+.+ +|.+|+..++
T Consensus 16 ~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------k-------g~aFVef~~~~----~A~~Ai~~l~ 72 (101)
T 2cq1_A 16 RVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------K-------NQAFLELATEE----AAITMVNYYS 72 (101)
T ss_dssp SEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------T-------TEEEEEESSHH----HHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------C-------CEEEEEECCHH----HHHHHHHHhc
Confidence 46899999999999999999999999999999864 5 99999999999 7778877664
No 322
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.05 E-value=7.5e-11 Score=88.36 Aligned_cols=58 Identities=2% Similarity=-0.039 Sum_probs=51.1
Q ss_pred CCcccccccch-hcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESE-FTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~-~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.+..+.||+++ +|+++|+++|++||+|.+|+|++ +| |||||+|.+.+ +|..|+..+++
T Consensus 26 ~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~k-------g~aFVef~~~~----~A~~Ai~~l~~ 84 (112)
T 1x4f_A 26 RVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MK-------SQAFIEMETRE----DAMAMVDHCLK 84 (112)
T ss_dssp CEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TT-------TEEEEECSSHH----HHHHHHHHHHH
T ss_pred CEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CC-------CEEEEEECCHH----HHHHHHHHhcc
Confidence 36789999998 99999999999999999999974 35 99999999999 77788877654
No 323
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.04 E-value=2.4e-10 Score=83.30 Aligned_cols=59 Identities=10% Similarity=0.137 Sum_probs=53.2
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.......||+.++|+++|+++|++||+|.+|+++++ | |||||+|.+.+ +|.+|+..+++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------k-------g~afV~f~~~~----~a~~a~~~l~g 73 (99)
T 2cpj_A 15 RSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------K-------GFGFIRLETRT----LAEIAKVELDN 73 (99)
T ss_dssp TTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------T-------TEEEEECSSSH----HHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------C-------CEEEEEECCHH----HHHHHHHHhCC
Confidence 357899999999999999999999999999999854 4 99999999999 88888888876
No 324
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.61 E-value=2.2e-11 Score=91.59 Aligned_cols=65 Identities=11% Similarity=0.085 Sum_probs=59.0
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccE--------EEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHh
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAK--------EFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRN 93 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~--------i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~ 93 (264)
+....+.||++++|+++|+++|++||+|.+ |+++.++.+++++ |||||+|.+.+ +|.+|+.
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~-------g~afV~f~~~~----~A~~Ai~ 75 (116)
T 2lcw_A 7 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLK-------GEATVSFDDPP----SAKAAID 75 (116)
Confidence 357899999999999999999999999999 9999998888889 99999999999 7778888
Q ss_pred hccC
Q 024698 94 NFNQ 97 (264)
Q Consensus 94 ~~~~ 97 (264)
.+++
T Consensus 76 ~l~g 79 (116)
T 2lcw_A 76 WFDG 79 (116)
Confidence 7776
No 325
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=2.7e-10 Score=80.45 Aligned_cols=58 Identities=9% Similarity=-0.058 Sum_probs=52.7
Q ss_pred CCCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhc
Q 024698 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNF 95 (264)
Q Consensus 21 ~~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~ 95 (264)
.+......||+.++|+++|+++|++||+|.+|+++++ + |||||+|.+.+ +|.+|+..+
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------k-------g~afV~f~~~~----~A~~a~~~l 68 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------Q-------QCAFIQFATRQ----AAEVAAEKS 68 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------G-------TEEEEEESSHH----HHHHHHHTT
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------C-------CEEEEEECCHH----HHHHHHHHh
Confidence 3467899999999999999999999999999999863 4 99999999999 888998877
No 326
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.02 E-value=3.4e-11 Score=88.15 Aligned_cols=63 Identities=14% Similarity=0.044 Sum_probs=56.6
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
..+..+.||++++|+++|+++|++||+|.+ .++.+..+++++ |||||+|.+.+ +|.+|+. +++
T Consensus 17 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~-------g~afV~f~~~~----~a~~A~~-l~g 79 (101)
T 1fj7_A 17 PFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNR-------KFGYVDFESAE----DLEKALE-LTG 79 (101)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTT-------TEEEEEESSHH----HHHHHHH-GGG
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcC-------cEEEEEECCHH----HHHHHHh-cCC
Confidence 347899999999999999999999999998 778887777888 99999999999 8888887 776
No 327
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.02 E-value=1.6e-10 Score=86.50 Aligned_cols=61 Identities=10% Similarity=-0.072 Sum_probs=54.4
Q ss_pred CCCcccccccchhcHHHHHHHhhccC-CccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLN-PLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G-~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.....+.||++++|+++|+++|++|| +|..+.++.. +++ |||||+|.+.+ +|.+|+..+++
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~r-------GfaFV~F~~~e----~A~~Ai~~lng 89 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFD-------GTGALEFPSEE----ILVEALERLNN 89 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSS-------CCEEEEESSHH----HHHHHHHHTTT
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCC-------CEEEEEECCHH----HHHHHHHHcCC
Confidence 34789999999999999999999999 9999999753 355 99999999999 88899998887
No 328
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.02 E-value=1.8e-10 Score=82.62 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=47.5
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHH
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRR 90 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~ 90 (264)
..++...||++++|+++|+++|++||+|.+|+++++ +| |||||+|.+.+ +|.+
T Consensus 11 ~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----sr-------GfaFV~F~~~~----~A~~ 63 (89)
T 3d2w_A 11 GSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FR-------AFAFVTFADDK----VAQS 63 (89)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CC-------SEEEEEESCHH----HHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CC-------CEEEEEECCHH----HHHH
Confidence 357899999999999999999999999999999974 56 99999999999 6653
No 329
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.02 E-value=1.3e-10 Score=86.91 Aligned_cols=58 Identities=10% Similarity=0.158 Sum_probs=52.9
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
....+.||++++|+++|+++|++||+|.+|+++. ++ |||||+|.+.+ +|.+|+..+++
T Consensus 11 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~-------g~afV~f~~~~----~A~~Ai~~l~g 68 (111)
T 1whx_A 11 TVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GG-------ITAIVEFLEPL----EARKAFRHLAY 68 (111)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SS-------SCEEEEESCHH----HHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CC-------CEEEEEeCCHH----HHHHHHHHhCC
Confidence 4689999999999999999999999999999974 45 99999999999 88899988886
No 330
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.02 E-value=2.9e-10 Score=83.13 Aligned_cols=59 Identities=5% Similarity=-0.114 Sum_probs=53.2
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
+.+....||+.++|+++|+++|++||+|.+++++ +++ |||||+|.+.+ +|.+|+..+++
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~-------g~afV~f~~~~----~A~~Ai~~l~g 85 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEK-------GCCFIKYDTHE----QAAVCIVALAN 85 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTT-------TEEEEECSSHH----HHHHHHHHHTT
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCC-------CEEEEEECCHH----HHHHHHHHhCC
Confidence 4578999999999999999999999999999997 345 99999999999 88888888876
No 331
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.01 E-value=3.4e-10 Score=82.18 Aligned_cols=59 Identities=10% Similarity=0.013 Sum_probs=53.0
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.....+.||+.++|+++|+++|++||+|.+|.++++ + |||||+|.+.+ +|.+|+..+++
T Consensus 17 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~-------g~afV~f~~~~----~A~~A~~~l~g 75 (97)
T 1why_A 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------D-------SFAYIQYESLD----AAQAACAKMRG 75 (97)
T ss_dssp CSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------S-------CCEEEEESSHH----HHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------C-------CEEEEEECCHH----HHHHHHHHHCC
Confidence 357899999999999999999999999999999854 4 99999999999 88888888876
No 332
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.01 E-value=3e-10 Score=84.27 Aligned_cols=58 Identities=7% Similarity=-0.098 Sum_probs=53.6
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.....+.||++++|+++|+++|++||+|.+|.++.+ |||||+|.+.+ +|.+|+..|++
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--------------g~afV~f~~~~----~a~~Ai~~l~g 72 (108)
T 1x4c_A 15 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--------------GTGVVEFVRKE----DMTYAVRKLDN 72 (108)
T ss_dssp CCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--------------TEEEEEESSHH----HHHHHHHHSSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--------------CEEEEEECCHH----HHHHHHHHHCc
Confidence 357899999999999999999999999999999865 79999999999 88899998887
No 333
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.01 E-value=1.4e-10 Score=89.11 Aligned_cols=58 Identities=12% Similarity=0.154 Sum_probs=51.7
Q ss_pred CcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCce-EEeccCCcccccchHHHHHhhccC
Q 024698 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNF-ADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf-~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
...+.||.+.+|+++|+++|++||+|.+|+++.. .+ || |||+|.+.+ +|.+|+..++|
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~-------gfqAFVef~~~~----~A~~Ai~~LnG 88 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NN-------QFQALLQYADPV----SAQHAKLSLDG 88 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TT-------EEEEEEEESCHH----HHHHHHHHHTT
