Query 024699
Match_columns 264
No_of_seqs 90 out of 101
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 06:41:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024699.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024699hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02169 SMC_prok_A chromosom 97.7 0.0092 2E-07 62.5 22.0 24 193-216 471-494 (1164)
2 PRK11637 AmiB activator; Provi 97.7 0.042 9.2E-07 53.3 24.9 80 127-206 172-251 (428)
3 TIGR02169 SMC_prok_A chromosom 97.6 0.014 3.1E-07 61.1 21.6 51 39-89 292-342 (1164)
4 PF00038 Filament: Intermediat 97.6 0.023 4.9E-07 52.2 20.5 94 62-155 47-140 (312)
5 PRK09039 hypothetical protein; 97.5 0.012 2.5E-07 56.4 19.0 147 65-214 42-199 (343)
6 PF08317 Spc7: Spc7 kinetochor 97.1 0.098 2.1E-06 49.4 19.6 154 67-220 105-266 (325)
7 PF10473 CENP-F_leu_zip: Leuci 97.1 0.079 1.7E-06 45.4 16.9 111 99-215 22-136 (140)
8 PF05701 WEMBL: Weak chloropla 97.0 0.14 3E-06 51.5 21.0 68 113-180 283-361 (522)
9 PRK02224 chromosome segregatio 97.0 0.15 3.2E-06 53.2 21.6 38 104-141 244-281 (880)
10 PF07888 CALCOCO1: Calcium bin 97.0 0.15 3.4E-06 52.1 20.9 32 186-217 285-316 (546)
11 PRK11637 AmiB activator; Provi 96.9 0.36 7.9E-06 46.9 22.3 61 128-191 162-222 (428)
12 PF00038 Filament: Intermediat 96.9 0.066 1.4E-06 49.1 15.8 99 114-215 50-152 (312)
13 PRK03918 chromosome segregatio 96.8 0.22 4.8E-06 51.7 20.4 73 101-173 221-293 (880)
14 PF06818 Fez1: Fez1; InterPro 96.7 0.25 5.3E-06 44.9 18.1 147 64-213 12-199 (202)
15 PF09726 Macoilin: Transmembra 96.7 0.7 1.5E-05 48.6 23.9 178 60-241 451-676 (697)
16 PF05701 WEMBL: Weak chloropla 96.7 0.15 3.2E-06 51.3 18.3 96 113-215 311-431 (522)
17 PF08317 Spc7: Spc7 kinetochor 96.7 0.051 1.1E-06 51.3 13.8 35 59-93 153-187 (325)
18 PF09726 Macoilin: Transmembra 96.7 0.11 2.4E-06 54.3 17.4 29 115-143 457-485 (697)
19 PF12325 TMF_TATA_bd: TATA ele 96.5 0.061 1.3E-06 44.9 11.9 72 105-179 20-91 (120)
20 TIGR01843 type_I_hlyD type I s 96.5 0.72 1.6E-05 43.1 20.3 62 161-222 215-277 (423)
21 TIGR00606 rad50 rad50. This fa 96.5 0.29 6.3E-06 54.1 20.1 62 159-220 846-910 (1311)
22 COG1196 Smc Chromosome segrega 96.5 0.48 1E-05 51.8 21.4 32 185-216 857-888 (1163)
23 COG1196 Smc Chromosome segrega 96.5 0.49 1.1E-05 51.7 21.4 38 114-151 379-416 (1163)
24 TIGR01000 bacteriocin_acc bact 96.4 0.53 1.2E-05 46.0 19.5 25 157-181 237-261 (457)
25 PRK04863 mukB cell division pr 96.4 0.48 1E-05 53.6 21.0 158 61-220 934-1117(1486)
26 COG4372 Uncharacterized protei 96.3 1.1 2.4E-05 44.8 20.9 154 48-212 109-280 (499)
27 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.3 0.5 1.1E-05 39.2 16.9 123 67-195 8-130 (132)
28 COG1579 Zn-ribbon protein, pos 96.3 0.5 1.1E-05 43.8 17.6 131 49-183 11-151 (239)
29 KOG0995 Centromere-associated 96.3 0.28 6.2E-06 50.4 17.0 150 62-219 213-367 (581)
30 KOG0161 Myosin class II heavy 96.3 0.56 1.2E-05 54.2 20.9 134 51-184 1396-1529(1930)
31 PRK02224 chromosome segregatio 96.2 0.53 1.2E-05 49.1 19.3 19 39-57 181-199 (880)
32 TIGR00606 rad50 rad50. This fa 96.2 0.63 1.4E-05 51.5 20.6 55 166-222 1050-1104(1311)
33 PRK03918 chromosome segregatio 96.2 0.86 1.9E-05 47.4 20.5 14 202-215 402-415 (880)
34 PF10174 Cast: RIM-binding pro 96.2 0.58 1.2E-05 49.8 19.3 90 43-133 55-164 (775)
35 PF07888 CALCOCO1: Calcium bin 96.1 0.91 2E-05 46.6 19.5 77 37-113 139-232 (546)
36 PHA02562 46 endonuclease subun 95.7 1.6 3.4E-05 43.1 19.1 12 97-108 223-234 (562)
37 PF13514 AAA_27: AAA domain 95.7 2.3 4.9E-05 46.4 21.9 135 46-180 158-327 (1111)
38 PF07798 DUF1640: Protein of u 95.6 0.43 9.4E-06 41.4 13.4 40 51-93 29-68 (177)
39 PRK04778 septation ring format 95.5 1.5 3.3E-05 44.5 18.7 163 58-220 245-419 (569)
40 PF04156 IncA: IncA protein; 95.5 0.69 1.5E-05 39.7 14.1 36 58-93 77-112 (191)
41 PF06160 EzrA: Septation ring 95.5 1.1 2.3E-05 45.6 17.4 174 39-217 220-405 (560)
42 PHA02562 46 endonuclease subun 95.4 1.8 3.9E-05 42.6 18.3 52 126-177 300-351 (562)
43 PF12325 TMF_TATA_bd: TATA ele 95.4 0.53 1.1E-05 39.3 12.4 82 111-192 16-97 (120)
44 PF15070 GOLGA2L5: Putative go 95.3 2 4.4E-05 44.6 19.1 149 65-213 18-193 (617)
45 KOG0977 Nuclear envelope prote 95.3 2 4.3E-05 44.3 18.6 54 159-212 172-229 (546)
46 COG1579 Zn-ribbon protein, pos 95.3 2.1 4.6E-05 39.8 17.2 132 71-203 12-143 (239)
47 TIGR01843 type_I_hlyD type I s 95.3 2.6 5.6E-05 39.4 19.7 27 194-220 242-268 (423)
48 PF07798 DUF1640: Protein of u 95.2 1.9 4.2E-05 37.4 15.8 17 202-218 135-151 (177)
49 TIGR03007 pepcterm_ChnLen poly 95.1 1.3 2.7E-05 43.4 16.0 50 131-180 323-372 (498)
50 PF07111 HCR: Alpha helical co 95.1 4.6 9.9E-05 42.9 20.6 173 33-217 15-209 (739)
51 PF09787 Golgin_A5: Golgin sub 94.9 1.5 3.2E-05 44.0 16.2 84 64-149 223-312 (511)
52 KOG1853 LIS1-interacting prote 94.9 3.8 8.2E-05 39.1 18.6 111 63-179 21-131 (333)
53 smart00787 Spc7 Spc7 kinetocho 94.8 0.98 2.1E-05 43.1 14.1 108 114-221 154-287 (312)
54 PF04111 APG6: Autophagy prote 94.8 0.84 1.8E-05 43.4 13.6 96 114-212 39-134 (314)
55 smart00787 Spc7 Spc7 kinetocho 94.7 1.3 2.8E-05 42.3 14.5 95 59-156 148-242 (312)
56 KOG0161 Myosin class II heavy 94.7 4.4 9.6E-05 47.3 20.9 35 163-197 1104-1138(1930)
57 PF10174 Cast: RIM-binding pro 94.6 5.2 0.00011 42.8 20.1 177 39-215 292-489 (775)
58 COG4942 Membrane-bound metallo 94.6 5.6 0.00012 39.9 22.7 26 152-177 167-192 (420)
59 KOG0933 Structural maintenance 94.5 5.1 0.00011 44.2 19.8 60 159-218 804-863 (1174)
60 KOG0995 Centromere-associated 94.5 3.9 8.5E-05 42.3 18.3 155 39-213 226-393 (581)
61 PF14662 CCDC155: Coiled-coil 94.2 4.1 8.9E-05 36.9 19.2 154 51-218 11-185 (193)
62 PF11932 DUF3450: Protein of u 94.2 1.5 3.2E-05 39.8 13.4 82 115-196 53-139 (251)
63 TIGR02680 conserved hypothetic 94.1 6 0.00013 44.5 20.1 63 145-207 902-965 (1353)
64 PF11932 DUF3450: Protein of u 94.1 3.1 6.8E-05 37.7 15.1 95 121-218 38-144 (251)
65 KOG0933 Structural maintenance 94.0 6 0.00013 43.7 19.1 122 58-185 737-879 (1174)
66 KOG4674 Uncharacterized conser 93.9 2.9 6.3E-05 48.3 17.4 159 50-219 1169-1328(1822)
67 PRK09841 cryptic autophosphory 93.9 1.1 2.3E-05 46.7 13.3 114 65-181 270-388 (726)
68 PF12128 DUF3584: Protein of u 93.8 8.1 0.00017 42.8 20.2 65 116-180 311-376 (1201)
69 PF04849 HAP1_N: HAP1 N-termin 93.8 5.3 0.00011 38.5 16.6 157 51-214 86-264 (306)
70 KOG0996 Structural maintenance 93.8 5.7 0.00012 44.4 18.6 50 171-220 978-1034(1293)
71 COG1340 Uncharacterized archae 93.8 2.9 6.2E-05 40.1 14.7 104 97-200 134-244 (294)
72 PF08647 BRE1: BRE1 E3 ubiquit 93.6 2 4.3E-05 34.1 11.5 69 137-209 22-94 (96)
73 COG0419 SbcC ATPase involved i 93.6 12 0.00026 40.0 20.7 10 18-27 456-465 (908)
74 PF05622 HOOK: HOOK protein; 93.6 0.02 4.3E-07 59.2 0.0 160 58-217 235-417 (713)
75 PF10186 Atg14: UV radiation r 93.6 4.6 9.9E-05 36.2 15.1 22 159-180 87-108 (302)
76 PF12128 DUF3584: Protein of u 93.6 9.6 0.00021 42.2 20.3 63 158-220 727-793 (1201)
77 KOG1029 Endocytic adaptor prot 93.5 2.3 5.1E-05 45.8 14.7 84 60-143 435-518 (1118)
78 KOG0976 Rho/Rac1-interacting s 93.4 2.6 5.6E-05 45.7 14.8 100 42-141 327-440 (1265)
79 PF06818 Fez1: Fez1; InterPro 93.3 2.5 5.4E-05 38.5 12.9 127 77-217 11-150 (202)
80 PF14197 Cep57_CLD_2: Centroso 93.3 1.3 2.8E-05 33.7 9.4 54 114-177 8-68 (69)
81 PRK09039 hypothetical protein; 93.3 8.1 0.00018 37.2 17.9 150 62-217 46-210 (343)
82 KOG4603 TBP-1 interacting prot 93.3 4.1 8.9E-05 36.8 13.9 97 118-215 79-179 (201)
83 PF09789 DUF2353: Uncharacteri 93.2 1.8 3.8E-05 41.9 12.4 116 54-172 78-198 (319)
84 KOG0996 Structural maintenance 93.2 12 0.00025 42.1 19.7 163 49-221 430-600 (1293)
85 KOG0250 DNA repair protein RAD 93.1 15 0.00033 40.7 20.5 31 71-101 297-330 (1074)
86 PLN03229 acetyl-coenzyme A car 93.1 15 0.00032 39.5 22.0 84 136-221 646-735 (762)
87 PF10473 CENP-F_leu_zip: Leuci 93.0 5.3 0.00012 34.3 16.1 27 138-164 79-105 (140)
88 PF08614 ATG16: Autophagy prot 92.9 2.7 5.8E-05 36.9 12.3 44 161-210 149-192 (194)
89 PRK04863 mukB cell division pr 92.9 20 0.00042 41.2 21.7 29 190-218 448-476 (1486)
90 KOG4673 Transcription factor T 92.8 0.93 2E-05 48.1 10.5 57 118-174 866-922 (961)
91 TIGR01000 bacteriocin_acc bact 92.8 10 0.00023 37.1 17.4 31 56-86 91-121 (457)
92 PF14662 CCDC155: Coiled-coil 92.7 7.6 0.00016 35.2 17.0 108 41-148 22-139 (193)
93 COG4372 Uncharacterized protei 92.6 13 0.00027 37.6 20.8 96 115-210 127-229 (499)
94 PF12718 Tropomyosin_1: Tropom 92.6 5.8 0.00013 33.7 17.0 127 66-192 4-133 (143)
95 PRK10884 SH3 domain-containing 92.6 2 4.4E-05 38.8 11.2 29 63-91 87-115 (206)
96 KOG2129 Uncharacterized conser 92.6 11 0.00023 38.4 17.0 125 89-217 153-308 (552)
97 cd07651 F-BAR_PombeCdc15_like 92.5 7.6 0.00016 34.8 16.2 141 50-206 62-211 (236)
98 PF13851 GAS: Growth-arrest sp 92.3 8 0.00017 34.6 15.7 25 195-219 147-171 (201)
99 KOG0980 Actin-binding protein 92.3 21 0.00044 39.2 20.0 71 136-206 470-544 (980)
100 PF15035 Rootletin: Ciliary ro 92.0 8.5 0.00018 34.2 15.0 52 167-218 124-179 (182)
101 TIGR01005 eps_transp_fam exopo 91.9 9.6 0.00021 39.6 16.7 38 143-180 356-393 (754)
102 PF08826 DMPK_coil: DMPK coile 91.9 1.3 2.7E-05 33.2 7.6 43 105-147 5-47 (61)
103 PF13514 AAA_27: AAA domain 91.8 23 0.0005 38.8 21.1 82 139-220 784-869 (1111)
104 COG2433 Uncharacterized conser 91.8 4.9 0.00011 42.1 14.1 91 118-218 415-508 (652)
105 PF05667 DUF812: Protein of un 91.7 4.8 0.0001 41.8 14.1 98 120-217 323-427 (594)
106 PF15619 Lebercilin: Ciliary p 91.6 7.8 0.00017 34.7 13.8 18 134-151 120-137 (194)
107 COG5185 HEC1 Protein involved 91.6 7 0.00015 40.2 14.7 151 60-218 247-402 (622)
108 KOG4809 Rab6 GTPase-interactin 91.6 5.9 0.00013 41.2 14.3 119 47-169 330-458 (654)
109 KOG0964 Structural maintenance 91.6 20 0.00043 39.8 18.8 107 41-147 692-821 (1200)
110 KOG0250 DNA repair protein RAD 91.6 20 0.00044 39.8 19.1 55 114-171 375-430 (1074)
111 PF05667 DUF812: Protein of un 91.5 13 0.00029 38.6 17.0 13 207-219 470-482 (594)
112 KOG0612 Rho-associated, coiled 91.5 14 0.0003 41.7 17.7 106 37-142 437-553 (1317)
113 KOG4807 F-actin binding protei 91.3 12 0.00025 38.0 15.7 177 34-216 349-576 (593)
114 PF15070 GOLGA2L5: Putative go 91.1 16 0.00035 38.2 17.3 124 82-215 3-139 (617)
115 PF04156 IncA: IncA protein; 91.1 9.2 0.0002 32.8 14.9 13 77-89 82-94 (191)
116 KOG1029 Endocytic adaptor prot 90.9 20 0.00043 39.1 17.8 84 114-197 433-520 (1118)
117 PF08826 DMPK_coil: DMPK coile 90.9 2.1 4.5E-05 32.1 7.9 50 160-216 5-57 (61)
118 PF05622 HOOK: HOOK protein; 90.9 0.068 1.5E-06 55.3 0.0 101 116-216 279-395 (713)
119 PRK11519 tyrosine kinase; Prov 90.7 5.6 0.00012 41.5 13.7 108 65-179 270-386 (719)
120 PRK04778 septation ring format 90.7 21 0.00046 36.4 19.8 105 114-219 379-504 (569)
121 PF05557 MAD: Mitotic checkpoi 90.7 0.073 1.6E-06 55.1 0.0 26 74-99 126-151 (722)
122 TIGR03017 EpsF chain length de 90.6 7.9 0.00017 37.2 13.7 43 136-178 315-357 (444)
123 KOG4674 Uncharacterized conser 90.5 24 0.00052 41.3 19.1 150 58-214 801-956 (1822)
124 COG0419 SbcC ATPase involved i 90.5 28 0.0006 37.3 21.5 163 58-221 270-440 (908)
125 KOG0612 Rho-associated, coiled 90.5 21 0.00045 40.3 18.0 9 43-51 477-485 (1317)
126 TIGR01005 eps_transp_fam exopo 90.4 19 0.00042 37.4 17.2 19 154-172 314-332 (754)
127 TIGR03007 pepcterm_ChnLen poly 90.4 12 0.00027 36.6 15.1 32 61-92 160-191 (498)
128 TIGR03017 EpsF chain length de 90.4 18 0.00038 34.8 16.1 31 62-92 171-201 (444)
129 PF13805 Pil1: Eisosome compon 90.3 4.6 9.9E-05 38.3 11.4 93 91-192 121-213 (271)
130 PRK11546 zraP zinc resistance 90.0 0.85 1.8E-05 39.4 5.9 50 129-178 62-111 (143)
131 PF10234 Cluap1: Clusterin-ass 90.0 8.1 0.00018 36.5 12.8 67 112-178 170-240 (267)
132 PF10481 CENP-F_N: Cenp-F N-te 89.9 8.2 0.00018 37.1 12.8 108 74-184 16-130 (307)
133 PF09755 DUF2046: Uncharacteri 89.9 20 0.00043 34.7 20.4 50 33-89 19-68 (310)
134 KOG0971 Microtubule-associated 89.7 21 0.00046 39.5 16.9 100 118-217 255-358 (1243)
135 PRK03947 prefoldin subunit alp 89.6 9.5 0.00021 31.5 11.8 45 176-220 93-137 (140)
136 KOG0982 Centrosomal protein Nu 89.6 26 0.00056 35.7 19.6 46 39-84 220-265 (502)
137 PRK01156 chromosome segregatio 89.6 31 0.00067 36.5 20.8 22 144-165 310-331 (895)
138 PF08614 ATG16: Autophagy prot 89.5 4.6 0.0001 35.4 10.3 55 37-91 70-124 (194)
139 cd00890 Prefoldin Prefoldin is 89.4 9.4 0.0002 30.4 11.9 32 184-215 94-125 (129)
140 PF10168 Nup88: Nuclear pore c 89.2 32 0.0007 36.5 17.9 74 143-219 636-713 (717)
141 PRK01156 chromosome segregatio 89.2 33 0.00072 36.3 19.2 40 105-144 623-662 (895)
142 PF09787 Golgin_A5: Golgin sub 89.0 27 0.00059 35.2 20.9 22 158-179 276-297 (511)
143 PF10481 CENP-F_N: Cenp-F N-te 88.8 23 0.00051 34.1 14.9 102 100-221 17-132 (307)
144 KOG3478 Prefoldin subunit 6, K 88.7 14 0.00029 31.3 12.2 95 117-221 11-113 (120)
145 KOG1962 B-cell receptor-associ 88.4 5.3 0.00011 36.8 10.2 29 156-184 186-214 (216)
146 PRK12704 phosphodiesterase; Pr 88.4 32 0.00068 35.1 17.7 55 137-191 91-145 (520)
147 PF10146 zf-C4H2: Zinc finger- 88.3 20 0.00043 33.1 13.9 14 200-213 90-103 (230)
148 PF11559 ADIP: Afadin- and alp 88.2 5 0.00011 33.6 9.2 86 51-157 41-126 (151)
149 PF04728 LPP: Lipoprotein leuc 88.2 3 6.5E-05 30.9 6.9 21 160-180 28-48 (56)
150 PF09728 Taxilin: Myosin-like 88.1 12 0.00026 35.6 12.7 74 114-187 25-98 (309)
151 COG3206 GumC Uncharacterized p 87.8 13 0.00029 36.3 13.3 52 137-188 347-398 (458)
152 KOG0993 Rab5 GTPase effector R 87.7 34 0.00075 34.8 16.5 46 166-211 437-489 (542)
153 PRK10246 exonuclease subunit S 87.6 49 0.0011 36.3 22.6 46 40-85 529-574 (1047)
154 TIGR01010 BexC_CtrB_KpsE polys 87.5 10 0.00022 35.8 11.9 25 155-179 241-265 (362)
155 PF05557 MAD: Mitotic checkpoi 87.4 0.17 3.8E-06 52.4 0.0 115 104-221 291-429 (722)
156 PRK10361 DNA recombination pro 87.3 37 0.00079 34.7 20.1 95 127-225 101-206 (475)
157 KOG0288 WD40 repeat protein Ti 87.2 24 0.00051 35.7 14.5 96 67-165 11-109 (459)
158 PF09731 Mitofilin: Mitochondr 87.2 36 0.00077 34.4 19.8 138 66-205 248-399 (582)
159 PF10498 IFT57: Intra-flagella 87.2 14 0.0003 36.1 12.8 23 199-221 329-351 (359)
160 TIGR03319 YmdA_YtgF conserved 87.2 37 0.00081 34.6 17.7 6 216-221 179-184 (514)
161 PRK10884 SH3 domain-containing 87.1 13 0.00027 33.7 11.7 14 161-174 137-150 (206)
162 PF08776 VASP_tetra: VASP tetr 86.9 3.5 7.7E-05 28.7 6.2 34 130-175 5-38 (40)
163 KOG0977 Nuclear envelope prote 86.8 22 0.00047 36.9 14.4 40 116-155 153-192 (546)
164 PF07926 TPR_MLP1_2: TPR/MLP1/ 86.8 17 0.00036 30.1 16.9 67 144-210 47-117 (132)
165 KOG1937 Uncharacterized conser 86.6 23 0.00049 36.3 14.0 24 120-143 295-318 (521)
166 TIGR03185 DNA_S_dndD DNA sulfu 86.5 43 0.00092 34.6 17.6 30 81-110 378-407 (650)
167 PF09730 BicD: Microtubule-ass 86.5 48 0.001 35.5 17.1 55 163-217 121-182 (717)
168 KOG0994 Extracellular matrix g 86.4 45 0.00098 38.1 17.1 44 65-108 1460-1506(1758)
169 PF02050 FliJ: Flagellar FliJ 86.1 13 0.00028 28.2 11.2 83 116-198 10-94 (123)
170 PF05483 SCP-1: Synaptonemal c 85.9 55 0.0012 35.2 19.3 148 60-216 539-686 (786)
171 KOG2264 Exostosin EXT1L [Signa 85.8 5 0.00011 42.2 9.3 55 116-180 84-138 (907)
172 KOG0249 LAR-interacting protei 85.6 24 0.00053 38.0 14.3 23 36-58 93-115 (916)
173 KOG3433 Protein involved in me 85.5 7 0.00015 35.6 9.1 55 163-217 88-142 (203)
174 PF07106 TBPIP: Tat binding pr 85.5 13 0.00029 31.6 10.6 59 118-177 79-137 (169)
175 PF07106 TBPIP: Tat binding pr 85.5 15 0.00032 31.4 10.8 67 117-184 71-137 (169)
176 COG4942 Membrane-bound metallo 85.2 45 0.00097 33.6 20.4 45 166-213 202-246 (420)
177 PF14362 DUF4407: Domain of un 85.2 29 0.00064 32.0 13.4 36 163-198 218-253 (301)
178 PF05483 SCP-1: Synaptonemal c 85.1 59 0.0013 35.0 20.3 108 44-154 404-521 (786)
179 PF05837 CENP-H: Centromere pr 85.0 16 0.00036 29.5 10.3 71 112-186 11-81 (106)
180 TIGR03794 NHPM_micro_HlyD NHPM 85.0 38 0.00083 32.7 15.0 31 192-222 228-259 (421)
181 PF07889 DUF1664: Protein of u 84.8 18 0.00038 30.7 10.7 62 112-179 44-105 (126)
182 PF11559 ADIP: Afadin- and alp 84.7 22 0.00048 29.7 13.7 47 108-154 49-95 (151)
183 PF15619 Lebercilin: Ciliary p 84.6 29 0.00064 31.1 20.2 88 114-201 64-156 (194)
184 KOG4807 F-actin binding protei 84.6 50 0.0011 33.7 15.6 145 69-217 363-538 (593)
185 KOG4673 Transcription factor T 84.6 65 0.0014 34.9 18.5 50 63-114 424-473 (961)
186 PF09730 BicD: Microtubule-ass 84.5 44 0.00095 35.8 15.7 83 97-182 30-124 (717)
187 PF06008 Laminin_I: Laminin Do 84.4 32 0.0007 31.3 19.6 147 34-196 17-168 (264)
188 PF12592 DUF3763: Protein of u 84.4 4.4 9.5E-05 29.9 6.1 55 158-212 2-56 (57)
189 PF10186 Atg14: UV radiation r 84.4 30 0.00065 30.9 18.8 36 114-149 59-94 (302)
190 TIGR02231 conserved hypothetic 84.2 12 0.00026 37.4 11.1 24 66-89 75-98 (525)
191 KOG0979 Structural maintenance 84.1 76 0.0017 35.4 18.0 111 102-219 246-360 (1072)
192 PF06120 Phage_HK97_TLTM: Tail 83.9 41 0.00089 32.4 14.0 101 115-215 38-151 (301)
193 PF07794 DUF1633: Protein of u 83.8 23 0.0005 36.9 12.9 116 97-221 593-721 (790)
194 PF07139 DUF1387: Protein of u 83.7 22 0.00047 34.4 12.0 93 72-166 156-253 (302)
195 KOG2391 Vacuolar sorting prote 83.4 7.6 0.00016 38.2 9.0 83 124-206 213-296 (365)
196 COG2433 Uncharacterized conser 83.1 22 0.00047 37.5 12.5 63 157-220 475-539 (652)
197 PF04626 DEC-1_C: Dec-1 protei 82.9 0.7 1.5E-05 39.2 1.5 23 226-250 74-96 (132)
198 PF02403 Seryl_tRNA_N: Seryl-t 82.5 13 0.00028 29.3 8.6 37 110-146 28-64 (108)
199 PF10498 IFT57: Intra-flagella 82.5 52 0.0011 32.2 15.2 55 163-217 266-320 (359)
200 PRK10361 DNA recombination pro 82.0 64 0.0014 33.0 17.2 45 158-202 149-193 (475)
201 PF14197 Cep57_CLD_2: Centroso 81.9 11 0.00024 28.6 7.7 47 58-104 1-47 (69)
202 PRK00106 hypothetical protein; 81.8 68 0.0015 33.2 18.8 55 137-191 106-160 (535)
203 PF08912 Rho_Binding: Rho Bind 81.8 7.5 0.00016 30.0 6.7 42 123-164 1-42 (69)
204 PF12329 TMF_DNA_bd: TATA elem 81.7 16 0.00036 27.8 8.6 56 87-152 5-60 (74)
205 PF04111 APG6: Autophagy prote 81.6 27 0.00059 33.3 11.9 22 68-89 15-36 (314)
206 KOG0018 Structural maintenance 81.5 98 0.0021 34.8 18.1 155 60-217 158-350 (1141)
207 PF08581 Tup_N: Tup N-terminal 81.4 18 0.00039 28.3 8.8 60 158-218 6-77 (79)
208 TIGR02231 conserved hypothetic 81.3 20 0.00044 35.8 11.4 32 187-218 141-172 (525)
209 TIGR02473 flagell_FliJ flagell 81.3 26 0.00057 28.1 12.0 43 156-198 68-110 (141)
210 TIGR03752 conj_TIGR03752 integ 81.3 19 0.00041 36.7 11.1 46 48-93 45-90 (472)
211 PF03962 Mnd1: Mnd1 family; I 81.2 7.8 0.00017 34.3 7.6 75 115-193 66-140 (188)
212 PF02050 FliJ: Flagellar FliJ 81.2 21 0.00046 26.9 12.2 28 67-94 3-30 (123)
213 PLN03229 acetyl-coenzyme A car 81.0 78 0.0017 34.2 15.9 149 37-217 432-590 (762)
214 PRK11578 macrolide transporter 81.0 33 0.00071 32.4 12.2 93 116-222 97-189 (370)
215 PF05266 DUF724: Protein of un 80.9 41 0.00088 30.1 12.1 92 119-220 87-181 (190)
216 PF01920 Prefoldin_2: Prefoldi 80.9 23 0.0005 27.1 10.9 41 135-175 1-41 (106)
217 TIGR02971 heterocyst_DevB ABC 80.8 46 0.001 30.6 13.4 30 193-222 181-210 (327)
218 PF00261 Tropomyosin: Tropomyo 80.8 43 0.00094 30.2 19.3 156 66-221 5-192 (237)
219 PF10146 zf-C4H2: Zinc finger- 80.8 47 0.001 30.6 14.0 51 118-171 53-103 (230)
220 KOG1853 LIS1-interacting prote 80.4 57 0.0012 31.4 15.1 30 144-173 152-181 (333)
221 PRK15178 Vi polysaccharide exp 80.0 46 0.001 33.6 13.3 52 129-180 283-338 (434)
222 PF04912 Dynamitin: Dynamitin 80.0 60 0.0013 31.4 14.7 44 65-108 264-309 (388)
223 PRK03598 putative efflux pump 80.0 51 0.0011 30.6 14.3 83 140-222 122-209 (331)
224 PF05911 DUF869: Plant protein 79.8 95 0.0021 33.6 17.9 67 85-154 61-135 (769)
225 KOG4403 Cell surface glycoprot 79.7 12 0.00025 38.3 9.0 17 205-221 309-325 (575)
226 PF13851 GAS: Growth-arrest sp 79.7 45 0.00098 29.8 18.7 94 115-208 45-138 (201)
227 PF06810 Phage_GP20: Phage min 79.7 17 0.00037 31.4 9.0 60 118-177 13-72 (155)
228 PRK06569 F0F1 ATP synthase sub 79.5 42 0.00092 29.3 14.1 53 90-142 40-94 (155)
229 PF05478 Prominin: Prominin; 79.3 78 0.0017 33.8 15.5 116 44-170 190-327 (806)
230 PF08172 CASP_C: CASP C termin 78.9 21 0.00045 33.2 9.9 36 182-217 91-126 (248)
231 PLN02939 transferase, transfer 78.8 1.1E+02 0.0025 33.9 17.3 157 34-198 194-365 (977)
232 PF12718 Tropomyosin_1: Tropom 78.8 40 0.00087 28.7 16.5 57 99-158 12-68 (143)
233 TIGR02971 heterocyst_DevB ABC 78.7 54 0.0012 30.1 15.6 100 121-220 93-201 (327)
234 PRK11519 tyrosine kinase; Prov 78.5 44 0.00095 35.0 13.2 24 188-211 374-397 (719)
235 TIGR00414 serS seryl-tRNA synt 78.4 21 0.00045 35.2 10.3 29 115-143 34-62 (418)
236 PF12252 SidE: Dot/Icm substra 78.3 52 0.0011 37.2 13.8 139 64-215 1065-1224(1439)
237 KOG0243 Kinesin-like protein [ 78.1 1.2E+02 0.0027 33.9 17.0 166 32-221 367-548 (1041)
238 PF06785 UPF0242: Uncharacteri 78.1 43 0.00093 33.2 12.1 96 50-153 77-176 (401)
239 PF05266 DUF724: Protein of un 77.9 40 0.00086 30.2 11.1 74 98-174 107-184 (190)
240 PF09304 Cortex-I_coil: Cortex 77.9 39 0.00085 28.1 12.7 71 119-199 24-94 (107)
241 PRK13453 F0F1 ATP synthase sub 77.9 45 0.00097 28.8 12.7 85 101-190 49-134 (173)
242 PF04728 LPP: Lipoprotein leuc 77.6 13 0.00029 27.6 6.6 29 120-148 5-33 (56)
243 cd00584 Prefoldin_alpha Prefol 77.5 36 0.00079 27.5 11.8 37 178-214 88-124 (129)
244 PRK10246 exonuclease subunit S 77.4 1.2E+02 0.0026 33.4 18.9 16 66-81 220-235 (1047)
245 PF14182 YgaB: YgaB-like prote 76.9 25 0.00055 27.8 8.4 52 118-181 14-65 (79)
246 KOG0994 Extracellular matrix g 76.5 1.5E+02 0.0033 34.2 18.9 32 190-221 1709-1740(1758)
247 PRK10476 multidrug resistance 76.3 57 0.0012 30.5 12.2 23 200-222 192-214 (346)
248 PF05008 V-SNARE: Vesicle tran 76.2 25 0.00055 26.0 8.0 42 115-156 36-78 (79)
249 PF09486 HrpB7: Bacterial type 76.1 54 0.0012 28.8 15.2 101 67-179 20-123 (158)
250 COG3206 GumC Uncharacterized p 76.1 48 0.001 32.5 12.1 144 65-214 249-403 (458)
251 PRK05431 seryl-tRNA synthetase 75.9 23 0.00051 34.9 9.9 32 112-143 29-60 (425)
252 TIGR03319 YmdA_YtgF conserved 75.7 99 0.0021 31.6 15.5 22 168-189 161-182 (514)
253 COG1842 PspA Phage shock prote 75.4 67 0.0015 29.5 13.0 44 65-108 27-73 (225)
254 PF06721 DUF1204: Protein of u 75.2 69 0.0015 29.5 12.7 72 137-214 27-100 (228)
255 PF13094 CENP-Q: CENP-Q, a CEN 75.2 15 0.00033 31.1 7.4 35 58-92 23-57 (160)
256 PF11180 DUF2968: Protein of u 74.9 67 0.0014 29.3 11.8 84 68-153 95-182 (192)
257 TIGR00634 recN DNA repair prot 74.9 1E+02 0.0022 31.3 17.4 28 64-91 156-183 (563)
258 PF10212 TTKRSYEDQ: Predicted 74.5 85 0.0018 32.6 13.6 28 191-218 487-514 (518)
259 PF12252 SidE: Dot/Icm substra 74.4 53 0.0011 37.1 12.6 41 176-217 1270-1310(1439)
260 KOG0249 LAR-interacting protei 74.3 74 0.0016 34.6 13.4 152 63-218 71-257 (916)
261 PF03915 AIP3: Actin interacti 74.1 1E+02 0.0022 31.0 15.0 120 68-188 150-278 (424)
262 KOG2751 Beclin-like protein [S 74.0 87 0.0019 31.9 13.3 46 207-254 262-309 (447)
263 smart00806 AIP3 Actin interact 73.9 1.1E+02 0.0023 31.1 19.1 120 67-186 153-280 (426)
264 PF05082 Rop-like: Rop-like; 73.5 29 0.00063 26.6 7.7 60 118-180 2-61 (66)
265 PF08581 Tup_N: Tup N-terminal 73.5 42 0.0009 26.2 10.3 43 113-155 6-48 (79)
266 KOG0921 Dosage compensation co 73.4 3.4 7.4E-05 45.4 3.6 24 185-208 1114-1137(1282)
267 TIGR00634 recN DNA repair prot 73.3 1.1E+02 0.0024 31.1 15.6 24 191-214 353-376 (563)
268 COG1322 Predicted nuclease of 73.0 1.1E+02 0.0024 31.0 19.0 106 116-225 82-197 (448)
269 PF04350 PilO: Pilus assembly 72.8 12 0.00025 30.3 5.9 47 136-182 3-49 (144)
270 PF12329 TMF_DNA_bd: TATA elem 72.8 38 0.00083 25.8 8.3 58 156-220 12-69 (74)
271 KOG4643 Uncharacterized coiled 72.7 1.7E+02 0.0037 33.0 21.2 20 198-217 585-604 (1195)
272 KOG0946 ER-Golgi vesicle-tethe 72.7 1.4E+02 0.0031 32.9 15.1 98 112-209 731-855 (970)
273 KOG4687 Uncharacterized coiled 72.4 40 0.00087 32.8 10.1 118 48-172 90-227 (389)
274 PF03962 Mnd1: Mnd1 family; I 72.3 70 0.0015 28.4 12.6 49 132-180 103-152 (188)
275 PF04880 NUDE_C: NUDE protein, 72.3 1.9 4E-05 38.1 1.2 31 37-71 17-47 (166)
276 PF00170 bZIP_1: bZIP transcri 72.1 21 0.00045 25.9 6.5 41 114-154 22-62 (64)
277 KOG3478 Prefoldin subunit 6, K 72.1 60 0.0013 27.5 12.0 47 77-127 6-52 (120)
278 PF04949 Transcrip_act: Transc 71.8 72 0.0016 28.3 12.8 89 114-212 52-147 (159)
279 TIGR00293 prefoldin, archaeal 71.8 51 0.0011 26.5 11.2 37 178-214 87-123 (126)
280 TIGR02894 DNA_bind_RsfA transc 71.6 53 0.0012 29.1 10.0 71 142-212 83-153 (161)
281 KOG0971 Microtubule-associated 71.6 1.8E+02 0.0039 32.7 18.1 153 67-219 274-431 (1243)
282 KOG0964 Structural maintenance 71.6 1.8E+02 0.0039 32.8 19.4 86 43-134 676-764 (1200)
283 PF10168 Nup88: Nuclear pore c 71.6 84 0.0018 33.5 13.2 73 73-152 533-606 (717)
284 KOG4403 Cell surface glycoprot 71.5 66 0.0014 33.1 11.8 21 192-212 355-375 (575)
285 cd07674 F-BAR_FCHO1 The F-BAR 71.4 83 0.0018 28.8 14.6 40 164-206 165-204 (261)
286 TIGR01069 mutS2 MutS2 family p 71.3 1.1E+02 0.0023 32.9 14.0 16 158-173 574-589 (771)
287 KOG1924 RhoA GTPase effector D 71.0 5 0.00011 43.5 4.1 24 189-212 790-813 (1102)
288 PRK11281 hypothetical protein; 70.7 1.7E+02 0.0037 33.0 15.7 22 68-89 86-107 (1113)
289 PF06160 EzrA: Septation ring 70.6 1.3E+02 0.0029 30.8 15.9 158 37-217 164-332 (560)
290 PRK06569 F0F1 ATP synthase sub 70.6 55 0.0012 28.6 9.8 119 33-169 33-152 (155)
291 KOG2264 Exostosin EXT1L [Signa 70.3 29 0.00063 36.8 9.3 60 109-171 84-143 (907)
292 KOG0963 Transcription factor/C 70.2 1.5E+02 0.0033 31.4 19.0 53 162-217 291-343 (629)
293 PF12004 DUF3498: Domain of un 70.2 1.4 3.1E-05 44.7 0.0 62 48-112 376-451 (495)
294 PF05700 BCAS2: Breast carcino 69.8 19 0.00041 32.4 7.1 69 55-126 136-211 (221)
295 PF15294 Leu_zip: Leucine zipp 69.8 1.1E+02 0.0023 29.4 17.4 126 93-221 85-245 (278)
296 smart00338 BRLZ basic region l 69.2 24 0.00052 25.6 6.3 37 116-152 24-60 (65)
297 PF06705 SF-assemblin: SF-asse 69.1 90 0.0019 28.3 15.9 111 89-216 29-139 (247)
298 TIGR02449 conserved hypothetic 69.0 46 0.001 25.3 7.9 46 104-149 7-52 (65)
299 PF12777 MT: Microtubule-bindi 68.7 31 0.00067 32.9 8.6 68 111-178 214-285 (344)
300 PF12072 DUF3552: Domain of un 68.5 85 0.0018 27.8 13.3 11 70-80 28-38 (201)
301 PF13747 DUF4164: Domain of un 68.4 57 0.0012 25.8 9.1 31 116-146 51-81 (89)
302 COG3883 Uncharacterized protei 68.3 82 0.0018 29.9 11.2 41 115-155 42-82 (265)
303 COG1382 GimC Prefoldin, chaper 68.1 73 0.0016 26.9 11.4 28 192-219 85-112 (119)
304 KOG2629 Peroxisomal membrane a 67.9 44 0.00094 32.3 9.3 75 105-179 119-198 (300)
305 PF15294 Leu_zip: Leucine zipp 67.1 1.2E+02 0.0026 29.0 15.1 77 137-215 195-277 (278)
306 PF06156 DUF972: Protein of un 67.0 33 0.00071 28.2 7.3 12 97-108 4-15 (107)
307 KOG0976 Rho/Rac1-interacting s 66.6 2.2E+02 0.0047 31.8 17.6 47 97-143 197-243 (1265)
308 PF07139 DUF1387: Protein of u 66.5 1.3E+02 0.0028 29.2 12.6 90 118-217 160-255 (302)
309 PRK14474 F0F1 ATP synthase sub 66.4 1.1E+02 0.0024 28.2 15.2 84 102-190 37-121 (250)
310 KOG2991 Splicing regulator [RN 66.4 37 0.00081 32.7 8.5 76 102-183 237-312 (330)
311 PF10211 Ax_dynein_light: Axon 66.3 95 0.0021 27.5 14.4 6 67-72 59-64 (189)
312 COG1340 Uncharacterized archae 66.0 1.3E+02 0.0029 29.0 18.7 72 136-214 135-209 (294)
313 PRK15396 murein lipoprotein; P 65.9 31 0.00067 27.0 6.6 11 119-129 26-36 (78)
314 PF07445 priB_priC: Primosomal 65.9 54 0.0012 28.7 8.9 62 118-181 102-163 (173)
315 COG1730 GIM5 Predicted prefold 65.6 90 0.002 27.0 11.8 45 176-220 93-137 (145)
316 KOG4603 TBP-1 interacting prot 65.6 1.1E+02 0.0023 27.9 11.7 26 166-191 155-180 (201)
317 TIGR03185 DNA_S_dndD DNA sulfu 65.3 1.7E+02 0.0038 30.2 21.9 19 161-179 426-444 (650)
318 KOG1924 RhoA GTPase effector D 64.8 7.8 0.00017 42.1 4.1 19 166-184 795-813 (1102)
319 KOG0999 Microtubule-associated 64.7 2E+02 0.0043 30.7 13.9 59 163-221 194-259 (772)
320 KOG4687 Uncharacterized coiled 64.6 1.5E+02 0.0032 29.1 12.6 6 216-221 209-214 (389)
321 PF12795 MscS_porin: Mechanose 64.5 1.1E+02 0.0024 27.6 13.1 81 58-147 34-114 (240)
322 PF03245 Phage_lysis: Bacterio 64.4 81 0.0018 26.2 9.3 58 165-222 9-66 (125)
323 PF05529 Bap31: B-cell recepto 64.4 56 0.0012 28.4 8.7 72 95-172 119-191 (192)
324 COG1730 GIM5 Predicted prefold 64.4 92 0.002 27.0 9.9 36 58-93 9-44 (145)
325 PF05615 THOC7: Tho complex su 64.3 81 0.0018 26.0 10.1 65 112-179 47-111 (139)
326 cd00632 Prefoldin_beta Prefold 63.5 73 0.0016 25.2 11.5 24 118-141 6-29 (105)
327 PF01576 Myosin_tail_1: Myosin 63.3 2.4 5.1E-05 45.5 0.0 155 58-215 345-506 (859)
328 PF02183 HALZ: Homeobox associ 63.3 24 0.00053 24.7 5.1 35 114-148 8-42 (45)
329 PF10243 MIP-T3: Microtubule-b 63.2 2.4 5.2E-05 42.8 0.0 136 62-219 391-530 (539)
330 PF10153 DUF2361: Uncharacteri 63.0 89 0.0019 26.1 10.3 38 43-80 2-39 (114)
331 KOG1937 Uncharacterized conser 62.7 1.9E+02 0.0042 29.8 20.1 38 144-181 450-487 (521)
332 PRK00409 recombination and DNA 62.7 2.1E+02 0.0046 30.7 14.2 17 199-215 608-624 (782)
333 PF04012 PspA_IM30: PspA/IM30 62.7 1.1E+02 0.0023 26.9 17.7 47 62-108 51-98 (221)
334 COG1566 EmrA Multidrug resista 62.5 1E+02 0.0022 30.2 11.0 18 205-222 197-214 (352)
335 COG1382 GimC Prefoldin, chaper 62.4 96 0.0021 26.2 10.6 73 100-175 26-110 (119)
336 KOG0243 Kinesin-like protein [ 61.8 1.3E+02 0.0028 33.7 12.6 59 157-215 449-507 (1041)
337 TIGR03321 alt_F1F0_F0_B altern 61.7 1.3E+02 0.0028 27.4 12.7 82 101-187 36-118 (246)
338 PF04582 Reo_sigmaC: Reovirus 61.4 12 0.00027 36.3 4.5 27 194-220 122-148 (326)
339 PF00769 ERM: Ezrin/radixin/mo 61.3 1.4E+02 0.0029 27.6 14.0 58 116-176 38-95 (246)
340 KOG0946 ER-Golgi vesicle-tethe 61.2 1.6E+02 0.0035 32.5 12.8 43 44-86 733-775 (970)
341 PF04202 Mfp-3: Foot protein 3 60.8 9.3 0.0002 29.5 2.8 25 226-250 25-54 (71)
342 PF01576 Myosin_tail_1: Myosin 60.7 2.8 6.1E-05 44.9 0.0 88 130-220 544-631 (859)
343 PRK13169 DNA replication intia 60.3 48 0.0011 27.5 7.2 12 97-108 4-15 (110)
344 COG4985 ABC-type phosphate tra 60.2 1E+02 0.0023 29.3 10.1 86 66-174 161-246 (289)
345 PRK07720 fliJ flagellar biosyn 60.1 98 0.0021 25.6 12.3 82 117-198 29-113 (146)
346 PLN02678 seryl-tRNA synthetase 60.0 88 0.0019 31.5 10.3 24 119-142 41-64 (448)
347 TIGR00998 8a0101 efflux pump m 59.9 1.4E+02 0.003 27.3 15.7 17 206-222 194-210 (334)
348 TIGR01541 tape_meas_lam_C phag 59.4 1.7E+02 0.0038 28.2 20.8 18 246-263 255-272 (332)
349 PF12711 Kinesin-relat_1: Kine 59.3 91 0.002 24.9 8.7 27 163-191 51-77 (86)