T ss_pred EEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CC-------CcEEEEEECCHH----HHHHHHHHcCC
Confidence 4569999999999999999999999999998753 24 88 999999999 88899998887
No 334
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.01 E-value=1.6e-10 Score=92.13 Aligned_cols=59 Identities=10% Similarity=0.068 Sum_probs=52.1
Q ss_pred CcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 24 NLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
...+.||++.+|+++|+++|++||+|.+|++.... ++ |||||+|.+.+ +|.+|+..++|
T Consensus 48 ~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~r-------gfAFVeF~d~~----~A~~Ai~~LnG 106 (164)
T 1sjr_A 48 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQ-------FQALLQYADPV----SAQHAKLSLDG 106 (164)
T ss_dssp EEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SC-------EEEEEEESCHH----HHHHHHHHSTT
T ss_pred EEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CC-------CEEEEEECCHH----HHHHHHHHhCC
Confidence 45689999999999999999999999999986432 35 99999999999 88899988887
No 335
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.01 E-value=2.8e-10 Score=84.63 Aligned_cols=58 Identities=14% Similarity=0.162 Sum_probs=52.8
Q ss_pred CCCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 21 ~~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.+......||+.++|+++|+++|++||+|.+|+++ + |||||+|.+.+ +|.+|+..+++
T Consensus 30 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------k-------g~afV~f~~~~----~A~~Ai~~l~g 87 (108)
T 2jvo_A 30 SNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------N-------GFAFVEFEEAE----SAAKAIEEVHG 87 (108)
T ss_dssp SCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------T-------TEEEEECSSHH----HHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------C-------CEEEEEECCHH----HHHHHHHHcCC
Confidence 34578999999999999999999999999999998 4 99999999999 88888888876
No 336
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.99 E-value=2.9e-10 Score=92.07 Aligned_cols=63 Identities=10% Similarity=0.098 Sum_probs=58.6
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
....+.||++++|+++|+++|++||+|.+|.++.+. +++++ |||||+|.+.+ +|.+|+..+++
T Consensus 89 ~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~k-------G~afV~F~~~~----~A~~Ai~~lng 151 (177)
T 2f3j_A 89 AKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSL-------GTADVHFERRA----DALKAMKQYKG 151 (177)
T ss_dssp EEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCS-------CCEEEEESCHH----HHHHHHHHSTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEe-------eEEEEEeCCHH----HHHHHHHHhCC
Confidence 367899999999999999999999999999999998 77888 99999999999 88899988886
No 337
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=3.2e-10 Score=82.36 Aligned_cols=60 Identities=7% Similarity=-0.029 Sum_probs=52.1
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.....+.||++++|+++|+++|++||+|. ++++.+ +++ |||||+|.+.+ +|.+|+..+++
T Consensus 19 ~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~-------g~afV~f~~~~----~a~~A~~~l~g 78 (97)
T 2e5j_A 19 AADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPR-------RRAFLHYPDSA----AAQQAVSCLQG 78 (97)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTT-------TEEEEECSSHH----HHHHHHHHHTT
T ss_pred CCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCC-------cEEEEEECCHH----HHHHHHHHhCC
Confidence 45789999999999999999999999996 666653 556 99999999999 88888888876
No 338
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=1.1e-09 Score=82.76 Aligned_cols=71 Identities=17% Similarity=0.097 Sum_probs=63.5
Q ss_pred CCCEEEEcCCCCC-CCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecC-HHHHHHHH-Hh--CCceeCCeeEEEee
Q 024698 115 VRRTVYVSDIDQN-ITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFAD-EHGARAAL-NL--GGTMLGYYPVRVLP 189 (264)
Q Consensus 115 ~~~~lfV~nLp~~-~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~-~e~a~~Al-~l--n~~~~~g~~i~V~~ 189 (264)
...-|||+||++. +++++|+++|++||+|..|.+..+.. .|||.|.+ .++|..|+ .+ ++..+.|..+++..
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK----EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC----EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 4567999999999 99999999999999999999988876 69999999 88999999 77 57888998888875
No 339
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=3.4e-10 Score=81.01 Aligned_cols=56 Identities=13% Similarity=0.084 Sum_probs=51.3
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.+....||+.++|+++|+++|++||+|.+|+++ | |||||+|.+.+ +|.+|+..+++
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~-------g~afV~f~~~~----~A~~A~~~l~g 64 (90)
T 2dnq_A 9 VKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------K-------NYGFVHIEDKT----AAEDAIRNLHH 64 (90)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------T-------TEEEEEESSHH----HHHHHHHHHTT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------C-------CEEEEEECCHH----HHHHHHHHhcC
Confidence 468999999999999999999999999999997 4 99999999999 88888888776
No 340
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.97 E-value=4.2e-10 Score=82.69 Aligned_cols=58 Identities=14% Similarity=0.078 Sum_probs=52.5
Q ss_pred CCCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 21 ~~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
......+.||+.++|+++|+++|++||+|.+|.++ + |||||+|.+.+ +|.+|+..+++
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~-------~~afV~f~~~~----~a~~A~~~l~g 67 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------K-------DYAFIHFDERD----GAVKAMEEMNG 67 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------S-------SCEEEEESSHH----HHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------C-------CEEEEEeCCHH----HHHHHHHHHCC
Confidence 44678999999999999999999999999999986 3 89999999999 88888888876
No 341
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=1.6e-10 Score=86.55 Aligned_cols=65 Identities=14% Similarity=-0.019 Sum_probs=54.4
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
+....+.||+.++|+++|+++|++||.|.++.+..+..+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 25 ~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~-------g~afV~f~~~~----~a~~Ai~~l~g 89 (115)
T 2cpx_A 25 NKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMR-------GQAFITFPNKE----IAWQALHLVNG 89 (115)
T ss_dssp CSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSC-------SEEEEECSSHH----HHHHHHHHSTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccc-------eEEEEEECCHH----HHHHHHHHhCC
Confidence 3478999999999999999999999999554444333366788 99999999999 88899888876
No 342
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.95 E-value=2.1e-10 Score=83.18 Aligned_cols=62 Identities=6% Similarity=0.061 Sum_probs=55.3
Q ss_pred CCCcccccccchhcHHHHH----HHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLV----DMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~----~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
+......||+.++|+++|+ ++|++||+|.+|.++. +++++ |||||+|.+.+ +|.+|+..+++
T Consensus 8 ~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~-------g~afV~f~~~~----~A~~A~~~l~g 73 (97)
T 1nu4_A 8 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMR-------GQAFVIFKEVS----SATNALRSMQG 73 (97)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHT-------TCEEEEESSHH----HHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcC-------cEEEEEeCCHH----HHHHHHHHhCC
Confidence 3578999999999999999 9999999999999984 34677 99999999999 88888888876
No 343
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=4.5e-10 Score=83.35 Aligned_cols=60 Identities=12% Similarity=0.006 Sum_probs=54.4
Q ss_pred CCCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 21 ~~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.+.+..+.||+.++|+++|+++|++||+|.+|+++++ + |||||+|.+.+ +|.+|+..+++
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~-------g~afV~f~~~~----~a~~A~~~l~g 83 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------K-------GYSFVRFSTHE----SAAHAIVSVNG 83 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------T-------TEEEEEESSHH----HHHHHHHHHTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------C-------CEEEEEECCHH----HHHHHHHHcCC
Confidence 3457899999999999999999999999999999876 4 99999999999 88888888876
No 344
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.95 E-value=6.1e-10 Score=82.47 Aligned_cols=59 Identities=12% Similarity=0.015 Sum_probs=51.7
Q ss_pred ccccchhcHHHHHHHhhccCCccEEEccccCCCC--CccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 28 KKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQH--TDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 28 ~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~--~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.+..++-.+++|++.|++||+|.+|+|+++..++ +++ ||+||+|.+.+ +|.+|+..|||
T Consensus 21 ~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~-------G~~fV~f~~~~----~A~~Ai~~lnG 81 (105)
T 3v4m_A 21 DDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGC-------GKIFVEFTSVF----DCQKAMQGLTG 81 (105)
T ss_dssp SHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTT-------TEEEEEESSHH----HHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCc-------EEEEEEECCHH----HHHHHHHHhCC
Confidence 3455777899999999999999999999988653 567 99999999999 88899999987
No 345
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=8.9e-10 Score=78.96 Aligned_cols=71 Identities=24% Similarity=0.281 Sum_probs=61.3
Q ss_pred CCCEEEEcCCCCC-----CCH----HHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhCCceeCCeeE
Q 024698 115 VRRTVYVSDIDQN-----ITE----ERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPV 185 (264)
Q Consensus 115 ~~~~lfV~nLp~~-----~te----~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i 185 (264)
...||+|.-++.. .-+ .+|.+.|++||+|..+++..|+ +||+|.+.++|.+||+|||..+.||.|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~------~fVtF~d~~sAl~AI~ldG~~v~Gr~L 87 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ------MLVTFADSHSALSVLDVDGMKVKGRAV 87 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE------EEEECSCSHHHHHHHHGGGSEETTEEE
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc------EEEEEcChHHHHHHHhcCCeeeCCeEE
Confidence 5678999988743 222 5688999999999999998885 999999999999999999999999999
Q ss_pred EEeeCC
Q 024698 186 RVLPSK 191 (264)
Q Consensus 186 ~V~~~~ 191 (264)
+|.+..