350 PF04582 Reo_sigmaC: Reovirus 58.7 6.4 0.00014 38.3 2.0 122 97-221 31-156 (326)
351 PRK10698 phage shock protein P 58.6 1.4E+02 0.0031 27.0 16.6 83 61-143 51-145 (222)
352 PF04094 DUF390: Protein of un 58.4 49 0.0011 35.7 8.4 72 131-212 381-452 (828)
353 PRK06800 fliH flagellar assemb 58.2 83 0.0018 29.0 8.9 30 114-143 48-77 (228)
354 PF10805 DUF2730: Protein of u 58.2 80 0.0017 25.4 8.0 49 100-149 48-96 (106)
355 COG1842 PspA Phage shock prote 57.7 1.6E+02 0.0034 27.1 13.7 99 118-218 38-140 (225)
356 COG4477 EzrA Negative regulato 57.6 2.5E+02 0.0055 29.5 16.8 65 152-216 343-407 (570)
357 PRK00409 recombination and DNA 57.6 2.7E+02 0.0059 29.9 14.4 17 158-174 579-595 (782)
358 PRK15136 multidrug efflux syst 57.3 1.9E+02 0.0041 28.0 12.4 16 207-222 206-221 (390)
359 PRK07352 F0F1 ATP synthase sub 57.3 1.2E+02 0.0027 25.9 12.7 83 101-188 50-133 (174)
360 COG5293 Predicted ATPase [Gene 57.0 2.5E+02 0.0054 29.3 13.4 139 62-203 301-453 (591)
361 cd07673 F-BAR_FCHO2 The F-BAR 56.9 1.7E+02 0.0036 27.2 14.6 144 50-207 69-212 (269)
362 PF12761 End3: Actin cytoskele 56.4 93 0.002 28.4 8.9 23 64-86 98-120 (195)
363 KOG3119 Basic region leucine z 56.3 46 0.00099 31.1 7.2 52 111-179 201-252 (269)
364 PF02403 Seryl_tRNA_N: Seryl-t 56.3 96 0.0021 24.3 9.6 60 115-174 26-85 (108)
365 PRK15396 murein lipoprotein; P 56.2 48 0.001 26.0 6.2 32 119-150 33-64 (78)
366 PF15397 DUF4618: Domain of un 56.1 1.8E+02 0.004 27.5 18.5 91 66-156 10-105 (258)
367 TIGR03794 NHPM_micro_HlyD NHPM 56.0 2E+02 0.0043 27.8 17.6 24 197-220 226-249 (421)
368 PF07407 Seadorna_VP6: Seadorn 55.8 56 0.0012 32.5 7.8 81 69-169 32-113 (420)
369 PF04201 TPD52: Tumour protein 55.7 1.1E+02 0.0024 27.1 9.1 47 113-162 31-92 (162)
370 KOG0979 Structural maintenance 55.7 3.5E+02 0.0076 30.6 15.0 128 54-184 573-702 (1072)
371 cd07657 F-BAR_Fes_Fer The F-BA 55.4 1.7E+02 0.0036 26.8 15.1 145 50-213 67-230 (237)
372 PF03954 Lectin_N: Hepatic lec 55.2 39 0.00085 29.3 6.0 38 158-205 96-133 (138)
373 cd07652 F-BAR_Rgd1 The F-BAR ( 55.2 1.6E+02 0.0036 26.6 12.2 38 52-89 69-106 (234)
374 KOG0993 Rab5 GTPase effector R 55.1 2.6E+02 0.0055 28.8 16.2 44 84-130 321-364 (542)
375 PRK09343 prefoldin subunit bet 55.1 1.2E+02 0.0026 25.0 10.5 28 99-126 26-53 (121)
376 PF05911 DUF869: Plant protein 54.7 3.2E+02 0.0068 29.8 16.2 52 157-208 667-718 (769)
377 COG3524 KpsE Capsule polysacch 53.8 2.3E+02 0.0051 28.0 14.1 28 154-181 249-276 (372)
378 PF08776 VASP_tetra: VASP tetr 53.4 41 0.00089 23.5 4.7 26 147-174 4-29 (40)
379 PF12998 ING: Inhibitor of gro 53.4 1E+02 0.0022 23.6 10.9 90 65-156 11-103 (105)
380 COG0598 CorA Mg2+ and Co2+ tra 53.4 2E+02 0.0043 27.1 11.5 16 226-241 279-295 (322)
381 COG5185 HEC1 Protein involved 53.4 2.9E+02 0.0063 29.0 17.3 84 93-183 301-395 (622)
382 PRK09973 putative outer membra 53.3 65 0.0014 25.8 6.5 14 119-132 25-38 (85)
383 PRK14475 F0F1 ATP synthase sub 53.3 1.4E+02 0.0031 25.4 12.2 95 101-206 41-136 (167)
384 smart00502 BBC B-Box C-termina 53.2 1E+02 0.0022 23.6 13.6 46 137-184 55-100 (127)
385 PRK13729 conjugal transfer pil 53.1 42 0.00091 34.3 6.8 27 116-142 81-107 (475)
386 COG5293 Predicted ATPase [Gene 53.1 2.9E+02 0.0063 28.9 13.7 74 113-187 337-410 (591)
387 PRK11546 zraP zinc resistance 53.0 52 0.0011 28.5 6.5 51 129-179 51-105 (143)
388 PRK06975 bifunctional uroporph 52.8 3E+02 0.0065 28.9 15.0 45 66-110 343-387 (656)
389 PF15254 CCDC14: Coiled-coil d 52.8 1.5E+02 0.0033 32.5 10.9 49 129-180 431-479 (861)
390 TIGR02977 phageshock_pspA phag 52.7 1.7E+02 0.0037 26.1 16.6 18 64-81 54-71 (219)
391 PF02841 GBP_C: Guanylate-bind 52.6 2E+02 0.0043 26.8 10.9 120 50-176 178-297 (297)
392 KOG1981 SOK1 kinase belonging 52.5 67 0.0015 33.2 8.1 62 151-217 213-279 (513)
393 PF14932 HAUS-augmin3: HAUS au 52.4 1.8E+02 0.004 26.7 10.4 97 65-165 71-169 (256)
394 PTZ00009 heat shock 70 kDa pro 52.4 2.9E+02 0.0064 28.7 13.7 20 162-181 566-585 (653)
395 PF04799 Fzo_mitofusin: fzo-li 52.1 70 0.0015 28.6 7.3 56 67-125 103-158 (171)
396 PLN02678 seryl-tRNA synthetase 52.0 1.3E+02 0.0027 30.5 9.9 26 190-215 77-102 (448)
397 PF05791 Bacillus_HBL: Bacillu 51.9 49 0.0011 29.0 6.3 53 121-173 124-180 (184)
398 PF14817 HAUS5: HAUS augmin-li 51.8 3.2E+02 0.007 29.0 18.0 134 68-217 303-436 (632)
399 KOG0999 Microtubule-associated 51.7 3.3E+02 0.0072 29.1 17.8 105 99-206 48-157 (772)
400 cd07599 BAR_Rvs167p The Bin/Am 51.4 1.7E+02 0.0037 25.7 13.4 139 37-176 5-169 (216)
401 PF01920 Prefoldin_2: Prefoldi 51.3 1.1E+02 0.0023 23.4 9.8 22 193-214 78-99 (106)
402 PF09731 Mitofilin: Mitochondr 51.2 2.8E+02 0.006 28.1 17.5 36 166-203 329-364 (582)
403 PLN02320 seryl-tRNA synthetase 51.1 1.1E+02 0.0024 31.4 9.5 24 118-141 100-123 (502)
404 KOG2391 Vacuolar sorting prote 51.0 95 0.0021 30.8 8.6 63 95-157 222-285 (365)
405 TIGR02449 conserved hypothetic 50.8 1.1E+02 0.0024 23.3 7.3 29 163-198 35-63 (65)
406 cd00176 SPEC Spectrin repeats, 50.7 1.3E+02 0.0029 24.3 14.5 27 63-89 41-67 (213)
407 PRK06231 F0F1 ATP synthase sub 50.6 1.9E+02 0.004 25.9 14.2 95 101-206 79-174 (205)
408 PRK10698 phage shock protein P 50.6 2E+02 0.0042 26.1 13.4 55 115-171 35-89 (222)
409 PF08172 CASP_C: CASP C termin 50.4 1.7E+02 0.0037 27.3 9.9 33 163-195 100-132 (248)
410 KOG0982 Centrosomal protein Nu 50.2 3.1E+02 0.0067 28.3 12.8 14 179-192 365-378 (502)
411 PF08898 DUF1843: Domain of un 50.1 35 0.00076 25.2 4.2 37 139-175 14-50 (53)
412 KOG2815 Mitochondrial/cholorop 49.9 59 0.0013 30.8 6.8 94 94-188 143-237 (256)
413 TIGR01069 mutS2 MutS2 family p 49.8 3.6E+02 0.0078 29.0 14.6 7 205-211 603-609 (771)
414 PF06156 DUF972: Protein of un 49.7 98 0.0021 25.4 7.3 48 133-183 9-56 (107)
415 PRK13455 F0F1 ATP synthase sub 49.6 1.7E+02 0.0037 25.2 12.2 94 102-206 59-153 (184)
416 PF10018 Med4: Vitamin-D-recep 49.2 1.3E+02 0.0028 26.4 8.5 20 191-210 77-96 (188)
417 PF07028 DUF1319: Protein of u 49.1 1.7E+02 0.0037 25.1 10.5 80 130-209 28-121 (126)
418 PRK05431 seryl-tRNA synthetase 49.1 1.5E+02 0.0033 29.3 9.9 32 118-149 28-59 (425)
419 PF07889 DUF1664: Protein of u 48.9 1.7E+02 0.0036 24.9 11.2 27 63-89 37-63 (126)
420 PF05794 Tcp11: T-complex prot 48.7 2.6E+02 0.0057 27.1 11.4 52 128-193 137-188 (441)
421 PRK13454 F0F1 ATP synthase sub 48.7 1.8E+02 0.004 25.3 12.8 50 102-151 63-113 (181)
422 PRK09973 putative outer membra 48.7 1.1E+02 0.0024 24.5 7.2 18 161-178 50-67 (85)
423 KOG0289 mRNA splicing factor [ 48.6 1.2E+02 0.0026 31.2 9.1 132 31-193 61-205 (506)
424 PF03961 DUF342: Protein of un 48.6 1E+02 0.0023 30.3 8.6 21 197-217 388-408 (451)
425 PF11068 YlqD: YlqD protein; 48.3 1.7E+02 0.0037 24.8 9.3 17 171-187 57-73 (131)
426 PRK07353 F0F1 ATP synthase sub 48.3 1.5E+02 0.0032 24.1 14.1 85 100-189 35-120 (140)
427 PF06005 DUF904: Protein of un 48.3 1.2E+02 0.0027 23.2 7.8 33 115-147 22-54 (72)
428 PF04880 NUDE_C: NUDE protein, 48.2 16 0.00035 32.3 2.7 39 91-129 4-42 (166)
429 PF13870 DUF4201: Domain of un 48.2 1.8E+02 0.0038 24.9 19.3 21 199-219 146-166 (177)
430 PF14735 HAUS4: HAUS augmin-li 48.0 2.3E+02 0.0051 26.3 13.5 127 48-180 85-226 (238)
431 PF15463 ECM11: Extracellular 47.8 1.4E+02 0.0031 25.0 8.2 50 121-170 83-133 (139)
432 PF04012 PspA_IM30: PspA/IM30 47.7 1.9E+02 0.0042 25.3 13.6 35 118-152 37-71 (221)
433 PF14966 DNA_repr_REX1B: DNA r 47.6 90 0.002 25.0 6.7 56 88-144 41-96 (97)
434 PF05465 Halo_GVPC: Halobacter 47.4 24 0.00053 23.2 2.8 23 158-180 1-23 (32)
435 PRK11281 hypothetical protein; 47.2 4.7E+02 0.01 29.6 18.7 44 69-112 135-181 (1113)
436 PRK09841 cryptic autophosphory 47.0 3.7E+02 0.008 28.3 14.1 50 153-213 336-385 (726)
437 PF10805 DUF2730: Protein of u 46.3 1.6E+02 0.0034 23.8 8.5 36 117-152 34-71 (106)
438 PF11705 RNA_pol_3_Rpc31: DNA- 46.2 55 0.0012 29.5 5.9 34 22-55 33-66 (233)
439 PF13094 CENP-Q: CENP-Q, a CEN 46.0 1.4E+02 0.003 25.2 8.0 42 108-149 38-79 (160)
440 PF13166 AAA_13: AAA domain 45.9 3.5E+02 0.0076 27.7 19.0 65 115-179 360-426 (712)
441 KOG2008 BTK-associated SH3-dom 45.7 3.2E+02 0.007 27.3 15.9 86 136-221 49-155 (426)
442 PF09006 Surfac_D-trimer: Lung 45.4 41 0.0009 24.2 3.9 28 158-185 1-28 (46)
443 KOG2176 Exocyst complex, subun 45.3 2.5E+02 0.0054 30.7 11.2 111 35-163 49-162 (800)
444 PF11598 COMP: Cartilage oligo 45.2 98 0.0021 22.0 5.7 23 159-181 18-40 (45)
445 KOG3647 Predicted coiled-coil 45.1 3E+02 0.0066 26.8 12.6 56 92-155 80-135 (338)
446 PHA02414 hypothetical protein 45.0 1E+02 0.0022 25.7 6.6 73 91-170 1-78 (111)
447 KOG4360 Uncharacterized coiled 44.5 4E+02 0.0088 28.1 12.6 99 73-177 202-303 (596)
448 PRK13922 rod shape-determining 44.4 1.1E+02 0.0023 27.9 7.6 39 136-181 73-111 (276)
449 PF14992 TMCO5: TMCO5 family 44.3 3E+02 0.0065 26.5 10.7 28 185-213 155-182 (280)
450 PRK14471 F0F1 ATP synthase sub 44.0 2E+02 0.0043 24.3 12.7 95 101-206 39-134 (164)
451 PRK08475 F0F1 ATP synthase sub 43.8 2.1E+02 0.0046 24.6 12.2 85 101-190 53-138 (167)
452 TIGR00998 8a0101 efflux pump m 43.8 2.6E+02 0.0056 25.6 13.3 76 142-220 125-201 (334)
453 PF03961 DUF342: Protein of un 43.6 2E+02 0.0043 28.4 9.7 25 65-89 330-354 (451)
454 PF04420 CHD5: CHD5-like prote 43.3 73 0.0016 27.4 5.9 58 152-218 36-93 (161)
455 PF08232 Striatin: Striatin fa 43.3 1.4E+02 0.003 25.2 7.4 36 86-121 17-52 (134)
456 PRK00888 ftsB cell division pr 43.2 46 0.001 26.9 4.4 9 119-127 35-43 (105)
457 PF04420 CHD5: CHD5-like prote 42.5 62 0.0013 27.9 5.4 35 146-180 63-97 (161)
458 PRK09465 tolC outer membrane c 42.3 3E+02 0.0065 26.0 11.7 47 106-152 162-208 (446)
459 KOG1962 B-cell receptor-associ 42.3 2.8E+02 0.0062 25.7 11.6 55 161-215 156-210 (216)
460 PRK14156 heat shock protein Gr 42.2 2.1E+02 0.0046 25.5 8.8 42 151-192 29-70 (177)
461 PF06785 UPF0242: Uncharacteri 42.1 3.7E+02 0.008 26.9 11.8 97 81-177 73-176 (401)
462 PHA01750 hypothetical protein 42.0 69 0.0015 24.9 4.9 36 114-149 38-73 (75)
463 TIGR02473 flagell_FliJ flagell 41.9 1.8E+02 0.0039 23.2 12.4 24 68-91 19-42 (141)
464 PF14257 DUF4349: Domain of un 41.9 1.3E+02 0.0029 27.2 7.7 57 160-221 136-192 (262)
465 PF08898 DUF1843: Domain of un 41.8 24 0.00051 26.1 2.3 18 203-220 36-53 (53)
466 KOG0921 Dosage compensation co 41.7 26 0.00057 39.0 3.5 23 157-179 1097-1119(1282)
467 PF07111 HCR: Alpha helical co 41.7 5E+02 0.011 28.3 20.9 138 41-182 66-216 (739)
468 cd07685 F-BAR_Fes The F-BAR (F 41.7 3.1E+02 0.0066 25.8 13.4 45 133-179 70-114 (237)
469 TIGR01730 RND_mfp RND family e 41.3 2.6E+02 0.0057 25.0 9.9 21 202-222 120-140 (322)
470 TIGR03545 conserved hypothetic 41.3 2.1E+02 0.0045 29.7 9.8 82 94-181 191-273 (555)
471 COG4238 Murein lipoprotein [Ce 41.2 75 0.0016 25.1 5.1 33 124-156 24-56 (78)
472 PLN02939 transferase, transfer 41.1 4.5E+02 0.0097 29.5 12.6 72 129-203 202-283 (977)
473 PF13747 DUF4164: Domain of un 41.0 1.8E+02 0.0039 23.0 8.3 32 121-152 35-66 (89)
474 PF05278 PEARLI-4: Arabidopsis 40.8 3.3E+02 0.0072 26.0 13.2 104 105-211 153-262 (269)
475 PF05761 5_nucleotid: 5' nucle 40.8 1E+02 0.0023 31.0 7.4 23 157-179 363-385 (448)
476 KOG3875 Peroxisomal biogenesis 40.7 29 0.00063 34.1 3.3 17 243-259 79-102 (362)
477 PF09763 Sec3_C: Exocyst compl 40.3 3.8E+02 0.0083 28.0 11.6 45 115-159 34-78 (701)
478 PRK10803 tol-pal system protei 40.2 1.7E+02 0.0037 27.1 8.2 29 153-181 51-79 (263)
479 KOG4572 Predicted DNA-binding 40.1 3.4E+02 0.0075 30.5 11.3 37 163-203 1092-1128(1424)
480 PF09969 DUF2203: Uncharacteri 39.9 2.2E+02 0.0048 23.7 8.7 91 155-251 19-115 (120)
481 PF13870 DUF4201: Domain of un 39.8 2.4E+02 0.0052 24.1 15.9 23 194-216 108-130 (177)
482 COG1344 FlgL Flagellin and rel 39.8 2.9E+02 0.0062 26.5 9.9 80 100-179 46-128 (360)
483 PF05130 FlgN: FlgN protein; 39.7 1.8E+02 0.0039 22.6 8.4 75 128-202 40-123 (143)
484 PRK13676 hypothetical protein; 39.7 2E+02 0.0042 23.0 8.3 32 97-129 3-34 (114)
485 PF08647 BRE1: BRE1 E3 ubiquit 39.4 1.9E+02 0.0041 22.8 11.1 25 125-149 3-27 (96)
486 PF14257 DUF4349: Domain of un 39.3 1.7E+02 0.0037 26.5 8.0 22 160-181 173-194 (262)
487 PF10205 KLRAQ: Predicted coil 39.2 2.2E+02 0.0048 23.5 9.0 75 58-153 1-75 (102)
488 cd00890 Prefoldin Prefoldin is 39.2 1.1E+02 0.0023 24.3 5.9 83 136-218 3-121 (129)
489 COG4371 Predicted membrane pro 39.1 32 0.00069 33.1 3.3 24 227-250 62-89 (334)
490 PF04977 DivIC: Septum formati 38.9 79 0.0017 22.9 4.8 43 110-152 16-58 (80)
491 TIGR02977 phageshock_pspA phag 38.9 2.9E+02 0.0062 24.7 13.1 27 119-145 39-65 (219)
492 PF05278 PEARLI-4: Arabidopsis 38.8 3.6E+02 0.0078 25.8 10.6 23 157-179 229-251 (269)
493 PF10191 COG7: Golgi complex c 38.7 3.3E+02 0.0072 29.2 11.1 40 141-180 86-125 (766)
494 PF08657 DASH_Spc34: DASH comp 38.7 93 0.002 29.2 6.3 44 157-200 174-217 (259)
495 PRK13460 F0F1 ATP synthase sub 38.3 2.6E+02 0.0055 24.0 12.7 92 96-192 42-134 (173)
496 PF14916 CCDC92: Coiled-coil d 38.3 81 0.0018 23.7 4.7 35 137-171 1-36 (60)
497 PF04912 Dynamitin: Dynamitin 38.3 3.8E+02 0.0082 26.0 16.2 151 69-220 209-383 (388)
498 TIGR03495 phage_LysB phage lys 38.2 2.6E+02 0.0056 24.0 10.4 73 114-189 22-94 (135)
499 TIGR00618 sbcc exonuclease Sbc 37.8 5.9E+02 0.013 28.0 21.8 177 41-218 270-472 (1042)
500 KOG3156 Uncharacterized membra 37.8 3.4E+02 0.0074 25.3 12.0 91 126-217 81-193 (220)
No 1
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.68 E-value=0.0092 Score=62.51 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 024699 193 KQAMENNLISMAREIEKLRAELLN 216 (264)
Q Consensus 193 ~qaMEknlismarEvEKLRaElan 216 (264)
...+.+++-.+..++.+++.++..
T Consensus 471 l~~~~~~l~~l~~~l~~l~~~~~~ 494 (1164)
T TIGR02169 471 LYDLKEEYDRVEKELSKLQRELAE 494 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444443
No 2
>PRK11637 AmiB activator; Provisional
Probab=97.66 E-value=0.042 Score=53.26 Aligned_cols=80 Identities=18% Similarity=0.224 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 024699 127 VQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMARE 206 (264)
Q Consensus 127 ~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarE 206 (264)
++.+...+++|..+.+.+..++..+....+.+-.-+++|+..+.|-+...+.++-+++.....+.+++.-++.|-..-.+
T Consensus 172 l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~ 251 (428)
T PRK11637 172 IAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIAR 251 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555666666666666666666666666666666666666666666655555444333
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.57 E-value=0.014 Score=61.08 Aligned_cols=51 Identities=18% Similarity=0.173 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhh
Q 024699 39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLR 89 (264)
Q Consensus 39 LEe~l~~Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ 89 (264)
++..+.....++..+-.....+-.....|++++...+.++..+...+..+.
T Consensus 292 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~ 342 (1164)
T TIGR02169 292 VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELE 342 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455554444444444444444444444444444444444333
No 4
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.57 E-value=0.023 Score=52.16 Aligned_cols=94 Identities=22% Similarity=0.306 Sum_probs=84.3
Q ss_pred cchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 62 DDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQI 141 (264)
Q Consensus 62 athvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qv 141 (264)
.....+..+|..+.+.|..+..-.+.+..+.+.-..++-+=-.|+|.+......+..|+..++.++......|-+|-.++
T Consensus 47 ~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i 126 (312)
T PF00038_consen 47 RIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQI 126 (312)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHH
Confidence 35666888899999999999998999999999888888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 024699 142 KGLTKDVNRLEAEN 155 (264)
Q Consensus 142 q~l~qeL~r~~ad~ 155 (264)
+.|..||.-+...-
T Consensus 127 ~~L~eEl~fl~~~h 140 (312)
T PF00038_consen 127 QSLKEELEFLKQNH 140 (312)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 99999998776543
No 5
>PRK09039 hypothetical protein; Validated
Probab=97.55 E-value=0.012 Score=56.39 Aligned_cols=147 Identities=20% Similarity=0.286 Sum_probs=101.5
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhHhhhhhH---HHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 65 THLQRELTASKDEIHRLGQIIPKLRADKE---AHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQI 141 (264)
Q Consensus 65 vaLrqeLaaaq~Elqrl~~~~~~l~ae~e---~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qv 141 (264)
.-|.++|...++||..|...|..+-.--. ...-.+=+++..+.+++.+.+..|++|..... .+.....++.+++
T Consensus 42 ~fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~---~~~~~~~~~~~~~ 118 (343)
T PRK09039 42 FFLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA---ELAGAGAAAEGRA 118 (343)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhhcchHHHHH
Confidence 46788888888888888888777552222 22234445555666666666666555554333 1222223445555
Q ss_pred HHHHHHHHHHH----HhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 024699 142 KGLTKDVNRLE----AENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISM----AREIEKLRAE 213 (264)
Q Consensus 142 q~l~qeL~r~~----ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlism----arEvEKLRaE 213 (264)
..+..+|...+ ....+|-.|+++|++||..|..+-++++.-+....+.-.+...+++.|-.. +.|++++|.+
T Consensus 119 ~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~ 198 (343)
T PRK09039 119 GELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSE 198 (343)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 55555554444 355678899999999999999999999999999999999999999988766 4577888888
Q ss_pred H
Q 024699 214 L 214 (264)
Q Consensus 214 l 214 (264)
+
T Consensus 199 ~ 199 (343)
T PRK09039 199 F 199 (343)
T ss_pred H
Confidence 7
No 6
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.11 E-value=0.098 Score=49.39 Aligned_cols=154 Identities=16% Similarity=0.302 Sum_probs=118.9
Q ss_pred HHHHHHhhHHHHH-HHhhhhhHhhhhhHHHHHH-HHHhhhhhHHhhhh-----chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 67 LQRELTASKDEIH-RLGQIIPKLRADKEAHTRE-LFDRGLKLEVELRA-----SEPVRAEVVQLRAEVQKLNSSRQELTT 139 (264)
Q Consensus 67 LrqeLaaaq~Elq-rl~~~~~~l~ae~e~q~R~-l~ek~~KmEAelra-----~e~lk~El~q~raE~q~L~~~RQeL~~ 139 (264)
|=+|-..+-.|++ -|......+++=.-++.+. -|+-..++.-.|+. .+.|+.|...+...++.|......|..
T Consensus 105 Lf~EY~~a~~d~r~~m~~q~~~vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~ 184 (325)
T PF08317_consen 105 LFREYYTADPDMRLLMDNQFQLVKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRE 184 (325)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443 3446666666555555443 35555666555544 378888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024699 140 QIKGLTKDVNRLEAENKQLIA-MRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTE 218 (264)
Q Consensus 140 qvq~l~qeL~r~~ad~qqipa-l~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElanae 218 (264)
..+.|..++..+++-...+.. =+.+|..+++||......|+.-|+.-.++-.+++..+..+-.+..+..+|.++|++++
T Consensus 185 ~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 185 RKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988887665542 3578899999999999999999999999999999999999999999999999999987
Q ss_pred hc
Q 024699 219 RR 220 (264)
Q Consensus 219 ~r 220 (264)
+.
T Consensus 265 ~~ 266 (325)
T PF08317_consen 265 KI 266 (325)
T ss_pred HH
Confidence 44
No 7
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=97.08 E-value=0.079 Score=45.43 Aligned_cols=111 Identities=23% Similarity=0.263 Sum_probs=81.7
Q ss_pred HHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Q 024699 99 LFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRA 178 (264)
Q Consensus 99 l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa 178 (264)
|-+++..||+||..++ .+...+-.|+..--+.-..|.+++..||+++.++..|+ ..++.|-+.|-++++.-..-
T Consensus 22 le~~v~~LEreLe~~q---~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL---~~l~sEk~~L~k~lq~~q~k 95 (140)
T PF10473_consen 22 LEDHVESLERELEMSQ---ENKECLILDAENSKAEIETLEEELEELTSELNQLELEL---DTLRSEKENLDKELQKKQEK 95 (140)
T ss_pred HHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3478888888776654 33444444555555555667788888888888888876 56678888888999988888
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHh
Q 024699 179 FEFEKKANEEQIEQKQAMENNLISMARE----IEKLRAELL 215 (264)
Q Consensus 179 ~EyEKk~~~e~~Eq~qaMEknlismarE----vEKLRaEla 215 (264)
|..-...+.+....++..|.-.+-|-.+ |+.|.+++.
T Consensus 96 v~eLE~~~~~~~~~l~~~E~ek~q~~e~~~~~ve~L~~ql~ 136 (140)
T PF10473_consen 96 VSELESLNSSLENLLQEKEQEKVQLKEESKSAVEMLQKQLK 136 (140)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888888888888887776655 777777653
No 8
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.04 E-value=0.14 Score=51.52 Aligned_cols=68 Identities=19% Similarity=0.343 Sum_probs=48.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------hHHHHHHHHHHHHHHHHHhhhhh
Q 024699 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ-----------LIAMRADIDGIRSELVEARRAFE 180 (264)
Q Consensus 113 ~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qq-----------ipal~aEie~lrqElqr~Raa~E 180 (264)
...++.||.++..++++....--.|...|..|..||.+.+.++.. |..|..||+.++.||.-+++...
T Consensus 283 l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~ 361 (522)
T PF05701_consen 283 LASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEE 361 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 567788888888888888888888888888888888887777654 45566666666666655555443
No 9
>PRK02224 chromosome segregation protein; Provisional
Probab=97.01 E-value=0.15 Score=53.20 Aligned_cols=38 Identities=24% Similarity=0.355 Sum_probs=14.7
Q ss_pred hhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 104 LKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQI 141 (264)
Q Consensus 104 ~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qv 141 (264)
..++..+...+.+..++..+...++++.....++..++
T Consensus 244 ~el~~~~~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i 281 (880)
T PRK02224 244 EEHEERREELETLEAEIEDLRETIAETEREREELAEEV 281 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444333333333333
No 10
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.99 E-value=0.15 Score=52.09 Aligned_cols=32 Identities=34% Similarity=0.388 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024699 186 NEEQIEQKQAMENNLISMAREIEKLRAELLNT 217 (264)
Q Consensus 186 ~~e~~Eq~qaMEknlismarEvEKLRaElana 217 (264)
+..+.+|++.++.-+-+--++++.|+.||..+
T Consensus 285 ~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~ 316 (546)
T PF07888_consen 285 NEALKEQLRSAQEQLQASQQEAELLRKELSDA 316 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888899999998765
No 11
>PRK11637 AmiB activator; Provisional
Probab=96.94 E-value=0.36 Score=46.87 Aligned_cols=61 Identities=16% Similarity=0.258 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 024699 128 QKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIE 191 (264)
Q Consensus 128 q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~E 191 (264)
..|+..++++..++....++|. ...+.+-.-+++++.+..++..-++.++-+++.....+.
T Consensus 162 ~~i~~~d~~~l~~l~~~~~~L~---~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~ 222 (428)
T PRK11637 162 GYLNQARQETIAELKQTREELA---AQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLT 222 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555544444444 333334455556666666666666666666655333333
No 12
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.87 E-value=0.066 Score=49.14 Aligned_cols=99 Identities=23% Similarity=0.363 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q 024699 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQK 193 (264)
Q Consensus 114 e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~ 193 (264)
..+..|+.++|..|..++..+..|..++..+..++..++..... ..+....|..|+..+|..++-+...+.++-.+.
T Consensus 50 ~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~---e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i 126 (312)
T PF00038_consen 50 EMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEE---ELAERKDLEEELESLRKDLDEETLARVDLENQI 126 (312)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHH
Confidence 34667777788888887777777777777777777766654433 356667777888888888888888888888888
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHh
Q 024699 194 QAMENNLISMAR----EIEKLRAELL 215 (264)
Q Consensus 194 qaMEknlismar----EvEKLRaEla 215 (264)
++++..|-.+.. ||.-|++.+.
T Consensus 127 ~~L~eEl~fl~~~heeEi~~L~~~~~ 152 (312)
T PF00038_consen 127 QSLKEELEFLKQNHEEEIEELREQIQ 152 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTT--
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 888887766654 4555655553
No 13
>PRK03918 chromosome segregation protein; Provisional
Probab=96.76 E-value=0.22 Score=51.66 Aligned_cols=73 Identities=22% Similarity=0.388 Sum_probs=37.6
Q ss_pred HhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 024699 101 DRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELV 173 (264)
Q Consensus 101 ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElq 173 (264)
+...+++.++...+..+.++..+..+++.|...-+.|..++..+.+++..+...+.++..+..+++.+...+.
T Consensus 221 ~~~~~~~~~l~~l~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~~~~~l~~~~~ 293 (880)
T PRK03918 221 EELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAE 293 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555555555555555555555555555555555555555555554444444333
No 14
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=96.75 E-value=0.25 Score=44.90 Aligned_cols=147 Identities=23% Similarity=0.357 Sum_probs=82.5
Q ss_pred hHHHHHHHHhhHHHHHHHhhhhhHhhhh----------hHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHH
Q 024699 64 NTHLQRELTASKDEIHRLGQIIPKLRAD----------KEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSS 133 (264)
Q Consensus 64 hvaLrqeLaaaq~Elqrl~~~~~~l~ae----------~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~ 133 (264)
..-|||.|-.+|-||-.=.+.|.++++- +|.++.++-+....-.. ..+....||.+...|+.-|--.
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~---ELE~ce~ELqr~~~Ea~lLrek 88 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQL---ELEVCENELQRKKNEAELLREK 88 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhH---hHHHhHHHHHHHhCHHHHhhhh
Confidence 3457777777777776555555555541 22333333332222222 1223445555555555554444
Q ss_pred HHHHHHHHHHHHHHHHHH------------------HH--hhhhhHHHHHHHHHHHHHHHHHh-------hhhhhhhhhh
Q 024699 134 RQELTTQIKGLTKDVNRL------------------EA--ENKQLIAMRADIDGIRSELVEAR-------RAFEFEKKAN 186 (264)
Q Consensus 134 RQeL~~qvq~l~qeL~r~------------------~a--d~qqipal~aEie~lrqElqr~R-------aa~EyEKk~~ 186 (264)
-..|..++..|...+..+ +. .-.-+..|+.++|.|+.||...| ..|+.|+..-
T Consensus 89 l~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q~~~Fe~ER~~W 168 (202)
T PF06818_consen 89 LGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQRSSFEQERRTW 168 (202)
T ss_pred hhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 444555555555555553 11 12236678888888888888654 5888888875
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 024699 187 EEQIEQK----QAMENNLISMAREIEKLRAE 213 (264)
Q Consensus 187 ~e~~Eq~----qaMEknlismarEvEKLRaE 213 (264)
.+--|.+ +-+-.|+|-|-+=-..|-.+
T Consensus 169 ~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~ 199 (202)
T PF06818_consen 169 QEEKEKVIRYQKQLQQNYVQMYQRNQALERE 199 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5443332 45667899887654444433
No 15
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.75 E-value=0.7 Score=48.56 Aligned_cols=178 Identities=19% Similarity=0.288 Sum_probs=107.1
Q ss_pred cccchHHHHHHHHhhHHHHHHHhhhhhHhhhh--hHHHHHHHHHhhhhh--------HHhhhh-----------------
Q 024699 60 AIDDNTHLQRELTASKDEIHRLGQIIPKLRAD--KEAHTRELFDRGLKL--------EVELRA----------------- 112 (264)
Q Consensus 60 LaathvaLrqeLaaaq~Elqrl~~~~~~l~ae--~e~q~R~l~ek~~Km--------EAelra----------------- 112 (264)
|-...-.||.||...++|...|..-+..|..- +|.+-...+||-++. |+.|.+
T Consensus 451 l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~ 530 (697)
T PF09726_consen 451 LTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALA 530 (697)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccc
Confidence 44445678888888888888877665555433 233334444444333 333321
Q ss_pred ---------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hh-hhhhHHHHHHHHHHHHHHHHHhhhh
Q 024699 113 ---------SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE---AE-NKQLIAMRADIDGIRSELVEARRAF 179 (264)
Q Consensus 113 ---------~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~---ad-~qqipal~aEie~lrqElqr~Raa~ 179 (264)
.|.+|.-..++..|+++|-..-+....++..|.+|++.++ .| .+-+.+|...|-.|+..-+|+=...
T Consensus 531 ~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sL 610 (697)
T PF09726_consen 531 QAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSL 610 (697)
T ss_pred cchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 1235555555555555555555555555555555554222 22 3346777777778888888888888
Q ss_pred hhhhhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCC-CCCCCCCCCCCCCCCC
Q 024699 180 EFEKKANEEQIE-------QKQAMENNLISMAREIEKLRAELLNTERRACGLG-GSAYGLLNGCPDMRYP 241 (264)
Q Consensus 180 EyEKk~~~e~~E-------q~qaMEknlismarEvEKLRaElanae~ra~~~~-g~~Yg~~yg~p~~~~~ 241 (264)
-.|.+.+.|+.. |+..-+.-+..=-+||.-|++.|+..-. +. +..|+++.+.+.-.|.
T Consensus 611 saEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a----v~p~~~~~~~~~~~~~~~~ 676 (697)
T PF09726_consen 611 SAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA----VMPSDSYCSAITPPTPHYS 676 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCccccccCCCCCCccch
Confidence 888888877753 6666677777777889999998876642 22 2355544443333443
No 16
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.73 E-value=0.15 Score=51.35 Aligned_cols=96 Identities=18% Similarity=0.304 Sum_probs=51.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----------HHH--------------HHHHHH
Q 024699 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL-----------IAM--------------RADIDG 167 (264)
Q Consensus 113 ~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqi-----------pal--------------~aEie~ 167 (264)
++.|+.||..+..++..|..--...+..|+.|..+|.+.++++.-+ ..| +.+.+.
T Consensus 311 vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~ 390 (522)
T PF05701_consen 311 VESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEE 390 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666665555555555555555555555555554221 111 222233
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024699 168 IRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELL 215 (264)
Q Consensus 168 lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaEla 215 (264)
++.|+..++..++- .--.+++||..|..+-+|++.-++--+
T Consensus 391 ~~~E~~~~k~E~e~-------~ka~i~t~E~rL~aa~ke~eaaKasEa 431 (522)
T PF05701_consen 391 AKEEVEKAKEEAEQ-------TKAAIKTAEERLEAALKEAEAAKASEA 431 (522)
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333322 223467889999999999888887533
No 17
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.67 E-value=0.051 Score=51.31 Aligned_cols=35 Identities=23% Similarity=0.417 Sum_probs=21.8
Q ss_pred ccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhH
Q 024699 59 HAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKE 93 (264)
Q Consensus 59 RLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e 93 (264)
-|...+..|++|.......+..+....+.+...++
T Consensus 153 ~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~ 187 (325)
T PF08317_consen 153 GLEENLELLQEDYAKLDKQLEQLDELLPKLRERKA 187 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666777777776666666666666654443
No 18
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.66 E-value=0.11 Score=54.34 Aligned_cols=29 Identities=28% Similarity=0.406 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKG 143 (264)
Q Consensus 115 ~lk~El~q~raE~q~L~~~RQeL~~qvq~ 143 (264)
.+|.||.|++.|...|..--++|+...|.
T Consensus 457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~ 485 (697)
T PF09726_consen 457 SLKSELSQLRQENEQLQNKLQNLVQARQQ 485 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555544444444444433
No 19
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=96.53 E-value=0.061 Score=44.89 Aligned_cols=72 Identities=21% Similarity=0.389 Sum_probs=60.5
Q ss_pred hhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 024699 105 KLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (264)
Q Consensus 105 KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 179 (264)
+|-+.||.. -.|+.+++.++.+|...|..|..++-.++.+...+++..++++.|+.+++.|.+.++-+--.|
T Consensus 20 ~L~s~lr~~---E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~Lell 91 (120)
T PF12325_consen 20 RLQSQLRRL---EGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELL 91 (120)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344545433 368999999999999999999999999999999999999999999999999998877665444
No 20
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=96.52 E-value=0.72 Score=43.14 Aligned_cols=62 Identities=16% Similarity=0.241 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 024699 161 MRADIDGIRSELVEARRAFEFEKKA-NEEQIEQKQAMENNLISMAREIEKLRAELLNTERRAC 222 (264)
Q Consensus 161 l~aEie~lrqElqr~Raa~EyEKk~-~~e~~Eq~qaMEknlismarEvEKLRaElanae~ra~ 222 (264)
++++++.+++++..+++.+.-.+.. ..+..++....+.++..+..+++.++..+.+..-+|+
T Consensus 215 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~~i~AP 277 (423)
T TIGR01843 215 LEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKARDRLQRLIIRSP 277 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEECC
Confidence 3344444444444444444333222 2223344556666666666667777777777666664
No 21
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.50 E-value=0.29 Score=54.06 Aligned_cols=62 Identities=16% Similarity=0.281 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHH---hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 024699 159 IAMRADIDGIRSELVEA---RRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERR 220 (264)
Q Consensus 159 pal~aEie~lrqElqr~---Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElanae~r 220 (264)
+.+..+.+.+..+|..+ -..+.-++-...+.+.+.+..+..|-.+..+++++++++...+..
T Consensus 846 e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~ 910 (1311)
T TIGR00606 846 ELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQ 910 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666 344444455555567777888888888888888888888776543
No 22
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.47 E-value=0.48 Score=51.82 Aligned_cols=32 Identities=22% Similarity=0.242 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024699 185 ANEEQIEQKQAMENNLISMAREIEKLRAELLN 216 (264)
Q Consensus 185 ~~~e~~Eq~qaMEknlismarEvEKLRaElan 216 (264)
...++.++....++.+.++..++.+++.+..+
T Consensus 857 ~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~ 888 (1163)
T COG1196 857 ELEELKEELEELEAEKEELEDELKELEEEKEE 888 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444333
No 23
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.47 E-value=0.49 Score=51.74 Aligned_cols=38 Identities=32% Similarity=0.575 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRL 151 (264)
Q Consensus 114 e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~ 151 (264)
+.++.++..+..++..+......|..+++.+..++.+.
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~ 416 (1163)
T COG1196 379 EALREELAELEAELAEIRNELEELKREIESLEERLERL 416 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433333
No 24
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=96.42 E-value=0.53 Score=46.03 Aligned_cols=25 Identities=12% Similarity=0.143 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhh
Q 024699 157 QLIAMRADIDGIRSELVEARRAFEF 181 (264)
Q Consensus 157 qipal~aEie~lrqElqr~Raa~Ey 181 (264)
.+..+..+|+.++.++..+++.+.-
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~~~ 261 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQKAG 261 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5667777888888888888777764
No 25
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.37 E-value=0.48 Score=53.59 Aligned_cols=158 Identities=16% Similarity=0.193 Sum_probs=118.5
Q ss_pred ccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHH--HHhh-----------hhhHHhhh----hchhHHHHHHHH
Q 024699 61 IDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTREL--FDRG-----------LKLEVELR----ASEPVRAEVVQL 123 (264)
Q Consensus 61 aathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l--~ek~-----------~KmEAelr----a~e~lk~El~q~ 123 (264)
..+|..|+++...+++..+.+.+.+-++.-=.+ .|.+ |+.+ -+++..|. ..+.++.++.++
T Consensus 934 p~~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~l~~~~~~~~~Le~~Le~iE~~~~~areql~qa 1011 (1486)
T PRK04863 934 PEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQ--RRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQA 1011 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhccHHHHHhHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999887776652111 1111 1111 11222111 234566777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH---------HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 024699 124 RAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIA---------MRADIDGIRSELVEARRAFEFEKKANEEQIEQKQ 194 (264)
Q Consensus 124 raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipa---------l~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~q 194 (264)
+.+.++....-..+...++.+.+.|..++.+++.++. .++.-|.|.+.|...|+-..+--|.....-..++
T Consensus 1012 q~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~re~EIe 1091 (1486)
T PRK04863 1012 QAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHARLSANRSRRNQLEKQLTFCEAEMD 1091 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777888888888888888888887752 3334489999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhc
Q 024699 195 AMENNLISMAREIEKLRAELLNTERR 220 (264)
Q Consensus 195 aMEknlismarEvEKLRaElanae~r 220 (264)
.++++|-...++...++++|.++..+
T Consensus 1092 ~L~kkL~~~~~e~~~~re~I~~aK~~ 1117 (1486)
T PRK04863 1092 NLTKKLRKLERDYHEMREQVVNAKAG 1117 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998654
No 26
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.34 E-value=1.1 Score=44.76 Aligned_cols=154 Identities=19% Similarity=0.285 Sum_probs=91.8
Q ss_pred HHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHH----HH
Q 024699 48 REMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVV----QL 123 (264)
Q Consensus 48 ~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~----q~ 123 (264)
.|++.-..|-+-.-..-.++++++..|+||+.++.....+++++ +--|.+.-.++|+++.+.-+=.++|+ |+
T Consensus 109 ~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtr----l~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Ql 184 (499)
T COG4372 109 SELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTR----LKTLAEQRRQLEAQAQSLQASQKQLQASATQL 184 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555566788999999999999999999998854 56688889999998888655555554 33
Q ss_pred HHHHHHHHHH-------HHHHH---HHHHHHHHHHHHHHHhhhhhHHHHHH----HHHHHHHHHHHhhhhhhhhhhhHHH
Q 024699 124 RAEVQKLNSS-------RQELT---TQIKGLTKDVNRLEAENKQLIAMRAD----IDGIRSELVEARRAFEFEKKANEEQ 189 (264)
Q Consensus 124 raE~q~L~~~-------RQeL~---~qvq~l~qeL~r~~ad~qqipal~aE----ie~lrqElqr~Raa~EyEKk~~~e~ 189 (264)
..+++.|... -++|. ..+|..++||++..+-.||...-... |+..-+++- +|+ .--.+.
T Consensus 185 k~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~ia-ar~------e~I~~r 257 (499)
T COG4372 185 KSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIA-ARA------EQIRER 257 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHH------HHHHHH
Confidence 3333333221 11221 23455777777776666655433222 222222221 111 111233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024699 190 IEQKQAMENNLISMAREIEKLRA 212 (264)
Q Consensus 190 ~Eq~qaMEknlismarEvEKLRa 212 (264)
-++.|..|.-..-+-+||+.|.+
T Consensus 258 e~~lq~lEt~q~~leqeva~le~ 280 (499)
T COG4372 258 ERQLQRLETAQARLEQEVAQLEA 280 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777777766654
No 27
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.32 E-value=0.5 Score=39.22 Aligned_cols=123 Identities=24% Similarity=0.261 Sum_probs=72.0
Q ss_pred HHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 67 LQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTK 146 (264)
Q Consensus 67 LrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~q 146 (264)
|+-++..+...+......+..++.|-+.+..-.-+-=-|-|.||-.+...-++|.+++.++..+.....+|...++....
T Consensus 8 l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~ 87 (132)
T PF07926_consen 8 LQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKA 87 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444455555555555555544444445566666666555566777777777766666666666666666
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Q 024699 147 DVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQA 195 (264)
Q Consensus 147 eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qa 195 (264)
.|....... ..+-..|..|+.-+..-|+.-.+-|.=+..|+..
T Consensus 88 ~l~~~e~sw------~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 88 ELEESEASW------EEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 665544432 3444556666666666666666666666666543
No 28
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.31 E-value=0.5 Score=43.84 Aligned_cols=131 Identities=20% Similarity=0.310 Sum_probs=80.8
Q ss_pred HhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhH----------HHHHHHHHhhhhhHHhhhhchhHHH
Q 024699 49 EMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKE----------AHTRELFDRGLKLEVELRASEPVRA 118 (264)
Q Consensus 49 EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e----------~q~R~l~ek~~KmEAelra~e~lk~ 118 (264)
.||.|-..+-||..-.--.+.+|..++-|+-+++....+++.+.| ..++++=+|+.+.|-.+-++--. .
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~-~ 89 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDE-R 89 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH-H
Confidence 344555556666655556667777777777777777666665554 45566666666666666333333 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhh
Q 024699 119 EVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEK 183 (264)
Q Consensus 119 El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEK 183 (264)
|+.++..|++.+..-.-.|..++..+..++.+++.. +-.++..+..+...+--++..++.+=
T Consensus 90 e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~---i~~l~~~~~~~e~~~~e~~~~~e~e~ 151 (239)
T COG1579 90 ELRALNIEIQIAKERINSLEDELAELMEEIEKLEKE---IEDLKERLERLEKNLAEAEARLEEEV 151 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777666666666666666666655432 34555555666666666666655543
No 29
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.26 E-value=0.28 Score=50.40 Aligned_cols=150 Identities=19% Similarity=0.316 Sum_probs=111.2
Q ss_pred cchHHHHHHHHhh-HHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 62 DDNTHLQRELTAS-KDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQ 140 (264)
Q Consensus 62 athvaLrqeLaaa-q~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~q 140 (264)
+.--.+-+||... .+..+.++..|.+++ .+-++|++++.-.|++=...+.++..-.-++.|+.++.++=..+..+
T Consensus 213 d~~~~~~~Elk~~l~~~~~~i~~~ie~l~----~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k 288 (581)
T KOG0995|consen 213 DNSSELEDELKHRLEKYFTSIANEIEDLK----KTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSK 288 (581)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 3333444554432 222333444444444 56788888888777777777899888888999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhh
Q 024699 141 IKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQK----QAMENNLISMAREIEKLRAELLN 216 (264)
Q Consensus 141 vq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~----qaMEknlismarEvEKLRaElan 216 (264)
.+.+.+.|.+++++. -....|++.|+++...++.-||.- +-..+-+++| +..+++|.-|..++++|+-++=+
T Consensus 289 ~~~~~~~l~~l~~Ei---e~kEeE~e~lq~~~d~Lk~~Ie~Q-~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~ 364 (581)
T KOG0995|consen 289 KQHMEKKLEMLKSEI---EEKEEEIEKLQKENDELKKQIELQ-GISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWE 364 (581)
T ss_pred hHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999886 456688999999999999998875 5555666654 56778888888888888877655
Q ss_pred hhh
Q 024699 217 TER 219 (264)
Q Consensus 217 ae~ 219 (264)
.+-
T Consensus 365 ~~l 367 (581)
T KOG0995|consen 365 LKL 367 (581)
T ss_pred HHH
Confidence 543
No 30
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.25 E-value=0.56 Score=54.22 Aligned_cols=134 Identities=23% Similarity=0.268 Sum_probs=89.7
Q ss_pred hhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHH
Q 024699 51 HRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKL 130 (264)
Q Consensus 51 qrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L 130 (264)
...-.-|-.|=-+...|+||+..+.-|+++..+.+..+..-.-.----|.+.-.++|.=....+....|+.+...++++|
T Consensus 1396 e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl 1475 (1930)
T KOG0161|consen 1396 EAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKL 1475 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33334444555567778888888888888887666655432222111222222233332334456677777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 024699 131 NSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKK 184 (264)
Q Consensus 131 ~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk 184 (264)
...=.++..++..+..+-..++.++..+..-..|...-.+|++..+.+++.||.
T Consensus 1476 ~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~ 1529 (1930)
T KOG0161|consen 1476 KNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKE 1529 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888743
No 31
>PRK02224 chromosome segregation protein; Provisional
Probab=96.22 E-value=0.53 Score=49.14 Aligned_cols=19 Identities=11% Similarity=0.087 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHhhhhcccc
Q 024699 39 LEEEIEIQRREMHRIISEN 57 (264)
Q Consensus 39 LEe~l~~Q~~EiqrLl~dN 57 (264)
+-..+..|..++.+.+.+-
T Consensus 181 ~~~~~~~~~~~~~~~l~~~ 199 (880)
T PRK02224 181 VLSDQRGSLDQLKAQIEEK 199 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555554444444
No 32
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.19 E-value=0.63 Score=51.50 Aligned_cols=55 Identities=9% Similarity=0.228 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 024699 166 DGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRAC 222 (264)
Q Consensus 166 e~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElanae~ra~ 222 (264)
..+.+|+..++..+.--+..++.++.+++.++.++-.+-.|++. .+..|++++.+
T Consensus 1050 ~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e--~~yk~a~~ryr 1104 (1311)
T TIGR00606 1050 LQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE--PQFRDAEEKYR 1104 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--hHHHHHHHHHH
Confidence 56677777777777777788899999999999999999999855 56667766654
No 33
>PRK03918 chromosome segregation protein; Provisional
Probab=96.18 E-value=0.86 Score=47.40 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHh
Q 024699 202 SMAREIEKLRAELL 215 (264)
Q Consensus 202 smarEvEKLRaEla 215 (264)
....++.+|++++.
T Consensus 402 ~l~~~i~~l~~~~~ 415 (880)
T PRK03918 402 EIEEEISKITARIG 415 (880)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 34
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.16 E-value=0.58 Score=49.82 Aligned_cols=90 Identities=26% Similarity=0.302 Sum_probs=71.5
Q ss_pred HHHHHHHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhh--------------------hhHhhhhhHHHHHHHHHh
Q 024699 43 IEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQI--------------------IPKLRADKEAHTRELFDR 102 (264)
Q Consensus 43 l~~Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~--------------------~~~l~ae~e~q~R~l~ek 102 (264)
+..-..+.+.+-.+|+++..+--+|+.+| -++.|+.+|.+. +..+.+|+|.+.+++..-
T Consensus 55 l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~l 133 (775)
T PF10174_consen 55 LSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRELERL 133 (775)
T ss_pred HHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456678888899999999999999999 999999998875 455678888888887766
Q ss_pred hhhhHHhhhhchhHHHHHHHHHHHHHHHHHH
Q 024699 103 GLKLEVELRASEPVRAEVVQLRAEVQKLNSS 133 (264)
Q Consensus 103 ~~KmEAelra~e~lk~El~q~raE~q~L~~~ 133 (264)
..++|.-=--.+.+++++.....+|.+|...
T Consensus 134 r~~lE~~q~~~e~~q~~l~~~~eei~kL~e~ 164 (775)
T PF10174_consen 134 RKTLEELQLRIETQQQTLDKADEEIEKLQEM 164 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666554446688888999888888888774
No 35
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.07 E-value=0.91 Score=46.64 Aligned_cols=77 Identities=18% Similarity=0.317 Sum_probs=48.9
Q ss_pred hhhHHHHHHHHHHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhH--------------hhhhhH---HHHHHH
Q 024699 37 MTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPK--------------LRADKE---AHTREL 99 (264)
Q Consensus 37 ~~LEe~l~~Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~--------------l~ae~e---~q~R~l 99 (264)
.+|+.+++.-..|-..|+..|..|-..-..|+.++...+.+|......... +..|++ .+.-++
T Consensus 139 ~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~ 218 (546)
T PF07888_consen 139 QLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEA 218 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888888778888898888888777777766666666555444333332 233333 334445
Q ss_pred HHhhhhhHHhhhhc
Q 024699 100 FDRGLKLEVELRAS 113 (264)
Q Consensus 100 ~ek~~KmEAelra~ 113 (264)
.+++.++|.++.+.
T Consensus 219 ~~ri~~LEedi~~l 232 (546)
T PF07888_consen 219 RQRIRELEEDIKTL 232 (546)
T ss_pred HHHHHHHHHHHHHH
Confidence 66667777666543
No 36
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.72 E-value=1.6 Score=43.06 Aligned_cols=12 Identities=17% Similarity=0.365 Sum_probs=4.6
Q ss_pred HHHHHhhhhhHH
Q 024699 97 RELFDRGLKLEV 108 (264)
Q Consensus 97 R~l~ek~~KmEA 108 (264)
-++..+...++.
T Consensus 223 ~~l~~~~~~l~~ 234 (562)
T PHA02562 223 DELVEEAKTIKA 234 (562)
T ss_pred HHHHHHHHHHHH
Confidence 333333334433
No 37
>PF13514 AAA_27: AAA domain
Probab=95.71 E-value=2.3 Score=46.38 Aligned_cols=135 Identities=19% Similarity=0.304 Sum_probs=88.2
Q ss_pred HHHHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhH-----HHHHHHHHhhhhhHHhhhhc-------
Q 024699 46 QRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKE-----AHTRELFDRGLKLEVELRAS------- 113 (264)
Q Consensus 46 Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e-----~q~R~l~ek~~KmEAelra~------- 113 (264)
+..++++=+.+..--+.+...|++++..++++++.+...+..++.+.. .++..++.....++++|-..
T Consensus 158 ~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~p~~~~~~~l~~~l~~l~~~~~~p 237 (1111)
T PF13514_consen 158 ELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAWPLLAELQQLEAELAELGEVPDFP 237 (1111)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCcCCCC
Confidence 344444445555556677888888999999999988888888887766 55566777777777776632
Q ss_pred --------------hhHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 024699 114 --------------EPVRAEVVQLRAEVQKLNSSRQE---------LTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRS 170 (264)
Q Consensus 114 --------------e~lk~El~q~raE~q~L~~~RQe---------L~~qvq~l~qeL~r~~ad~qqipal~aEie~lrq 170 (264)
..+..++..+..++..|....+. ....|..|.+.+.......+.+|.+..++..++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~~~~~~~~~~~dl~~~~~e~~~~~~ 317 (1111)
T PF13514_consen 238 EDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEALEEQRGEYRKARQDLPRLEAELAELEA 317 (1111)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12223333333333333333322 2234445666667777778888999999988888
Q ss_pred HHHHHhhhhh
Q 024699 171 ELVEARRAFE 180 (264)
Q Consensus 171 Elqr~Raa~E 180 (264)
++..+-+.+.
T Consensus 318 ~~~~~~~~lg 327 (1111)
T PF13514_consen 318 ELRALLAQLG 327 (1111)
T ss_pred HHHHHHHhcC
Confidence 8888777766
No 38
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=95.65 E-value=0.43 Score=41.38 Aligned_cols=40 Identities=10% Similarity=0.241 Sum_probs=22.0
Q ss_pred hhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhH
Q 024699 51 HRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKE 93 (264)
Q Consensus 51 qrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e 93 (264)
..++.+|-..+.+.++-+.++... ...+.+.+..+++|-.
T Consensus 29 ~~~l~~~~~~~~~~~vtk~d~e~~---~~~~~a~~~eLr~el~ 68 (177)
T PF07798_consen 29 REVLNDSLEKVAQDLVTKSDLENQ---EYLFKAAIAELRSELQ 68 (177)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 345566655555556666665543 3344566666775543
No 39
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.53 E-value=1.5 Score=44.49 Aligned_cols=163 Identities=17% Similarity=0.256 Sum_probs=95.9
Q ss_pred cccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhH-HHHHHHHHhhhh----hHHhhhhchhHHHHHHHHHHHHHHHHH
Q 024699 58 RHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKE-AHTRELFDRGLK----LEVELRASEPVRAEVVQLRAEVQKLNS 132 (264)
Q Consensus 58 qRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e-~q~R~l~ek~~K----mEAelra~e~lk~El~q~raE~q~L~~ 132 (264)
+...-+|..+-.+|...+..|......+..+.-+.= ..+..+-+++-. ||.|+.|..-+......+...+..+..
T Consensus 245 ~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e 324 (569)
T PRK04778 245 EGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKE 324 (569)
T ss_pred cCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 567778888999999999999998777777765442 333333333333 344455555554544444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-------HHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 024699 133 SRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRS-------ELVEARRAFEFEKKANEEQIEQKQAMENNLISMAR 205 (264)
Q Consensus 133 ~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrq-------Elqr~Raa~EyEKk~~~e~~Eq~qaMEknlismar 205 (264)
.-++|..+++.+.+...-...|+..+-.+..+|+.+.. .+......|..-++...++.++...+++....+..
T Consensus 325 ~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e 404 (569)
T PRK04778 325 QNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSE 404 (569)
T ss_pred HHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555554444322222334444444444444444 44444445555556667777777788888888888
Q ss_pred HHHHHHHHHhhhhhc
Q 024699 206 EIEKLRAELLNTERR 220 (264)
Q Consensus 206 EvEKLRaElanae~r 220 (264)
.|..||.+...+.+.
T Consensus 405 ~l~~Lrk~E~eAr~k 419 (569)
T PRK04778 405 MLQGLRKDELEAREK 419 (569)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888877666443
No 40
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=95.52 E-value=0.69 Score=39.72 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=19.1
Q ss_pred cccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhH
Q 024699 58 RHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKE 93 (264)
Q Consensus 58 qRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e 93 (264)
.++...-..+.+.|...++|+..+...+..+..+-+
T Consensus 77 ~~~~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~ 112 (191)
T PF04156_consen 77 PRLQGELSELQQQLQQLQEELDQLQERIQELESELE 112 (191)
T ss_pred hhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445556666666666666555555554333
No 41
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=95.47 E-value=1.1 Score=45.60 Aligned_cols=174 Identities=15% Similarity=0.239 Sum_probs=125.5
Q ss_pred hHHHHHHHHHHhhh----hcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhH--------HHHHHHHHhhhhh
Q 024699 39 LEEEIEIQRREMHR----IISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKE--------AHTRELFDRGLKL 106 (264)
Q Consensus 39 LEe~l~~Q~~Eiqr----Ll~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e--------~q~R~l~ek~~Km 106 (264)
+...+-.|-.|++. +.. +.+.-.|..+-.+|...+..|..+...+..+.-+.= .+|-.||+ .|
T Consensus 220 l~~~~P~ql~eL~~gy~~m~~--~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd---~l 294 (560)
T PF06160_consen 220 LQKEFPDQLEELKEGYREMEE--EGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYD---IL 294 (560)
T ss_pred HHHHhHHHHHHHHHHHHHHHH--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH---HH
Confidence 34455566666543 333 446777888999999999999888888877654432 23333333 46
Q ss_pred HHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 024699 107 EVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKAN 186 (264)
Q Consensus 107 EAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~ 186 (264)
|.|+.|...+...+..+..-+..+...-++|..++..+.+--.=...+...+-.+..+|+.+...+......++..+..+
T Consensus 295 e~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~y 374 (560)
T PF06160_consen 295 EKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPY 374 (560)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCH
Confidence 78888888888888777777777777667777766666665544456788888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024699 187 EEQIEQKQAMENNLISMAREIEKLRAELLNT 217 (264)
Q Consensus 187 ~e~~Eq~qaMEknlismarEvEKLRaElana 217 (264)
.+..+.++.+.++|-.+-.+..++...|.+.
T Consensus 375 S~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L 405 (560)
T PF06160_consen 375 SEIQEELEEIEEQLEEIEEEQEEINESLQSL 405 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888777777655555555443
No 42
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.39 E-value=1.8 Score=42.62 Aligned_cols=52 Identities=12% Similarity=0.286 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Q 024699 126 EVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARR 177 (264)
Q Consensus 126 E~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Ra 177 (264)
.+..|...+.+|..++..+...+..++....++-.+...+..++.++...|.
T Consensus 300 ~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~ 351 (562)
T PHA02562 300 RITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQ 351 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443333333333333333333333333333
No 43
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.38 E-value=0.53 Score=39.35 Aligned_cols=82 Identities=20% Similarity=0.347 Sum_probs=66.0
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 024699 111 RASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQI 190 (264)
Q Consensus 111 ra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~ 190 (264)
..++-|...|.+..+|+..|...-..|..+-..+++||.++-..+..+-+...+++.|+.|+..+..-++--=-..-|..
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~ 95 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKS 95 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 45678999999999999999999999999999999999999999999989999999999998877765543333333444
Q ss_pred HH
Q 024699 191 EQ 192 (264)
Q Consensus 191 Eq 192 (264)
|+
T Consensus 96 E~ 97 (120)
T PF12325_consen 96 EE 97 (120)
T ss_pred HH
Confidence 43
No 44
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.34 E-value=2 Score=44.63 Aligned_cols=149 Identities=18% Similarity=0.288 Sum_probs=88.9
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhHhhhhhHH---HHHHHHHhhhhhHHhhhhch------hHHHHHHHHHHHHHHHHHHHH
Q 024699 65 THLQRELTASKDEIHRLGQIIPKLRADKEA---HTRELFDRGLKLEVELRASE------PVRAEVVQLRAEVQKLNSSRQ 135 (264)
Q Consensus 65 vaLrqeLaaaq~Elqrl~~~~~~l~ae~e~---q~R~l~ek~~KmEAelra~e------~lk~El~q~raE~q~L~~~RQ 135 (264)
..|+.+-+..++.++-|+.-+..++.|++. +|.+|=..+.+|...+.... .....-.++..|++.|.....
T Consensus 18 ~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE 97 (617)
T PF15070_consen 18 QQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELE 97 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHH
Confidence 458888889999999999999999999984 44555566666665544221 011112355666666655555
Q ss_pred HHHHHHHHHHHH---HHHHH-HhhhhhHHHH----------HHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 024699 136 ELTTQIKGLTKD---VNRLE-AENKQLIAMR----------ADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLI 201 (264)
Q Consensus 136 eL~~qvq~l~qe---L~r~~-ad~qqipal~----------aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknli 201 (264)
.|.++++....+ |.++. .--.+|-.+. .+...|-..++.-++++.---.-|.++-+|+..|+..+|
T Consensus 98 ~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv 177 (617)
T PF15070_consen 98 SLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFV 177 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 566555554322 22221 1112233332 223333334444444444444568899999999999999
Q ss_pred HHHHH----HHHHHHH
Q 024699 202 SMARE----IEKLRAE 213 (264)
Q Consensus 202 smarE----vEKLRaE 213 (264)
.|..| ..+|-+|
T Consensus 178 ~ltne~~elt~~lq~E 193 (617)
T PF15070_consen 178 KLTNENMELTSALQSE 193 (617)
T ss_pred HHHHhhhHhhHHHHHH
Confidence 99888 4555544
No 45
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.31 E-value=2 Score=44.28 Aligned_cols=54 Identities=24% Similarity=0.322 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q 024699 159 IAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMA----REIEKLRA 212 (264)
Q Consensus 159 pal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisma----rEvEKLRa 212 (264)
--|++|+..|+.+|.++|..++-|.-.+.++.-+.|.+.+.|--|- .||.-++.
T Consensus 172 ~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~ 229 (546)
T KOG0977|consen 172 KRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERR 229 (546)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 5678899999999999999999999999999999999999998887 45655554
No 46
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.29 E-value=2.1 Score=39.79 Aligned_cols=132 Identities=22% Similarity=0.237 Sum_probs=68.2
Q ss_pred HHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 71 LTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNR 150 (264)
Q Consensus 71 Laaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r 150 (264)
|+....++-++..-+..++.+-+..--++-.....+++=--+.+.|+.++-+...|++++..-...+..+....+. ...
T Consensus 12 iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~-~~e 90 (239)
T COG1579 12 IQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKD-ERE 90 (239)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHH
Confidence 3344444444444444433333322222222333333333344456666666666666665555555444422221 112
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 024699 151 LEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISM 203 (264)
Q Consensus 151 ~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlism 203 (264)
..+=..-+..++..+.+|..||.++.-.++.-.+--.+..+....+|+|+...
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~ 143 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEA 143 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222233444455566677777777777766677777777888888877644
No 47
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.28 E-value=2.6 Score=39.45 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 024699 194 QAMENNLISMAREIEKLRAELLNTERR 220 (264)
Q Consensus 194 qaMEknlismarEvEKLRaElanae~r 220 (264)
...+..+..+..++.++++++..++..
T Consensus 242 ~~~~~~l~~~~~~l~~~~~~l~~~~~~ 268 (423)
T TIGR01843 242 EEVLEELTEAQARLAELRERLNKARDR 268 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566667777788777776543
No 48
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=95.16 E-value=1.9 Score=37.39 Aligned_cols=17 Identities=29% Similarity=0.475 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHhhhh
Q 024699 202 SMAREIEKLRAELLNTE 218 (264)
Q Consensus 202 smarEvEKLRaElanae 218 (264)
.+..||..||++|+++.
T Consensus 135 ki~~ei~~lr~~iE~~K 151 (177)
T PF07798_consen 135 KIDTEIANLRTEIESLK 151 (177)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45667778888888653
No 49
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.06 E-value=1.3 Score=43.41 Aligned_cols=50 Identities=16% Similarity=0.330 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 024699 131 NSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (264)
Q Consensus 131 ~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~E 180 (264)
.+....|..++..+.+++++++.+.+++|....|+..|..|+.-.+..|+
T Consensus 323 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~ 372 (498)
T TIGR03007 323 EAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYE 372 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555555666666666666666666666555555554443
No 50
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=95.05 E-value=4.6 Score=42.88 Aligned_cols=173 Identities=22% Similarity=0.309 Sum_probs=89.5
Q ss_pred CCCchhhHHHHHHHHHHh----hhhccccc------cc--ccchHHHH--HHHHhhH-HHHHHHhhhhhHhhhhhHHHHH
Q 024699 33 HFHPMTLEEEIEIQRREM----HRIISENR------HA--IDDNTHLQ--RELTASK-DEIHRLGQIIPKLRADKEAHTR 97 (264)
Q Consensus 33 pp~P~~LEe~l~~Q~~Ei----qrLl~dNq------RL--aathvaLr--qeLaaaq-~Elqrl~~~~~~l~ae~e~q~R 97 (264)
|.|-.++|-+...|+--+ +...+|-+ |- ...-.+|. -||..-| |||+||-.-...++.-.-.|-.
T Consensus 15 ~~~~~~~e~r~~~qr~~~~~~e~~~~~~~~~p~~r~Rs~~~~~s~~lsqqaelis~qlqE~rrle~e~~~lre~sl~qkm 94 (739)
T PF07111_consen 15 PAHQDVSERRRENQRPQVTMWEQDVSGDGQEPGRRGRSLELEGSQALSQQAELISRQLQELRRLEEEVRALRETSLQQKM 94 (739)
T ss_pred ccchhHHHhhhhhcCchhHHHHhcccccccCcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788888877776221 11222222 11 11222344 4666666 9999998877777644333444
Q ss_pred HHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Q 024699 98 ELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARR 177 (264)
Q Consensus 98 ~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Ra 177 (264)
-|--.++-||+--++-.+-++|...+++=+-+-...|+-|- ++..++|..++..= +.+|..|.++++.+=+
T Consensus 95 rLe~qa~Ele~l~~ae~agraEae~Lraala~ae~~R~~lE---E~~q~ELee~q~~H------qeql~~Lt~aHq~~l~ 165 (739)
T PF07111_consen 95 RLEAQAEELEALARAEKAGRAEAEELRAALAGAEVVRKNLE---EGSQRELEEAQRLH------QEQLSSLTQAHQEALA 165 (739)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhH---HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 44444444444444444445555555544444444555553 22333443333222 2567777777765433
Q ss_pred hhhhhhhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhh
Q 024699 178 AFEFEKKANEEQIEQKQAM-------ENNLISMAREIEKLRAELLNT 217 (264)
Q Consensus 178 a~EyEKk~~~e~~Eq~qaM-------EknlismarEvEKLRaElana 217 (264)
.+ ++..-++.+.++.| -|+|...-+|.+-||.+|.++
T Consensus 166 sL---~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~ 209 (739)
T PF07111_consen 166 SL---TSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKT 209 (739)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22 12222233333333 356777777888888888776
No 51
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=94.88 E-value=1.5 Score=44.05 Aligned_cols=84 Identities=19% Similarity=0.256 Sum_probs=49.9
Q ss_pred hHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhh------chhHHHHHHHHHHHHHHHHHHHHHH
Q 024699 64 NTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRA------SEPVRAEVVQLRAEVQKLNSSRQEL 137 (264)
Q Consensus 64 hvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra------~e~lk~El~q~raE~q~L~~~RQeL 137 (264)
.-.++.++...++|+.--..-...+-..+|.-|-.|=.++.. -.+.. .+.++.|...++.|++.|...-+.|
T Consensus 223 l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~--~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l 300 (511)
T PF09787_consen 223 LELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLE--EGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQL 300 (511)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc--cccccccchhcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555544455555666555555553333 11222 4678888888888888888777777
Q ss_pred HHHHHHHHHHHH
Q 024699 138 TTQIKGLTKDVN 149 (264)
Q Consensus 138 ~~qvq~l~qeL~ 149 (264)
..+++.+..++.
T Consensus 301 ~~e~~d~e~~~~ 312 (511)
T PF09787_consen 301 RAELQDLEAQLE 312 (511)
T ss_pred HHHHHHHHHHHH
Confidence 777766555544
No 52
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=94.86 E-value=3.8 Score=39.14 Aligned_cols=111 Identities=18% Similarity=0.245 Sum_probs=74.1
Q ss_pred chHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 63 DNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIK 142 (264)
Q Consensus 63 thvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq 142 (264)
-|..++|....++.|+.-...--..+.+|-|.|+-.+-.+..+++++.. -|+-|+.... .++...+-+.-.++.
T Consensus 21 l~~~ykq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nq---rl~~E~e~~K---ek~e~q~~q~y~q~s 94 (333)
T KOG1853|consen 21 LHHEYKQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQ---RLTTEQERNK---EKQEDQRVQFYQQES 94 (333)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 3778899999999999999988899999999888888888888887432 3333333221 133344444445566
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 024699 143 GLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (264)
Q Consensus 143 ~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 179 (264)
.|..||.+.++-..|+-.-..||+-.--.|-++..+-
T Consensus 95 ~Leddlsqt~aikeql~kyiReLEQaNDdLErakRat 131 (333)
T KOG1853|consen 95 QLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRAT 131 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhh
Confidence 6777777666666666666666665555555554443
No 53
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.84 E-value=0.98 Score=43.09 Aligned_cols=108 Identities=20% Similarity=0.242 Sum_probs=51.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------hhhhHHHHHHHHHHHHH
Q 024699 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE----------------------NKQLIAMRADIDGIRSE 171 (264)
Q Consensus 114 e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad----------------------~qqipal~aEie~lrqE 171 (264)
+.|+.|...+-.+++.+...--+|....+.|..++..++.- .+.+-..+.+++.++.+
T Consensus 154 ~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~ 233 (312)
T smart00787 154 EGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEE 233 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555544444443332 23334444444555555
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhcc
Q 024699 172 LVEARRAFEFEKKANEEQIEQKQAMENNL----ISMAREIEKLRAELLNTERRA 221 (264)
Q Consensus 172 lqr~Raa~EyEKk~~~e~~Eq~qaMEknl----ismarEvEKLRaElanae~ra 221 (264)
++...+.|+--++...+..++.+.-|+-+ .-=..||.+|++.+..-++..
T Consensus 234 l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l~ 287 (312)
T smart00787 234 LQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSLT 287 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence 55555555555555555555555544422 111344555555555555443
No 54
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=94.83 E-value=0.84 Score=43.36 Aligned_cols=96 Identities=20% Similarity=0.340 Sum_probs=52.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q 024699 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQK 193 (264)
Q Consensus 114 e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~ 193 (264)
.....+..++..|++.|.....+|..++..+.++-..+..++..+-.-..+++....++-+....+..+. .+..+..
T Consensus 39 ~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l---~~~~~e~ 115 (314)
T PF04111_consen 39 SDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLEL---IEFQEER 115 (314)
T ss_dssp ---HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 3444555666666666666666666666666666666655554444444455544455555555555443 3344455
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024699 194 QAMENNLISMAREIEKLRA 212 (264)
Q Consensus 194 qaMEknlismarEvEKLRa 212 (264)
+.++..+..+...+++|+.
T Consensus 116 ~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 116 DSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5556666666666666653
No 55
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.70 E-value=1.3 Score=42.34 Aligned_cols=95 Identities=21% Similarity=0.271 Sum_probs=42.6
Q ss_pred ccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 59 HAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELT 138 (264)
Q Consensus 59 RLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~ 138 (264)
.|...+..|+.|....-..+..+....+.++.-.+ .+..=+....+...++...+ ..||.+++.++..+...-....
T Consensus 148 ~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~-~L~~e~~~L~~~~~e~~~~d--~~eL~~lk~~l~~~~~ei~~~~ 224 (312)
T smart00787 148 GLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKD-ALEEELRQLKQLEDELEDCD--PTELDRAKEKLKKLLQEIMIKV 224 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666655555553222 11111122222223333322 1344445544444444444444
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 024699 139 TQIKGLTKDVNRLEAENK 156 (264)
Q Consensus 139 ~qvq~l~qeL~r~~ad~q 156 (264)
.++..+.++|..+.+++.
T Consensus 225 ~~l~e~~~~l~~l~~~I~ 242 (312)
T smart00787 225 KKLEELEEELQELESKIE 242 (312)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 56
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=94.67 E-value=4.4 Score=47.27 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHH
Q 024699 163 ADIDGIRSELVEARRAFEFEKKANEEQIEQKQAME 197 (264)
Q Consensus 163 aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaME 197 (264)
+.|..|.++|..-|++-.-.+|.+.++.+.+.+..
T Consensus 1104 ~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~ 1138 (1930)
T KOG0161|consen 1104 ARIKELEEELEAERASRAKAERQRRDLSEELEELK 1138 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444333
No 57
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=94.61 E-value=5.2 Score=42.81 Aligned_cols=177 Identities=16% Similarity=0.214 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHH----------HHHhhhhhHH
Q 024699 39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRE----------LFDRGLKLEV 108 (264)
Q Consensus 39 LEe~l~~Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~----------l~ek~~KmEA 108 (264)
++-.|.--..||..+-....-+...|..+|+.|.+.+.+|....+....+++|.|.=--. --..+.+++.
T Consensus 292 ~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qe 371 (775)
T PF10174_consen 292 LKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQE 371 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556688888888888888888889999988888888888888888887632222 2223333444
Q ss_pred hhhh----chhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH--HHhhhhhHHHHHHHHHHHHHHHHHhhh
Q 024699 109 ELRA----SEPVRAEVVQLRAEVQKLNSSRQELT----TQIKGLTKDVNRL--EAENKQLIAMRADIDGIRSELVEARRA 178 (264)
Q Consensus 109 elra----~e~lk~El~q~raE~q~L~~~RQeL~----~qvq~l~qeL~r~--~ad~qqipal~aEie~lrqElqr~Raa 178 (264)
|+-. ++-++..+.....+|..|..--..|. .+-..+.....|+ ++|....--+...||....|..+.+..
T Consensus 372 E~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~ 451 (775)
T PF10174_consen 372 EKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQER 451 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 4322 12233333333333333333321122 2222233333333 355555555666777777777777766
Q ss_pred hhhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024699 179 FEFEKKA-NEEQIEQKQAMENNLISMAREIEKLRAELL 215 (264)
Q Consensus 179 ~EyEKk~-~~e~~Eq~qaMEknlismarEvEKLRaEla 215 (264)
|+....- ..+..|+...+.+-+-..-.+|+.|..+|.
T Consensus 452 l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eLs 489 (775)
T PF10174_consen 452 LEEQRERAEKERQEELETYQKELKELKAKLESLQKELS 489 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 6544221 113344555555555555555555555544
No 58
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.59 E-value=5.6 Score=39.86 Aligned_cols=26 Identities=38% Similarity=0.404 Sum_probs=11.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHhh
Q 024699 152 EAENKQLIAMRADIDGIRSELVEARR 177 (264)
Q Consensus 152 ~ad~qqipal~aEie~lrqElqr~Ra 177 (264)
..+.++|.+++++|..=+.|+..+++
T Consensus 167 ~~~~~~l~~~~~~iaaeq~~l~~~~~ 192 (420)
T COG4942 167 KATLKQLAAVRAEIAAEQAELTTLLS 192 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555444444443333
No 59
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.53 E-value=5.1 Score=44.20 Aligned_cols=60 Identities=17% Similarity=0.170 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024699 159 IAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTE 218 (264)
Q Consensus 159 pal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElanae 218 (264)
.+-..+++.-.+|.+++-..+|..++....+-.|+..+++++-++..|+..|++.+.+++
T Consensus 804 e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~ 863 (1174)
T KOG0933|consen 804 EESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVE 863 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344566677777777777777888887777778888888888888888888888887764
No 60
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.53 E-value=3.9 Score=42.35 Aligned_cols=155 Identities=19% Similarity=0.279 Sum_probs=94.6
Q ss_pred hHHHHHHHHHHhhhhcccccccccch----------HHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHH
Q 024699 39 LEEEIEIQRREMHRIISENRHAIDDN----------THLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEV 108 (264)
Q Consensus 39 LEe~l~~Q~~EiqrLl~dNqRLaath----------vaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEA 108 (264)
|++-...+.-+|..|=..|+.|-... -.||...+..+.|++...+. +-.+-.+...|+.