T Consensus 88 ~V~~k~ 93 (95)
T 1ufw_A 88 KISGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEeccC
Confidence 999743
No 346
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.94 E-value=9e-10 Score=80.56 Aligned_cols=63 Identities=11% Similarity=0.093 Sum_probs=55.9
Q ss_pred CCCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 21 ~~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.+....+.||+.++|+++|+++|++|+ +|+++.+..+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~-------g~afV~f~~~~----~A~~A~~~l~g 76 (102)
T 2fc8_A 14 PSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSK-------GFGFVDFNSEE----DAKAAKEAMED 76 (102)
T ss_dssp CCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEE-------EEEEEECSSHH----HHHHHHHHHTT
T ss_pred CCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcC-------cEEEEEECCHH----HHHHHHHHhCC
Confidence 345789999999999999999999874 78888888888889 99999999999 88888888877
No 347
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.94 E-value=1.2e-09 Score=81.13 Aligned_cols=56 Identities=11% Similarity=0.039 Sum_probs=51.1
Q ss_pred CCcccccccch-hcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESE-FTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~-~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
....+.||+.+ +|+++|+++|++||+|.+|.+ ++ |||||+|.+.+ +|.+|+..+++
T Consensus 28 ~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~-------g~afV~f~~~~----~A~~A~~~l~g 84 (110)
T 1wf1_A 28 SRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HK-------GYAFVQYSNER----HARAAVLGENG 84 (110)
T ss_dssp SEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ET-------TEEEEECSSSH----HHHHHHHHHTT
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eC-------CEEEEEECCHH----HHHHHHHHcCC
Confidence 46799999999 999999999999999999998 34 99999999999 88888888876
No 348
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.94 E-value=6e-10 Score=82.33 Aligned_cols=58 Identities=5% Similarity=-0.044 Sum_probs=49.0
Q ss_pred ccccchhcHHHHHHHh------------hccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhc
Q 024698 28 KKSESEFTVQKLVDMF------------TKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNF 95 (264)
Q Consensus 28 ~~~~~~~t~~~L~~~F------------~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~ 95 (264)
.+++.++|+++|++.| ++||+|.+|+++++.. ++++ |||||+|.+.+ +|.+|+..+
T Consensus 21 ~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~-------G~~fV~f~~~~----~A~~A~~~l 88 (104)
T 1jmt_A 21 DGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLV-------GNVYVKFRREE----DAEKAVIDL 88 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSE-------EEEEEEESCHH----HHHHHHHHH
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCcc-------EEEEEEECCHH----HHHHHHHHH
Confidence 4566777777666666 9999999999998876 4888 99999999999 888999988
Q ss_pred cC
Q 024698 96 NQ 97 (264)
Q Consensus 96 ~~ 97 (264)
||
T Consensus 89 ng 90 (104)
T 1jmt_A 89 NN 90 (104)
T ss_dssp TT
T ss_pred CC
Confidence 87
No 349
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.93 E-value=8.3e-10 Score=81.73 Aligned_cols=53 Identities=6% Similarity=-0.163 Sum_probs=47.5
Q ss_pred hcHHHHHHHhhccCCccEEEccccCCC-CCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 34 FTVQKLVDMFTKLNPLAKEFFPSYYHQ-HTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 34 ~t~~~L~~~F~~~G~i~~i~i~~~~~~-~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
-++++|+++|++||+|.+|++++++.+ ++++ |||||+|.+.+ +|.+|+..|||
T Consensus 25 d~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~-------G~~FV~f~~~~----~A~~Ai~~lnG 78 (105)
T 2pe8_A 25 DLEVETKEECEKYGKVGKCVIFEIPGAPDDEA-------VRIFLEFERVE----SAIKAVVDLNG 78 (105)
T ss_dssp -CHHHHHHHGGGGSCEEEEEEEECSSCCTTTS-------EEEEEEESSHH----HHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCEEEEEEecCCCCCCCCc-------EEEEEEECCHH----HHHHHHHHHCC
Confidence 378999999999999999999998754 5778 99999999999 88899999987
No 350
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.93 E-value=6.6e-10 Score=102.23 Aligned_cols=64 Identities=11% Similarity=0.060 Sum_probs=60.3
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.++++.||++++|+++|+++|++||+|..|.|+.+..+++++ |||||+|.+.+ +|.+|+..|++
T Consensus 103 ~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~k-------G~aFV~F~~~e----~A~~Ai~~lng 166 (437)
T 3pgw_S 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPR-------GYAFIEYEHER----DMHSAYKHADG 166 (437)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCcc-------ceEEEeeccHH----HHHHHHHHcCC
Confidence 478999999999999999999999999999999998888999 99999999999 88899988887
No 351
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=7.4e-10 Score=79.23 Aligned_cols=58 Identities=10% Similarity=0.100 Sum_probs=52.6
Q ss_pred CCCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 21 ~~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
......+.||+.++|+++|+++|++||+|.+|+++ + +||||+|.+.+ +|.+|+..+++
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~-------~~afV~f~~~~----~a~~A~~~l~g 65 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------K-------DYAFVHMEKEA----DAKAAIAQLNG 65 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------S-------SCEEEEESCHH----HHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------C-------CEEEEEECCHH----HHHHHHHHhCC
Confidence 34578999999999999999999999999999987 2 79999999999 88888888876
No 352
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.91 E-value=7.5e-10 Score=80.27 Aligned_cols=56 Identities=11% Similarity=0.044 Sum_probs=51.2
Q ss_pred CCcccccccc-hhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSES-EFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~-~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.+..+.||++ ++|+++|+++|++||+|.+|+++ + |||||+|.+.+ +|.+|+..+++
T Consensus 11 ~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~-------g~afV~f~~~~----~A~~A~~~l~g 67 (96)
T 2kvi_A 11 SRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------N-------AFGFIQFDNPQ----SVRDAIECESQ 67 (96)
T ss_dssp EEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------T-------TEEEEEESCHH----HHHHHHHHHTC
T ss_pred CEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------C-------CEEEEEECCHH----HHHHHHHHcCC
Confidence 4689999998 99999999999999999999984 4 99999999999 88888888876
No 353
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.90 E-value=3.7e-10 Score=88.00 Aligned_cols=65 Identities=11% Similarity=-0.012 Sum_probs=54.7
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEE--Ecccc---CCCCCccccccCCCceEEeccCCcccccchHHHHHhhcc
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKE--FFPSY---YHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFN 96 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i--~i~~~---~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~ 96 (264)
+.+..+.||++++|+++|+++|++||.|.++ +++.+ ..+++++ |||||+|.+.+ +|.+|+..++
T Consensus 45 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~-------g~afV~f~~~~----~A~~Ai~~ln 113 (143)
T 3egn_A 45 NCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMK-------GQAFIGLPNEK----AAAKALKEAN 113 (143)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTE-------EEEEEECSSHH----HHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcc-------cEEEEEeCCHH----HHHHHHHHhC
Confidence 4578999999999999999999999999876 22332 3456888 99999999999 8888988888
Q ss_pred C
Q 024698 97 Q 97 (264)
Q Consensus 97 ~ 97 (264)
+
T Consensus 114 g 114 (143)
T 3egn_A 114 G 114 (143)
T ss_dssp T
T ss_pred C
Confidence 7
No 354
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=1.4e-09 Score=78.69 Aligned_cols=61 Identities=8% Similarity=0.065 Sum_probs=54.7
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEE-EccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKE-FFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i-~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
..+..+.||++++|+++|+++|++||+|.+| .++.++.+ |.|||+|.+.+ +|.+|+..+++
T Consensus 15 ~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~-----------~~afV~f~~~~----~a~~Ai~~l~g 76 (96)
T 2e44_A 15 IRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET-----------AVVNVTYSSKD----QARQALDKLNG 76 (96)
T ss_dssp CCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS-----------EEEEEEESSHH----HHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC-----------CEEEEEECCHH----HHHHHHHHhCC
Confidence 4578999999999999999999999999999 48887766 67999999999 88888888876
No 355
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=7e-10 Score=79.02 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=47.7
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHH
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRR 91 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a 91 (264)
+.+..+.||+.++|+++|+++|++||+|.+|+++.+ +| |||||+|.+.+ +|.++
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~-------g~afV~f~~~~----~a~~~ 58 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FR-------AFAFVTFADDQ----IAQSL 58 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CC-------SCCEEECSCHH----HHHHT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CC-------CEEEEEECCHH----HHHHH
Confidence 357899999999999999999999999999999865 45 99999999999 66543
No 356
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.90 E-value=6.5e-10 Score=83.53 Aligned_cols=58 Identities=7% Similarity=-0.098 Sum_probs=52.5
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.....+.||++++|+++|+++|++||+|.+|.|+.+ |||||+|.+.+ +|.+|+..|++
T Consensus 16 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--------------g~afV~f~~~~----~a~~Ai~~l~g 73 (115)
T 3beg_B 16 ENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--------------GTGVVEFVRKE----DMTYAVRKLDN 73 (115)
T ss_dssp -CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--------------SEEEEEESSHH----HHHHHHHHHTT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--------------CEEEEEECCHH----HHHHHHHHhCC
Confidence 357899999999999999999999999999999764 89999999999 88888888876
No 357
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.90 E-value=1.1e-09 Score=78.73 Aligned_cols=57 Identities=14% Similarity=0.151 Sum_probs=51.7
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.......||+.++|+++|+++|++||+|.+|+++ + +||||+|.+.+ +|.+|+..+++
T Consensus 10 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~-------~~afV~f~~~~----~a~~A~~~l~g 66 (92)