T Consensus 226 l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y-----------~~~~~~k~~~~~~ 294 (581)
T KOG0995|consen 226 LEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAY-----------VSQMKSKKQHMEK 294 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHH-----------HHHHHhhhHHHHH
Confidence 34444455566777766666654332 34445555555555555444 4455578888887
Q ss_pred hhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 024699 109 ELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKG---LTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKA 185 (264)
Q Consensus 109 elra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~---l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~ 185 (264)
..+-|+.|+.....|+++|.....+|..+|.. -..|+.+...|..+ |..+|+.+.-|+.+.+.-+-..+-.
T Consensus 295 ---~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~---l~r~l~~i~~~~d~l~k~vw~~~l~ 368 (581)
T KOG0995|consen 295 ---KLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNK---LKRELNKIQSELDRLSKEVWELKLE 368 (581)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 77889999999999999999999999988865 34555555555533 3344444444444444444333332
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 186 NEEQIEQKQAMENNLISMAREIEKLRAE 213 (264)
Q Consensus 186 ~~e~~Eq~qaMEknlismarEvEKLRaE 213 (264)
. -.+-+..|+.++-.+.=+-+|---
T Consensus 369 ~---~~~f~~le~~~~~~~~l~~~i~l~ 393 (581)
T KOG0995|consen 369 I---EDFFKELEKKFIDLNSLIRRIKLG 393 (581)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 344555666666666666665554
No 61
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.25 E-value=4.1 Score=36.94 Aligned_cols=154 Identities=25% Similarity=0.385 Sum_probs=83.0
Q ss_pred hhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHH
Q 024699 51 HRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKL 130 (264)
Q Consensus 51 qrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L 130 (264)
..|=..|+||+.....|+..+..+.+.-.+|..-|.+++ .+++.+ .+.. .-..+|+.|+..++..+.+|
T Consensus 11 ~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~----~q~~s~-Qqal------~~aK~l~eEledLk~~~~~l 79 (193)
T PF14662_consen 11 EDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLR----KQLKSL-QQAL------QKAKALEEELEDLKTLAKSL 79 (193)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-HHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 345577999999999999999999999999999888887 445544 2221 12234555555555555555
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHhhhhhHHHHHHHHHHHHHHHHH-------hh-hhhhhhhh------hHHH
Q 024699 131 NSSRQELTTQIKGLTKD-------VNRLEAENKQLIAMRADIDGIRSELVEA-------RR-AFEFEKKA------NEEQ 189 (264)
Q Consensus 131 ~~~RQeL~~qvq~l~qe-------L~r~~ad~qqipal~aEie~lrqElqr~-------Ra-a~EyEKk~------~~e~ 189 (264)
.....-|.++...+.++ +..++-++.++ .+|+|++..-+.-+ .. -|+||.-. -.+.
T Consensus 80 EE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl---~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~ 156 (193)
T PF14662_consen 80 EEENRSLLAQARQLEKEQQSLVAEIETLQEENGKL---LAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSER 156 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444443333332 22222222221 12222222111111 11 12444322 2344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024699 190 IEQKQAMENNLISMAREIEKLRAELLNTE 218 (264)
Q Consensus 190 ~Eq~qaMEknlismarEvEKLRaElanae 218 (264)
.-|.....+-+.-...=++-||+|+...+
T Consensus 157 t~~i~eL~~~ieEy~~~teeLR~e~s~LE 185 (193)
T PF14662_consen 157 TQQIEELKKTIEEYRSITEELRLEKSRLE 185 (193)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666788888887654
No 62
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=94.25 E-value=1.5 Score=39.75 Aligned_cols=82 Identities=22% Similarity=0.327 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH----HHHHHHH-HhhhhhhhhhhhHHH
Q 024699 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDG----IRSELVE-ARRAFEFEKKANEEQ 189 (264)
Q Consensus 115 ~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~----lrqElqr-~Raa~EyEKk~~~e~ 189 (264)
.+.+|+.++..++..|....+.|...|....+++..++.++.++-..+.+|.. |-.+|.. +...+=|-...+.+.
T Consensus 53 ~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~~R 132 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLEERQER 132 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHH
Confidence 44466677777777777777888888888888888888888777777777744 4444444 333444444444445
Q ss_pred HHHHHHH
Q 024699 190 IEQKQAM 196 (264)
Q Consensus 190 ~Eq~qaM 196 (264)
++.++.|
T Consensus 133 l~~L~~~ 139 (251)
T PF11932_consen 133 LARLRAM 139 (251)
T ss_pred HHHHHHh
Confidence 5444443
No 63
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=94.10 E-value=6 Score=44.48 Aligned_cols=63 Identities=16% Similarity=0.109 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhhhhHHHHH-HHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 024699 145 TKDVNRLEAENKQLIAMRA-DIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREI 207 (264)
Q Consensus 145 ~qeL~r~~ad~qqipal~a-Eie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEv 207 (264)
.+++.++..++..++.... .++.+.++|+.+|..++-=.+...+......+.++-+.....++
T Consensus 902 ~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~ 965 (1353)
T TIGR02680 902 RAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKR 965 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444433 45555555555555444444333333333333333333333333
No 64
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=94.08 E-value=3.1 Score=37.67 Aligned_cols=95 Identities=21% Similarity=0.333 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHH
Q 024699 121 VQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNL 200 (264)
Q Consensus 121 ~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknl 200 (264)
.+.+..+.++...+++|..++..+.+++..++..++++- ..++..++|+..+-..++.-++...+..-.+..|-..|
T Consensus 38 ~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~---~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L 114 (251)
T PF11932_consen 38 QQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLE---RQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDEL 114 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888888888888888888888888766554 46677888888888888888899999999999999988
Q ss_pred HHHHHH------------HHHHHHHHhhhh
Q 024699 201 ISMARE------------IEKLRAELLNTE 218 (264)
Q Consensus 201 ismarE------------vEKLRaElanae 218 (264)
-..... |++|++.+.+++
T Consensus 115 ~~~v~~d~Pf~~~eR~~Rl~~L~~~l~~~d 144 (251)
T PF11932_consen 115 EQFVELDLPFLLEERQERLARLRAMLDDAD 144 (251)
T ss_pred HHHHhcCCCCChHHHHHHHHHHHHhhhccC
Confidence 885441 788888877764
No 65
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.00 E-value=6 Score=43.66 Aligned_cols=122 Identities=20% Similarity=0.306 Sum_probs=65.5
Q ss_pred cccccchHHHHHHHHhhHHHHH--------------HHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHH
Q 024699 58 RHAIDDNTHLQRELTASKDEIH--------------RLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQL 123 (264)
Q Consensus 58 qRLaathvaLrqeLaaaq~Elq--------------rl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~ 123 (264)
+++.++.-.++.++.-.+++|- .+-..+.+..+++|-.+-++...+-..... .+.-+.++...
T Consensus 737 ~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~---~e~~~~~~ek~ 813 (1174)
T KOG0933|consen 737 HKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQR---AEESSKELEKR 813 (1174)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 4566677777777776665553 344455566667776666666555444432 22233333333
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 024699 124 RAEVQKLNSS-------RQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKA 185 (264)
Q Consensus 124 raE~q~L~~~-------RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~ 185 (264)
.-|.+.|... .+.+-.+.+.+...+..+.+ +++.+++.|++...+...+-+.+..+|+.
T Consensus 814 ~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~---e~~~l~~kv~~~~~~~~~~~~el~~~k~k 879 (1174)
T KOG0933|consen 814 ENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKS---ELGNLEAKVDKVEKDVKKAQAELKDQKAK 879 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Confidence 3333333333 33333333333333333333 34666777777777777777777766664
No 66
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=93.95 E-value=2.9 Score=48.32 Aligned_cols=159 Identities=19% Similarity=0.242 Sum_probs=104.5
Q ss_pred hhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHH
Q 024699 50 MHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQK 129 (264)
Q Consensus 50 iqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~ 129 (264)
+.-+-.||.||-.+|..+.+.+..++..|-...+-- ..-+..+.+.-+++.++.-| -.|+.-=..+|.|...
T Consensus 1169 ~~~lk~e~~~L~qq~~~~~k~i~dL~~sL~~~r~~~-q~~a~s~~e~~~i~~~v~~v-------Nll~EsN~~LRee~~~ 1240 (1822)
T KOG4674|consen 1169 LDTLKRENARLKQQVASLNRTIDDLQRSLTAERASS-QKSAVSDDEHKEILEKVEEV-------NLLRESNKVLREENEA 1240 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccchhhhhhhhHHHHHHHHH-------HHHHHhHHHHHHHHHH
Confidence 333455555555555444444444443333222110 00122233333444333333 2344555567777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHH-HHHHHHHHH
Q 024699 130 LNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENN-LISMAREIE 208 (264)
Q Consensus 130 L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEkn-lismarEvE 208 (264)
+..-.|||..+|..+..++..++.++ ..++++|+....|+-.++.-.+-=|+-+.+++++-+--.+| +=....||.
T Consensus 1241 ~~~k~qEl~~~i~kl~~el~plq~~l---~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~ 1317 (1822)
T KOG4674|consen 1241 NLEKIQELRDKIEKLNFELAPLQNEL---KELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEIS 1317 (1822)
T ss_pred HHHHHHHHHHHHHHHHhhHhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 88888999999999999999999988 45678888888888888888888899999999995555444 456777999
Q ss_pred HHHHHHhhhhh
Q 024699 209 KLRAELLNTER 219 (264)
Q Consensus 209 KLRaElanae~ 219 (264)
+|..||.+.++
T Consensus 1318 ~Lk~el~~ke~ 1328 (1822)
T KOG4674|consen 1318 RLKEELEEKEN 1328 (1822)
T ss_pred HHHHHHHHHHH
Confidence 99999997765
No 67
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=93.94 E-value=1.1 Score=46.75 Aligned_cols=114 Identities=14% Similarity=0.249 Sum_probs=60.2
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhHhhhhh-----HHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 65 THLQRELTASKDEIHRLGQIIPKLRADK-----EAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTT 139 (264)
Q Consensus 65 vaLrqeLaaaq~Elqrl~~~~~~l~ae~-----e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~ 139 (264)
.=|.++|...+++|...-..+.+.+.+. +.+...+++++..+++++.......+++.+.-.+ =.-.=+.|..
T Consensus 270 ~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~---~hP~v~~l~~ 346 (726)
T PRK09841 270 EFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKK---DHPTYRALLE 346 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCchHHHHHH
Confidence 3355555555555555555555555544 2344555666655555443332222222211000 0001134444
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhh
Q 024699 140 QIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEF 181 (264)
Q Consensus 140 qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~Ey 181 (264)
+++.+.++++++++.++++|....|+..|..|..-.|.-|++
T Consensus 347 ~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~ 388 (726)
T PRK09841 347 KRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQ 388 (726)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777777778887777777777776666655544
No 68
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=93.80 E-value=8.1 Score=42.80 Aligned_cols=65 Identities=22% Similarity=0.344 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 024699 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLT-KDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (264)
Q Consensus 116 lk~El~q~raE~q~L~~~RQeL~~qvq~l~-qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~E 180 (264)
+..++..+.+++..+...-..+..+-...- +++..+..++.++|.++.+++.++.++.-+=+++.
T Consensus 311 ~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~ 376 (1201)
T PF12128_consen 311 LNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQ 376 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444432 25666666777777777777766666655544443
No 69
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=93.78 E-value=5.3 Score=38.49 Aligned_cols=157 Identities=18% Similarity=0.268 Sum_probs=80.3
Q ss_pred hhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhh-----------hH--H---------HHHHHHHhhhhhHH
Q 024699 51 HRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRAD-----------KE--A---------HTRELFDRGLKLEV 108 (264)
Q Consensus 51 qrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae-----------~e--~---------q~R~l~ek~~KmEA 108 (264)
|.|+..|+-|...--.|.++|.++...|..|.+-+.. +.| .+ . .......+...+|+
T Consensus 86 qsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~-kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~ 164 (306)
T PF04849_consen 86 QSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSM-KDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEA 164 (306)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHH
Confidence 8999999999988899999999999888888765431 111 00 0 00001112222333
Q ss_pred hhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHH
Q 024699 109 ELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEE 188 (264)
Q Consensus 109 elra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e 188 (264)
==+-.-.+..|-.++|.|+..|...--.+-.+-|.|..|.. +|+......|..|..||-+-.-.+..-..--..
T Consensus 165 Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv------~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~ 238 (306)
T PF04849_consen 165 LQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCV------KQLSEANQQIASLSEELARKTEENRRQQEEITS 238 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHH------HHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233344566777777777777666666666666555443 222222333333333333333322222222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 189 QIEQKQAMENNLISMAREIEKLRAEL 214 (264)
Q Consensus 189 ~~Eq~qaMEknlismarEvEKLRaEl 214 (264)
++.|+-.+++.+=..+.|-|+|..-|
T Consensus 239 LlsqivdlQ~r~k~~~~EnEeL~q~L 264 (306)
T PF04849_consen 239 LLSQIVDLQQRCKQLAAENEELQQHL 264 (306)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44444444444444444444444333
No 70
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.78 E-value=5.7 Score=44.40 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=27.3
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhhc
Q 024699 171 ELVEARRAFEFEKKANEEQIEQKQAMENNLISMARE-------IEKLRAELLNTERR 220 (264)
Q Consensus 171 Elqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarE-------vEKLRaElanae~r 220 (264)
|+..+=.++..=|+...+....+..++|++..+..+ ++..++++.-.+..
T Consensus 978 ~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId~~~K~e~~~~~l~e~~~~ 1034 (1293)
T KOG0996|consen 978 EYKEAEESLKEIKKELRDLKSELENIKKSENELKAERIDIENKLEAINGELNEIESK 1034 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhh
Confidence 333333444444555566666666666666666663 55555555544433
No 71
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=93.77 E-value=2.9 Score=40.08 Aligned_cols=104 Identities=19% Similarity=0.339 Sum_probs=73.1
Q ss_pred HHHHHhhhhhHHhhhhchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHH
Q 024699 97 RELFDRGLKLEVELRASEP---VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN----KQLIAMRADIDGIR 169 (264)
Q Consensus 97 R~l~ek~~KmEAelra~e~---lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~----qqipal~aEie~lr 169 (264)
+.|++++..|+.+|..... ...++.-+.+++..|...+.++..+|+.+.++.+..+-++ +.+..++.+.|.|+
T Consensus 134 ~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~h 213 (294)
T COG1340 134 RELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELH 213 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777766642 3344555556666766666666666666666665555443 45678899999999
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHHHHHH
Q 024699 170 SELVEARRAFEFEKKANEEQIEQKQAMENNL 200 (264)
Q Consensus 170 qElqr~Raa~EyEKk~~~e~~Eq~qaMEknl 200 (264)
.++...+..++.....+.....-....++-+
T Consensus 214 e~~ve~~~~~~e~~ee~~~~~~elre~~k~i 244 (294)
T COG1340 214 EEFVELSKKIDELHEEFRNLQNELRELEKKI 244 (294)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988888777776666655533
No 72
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=93.65 E-value=2 Score=34.11 Aligned_cols=69 Identities=23% Similarity=0.331 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 137 LTTQIKGLTKDVNRLEAEN----KQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEK 209 (264)
Q Consensus 137 L~~qvq~l~qeL~r~~ad~----qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEK 209 (264)
+..++..+.+.+.|+.++. |..-++..-.|+|..|+..++.-+. .+.+..++++-+|+++++-..+.||
T Consensus 22 k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~----Ks~~~i~~L~~~E~~~~~~l~~~Ek 94 (96)
T PF08647_consen 22 KVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLS----KSSELIEQLKETEKEFVRKLKNLEK 94 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3333333444444444332 2344555668999999998888764 5678888999999999999888875
No 73
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=93.61 E-value=12 Score=40.05 Aligned_cols=10 Identities=20% Similarity=0.195 Sum_probs=5.7
Q ss_pred CCCCCCCCCC
Q 024699 18 RDGPRPVLTR 27 (264)
Q Consensus 18 ~~~p~p~~~r 27 (264)
+.++-|.-|+
T Consensus 456 ~~~~CPvCg~ 465 (908)
T COG0419 456 AGEKCPVCGQ 465 (908)
T ss_pred CCCCCCCCCC
Confidence 3456666664
No 74
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=93.60 E-value=0.02 Score=59.21 Aligned_cols=160 Identities=21% Similarity=0.294 Sum_probs=0.0
Q ss_pred cccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhh---HHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHH-
Q 024699 58 RHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADK---EAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSS- 133 (264)
Q Consensus 58 qRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~---e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~- 133 (264)
+-++..+..|+..|...++|+.++.....+++.+- +.++.+|=.++.-+-++.+....||+|+.-+|..+.++...
T Consensus 235 ~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE 314 (713)
T PF05622_consen 235 QHLSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLE 314 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 44445556677777777777777766666555433 34566666666666677777777888877777765553321
Q ss_pred -------------------HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 024699 134 -------------------RQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQ 194 (264)
Q Consensus 134 -------------------RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~q 194 (264)
-++|..+...+.+....+..+++...+++..|+.+++++..+-+....+++-...+.....
T Consensus 315 ~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~ 394 (713)
T PF05622_consen 315 NEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENK 394 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222223333344445667777888888899999999988888888877777666666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 024699 195 AMENNLISMAREIEKLRAELLNT 217 (264)
Q Consensus 195 aMEknlismarEvEKLRaElana 217 (264)
.++..+.++.+|.+.|..|..+-
T Consensus 395 ~L~ek~~~l~~eke~l~~e~~~L 417 (713)
T PF05622_consen 395 QLEEKLEALEEEKERLQEERDSL 417 (713)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777766544
No 75
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=93.58 E-value=4.6 Score=36.17 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 024699 159 IAMRADIDGIRSELVEARRAFE 180 (264)
Q Consensus 159 pal~aEie~lrqElqr~Raa~E 180 (264)
-..+..|+.+++.+...|..+.
T Consensus 87 ~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 87 EQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666665555
No 76
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=93.58 E-value=9.6 Score=42.21 Aligned_cols=63 Identities=25% Similarity=0.372 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHhhhhhc
Q 024699 158 LIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQ---KQAM-ENNLISMAREIEKLRAELLNTERR 220 (264)
Q Consensus 158 ipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq---~qaM-EknlismarEvEKLRaElanae~r 220 (264)
...+...|+.+.+++...++.++-+++.....+.+ .+.. +.-+.....+|+.|..+|...+.+
T Consensus 727 ~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~ 793 (1201)
T PF12128_consen 727 EAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEER 793 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555566677777777777666666554333332 1111 224555666777777777776554
No 77
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.49 E-value=2.3 Score=45.79 Aligned_cols=84 Identities=23% Similarity=0.341 Sum_probs=45.9
Q ss_pred cccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 60 AIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTT 139 (264)
Q Consensus 60 LaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~ 139 (264)
|-+.-.-|.+||.+.+.-+|.|..-+.+++...--+--++-.-.-..|-.+-.++.+++.+.-...-+++|+-.+|+|-.
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~ 514 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNH 514 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 44445566688888888888888888887766554443333322233333333344444444444444444445555544
Q ss_pred HHHH
Q 024699 140 QIKG 143 (264)
Q Consensus 140 qvq~ 143 (264)
++..
T Consensus 515 qlkq 518 (1118)
T KOG1029|consen 515 QLKQ 518 (1118)
T ss_pred HHHH
Confidence 4433
No 78
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=93.36 E-value=2.6 Score=45.70 Aligned_cols=100 Identities=16% Similarity=0.226 Sum_probs=70.9
Q ss_pred HHHHHHHHhhhhcccccccccchHHHHHHHHhhHHH--------------HHHHhhhhhHhhhhhHHHHHHHHHhhhhhH
Q 024699 42 EIEIQRREMHRIISENRHAIDDNTHLQRELTASKDE--------------IHRLGQIIPKLRADKEAHTRELFDRGLKLE 107 (264)
Q Consensus 42 ~l~~Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~E--------------lqrl~~~~~~l~ae~e~q~R~l~ek~~KmE 107 (264)
++..|..+|+--|.+-+|=+...--+++||.--..+ +..+.+-+-.+++|.+.||-++--++..+|
T Consensus 327 kltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e 406 (1265)
T KOG0976|consen 327 KLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLE 406 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 456666777776777666666555555555432221 122233346788999999999999999999
Q ss_pred HhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 108 VELRASEPVRAEVVQLRAEVQKLNSSRQELTTQI 141 (264)
Q Consensus 108 Aelra~e~lk~El~q~raE~q~L~~~RQeL~~qv 141 (264)
.=-+.+|++|.||+.+.--+..|.+.+-++--|.
T Consensus 407 ~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~ 440 (1265)
T KOG0976|consen 407 QGKKDHEAAKNELQEALEKLDLMGTHLSMADYQL 440 (1265)
T ss_pred hccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9888999999999998887777777766655444
No 79
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=93.32 E-value=2.5 Score=38.52 Aligned_cols=127 Identities=31% Similarity=0.382 Sum_probs=66.3
Q ss_pred HHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Q 024699 77 EIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKG-------LTKDVN 149 (264)
Q Consensus 77 Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~-------l~qeL~ 149 (264)
||--|.+...+.++|--...- .+..||.-|.-+++.+......-++|...+.. ...+|+
T Consensus 11 EIsLLKqQLke~q~E~~~K~~--------------Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELq 76 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDS--------------EIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQ 76 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHh--------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHH
Confidence 556666666666655433332 23456666666666666666666666554444 455555
Q ss_pred HHHHhh----hhhHHHHHHHHHHHHHHHHHhhhhhhh-h-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024699 150 RLEAEN----KQLIAMRADIDGIRSELVEARRAFEFE-K-KANEEQIEQKQAMENNLISMAREIEKLRAELLNT 217 (264)
Q Consensus 150 r~~ad~----qqipal~aEie~lrqElqr~Raa~EyE-K-k~~~e~~Eq~qaMEknlismarEvEKLRaElana 217 (264)
+..++. .++..+.+||..|+.++..+.....-- . ...-+.-.+.+.=...+-++-++||.||+||..-
T Consensus 77 r~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~e 150 (202)
T PF06818_consen 77 RKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRE 150 (202)
T ss_pred HHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHH
Confidence 555544 334445555555555555441000000 0 0111111222222455778999999999999853
No 80
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=93.31 E-value=1.3 Score=33.73 Aligned_cols=54 Identities=20% Similarity=0.319 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Q 024699 114 EPVRAEVVQLRA-------EVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARR 177 (264)
Q Consensus 114 e~lk~El~q~ra-------E~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Ra 177 (264)
..|+..|.++.. +.+.|...|.....+++....+. ..|++|++.+++|+.+.|+
T Consensus 8 ~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~----------~~Lk~E~e~L~~el~~~r~ 68 (69)
T PF14197_consen 8 ATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEEN----------NKLKEENEALRKELEELRA 68 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhhc
Confidence 344444544444 44444455555555555444443 4567888999999888774
No 81
>PRK09039 hypothetical protein; Validated
Probab=93.30 E-value=8.1 Score=37.17 Aligned_cols=150 Identities=15% Similarity=0.134 Sum_probs=74.5
Q ss_pred cchHHHHHHHHhhHHHHHHHhh----------hhhHhhhhhHHHHHHHHHhhhhhHHhhhh----chhHHHHHHHHHHHH
Q 024699 62 DDNTHLQRELTASKDEIHRLGQ----------IIPKLRADKEAHTRELFDRGLKLEVELRA----SEPVRAEVVQLRAEV 127 (264)
Q Consensus 62 athvaLrqeLaaaq~Elqrl~~----------~~~~l~ae~e~q~R~l~ek~~KmEAelra----~e~lk~El~q~raE~ 127 (264)
.+-..+.++|...+.+|-.|.. .....=++-..+++.+-.....+|+-+.+ ..++..-+.++..++
T Consensus 46 ~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L 125 (343)
T PRK09039 46 REISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQEL 125 (343)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHH
Confidence 3455666777777777766652 22222222223333333444444442221 124444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 024699 128 QKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREI 207 (264)
Q Consensus 128 q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEv 207 (264)
..+.+.-.+...+|+.|+++++-++.- +..|.++|+...+...-.+..|+--+..=...+.+ --++|-.+..++
T Consensus 126 ~~~k~~~se~~~~V~~L~~qI~aLr~Q---la~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~---~~~~l~~~~~~~ 199 (343)
T PRK09039 126 DSEKQVSARALAQVELLNQQIAALRRQ---LAALEAALDASEKRDRESQAKIADLGRRLNVALAQ---RVQELNRYRSEF 199 (343)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHH
Confidence 555555555556666666666655543 45555555555555544444444332221111111 134666788885
Q ss_pred -HHHHHHHhhh
Q 024699 208 -EKLRAELLNT 217 (264)
Q Consensus 208 -EKLRaElana 217 (264)
-.||.-+.+.
T Consensus 200 ~~~l~~~~~~~ 210 (343)
T PRK09039 200 FGRLREILGDR 210 (343)
T ss_pred HHHHHHHhCCC
Confidence 5777555554
No 82
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=93.28 E-value=4.1 Score=36.80 Aligned_cols=97 Identities=16% Similarity=0.197 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhh----hHHHHHHH
Q 024699 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKA----NEEQIEQK 193 (264)
Q Consensus 118 ~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~----~~e~~Eq~ 193 (264)
.||.++-.++++|..--|+|....-.+..|+.-+.+-+ .+|.|..+|..|+.|.---|--++.-|.+ ..+-.+|.
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~L-t~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v 157 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSAL-TTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQV 157 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 68889999999988888888777777777777666655 68888999999999888877777777766 45677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 024699 194 QAMENNLISMAREIEKLRAELL 215 (264)
Q Consensus 194 qaMEknlismarEvEKLRaEla 215 (264)
.-|=...++|-|.....=-||-
T Consensus 158 ~~~y~~~~~~wrk~krmf~ei~ 179 (201)
T KOG4603|consen 158 YREYQKYCKEWRKRKRMFREII 179 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889998888776655543
No 83
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.22 E-value=1.8 Score=41.87 Aligned_cols=116 Identities=22% Similarity=0.303 Sum_probs=72.6
Q ss_pred cccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhH-HHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHH
Q 024699 54 ISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKE-AHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNS 132 (264)
Q Consensus 54 l~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e-~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~ 132 (264)
-..|..|..+-..|+|.|..++-|+.-|...+.+.+...+ ...+... ..=|.-|.-.|.++....|+..|++.+.-
T Consensus 78 re~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~---~ere~lV~qLEk~~~q~~qLe~d~qs~lD 154 (319)
T PF09789_consen 78 REQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFP---HEREDLVEQLEKLREQIEQLERDLQSLLD 154 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999998886654 1122111 11112222335666666777777776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHH----HHHHHHHHHHHH
Q 024699 133 SRQELTTQIKGLTKDVNRLEAENKQLIA----MRADIDGIRSEL 172 (264)
Q Consensus 133 ~RQeL~~qvq~l~qeL~r~~ad~qqipa----l~aEie~lrqEl 172 (264)
..+||..+-..+.....|+.-++..+-. =..+||+|--|-
T Consensus 155 EkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~EN 198 (319)
T PF09789_consen 155 EKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMEN 198 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Confidence 6666666666655555555444432200 012677776664
No 84
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.17 E-value=12 Score=42.10 Aligned_cols=163 Identities=16% Similarity=0.248 Sum_probs=86.8
Q ss_pred HhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhh----hchhHHHHHHHHH
Q 024699 49 EMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELR----ASEPVRAEVVQLR 124 (264)
Q Consensus 49 EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelr----a~e~lk~El~q~r 124 (264)
|+......+++....+ .-++...+..+....-.+.+++.+-+...-.+.+.+.++|.+|- ..--++.|++-++
T Consensus 430 e~e~~pe~~~~~i~~~---~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vae 506 (1293)
T KOG0996|consen 430 ELEKAPEKARIEIQKC---QTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARSELDVAE 506 (1293)
T ss_pred HHHhCchhhHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555544443 34455555555555555555555555555556666666666332 2223344444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHH
Q 024699 125 AEVQKLNSSRQELTTQIKGLTKDVNRLEAE----NKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNL 200 (264)
Q Consensus 125 aE~q~L~~~RQeL~~qvq~l~qeL~r~~ad----~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknl 200 (264)
+|+.=|...-..+..++..+...|..+..+ .--|..++.+|+.+.+|+..+...++--++ -.+.|-+++
T Consensus 507 sel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~-------e~~~~~~~~ 579 (1293)
T KOG0996|consen 507 SELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRK-------EERNLKSQL 579 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHH-------HHHHHHHHH
Confidence 555555555555555555566666553333 233556666666666666665554443332 234444555
Q ss_pred HHHHHHHHHHHHHHhhhhhcc
Q 024699 201 ISMAREIEKLRAELLNTERRA 221 (264)
Q Consensus 201 ismarEvEKLRaElanae~ra 221 (264)
-..-.+|+-++.-+.....|.
T Consensus 580 ~~~rqrveE~ks~~~~~~s~~ 600 (1293)
T KOG0996|consen 580 NKLRQRVEEAKSSLSSSRSRN 600 (1293)
T ss_pred HHHHHHHHHHHHHHHhhhhhh
Confidence 556666777777655555444
No 85
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=93.15 E-value=15 Score=40.68 Aligned_cols=31 Identities=26% Similarity=0.299 Sum_probs=12.5
Q ss_pred HHhhHHHHHHHhhhhhHhh---hhhHHHHHHHHH
Q 024699 71 LTASKDEIHRLGQIIPKLR---ADKEAHTRELFD 101 (264)
Q Consensus 71 Laaaq~Elqrl~~~~~~l~---ae~e~q~R~l~e 101 (264)
+.-.++.+......+..++ +|.|.++-++.+
T Consensus 297 ~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~ 330 (1074)
T KOG0250|consen 297 VDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKD 330 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3333444444444444444 444444444333
No 86
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=93.06 E-value=15 Score=39.48 Aligned_cols=84 Identities=20% Similarity=0.362 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHH------HHHHHHH
Q 024699 136 ELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLIS------MAREIEK 209 (264)
Q Consensus 136 eL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlis------marEvEK 209 (264)
++..+|+.|.+++.+--.++=..|.|+.=+|.|+-|+-.+=.+=+-|.|.+++-++| .+.+.|.. +----|.
T Consensus 646 ~~k~KIe~L~~eIkkkIe~av~ss~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~--qik~~~~~a~~~~~lkek~e~ 723 (762)
T PLN03229 646 NLQEKIESLNEEINKKIERVIRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQ--QIKQKIAEALNSSELKEKFEE 723 (762)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH--HHHHHHHHHhccHhHHHHHHH
Confidence 346678888888888888888888899999999999988877778888888888887 23333322 1222789
Q ss_pred HHHHHhhhhhcc
Q 024699 210 LRAELLNTERRA 221 (264)
Q Consensus 210 LRaElanae~ra 221 (264)
|++||+.+..-+
T Consensus 724 l~~e~~~~~~~~ 735 (762)
T PLN03229 724 LEAELAAARETA 735 (762)
T ss_pred HHHHHHHhhccc
Confidence 999998765433
No 87
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.04 E-value=5.3 Score=34.34 Aligned_cols=27 Identities=11% Similarity=0.311 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 024699 138 TTQIKGLTKDVNRLEAENKQLIAMRAD 164 (264)
Q Consensus 138 ~~qvq~l~qeL~r~~ad~qqipal~aE 164 (264)
+.+...|+++|++.+.-+..+-....+
T Consensus 79 ~sEk~~L~k~lq~~q~kv~eLE~~~~~ 105 (140)
T PF10473_consen 79 RSEKENLDKELQKKQEKVSELESLNSS 105 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 333333444444444444333333333
No 88
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.95 E-value=2.7 Score=36.87 Aligned_cols=44 Identities=16% Similarity=0.293 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 161 MRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKL 210 (264)
Q Consensus 161 l~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKL 210 (264)
|..|+.+|+=++-.+-..+.--++-|.++++.. |-.|++|+++|
T Consensus 149 l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw------m~~k~~eAe~m 192 (194)
T PF08614_consen 149 LQDELQALQLQLNMLEEKLRKLEEENRELVERW------MQRKAQEAERM 192 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHh
Confidence 334555555555555444444455555555542 33366666665
No 89
>PRK04863 mukB cell division protein MukB; Provisional
Probab=92.92 E-value=20 Score=41.21 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024699 190 IEQKQAMENNLISMAREIEKLRAELLNTE 218 (264)
Q Consensus 190 ~Eq~qaMEknlismarEvEKLRaElanae 218 (264)
-++++.++..+-.+-.++.++.+++...+
T Consensus 448 ~aklee~e~qL~elE~kL~~lea~leql~ 476 (1486)
T PRK04863 448 QAKEQEATEELLSLEQKLSVAQAAHSQFE 476 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554443
No 90
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=92.76 E-value=0.93 Score=48.08 Aligned_cols=57 Identities=21% Similarity=0.461 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 024699 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVE 174 (264)
Q Consensus 118 ~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr 174 (264)
-||-++..||-+|.+.|.-|..++-.||-++.+++...+.+|.|+++++.|+|=+--
T Consensus 866 GElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a 922 (961)
T KOG4673|consen 866 GELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAA 922 (961)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 388899999999999999999999999999999999999999999999999985543
No 91
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=92.76 E-value=10 Score=37.14 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=15.7
Q ss_pred cccccccchHHHHHHHHhhHHHHHHHhhhhh
Q 024699 56 ENRHAIDDNTHLQRELTASKDEIHRLGQIIP 86 (264)
Q Consensus 56 dNqRLaathvaLrqeLaaaq~Elqrl~~~~~ 86 (264)
|+..+-+....|+..+..++.++.+|.+-+.
T Consensus 91 d~~~~~~~~~~~~~~~~~~~~~~~rL~a~~~ 121 (457)
T TIGR01000 91 DNGNEENQKQLLEQQLDNLKDQKKSLDTLKQ 121 (457)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555544443
No 92
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=92.69 E-value=7.6 Score=35.25 Aligned_cols=108 Identities=21% Similarity=0.319 Sum_probs=62.5
Q ss_pred HHHHHHHHHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhh---hhHhh---hhhHHHHHHHHHhhhhhHHhhhhc-
Q 024699 41 EEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQI---IPKLR---ADKEAHTRELFDRGLKLEVELRAS- 113 (264)
Q Consensus 41 e~l~~Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~---~~~l~---ae~e~q~R~l~ek~~KmEAelra~- 113 (264)
+.-..-++.|..+--.|.+|+.....|+..+..+||=++.-.+. +.+++ ...|-+-+.|+..+..+|.|-...
T Consensus 22 ~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~ 101 (193)
T PF14662_consen 22 DENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLV 101 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455666666778888888888888887776555443221 11111 234466777777777777765543
Q ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 114 ---EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDV 148 (264)
Q Consensus 114 ---e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL 148 (264)
+.|-.|-.++-+|...|...-++|..+...|...|
T Consensus 102 ~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 102 AEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 34445555555555555555555544444444444
No 93
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=92.62 E-value=13 Score=37.58 Aligned_cols=96 Identities=21% Similarity=0.268 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH-------HHHHHHHHHhhhhhhhhhhhH
Q 024699 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADID-------GIRSELVEARRAFEFEKKANE 187 (264)
Q Consensus 115 ~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie-------~lrqElqr~Raa~EyEKk~~~ 187 (264)
..|+++..+..|+-++...-|.|...+..+..+-.++.+..|.+-+-..+|. .-..+|..-=+-||-|-+.-+
T Consensus 127 ~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la 206 (499)
T COG4372 127 AARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLA 206 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555444444444444444333333222 222222222222555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024699 188 EQIEQKQAMENNLISMAREIEKL 210 (264)
Q Consensus 188 e~~Eq~qaMEknlismarEvEKL 210 (264)
-.-++.|+-++-|.+-+.-...+
T Consensus 207 ~r~~a~q~r~~ela~r~aa~Qq~ 229 (499)
T COG4372 207 TRANAAQARTEELARRAAAAQQT 229 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566666655554443333
No 94
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=92.61 E-value=5.8 Score=33.72 Aligned_cols=127 Identities=23% Similarity=0.252 Sum_probs=83.8
Q ss_pred HHHHHHHhhHHHHHHHhhhhhHhh---hhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 66 HLQRELTASKDEIHRLGQIIPKLR---ADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIK 142 (264)
Q Consensus 66 aLrqeLaaaq~Elqrl~~~~~~l~---ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq 142 (264)
+||-|...+..-...+-+.+..+. ...|.+|.+|-.|+..+|.+|-..+.==.++...-.+..+..+.-.-|+-+|+
T Consensus 4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq 83 (143)
T PF12718_consen 4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQ 83 (143)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHH
Confidence 455555555555555554444443 34567888888888888887765543334444444444444444446888888
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 024699 143 GLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQ 192 (264)
Q Consensus 143 ~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq 192 (264)
.|-.+|.++...+.....--.+++.-=.++-|-..+++.+....-.-++.
T Consensus 84 ~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~ee 133 (143)
T PF12718_consen 84 LLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEE 133 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 89999988888888877777777777777777777777766655555544
No 95
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.56 E-value=2 Score=38.78 Aligned_cols=29 Identities=7% Similarity=0.241 Sum_probs=18.3
Q ss_pred chHHHHHHHHhhHHHHHHHhhhhhHhhhh
Q 024699 63 DNTHLQRELTASKDEIHRLGQIIPKLRAD 91 (264)
Q Consensus 63 thvaLrqeLaaaq~Elqrl~~~~~~l~ae 91 (264)
+...++..|...++||..+.+....+..+
T Consensus 87 ~~p~~~~rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 87 TTPSLRTRVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34456667777777777776666665544
No 96
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=92.56 E-value=11 Score=38.40 Aligned_cols=125 Identities=26% Similarity=0.313 Sum_probs=76.7
Q ss_pred hhhhHHHHHHHHHhhhhhHHhhhhchhHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhh-----------
Q 024699 89 RADKEAHTRELFDRGLKLEVELRASEPVRA-EVVQLRAEVQKL-NSSRQELTTQIKGLTKDVNRLEAEN----------- 155 (264)
Q Consensus 89 ~ae~e~q~R~l~ek~~KmEAelra~e~lk~-El~q~raE~q~L-~~~RQeL~~qvq~l~qeL~r~~ad~----------- 155 (264)
..|.|-++-.|+.|+.|+|++- -+|+ -|.|+|-|+=.| +..-||--+-|..|-+.+.++..|.
T Consensus 153 eqeqef~vnKlm~ki~Klen~t----~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpv 228 (552)
T KOG2129|consen 153 EQEQEFFVNKLMNKIRKLENKT----LLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPV 228 (552)
T ss_pred HHHHHHHHHHHHHHHHHhhhhh----HHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3566677888999999999742 2222 245555554333 3445555555555555555544432
Q ss_pred ---------hhh--------HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhh
Q 024699 156 ---------KQL--------IAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLIS-MAREIEKLRAELLNT 217 (264)
Q Consensus 156 ---------qqi--------pal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlis-marEvEKLRaElana 217 (264)
-.| .+++.=|+-|+.|+-|+|+.+--=.|-+.+.+-|..+=|+++-. -.++-+||.-|+...
T Consensus 229 s~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erR 308 (552)
T KOG2129|consen 229 STPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELERR 308 (552)
T ss_pred cCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 222 34667788999999999998887777777777777666665532 234455555555443
No 97
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=92.50 E-value=7.6 Score=34.76 Aligned_cols=141 Identities=10% Similarity=0.151 Sum_probs=78.8
Q ss_pred hhhhcccccccccchHHHHHHHH-hhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhh----hchhHHHHHHHHH
Q 024699 50 MHRIISENRHAIDDNTHLQRELT-ASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELR----ASEPVRAEVVQLR 124 (264)
Q Consensus 50 iqrLl~dNqRLaathvaLrqeLa-aaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelr----a~e~lk~El~q~r 124 (264)
+..++.....+|..|..|-+.|. ..-..|..+..... .....+.+.+.|+..+.. .++-.|..-.++-
T Consensus 62 ~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~-------~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c 134 (236)
T cd07651 62 LDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYT-------QKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEADC 134 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577778888888888887776 34455555433332 223333333333333221 2233333333333
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHH
Q 024699 125 AEVQKLNSSRQELT----TQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNL 200 (264)
Q Consensus 125 aE~q~L~~~RQeL~----~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknl 200 (264)
.++. ..+.... .+++.+...+.++..++ ...+.+....-+++...+.- |+.+- .+.+...|.||..=
T Consensus 135 ~~~e---~~~~~~~~~~~ke~eK~~~k~~k~~~~~---~~~~~~Y~~~v~~~~~~~~~--~~~~~-~~~~~~~Q~lEe~R 205 (236)
T cd07651 135 SKIN---SYTLQSQLTWGKELEKNNAKLNKAQSSI---NSSRRDYQNAVKALRELNEI--WNREW-KAALDDFQDLEEER 205 (236)
T ss_pred HhHH---HHHHHHcccCcchHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHHHH
Confidence 3322 2222211 23445555555555554 33567777788888888774 66655 68888899998887
Q ss_pred HHHHHH
Q 024699 201 ISMARE 206 (264)
Q Consensus 201 ismarE 206 (264)
|.+.++
T Consensus 206 i~~lk~ 211 (236)
T cd07651 206 IQFLKS 211 (236)
T ss_pred HHHHHH
Confidence 777776
No 98
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.32 E-value=8 Score=34.59 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 024699 195 AMENNLISMAREIEKLRAELLNTER 219 (264)
Q Consensus 195 aMEknlismarEvEKLRaElanae~ 219 (264)
.+|+.|..|...+|+--|+|...=.
T Consensus 147 lLEkKl~~l~~~lE~keaqL~evl~ 171 (201)
T PF13851_consen 147 LLEKKLQALSEQLEKKEAQLNEVLA 171 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888775543
No 99
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=92.25 E-value=21 Score=39.17 Aligned_cols=71 Identities=21% Similarity=0.309 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHH----HHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 024699 136 ELTTQIKGLTKDVN----RLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMARE 206 (264)
Q Consensus 136 eL~~qvq~l~qeL~----r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarE 206 (264)
+|..++..+..+.. +.++..+.+..+++|+..+.-|+..+--.++.---.++..+.|.-..+++=++.+.+
T Consensus 470 ~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~ 544 (980)
T KOG0980|consen 470 NLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAE 544 (980)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34444444444433 355667778889999999888888888887777777777888877777776666555
No 100
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=91.97 E-value=8.5 Score=34.17 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=34.2
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhh
Q 024699 167 GIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMA----REIEKLRAELLNTE 218 (264)
Q Consensus 167 ~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisma----rEvEKLRaElanae 218 (264)
..+.|-...-.-|.-|.+.-..+-.++.+.-.++.-|- +++.++|+|++.+-
T Consensus 124 ~~~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr~~TerdL~~~r~e~~r~~ 179 (182)
T PF15035_consen 124 EWREEEENFNQYLSSEHSRLLSLWREVVALRRQFAELRTATERDLSDMRAEFARTS 179 (182)
T ss_pred HHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44555555555555666666677777777777777664 34778888887653
No 101
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=91.93 E-value=9.6 Score=39.56 Aligned_cols=38 Identities=29% Similarity=0.474 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 024699 143 GLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (264)
Q Consensus 143 ~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~E 180 (264)
.+.+.+..+++.+.++|....|+..|..|..-.|..|+
T Consensus 356 ~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~ 393 (754)
T TIGR01005 356 QLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYE 393 (754)
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555444444443
No 102
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=91.90 E-value=1.3 Score=33.25 Aligned_cols=43 Identities=23% Similarity=0.409 Sum_probs=29.6
Q ss_pred hhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 105 KLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (264)
Q Consensus 105 KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qe 147 (264)
-||+||||-..+..||.++++....+..--|+--.+...|..+
T Consensus 5 aL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~e 47 (61)
T PF08826_consen 5 ALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQE 47 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999999887766555444444444333333
No 103
>PF13514 AAA_27: AAA domain
Probab=91.82 E-value=23 Score=38.83 Aligned_cols=82 Identities=20% Similarity=0.241 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 024699 139 TQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQA----MENNLISMAREIEKLRAEL 214 (264)
Q Consensus 139 ~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qa----MEknlismarEvEKLRaEl 214 (264)
.-+..+...|..++...+++-.+..+++.+++++..+...++.-.+...+++++..+ .=...+....+..+|+.++
T Consensus 784 ~~~~~L~~~l~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~L~~~a~~~~~e~l~~~~~~~~~~~~l~~~~ 863 (1111)
T PF13514_consen 784 EALEALRARLEEAREAQEERERLQEQLEELEEELEQAEEELEELEAELAELLEQAGVEDEEELREAEERAEERRELREEL 863 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345557777777777777777777777777777777766665554444443332211 0112333444555555555
Q ss_pred hhhhhc
Q 024699 215 LNTERR 220 (264)
Q Consensus 215 anae~r 220 (264)
...+..
T Consensus 864 ~~~~~~ 869 (1111)
T PF13514_consen 864 EDLERQ 869 (1111)
T ss_pred HHHHHH
Confidence 555443
No 104
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=91.78 E-value=4.9 Score=42.11 Aligned_cols=91 Identities=19% Similarity=0.336 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHH---HHHHH
Q 024699 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQ---IEQKQ 194 (264)
Q Consensus 118 ~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~---~Eq~q 194 (264)
-|+.+...++.++...=+.|..++..|..++. .++.||+.|+.++.++|.-++.+...+-+. -+-.-
T Consensus 415 ~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~e----------e~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~ 484 (652)
T COG2433 415 REITVYEKRIKKLEETVERLEEENSELKRELE----------ELKREIEKLESELERFRREVRDKVRKDREIRARDRRIE 484 (652)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34444444444444444444444444444333 233555555555555555555443332222 23344
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 024699 195 AMENNLISMAREIEKLRAELLNTE 218 (264)
Q Consensus 195 aMEknlismarEvEKLRaElanae 218 (264)
.++++|..=.++||.|..+|+...
T Consensus 485 ~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 485 RLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677666667777777666554
No 105
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=91.68 E-value=4.8 Score=41.77 Aligned_cols=98 Identities=26% Similarity=0.358 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH----HHHHHHHHHHHHHHHhhhhhhhhh--hhHHHH-HH
Q 024699 120 VVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIA----MRADIDGIRSELVEARRAFEFEKK--ANEEQI-EQ 192 (264)
Q Consensus 120 l~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipa----l~aEie~lrqElqr~Raa~EyEKk--~~~e~~-Eq 192 (264)
...-..|++.|...-++|..++..+..++....+.++++-. ...+...+.+++.--..+++..-. .|++.+ ..
T Consensus 323 ~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~ 402 (594)
T PF05667_consen 323 QEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQAL 402 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 33444555555555555666666666666655555544322 223333444444444444443222 233222 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 024699 193 KQAMENNLISMAREIEKLRAELLNT 217 (264)
Q Consensus 193 ~qaMEknlismarEvEKLRaElana 217 (264)
+++=+.||+.++.+-|+.|+.|..-
T Consensus 403 v~~s~~rl~~L~~qWe~~R~pL~~e 427 (594)
T PF05667_consen 403 VEASEQRLVELAQQWEKHRAPLIEE 427 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4556899999999999999887543
No 106
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=91.64 E-value=7.8 Score=34.68 Aligned_cols=18 Identities=22% Similarity=0.444 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024699 134 RQELTTQIKGLTKDVNRL 151 (264)
Q Consensus 134 RQeL~~qvq~l~qeL~r~ 151 (264)
|.+|+.++..++..+...
T Consensus 120 ReeL~~kL~~~~~~l~~~ 137 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEK 137 (194)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555444433
No 107
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=91.60 E-value=7 Score=40.21 Aligned_cols=151 Identities=15% Similarity=0.258 Sum_probs=87.5
Q ss_pred cccchHHHHHHHHhhH-HHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhc----hhHHHHHHHHHHHHHHHHHHH
Q 024699 60 AIDDNTHLQRELTASK-DEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRAS----EPVRAEVVQLRAEVQKLNSSR 134 (264)
Q Consensus 60 LaathvaLrqeLaaaq-~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~----e~lk~El~q~raE~q~L~~~R 134 (264)
+-+.-.++.|||.+.= +=+|.+...|.+++++.|- +-+.+.-++||..-+... -+|+.++....+=+..|..-.
T Consensus 247 ~~~~~~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~-l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~ 325 (622)
T COG5185 247 LEDNYEPSEQELKLGFEKFVHIINTDIANLKTQNDN-LYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKS 325 (622)
T ss_pred CCCccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3455566778887654 4467788889998877652 222233334444422222 233344444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 135 QELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAEL 214 (264)
Q Consensus 135 QeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaEl 214 (264)
|+-.+.+..|..+...... +|-+|++-+|+|+.-+..-+-.+|.-++-|+|- -.+.+||-.|.-++++|+.++
T Consensus 326 ~~~~g~l~kl~~eie~kEe---ei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Er----e~L~reL~~i~~~~~~L~k~V 398 (622)
T COG5185 326 QEWPGKLEKLKSEIELKEE---EIKALQSNIDELHKQLRKQGISTEQFELMNQER----EKLTRELDKINIQSDKLTKSV 398 (622)
T ss_pred HhcchHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHH----HHHHHHHHHhcchHHHHHHHH
Confidence 4444444444444444333 355677777777777777766666655555543 346788888888899998886
Q ss_pred hhhh
Q 024699 215 LNTE 218 (264)
Q Consensus 215 anae 218 (264)
-..+
T Consensus 399 ~~~~ 402 (622)
T COG5185 399 KSRK 402 (622)
T ss_pred HhHH
Confidence 6543
No 108
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.58 E-value=5.9 Score=41.20 Aligned_cols=119 Identities=17% Similarity=0.300 Sum_probs=69.0
Q ss_pred HHHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHh-----hhhhHHHHHHHH-----HhhhhhHHhhhhchhH
Q 024699 47 RREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKL-----RADKEAHTRELF-----DRGLKLEVELRASEPV 116 (264)
Q Consensus 47 ~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l-----~ae~e~q~R~l~-----ek~~KmEAelra~e~l 116 (264)
..||..+--||++|+..--+|+.+|..+..-+--+..+...+ +-++++..+++. +++.|||++|.-....
T Consensus 330 ~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~ 409 (654)
T KOG4809|consen 330 LEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNI 409 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367999999999999988889888876654444444443333 334555556554 7889999887543222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 024699 117 RAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIR 169 (264)
Q Consensus 117 k~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lr 169 (264)
-.| ++++ ..+...++.|-...--..+++.++++++..+=.+-+|+++++
T Consensus 410 ~dd---ar~~-pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkeveneK 458 (654)
T KOG4809|consen 410 EDD---ARMN-PEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEVENEK 458 (654)
T ss_pred hHh---hhcC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 111 1111 123334444444444455555555555555555555554443
No 109
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.56 E-value=20 Score=39.81 Aligned_cols=107 Identities=20% Similarity=0.274 Sum_probs=65.6
Q ss_pred HHHHHHHHHhhhhcccccc-------cccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhH---HHHHHHHHhhhhhHHhh
Q 024699 41 EEIEIQRREMHRIISENRH-------AIDDNTHLQRELTASKDEIHRLGQIIPKLRADKE---AHTRELFDRGLKLEVEL 110 (264)
Q Consensus 41 e~l~~Q~~EiqrLl~dNqR-------LaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e---~q~R~l~ek~~KmEAel 110 (264)
..|..+..+|..|..+=|+ +-..|-.|++++...+.|.+++...+....-+-+ ..+..+-+..--+|+||
T Consensus 692 ~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~el 771 (1200)
T KOG0964|consen 692 NEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESEL 771 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3444555555555544333 5577888999999998888888766554443332 45555556665666655
Q ss_pred h-------------hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 111 R-------------ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (264)
Q Consensus 111 r-------------a~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qe 147 (264)
- ....+..|+.+++.+...|...|-++.+....++-.
T Consensus 772 ~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~~rk~~le~~ 821 (1200)
T KOG0964|consen 772 GSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIETRKTALEAN 821 (1200)
T ss_pred hHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 335566677777777776777777766555554333
No 110
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=91.55 E-value=20 Score=39.79 Aligned_cols=55 Identities=20% Similarity=0.483 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 024699 114 EPVRAEVVQLRAEV-QKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSE 171 (264)
Q Consensus 114 e~lk~El~q~raE~-q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqE 171 (264)
+.++..+..++.+. +.|...+-+...++..|.+++.+++. ++..|+.|++.++.+
T Consensus 375 d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~---~~~~L~~e~~~~~~~ 430 (1074)
T KOG0250|consen 375 DRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEE---QINSLREELNEVKEK 430 (1074)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 34444444444444 55555555555555556665555554 444444444444433
No 111
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=91.51 E-value=13 Score=38.63 Aligned_cols=13 Identities=23% Similarity=0.261 Sum_probs=6.6
Q ss_pred HHHHHHHHhhhhh
Q 024699 207 IEKLRAELLNTER 219 (264)
Q Consensus 207 vEKLRaElanae~ 219 (264)
..+|..|+++..+
T Consensus 470 ~~qL~~e~e~~~k 482 (594)
T PF05667_consen 470 YKQLVKELEKLPK 482 (594)
T ss_pred HHHHHHHHHhCCC
Confidence 4455555555544
No 112
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=91.46 E-value=14 Score=41.68 Aligned_cols=106 Identities=17% Similarity=0.208 Sum_probs=49.2
Q ss_pred hhhHHHHHHHHHHhhhhcccccccc---cchHHHHHHHHhh---HHHHHH-HhhhhhHhhhhhHHHHHHHHHhhhhhHHh
Q 024699 37 MTLEEEIEIQRREMHRIISENRHAI---DDNTHLQRELTAS---KDEIHR-LGQIIPKLRADKEAHTRELFDRGLKLEVE 109 (264)
Q Consensus 37 ~~LEe~l~~Q~~EiqrLl~dNqRLa---athvaLrqeLaaa---q~Elqr-l~~~~~~l~ae~e~q~R~l~ek~~KmEAe 109 (264)
.+||+-+.--..++..|...++.++ ..+--|.+.+.-. ..|+++ -.+....=..|.+.++.+.-++..+++++
T Consensus 437 ~~le~~l~~~~~~~~~~~~~~~~~~~~~~~~keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~ 516 (1317)
T KOG0612|consen 437 QILEQSLVNEMQEKEKLDEKCQAVAELEEMDKELEETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEAL 516 (1317)
T ss_pred hhcccchhhHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4556555555556666666666666 3444444333222 233332 11112222233444555555555555555
Q ss_pred hhhc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 110 LRAS----EPVRAEVVQLRAEVQKLNSSRQELTTQIK 142 (264)
Q Consensus 110 lra~----e~lk~El~q~raE~q~L~~~RQeL~~qvq 142 (264)
++.. +.+++...+++-..+++.+.|++|-....
T Consensus 517 ~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~~ 553 (1317)
T KOG0612|consen 517 VRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAEL 553 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Confidence 5543 23344444444455555555555554333
No 113
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=91.34 E-value=12 Score=37.98 Aligned_cols=177 Identities=18% Similarity=0.305 Sum_probs=103.4
Q ss_pred CCchhhHHHHHHHHHHhhhhcccccccc-----cchHHHHHHHHhhHHHHHH--------------Hh----hhhhHhhh
Q 024699 34 FHPMTLEEEIEIQRREMHRIISENRHAI-----DDNTHLQRELTASKDEIHR--------------LG----QIIPKLRA 90 (264)
Q Consensus 34 p~P~~LEe~l~~Q~~EiqrLl~dNqRLa-----athvaLrqeLaaaq~Elqr--------------l~----~~~~~l~a 90 (264)
.|-..+||-----.+|+++|--+-.||- +|..|+.-=-.+-+.|+.| |. ....+++-
T Consensus 349 tHQkkiEdLQRqHqRELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqR 428 (593)
T KOG4807|consen 349 THQKKIEDLQRQHQRELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQR 428 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHH
Confidence 4667777744444467888877776653 4444332222222222222 11 11222333
Q ss_pred hhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Q 024699 91 DKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEA----------------- 153 (264)
Q Consensus 91 e~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~a----------------- 153 (264)
|-+.-.--.-+|.+..-+=+++.|+-+.-|.|-+-|-|.|++.-|||...+.. |+.+++.
T Consensus 429 ELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaa---EItrLRtlltgdGgGtGsplaqgk 505 (593)
T KOG4807|consen 429 ELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAA---EITRLRTLLTGDGGGTGSPLAQGK 505 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHH---HHHHHHHHhccCCCCCCCccccCc
Confidence 33322222334555555556677888888999999999999999999876543 3333221
Q ss_pred -----------hhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024699 154 -----------ENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLN 216 (264)
Q Consensus 154 -----------d~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElan 216 (264)
.-..|--|+.||..|+-|||-+-.+-.|-...|.+.+-.+-...- .--.+|+.|...|--
T Consensus 506 dayELEVLLRVKEsEiQYLKqEissLkDELQtalrDKkyaSdKYkDiYtELSiaKa---kadcdIsrLKEqLka 576 (593)
T KOG4807|consen 506 DAYELEVLLRVKESEIQYLKQEISSLKDELQTALRDKKYASDKYKDIYTELSIAKA---KADCDISRLKEQLKA 576 (593)
T ss_pred chhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhccccchhHHHHHHHHHHH---hhhccHHHHHHHHHH
Confidence 112356688899999999998888888887777777654321111 122457777766643
No 114
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=91.14 E-value=16 Score=38.18 Aligned_cols=124 Identities=17% Similarity=0.316 Sum_probs=62.5
Q ss_pred hhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---
Q 024699 82 GQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL--- 158 (264)
Q Consensus 82 ~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqi--- 158 (264)
...+..|++|+|...--|-.-++. +++...++..+|..|...+...+.+|+.|-..|.+++...+..
T Consensus 3 ~e~l~qlq~Erd~ya~~lk~e~a~----------~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~ 72 (617)
T PF15070_consen 3 MESLKQLQAERDQYAQQLKEESAQ----------WQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPP 72 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 345667777877654444333322 4455556666666666666666666666666666665544321
Q ss_pred --H--------HHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024699 159 --I--------AMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELL 215 (264)
Q Consensus 159 --p--------al~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaEla 215 (264)
| .|.+|++.|+.|+..+-.-+..--+-|..+..-.+..|.-|..+=+.++.+..+..
T Consensus 73 ~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~ 139 (617)
T PF15070_consen 73 EPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQE 139 (617)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 34555555555555555444332221211111113334444444444555554443
No 115
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=91.06 E-value=9.2 Score=32.79 Aligned_cols=13 Identities=31% Similarity=0.514 Sum_probs=5.1
Q ss_pred HHHHHhhhhhHhh
Q 024699 77 EIHRLGQIIPKLR 89 (264)
Q Consensus 77 Elqrl~~~~~~l~ 89 (264)
|+.-....+..+.
T Consensus 82 e~~~~~~~l~~l~ 94 (191)
T PF04156_consen 82 ELSELQQQLQQLQ 94 (191)
T ss_pred hHHhHHHHHHHHH
Confidence 4444433333333
No 116
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.95 E-value=20 Score=39.12 Aligned_cols=84 Identities=21% Similarity=0.269 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q 024699 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE----NKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQ 189 (264)
Q Consensus 114 e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad----~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~ 189 (264)
.-+++-..|++-|+..|+---|+|+++++...-++...+.+ .+|..-+++||+-|+++|+..-...-+----.+++
T Consensus 433 v~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l 512 (1118)
T KOG1029|consen 433 VYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQEL 512 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 34667778888888899988999999888866666555544 45667777888888888877666555444444444
Q ss_pred HHHHHHHH
Q 024699 190 IEQKQAME 197 (264)
Q Consensus 190 ~Eq~qaME 197 (264)
-+|++.|.
T Consensus 513 ~~qlkq~q 520 (1118)
T KOG1029|consen 513 NHQLKQKQ 520 (1118)
T ss_pred HHHHHHhh
Confidence 44444443
No 117
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=90.90 E-value=2.1 Score=32.08 Aligned_cols=50 Identities=30% Similarity=0.411 Sum_probs=25.4
Q ss_pred HHHHHH---HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024699 160 AMRADI---DGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLN 216 (264)
Q Consensus 160 al~aEi---e~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElan 216 (264)
+|.+|| +.+..||.+++++ |...-.++|..|+..-.+..||+.|+-++..
T Consensus 5 aL~~EirakQ~~~eEL~kvk~~-------n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 5 ALEAEIRAKQAIQEELTKVKSA-------NLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666 5566666666643 2233334444444444555555555554443
No 118
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=90.89 E-value=0.068 Score=55.30 Aligned_cols=101 Identities=23% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH---HHHhhhhhhhhhhh
Q 024699 116 VRAEVVQLRAEVQKLNSSRQEL------TTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSEL---VEARRAFEFEKKAN 186 (264)
Q Consensus 116 lk~El~q~raE~q~L~~~RQeL------~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqEl---qr~Raa~EyEKk~~ 186 (264)
|+.+...+.+++....+.|.|| +.++..+..++.+.+--++-+..++..++.|+... ..-...+|.+-+..
T Consensus 279 L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~ 358 (713)
T PF05622_consen 279 LRQENEELQAEAREARALRDELDELREKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKA 358 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444443 22344455556666666666666666665555422 22233333333332
Q ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024699 187 EEQ-------IEQKQAMENNLISMAREIEKLRAELLN 216 (264)
Q Consensus 187 ~e~-------~Eq~qaMEknlismarEvEKLRaElan 216 (264)
... -.|...++..+..+.+++++|..|+..
T Consensus 359 ~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~ 395 (713)
T PF05622_consen 359 RALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQ 395 (713)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 134455555666666666655555443
No 119
>PRK11519 tyrosine kinase; Provisional
Probab=90.74 E-value=5.6 Score=41.49 Aligned_cols=108 Identities=14% Similarity=0.280 Sum_probs=50.9
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhHhhhhh-----HHHHHHHHHhhhhhHHhhhhchhHHHHHHHH----HHHHHHHHHHHH
Q 024699 65 THLQRELTASKDEIHRLGQIIPKLRADK-----EAHTRELFDRGLKLEVELRASEPVRAEVVQL----RAEVQKLNSSRQ 135 (264)
Q Consensus 65 vaLrqeLaaaq~Elqrl~~~~~~l~ae~-----e~q~R~l~ek~~KmEAelra~e~lk~El~q~----raE~q~L~~~RQ 135 (264)
.=|.++|..++++|...-..+.+.+.+. +.+.+.+++.+..+++++...+...+++.+. |-.+ +
T Consensus 270 ~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP~v-------~ 342 (719)
T PRK11519 270 AFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHPAY-------R 342 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHH-------H
Confidence 3455555555555555555555555433 2334445555544444333222211111110 0011 2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 024699 136 ELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (264)
Q Consensus 136 eL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 179 (264)
.|..+.+.+.+++..+++....+|....|+..|..|..-.+.-|
T Consensus 343 ~l~~~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~lY 386 (719)
T PRK11519 343 TLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVY 386 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666666666666666655555554444433
No 120
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=90.72 E-value=21 Score=36.36 Aligned_cols=105 Identities=15% Similarity=0.216 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH--------------------HHHHHHHHHH
Q 024699 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRA--------------------DIDGIRSELV 173 (264)
Q Consensus 114 e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~a--------------------Eie~lrqElq 173 (264)
..++.++..+...+..+.....++...++.+.++-..++..++.+-.... -+..+..++.
T Consensus 379 sel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~ 458 (569)
T PRK04778 379 SELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIE 458 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666665555444433222222 2256678888
Q ss_pred HHhhhhhhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024699 174 EARRAFEFEKKANEEQIE-QKQAMENNLISMAREIEKLRAELLNTER 219 (264)
Q Consensus 174 r~Raa~EyEKk~~~e~~E-q~qaMEknlismarEvEKLRaElanae~ 219 (264)
++...++. ...|.+-++ +....+..+-.+..+.+-|......++.
T Consensus 459 ~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~ 504 (569)
T PRK04778 459 ALAEELEE-KPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQ 504 (569)
T ss_pred HHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888 888888888 7777777777777776666666555553
No 121
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=90.70 E-value=0.073 Score=55.11 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=0.0
Q ss_pred hHHHHHHHhhhhhHhhhhhHHHHHHH
Q 024699 74 SKDEIHRLGQIIPKLRADKEAHTREL 99 (264)
Q Consensus 74 aq~Elqrl~~~~~~l~ae~e~q~R~l 99 (264)
++.++.........++..-|...+.|
T Consensus 126 le~el~~~~e~~~~~k~~le~~~~~L 151 (722)
T PF05557_consen 126 LEEELEEAEEELEQLKRKLEEEKRRL 151 (722)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444
No 122
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=90.57 E-value=7.9 Score=37.18 Aligned_cols=43 Identities=19% Similarity=0.252 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Q 024699 136 ELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRA 178 (264)
Q Consensus 136 eL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa 178 (264)
.+..++..+.+.+...+.+...+|....++..|..|+.-.+..
T Consensus 315 ~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~~~~~~ 357 (444)
T TIGR03017 315 ILKQREAELREALENQKAKVLELNRQRDEMSVLQRDVENAQRA 357 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666666666666655555443
No 123
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=90.54 E-value=24 Score=41.28 Aligned_cols=150 Identities=17% Similarity=0.218 Sum_probs=81.3
Q ss_pred cccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 024699 58 RHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQEL 137 (264)
Q Consensus 58 qRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL 137 (264)
+++-....-|..+|+.++.+++-....+..+.-+.+.++....-.+.-+.. -...+..+|.-++.++.+|...-.+|
T Consensus 801 ~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~---~~~~~~~~l~~~~~~~~~le~k~~eL 877 (1822)
T KOG4674|consen 801 DKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELES---ELKSLLTSLDSVSTNIAKLEIKLSEL 877 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566677777777777777777777777777777666555444443 44566677777777777777666666
Q ss_pred HHHHHHHHHHHHHHHH------hhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 138 TTQIKGLTKDVNRLEA------ENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLR 211 (264)
Q Consensus 138 ~~qvq~l~qeL~r~~a------d~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLR 211 (264)
..+|+.+.....-..+ ....++.|+.+.+.. -..+--+.+...---+.-+....||+-|.+|..+.++.|
T Consensus 878 ~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~----~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~ 953 (1822)
T KOG4674|consen 878 EKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEI----TDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETR 953 (1822)
T ss_pred HHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666654443332222 112222333332222 111222222222223334455566666666666655555
Q ss_pred HHH
Q 024699 212 AEL 214 (264)
Q Consensus 212 aEl 214 (264)
-++
T Consensus 954 ~~~ 956 (1822)
T KOG4674|consen 954 LEL 956 (1822)
T ss_pred Hhh
Confidence 443
No 124
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=90.49 E-value=28 Score=37.35 Aligned_cols=163 Identities=20% Similarity=0.250 Sum_probs=85.9
Q ss_pred cccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 024699 58 RHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQEL 137 (264)
Q Consensus 58 qRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL 137 (264)
..+...+..+...+...+..+++|......+..+...... .......++..+.....+...+....-++..|...-.+|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l 348 (908)
T COG0419 270 KIREEELRELERLLEELEEKIERLEELEREIEELEEELEG-LRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEEL 348 (908)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777778888888888887777776655554443 333333333333333333333333333333333333333
Q ss_pred HHHHHHHHHHHHHHHHhhhhh-HHHHHHH-------HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 138 TTQIKGLTKDVNRLEAENKQL-IAMRADI-------DGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEK 209 (264)
Q Consensus 138 ~~qvq~l~qeL~r~~ad~qqi-pal~aEi-------e~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEK 209 (264)
..........+......++.. -.+..++ ..+..+++...+....-.....+..++....++++....+++++
T Consensus 349 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~ 428 (908)
T COG0419 349 AEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEE 428 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222222222111 2222222 33445555555666666666777777777788888888888888
Q ss_pred HHHHHhhhhhcc
Q 024699 210 LRAELLNTERRA 221 (264)
Q Consensus 210 LRaElanae~ra 221 (264)
++.++.+.+..-
T Consensus 429 ~~~~~~~~~~~~ 440 (908)
T COG0419 429 LEEEIKKLEEQI 440 (908)
T ss_pred HHHHHHHHHHHH
Confidence 777776665443
No 125
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=90.48 E-value=21 Score=40.33 Aligned_cols=9 Identities=11% Similarity=0.434 Sum_probs=4.0
Q ss_pred HHHHHHHhh
Q 024699 43 IEIQRREMH 51 (264)
Q Consensus 43 l~~Q~~Eiq 51 (264)
+..+..|.+
T Consensus 477 lk~~~~el~ 485 (1317)
T KOG0612|consen 477 LKSEESELQ 485 (1317)
T ss_pred HHHHHHHHH
Confidence 334444444
No 126
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=90.45 E-value=19 Score=37.40 Aligned_cols=19 Identities=5% Similarity=0.433 Sum_probs=10.8
Q ss_pred hhhhhHHHHHHHHHHHHHH
Q 024699 154 ENKQLIAMRADIDGIRSEL 172 (264)
Q Consensus 154 d~qqipal~aEie~lrqEl 172 (264)
+..++-.++++|+.+++.+
T Consensus 314 ~hP~v~~l~~qi~~l~~~i 332 (754)
T TIGR01005 314 NHPRVVAAKSSLADLDAQI 332 (754)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 3345566666776665543
No 127
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=90.40 E-value=12 Score=36.60 Aligned_cols=32 Identities=0% Similarity=0.167 Sum_probs=19.6
Q ss_pred ccchHHHHHHHHhhHHHHHHHhhhhhHhhhhh
Q 024699 61 IDDNTHLQRELTASKDEIHRLGQIIPKLRADK 92 (264)
Q Consensus 61 aathvaLrqeLaaaq~Elqrl~~~~~~l~ae~ 92 (264)
..+-.-|.+++..++++|......+.+.+.+.
T Consensus 160 ~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~ 191 (498)
T TIGR03007 160 DSAQRFIDEQIKTYEKKLEAAENRLKAFKQEN 191 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34555566677777777666666666665443
No 128
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=90.35 E-value=18 Score=34.85 Aligned_cols=31 Identities=10% Similarity=0.280 Sum_probs=18.5
Q ss_pred cchHHHHHHHHhhHHHHHHHhhhhhHhhhhh
Q 024699 62 DDNTHLQRELTASKDEIHRLGQIIPKLRADK 92 (264)
Q Consensus 62 athvaLrqeLaaaq~Elqrl~~~~~~l~ae~ 92 (264)
.+-.-|.++|..++++|......+.+.+.+.
T Consensus 171 ~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 201 (444)
T TIGR03017 171 KAALWFVQQIAALREDLARAQSKLSAYQQEK 201 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3445566666666666666666666665544
No 129
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=90.27 E-value=4.6 Score=38.30 Aligned_cols=93 Identities=23% Similarity=0.294 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 024699 91 DKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRS 170 (264)
Q Consensus 91 e~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrq 170 (264)
.+--++|..+.-+...|. ++.+.|+--..+..+|++|..- +--+.++..|.+||.++.+++. ..-++|.++..
T Consensus 121 ~~~d~yR~~LK~IR~~E~---sl~p~R~~r~~l~d~I~kLk~k-~P~s~kl~~LeqELvraEae~l---vaEAqL~n~kR 193 (271)
T PF13805_consen 121 DRLDQYRIHLKSIRNREE---SLQPSRDRRRKLQDEIAKLKYK-DPQSPKLVVLEQELVRAEAENL---VAEAQLSNIKR 193 (271)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH--TTTTTHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHhHHHHHhHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHhh---HHHHHHHHhhH
Confidence 344678888888888888 5556777777778888887653 3346678888888888877773 22245777766
Q ss_pred HHHHHhhhhhhhhhhhHHHHHH
Q 024699 171 ELVEARRAFEFEKKANEEQIEQ 192 (264)
Q Consensus 171 Elqr~Raa~EyEKk~~~e~~Eq 192 (264)
+ .++.+|.+.=++-.|.-|.
T Consensus 194 ~--~lKEa~~~~f~Al~E~aEK 213 (271)
T PF13805_consen 194 Q--KLKEAYSLKFDALIERAEK 213 (271)
T ss_dssp H--HHHHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHHHHH
Confidence 5 5677777777776666554
No 130
>PRK11546 zraP zinc resistance protein; Provisional
Probab=90.03 E-value=0.85 Score=39.40 Aligned_cols=50 Identities=16% Similarity=0.240 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Q 024699 129 KLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRA 178 (264)
Q Consensus 129 ~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa 178 (264)
+....|++|.++-..|...++....|-+.|-+|..||..|++.|.-.|..
T Consensus 62 ~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~ 111 (143)
T PRK11546 62 QTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVK 111 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666666677788889989999999999999888766653
No 131
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=89.98 E-value=8.1 Score=36.52 Aligned_cols=67 Identities=18% Similarity=0.277 Sum_probs=58.1
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHHHHHhhh
Q 024699 112 ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL----IAMRADIDGIRSELVEARRA 178 (264)
Q Consensus 112 a~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqi----pal~aEie~lrqElqr~Raa 178 (264)
++..+..++.+.+..+..|.+.-..|.++++.-+.||.|.+.-++.+ ||-..|-|.+..||+..=..
T Consensus 170 ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~ 240 (267)
T PF10234_consen 170 AIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEI 240 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 34677889999999999999999999999999999999999888777 77889999999999887543
No 132
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=89.91 E-value=8.2 Score=37.05 Aligned_cols=108 Identities=22% Similarity=0.326 Sum_probs=55.4
Q ss_pred hHHHHHHHhhhhhHhhhhhHH---HHHHHH----HhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 74 SKDEIHRLGQIIPKLRADKEA---HTRELF----DRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTK 146 (264)
Q Consensus 74 aq~Elqrl~~~~~~l~ae~e~---q~R~l~----ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~q 146 (264)
|-+-|+-|-..+.+|+-|+-. |+-.|- ..-.|.|-+--...+||.|.+-+.-.+..|...||-|+-+++.-..
T Consensus 16 aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~ 95 (307)
T PF10481_consen 16 ALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKES 95 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHH
Confidence 445566666666666655542 222211 1122344444444555555555555555555555555544444333
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 024699 147 DVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKK 184 (264)
Q Consensus 147 eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk 184 (264)
.+.=+ -.|+...+..|+.|.+||.++++.+|--..
T Consensus 96 qv~~l---EgQl~s~Kkqie~Leqelkr~KsELErsQ~ 130 (307)
T PF10481_consen 96 QVNFL---EGQLNSCKKQIEKLEQELKRCKSELERSQQ 130 (307)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32222 235566666777777777777776664443
No 133
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=89.85 E-value=20 Score=34.73 Aligned_cols=50 Identities=16% Similarity=0.134 Sum_probs=23.5
Q ss_pred CCCchhhHHHHHHHHHHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhh
Q 024699 33 HFHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLR 89 (264)
Q Consensus 33 pp~P~~LEe~l~~Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ 89 (264)
|+.+.-|-.+++.-..+ |.-|-..--.++..-...+.|+..|......++
T Consensus 19 ~~t~~~l~~~~~sL~qe-------n~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~ 68 (310)
T PF09755_consen 19 SATREQLRKRIESLQQE-------NRVLKRELETEKARCKHLQEENRALREASVRIQ 68 (310)
T ss_pred CCchHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555554333 333333333344444555556666655544444
No 134
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=89.71 E-value=21 Score=39.47 Aligned_cols=100 Identities=17% Similarity=0.311 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH----
Q 024699 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQK---- 193 (264)
Q Consensus 118 ~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~---- 193 (264)
.||..++.+...|..+|--+.++.-.|.++|.+++-+.++.-+.+.+.-..=.+++-.=-.+-.+|.---|-.+.+
T Consensus 255 ~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~ev 334 (1243)
T KOG0971|consen 255 KELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEV 334 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4677777777788888888888888888888888888877776665543333333332222233443322322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 024699 194 QAMENNLISMAREIEKLRAELLNT 217 (264)
Q Consensus 194 qaMEknlismarEvEKLRaElana 217 (264)
-+....+-.|.-++|=|++|.+|-
T Consensus 335 e~lkEr~deletdlEILKaEmeek 358 (1243)
T KOG0971|consen 335 EALKERVDELETDLEILKAEMEEK 358 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 234455677888899999998875
No 135
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=89.64 E-value=9.5 Score=31.47 Aligned_cols=45 Identities=27% Similarity=0.332 Sum_probs=35.0
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 024699 176 RRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERR 220 (264)
Q Consensus 176 Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElanae~r 220 (264)
-.|+++-++.-..+-++...+++++.....+++.+...+.....+
T Consensus 93 ~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~ 137 (140)
T PRK03947 93 DEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQE 137 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777777788888888899888888888888887766544
No 136
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=89.63 E-value=26 Score=35.71 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhh
Q 024699 39 LEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQI 84 (264)
Q Consensus 39 LEe~l~~Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~ 84 (264)
+++++.--..+.+.|..|-----+.|.-|+||-.+..+=.+.|-..
T Consensus 220 i~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq 265 (502)
T KOG0982|consen 220 IERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQ 265 (502)
T ss_pred HHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHH
Confidence 4556666666777777665555567899999999999866555433
No 137
>PRK01156 chromosome segregation protein; Provisional
Probab=89.58 E-value=31 Score=36.55 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHH
Q 024699 144 LTKDVNRLEAENKQLIAMRADI 165 (264)
Q Consensus 144 l~qeL~r~~ad~qqipal~aEi 165 (264)
+.++|..+..+++.+-....++
T Consensus 310 l~~~l~~l~~~l~~~e~~~~~~ 331 (895)
T PRK01156 310 KKQILSNIDAEINKYHAIIKKL 331 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444443333333333
No 138
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=89.48 E-value=4.6 Score=35.38 Aligned_cols=55 Identities=16% Similarity=0.276 Sum_probs=5.9
Q ss_pred hhhHHHHHHHHHHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhh
Q 024699 37 MTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRAD 91 (264)
Q Consensus 37 ~~LEe~l~~Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae 91 (264)
.-+++++.....|+..+.-.+-.|+..=+.+-.+|...+.++......|..++++
T Consensus 70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~ 124 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAE 124 (194)
T ss_dssp --------------------------------------------HHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHH
Confidence 5678888888888888887777777666666666666666666665555555543
No 139
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=89.41 E-value=9.4 Score=30.35 Aligned_cols=32 Identities=28% Similarity=0.333 Sum_probs=18.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024699 184 KANEEQIEQKQAMENNLISMAREIEKLRAELL 215 (264)
Q Consensus 184 k~~~e~~Eq~qaMEknlismarEvEKLRaEla 215 (264)
+.-...-.++..+++++-.+..++.+|+..+.
T Consensus 94 ~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 94 KRLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445556666666666666666666554
No 140
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.24 E-value=32 Score=36.54 Aligned_cols=74 Identities=20% Similarity=0.348 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024699 143 GLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKK----ANEEQIEQKQAMENNLISMAREIEKLRAELLNTE 218 (264)
Q Consensus 143 ~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk----~~~e~~Eq~qaMEknlismarEvEKLRaElanae 218 (264)
.+.+||.+++..++. |++=|+.++.-+.+.+..++..++ ...=.--|++.+...|-.++.+|..|--++-+-.
T Consensus 636 ~~~~EL~~~~~~l~~---l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~ 712 (717)
T PF10168_consen 636 EFKKELERMKDQLQD---LKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGEEIDELVKQIKNIK 712 (717)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555544322 344444444444433333332221 1122346888999999999999999998887765
Q ss_pred h
Q 024699 219 R 219 (264)
Q Consensus 219 ~ 219 (264)
+
T Consensus 713 ~ 713 (717)
T PF10168_consen 713 K 713 (717)
T ss_pred H
Confidence 4
No 141
>PRK01156 chromosome segregation protein; Provisional
Probab=89.17 E-value=33 Score=36.33 Aligned_cols=40 Identities=18% Similarity=0.215 Sum_probs=16.9
Q ss_pred hhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 105 KLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGL 144 (264)
Q Consensus 105 KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l 144 (264)
.++.++...+..+.++.....++..+.....+|..++..+
T Consensus 623 ~le~~~~~le~~~~~l~~~~~~i~~~~~~i~~l~~~i~~l 662 (895)
T PRK01156 623 EIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQIAEI 662 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444444444433
No 142
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=89.03 E-value=27 Score=35.18 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhh
Q 024699 158 LIAMRADIDGIRSELVEARRAF 179 (264)
Q Consensus 158 ipal~aEie~lrqElqr~Raa~ 179 (264)
+|.|+.|.+.++.|++.++..|
T Consensus 276 l~~l~~E~~~~~ee~~~l~~Qi 297 (511)
T PF09787_consen 276 LEELKQERDHLQEEIQLLERQI 297 (511)
T ss_pred chhhHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777777776
No 143
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=88.75 E-value=23 Score=34.06 Aligned_cols=102 Identities=14% Similarity=0.220 Sum_probs=55.2
Q ss_pred HHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 024699 100 FDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (264)
Q Consensus 100 ~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 179 (264)
+.||..||. -.+-||.|-+|=.--+..|.++-|--. |+++.-+.|+-.|+.|.|.+.-.|
T Consensus 17 LqKIqelE~---QldkLkKE~qQrQfQleSlEAaLqKQK-----------------qK~e~ek~e~s~LkREnq~l~e~c 76 (307)
T PF10481_consen 17 LQKIQELEQ---QLDKLKKERQQRQFQLESLEAALQKQK-----------------QKVEEEKNEYSALKRENQSLMESC 76 (307)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHH-----------------HHHHHHhhhhhhhhhhhhhHHHHH
Confidence 456666666 445566666655555555444433332 334444556666666666666666
Q ss_pred hhhhhhhHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 024699 180 EFEKKANEEQIE--------------QKQAMENNLISMAREIEKLRAELLNTERRA 221 (264)
Q Consensus 180 EyEKk~~~e~~E--------------q~qaMEknlismarEvEKLRaElanae~ra 221 (264)
+..-|.+..+.. |+..-.+.+-.+..|+-+++.||+..-.-+
T Consensus 77 ~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~ 132 (307)
T PF10481_consen 77 ENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAA 132 (307)
T ss_pred HHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 665555554443 233333444555566666667777665444
No 144
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=88.69 E-value=14 Score=31.26 Aligned_cols=95 Identities=25% Similarity=0.381 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhh---hh-HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q 024699 117 RAEVVQLRAEVQKLNSSRQELTTQIKG---LTKDVNRLEAENK---QL-IAMRADIDGIRSELVEARRAFEFEKKANEEQ 189 (264)
Q Consensus 117 k~El~q~raE~q~L~~~RQeL~~qvq~---l~qeL~r~~ad~q---qi-pal~aEie~lrqElqr~Raa~EyEKk~~~e~ 189 (264)
-..+++++.|+.+....||.|..|++. ...||..+..|+. .| |.| ++||+--+|+.++ .+.|.