T 2dgt_A 10 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------K-------DYAFVHMERAE----DAVEAIRGLDN 66 (92)
T ss_dssp SEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------S-------SEEEEEESCHH----HHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------C-------CEEEEEECCHH----HHHHHHHHhCC
Confidence 3478999999999999999999999999999987 2 79999999999 88888888876
No 358
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=9.6e-10 Score=79.07 Aligned_cols=58 Identities=16% Similarity=0.103 Sum_probs=49.7
Q ss_pred CCCcccccccchhcHHHHHHHhhccCC-ccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNP-LAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~-i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
..+....||+.++|+++|+++|++||+ |..+.+. ++ |||||+|.+.+ +|.+|+..+++
T Consensus 8 ~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~-------g~afV~f~~~~----~A~~A~~~l~g 66 (93)
T 2cqh_A 8 MNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KS-------GYAFVDYPDQN----WAIRAIETLSG 66 (93)
T ss_dssp CCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ET-------TEEEECCSCHH----HHHHHHHHHTT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CC-------CEEEEEECCHH----HHHHHHHHccC
Confidence 457899999999999999999999999 6666652 35 99999999999 77788887775
No 359
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.89 E-value=1.3e-09 Score=79.27 Aligned_cols=57 Identities=11% Similarity=0.057 Sum_probs=51.8
Q ss_pred CCCcccccccc-hhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSES-EFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~-~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
+......||+. ++|+++|+++|++||+|.+|+++ + |||||+|.+.+ +|.+|+..+++
T Consensus 22 ~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~-------g~afV~f~~~~----~A~~Ai~~l~g 79 (97)
T 2xnq_A 22 KSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------N-------AFGFIQFDNPQ----SVRDAIEXESQ 79 (97)
T ss_dssp TCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------S-------SEEEEEESSHH----HHHHHHHHHTT
T ss_pred CCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------C-------CEEEEEECCHH----HHHHHHHHcCC
Confidence 45789999998 99999999999999999999984 4 99999999999 88888888876
No 360
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.88 E-value=1.2e-09 Score=83.27 Aligned_cols=56 Identities=13% Similarity=0.130 Sum_probs=49.5
Q ss_pred cccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCce-EEeccCCcccccchHHHHHhhccC
Q 024698 25 LETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNF-ADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 25 ~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf-~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
..+.||++.+|+++|+++|++||+|.+|++... . || |||+|.+.+ +|..|+..|+|
T Consensus 28 l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~-------Gf~aFVef~~~~----~A~~A~~~LnG 84 (124)
T 2e5i_A 28 LSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------N-------GIQAMVEFESVL----CAQKAKAALNG 84 (124)
T ss_dssp EEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------S-------SEEEEEEESSHH----HHHHHHHHHTT
T ss_pred EEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------C-------CCEEEEEECCHH----HHHHHHHHhCC
Confidence 357899999999999999999999999998641 2 86 999999999 88888888887
No 361
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.87 E-value=1.3e-09 Score=89.54 Aligned_cols=62 Identities=6% Similarity=-0.053 Sum_probs=55.6
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhcc
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFN 96 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~ 96 (264)
.+..+.||++++|+++|+++|++||+|.+|+++++.. ++++ |||||+|.+.+ +|.+|+..++
T Consensus 110 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~k-------G~aFVeF~~~e----~A~~A~~~~~ 171 (193)
T 2voo_A 110 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFK-------GSIFVVFDSIE----SAKKFVETPG 171 (193)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEE-------EEEEEEESSHH----HHHHHHHCTT
T ss_pred CEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcc-------cEEEEEECCHH----HHHHHHHhCC
Confidence 4678999999999999999999999999999999875 5888 99999999999 7778886654
No 362
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=2.2e-09 Score=77.89 Aligned_cols=57 Identities=14% Similarity=0.084 Sum_probs=50.0
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
+.+..+.|+ ++|+++|+++|++||+|.+|.+. +++ |||||+|.+.+ +|.+|+..+++
T Consensus 15 ~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~-------g~afV~f~~~~----~a~~Ai~~l~g 71 (97)
T 1x5p_A 15 GNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPR-------NCAFVTYEKME----SADQAVAELNG 71 (97)
T ss_dssp CSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTT-------TEEEEEESSHH----HHHHHHHHTTT
T ss_pred CCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCC-------CEEEEEECCHH----HHHHHHHHhCC
Confidence 346788885 89999999999999999999984 455 99999999999 88899988886
No 363
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=1.8e-09 Score=79.15 Aligned_cols=51 Identities=8% Similarity=0.021 Sum_probs=43.9
Q ss_pred cchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 31 ESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 31 ~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
+.++|+++|+++|++||+|.+|+|+ +++| |||||+|.+.+ +|..|+..+++
T Consensus 26 ~~~~te~~L~~~F~~~G~V~~v~i~-----~~~r-------GfaFVeF~~~~----~A~~Ai~~~~~ 76 (100)
T 2d9o_A 26 KGGYSKDVLLRLLQKYGEVLNLVLS-----SKKP-------GTAVVEFATVK----AAELAVQNEVG 76 (100)
T ss_dssp CCSCCHHHHHHHHHTTSCEEEEEEE-----SSSS-------SEEEEEESCHH----HHHHHHHTCCB
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEEc-----cCCC-------CEEEEEECCHH----HHHHHHHhcCC
Confidence 3578999999999999999999998 2567 99999999999 77788776544
No 364
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=2.4e-09 Score=77.16 Aligned_cols=58 Identities=12% Similarity=0.016 Sum_probs=49.8
Q ss_pred CCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.+..+.||++++|+++|+++|++||+|.+| +.+..++ .||||+|.+.+ +|.+|+. +++
T Consensus 9 ~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g----------~~afV~f~~~~----~a~~ai~-l~g 66 (94)
T 2e5g_A 9 RSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKG----------VFAIVEMGDVG----AREAVLS-QSQ 66 (94)
T ss_dssp CEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSC----------CEEEEEESSHH----HHHHHHT-CSC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCC----------cEEEEEECCHH----HHHHHHh-cCC
Confidence 478999999999999999999999999987 4454431 29999999999 8889998 876
No 365
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.85 E-value=5.7e-10 Score=80.71 Aligned_cols=60 Identities=12% Similarity=0.073 Sum_probs=52.2
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.......||+.++|+++|+++|++||.|..+ ..+++++ |||||+|.+.+ +|.+|+..+++
T Consensus 16 ~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~-------g~afV~f~~~~----~a~~A~~~l~g 75 (96)
T 1fjc_A 16 ARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSK-------GIAYIEFKSEA----DAEKNLEEKQG 75 (96)
T ss_dssp GGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEE-------EEEEEEESSHH----HHHHHHHHTTE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcc-------eEEEEEECCHH----HHHHHHHHhCC
Confidence 3478999999999999999999999988766 3445778 99999999999 88889888876
No 366
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.85 E-value=2.3e-09 Score=76.40 Aligned_cols=58 Identities=12% Similarity=0.118 Sum_probs=52.1
Q ss_pred CCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
..+....||++++|+++|+++|++| +|.+++++ +++ |||||+|.+.+ +|.+|+..+++
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~-------g~afV~f~~~~----~a~~Ai~~l~g 62 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNK-------RTAFVTLLNGE----QAQNAIQMFHQ 62 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGG-------TEEEECCSCHH----HHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCC-------cEEEEEECCHH----HHHHHHHHhCC
Confidence 3578999999999999999999999 99999984 456 99999999999 88888888876
No 367
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.83 E-value=3.5e-09 Score=77.04 Aligned_cols=57 Identities=7% Similarity=-0.004 Sum_probs=51.3
Q ss_pred CCCcccccccchhcHHHHHHHhhcc--CCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKKSESEFTVQKLVDMFTKL--NPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~~~~~~t~~~L~~~F~~~--G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.....+.||+.++|+++|+++|++| |.|.+|+++ + |||||+|.+.+ +|.+|+..+++
T Consensus 15 ~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~-------g~afV~f~~~~----~A~~A~~~l~g 73 (99)
T 2cpd_A 15 VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------R-------DYAFVHFSNRE----DAVEAMKALNG 73 (99)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------S-------SEEEEEESSHH----HHHHHHHHHSS
T ss_pred cCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------C-------CeEEEEeCCHH----HHHHHHHHhCC
Confidence 3578999999999999999999999 899988764 4 99999999999 88899888886
No 368
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.83 E-value=2.2e-09 Score=75.96 Aligned_cols=57 Identities=18% Similarity=0.161 Sum_probs=51.5
Q ss_pred CCcccccccchhcHHHHHHHhhcc----C-------CccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHH
Q 024698 23 NNLETKKSESEFTVQKLVDMFTKL----N-------PLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRR 91 (264)
Q Consensus 23 ~~~~~~~~~~~~t~~~L~~~F~~~----G-------~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a 91 (264)
.+....||++++|+++|+++|++| | +|.+++++++ + |||||+|.+.+ +|.+|
T Consensus 7 ~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------k-------g~afV~f~~~~----~a~~A 69 (87)
T 2hzc_A 7 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------K-------NFAFLEFRSVD----ETTQA 69 (87)
T ss_dssp GEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------S-------SEEEEEESSHH----HHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------C-------cEEEEEcCCHH----HHHHH
Confidence 467899999999999999999999 8 9999998754 4 99999999999 88899
Q ss_pred HhhccC
Q 024698 92 RNNFNQ 97 (264)
Q Consensus 92 ~~~~~~ 97 (264)
+ .+++
T Consensus 70 ~-~l~g 74 (87)
T 2hzc_A 70 M-AFDG 74 (87)
T ss_dssp G-GGTT
T ss_pred H-hcCC
Confidence 8 8876
No 369
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.79 E-value=4.1e-09 Score=79.93 Aligned_cols=58 Identities=16% Similarity=0.101 Sum_probs=50.2
Q ss_pred CCCCcccccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 21 KNNNLETKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 21 ~~~~~~~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.+.+..+.|+ ++|+++|+++|++||+|.+|.++ +++ |||||+|.+.+ +|.+|+..+++
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~k-------g~aFV~f~~~~----~A~~Ai~~lng 95 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPR-------NCAFVTYEKME----SADQAVAELNG 95 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTT-------TEEEEECSSHH----HHHHHHHHHTT
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCC-------CEEEEEECCHH----HHHHHHHHhCC
Confidence 3456788885 79999999999999999999985 455 99999999999 88888888876
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.73 E-value=8.5e-09 Score=91.66 Aligned_cols=59 Identities=10% Similarity=0.195 Sum_probs=53.2
Q ss_pred CCCccccc--ccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 22 NNNLETKK--SESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 22 ~~~~~~~~--~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.+++.+.| +.+.+|+++|+++|++||+|.+|++++ +| |||||+|.+.+ +|.+|+..+||
T Consensus 18 s~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~k-------gfaFV~f~~~~----~A~~Ai~~lnG 78 (345)
T 3tht_A 18 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NK-------PYSFARYRTTE----ESKRAYVTLNG 78 (345)
T ss_dssp CSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TC-------SEEEEEESSHH----HHHHHHHHTTT
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CC-------CEEEEEECCHH----HHHHHHHHhCC
Confidence 35788988 689999999999999999999998874 35 99999999999 88899999997
No 371
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.73 E-value=5.2e-09 Score=79.07 Aligned_cols=52 Identities=6% Similarity=-0.093 Sum_probs=46.8
Q ss_pred cHHHHHHHhhccCCccEEEccccCC----CCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 35 TVQKLVDMFTKLNPLAKEFFPSYYH----QHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 35 t~~~L~~~F~~~G~i~~i~i~~~~~----~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.++||++.|++||+|.+|+|+++.. +++++ ||+||+|.+.+ +|.+|+..|||
T Consensus 38 leedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~-------G~~FV~F~~~e----~A~~Ai~~LnG 93 (118)
T 3ue2_A 38 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEII-------VKIFVEFSIAS----ETHKAIQALNG 93 (118)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEE-------EEEEEEESSHH----HHHHHHHHHTT
T ss_pred HHHHHHHHHhccCCEeEEEEeecCCCcccCCcce-------EEEEEEECCHH----HHHHHHHHHCC
Confidence 4789999999999999999999875 35678 99999999999 88899999987
No 372
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.72 E-value=2e-08 Score=83.81 Aligned_cols=64 Identities=17% Similarity=0.167 Sum_probs=56.7
Q ss_pred CCCHHHHHHHhhcCCCeeEEEEecCCC------CCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeC
Q 024698 127 NITEERLAGLFSSCGQVVDCRVCGDPH------SVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 127 ~~te~~L~~~F~~~G~i~~v~i~~d~~------~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~ 190 (264)
.-.+++|++.|++||+|.++.++++.. .++|++||+|.+.++|.+|+ .|||..+.||.|.|..+
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~ 210 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVY 210 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEc
Confidence 345688999999999999999985543 36799999999999999999 89999999999999974
No 373
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.71 E-value=9.5e-09 Score=86.90 Aligned_cols=62 Identities=11% Similarity=0.139 Sum_probs=54.2
Q ss_pred CCCCcccccccchh---------cHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHH
Q 024698 21 KNNNLETKKSESEF---------TVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRR 91 (264)
Q Consensus 21 ~~~~~~~~~~~~~~---------t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a 91 (264)
.+.++++.||+.++ |+++|+++|++||+|.+|+|+. +| |||||+|.+.+ +|..|
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~k-------G~AFV~F~~~~----~Ae~A 195 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SK-------NCGFVKFKYQA----NAEFA 195 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GG-------TEEEEEESSHH----HHHHH
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CC-------CEEEEEeCCHH----HHHHH
Confidence 44588999999988 8999999999999999999985 35 99999999999 88888
Q ss_pred HhhccCCC
Q 024698 92 RNNFNQGR 99 (264)
Q Consensus 92 ~~~~~~g~ 99 (264)
+..|++..
T Consensus 196 ~~am~g~~ 203 (240)
T 3u1l_A 196 KEAMSNQT 203 (240)
T ss_dssp HHHHTTCC
T ss_pred HHHhCCCE
Confidence 88888633
No 374
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.61 E-value=3.4e-08 Score=74.10 Aligned_cols=51 Identities=6% Similarity=-0.051 Sum_probs=45.4
Q ss_pred chhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 32 SEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 32 ~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
++-.+++|++.|++||+|.+|.++++. .+ ||+||+|.+.+ +|.+|+..|||
T Consensus 27 ~~el~edl~~~f~kfG~V~~v~i~~~~----~~-------G~~fV~f~~~e----~A~~Ai~~lnG 77 (114)
T 3s6e_A 27 DTEIKDDVIEECNKHGGVIHIYVDKNS----AQ-------GNVYVKCPSIA----AAIAAVNALHG 77 (114)
T ss_dssp HHHHHHHHHHHHTTTTCCSEEEECTTC----TT-------CCEEEECSSHH----HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccCCEEEEEEecCC----Cc-------EEEEEEECCHH----HHHHHHHHhCC
Confidence 566788999999999999999998764 35 99999999999 88899999987
No 375
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.61 E-value=4.1e-08 Score=73.14 Aligned_cols=49 Identities=8% Similarity=-0.042 Sum_probs=42.0
Q ss_pred hcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 34 FTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 34 ~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.++++|+++|++||+|.+|.| .+. .++ |||||+|.+.+ +|.+|+..+++
T Consensus 38 ~~e~~l~~~f~~~G~v~~v~i-~~~---~~~-------G~afV~f~~~~----~A~~Ai~~lng 86 (112)
T 2dit_A 38 EIREDLRVECSKFGQIRKLLL-FDR---HPD-------GVASVSFRDPE----EADYCIQTLDG 86 (112)
T ss_dssp HHHHHHHHHGGGTSCCSEEEE-ETT---CTT-------CEEEEECSCHH----HHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCCEeEEEE-ecC---CCC-------EEEEEEECCHH----HHHHHHHHcCC
Confidence 357999999999999999977 333 256 99999999999 88899999887
No 376
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.58 E-value=3.7e-07 Score=66.79 Aligned_cols=72 Identities=13% Similarity=0.138 Sum_probs=66.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHHhhcC-----CCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEE
Q 024698 114 SVRRTVYVSDIDQNITEERLAGLFSSC-----GQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRV 187 (264)
Q Consensus 114 ~~~~~lfV~nLp~~~te~~L~~~F~~~-----G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V 187 (264)
...++|-+-|||..+++..|+.+.+++ |.|..+.+..|.+ -|+|+|.+...|-+|. .|+|..|.||.|+|
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~----GAivef~d~~~AgKasLaL~G~ef~gr~Lr~ 94 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN----GAIIIFRDSKFAAKMLMILNGSQFQGKVIRS 94 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT----EEEEECSCHHHHHHHHHHHSSEEETTEEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC----ceEEEEccchhhHHHHhhcCCeeecCeEEEe
Confidence 357889999999999999999999999 9999999988876 7999999999999998 99999999999999
Q ss_pred ee
Q 024698 188 LP 189 (264)
Q Consensus 188 ~~ 189 (264)
.-
T Consensus 95 gT 96 (117)
T 2l9w_A 95 GT 96 (117)
T ss_dssp EC
T ss_pred cC
Confidence 74
No 377
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.57 E-value=4.7e-08 Score=70.29 Aligned_cols=52 Identities=8% Similarity=-0.095 Sum_probs=45.8
Q ss_pred cccccccchhcHHH----HHHHhhcc-CCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 25 LETKKSESEFTVQK----LVDMFTKL-NPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 25 ~~~~~~~~~~t~~~----L~~~F~~~-G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
..+.||++++++++ |+++|++| |+|.+| + . |||||.|.+.+ +|.+|++.|++
T Consensus 12 lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------t---g-------G~AfV~F~~~e----sA~~A~~~l~G 68 (96)
T 2diu_A 12 LYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------T---G-------CSAILRFINQD----SAERAQKRMEN 68 (96)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------C---T-------TCEEEEESSHH----HHHHHHHHHTT
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------e---c-------CEEEEEECCHH----HHHHHHHHhcC
Confidence 67999999999988 55899999 599988 1 2 99999999999 88899988887
No 378
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=1.5e-05 Score=57.77 Aligned_cols=88 Identities=17% Similarity=0.200 Sum_probs=72.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhc-----CCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhCCceeCCeeEEEee
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSS-----CGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGYYPVRVLP 189 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~-----~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al~ln~~~~~g~~i~V~~ 189 (264)
..++|.|.|||+.+.++.|+-+|+. =|+|..+.... +-|+|+|.+.+.|++.|+...+.+.+.+|.|.+
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF~d~~va~rVL~k~~H~L~~~~LsV~P 80 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTFREPADAERVLAQADHELHGAQLSLRP 80 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEESSHHHHHHHHTCSCCBSSSSBCEEEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEEcChHHHHHHhcCCcceecCeEEEEEc
Confidence 4678999999999999999999986 25888887744 469999999999999997777889999999987
Q ss_pred CCCCCCCCCCCCCCCChhhhcCCCCeEEEcCCCCCCC
Q 024698 190 SKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVP 226 (264)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~nL~~~~t 226 (264)
. .++ ..+++++.+|++.++
T Consensus 81 ~-----------~~~-------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 81 A-----------PPR-------APARLLLQGLPPGTS 99 (104)
T ss_dssp C-----------CCC-------CCCCCCCCSCCCCCC
T ss_pred C-----------CCC-------CcceEeeecCCCCCC
Confidence 3 222 356788888888764
No 379
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.19 E-value=1.8e-06 Score=65.04 Aligned_cols=64 Identities=13% Similarity=-0.014 Sum_probs=52.9
Q ss_pred Ccccccccch-hcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCC-cccccchHHHHHhhccCCCcC
Q 024698 24 NLETKKSESE-FTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQS-AIDNFNNNRRRRNNFNQGRKR 101 (264)
Q Consensus 24 ~~~~~~~~~~-~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~-~~~a~~~A~~a~~~~~~g~~~ 101 (264)
-....|++++ +|.++|+++|++||+|..|.+.++. -.|||.|.+ ++ +|.+++..++.|+..