T Consensus 11 ~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvL------vkqel~EAr~nV~----kRlef 80 (120)
T KOG3478|consen 11 ANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVL------VKQELEEARTNVG----KRLEF 80 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchh------hHHHHHHHHhhHH----HHHHH
Confidence 366788888999999999999999987 7788888888763 12 222 5788888888764 22222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 024699 190 -IEQKQAMENNLISMAREIEKLRAELLNTERRA 221 (264)
Q Consensus 190 -~Eq~qaMEknlismarEvEKLRaElanae~ra 221 (264)
.-..+-.|+++-.+-+|.+|.|..+.+..+-+
T Consensus 81 I~~Eikr~e~~i~d~q~e~~k~R~~v~k~Q~~~ 113 (120)
T KOG3478|consen 81 ISKEIKRLENQIRDSQEEFEKQREAVIKLQQAA 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23467788899999999999999999887654
No 145
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=88.43 E-value=5.3 Score=36.76 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=21.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 024699 156 KQLIAMRADIDGIRSELVEARRAFEFEKK 184 (264)
Q Consensus 156 qqipal~aEie~lrqElqr~Raa~EyEKk 184 (264)
+|...+..|.|.|-.|.+++|..|+-..|
T Consensus 186 Kq~e~~~~EydrLlee~~~Lq~~i~~~~~ 214 (216)
T KOG1962|consen 186 KQSEGLQDEYDRLLEEYSKLQEQIESGGK 214 (216)
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHhccCC
Confidence 45556667888888888888888876544
No 146
>PRK12704 phosphodiesterase; Provisional
Probab=88.42 E-value=32 Score=35.15 Aligned_cols=55 Identities=16% Similarity=0.253 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 024699 137 LTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIE 191 (264)
Q Consensus 137 L~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~E 191 (264)
|..+.+.|.+....+...-+.|-....+|+...+++......++.-+......+|
T Consensus 91 L~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~ 145 (520)
T PRK12704 91 LLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELE 145 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444445555555555555555555554444443333333
No 147
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=88.29 E-value=20 Score=33.05 Aligned_cols=14 Identities=36% Similarity=0.525 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 024699 200 LISMAREIEKLRAE 213 (264)
Q Consensus 200 lismarEvEKLRaE 213 (264)
+.-+-.+|.++|.|
T Consensus 90 y~~Lk~~in~~R~e 103 (230)
T PF10146_consen 90 YKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344455555555
No 148
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=88.17 E-value=5 Score=33.56 Aligned_cols=86 Identities=15% Similarity=0.329 Sum_probs=41.2
Q ss_pred hhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHH
Q 024699 51 HRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKL 130 (264)
Q Consensus 51 qrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L 130 (264)
..|+..-++-....-.|-..+.....|+.+|...+..++. -.+.+..|+..+..+...|
T Consensus 41 ~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~---------------------~~~~~ere~~~~~~~~~~l 99 (151)
T PF11559_consen 41 YDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKE---------------------QLEELERELASAEEKERQL 99 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555555555555555555544441 1112334444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024699 131 NSSRQELTTQIKGLTKDVNRLEAENKQ 157 (264)
Q Consensus 131 ~~~RQeL~~qvq~l~qeL~r~~ad~qq 157 (264)
...-..+...+.....|++|++..+++
T Consensus 100 ~~~~~~~~~~~k~~kee~~klk~~~~~ 126 (151)
T PF11559_consen 100 QKQLKSLEAKLKQEKEELQKLKNQLQQ 126 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555554433
No 149
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=88.16 E-value=3 Score=30.94 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 024699 160 AMRADIDGIRSELVEARRAFE 180 (264)
Q Consensus 160 al~aEie~lrqElqr~Raa~E 180 (264)
+|++++...+.|-.|+-.-|+
T Consensus 28 ~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 28 ALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555666667666654443
No 150
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=88.10 E-value=12 Score=35.64 Aligned_cols=74 Identities=19% Similarity=0.333 Sum_probs=57.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhH
Q 024699 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANE 187 (264)
Q Consensus 114 e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~ 187 (264)
+.|-.-...+-.|..++...-..+.-+...+.++...+++++.+...++.-++.|..|||+-...+..|.+..+
T Consensus 25 ~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~ 98 (309)
T PF09728_consen 25 EALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRA 98 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666666666666777788889999999999999999999999999999999888877666433
No 151
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=87.83 E-value=13 Score=36.34 Aligned_cols=52 Identities=21% Similarity=0.291 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHH
Q 024699 137 LTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEE 188 (264)
Q Consensus 137 L~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e 188 (264)
|..+.+.|.++++.+++.+..+|....++..|..|++-.|+.|+--=..+.+
T Consensus 347 l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe 398 (458)
T COG3206 347 LEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRYQE 398 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777888888888888888888888888888888888777654443333
No 152
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.74 E-value=34 Score=34.81 Aligned_cols=46 Identities=20% Similarity=0.268 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 024699 166 DGIRSELVEARRAFEFEKKANEEQIEQK-------QAMENNLISMAREIEKLR 211 (264)
Q Consensus 166 e~lrqElqr~Raa~EyEKk~~~e~~Eq~-------qaMEknlismarEvEKLR 211 (264)
+.++.||+-++-+++.|.-...++-+|. ..-+-.+.|+..|.|.|+
T Consensus 437 e~l~~ei~~L~eqle~e~~~~~~le~ql~~~ve~c~~~~aS~~slk~e~erl~ 489 (542)
T KOG0993|consen 437 EDLVKEIQSLQEQLEKERQSEQELEWQLDDDVEQCSNCDASFASLKVEPERLH 489 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 6788899999999999988877765554 455666777888888876
No 153
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=87.56 E-value=49 Score=36.35 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhh
Q 024699 40 EEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQII 85 (264)
Q Consensus 40 Ee~l~~Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~ 85 (264)
+..+..-..++..+...-..+......+.+.+...+..+..+...+
T Consensus 529 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (1047)
T PRK10246 529 QSRLDALEKEVKKLGEEGAALRGQLDALTKQLQRDESEAQSLRQEE 574 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444432222233332333334444444444443333
No 154
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=87.48 E-value=10 Score=35.83 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=15.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhh
Q 024699 155 NKQLIAMRADIDGIRSELVEARRAF 179 (264)
Q Consensus 155 ~qqipal~aEie~lrqElqr~Raa~ 179 (264)
.-++-.++++|+.+++.|...+..+
T Consensus 241 ~P~v~~l~~~i~~l~~~i~~e~~~i 265 (362)
T TIGR01010 241 NPQVPSLQARIKSLRKQIDEQRNQL 265 (362)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHh
Confidence 5556666777777776666544433
No 155
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=87.44 E-value=0.17 Score=52.40 Aligned_cols=115 Identities=19% Similarity=0.266 Sum_probs=0.0
Q ss_pred hhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHhhhhhH
Q 024699 104 LKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKG------------------------LTKDVNRLEAENKQLI 159 (264)
Q Consensus 104 ~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~------------------------l~qeL~r~~ad~qqip 159 (264)
..|+.-|...+.+.+++..++.+++.|...+..-.+=.+. ++.++..+.+++.
T Consensus 291 ~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~--- 367 (722)
T PF05557_consen 291 RSLQRKLERLEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELR--- 367 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH---
Confidence 3344444555666666666666666666655554432222 2223333333332
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 024699 160 AMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRA 221 (264)
Q Consensus 160 al~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElanae~ra 221 (264)
.+...++.|..|+..+..-++..+.....+-....-+|+-.+-+.+|++-||+-|.+.++=.
T Consensus 368 ~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~ 429 (722)
T PF05557_consen 368 ELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEE 429 (722)
T ss_dssp --------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 23444555555666666666665555555555667789999999999999999999876543
No 156
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=87.35 E-value=37 Score=34.68 Aligned_cols=95 Identities=22% Similarity=0.375 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhh-----hHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH
Q 024699 127 VQKLNSSRQELTTQIKGLTKDVNRLEAE-----NKQ-----LIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAM 196 (264)
Q Consensus 127 ~q~L~~~RQeL~~qvq~l~qeL~r~~ad-----~qq-----ipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaM 196 (264)
++.|...++.|+.+-+.|..++-..++. +++ +--|+..|+..++.+. ..+..+.+.+..+.+|.+.|
T Consensus 101 ~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~---~~~~~~~~~~~~L~~qi~~L 177 (475)
T PRK10361 101 IRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQ---DSFGKEAQERHTLAHEIRNL 177 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777766655433321 111 2334445555554433 33445778889999999888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccc-CC
Q 024699 197 ENNLISMAREIEKLRAELLNTERRACG-LG 225 (264)
Q Consensus 197 EknlismarEvEKLRaElanae~ra~~-~~ 225 (264)
-+--..|..|..+|-.=|-. ++..+| ||
T Consensus 178 ~~~n~~i~~ea~nLt~ALkg-d~K~rG~WG 206 (475)
T PRK10361 178 QQLNAQMAQEAINLTRALKG-DNKTQGNWG 206 (475)
T ss_pred HHHHHHHHHHHHHHHHHHcC-CCCcCcchH
Confidence 77778899998888665532 333333 65
No 157
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=87.21 E-value=24 Score=35.73 Aligned_cols=96 Identities=20% Similarity=0.188 Sum_probs=54.6
Q ss_pred HHHHHHhhHHHHHHHhhhhhHhhhhhH---HHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 67 LQRELTASKDEIHRLGQIIPKLRADKE---AHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKG 143 (264)
Q Consensus 67 LrqeLaaaq~Elqrl~~~~~~l~ae~e---~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~ 143 (264)
+.|.|+.+.++|+.-...-..+.+++. +..+.+..+..+.|.+|+ -|+.|.-|+..|.=...+.-.-|+.++..
T Consensus 11 ~dqr~~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~---~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~ 87 (459)
T KOG0288|consen 11 NDQRLIDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELN---RLQEENTQLNEERVREEATEKTLTVDVLI 87 (459)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555444443344443333 345567777777787655 57777777777776666666666666666
Q ss_pred HHHHHHHHHHhhhhhHHHHHHH
Q 024699 144 LTKDVNRLEAENKQLIAMRADI 165 (264)
Q Consensus 144 l~qeL~r~~ad~qqipal~aEi 165 (264)
+..+=.|..-+...+..-++|+
T Consensus 88 ~en~~~r~~~eir~~~~q~~e~ 109 (459)
T KOG0288|consen 88 AENLRIRSLNEIRELREQKAEF 109 (459)
T ss_pred HHHHHHHHHHHHHHHHHhhhhh
Confidence 5555444444444443333443
No 158
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=87.20 E-value=36 Score=34.37 Aligned_cols=138 Identities=16% Similarity=0.261 Sum_probs=71.2
Q ss_pred HHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhh-HHhhhhc--hhHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 024699 66 HLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKL-EVELRAS--EPVRAEVV-QLRAEVQKLNSSRQELTTQI 141 (264)
Q Consensus 66 aLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~Km-EAelra~--e~lk~El~-q~raE~q~L~~~RQeL~~qv 141 (264)
.+..-+..++.++..|..-+..++++.+..+...+++..+= -..++.- ..++..+. +-..-...+...+.+|....
T Consensus 248 ~~~~~i~~a~~~i~~L~~~l~~l~~~~~~~l~~~L~~q~~e~~~~~~~~~~~~le~~~~~~~~~~~~e~~~~~~~l~~~~ 327 (582)
T PF09731_consen 248 DLNSLIAHAKERIDALQKELAELKEEEEEELERALEEQREELLSKLREELEQELEEKRAELEEELREEFEREREELEEKY 327 (582)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888888888888888877766555554443321 1111110 01111110 11111223333444444433
Q ss_pred HH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHH-----HHHhhhhhhhhhhhHHHHHH----HHHHHHHHHHHHH
Q 024699 142 KG-LTKDVNRLEAENKQLIAMRADIDGIRSEL-----VEARRAFEFEKKANEEQIEQ----KQAMENNLISMAR 205 (264)
Q Consensus 142 q~-l~qeL~r~~ad~qqipal~aEie~lrqEl-----qr~Raa~EyEKk~~~e~~Eq----~qaMEknlismar 205 (264)
+. |.++|.+..... .-.|+.++.....|+ +.+...++-|+.++...++. ++.+|+-+.+...
T Consensus 328 ~~~L~~eL~~~~~~~--~~~l~~~l~~~~~e~~~~~~~~i~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~~ 399 (582)
T PF09731_consen 328 EEELRQELKRQEEAH--EEHLKNELREQAIELQREFEKEIKEKVEQERNGRLAKLAELNSRLKALEEALDARSE 399 (582)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 555555554444 223555665666666 44588889999887766654 4556665555443
No 159
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=87.19 E-value=14 Score=36.10 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcc
Q 024699 199 NLISMAREIEKLRAELLNTERRA 221 (264)
Q Consensus 199 nlismarEvEKLRaElanae~ra 221 (264)
.||.+..=|-||+.||..++-|-
T Consensus 329 Plv~IKqAl~kLk~EI~qMdvrI 351 (359)
T PF10498_consen 329 PLVKIKQALTKLKQEIKQMDVRI 351 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Confidence 47778888999999999988775
No 160
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=87.17 E-value=37 Score=34.59 Aligned_cols=6 Identities=17% Similarity=0.667 Sum_probs=3.0
Q ss_pred hhhhcc
Q 024699 216 NTERRA 221 (264)
Q Consensus 216 nae~ra 221 (264)
++++.|
T Consensus 179 ~a~~~a 184 (514)
T TIGR03319 179 EADKKA 184 (514)
T ss_pred HHHHHH
Confidence 445554
No 161
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.14 E-value=13 Score=33.72 Aligned_cols=14 Identities=7% Similarity=0.442 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 024699 161 MRADIDGIRSELVE 174 (264)
Q Consensus 161 l~aEie~lrqElqr 174 (264)
|+.|.+.|++|+..
T Consensus 137 L~~~n~~L~~~l~~ 150 (206)
T PRK10884 137 LKEENQKLKNQLIV 150 (206)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 162
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=86.89 E-value=3.5 Score=28.74 Aligned_cols=34 Identities=29% Similarity=0.556 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 024699 130 LNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEA 175 (264)
Q Consensus 130 L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~ 175 (264)
|-...||+ ++.+.+||++++-+. ||++++||.+.
T Consensus 5 le~~KqEI---L~EvrkEl~K~K~EI---------IeA~~~eL~r~ 38 (40)
T PF08776_consen 5 LERLKQEI---LEEVRKELQKVKEEI---------IEAIRQELSRR 38 (40)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHH---------HHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHH---------HHHHHHHHhcc
Confidence 33444444 334566777666655 57778887764
No 163
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=86.80 E-value=22 Score=36.89 Aligned_cols=40 Identities=18% Similarity=0.328 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024699 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN 155 (264)
Q Consensus 116 lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~ 155 (264)
+.+|+..+...+..|...-..|..+...|..+|++++..+
T Consensus 153 leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l 192 (546)
T KOG0977|consen 153 LEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL 192 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444433
No 164
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=86.76 E-value=17 Score=30.14 Aligned_cols=67 Identities=22% Similarity=0.350 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhh----HHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 144 LTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKAN----EEQIEQKQAMENNLISMAREIEKL 210 (264)
Q Consensus 144 l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~----~e~~Eq~qaMEknlismarEvEKL 210 (264)
...||.+--.+++.|..++.++..++.++..+++..+-=+... ...-++.+.+++.+..+-.=++-|
T Consensus 47 YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL 117 (132)
T PF07926_consen 47 YERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDL 117 (132)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666677777777777666666666665555433332 233445555555554444444443
No 165
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.55 E-value=23 Score=36.31 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 120 VVQLRAEVQKLNSSRQELTTQIKG 143 (264)
Q Consensus 120 l~q~raE~q~L~~~RQeL~~qvq~ 143 (264)
|.++..-+..+..-+-+|+.|.+.
T Consensus 295 LaKL~~~l~~~~~~~~~ltqqwed 318 (521)
T KOG1937|consen 295 LAKLMGKLAELNKQMEELTQQWED 318 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555555544
No 166
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=86.52 E-value=43 Score=34.58 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=13.6
Q ss_pred HhhhhhHhhhhhHHHHHHHHHhhhhhHHhh
Q 024699 81 LGQIIPKLRADKEAHTRELFDRGLKLEVEL 110 (264)
Q Consensus 81 l~~~~~~l~ae~e~q~R~l~ek~~KmEAel 110 (264)
+...+..+....-.++-.+.++..++|.+|
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~el 407 (650)
T TIGR03185 378 LEVLIQQVKRELQDAKSQLLKELRELEEEL 407 (650)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344555555555555544
No 167
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=86.46 E-value=48 Score=35.55 Aligned_cols=55 Identities=27% Similarity=0.387 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH----HHHHHHHHHHHHHH---HHHHHHhhh
Q 024699 163 ADIDGIRSELVEARRAFEFEKKANEEQIEQKQ----AMENNLISMAREIE---KLRAELLNT 217 (264)
Q Consensus 163 aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~q----aMEknlismarEvE---KLRaElana 217 (264)
.|.|+|++||.|+--.+++-+.---|...-.. -||-=|-++..|=| .||-||..-
T Consensus 121 vefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~~~ 182 (717)
T PF09730_consen 121 VEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELDQH 182 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57788888888888777776654444333222 26666777777744 478887753
No 168
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=86.41 E-value=45 Score=38.06 Aligned_cols=44 Identities=18% Similarity=0.266 Sum_probs=29.9
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhHhhhhhH---HHHHHHHHhhhhhHH
Q 024699 65 THLQRELTASKDEIHRLGQIIPKLRADKE---AHTRELFDRGLKLEV 108 (264)
Q Consensus 65 vaLrqeLaaaq~Elqrl~~~~~~l~ae~e---~q~R~l~ek~~KmEA 108 (264)
-+-++.....-+|++-|-..|.++.+... -+|++|.++.++||-
T Consensus 1460 ~as~~q~~~s~~el~~Li~~v~~Flt~~~adp~si~~vA~~vL~l~l 1506 (1758)
T KOG0994|consen 1460 NASRSQMEESNRELRNLIQQVRDFLTQPDADPDSIEEVAEEVLALEL 1506 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccC
Confidence 34455666667777777777777766554 567777777777764
No 169
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=86.12 E-value=13 Score=28.17 Aligned_cols=83 Identities=18% Similarity=0.293 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q 024699 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLT--KDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQK 193 (264)
Q Consensus 116 lk~El~q~raE~q~L~~~RQeL~~qvq~l~--qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~ 193 (264)
...++.++...+..|...+.++...+.... -.+..+..-...+..|...|+.+.+++..++..++.-.+...+..-..
T Consensus 10 ~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~ 89 (123)
T PF02050_consen 10 AQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRER 89 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335555555555555555555544443333 111222333334555555555556666665555555555555555555
Q ss_pred HHHHH
Q 024699 194 QAMEN 198 (264)
Q Consensus 194 qaMEk 198 (264)
++||+
T Consensus 90 k~~e~ 94 (123)
T PF02050_consen 90 KKLEK 94 (123)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 170
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=85.85 E-value=55 Score=35.22 Aligned_cols=148 Identities=26% Similarity=0.340 Sum_probs=99.1
Q ss_pred cccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 60 AIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTT 139 (264)
Q Consensus 60 LaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~ 139 (264)
|-.+-..||-+|.....|+..-...+-.---..|.-.|.+.--..+.+..+. .+...+.-++..|..-...-.+|.-
T Consensus 539 Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k---~lenk~~~LrKqvEnk~K~ieeLqq 615 (786)
T PF05483_consen 539 LEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMK---ILENKCNNLRKQVENKNKNIEELQQ 615 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4444455677777777777776655554444555555655555555555333 4445555556666555555556666
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024699 140 QIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLN 216 (264)
Q Consensus 140 qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElan 216 (264)
+-..|.+. .-++..|+.++---|..|+-|+..+.--|+.+...+..-+|.-.+-|-||. -||+|++.-..-
T Consensus 616 eNk~LKKk---~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~---~EveK~k~~a~E 686 (786)
T PF05483_consen 616 ENKALKKK---ITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEELL---GEVEKAKLTADE 686 (786)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHHHHHH
Confidence 66666654 347788888888888888888888888888888888888888888887764 477777765443
No 171
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=85.82 E-value=5 Score=42.18 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 024699 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (264)
Q Consensus 116 lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~E 180 (264)
++.=+.-|+-|+-.|.+-||+|.+++..++.. |.+++.+|..-++||.++...||
T Consensus 84 ~~RI~~sVs~EL~ele~krqel~seI~~~n~k----------iEelk~~i~~~q~eL~~Lk~~ie 138 (907)
T KOG2264|consen 84 QKRILASVSLELTELEVKRQELNSEIEEINTK----------IEELKRLIPQKQLELSALKGEIE 138 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----------HHHHHHHHHHhHHHHHHHHhHHH
Confidence 33334445556667777788888887776554 44556666666666666655444
No 172
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=85.62 E-value=24 Score=38.05 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=16.8
Q ss_pred chhhHHHHHHHHHHhhhhccccc
Q 024699 36 PMTLEEEIEIQRREMHRIISENR 58 (264)
Q Consensus 36 P~~LEe~l~~Q~~EiqrLl~dNq 58 (264)
.+-||+.|+-+.++...+..-|.
T Consensus 93 ndklE~~Lankda~lrq~eekn~ 115 (916)
T KOG0249|consen 93 NDKLENELANKDADLRQNEEKNR 115 (916)
T ss_pred hHHHHHHHhCcchhhchhHHhhh
Confidence 46688888888888776666553
No 173
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=85.55 E-value=7 Score=35.57 Aligned_cols=55 Identities=22% Similarity=0.254 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024699 163 ADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNT 217 (264)
Q Consensus 163 aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElana 217 (264)
+++++++|-+-.++--||.+|.++-+--|---..++.+.+.-.+++-||.||++.
T Consensus 88 ~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~ 142 (203)
T KOG3433|consen 88 SQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKI 142 (203)
T ss_pred HHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455556677776665544444477777777777788888887765
No 174
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=85.54 E-value=13 Score=31.61 Aligned_cols=59 Identities=20% Similarity=0.404 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Q 024699 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARR 177 (264)
Q Consensus 118 ~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Ra 177 (264)
.|+.+++.++..|......|.+++..|++.+.-... ..+|..|..|++.|..-|..+|+
T Consensus 79 ~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el-~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 79 AEIKELREELAELKKEVKSLEAELASLSSEPTNEEL-REEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444333321111 12344445555555555555554
No 175
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=85.48 E-value=15 Score=31.37 Aligned_cols=67 Identities=24% Similarity=0.395 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 024699 117 RAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKK 184 (264)
Q Consensus 117 k~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk 184 (264)
..|+..+..++..|...-.+|..++..+..+|..+.+.. ....|...|..|.+|+..+.+-++.-+.
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~-t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEP-TNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777777777777777777777777777777666654 3446777888888887777777665544
No 176
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=85.21 E-value=45 Score=33.64 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 166 DGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAE 213 (264)
Q Consensus 166 e~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaE 213 (264)
+-+++|-+...+.++-+..+....++.+++=+.. +..+|.+++++
T Consensus 202 ~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~---L~~~Ias~e~~ 246 (420)
T COG4942 202 AQLLEERKKTLAQLNSELSADQKKLEELRANESR---LKNEIASAEAA 246 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHH
Confidence 3444444444444444444444444444444433 34445555433
No 177
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=85.16 E-value=29 Score=32.02 Aligned_cols=36 Identities=14% Similarity=0.073 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHH
Q 024699 163 ADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMEN 198 (264)
Q Consensus 163 aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEk 198 (264)
.+++.+....+...+......+.+...+....+|..
T Consensus 218 ~~~~~l~~~~~~~~a~~~~~~~~~~G~l~R~~Al~~ 253 (301)
T PF14362_consen 218 ARKARLDEARQAKVAEFQAIISANDGFLARLEALWE 253 (301)
T ss_pred HHHHHHHHHHHHHHHHHhHhhccCCCHHHHHHHHHH
Confidence 566666666666666666666777777777777754
No 178
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=85.12 E-value=59 Score=34.97 Aligned_cols=108 Identities=19% Similarity=0.330 Sum_probs=62.1
Q ss_pred HHHHHHhhhhcccccccccc---hHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHH
Q 024699 44 EIQRREMHRIISENRHAIDD---NTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEV 120 (264)
Q Consensus 44 ~~Q~~EiqrLl~dNqRLaat---hvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El 120 (264)
+.+-.|+...|..|+.|... -..+..+|.++.+||-.+..+...=-.|-+.++-.+...-...=- .++.||.||
T Consensus 404 e~eleeL~~~L~e~qkll~ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~ysk---QVeeLKtEL 480 (786)
T PF05483_consen 404 EVELEELKKILAEKQKLLDEKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSK---QVEELKTEL 480 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHH---HHHHHHHHH
Confidence 45666777888888877654 345567888888888888766665555666666655554433322 455666666
Q ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024699 121 VQLR-------AEVQKLNSSRQELTTQIKGLTKDVNRLEAE 154 (264)
Q Consensus 121 ~q~r-------aE~q~L~~~RQeL~~qvq~l~qeL~r~~ad 154 (264)
.+-. +-+.+|......|.-+...+.-+|.+.+.|
T Consensus 481 E~EkLKN~ELt~~~nkLslEkk~laQE~~~~~~elKk~qed 521 (786)
T PF05483_consen 481 EQEKLKNTELTVNCNKLSLEKKQLAQETSDMALELKKQQED 521 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 6522 222333333444444444444444444443
No 179
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=85.05 E-value=16 Score=29.45 Aligned_cols=71 Identities=14% Similarity=0.254 Sum_probs=52.0
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 024699 112 ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKAN 186 (264)
Q Consensus 112 a~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~ 186 (264)
+.-.+..+|..++.+--.|...-++|..+++.++++...-.. -+.++.+|+.++.+++..|.-..--|...
T Consensus 11 ~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~----~~~~~~~l~~~~~~lk~~r~~~~v~k~v~ 81 (106)
T PF05837_consen 11 ESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE----DEELSEKLEKLEKELKKSRQRWRVMKNVF 81 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556777777777777888888888888888877654444 57788899999999988887665555443
No 180
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=84.97 E-value=38 Score=32.68 Aligned_cols=31 Identities=26% Similarity=0.266 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hhhhccc
Q 024699 192 QKQAMENNLISMAREIEKLRAELL-NTERRAC 222 (264)
Q Consensus 192 q~qaMEknlismarEvEKLRaEla-nae~ra~ 222 (264)
+....+.++.....++.+++.++. ++.-||.
T Consensus 228 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~i~AP 259 (421)
T TIGR03794 228 ELETVEARIKEARYEIEELENKLNLNTRIVSQ 259 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCeEEcC
Confidence 345555667777778888888887 4666664
No 181
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=84.77 E-value=18 Score=30.70 Aligned_cols=62 Identities=15% Similarity=0.341 Sum_probs=42.3
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 024699 112 ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (264)
Q Consensus 112 a~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 179 (264)
+...+-+-|.||.. .|.+.|.+|+.+++.+...|.....=.+ .++.|+..++..+.+.+..+
T Consensus 44 A~~~v~kql~~vs~---~l~~tKkhLsqRId~vd~klDe~~ei~~---~i~~eV~~v~~dv~~i~~dv 105 (126)
T PF07889_consen 44 AVASVSKQLEQVSE---SLSSTKKHLSQRIDRVDDKLDEQKEISK---QIKDEVTEVREDVSQIGDDV 105 (126)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhHHHHHHHHH---HHHHHHHHHHhhHHHHHHHH
Confidence 56778888999988 7888999999999999888776554332 23344444444444444443
No 182
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=84.65 E-value=22 Score=29.66 Aligned_cols=47 Identities=17% Similarity=0.430 Sum_probs=25.8
Q ss_pred HhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024699 108 VELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE 154 (264)
Q Consensus 108 Aelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad 154 (264)
-++...+.+-..+..+.+|+..|...-+-|..++..+..++.-++++
T Consensus 49 r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~ 95 (151)
T PF11559_consen 49 RDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEK 95 (151)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555556666665555555555555555555544443
No 183
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=84.65 E-value=29 Score=31.06 Aligned_cols=88 Identities=17% Similarity=0.245 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-----HHHHHHHHHHHHhhhhhhhhhhhHH
Q 024699 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRA-----DIDGIRSELVEARRAFEFEKKANEE 188 (264)
Q Consensus 114 e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~a-----Eie~lrqElqr~Raa~EyEKk~~~e 188 (264)
.....|+..++..+.+....-.++..++.....+|.+....++.+-.|.. |.+.|.++|..+...++-..+...+
T Consensus 64 ~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~ 143 (194)
T PF15619_consen 64 QRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQE 143 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666666666666666666666666666666666655543 5677777777777777766666555
Q ss_pred HHHHHHHHHHHHH
Q 024699 189 QIEQKQAMENNLI 201 (264)
Q Consensus 189 ~~Eq~qaMEknli 201 (264)
+--|.....+|+.
T Consensus 144 Lek~leL~~k~~~ 156 (194)
T PF15619_consen 144 LEKQLELENKSFR 156 (194)
T ss_pred HHHHHHHHhhHHH
Confidence 5555555555543
No 184
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=84.57 E-value=50 Score=33.65 Aligned_cols=145 Identities=23% Similarity=0.338 Sum_probs=80.5
Q ss_pred HHHHhhHHHHHHHh-----hhhhHhhhhhHHHHHH---HHHhhhhhHHhhhhchhHH----HHHHHHHHHHHHHHHHH--
Q 024699 69 RELTASKDEIHRLG-----QIIPKLRADKEAHTRE---LFDRGLKLEVELRASEPVR----AEVVQLRAEVQKLNSSR-- 134 (264)
Q Consensus 69 qeLaaaq~Elqrl~-----~~~~~l~ae~e~q~R~---l~ek~~KmEAelra~e~lk----~El~q~raE~q~L~~~R-- 134 (264)
.||...++|-.+|. ++|.+|.+=+-.+--+ -++|+.-+-.+ +++|| .||+.|.-|++.|...=
T Consensus 363 RELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsd---veaLRrQyleelqsvqRELeVLSEQYSQ 439 (593)
T KOG4807|consen 363 RELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSD---VEALRRQYLEELQSVQRELEVLSEQYSQ 439 (593)
T ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccC---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666654 3455555444332222 23344333322 23333 35555555555554311
Q ss_pred -----HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHHHhhhhhhh-----------hhhhHHHHHHHHHHH
Q 024699 135 -----QELTTQIKGLTKDVNRLEAENKQLIAMRADI-DGIRSELVEARRAFEFE-----------KKANEEQIEQKQAME 197 (264)
Q Consensus 135 -----QeL~~qvq~l~qeL~r~~ad~qqipal~aEi-e~lrqElqr~Raa~EyE-----------Kk~~~e~~Eq~qaME 197 (264)
--|...+..-.+-|-+-+-++|.+.+--.|+ ..|-.||.++|+-+--. |.++ |+-==+.+-|
T Consensus 440 KCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtGsplaqgkday-ELEVLLRVKE 518 (593)
T KOG4807|consen 440 KCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTGSPLAQGKDAY-ELEVLLRVKE 518 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCCCccccCcchh-hHHHHHHhhH
Confidence 1122333334445566777888888888888 45778888888654322 2221 1112245566
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 024699 198 NNLISMAREIEKLRAELLNT 217 (264)
Q Consensus 198 knlismarEvEKLRaElana 217 (264)
..+--+..||.-|+-||..+
T Consensus 519 sEiQYLKqEissLkDELQta 538 (593)
T KOG4807|consen 519 SEIQYLKQEISSLKDELQTA 538 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66777889999999999887
No 185
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=84.56 E-value=65 Score=34.94 Aligned_cols=50 Identities=24% Similarity=0.322 Sum_probs=32.5
Q ss_pred chHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhch
Q 024699 63 DNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASE 114 (264)
Q Consensus 63 thvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e 114 (264)
..-+||.++-..+.|++- +...+.-+|++-+|+.|+.-+-||-.+.-+..
T Consensus 424 ERDalr~e~kslk~ela~--~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs 473 (961)
T KOG4673|consen 424 ERDALRREQKSLKKELAA--ALLKDELAEKDEIINQLMAEGEKLSKKQLAQS 473 (961)
T ss_pred hHHHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 455677777777777652 33345777888888888887776665443333
No 186
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=84.50 E-value=44 Score=35.81 Aligned_cols=83 Identities=28% Similarity=0.388 Sum_probs=55.1
Q ss_pred HHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----------HHHHHHH
Q 024699 97 RELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL-----------IAMRADI 165 (264)
Q Consensus 97 R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqi-----------pal~aEi 165 (264)
-.+..++..||+||+- +|.++.-+++|..+|...-++|....+.+..+..+++.|++.. ..|..|.
T Consensus 30 ~~~~~~i~~l~~elk~---~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeEN 106 (717)
T PF09730_consen 30 AYLQQRILELENELKQ---LRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEEN 106 (717)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 4567788888887774 6778888888888888888888888777777777666665433 3344444
Q ss_pred HHHHHHHHHHhh-hhhhh
Q 024699 166 DGIRSELVEARR-AFEFE 182 (264)
Q Consensus 166 e~lrqElqr~Ra-a~EyE 182 (264)
=+|+.-+.-+|. .+|||
T Consensus 107 islQKqvs~Lk~sQvefE 124 (717)
T PF09730_consen 107 ISLQKQVSVLKQSQVEFE 124 (717)
T ss_pred HHHHHHHHHHHHhHHHHH
Confidence 445555555542 34554
No 187
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=84.39 E-value=32 Score=31.33 Aligned_cols=147 Identities=20% Similarity=0.231 Sum_probs=84.6
Q ss_pred CCchhhHHHHHHHHHHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhc
Q 024699 34 FHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRAS 113 (264)
Q Consensus 34 p~P~~LEe~l~~Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~ 113 (264)
|+|--|+-.++--..+++.+..... .-+.-+.....++..|...+..++ -++.....++-++.. ..
T Consensus 17 ~~~~~l~~~~e~~~~~L~~~~~~~~-------~~~~~~~~~e~~l~~L~~d~~~L~----~k~~~~~~~~~~l~~---~t 82 (264)
T PF06008_consen 17 PAPYKLLSSIEDLTNQLRSYRSKLN-------PQKQQLDPLEKELESLEQDVENLQ----EKATKVSRKAQQLNN---NT 82 (264)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccch-------hHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH---HH
Confidence 5666666666666666665554332 233455555555555555555544 222233344444433 44
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-----HHHhhhhhhhhhhhHH
Q 024699 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSEL-----VEARRAFEFEKKANEE 188 (264)
Q Consensus 114 e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqEl-----qr~Raa~EyEKk~~~e 188 (264)
+.+......+...|+.|...-++|..++..+.. .-.......++.+.+|++.|=+|+ ..-|..-+.|++.-.+
T Consensus 83 ~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~--~~~~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~ 160 (264)
T PF06008_consen 83 ERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE--NGDQLPSEDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAED 160 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--ccCCCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555444 111225566777778888887777 4567777888888888
Q ss_pred HHHHHHHH
Q 024699 189 QIEQKQAM 196 (264)
Q Consensus 189 ~~Eq~qaM 196 (264)
++..++.-
T Consensus 161 LL~~v~~~ 168 (264)
T PF06008_consen 161 LLSRVQKW 168 (264)
T ss_pred HHHHHHHH
Confidence 88877764
No 188
>PF12592 DUF3763: Protein of unknown function (DUF3763); InterPro: IPR022547 This domain is found in bacterial regulartory ATPases 3.6.3. from EC, and is approximately 60 amino acids in length. The domain is found C-terminal to PF07728 from PFAM. There is a single completely conserved residue F that may be functionally important. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; PDB: 3NBX_X.
Probab=84.37 E-value=4.4 Score=29.92 Aligned_cols=55 Identities=24% Similarity=0.234 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 158 LIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRA 212 (264)
Q Consensus 158 ipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRa 212 (264)
-..+.++|+.+.++|.+.|+-|.---.-+.-.-+=.-.||..|..++..|+.++.
T Consensus 2 ~~e~~~qL~~~~~~l~~qR~~F~~~qPhlFI~~~wl~~IE~Sl~~l~eqL~q~~~ 56 (57)
T PF12592_consen 2 PEEALAQLDEAEHELRQQRSLFHQHQPHLFIDSEWLAAIEASLQQLAEQLEQLKQ 56 (57)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTT---TTS-HHHHHHHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCcCcCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567799999999999999999988887777788889999999999999998874
No 189
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=84.36 E-value=30 Score=30.94 Aligned_cols=36 Identities=17% Similarity=0.391 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVN 149 (264)
Q Consensus 114 e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~ 149 (264)
..++.++.+.+..+..|....+.+..+++...+.+.
T Consensus 59 ~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~ 94 (302)
T PF10186_consen 59 QQLKREIEELRERLERLRERIERLRKRIEQKRERLE 94 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433333
No 190
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=84.23 E-value=12 Score=37.39 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=12.9
Q ss_pred HHHHHHHhhHHHHHHHhhhhhHhh
Q 024699 66 HLQRELTASKDEIHRLGQIIPKLR 89 (264)
Q Consensus 66 aLrqeLaaaq~Elqrl~~~~~~l~ 89 (264)
.|+++|..++.++.++...+..++
T Consensus 75 ~l~~~l~~l~~~~~~~~~~~~~~~ 98 (525)
T TIGR02231 75 ELRKQIRELEAELRDLEDRGDALK 98 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555444444
No 191
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=84.15 E-value=76 Score=35.43 Aligned_cols=111 Identities=20% Similarity=0.280 Sum_probs=78.6
Q ss_pred hhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHHHHHHhh
Q 024699 102 RGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN----KQLIAMRADIDGIRSELVEARR 177 (264)
Q Consensus 102 k~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~----qqipal~aEie~lrqElqr~Ra 177 (264)
.-.+..+...+.+-+|.++..+--+++.+...+.+|-.++..+..+....+.++ ..+-.+-..++.+.+++...-.
T Consensus 246 ~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~ 325 (1072)
T KOG0979|consen 246 HDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKN 325 (1072)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777788888999999999998888888888887777777666666554 3344455566778888888888
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024699 178 AFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTER 219 (264)
Q Consensus 178 a~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElanae~ 219 (264)
+.|+-|+.--.. .+++..-..++..+++||.+++.
T Consensus 326 ~le~lk~~~~~r-------q~~i~~~~k~i~~~q~el~~~~~ 360 (1072)
T KOG0979|consen 326 KLESLKKAAEKR-------QKRIEKAKKMILDAQAELQETED 360 (1072)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhhhcCC
Confidence 877776653332 34566666677777777777654
No 192
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=83.91 E-value=41 Score=32.39 Aligned_cols=101 Identities=14% Similarity=0.241 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHHHhhhhh-hhhh-------
Q 024699 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEA--ENKQLIAMRADIDGIRSELVEARRAFE-FEKK------- 184 (264)
Q Consensus 115 ~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~a--d~qqipal~aEie~lrqElqr~Raa~E-yEKk------- 184 (264)
.+-+..+|+|-++..++..-.++..+++.|+.-=-+... =...|++.+.+|+.++.++..++..|+ |.+.
T Consensus 38 ~~yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~ 117 (301)
T PF06120_consen 38 YFYQNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGIT 117 (301)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 456788899999999999999999999887654333222 134678888888888888888888874 4332
Q ss_pred --hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024699 185 --AN-EEQIEQKQAMENNLISMAREIEKLRAELL 215 (264)
Q Consensus 185 --~~-~e~~Eq~qaMEknlismarEvEKLRaEla 215 (264)
++ ..++.........+....+++.+....+.
T Consensus 118 ~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~ 151 (301)
T PF06120_consen 118 ENGYIINHLMSQADATRKLAEATRELAVAQERLE 151 (301)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 22233444445555555555544444433
No 193
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=83.83 E-value=23 Score=36.91 Aligned_cols=116 Identities=18% Similarity=0.248 Sum_probs=72.9
Q ss_pred HHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Q 024699 97 RELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEAR 176 (264)
Q Consensus 97 R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~R 176 (264)
+...+|+--||.|+. .++.+.+-++.-|..|...|.||+-+|-.|+.-.+-++- -+-.-+-|+- .=+-++=
T Consensus 593 kG~Aeki~~me~Ei~---glq~DkQ~ar~qIh~Le~~Reelsk~V~DLtssaQgakK---AVhdaK~ElA---~~Y~klL 663 (790)
T PF07794_consen 593 KGYAEKIGFMEMEIG---GLQADKQTARNQIHRLEQRREELSKRVMDLTSSAQGAKK---AVHDAKVELA---AAYSKLL 663 (790)
T ss_pred hhhHhhhhhhhhhhc---chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHH---HHHHHHH
Confidence 567788889998665 678889999999999999999999999987754332222 1111122221 1122222
Q ss_pred hhhhh---hhhhhHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 024699 177 RAFEF---EKKANEEQIEQ----------KQAMENNLISMAREIEKLRAELLNTERRA 221 (264)
Q Consensus 177 aa~Ey---EKk~~~e~~Eq----------~qaMEknlismarEvEKLRaElanae~ra 221 (264)
+.|+. -||-+.-+..| ..-|-||-|..+-|-..|.|||-.++.+-
T Consensus 664 agiKEKwv~KKe~t~le~qAaEvesNlaLidqi~kaaIdltvEkprlqAeLdd~ea~c 721 (790)
T PF07794_consen 664 AGIKEKWVAKKEYTVLEGQAAEVESNLALIDQITKAAIDLTVEKPRLQAELDDLEARC 721 (790)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHhhchHHHhhh
Confidence 22221 13333333333 33466777888888888999998887653
No 194
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=83.67 E-value=22 Score=34.35 Aligned_cols=93 Identities=22% Similarity=0.302 Sum_probs=55.4
Q ss_pred HhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhc-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 72 TASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRAS-----EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTK 146 (264)
Q Consensus 72 aaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~-----e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~q 146 (264)
...=.||||..+.+..-+.--+-+|-.-+.++-.-=++|+.. ++|-+|+..|.+|+-.|..+||.=...+..||.