T Consensus 20 il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~-------------~tgfVrf~~~~~----~A~~av~~ln~~~~~ 82 (121)
T 1owx_A 20 LLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA-------------KEGIILFKEKAK----EALGKAKDANNGNLQ 82 (121)
T ss_dssp EEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC-------------SEEEEEESSCHH----HHHHHHHHTTTSCBC
T ss_pred EEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-------------CEEEEEECCChH----HHHHHHHHhhcCCcE
Confidence 3467789999 9999999999999999999998765 459999999 67 777888888766654
Q ss_pred CCC
Q 024698 102 LSG 104 (264)
Q Consensus 102 ~~~ 104 (264)
+.+
T Consensus 83 i~g 85 (121)
T 1owx_A 83 LRN 85 (121)
T ss_dssp TTS
T ss_pred EeC
Confidence 433
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.12 E-value=2.3e-06 Score=71.13 Aligned_cols=54 Identities=6% Similarity=-0.112 Sum_probs=47.0
Q ss_pred hhcHHHHHHHhhccCCccEEEccccCCC----CCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 33 EFTVQKLVDMFTKLNPLAKEFFPSYYHQ----HTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 33 ~~t~~~L~~~F~~~G~i~~i~i~~~~~~----~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
+-.+++|++.|++||+|.++.++++..+ ++++ ||+||+|.+.+ +|.+|+..++|
T Consensus 140 ~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~-------G~~fv~f~~~~----~a~~a~~~l~g 197 (222)
T 3dxb_A 140 DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEII-------VKIFVEFSIAS----ETHKAIQALNG 197 (222)
T ss_dssp TTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEE-------EEEEEEESSHH----HHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCce-------eEEEEEECCHH----HHHHHHHHhcC
Confidence 3467899999999999999999966543 4788 99999999999 88899999987
No 381
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.66 E-value=6.1e-05 Score=53.48 Aligned_cols=42 Identities=10% Similarity=-0.008 Sum_probs=37.0
Q ss_pred HHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 36 ~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
-.+|.+.|++||+|..++++.+ .+||+|.+.+ .|.+|++ ++|
T Consensus 29 ~~~L~~~F~~~G~Vi~vr~~~d---------------~~fVtF~d~~----sAlaAi~-mnG 70 (91)
T 2dnr_A 29 IDELLQQFASFGEVILIRFVED---------------KMWVTFLEGS----SALNVLS-LNG 70 (91)
T ss_dssp HHHHHHHHHTTCCEEEEEECSS---------------SEEEEESSHH----HHHHGGG-GTT
T ss_pred HHHHHHHHHhCCCeEEEEEecC---------------CEEEEECChH----HHHHHHh-cCC
Confidence 3569999999999999999874 3899999999 8889998 887
No 382
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.46 E-value=0.00031 Score=50.95 Aligned_cols=73 Identities=11% Similarity=0.116 Sum_probs=60.5
Q ss_pred CCCEEEEcCCCCCC-CH----HHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEe
Q 024698 115 VRRTVYVSDIDQNI-TE----ERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVL 188 (264)
Q Consensus 115 ~~~~lfV~nLp~~~-te----~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~ 188 (264)
...+|+|.||+..+ +. +.++++|..|+++......+.= +-..|.|.++++|.+|- +|++..+.|++|+|.
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF----RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF----KRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT----TEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc----eEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 45789999999754 22 5678999999999887665432 35789999999999999 899999999999999
Q ss_pred eCC
Q 024698 189 PSK 191 (264)
Q Consensus 189 ~~~ 191 (264)
...
T Consensus 80 Fgq 82 (104)
T 1wey_A 80 FAQ 82 (104)
T ss_dssp CCC
T ss_pred ecC
Confidence 865
No 383
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.24 E-value=0.0016 Score=46.28 Aligned_cols=66 Identities=12% Similarity=0.162 Sum_probs=54.2
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCC----CceEEEEEecCHHHHHHHH-HhCCceeCC
Q 024698 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS----VLRFAFVEFADEHGARAAL-NLGGTMLGY 182 (264)
Q Consensus 117 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~----~~g~afV~f~~~e~a~~Al-~ln~~~~~g 182 (264)
.+|.|++||+++|++++.+.++...++.....+..+.+ .-.-|||.|.+.+++..-. .++|+.+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 36889999999999999999999988776666544432 2368999999999998888 799999843
No 384
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.17 E-value=0.00029 Score=50.28 Aligned_cols=41 Identities=2% Similarity=-0.117 Sum_probs=36.7
Q ss_pred HHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 37 QKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 37 ~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.+|.+.|++||+|..++++.++ +||+|.+.+ .|.+|++ +++
T Consensus 39 ~~L~~~F~~~G~Vilvr~v~d~---------------~fVtF~d~~----sAl~AI~-ldG 79 (95)
T 1ufw_A 39 TELMQTLGSYGTIVLVRINQGQ---------------MLVTFADSH----SALSVLD-VDG 79 (95)
T ss_dssp HHHHHHHHHHSCCSEEEEETTE---------------EEEECSCSH----HHHHHHH-GGG
T ss_pred HHHHHHHHHCCCEEEEEEecCc---------------EEEEEcChH----HHHHHHh-cCC
Confidence 5699999999999999998763 999999999 8889997 876
No 385
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.11 E-value=0.0033 Score=46.75 Aligned_cols=71 Identities=18% Similarity=0.240 Sum_probs=57.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhCCceeCC-eeEEEeeC
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTMLGY-YPVRVLPS 190 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al~ln~~~~~g-~~i~V~~~ 190 (264)
..+.|-|-+.|+.. -..+..+|++||+|.+.... ....+-.|.|.++.+|++||..||..+.| -.|-|.+.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----NTGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----SSSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----CCCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEEEC
Confidence 35668889999885 45677789999999988762 12348999999999999999999999985 66777764
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.03 E-value=0.0018 Score=46.31 Aligned_cols=53 Identities=23% Similarity=0.313 Sum_probs=44.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN 174 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al~ 174 (264)
...-+++ +.|+++...||.++|+.||.| .|+++.|. -|||.|.+++.|..|+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-----sAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-----SAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-----EEEEECSCHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-----eEEEEecCHHHHHHHHH
Confidence 3344666 999999999999999999955 56666664 59999999999999994
No 387
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.38 E-value=0.0039 Score=47.08 Aligned_cols=73 Identities=16% Similarity=0.272 Sum_probs=53.9
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeE-EEEec----------C-CC----CCceEEEEEecCHHHHHHHHHhCCcee
Q 024698 117 RTVYVSDIDQNITEERLAGLFSSCGQVVD-CRVCG----------D-PH----SVLRFAFVEFADEHGARAALNLGGTML 180 (264)
Q Consensus 117 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~-v~i~~----------d-~~----~~~g~afV~f~~~e~a~~Al~ln~~~~ 180 (264)
..|-|-+.|+..+.. +-+.|++||.|.+ ....+ + +. +...+-.|+|+++.+|.+||..||..+
T Consensus 8 ~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 8 LAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEE
T ss_pred eEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEe
Confidence 346777888776655 5567999999865 21111 0 00 123488999999999999999999999
Q ss_pred CCeeEEEeeC
Q 024698 181 GYYPVRVLPS 190 (264)
Q Consensus 181 ~g~~i~V~~~ 190 (264)
.|.-|-|.+.
T Consensus 87 ~G~mIGV~Py 96 (132)
T 3p3d_A 87 NGVLLGVIPY 96 (132)
T ss_dssp TTEECEEEEC
T ss_pred CcEEEEEEEC
Confidence 9998888874
No 388
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.25 E-value=0.0024 Score=58.57 Aligned_cols=62 Identities=21% Similarity=0.253 Sum_probs=45.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHHhCCcee
Q 024698 115 VRRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALNLGGTML 180 (264)
Q Consensus 115 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al~ln~~~~ 180 (264)
..|+|+|. .|..+++.+|.++|++||+|.++.+-.+.+ -||.|+|.+.+++.+++...+...
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g---~~~~vef~~~~~~~~~~~~~~~p~ 113 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG---LYAVVEFCQKESIGSLQNGTHTPX 113 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS---EEEEEECC---CCHHHHSSCCCCC
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC---eEEEEEeCCHHHHHHHHhccCCCc
Confidence 46889998 799999999999999999999998865543 699999999999998874333333
No 389
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.22 E-value=0.0038 Score=44.75 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=43.6
Q ss_pred EEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHHH-hC
Q 024698 118 TVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAALN-LG 176 (264)
Q Consensus 118 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al~-ln 176 (264)
.||+-+.|+++...||.++|+.||. ..|+++.|. -|||.|.+++.|..|+. +.
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFGN-IQISWIDDT-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSEE-EEEEEEETT-----EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEEeCChhhhhHHHHHHHhccCC-EEEEEEcCC-----eEEEEecCHHHHHHHHHhcc
Confidence 3444499999999999999999994 467776664 59999999999999994 43
No 390
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.91 E-value=0.0096 Score=42.60 Aligned_cols=67 Identities=12% Similarity=0.123 Sum_probs=48.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCC----CceEEEEEecCHHHHHHHH-HhCCceeCC
Q 024698 116 RRTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHS----VLRFAFVEFADEHGARAAL-NLGGTMLGY 182 (264)
Q Consensus 116 ~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~----~~g~afV~f~~~e~a~~Al-~ln~~~~~g 182 (264)
+-+|.|+.||+.+|++++.+.++..-++.....+..+.+ .-.-|||.|.+.++...-. .++|..+.+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 346999999999999998887776544432222221111 1247999999999999888 799998843
No 391
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.65 E-value=0.079 Score=38.18 Aligned_cols=43 Identities=19% Similarity=0.186 Sum_probs=36.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHhh---cCCCceEEEEeeccccce
Q 024698 212 CSRTVYCTNIDKKVPQAEVKQFFEA---ACGGEVRTLPCMIILFYF 254 (264)
Q Consensus 212 ~~~~i~v~nL~~~~te~~L~~~F~~---~~gG~I~~v~l~~d~~~~ 254 (264)
...+|.|.|||+.++++.|.-+|+. --||+|.++....+-|.+
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~~AvI 52 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLGCGGVL 52 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEETTEEEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcCCcEEE
Confidence 4678999999999999999999998 367999999998864433
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=93.59 E-value=0.062 Score=38.35 Aligned_cols=48 Identities=10% Similarity=0.034 Sum_probs=38.7
Q ss_pred cccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhc
Q 024698 29 KSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNF 95 (264)
Q Consensus 29 ~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~ 95 (264)
..+.+....||..+|+.||.| .|+++-| .-|||.|.+++ .|..+++.+
T Consensus 22 ~FP~ewKt~DI~~lFs~fggv-~I~WidD--------------TsAlvvf~~~~----~a~~al~~i 69 (100)
T 1whv_A 22 TFPKEWKTSDLYQLFSAFGNI-QISWIDD--------------TSAFVSLSQPE----QVQIAVNTS 69 (100)
T ss_dssp ECCTTCCHHHHHHHHTTTCSC-CCEEEET--------------TEEEEECSCHH----HHHHHHHHH
T ss_pred eCChhhhhHHHHHHhhccCCE-EEEEEcC--------------CeEEEEecCHH----HHHHHHHhc
Confidence 677888999999999999965 5666644 57999999999 776666654
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=93.12 E-value=0.065 Score=38.33 Aligned_cols=49 Identities=10% Similarity=0.047 Sum_probs=39.0
Q ss_pred cccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhcc
Q 024698 29 KSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFN 96 (264)
Q Consensus 29 ~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~ 96 (264)
..+.+....||..+|+.||.| .|+++-| .-|||.|.+++ .|..+++.+.
T Consensus 12 ~FP~ewKt~Di~~lFs~fggv-~I~WidD--------------TsAlvvf~~~~----~a~~al~~i~ 60 (101)
T 3ctr_A 12 TFPKEWKTSDLYQLFSAFGNI-QISWIDD--------------TSAFVSLSQPE----QVKIAVNTSK 60 (101)
T ss_dssp ECCTTCCHHHHHHHTTTSEEE-EEEEEET--------------TEEEEEEEEEC----HHHHHHHHHT
T ss_pred eCChhhhhHHHHHHHhccCCE-EEEEEcC--------------CeEEEEecCHH----HHHHHHHhcc
Confidence 467788899999999999954 6666654 57999999999 7777777554
No 394
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=92.87 E-value=0.15 Score=37.25 Aligned_cols=57 Identities=7% Similarity=-0.062 Sum_probs=48.8
Q ss_pred CcccccccchhcHHHHHHHhhcc-----CCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 24 NLETKKSESEFTVQKLVDMFTKL-----NPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 24 ~~~~~~~~~~~t~~~L~~~F~~~-----G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
....=+++-.++...++.+.+++ |.|..+.+.+|..+ |.|+|.+.. .|-+|.-.++|
T Consensus 23 tiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~G-------------Aivef~d~~----~AgKasLaL~G 84 (117)
T 2l9w_A 23 LICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNG-------------AIIIFRDSK----FAAKMLMILNG 84 (117)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTE-------------EEEECSCHH----HHHHHHHHHSS
T ss_pred EEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCc-------------eEEEEccch----hhHHHHhhcCC
Confidence 55667889999999999999999 99999999988743 999999999 66677666665
No 395
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=91.15 E-value=0.25 Score=36.58 Aligned_cols=43 Identities=14% Similarity=0.219 Sum_probs=34.8
Q ss_pred cHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhh
Q 024698 35 TVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNN 94 (264)
Q Consensus 35 t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~ 94 (264)
....+...|++||+|++...+ ... .+-.|.|.+.. +|++|++.
T Consensus 36 ~~~~VL~~F~~~G~Iv~~~~~--~~~-----------NWihI~Y~s~~----~A~rAL~k 78 (119)
T 1wwh_A 36 SASYILLQFAQYGNILKHVMS--NTG-----------NWMHIRYQSKL----QARKALSK 78 (119)
T ss_dssp GHHHHHHHHHTTSCEEEEEEC--SSS-----------SEEEEEESSHH----HHHHHHTT
T ss_pred HHHHHHHHHHhhCcEEEeccC--CCC-----------CeEEEEeCCHH----HHHHHHHh
Confidence 356889999999999998862 122 79999999999 88888765
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=88.91 E-value=0.18 Score=46.21 Aligned_cols=44 Identities=11% Similarity=0.189 Sum_probs=32.0
Q ss_pred ccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCccccc
Q 024698 30 SESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNF 85 (264)
Q Consensus 30 ~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~ 85 (264)
.+.+.++.+|.+.|++||+|.++.+-.+.+ -|+-|+|.+.++++
T Consensus 60 ~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g------------~~~~vef~~~~~~~ 103 (464)
T 3pq1_A 60 CPEKISENKFLKYLSQFGPINNHFFYESFG------------LYAVVEFCQKESIG 103 (464)
T ss_dssp ECCC---CHHHHHHGGGSCCCCEEEECSSS------------EEEEEECC---CCH
T ss_pred cCCCCCHHHHHHHHHhcCCcceEEEEccCC------------eEEEEEeCCHHHHH
Confidence 568899999999999999999998875432 69999999999555
No 397
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=85.58 E-value=1.8 Score=30.28 Aligned_cols=62 Identities=13% Similarity=-0.040 Sum_probs=44.0
Q ss_pred cccccchhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 27 TKKSESEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 27 ~~~~~~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
.++|+..+|++++.+..+.+..+....+..-+...+ .....-|||.|.+.+ ++..-...++|
T Consensus 6 IRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~-----~~~~SRaYi~f~~~e----~v~~f~~~~~g 67 (91)
T 1uw4_A 6 IRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLY-----PHMYARAYINFKNQE----DIILFRDRFDG 67 (91)
T ss_dssp EEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSST-----TCCCEEEEEEESSSH----HHHHHHHHHTT
T ss_pred EeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCC-----CCcceEEEEEeCCHH----HHHHHHHHhCC
Confidence 578999999999999999998765544433222111 122355999999999 77777777776
No 398
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=83.85 E-value=0.85 Score=34.26 Aligned_cols=56 Identities=5% Similarity=0.146 Sum_probs=34.4
Q ss_pred cHHHHHHHhhccCCccEEE-ccccCC-----CCCcccccc-CCCceEEeccCCcccccchHHHHHhh
Q 024698 35 TVQKLVDMFTKLNPLAKEF-FPSYYH-----QHTDHHFSV-INNNFADDNKQSAIDNFNNNRRRRNN 94 (264)
Q Consensus 35 t~~~L~~~F~~~G~i~~i~-i~~~~~-----~~~~r~~~~-~~~gf~fV~f~~~~~a~~~A~~a~~~ 94 (264)
....+.+.|++||.|.+-. ..+... +.+.+.++. .+..+..|+|.++. +|++|++.