T Consensus 156 EKSvKDLqRctvSL~RYr~~lkee~d~S~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL~aRqkkAeeLkrltd 235 (302)
T PF07139_consen 156 EKSVKDLQRCTVSLTRYRVVLKEEMDSSIKKIKQTFAELQSCLMDREVALLAEMDKVKAEAMEILDARQKKAEELKRLTD 235 (302)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433333333333333333333333332 478899999999999999999998888888887
Q ss_pred HHHHHHHhhhhhHHHHHHHH
Q 024699 147 DVNRLEAENKQLIAMRADID 166 (264)
Q Consensus 147 eL~r~~ad~qqipal~aEie 166 (264)
--.++. =.||..|||||-
T Consensus 236 ~A~~Ms--E~Ql~ELRadIK 253 (302)
T PF07139_consen 236 RASQMS--EEQLAELRADIK 253 (302)
T ss_pred HHhhcC--HHHHHHHHHHHH
Confidence 644332 235666666653
No 195
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.41 E-value=7.6 Score=38.19 Aligned_cols=83 Identities=20% Similarity=0.220 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 024699 124 RAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ-LIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLIS 202 (264)
Q Consensus 124 raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qq-ipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlis 202 (264)
++...+|-..++|-+...+.+...|.|-.-++.. .-.|+++++.|.|+++.+-..||--|+.-.|++|-....+-+=|.
T Consensus 213 sa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n~~~~~~D 292 (365)
T KOG2391|consen 213 SAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAENLEALDID 292 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccCcCCCch
Confidence 3444455555555555555555566555555433 345677788888888888888888888888877766655555555
Q ss_pred HHHH
Q 024699 203 MARE 206 (264)
Q Consensus 203 marE 206 (264)
++.+
T Consensus 293 ~~~~ 296 (365)
T KOG2391|consen 293 EAIE 296 (365)
T ss_pred hhhh
Confidence 5554
No 196
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=83.08 E-value=22 Score=37.49 Aligned_cols=63 Identities=19% Similarity=0.261 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHH-Hhhhhhc
Q 024699 157 QLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLI-SMAREIEKLRAE-LLNTERR 220 (264)
Q Consensus 157 qipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknli-smarEvEKLRaE-lanae~r 220 (264)
.+-++..+|+.|+.+|+.-...+|.-++ ....+.+++.||-.=- .=...|+||+-+ |+.++..
T Consensus 475 ei~~~~~~I~~L~~~L~e~~~~ve~L~~-~l~~l~k~~~lE~sG~g~pvk~ve~~t~~~Ie~~e~~ 539 (652)
T COG2433 475 EIRARDRRIERLEKELEEKKKRVEELER-KLAELRKMRKLELSGKGTPVKVVEKLTLEAIEEAEEE 539 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhcCCCcceehhhhhhHHHHHhHHHh
Confidence 3445555566666666655555554433 2344555555553211 011457777644 5555433
No 197
>PF04626 DEC-1_C: Dec-1 protein, C terminal region; InterPro: IPR006720 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). Alternative splicing generates different carboxy terminal ends in different protein isoforms. This domain is the most C-terminal region that is present in the main isoforms.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=82.87 E-value=0.7 Score=39.20 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=18.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC
Q 024699 226 GSAYGLLNGCPDMRYPGGAFDNGYG 250 (264)
Q Consensus 226 g~~Yg~~yg~p~~~~~~~~Y~~~Yg 250 (264)
...||.+|| .+||.+|+|+.+|+
T Consensus 74 ~~sYgtsYg--~ggyGsnaYG~~~~ 96 (132)
T PF04626_consen 74 VQSYGTSYG--GGGYGSNAYGVQRS 96 (132)
T ss_pred ecccceeec--CCcccccccCCCcC
Confidence 367888887 57888899998776
No 198
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=82.52 E-value=13 Score=29.25 Aligned_cols=37 Identities=27% Similarity=0.395 Sum_probs=18.4
Q ss_pred hhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 110 LRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTK 146 (264)
Q Consensus 110 lra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~q 146 (264)
+-..-.+-.+..++..+++.|.+.|..++.+|..+..
T Consensus 28 vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~ 64 (108)
T PF02403_consen 28 VDEIIELDQERRELQQELEELRAERNELSKEIGKLKK 64 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 3333334444455555555555555555555554443
No 199
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=82.46 E-value=52 Score=32.24 Aligned_cols=55 Identities=13% Similarity=0.224 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024699 163 ADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNT 217 (264)
Q Consensus 163 aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElana 217 (264)
..++.+.+|+..++..+.--+..+.+..+-+..+.+-|-.+.-|+|+...++...
T Consensus 266 ~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 266 NQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667778888888888888888888888888888888889999999999887654
No 200
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=81.97 E-value=64 Score=32.98 Aligned_cols=45 Identities=16% Similarity=0.134 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 024699 158 LIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLIS 202 (264)
Q Consensus 158 ipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlis 202 (264)
|-..+..|+.+..+-.+.|+++..+=+.=.+.-.++..=-.||..
T Consensus 149 l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ 193 (475)
T PRK10361 149 LDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTR 193 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555554444433444444443444443
No 201
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=81.94 E-value=11 Score=28.59 Aligned_cols=47 Identities=15% Similarity=0.103 Sum_probs=34.3
Q ss_pred cccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhh
Q 024699 58 RHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGL 104 (264)
Q Consensus 58 qRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~ 104 (264)
++|-++..+|+-.|..+...+...-..+..|..|+|.-++.|-+...
T Consensus 1 ~~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~ 47 (69)
T PF14197_consen 1 QKLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYE 47 (69)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778888888888888888888888888888865555544433
No 202
>PRK00106 hypothetical protein; Provisional
Probab=81.82 E-value=68 Score=33.18 Aligned_cols=55 Identities=16% Similarity=0.244 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 024699 137 LTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIE 191 (264)
Q Consensus 137 L~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~E 191 (264)
|..+-+.|.+....+...-+.+-....+|+...+++......++--.......+|
T Consensus 106 L~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le 160 (535)
T PRK00106 106 LTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELE 160 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444445555555555566666666555555444433333333
No 203
>PF08912 Rho_Binding: Rho Binding; InterPro: IPR015008 Rho is responsible for the recognition and binding of Rho binding domain-containing proteins (such as ROCK) to Rho, resulting in activation of the GTPase which in turn modulates the phosphorylation of various signalling proteins. This domain is within an amphipathic alpha-helical coiled-coil and interacts with Rho through predominantly hydrophobic interactions []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0000910 cytokinesis, 0006468 protein phosphorylation; PDB: 1UIX_A 1S1C_X.
Probab=81.80 E-value=7.5 Score=30.00 Aligned_cols=42 Identities=21% Similarity=0.497 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q 024699 123 LRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRAD 164 (264)
Q Consensus 123 ~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aE 164 (264)
+..++..|.....||..++..+.+++.+.+.+.+++..+++.
T Consensus 1 L~kdv~~l~~EkeeL~~klk~~qeel~~~k~~~~~~~~ik~~ 42 (69)
T PF08912_consen 1 LTKDVANLAKEKEELNNKLKKQQEELQKLKEEEQEIEEIKAQ 42 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888999999999999999999999988888666666554
No 204
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=81.68 E-value=16 Score=27.84 Aligned_cols=56 Identities=36% Similarity=0.523 Sum_probs=31.9
Q ss_pred HhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 87 KLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (264)
Q Consensus 87 ~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ 152 (264)
+.=+|+|.+|-.|++-+-+|.. .|+ +...-|.+|-+.-.++..++..+...+..+.
T Consensus 5 ~~l~EKDe~Ia~L~eEGekLSk---------~el-~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e 60 (74)
T PF12329_consen 5 KKLAEKDEQIAQLMEEGEKLSK---------KEL-KLNNTIKKLRAKIKELEKQIKELKKKLEELE 60 (74)
T ss_pred HHHHhHHHHHHHHHHHHHHHHH---------HHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446889999998888877765 222 2233344544444445555555544444333
No 205
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=81.62 E-value=27 Score=33.27 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHhhhhhHhh
Q 024699 68 QRELTASKDEIHRLGQIIPKLR 89 (264)
Q Consensus 68 rqeLaaaq~Elqrl~~~~~~l~ 89 (264)
+.++..+..|..........++
T Consensus 15 ~~~~~~~~~E~~~Y~~fL~~l~ 36 (314)
T PF04111_consen 15 DKQLEQAEKERDTYQEFLKKLE 36 (314)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 206
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=81.54 E-value=98 Score=34.84 Aligned_cols=155 Identities=17% Similarity=0.206 Sum_probs=99.4
Q ss_pred cccchHHHHHHHHhhHHHHHHHhhhhhHhhhhh-------H--------------HHHHHHHHhhhhhHHhhhhchhHHH
Q 024699 60 AIDDNTHLQRELTASKDEIHRLGQIIPKLRADK-------E--------------AHTRELFDRGLKLEVELRASEPVRA 118 (264)
Q Consensus 60 LaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~-------e--------------~q~R~l~ek~~KmEAelra~e~lk~ 118 (264)
|.+..--|+.+++.|..+.+..-.-...|.+|+ + .|.--.+=+.-+.|+ ..+-+..
T Consensus 158 lK~EYeelK~E~~kAE~~t~~~~~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~~L~qLfhvE~---~i~k~~~ 234 (1141)
T KOG0018|consen 158 LKPEYEELKYEMAKAEETTTGNYKKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWELFHVEA---CIEKAND 234 (1141)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hHhhhhH
Confidence 556677788888888888888877777777776 1 111122223444555 4456667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-----------------HHHHHHhhhhhh
Q 024699 119 EVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIR-----------------SELVEARRAFEF 181 (264)
Q Consensus 119 El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lr-----------------qElqr~Raa~Ey 181 (264)
||....+|+.+|...+..-..++....++..+..-+++++.....+.+.+- ..|......++-
T Consensus 235 els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~~~~k~rl~~~~k~i~~ 314 (1141)
T KOG0018|consen 235 ELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENASHLKKRLEEIEKDIET 314 (1141)
T ss_pred HHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhhccchhHHHHhhhhHHH
Confidence 888888888888887777777777766666666666666655554444333 333444445555
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024699 182 EKKANEEQIEQKQAMENNLISMAREIEKLRAELLNT 217 (264)
Q Consensus 182 EKk~~~e~~Eq~qaMEknlismarEvEKLRaElana 217 (264)
=++.+..+-+.++.++|.++++..=-+-+-.|+.+.
T Consensus 315 ~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~ 350 (1141)
T KOG0018|consen 315 AKKDYRALKETIERLEKELKAVEGAKEEFEKEIEER 350 (1141)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777788888888888877655444444444443
No 207
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=81.39 E-value=18 Score=28.30 Aligned_cols=60 Identities=30% Similarity=0.417 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhh-hhhhhhhHHHHHHHH-------HHHHHHHHHH----HHHHHHHHHHhhhh
Q 024699 158 LIAMRADIDGIRSELVEARRAF-EFEKKANEEQIEQKQ-------AMENNLISMA----REIEKLRAELLNTE 218 (264)
Q Consensus 158 ipal~aEie~lrqElqr~Raa~-EyEKk~~~e~~Eq~q-------aMEknlisma----rEvEKLRaElanae 218 (264)
+.++++|.|.+-+|+.-.+..- +||.|. ..++--++ .||.+-..|. .||-+||.+|.+..
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki-~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r~ 77 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKI-NSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQRG 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4556666666666666655433 344442 22222222 3344444444 35889999998764
No 208
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=81.33 E-value=20 Score=35.79 Aligned_cols=32 Identities=16% Similarity=0.311 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024699 187 EEQIEQKQAMENNLISMAREIEKLRAELLNTE 218 (264)
Q Consensus 187 ~e~~Eq~qaMEknlismarEvEKLRaElanae 218 (264)
.+...+....+.-+-.+.+++++|+.+|.+..
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 141 ERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33334445555555666777777777776553
No 209
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=81.29 E-value=26 Score=28.11 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHH
Q 024699 156 KQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMEN 198 (264)
Q Consensus 156 qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEk 198 (264)
.-+..|...|+...+.+..++..++.-++.-.+-.-..++|||
T Consensus 68 ~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~lek 110 (141)
T TIGR02473 68 RFIRQLDQRIQQQQQELALLQQEVEAKRERLLEARRELKALEK 110 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777777777776666666666666654
No 210
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=81.27 E-value=19 Score=36.73 Aligned_cols=46 Identities=20% Similarity=0.223 Sum_probs=30.2
Q ss_pred HHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhH
Q 024699 48 REMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKE 93 (264)
Q Consensus 48 ~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e 93 (264)
.|+..|..|=.-..+|--.|--++.....+++.|...+.++++|.+
T Consensus 45 ee~kalGiegDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~ 90 (472)
T TIGR03752 45 EELKALGIEGDTPADTLRTLVAEVKELRKRLAKLISENEALKAENE 90 (472)
T ss_pred chhHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666666666677777777777776665
No 211
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=81.20 E-value=7.8 Score=34.35 Aligned_cols=75 Identities=20% Similarity=0.359 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q 024699 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQK 193 (264)
Q Consensus 115 ~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~ 193 (264)
.++..+..+..++.++.....+|..+++..... +.+-..=..+.++++.|+.++..+.+.++--++...+.++++
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~----r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~ 140 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKKG----REESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKL 140 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 344444444554444444444444444443221 122334455677778888888888877775556666666553
No 212
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=81.19 E-value=21 Score=26.94 Aligned_cols=28 Identities=14% Similarity=0.426 Sum_probs=18.1
Q ss_pred HHHHHHhhHHHHHHHhhhhhHhhhhhHH
Q 024699 67 LQRELTASKDEIHRLGQIIPKLRADKEA 94 (264)
Q Consensus 67 LrqeLaaaq~Elqrl~~~~~~l~ae~e~ 94 (264)
.+++|+.+.+++......+..+....+.
T Consensus 3 a~~~l~~~~~~~~~~~~~l~~L~~~~~~ 30 (123)
T PF02050_consen 3 AEQELAEAQQELQEAEEQLEQLQQERQE 30 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777666666655443
No 213
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=81.02 E-value=78 Score=34.24 Aligned_cols=149 Identities=19% Similarity=0.262 Sum_probs=87.5
Q ss_pred hhhHHHHHHHHHHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhH
Q 024699 37 MTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPV 116 (264)
Q Consensus 37 ~~LEe~l~~Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~l 116 (264)
.=||++++.-..||-.=- |-.=-..|.+|.+-|.-.++|+..=..... ....|
T Consensus 432 ~~Le~elekLk~eilKAk--~s~~~~~~~~L~e~IeKLk~E~d~e~S~A~-------------------------~~~gL 484 (762)
T PLN03229 432 RELEGEVEKLKEQILKAK--ESSSKPSELALNEMIEKLKKEIDLEYTEAV-------------------------IAMGL 484 (762)
T ss_pred ccHHHHHHHHHHHHHhcc--cccCCCCChHHHHHHHHHHHHHHHHHHHhh-------------------------hhhhH
Confidence 346777766666664431 222245566666666666665533221111 11234
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 024699 117 RAEVVQLRAEVQKLNS----SRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQ 192 (264)
Q Consensus 117 k~El~q~raE~q~L~~----~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq 192 (264)
+.-|.-++-|+-+-.+ .--.|+.++..|.+|+.+--++.-.-|.|+.-+|.|+.+. ++.+.-+ .+.++.-+
T Consensus 485 k~kL~~Lr~E~sKa~~~~~~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~-~~~~~s~--g~~~a~~L-- 559 (762)
T PLN03229 485 QERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFS-RAKALSE--KKSKAEKL-- 559 (762)
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHH-Hhhhhcc--cchhhhhh--
Confidence 4555555554444211 0113777899999999988888888899999999998887 4443322 22122222
Q ss_pred HHHHHHHHHH------HHHHHHHHHHHHhhh
Q 024699 193 KQAMENNLIS------MAREIEKLRAELLNT 217 (264)
Q Consensus 193 ~qaMEknlis------marEvEKLRaElana 217 (264)
-+..-|.++. |..+||.|.||+.+.
T Consensus 560 k~ei~kki~e~~~~~~~kek~ea~~aev~~~ 590 (762)
T PLN03229 560 KAEINKKFKEVMDRPEIKEKMEALKAEVASS 590 (762)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHHhc
Confidence 3456677777 777788888877763
No 214
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=80.99 E-value=33 Score=32.44 Aligned_cols=93 Identities=15% Similarity=0.204 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Q 024699 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQA 195 (264)
Q Consensus 116 lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qa 195 (264)
++.++.++.+++..+.+..+...++++....++.|.+.=.++--..+.|++..+.++.-..+.+ ..
T Consensus 97 ~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~~~~~~~~~~~~~--------------~~ 162 (370)
T PRK11578 97 AENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLDTAATELAVKQAQI--------------GT 162 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH--------------HH
Confidence 3344444444444444444455555555555555554433333334455555544443333322 23
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccc
Q 024699 196 MENNLISMAREIEKLRAELLNTERRAC 222 (264)
Q Consensus 196 MEknlismarEvEKLRaElanae~ra~ 222 (264)
++..+-.....++.++..+.+..-+|+
T Consensus 163 ~~~~l~~~~~~l~~~~~~l~~~~I~AP 189 (370)
T PRK11578 163 IDAQIKRNQASLDTAKTNLDYTRIVAP 189 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCEEECC
Confidence 333444445556666666766666664
No 215
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=80.93 E-value=41 Score=30.10 Aligned_cols=92 Identities=28% Similarity=0.339 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Q 024699 119 EVVQLRAEVQKLNSSRQE---LTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQA 195 (264)
Q Consensus 119 El~q~raE~q~L~~~RQe---L~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qa 195 (264)
++..+++=+.+|.+.+.+ +......+.+.+....++.+++-.-.++|+.-=-||++..+.+. +...+
T Consensus 87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~----------~~ke~ 156 (190)
T PF05266_consen 87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLK----------EKKEA 156 (190)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH----------HHHHH
Confidence 344455556666666663 33444446666666666666666666666665556665554444 34455
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhc
Q 024699 196 MENNLISMAREIEKLRAELLNTERR 220 (264)
Q Consensus 196 MEknlismarEvEKLRaElanae~r 220 (264)
+.+.+..|..++++|-.++.|++-+
T Consensus 157 ~~~ei~~lks~~~~l~~~~~~~e~~ 181 (190)
T PF05266_consen 157 KDKEISRLKSEAEALKEEIENAELE 181 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888654
No 216
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=80.87 E-value=23 Score=27.13 Aligned_cols=41 Identities=24% Similarity=0.320 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 024699 135 QELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEA 175 (264)
Q Consensus 135 QeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~ 175 (264)
|++..+++.++.++..+.+..+++-.-..+++....||..+
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l 41 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKL 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34444444455554444444444444444444455555443
No 217
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=80.81 E-value=46 Score=30.60 Aligned_cols=30 Identities=17% Similarity=0.037 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 024699 193 KQAMENNLISMAREIEKLRAELLNTERRAC 222 (264)
Q Consensus 193 ~qaMEknlismarEvEKLRaElanae~ra~ 222 (264)
....+.++-+.-..++.....+.++.-+++
T Consensus 181 ~~~~~~~~~~~~~~l~~a~~~l~~~~i~AP 210 (327)
T TIGR02971 181 VDLAQAEVKSALEAVQQAEALLELTYVKAP 210 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCEEECC
Confidence 344555666666677777777777777765
No 218
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=80.79 E-value=43 Score=30.24 Aligned_cols=156 Identities=21% Similarity=0.253 Sum_probs=75.9
Q ss_pred HHHHHHHhhHHHHHHHhhhhhH---hhhhhHHHHHHHHHhhhhhHHhhhhch----hHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 66 HLQRELTASKDEIHRLGQIIPK---LRADKEAHTRELFDRGLKLEVELRASE----PVRAEVVQLRAEVQKLNSSRQELT 138 (264)
Q Consensus 66 aLrqeLaaaq~Elqrl~~~~~~---l~ae~e~q~R~l~ek~~KmEAelra~e----~lk~El~q~raE~q~L~~~RQeL~ 138 (264)
.|+.+|-.+++.+..+...+.. -...-|.++..|-.|+.-||.+|...+ .+..-|..+...+......++.|-
T Consensus 5 ~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE 84 (237)
T PF00261_consen 5 QLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLE 84 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666655544332 233445666677777777777665553 233445555555555444554444
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHH-----------HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHH----
Q 024699 139 TQIKGLTKDVNRLEAENKQLIAMRADI-----------DGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISM---- 203 (264)
Q Consensus 139 ~qvq~l~qeL~r~~ad~qqipal~aEi-----------e~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlism---- 203 (264)
.........+..+...++.+...-.+. ..+.++|.++-.-++-=-....++=+.++.+..||-++
T Consensus 85 ~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~ 164 (237)
T PF00261_consen 85 NREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASE 164 (237)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhh
Confidence 444443333333333333333333333 33444444443333333333444444455555555332
Q ss_pred ----------HHHHHHHHHHHhhhhhcc
Q 024699 204 ----------AREIEKLRAELLNTERRA 221 (264)
Q Consensus 204 ----------arEvEKLRaElanae~ra 221 (264)
-..|..|...|.+++.|+
T Consensus 165 ~~~~~re~~~e~~i~~L~~~lkeaE~Ra 192 (237)
T PF00261_consen 165 EKASEREDEYEEKIRDLEEKLKEAENRA 192 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111555555566666554
No 219
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=80.77 E-value=47 Score=30.64 Aligned_cols=51 Identities=18% Similarity=0.362 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 024699 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSE 171 (264)
Q Consensus 118 ~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqE 171 (264)
.||.|++.|+..|.+.-..+..+-......+.++..+ +--|+.+||.+|.|
T Consensus 53 eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~ee---y~~Lk~~in~~R~e 103 (230)
T PF10146_consen 53 EELRQINQDINTLENIIKQAESERNKRQEKIQRLYEE---YKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 5666777777776666555555555555555555532 23455666666666
No 220
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=80.41 E-value=57 Score=31.41 Aligned_cols=30 Identities=17% Similarity=0.334 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 024699 144 LTKDVNRLEAENKQLIAMRADIDGIRSELV 173 (264)
Q Consensus 144 l~qeL~r~~ad~qqipal~aEie~lrqElq 173 (264)
|..||---+.-+-.+--|+.|--.|||||+
T Consensus 152 LESELdEke~llesvqRLkdEardlrqela 181 (333)
T KOG1853|consen 152 LESELDEKEVLLESVQRLKDEARDLRQELA 181 (333)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444334444444455555566666664
No 221
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=80.02 E-value=46 Score=33.58 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 024699 129 KLNSSRQELTTQIKGLTKDVNRLE----AENKQLIAMRADIDGIRSELVEARRAFE 180 (264)
Q Consensus 129 ~L~~~RQeL~~qvq~l~qeL~r~~----ad~qqipal~aEie~lrqElqr~Raa~E 180 (264)
.+...-..|.+++..+.-+|.-+. .+.-+|+.++++|..|+++|...|+-+-
T Consensus 283 ~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl~ 338 (434)
T PRK15178 283 AIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRLS 338 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444445555555555443 3578899999999999999998887774
No 222
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=80.02 E-value=60 Score=31.43 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=26.6
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhHh--hhhhHHHHHHHHHhhhhhHH
Q 024699 65 THLQRELTASKDEIHRLGQIIPKL--RADKEAHTRELFDRGLKLEV 108 (264)
Q Consensus 65 vaLrqeLaaaq~Elqrl~~~~~~l--~ae~e~q~R~l~ek~~KmEA 108 (264)
-.+.+.|....+++..+...-..+ .++.+..|-+||+..-+++.
T Consensus 264 d~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~ 309 (388)
T PF04912_consen 264 DSIERRLKSLLSELEELAEKRKEAKEDAEQESKIDELYEILPRWDP 309 (388)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHH
Confidence 345566666666666655443333 34556777777777777775
No 223
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=80.00 E-value=51 Score=30.58 Aligned_cols=83 Identities=14% Similarity=0.065 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 140 QIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQ-----IEQKQAMENNLISMAREIEKLRAEL 214 (264)
Q Consensus 140 qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~-----~Eq~qaMEknlismarEvEKLRaEl 214 (264)
++....+++.|.+.=.++--.-+.++|..+.++..+++.++.-+...... .++....+..+-+...++++++..+
T Consensus 122 ~l~~a~~~~~r~~~L~~~g~vs~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~a~~~l 201 (331)
T PRK03598 122 AYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQAQATLKSAQDKLSQYREGNRPQDIAQAKASLAQAQAALAQAELNL 201 (331)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555444444444444566666666666665555443322211 1233444555555555567777777
Q ss_pred hhhhhccc
Q 024699 215 LNTERRAC 222 (264)
Q Consensus 215 anae~ra~ 222 (264)
.+..-+|.
T Consensus 202 ~~~~I~AP 209 (331)
T PRK03598 202 QDTELIAP 209 (331)
T ss_pred hcCEEECC
Confidence 66666664
No 224
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=79.81 E-value=95 Score=33.59 Aligned_cols=67 Identities=22% Similarity=0.298 Sum_probs=35.7
Q ss_pred hhHhhhhhHHHHHHHHHhhh--------hhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024699 85 IPKLRADKEAHTRELFDRGL--------KLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE 154 (264)
Q Consensus 85 ~~~l~ae~e~q~R~l~ek~~--------KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad 154 (264)
+..++-|.|..|.+.+-+.. .||+ -...+...|..+.+|.-.|..+-++-..-|..|+....++.+|
T Consensus 61 lr~~ree~eq~i~~~~~~~s~e~e~~~~~le~---~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~ 135 (769)
T PF05911_consen 61 LRQVREEQEQKIHEAVAKKSKEWEKIKSELEA---KLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAE 135 (769)
T ss_pred HHHhhHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34556666666666554431 2232 1233445666666666666666565555555555554444444
No 225
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=79.71 E-value=12 Score=38.29 Aligned_cols=17 Identities=35% Similarity=0.610 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhhhhhcc
Q 024699 205 REIEKLRAELLNTERRA 221 (264)
Q Consensus 205 rEvEKLRaElanae~ra 221 (264)
+|+|.||.+|.+||++=
T Consensus 309 kelE~lR~~L~kAEkel 325 (575)
T KOG4403|consen 309 KELEQLRVALEKAEKEL 325 (575)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 59999999999999885
No 226
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=79.67 E-value=45 Score=29.81 Aligned_cols=94 Identities=14% Similarity=0.273 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 024699 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQ 194 (264)
Q Consensus 115 ~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~q 194 (264)
..+.++..+..|.++|..--+.+..++..|.++|.....|.+.+-.+++-+..+.++|..++-..+--.-.+........
T Consensus 45 ~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Erd 124 (201)
T PF13851_consen 45 RNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERD 124 (201)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666777777777777777777777777777777777777777777777777777666666666666666666
Q ss_pred HHHHHHHHHHHHHH
Q 024699 195 AMENNLISMAREIE 208 (264)
Q Consensus 195 aMEknlismarEvE 208 (264)
.+...+.++..||.
T Consensus 125 eL~~kf~~~i~evq 138 (201)
T PF13851_consen 125 ELYRKFESAIQEVQ 138 (201)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666666643
No 227
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=79.66 E-value=17 Score=31.36 Aligned_cols=60 Identities=22% Similarity=0.377 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Q 024699 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARR 177 (264)
Q Consensus 118 ~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Ra 177 (264)
.++....+++..+...+..|.+|+....+.|..++..+.-+..|+++|+.|+.++...-.
T Consensus 13 k~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~ 72 (155)
T PF06810_consen 13 KDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKE 72 (155)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 445556677777788888999999999999999999887788888888888888765433
No 228
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=79.45 E-value=42 Score=29.34 Aligned_cols=53 Identities=11% Similarity=0.256 Sum_probs=26.0
Q ss_pred hhhHHHHHHHHHhhhhhHHhhhhc-hhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 024699 90 ADKEAHTRELFDRGLKLEVELRAS-EPVRAEVVQLRAEVQKLNSS-RQELTTQIK 142 (264)
Q Consensus 90 ae~e~q~R~l~ek~~KmEAelra~-e~lk~El~q~raE~q~L~~~-RQeL~~qvq 142 (264)
.++...|.+=++.+.+.-+++... ..+.++|..++.+++.+... |..|.++..
T Consensus 40 e~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~ 94 (155)
T PRK06569 40 NNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFL 94 (155)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433332 34555666666666665554 555554443
No 229
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=79.30 E-value=78 Score=33.81 Aligned_cols=116 Identities=12% Similarity=0.259 Sum_probs=76.5
Q ss_pred HHHHHHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHH
Q 024699 44 EIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQL 123 (264)
Q Consensus 44 ~~Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~ 123 (264)
..=..+|+.|+.+|=....+| +..+|..+- ......++.+.+..+-..++.+..|-. +....+..|.++
T Consensus 190 ~~~~~qi~~l~~~ny~~~~~~--v~~~L~~~~------~~lg~~i~~~l~~~~~~~L~~i~~l~~---~~~~~~~~L~~v 258 (806)
T PF05478_consen 190 NDTPQQIDHLLVQNYSELKDH--VSSDLDNIG------SLLGGDIQDQLGSNVYPALDSILDLAQ---AMQETKELLQNV 258 (806)
T ss_pred HhhHHHHHHHHHHHHHHHHHH--HHHHHHhcc------chhhHHHHHHHhhhhHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 344455666666665444444 223333332 234567777788888888888888776 445566777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------hhhhHHHHHHHHHHHH
Q 024699 124 RAEVQKLNSSRQELTTQIKGLTKDVNRLEAE----------------------NKQLIAMRADIDGIRS 170 (264)
Q Consensus 124 raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad----------------------~qqipal~aEie~lrq 170 (264)
.....+|...-++|..-+..+..+|.....+ ..|+|.+...++++..
T Consensus 259 ~~~~~~L~~~~~qL~~~L~~vK~~L~~~l~~~C~~~~C~~i~~~~~~l~l~~~~~qLP~v~~~l~~l~~ 327 (806)
T PF05478_consen 259 NSSLKDLQEYQSQLRDGLRGVKRDLNNTLQDLCTNRECNSILSSLDILQLDADFSQLPNVTSQLNNLEE 327 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhHHHHHhccccccCCCcccCCChHHHHHHHHH
Confidence 7777777777777777777777766666555 4568888888877774
No 230
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=78.85 E-value=21 Score=33.19 Aligned_cols=36 Identities=28% Similarity=0.386 Sum_probs=29.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024699 182 EKKANEEQIEQKQAMENNLISMAREIEKLRAELLNT 217 (264)
Q Consensus 182 EKk~~~e~~Eq~qaMEknlismarEvEKLRaElana 217 (264)
-|.-|.|+=+++....+.+..+-+||++|+++=.+-
T Consensus 91 FR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kL 126 (248)
T PF08172_consen 91 FRQRNAELEEELRKQQQTISSLRREVESLRADNVKL 126 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888889899999999999999999985544
No 231
>PLN02939 transferase, transferring glycosyl groups
Probab=78.84 E-value=1.1e+02 Score=33.95 Aligned_cols=157 Identities=22% Similarity=0.242 Sum_probs=79.6
Q ss_pred CCchhhHHHHHHHHHHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhh------hHHHHHHHHHhhhhhH
Q 024699 34 FHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRAD------KEAHTRELFDRGLKLE 107 (264)
Q Consensus 34 p~P~~LEe~l~~Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae------~e~q~R~l~ek~~KmE 107 (264)
.+..+||+.++.-..|+-.-..+-.- .-..|-+||...+.|.--|...|..++++ .|-.+..|-....-|+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (977)
T PLN02939 194 IHVEILEEQLEKLRNELLIRGATEGL---CVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLD 270 (977)
T ss_pred ccchhhHHHHHHHhhhhhcccccccc---ccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 35567777776665554322222110 11235556666666665555555555543 3344444444444444
Q ss_pred HhhhhchhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-------HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 024699 108 VELRASEPVRAEVVQLRAEVQKLNSSRQE-LTTQIKGL-------TKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (264)
Q Consensus 108 Aelra~e~lk~El~q~raE~q~L~~~RQe-L~~qvq~l-------~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 179 (264)
+-|+ .|-.-+..++.|+-+|.....| +..+|..| +....++-.-++|--.|+.-+|.|..=|..+- +
T Consensus 271 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 345 (977)
T PLN02939 271 ASLR---ELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEAN--V 345 (977)
T ss_pred HHHH---HHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhh--H
Confidence 4333 2334456677788888777666 45555554 44444444455555666666666655554432 2
Q ss_pred hhhhhhhHHHH-HHHHHHHH
Q 024699 180 EFEKKANEEQI-EQKQAMEN 198 (264)
Q Consensus 180 EyEKk~~~e~~-Eq~qaMEk 198 (264)
.-....+.+++ ++++..|.
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~ 365 (977)
T PLN02939 346 SKFSSYKVELLQQKLKLLEE 365 (977)
T ss_pred hhhhHHHHHHHHHHHHHHHH
Confidence 22233345555 34444443
No 232
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=78.76 E-value=40 Score=28.66 Aligned_cols=57 Identities=19% Similarity=0.306 Sum_probs=32.8
Q ss_pred HHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024699 99 LFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL 158 (264)
Q Consensus 99 l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqi 158 (264)
..++.-.+|+.++ .+.++..+...||..|..--+-|-.+|..+...|..+...+...
T Consensus 12 a~~r~e~~e~~~K---~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~ 68 (143)
T PF12718_consen 12 AQDRAEELEAKVK---QLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEES 68 (143)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4455556666444 33455566666666666666666666666666666555544333
No 233
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=78.66 E-value=54 Score=30.14 Aligned_cols=100 Identities=16% Similarity=0.217 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH----HH
Q 024699 121 VQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQ----AM 196 (264)
Q Consensus 121 ~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~q----aM 196 (264)
.+...++..+.+....+.++++...+++.|.+.=.++--.-+.++|..+.++..+++.++.-+......+.+.+ .+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~iS~~~~d~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 172 (327)
T TIGR02971 93 AKLFKDVAAQQATLNRLEAELETAQREVDRYRSLFRDGAVSASDLDSKALKLRTAEEELEEALASRSEQIDGARAALASL 172 (327)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555666666677777766655555555667777776666666655544332221111111 11
Q ss_pred -----HHHHHHHHHHHHHHHHHHhhhhhc
Q 024699 197 -----ENNLISMAREIEKLRAELLNTERR 220 (264)
Q Consensus 197 -----EknlismarEvEKLRaElanae~r 220 (264)
..++-..-.++..+++.+..+...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~~ 201 (327)
T TIGR02971 173 AEEVRETDVDLAQAEVKSALEAVQQAEAL 201 (327)
T ss_pred hhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123333445677777777777554
No 234
>PRK11519 tyrosine kinase; Provisional
Probab=78.50 E-value=44 Score=35.03 Aligned_cols=24 Identities=4% Similarity=0.152 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 188 EQIEQKQAMENNLISMAREIEKLR 211 (264)
Q Consensus 188 e~~Eq~qaMEknlismarEvEKLR 211 (264)
++.-+.++=++.+..+..-.+.++
T Consensus 374 ~L~Re~~~~~~lY~~lL~r~~e~~ 397 (719)
T PRK11519 374 RLTRDVESGQQVYMQLLNKQQELK 397 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444445555555554444443
No 235
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=78.38 E-value=21 Score=35.24 Aligned_cols=29 Identities=31% Similarity=0.465 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKG 143 (264)
Q Consensus 115 ~lk~El~q~raE~q~L~~~RQeL~~qvq~ 143 (264)
.+-.+..++..+++.|.+.|..++.++..
T Consensus 34 ~ld~~~r~~~~~~~~l~~erN~~sk~i~~ 62 (418)
T TIGR00414 34 ALDDERKKLLSEIEELQAKRNELSKQIGK 62 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555566666666666666544
No 236
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=78.35 E-value=52 Score=37.16 Aligned_cols=139 Identities=22% Similarity=0.319 Sum_probs=73.7
Q ss_pred hHHHHHHHHhhHHHHHHHh-hhhhHhhhhh-------HHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHH
Q 024699 64 NTHLQRELTASKDEIHRLG-QIIPKLRADK-------EAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQ 135 (264)
Q Consensus 64 hvaLrqeLaaaq~Elqrl~-~~~~~l~ae~-------e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQ 135 (264)
--.||..+..++|||--|. ++..-+-++- |.-+-++..++.-+|.. =..++.+..-.+-.|...+|
T Consensus 1065 s~eLReQIq~~KQ~LesLQRAV~TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk~------k~~~l~~ikK~ia~lnnlqq 1138 (1439)
T PF12252_consen 1065 SSELREQIQSVKQDLESLQRAVVTPVVTDAEKVRVRYETLITDITKRITDLEKA------KLDNLDSIKKAIANLNNLQQ 1138 (1439)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhcc------ccccHHHHHHHHHHHHHHHH
Confidence 3457888888888877776 3333333222 23344556667667641 11234444444445555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh-----HHHHHHH--------HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 024699 136 ELTTQIKGLTKDVNRLEAENKQL-----IAMRADI--------DGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLIS 202 (264)
Q Consensus 136 eL~~qvq~l~qeL~r~~ad~qqi-----pal~aEi--------e~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlis 202 (264)
|| .-|..|-.|.+.+...| ..|..-| +.+--|+-+-=++++.||-.| +--++.|.+++-.
T Consensus 1139 El----klLRnEK~Rmh~~~dkVDFSDIEkLE~qLq~~~~kL~dAyl~eitKqIsaLe~e~PKn---ltdvK~missf~d 1211 (1439)
T PF12252_consen 1139 EL----KLLRNEKIRMHSGTDKVDFSDIEKLEKQLQVIHTKLYDAYLVEITKQISALEKEKPKN---LTDVKSMISSFND 1211 (1439)
T ss_pred HH----HHHHhHHHhhccCCCcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhCCCc---hhhHHHHHHHHHh
Confidence 53 33444444444332221 1111111 333334444445555444333 3367889999999
Q ss_pred HHHHHHHHHHHHh
Q 024699 203 MAREIEKLRAELL 215 (264)
Q Consensus 203 marEvEKLRaEla 215 (264)
...|||-||-|--
T Consensus 1212 ~laeiE~LrnErI 1224 (1439)
T PF12252_consen 1212 RLAEIEFLRNERI 1224 (1439)
T ss_pred hhhHHHHHHHHHh
Confidence 9999999988754
No 237
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=78.13 E-value=1.2e+02 Score=33.93 Aligned_cols=166 Identities=17% Similarity=0.239 Sum_probs=89.5
Q ss_pred CCCCchhhHHHHH-----HHHHHhhhhcccccccc---------cchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHH--H
Q 024699 32 MHFHPMTLEEEIE-----IQRREMHRIISENRHAI---------DDNTHLQRELTASKDEIHRLGQIIPKLRADKEA--H 95 (264)
Q Consensus 32 ~pp~P~~LEe~l~-----~Q~~EiqrLl~dNqRLa---------athvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~--q 95 (264)
..|.+.-||+=|. ....=|..=--=||-|- ....-||+||.|+.. -++-.-++.-. +
T Consensus 367 iSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaRe-------KnGvyisee~y~~~ 439 (1041)
T KOG0243|consen 367 ISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAARE-------KNGVYISEERYTQE 439 (1041)
T ss_pred eCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHh-------hCceEechHHHHHH
Confidence 3467777898773 34334544444455543 344445555555532 22222222221 2
Q ss_pred HHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 024699 96 TRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEA 175 (264)
Q Consensus 96 ~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~ 175 (264)
..+.=.++.++|.--.-.++++..+..+......+.-.++.|..+++.+..+|..- -.|+..+..|++.+
T Consensus 440 e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~----------~~el~~~~ee~~~~ 509 (1041)
T KOG0243|consen 440 EKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNK----------NKELESLKEELQQA 509 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 22232333333332224445566666666666555555666666666555555432 26778888999988
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 024699 176 RRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRA 221 (264)
Q Consensus 176 Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElanae~ra 221 (264)
.+.+..+ .+.+.++..-|.+++.- ..+||..+..+-..-
T Consensus 510 ~~~l~~~----e~ii~~~~~se~~l~~~---a~~l~~~~~~s~~d~ 548 (1041)
T KOG0243|consen 510 KATLKEE----EEIISQQEKSEEKLVDR---ATKLRRSLEESQDDL 548 (1041)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 8885432 34455555555555555 667777777665443
No 238
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=78.08 E-value=43 Score=33.23 Aligned_cols=96 Identities=19% Similarity=0.243 Sum_probs=63.6
Q ss_pred hhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHh----hhhhHHhhhhchhHHHHHHHHHH
Q 024699 50 MHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDR----GLKLEVELRASEPVRAEVVQLRA 125 (264)
Q Consensus 50 iqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek----~~KmEAelra~e~lk~El~q~ra 125 (264)
|++|.-.|..|-- ++.-+.--|.|.+.|.....++.++- .++|+++-| ..+||. .+-.++.|-+++..