T Consensus 19 ~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~----~A~rAL~~ 81 (132)
T 3p3d_A 19 MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPA----SAVDALLE 81 (132)
T ss_dssp GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHH----HHHHHHTT
T ss_pred HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHH----HHHHHHHh
Confidence 4567889999999998743 222110 001111111 24588899999999 88888753
No 399
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=82.72 E-value=3.1 Score=38.48 Aligned_cols=53 Identities=21% Similarity=0.294 Sum_probs=42.6
Q ss_pred CEEEEcCCCCCCCHHHHHHHhhcCCCeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhC
Q 024698 117 RTVYVSDIDQNITEERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLG 176 (264)
Q Consensus 117 ~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln 176 (264)
..++|+ +|..+...+|.+.|+.||.+ +|+++.| -.|||.|.+.+.|..++ .++
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-----t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-----TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-----SEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-----CeEEEEECCHHHHHHHHHHHH
Confidence 346666 99999999999999999965 5555443 36999999999999998 564
No 400
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=81.52 E-value=3.2 Score=29.76 Aligned_cols=45 Identities=9% Similarity=0.090 Sum_probs=36.3
Q ss_pred HHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhccC
Q 024698 36 VQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFNQ 97 (264)
Q Consensus 36 ~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~~ 97 (264)
+++++++|.+|+++..-...++- +=.-|.|.+++ +|.+|+..+++
T Consensus 24 k~~~e~Lf~~~~~~~tF~~lkSF-------------RRirv~F~~~~----~A~~AR~~Lh~ 68 (104)
T 1wey_A 24 RAKFESLFRTYDKDTTFQYFKSF-------------KRVRINFSNPL----SAADARLRLHK 68 (104)
T ss_dssp HHHHHHHHHTTCSSCEEEEETTT-------------TEEEEECSSTT----HHHHHHHTSTT
T ss_pred HHHHHHHHHhhCcCcceeecCcc-------------eEEEEEeCChH----HHHHHHHHhcc
Confidence 46889999999999887665543 22679999999 88899888876
No 401
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=64.66 E-value=2.1 Score=30.36 Aligned_cols=25 Identities=8% Similarity=0.170 Sum_probs=21.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHhhc
Q 024698 213 SRTVYCTNIDKKVPQAEVKQFFEAA 237 (264)
Q Consensus 213 ~~~i~v~nL~~~~te~~L~~~F~~~ 237 (264)
.-.|-|+.|||++||+++.+.+++.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~ 33 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPL 33 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCc
Confidence 4578999999999999988776654
No 402
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=49.85 E-value=29 Score=27.11 Aligned_cols=56 Identities=16% Similarity=0.103 Sum_probs=38.3
Q ss_pred EEEEcCCCC---------CCCHHHHHHHh--hcCCCeeEEEEecCCCCCceEEEEEecCHHH-HHHHHH
Q 024698 118 TVYVSDIDQ---------NITEERLAGLF--SSCGQVVDCRVCGDPHSVLRFAFVEFADEHG-ARAALN 174 (264)
Q Consensus 118 ~lfV~nLp~---------~~te~~L~~~F--~~~G~i~~v~i~~d~~~~~g~afV~f~~~e~-a~~Al~ 174 (264)
+..|-|+|. ..+..+|++.| +.|.++. |+.+.++....|++.|.|.+.-. -..|++
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 355667775 14457899977 8998876 55555555678999999987443 344443
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=37.45 E-value=75 Score=20.43 Aligned_cols=58 Identities=12% Similarity=0.126 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHhhcCC-----CeeEEEEecCCCCCceEEEEEecCHHHHHHHH-HhCCceeCCeeEEEeeC
Q 024698 126 QNITEERLAGLFSSCG-----QVVDCRVCGDPHSVLRFAFVEFADEHGARAAL-NLGGTMLGYYPVRVLPS 190 (264)
Q Consensus 126 ~~~te~~L~~~F~~~G-----~i~~v~i~~d~~~~~g~afV~f~~~e~a~~Al-~ln~~~~~g~~i~V~~~ 190 (264)
..++..+|...+..-+ .|-.+++. ..|.||+-.. +.+..++ .|++..+.|+.++|..+
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~------d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIM------DNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEEC------SSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEEC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEe------CCcEEEEECH-HHHHHHHHHhccccCcCceEEEEEC
Confidence 4566677777776444 45566662 2378888854 4466777 79999999999988764
No 404
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=35.03 E-value=43 Score=30.72 Aligned_cols=46 Identities=11% Similarity=0.065 Sum_probs=35.0
Q ss_pred chhcHHHHHHHhhccCCccEEEccccCCCCCccccccCCCceEEeccCCcccccchHHHHHhhcc
Q 024698 32 SEFTVQKLVDMFTKLNPLAKEFFPSYYHQHTDHHFSVINNNFADDNKQSAIDNFNNNRRRRNNFN 96 (264)
Q Consensus 32 ~~~t~~~L~~~F~~~G~i~~i~i~~~~~~~~~r~~~~~~~gf~fV~f~~~~~a~~~A~~a~~~~~ 96 (264)
......+|.++|+.||.+ +|+++.+ ..|||.|.+.+ .|..+++.+.
T Consensus 449 ~~~~~~~i~~~fs~fg~v-~V~widd--------------t~a~V~~~~~~----~a~~~l~~~~ 494 (507)
T 3d45_A 449 KEWKTSDLYQLFSAFGNI-QISWIDD--------------TSAFVSLSQPE----QVQIAVNTSK 494 (507)
T ss_dssp TTCCHHHHHHHGGGGCCC-EEEECSS--------------SEEEEECSCHH----HHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhcCCE-EEEEEcC--------------CeEEEEECCHH----HHHHHHHHHH
Confidence 455778999999999954 6665543 56999999999 6666666664
No 405
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=24.56 E-value=27 Score=24.60 Aligned_cols=16 Identities=19% Similarity=0.457 Sum_probs=12.4
Q ss_pred chhcHHHHHHHhhccC
Q 024698 32 SEFTVQKLVDMFTKLN 47 (264)
Q Consensus 32 ~~~t~~~L~~~F~~~G 47 (264)
...+-..|+++|++||
T Consensus 86 ns~DI~~ire~fqKYG 101 (101)
T 4aj5_1 86 NSMDIMKIREYFQKYG 101 (101)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHcC
Confidence 3457789999999998
No 406
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=23.71 E-value=62 Score=22.55 Aligned_cols=68 Identities=10% Similarity=0.048 Sum_probs=44.6
Q ss_pred EEEEEecCHHHHHHHH----HhCCceeCCeeEEEeeCCCCCCCCCCCCCCCChhhhcCCCCeEEEcCCCCCCCHHHHHHH
Q 024698 158 FAFVEFADEHGARAAL----NLGGTMLGYYPVRVLPSKTAILPVNPTFLPRSEDEREMCSRTVYCTNIDKKVPQAEVKQF 233 (264)
Q Consensus 158 ~afV~f~~~e~a~~Al----~ln~~~~~g~~i~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~nL~~~~te~~L~~~ 233 (264)
|.++.|.-+.++.+-+ ++|.-.+.--.++|.. + ..--++|| |.|+++++++..+
T Consensus 7 Y~~~~~~a~~~~v~eler~~r~~e~vlR~l~v~~e~----M----------------r~YE~m~I--l~P~l~ee~~~~~ 64 (96)
T 2kjw_A 7 FLWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTT----P----------------GRYEVNIV--LNPNLDQSQLALE 64 (96)
T ss_dssp CEEECCCCCHHHHHHHHHHHHHCTTCSEEEEEECSS----S----------------SCEEEEEE--CCSSCCHHHHHHH
T ss_pred EEEEEeecChhHHHHHHHHhccchhhhhhhheehhh----h----------------hhhheeee--eCCCCCHHHHHHH
Confidence 8899998887776665 3666655444444441 1 02346777 6788999998887
Q ss_pred Hhhc------CCCceEEEEe
Q 024698 234 FEAA------CGGEVRTLPC 247 (264)
Q Consensus 234 F~~~------~gG~I~~v~l 247 (264)
.++| .||.|.++.-
T Consensus 65 ve~~~~iI~~~gG~i~~ve~ 84 (96)
T 2kjw_A 65 KEIIQRALENYGARVEKVEE 84 (96)
T ss_dssp HHHHHHHHHHHTCCCSCCEE
T ss_pred HHHHHHHHHhCCCEEEEEec
Confidence 7776 3567765543
No 407
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=21.77 E-value=48 Score=16.60 Aligned_cols=12 Identities=17% Similarity=0.542 Sum_probs=10.1
Q ss_pred HHHHHHHhhccC
Q 024698 36 VQKLVDMFTKLN 47 (264)
Q Consensus 36 ~~~L~~~F~~~G 47 (264)
-.+++++|.++|
T Consensus 14 ikqvkklfkkwg 25 (26)
T 1ytr_A 14 IKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHHcC
Confidence 468899999987
No 408
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=21.58 E-value=16 Score=27.69 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=16.2
Q ss_pred HHHHHHhhcCCCeeEEEEecCCCCCceEEEEEec
Q 024698 131 ERLAGLFSSCGQVVDCRVCGDPHSVLRFAFVEFA 164 (264)
Q Consensus 131 ~~L~~~F~~~G~i~~v~i~~d~~~~~g~afV~f~ 164 (264)
+|+.++|...|.|+-... .+||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn~------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC------CCCeeEEeeC
Confidence 455566777776654322 5689999875
Done!