T Consensus 77 irk~~e~~eglr~----i~es~~e~q~e~~qL~~qnqkL~nqL-~~~~~vf~k~k~~~q~LE~---li~~~~EEn~~lql 148 (401)
T PF06785_consen 77 IRKITEKDEGLRK----IRESVEERQQESEQLQSQNQKLKNQL-FHVREVFMKTKGDIQHLEG---LIRHLREENQCLQL 148 (401)
T ss_pred HHHHHhccHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhcchHHHHHH---HHHHHHHHHHHHHH
Confidence 5566655555432 33455566777888877777777443 455665543 346666 44566778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 126 EVQKLNSSRQELTTQIKGLTKDVNRLEA 153 (264)
Q Consensus 126 E~q~L~~~RQeL~~qvq~l~qeL~r~~a 153 (264)
-++.+...+.|...+.|.|..||+-+.+
T Consensus 149 qL~~l~~e~~Ekeeesq~LnrELaE~la 176 (401)
T PF06785_consen 149 QLDALQQECGEKEEESQTLNRELAEALA 176 (401)
T ss_pred hHHHHHHHHhHhHHHHHHHHHHHHHHHH
Confidence 8888888888888888888777765544
No 239
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=77.94 E-value=40 Score=30.16 Aligned_cols=74 Identities=22% Similarity=0.371 Sum_probs=31.7
Q ss_pred HHHHhhhhhHHhhhhchhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 024699 98 ELFDRGLKLEVELRASEPVRAEVV----QLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELV 173 (264)
Q Consensus 98 ~l~ek~~KmEAelra~e~lk~El~----q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElq 173 (264)
.+.+...++|..+...+..+.++. .+...+-.|....+-+..+.+...+++.++++++ .++..++++++.+.+
T Consensus 107 ~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~---~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 107 KLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEA---EALKEEIENAELEFQ 183 (190)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 445555555555544422222222 2222222333333334444555555555555554 233444444444444
Q ss_pred H
Q 024699 174 E 174 (264)
Q Consensus 174 r 174 (264)
.
T Consensus 184 ~ 184 (190)
T PF05266_consen 184 S 184 (190)
T ss_pred H
Confidence 3
No 240
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=77.91 E-value=39 Score=28.12 Aligned_cols=71 Identities=20% Similarity=0.294 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHH
Q 024699 119 EVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMEN 198 (264)
Q Consensus 119 El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEk 198 (264)
++...-.....|...|.+|.+.++.|.++-. +-+| -+..|+.+|.-+|..+|-||-++.++--+.--++|
T Consensus 24 slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~---s~~q-------r~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~ 93 (107)
T PF09304_consen 24 SLEDEKTSQGELAKQKDQLRNALQSLQAQNA---SRNQ-------RIAELQAKIDEARRNLEDEKQAKLELESRLLKAQK 93 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHhHHHHHHHHHHHHHHHH---HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444555556666666655554422 2233 34445555566677778888777665555444444
Q ss_pred H
Q 024699 199 N 199 (264)
Q Consensus 199 n 199 (264)
+
T Consensus 94 d 94 (107)
T PF09304_consen 94 D 94 (107)
T ss_dssp H
T ss_pred h
Confidence 3
No 241
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=77.90 E-value=45 Score=28.75 Aligned_cols=85 Identities=14% Similarity=0.243 Sum_probs=53.0
Q ss_pred HhhhhhHHhhhhchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 024699 101 DRGLKLEVELRASEPVRAEVVQLRAEV-QKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (264)
Q Consensus 101 ek~~KmEAelra~e~lk~El~q~raE~-q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 179 (264)
+|-.++..++...+..+.+...+..+. ++|..++++-..-+....++-.+...+. +...+.|.+. -+..++..|
T Consensus 49 ~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~--~~~A~~ea~~---~~~~A~~~I 123 (173)
T PRK13453 49 KRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQEQI--IHEANVRANG---MIETAQSEI 123 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH---HHHHHHHHH
Confidence 455556666666677777777766666 4566666666666666666655544444 3334444443 455688888
Q ss_pred hhhhhhhHHHH
Q 024699 180 EFEKKANEEQI 190 (264)
Q Consensus 180 EyEKk~~~e~~ 190 (264)
+.|++.-...+
T Consensus 124 ~~ek~~a~~~l 134 (173)
T PRK13453 124 NSQKERAIADI 134 (173)
T ss_pred HHHHHHHHHHH
Confidence 88887665543
No 242
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=77.63 E-value=13 Score=27.58 Aligned_cols=29 Identities=38% Similarity=0.589 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 120 VVQLRAEVQKLNSSRQELTTQIKGLTKDV 148 (264)
Q Consensus 120 l~q~raE~q~L~~~RQeL~~qvq~l~qeL 148 (264)
+.++-.||+.|..--..|+.+|..+..++
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v 33 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADV 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443333333333333333333
No 243
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=77.47 E-value=36 Score=27.49 Aligned_cols=37 Identities=35% Similarity=0.474 Sum_probs=23.2
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 178 AFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAEL 214 (264)
Q Consensus 178 a~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaEl 214 (264)
|+++-++.-..+-+++..+++++..+..++..+...+
T Consensus 88 A~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l 124 (129)
T cd00584 88 AIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555566666666777666666666666554
No 244
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=77.39 E-value=1.2e+02 Score=33.42 Aligned_cols=16 Identities=31% Similarity=0.360 Sum_probs=6.2
Q ss_pred HHHHHHHhhHHHHHHH
Q 024699 66 HLQRELTASKDEIHRL 81 (264)
Q Consensus 66 aLrqeLaaaq~Elqrl 81 (264)
+|..++.........+
T Consensus 220 ~l~~~~~~l~~~~~~~ 235 (1047)
T PRK10246 220 SLTASLQVLTDEEKQL 235 (1047)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444443333333333
No 245
>PF14182 YgaB: YgaB-like protein
Probab=76.93 E-value=25 Score=27.82 Aligned_cols=52 Identities=27% Similarity=0.528 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhh
Q 024699 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEF 181 (264)
Q Consensus 118 ~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~Ey 181 (264)
++|.-+.+|+.+ -|.+.++|..++-+. .+-.++.||..|+++|.-.+..|+-
T Consensus 14 D~LL~LQsElER-----------CqeIE~eL~~l~~ea-~l~~i~~EI~~mkk~Lk~Iq~~Fe~ 65 (79)
T PF14182_consen 14 DKLLFLQSELER-----------CQEIEKELKELEREA-ELHSIQEEISQMKKELKEIQRVFEK 65 (79)
T ss_pred HHHHHHHHHHHH-----------HHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777787777 444444444444332 3556666666677666666666653
No 246
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=76.50 E-value=1.5e+02 Score=34.16 Aligned_cols=32 Identities=22% Similarity=0.371 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 024699 190 IEQKQAMENNLISMAREIEKLRAELLNTERRA 221 (264)
Q Consensus 190 ~Eq~qaMEknlismarEvEKLRaElanae~ra 221 (264)
+.-++.||-.+.+=-+-++.+-+||+-.++|-
T Consensus 1709 l~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~ 1740 (1758)
T KOG0994|consen 1709 LDRLKDLELEYLRNEQALEDKAAELAGLEKRV 1740 (1758)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHH
Confidence 33344444444444445777777777777665
No 247
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=76.26 E-value=57 Score=30.51 Aligned_cols=23 Identities=17% Similarity=0.042 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhccc
Q 024699 200 LISMAREIEKLRAELLNTERRAC 222 (264)
Q Consensus 200 lismarEvEKLRaElanae~ra~ 222 (264)
+-....+++..+..|.++.-+|+
T Consensus 192 ~~~~~a~l~~a~~~l~~~~I~AP 214 (346)
T PRK10476 192 RAAREAALAIAELHLEDTTVRAP 214 (346)
T ss_pred HHHHHHHHHHHHHHhhcCEEECC
Confidence 33445667777778888888875
No 248
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=76.16 E-value=25 Score=26.02 Aligned_cols=42 Identities=21% Similarity=0.388 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhh
Q 024699 115 PVRAEVVQLRAEVQKLN-SSRQELTTQIKGLTKDVNRLEAENK 156 (264)
Q Consensus 115 ~lk~El~q~raE~q~L~-~~RQeL~~qvq~l~qeL~r~~ad~q 156 (264)
....-|.|...|++.+. +.|..+..+|.....+|.+++.+++
T Consensus 36 ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 36 EAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445666667776665 7778888888888887777776654
No 249
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=76.14 E-value=54 Score=28.78 Aligned_cols=101 Identities=17% Similarity=0.200 Sum_probs=55.0
Q ss_pred HHHHHHhhHHHHHHHhhhhhHhhhhhHH---HHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 67 LQRELTASKDEIHRLGQIIPKLRADKEA---HTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKG 143 (264)
Q Consensus 67 LrqeLaaaq~Elqrl~~~~~~l~ae~e~---q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~ 143 (264)
|+.+|.++..++...-+....-.++-+. .++..-+++..|-. ++.++.. .++..+..++..|..++..
T Consensus 20 L~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~---gg~~f~i------~~~~~~~~~r~~l~~~~~~ 90 (158)
T PF09486_consen 20 LRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMT---GGAPFSI------DEYLALRRYRDVLEERVRA 90 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHc---CCCCccH------HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444442 33334444444443 5666642 3455667788888888888
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 024699 144 LTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (264)
Q Consensus 144 l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 179 (264)
+.+++.+++..+ -....+|-.++..|-+.++.|
T Consensus 91 ~e~~~a~l~~~l---~~~~~~ia~~~raIarn~a~i 123 (158)
T PF09486_consen 91 AEAELAALRQAL---RAAEDEIAATRRAIARNDARI 123 (158)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhhH
Confidence 888887776554 233445555555555555444
No 250
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=76.08 E-value=48 Score=32.52 Aligned_cols=144 Identities=15% Similarity=0.185 Sum_probs=71.5
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhHhh---hhhH---HH-HHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 024699 65 THLQRELTASKDEIHRLGQIIPKLR---ADKE---AH-TRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQEL 137 (264)
Q Consensus 65 vaLrqeLaaaq~Elqrl~~~~~~l~---ae~e---~q-~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL 137 (264)
...+...+.+..-+..+........ +..+ .. |..|-.+..-+.. ...-+..++...|..+..+.+...++
T Consensus 249 ~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~s~~i~~Lr~~~~~~~~---~~~~l~~~~~~~~p~~~~~~~q~~~~ 325 (458)
T COG3206 249 QSARARLAQAEARLASLLQLLPLGREAAALREVLESPTIQDLRQQYAQVRQ---QIADLSTELGAKHPQLVALEAQLAEL 325 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccchhhhHHhccHHHHHHHHHHHHHHH---HHHHHHHhhcccChHHHhHHHHHHHH
Confidence 3444555555555555554444333 1111 11 3333333333332 22234455555566555555555555
Q ss_pred HHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHhhhhhhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 138 TTQIKGLTKDVNRLEAEN-KQLIAMRADIDGIRSELVEARRAFEFEKKA---NEEQIEQKQAMENNLISMAREIEKLRAE 213 (264)
Q Consensus 138 ~~qvq~l~qeL~r~~ad~-qqipal~aEie~lrqElqr~Raa~EyEKk~---~~e~~Eq~qaMEknlismarEvEKLRaE 213 (264)
..+++. ++.+..+.. -.+..+...+..|.+++..+++....-.+. ..++.-+.++-...+-++-.=.+.+...
T Consensus 326 ~~~~~~---e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~~~~~~~l~~L~Re~~~~r~~ye~lL~r~qe~~~~ 402 (458)
T COG3206 326 RQQIAA---ELRQILASLPNELALLEQQEAALEKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRYQELSIQ 402 (458)
T ss_pred HHHHHH---HHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555444 333322211 125566666666777766666665544443 4445556666666666666555555544
Q ss_pred H
Q 024699 214 L 214 (264)
Q Consensus 214 l 214 (264)
.
T Consensus 403 ~ 403 (458)
T COG3206 403 E 403 (458)
T ss_pred h
Confidence 4
No 251
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=75.88 E-value=23 Score=34.95 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=17.3
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 112 ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKG 143 (264)
Q Consensus 112 a~e~lk~El~q~raE~q~L~~~RQeL~~qvq~ 143 (264)
..-.+-.+..++..+++.|.+.|.+++.++..
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~ 60 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQ 60 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555566666666666655544
No 252
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=75.73 E-value=99 Score=31.60 Aligned_cols=22 Identities=23% Similarity=0.285 Sum_probs=9.4
Q ss_pred HHHHHHHHhhhhhhhhhhhHHH
Q 024699 168 IRSELVEARRAFEFEKKANEEQ 189 (264)
Q Consensus 168 lrqElqr~Raa~EyEKk~~~e~ 189 (264)
+++|.-..=..++.|-+.+++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~a~~ 182 (514)
T TIGR03319 161 ARHEAAKLIKEIEEEAKEEADK 182 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 253
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=75.39 E-value=67 Score=29.51 Aligned_cols=44 Identities=23% Similarity=0.265 Sum_probs=26.5
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhHhhhhh---HHHHHHHHHhhhhhHH
Q 024699 65 THLQRELTASKDEIHRLGQIIPKLRADK---EAHTRELFDRGLKLEV 108 (264)
Q Consensus 65 vaLrqeLaaaq~Elqrl~~~~~~l~ae~---e~q~R~l~ek~~KmEA 108 (264)
..|.|.|-.++.+|..+...+..+.+.. +.++..+...+.|+|.
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~ 73 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEE 73 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777766666665555433 4555555555666554
No 254
>PF06721 DUF1204: Protein of unknown function (DUF1204); InterPro: IPR009596 This family represents the C terminus of a number of Arabidopsis thaliana hypothetical proteins of unknown function. Family members contain a conserved DFD motif.
Probab=75.24 E-value=69 Score=29.55 Aligned_cols=72 Identities=17% Similarity=0.279 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHHHhh-hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 137 LTTQIKGLTKDVNRLEAENKQLIAMRADI-DGIRSELVEARR-AFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAEL 214 (264)
Q Consensus 137 L~~qvq~l~qeL~r~~ad~qqipal~aEi-e~lrqElqr~Ra-a~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaEl 214 (264)
|..+-..+-+|+.|.+-|++..-.--.|| +-++.|-.|+|+ -++|-. +.- ..++++...++-.+|..++++|
T Consensus 27 la~~~~~~~~~~~r~~~d~~~~~~K~deLedr~~se~KRLRsrR~~~AE-----n~r-rs~L~kv~~l~QARidRvK~Hi 100 (228)
T PF06721_consen 27 LAYQRTVMGQERDRCQDDAEKMNVKFDELEDRISSEQKRLRSRRINYAE-----NNR-RSALEKVASLYQARIDRVKAHI 100 (228)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 33344445556666666666555555555 445666666665 333322 222 4445555555556666666666
No 255
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=75.21 E-value=15 Score=31.08 Aligned_cols=35 Identities=26% Similarity=0.332 Sum_probs=21.8
Q ss_pred cccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhh
Q 024699 58 RHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADK 92 (264)
Q Consensus 58 qRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~ 92 (264)
..|...+.+|.+.|++..+=|.-|...+.++.+..
T Consensus 23 e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~l 57 (160)
T PF13094_consen 23 EQLLDRKRALERQLAANLHQLELLQEEIEKEEAAL 57 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677777777776666666666555554433
No 256
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=74.94 E-value=67 Score=29.27 Aligned_cols=84 Identities=25% Similarity=0.335 Sum_probs=43.3
Q ss_pred HHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 68 QRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRAS----EPVRAEVVQLRAEVQKLNSSRQELTTQIKG 143 (264)
Q Consensus 68 rqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~----e~lk~El~q~raE~q~L~~~RQeL~~qvq~ 143 (264)
+|-..-+.-||++..-...+...|+-+...+ ++...|.+||.-. ..+-..-.+++.|++.|...|++..+++..
T Consensus 95 ~Qt~~LA~~eirR~~LeAQka~~eR~ia~~~--~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~ 172 (192)
T PF11180_consen 95 QQTARLADVEIRRAQLEAQKAQLERLIAESE--ARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQ 172 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677777765555555554433322 3444444444433 122233345556666666666666665555
Q ss_pred HHHHHHHHHH
Q 024699 144 LTKDVNRLEA 153 (264)
Q Consensus 144 l~qeL~r~~a 153 (264)
|...+..++.
T Consensus 173 lQ~qv~~Lq~ 182 (192)
T PF11180_consen 173 LQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 257
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=74.91 E-value=1e+02 Score=31.34 Aligned_cols=28 Identities=4% Similarity=-0.044 Sum_probs=18.0
Q ss_pred hHHHHHHHHhhHHHHHHHhhhhhHhhhh
Q 024699 64 NTHLQRELTASKDEIHRLGQIIPKLRAD 91 (264)
Q Consensus 64 hvaLrqeLaaaq~Elqrl~~~~~~l~ae 91 (264)
+..|++++..+.++++.+...+..++.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~L~~l~~~ 183 (563)
T TIGR00634 156 ANEKVKAYRELYQAWLKARQQLKDRQQK 183 (563)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3457777777777777776666666443
No 258
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=74.55 E-value=85 Score=32.55 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024699 191 EQKQAMENNLISMAREIEKLRAELLNTE 218 (264)
Q Consensus 191 Eq~qaMEknlismarEvEKLRaElanae 218 (264)
+|+.+|---|++|.-.+.|-+.||.+-.
T Consensus 487 ~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 487 EQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5889999999999999888888887643
No 259
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=74.41 E-value=53 Score=37.12 Aligned_cols=41 Identities=15% Similarity=0.289 Sum_probs=30.8
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024699 176 RRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNT 217 (264)
Q Consensus 176 Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElana 217 (264)
..+|+.++|.-..++++.-.++|.|.+= .-.+|+|++|.+-
T Consensus 1270 ~~tf~~q~~eiq~n~~ll~~L~~tlD~S-~~a~Kqk~di~kl 1310 (1439)
T PF12252_consen 1270 VKTFEEQEKEIQQNLQLLDKLEKTLDDS-DTAQKQKEDIVKL 1310 (1439)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHH
Confidence 4678889998889999999999888752 2256777776543
No 260
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=74.27 E-value=74 Score=34.56 Aligned_cols=152 Identities=21% Similarity=0.273 Sum_probs=78.6
Q ss_pred chHHHHHHHHhhHHH---HHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 63 DNTHLQRELTASKDE---IHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTT 139 (264)
Q Consensus 63 thvaLrqeLaaaq~E---lqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~ 139 (264)
-.+++.+-+..++.| ++.++.-...--+++|..+|-+-+|..-+-- ..+-.-.+|.|.+. +.+|-.+--+|..
T Consensus 71 ritt~e~rflnaqre~t~~~d~ndklE~~Lankda~lrq~eekn~slqe---rLelaE~~l~qs~r-ae~lpeveael~q 146 (916)
T KOG0249|consen 71 RITTLEKRFLNAQRESTSIHDLNDKLENELANKDADLRQNEEKNRSLQE---RLELAEPKLQQSLR-AETLPEVEAELAQ 146 (916)
T ss_pred ccchHHHHHHhccCCCCCcccchHHHHHHHhCcchhhchhHHhhhhhhH---HHHHhhHhhHhHHh-hhhhhhhHHHHHH
Confidence 345556666666554 3333333333334455666666666555443 23344455666555 5555555555555
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhH-------------------------HHHHHHH
Q 024699 140 QIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANE-------------------------EQIEQKQ 194 (264)
Q Consensus 140 qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~-------------------------e~~Eq~q 194 (264)
.+..+++-=.+.-.--..+--|..+++.+-+||+++|--.+.+...+. -+.++..
T Consensus 147 r~~al~~aee~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~ 226 (916)
T KOG0249|consen 147 RNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELE 226 (916)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554444332222222233444666777777777777766555433221 1222233
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHhhhh
Q 024699 195 AMENNLISMA-------REIEKLRAELLNTE 218 (264)
Q Consensus 195 aMEknlisma-------rEvEKLRaElanae 218 (264)
...|+|..|- .++|+||.|+.-.+
T Consensus 227 s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 227 SVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3344455444 45888888887665
No 261
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=74.07 E-value=1e+02 Score=31.02 Aligned_cols=120 Identities=18% Similarity=0.253 Sum_probs=50.1
Q ss_pred HHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhh-------hchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 68 QRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELR-------ASEPVRAEVVQLRAEVQKLNSSRQELTTQ 140 (264)
Q Consensus 68 rqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelr-------a~e~lk~El~q~raE~q~L~~~RQeL~~q 140 (264)
..|+...+.||..|.+.....+.+-..-|-.+..++.++=. .- ..--|-..-..+..+.+.|..-=.+|..-
T Consensus 150 ~~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~-~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~ 228 (424)
T PF03915_consen 150 LKEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKS-ASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDL 228 (424)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777777777666667666655432 10 11223333344455566666666666666
Q ss_pred HHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHH
Q 024699 141 IKGLTKDVNR--LEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEE 188 (264)
Q Consensus 141 vq~l~qeL~r--~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e 188 (264)
|+.|.+|+.. .+-..+|+-.+..||+.+..+|...-..|.-||-.--.
T Consensus 229 VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkK 278 (424)
T PF03915_consen 229 VEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKK 278 (424)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 6667777653 44567889999999999999999999998888875433
No 262
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=74.01 E-value=87 Score=31.87 Aligned_cols=46 Identities=24% Similarity=0.441 Sum_probs=22.2
Q ss_pred HHHHHHHH-hhhhhccccCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC
Q 024699 207 IEKLRAEL-LNTERRACGLGGSAYGLLNGCPDMRYPGGAFD-NGYGGAWG 254 (264)
Q Consensus 207 vEKLRaEl-anae~ra~~~~g~~Yg~~yg~p~~~~~~~~Y~-~~Yg~~wg 254 (264)
.+|||++. .|+---- |..|.+|.-.|==-+.||..|.+ +..+++||
T Consensus 262 ldkL~ktNv~n~~F~I--~~~G~fgtIN~FRLG~lp~~pVew~EINAA~G 309 (447)
T KOG2751|consen 262 LDKLRKTNVFNATFHI--WHDGEFGTINNFRLGRLPSVPVEWDEINAAWG 309 (447)
T ss_pred HHHHHhhhhhhheeeE--eecccccccccceeccccCCCcCHHHHHHHhh
Confidence 67888763 2332222 44566666544333344433333 33336665
No 263
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=73.89 E-value=1.1e+02 Score=31.12 Aligned_cols=120 Identities=22% Similarity=0.286 Sum_probs=84.1
Q ss_pred HHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHh-hhh-chhHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 024699 67 LQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVE-LRA-SEPVRAEVVQL----RAEVQKLNSSRQELTTQ 140 (264)
Q Consensus 67 LrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAe-lra-~e~lk~El~q~----raE~q~L~~~RQeL~~q 140 (264)
..+||...++||-.|.++.....++-..-|-.+.+|+.++-.= +-+ ..+=|+=+..- -.+.++|.+-=.+|..-
T Consensus 153 ~~~el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~ 232 (426)
T smart00806 153 QRAELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDI 232 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3488889999999999999999988888888888888877431 111 12222323222 24445555555555555
Q ss_pred HHHHHHHHHH--HHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 024699 141 IKGLTKDVNR--LEAENKQLIAMRADIDGIRSELVEARRAFEFEKKAN 186 (264)
Q Consensus 141 vq~l~qeL~r--~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~ 186 (264)
|..|.+|+.. ++.--+|+-.+..||+...+||+..-.-|.-||-.-
T Consensus 233 vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~W 280 (426)
T smart00806 233 IEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIW 280 (426)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHH
Confidence 5566666553 334568999999999999999999999999988643
No 264
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=73.55 E-value=29 Score=26.56 Aligned_cols=60 Identities=22% Similarity=0.355 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 024699 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (264)
Q Consensus 118 ~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~E 180 (264)
.|+..+..+|++|.+.=-++..+++.|..| +-.+-++||.+-+..-....++..+|+.+.
T Consensus 2 ~d~~eLk~evkKL~~~A~~~kmdLHDLaEd---LP~~w~~i~~vA~~ty~a~~~l~~ak~~L~ 61 (66)
T PF05082_consen 2 SDIEELKKEVKKLNRKATQAKMDLHDLAED---LPTNWEEIPEVAQKTYDAYAELDEAKAELK 61 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---TTTTGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777888889999999999999999998 568888888888877777777777776553
No 265
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=73.47 E-value=42 Score=26.25 Aligned_cols=43 Identities=14% Similarity=0.321 Sum_probs=33.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024699 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN 155 (264)
Q Consensus 113 ~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~ 155 (264)
.++||+|...+-.|+..+.+.+.++-.++..-.+|++.++--+
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v 48 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKV 48 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888888888888888888888888887777777666555
No 266
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=73.40 E-value=3.4 Score=45.42 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 024699 185 ANEEQIEQKQAMENNLISMAREIE 208 (264)
Q Consensus 185 ~~~e~~Eq~qaMEknlismarEvE 208 (264)
.+....-|+------|+.|.|+|-
T Consensus 1114 knPaiIsqLdpvnarllnmiRdIs 1137 (1282)
T KOG0921|consen 1114 KNPAIISQLDPVNARLLNMIRDIS 1137 (1282)
T ss_pred cChhHhhccCchhHHHHHHHHHhc
Confidence 455555565555556777777754
No 267
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=73.28 E-value=1.1e+02 Score=31.06 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 191 EQKQAMENNLISMAREIEKLRAEL 214 (264)
Q Consensus 191 Eq~qaMEknlismarEvEKLRaEl 214 (264)
++....++++...|.++-+.|...
T Consensus 353 ~el~~l~~~l~~~a~~Ls~~R~~~ 376 (563)
T TIGR00634 353 EEVDKLEEELDKAAVALSLIRRKA 376 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455554444443
No 268
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=72.97 E-value=1.1e+02 Score=30.97 Aligned_cols=106 Identities=21% Similarity=0.319 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhh-----hhhHHHHHHH-HHHHHHHHHHhhhhhhhhhh
Q 024699 116 VRAEVVQLRAEVQKLNSSRQELTTQIKG----LTKDVNRLEAEN-----KQLIAMRADI-DGIRSELVEARRAFEFEKKA 185 (264)
Q Consensus 116 lk~El~q~raE~q~L~~~RQeL~~qvq~----l~qeL~r~~ad~-----qqipal~aEi-e~lrqElqr~Raa~EyEKk~ 185 (264)
+...+.+.+..++-|....+.|+.+.+. +..+..+...|+ +++-.+..++ +++++ .+..-|.-+-+.
T Consensus 82 l~~~~~~~~eq~~~l~~~~~ql~~~~~~~~~~i~e~~~~~~~el~~~~~~~Ll~~~~~~~e~f~e---~l~~~~~~s~~~ 158 (448)
T COG1322 82 LQQQLLQSREQLQLLIESLAQLSSEFQELANEIFEELNRRLAELNQQNLKQLLKPLREVLEKFRE---QLEQRIHESAEE 158 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 3344444444445555555555544444 444444444443 3444444444 44443 234456667778
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCC
Q 024699 186 NEEQIEQKQAMENNLISMAREIEKLRAELLNTERRACGLG 225 (264)
Q Consensus 186 ~~e~~Eq~qaMEknlismarEvEKLRaElanae~ra~~~~ 225 (264)
...++++...+-.++-+|++|+-.|-+=|.+.-.|+. ||
T Consensus 159 ~~~~~~~i~~~lg~~~~la~e~~~Lt~~Lk~~ktrG~-wG 197 (448)
T COG1322 159 RSTLLEEIDRLLGEIQQLAQEAGNLTAALKGNKTRGN-WG 197 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc-HH
Confidence 8999999999999999999999999999999554542 65
No 269
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=72.84 E-value=12 Score=30.26 Aligned_cols=47 Identities=19% Similarity=0.368 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Q 024699 136 ELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFE 182 (264)
Q Consensus 136 eL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyE 182 (264)
.+.++++.+.+++...+.-+++++.++++++.+++++......+=.+
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~lP~~ 49 (144)
T PF04350_consen 3 TLQAQIQQLQQELAQLKEKVANLEELKKQLEQLEQQLEELLKKLPAE 49 (144)
T ss_dssp ---------HHHHHHTGGG-SSHHHHHHHHHHHHHHHHHHHHCTTGG
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 45677888899999999999999999999999999998888877654
No 270
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=72.77 E-value=38 Score=25.83 Aligned_cols=58 Identities=14% Similarity=0.231 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 024699 156 KQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERR 220 (264)
Q Consensus 156 qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElanae~r 220 (264)
.+|..|+.|-+.|..--...+..|.--+..+.++- +.+..+...++++-.++.+.+.|
T Consensus 12 e~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e-------~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELE-------KQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777765555444443 33444444444444444444433
No 271
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=72.74 E-value=1.7e+02 Score=33.01 Aligned_cols=20 Identities=35% Similarity=0.561 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 024699 198 NNLISMAREIEKLRAELLNT 217 (264)
Q Consensus 198 knlismarEvEKLRaElana 217 (264)
+.|.++-++-|||+-++.|-
T Consensus 585 daL~alrrhke~LE~e~mnQ 604 (1195)
T KOG4643|consen 585 DALNALRRHKEKLEEEIMNQ 604 (1195)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 45668888889999888665
No 272
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.70 E-value=1.4e+02 Score=32.87 Aligned_cols=98 Identities=20% Similarity=0.296 Sum_probs=57.9
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--------------HHHHhhhhhHHH-------HHHHHH
Q 024699 112 ASEPVRAEVVQLRAEVQKLNSSRQELTTQIK---GLTKDVN--------------RLEAENKQLIAM-------RADIDG 167 (264)
Q Consensus 112 a~e~lk~El~q~raE~q~L~~~RQeL~~qvq---~l~qeL~--------------r~~ad~qqipal-------~aEie~ 167 (264)
+....-.|+..++.|.++|.+--.-|+.++. .+.+-+. -+..|-+|+..+ ..-+..
T Consensus 731 ~~~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~l~~ 810 (970)
T KOG0946|consen 731 ASKTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTRLQE 810 (970)
T ss_pred hccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhHHHH
Confidence 4556667888889999888876666665551 1111111 111223333333 222344
Q ss_pred HHHHHHHHhhhhh---hhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 168 IRSELVEARRAFE---FEKKANEEQIEQKQAMENNLISMAREIEK 209 (264)
Q Consensus 168 lrqElqr~Raa~E---yEKk~~~e~~Eq~qaMEknlismarEvEK 209 (264)
+..|+++.-.++. .+.++.+++++-+..-++|+..=+.-|++
T Consensus 811 ~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq 855 (970)
T KOG0946|consen 811 LQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQ 855 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHH
Confidence 4445554443332 45678899999999888888777777776
No 273
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=72.37 E-value=40 Score=32.83 Aligned_cols=118 Identities=18% Similarity=0.216 Sum_probs=81.7
Q ss_pred HHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhh-------------hHHHHHHHHHhhhhhHHhhhhch
Q 024699 48 REMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRAD-------------KEAHTRELFDRGLKLEVELRASE 114 (264)
Q Consensus 48 ~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae-------------~e~q~R~l~ek~~KmEAelra~e 114 (264)
..|..---+|+.|.++..+|++.++..+.+..-+..+++..+.| .|+|.|- |..-+++ ++|
T Consensus 90 a~i~etkeeNlkLrTd~eaL~dq~adLhgD~elfReTeAq~ese~~a~aseNaarneeelqwrr--deanfic----~~E 163 (389)
T KOG4687|consen 90 ADIEETKEENLKLRTDREALLDQKADLHGDCELFRETEAQFESEKMAGASENAARNEEELQWRR--DEANFIC----AHE 163 (389)
T ss_pred HHHHHHHHHhHhhhHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcccccccccchHHHHhhH--HHHHHHH----HHH
Confidence 44555667899999999999999999999999888888766544 4455542 4444544 577
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhHHHHHHHHHHHHHH
Q 024699 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENK-------QLIAMRADIDGIRSEL 172 (264)
Q Consensus 115 ~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~q-------qipal~aEie~lrqEl 172 (264)
-||+--.++-.|++.+.-...||-.+-..|.-..+|+.-++- .-| .-.+||++--|-
T Consensus 164 gLkak~a~LafDLkamideKEELimERDa~kcKa~RLnhELfvaLnadkrhp-r~~DiDgll~EN 227 (389)
T KOG4687|consen 164 GLKAKCAGLAFDLKAMIDEKEELIMERDAMKCKAARLNHELFVALNADKRHP-RAEDIDGLLAEN 227 (389)
T ss_pred HHHHHhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHhhhHHHHHHcCCCCCc-hhhhhHHHHHhh
Confidence 788887788888877777777777766666666666665542 111 124577776663
No 274
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=72.35 E-value=70 Score=28.36 Aligned_cols=49 Identities=22% Similarity=0.376 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHHHhhhhh
Q 024699 132 SSRQELTTQIKGLTKDVNRLEAENKQLIAMR-ADIDGIRSELVEARRAFE 180 (264)
Q Consensus 132 ~~RQeL~~qvq~l~qeL~r~~ad~qqipal~-aEie~lrqElqr~Raa~E 180 (264)
..|.++..+++.|.+++..+++++++.-..- ..|+.+++++..++.++.
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~an 152 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAAN 152 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 3566666777777777777776665332221 345677777777776654
No 275
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=72.31 E-value=1.9 Score=38.14 Aligned_cols=31 Identities=29% Similarity=0.375 Sum_probs=13.9
Q ss_pred hhhHHHHHHHHHHhhhhcccccccccchHHHHHHH
Q 024699 37 MTLEEEIEIQRREMHRIISENRHAIDDNTHLQREL 71 (264)
Q Consensus 37 ~~LEe~l~~Q~~EiqrLl~dNqRLaathvaLrqeL 71 (264)
++||.+| .|-..|...+|||-+.---|||||
T Consensus 17 alLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 17 ALLESEL----DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHH----HHHHHHHHCH--------------
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788877 677889999999888877777777
No 276
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=72.11 E-value=21 Score=25.86 Aligned_cols=41 Identities=24% Similarity=0.481 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024699 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE 154 (264)
Q Consensus 114 e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad 154 (264)
.-=+..+.++...+..|...-..|..++..|.+++..+.++
T Consensus 22 ~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 22 QRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33445555555555555555555555555555555544443
No 277
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=72.08 E-value=60 Score=27.48 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=33.1
Q ss_pred HHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHH
Q 024699 77 EIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEV 127 (264)
Q Consensus 77 Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~ 127 (264)
.++.+....+.|+.| +-..+.-..|||..|.....++.||..+..|.
T Consensus 6 kmee~~~kyq~LQk~----l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~ 52 (120)
T KOG3478|consen 6 KMEEEANKYQNLQKE----LEKYVESRQKLETQLQENKIVLEELDLLEEDS 52 (120)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhHHHHHHHHHhcccc
Confidence 344444444555543 33456667899999999999999999988774
No 278
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=71.83 E-value=72 Score=28.26 Aligned_cols=89 Identities=26% Similarity=0.402 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q 024699 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQK 193 (264)
Q Consensus 114 e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~ 193 (264)
+-+-+-|--+.-+-++|+..|++|.+-+.-+++++.- ++.=||..-.||..++..|.-=.+-+-+-+++.
T Consensus 52 ekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~----------vRkkID~vNreLkpl~~~cqKKEkEykealea~ 121 (159)
T PF04949_consen 52 EKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEM----------VRKKIDSVNRELKPLGQSCQKKEKEYKEALEAF 121 (159)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHH----------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677788889999999999888889998764 445556666666666665544333333333332
Q ss_pred H-------HHHHHHHHHHHHHHHHHH
Q 024699 194 Q-------AMENNLISMAREIEKLRA 212 (264)
Q Consensus 194 q-------aMEknlismarEvEKLRa 212 (264)
- .+-..|+.+..|-|+||-
T Consensus 122 nEknkeK~~Lv~~L~eLv~eSE~~rm 147 (159)
T PF04949_consen 122 NEKNKEKAQLVTRLMELVSESERLRM 147 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 222346677788777773
No 279
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=71.83 E-value=51 Score=26.53 Aligned_cols=37 Identities=30% Similarity=0.363 Sum_probs=21.5
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 178 AFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAEL 214 (264)
Q Consensus 178 a~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaEl 214 (264)
|+++-++.-..+.++...+++++.....++..+.+.+
T Consensus 87 A~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l 123 (126)
T TIGR00293 87 AIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEA 123 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555666666666666666666665554
No 280
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=71.60 E-value=53 Score=29.12 Aligned_cols=71 Identities=11% Similarity=0.165 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 142 KGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRA 212 (264)
Q Consensus 142 q~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRa 212 (264)
+..-.=|+.+....-+...+..|.+.|+.|+..+..-++.-.+.+.++....++++.++=+|..=+++-|-
T Consensus 83 ~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARk 153 (161)
T TIGR02894 83 QDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRARK 153 (161)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555555566677778888888888888888888888888888888999888888777766553
No 281
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=71.58 E-value=1.8e+02 Score=32.71 Aligned_cols=153 Identities=19% Similarity=0.250 Sum_probs=74.0
Q ss_pred HHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 67 LQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTK 146 (264)
Q Consensus 67 LrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~q 146 (264)
+-+..+..|.||++-......++.-+|...+++-|-.--||.--=--|-.-.-..-++.|+..|..--.||+.++..|..
T Consensus 274 im~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKa 353 (1243)
T KOG0971|consen 274 IMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKA 353 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666666677777777777777766666410000111111223344555555555666666666665
Q ss_pred HHHHHHHhhh-----hhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024699 147 DVNRLEAENK-----QLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTER 219 (264)
Q Consensus 147 eL~r~~ad~q-----qipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElanae~ 219 (264)
|.+--=+|.+ |+--|...-+.|+.=|.|+|..--.||--......-+...-.-+--+-+--|+|..++.++|.
T Consensus 354 EmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs 431 (1243)
T KOG0971|consen 354 EMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAES 431 (1243)
T ss_pred HHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5544333332 111222233455566666666555555444433322222222222233334555555555553
No 282
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=71.58 E-value=1.8e+02 Score=32.80 Aligned_cols=86 Identities=16% Similarity=0.323 Sum_probs=42.8
Q ss_pred HHHHHHHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHh---hhhhHHhhhhchhHHHH
Q 024699 43 IEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDR---GLKLEVELRASEPVRAE 119 (264)
Q Consensus 43 l~~Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek---~~KmEAelra~e~lk~E 119 (264)
-..++.|+|.=|..=++-.. ..-|++...-.++|.+.....++..+.+.-.+++.-. ...++. +.++...+
T Consensus 676 ~~~~~~~l~~~L~~~r~~i~---~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~---s~~~k~~~ 749 (1200)
T KOG0964|consen 676 SRSELKELQESLDEVRNEIE---DIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQE---SLEPKGKE 749 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHH---HhhHHHHH
Confidence 34566666665544222111 1235556666666666667777776666544444322 222222 44455555
Q ss_pred HHHHHHHHHHHHHHH
Q 024699 120 VVQLRAEVQKLNSSR 134 (264)
Q Consensus 120 l~q~raE~q~L~~~R 134 (264)
|.-+...+..|.+.+
T Consensus 750 Le~i~~~l~~~~~~~ 764 (1200)
T KOG0964|consen 750 LEEIKTSLHKLESQS 764 (1200)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555544444433
No 283
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=71.57 E-value=84 Score=33.54 Aligned_cols=73 Identities=16% Similarity=0.221 Sum_probs=41.5
Q ss_pred hhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 73 ASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRAS-EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRL 151 (264)
Q Consensus 73 aaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~-e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~ 151 (264)
..++=++-|..++.-++.+ ++ ++..+.-.++..+ ..++.+..+-..+++.|...++.|+...+.|...+.++
T Consensus 533 ~~~E~l~lL~~a~~vlree---Yi----~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a 605 (717)
T PF10168_consen 533 SPQECLELLSQATKVLREE---YI----EKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEA 605 (717)
T ss_pred CCHHHHHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666632 11 2222222333222 45667777777777777777777776666666655544
Q ss_pred H
Q 024699 152 E 152 (264)
Q Consensus 152 ~ 152 (264)
.
T Consensus 606 ~ 606 (717)
T PF10168_consen 606 K 606 (717)
T ss_pred H
Confidence 3
No 284
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=71.49 E-value=66 Score=33.09 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024699 192 QKQAMENNLISMAREIEKLRA 212 (264)
Q Consensus 192 q~qaMEknlismarEvEKLRa 212 (264)
+.|.-||-|....-.+|||+-
T Consensus 355 krqnaekql~~Ake~~eklkK 375 (575)
T KOG4403|consen 355 KRQNAEKQLKEAKEMAEKLKK 375 (575)
T ss_pred HhhhHHHHHHHHHHHHHHHHH
Confidence 566777777766666888875
No 285
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=71.41 E-value=83 Score=28.83 Aligned_cols=40 Identities=20% Similarity=0.246 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 024699 164 DIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMARE 206 (264)
Q Consensus 164 Eie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarE 206 (264)
+.....+.+...|..|+ ..-....++.|.||.+=|..-++
T Consensus 165 ~y~~~~~ky~~~~~~~~---~~m~~~~~~~Q~~Ee~Ri~~lk~ 204 (261)
T cd07674 165 SLRGSVEKYNRARGDFE---QKMLESAQKFQDIEETHLRHMKL 204 (261)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555543 34456678899999887777776
No 286
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=71.27 E-value=1.1e+02 Score=32.91 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=7.6
Q ss_pred hHHHHHHHHHHHHHHH
Q 024699 158 LIAMRADIDGIRSELV 173 (264)
Q Consensus 158 ipal~aEie~lrqElq 173 (264)
+-..+.|++.+-.|+.
T Consensus 574 ~~~a~~~~~~~i~~lk 589 (771)
T TIGR01069 574 LKALKKEVESIIRELK 589 (771)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344455555555544
No 287
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=70.99 E-value=5 Score=43.47 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 189 QIEQKQAMENNLISMAREIEKLRA 212 (264)
Q Consensus 189 ~~Eq~qaMEknlismarEvEKLRa 212 (264)
..||++.+.=.+|+++.-.|.||+
T Consensus 790 fse~vnniKP~i~avt~ACEE~rk 813 (1102)
T KOG1924|consen 790 FSEQVNNIKPDIVAVTAACEELRK 813 (1102)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHh
Confidence 346777788889998888887775
No 288
>PRK11281 hypothetical protein; Provisional
Probab=70.69 E-value=1.7e+02 Score=33.01 Aligned_cols=22 Identities=9% Similarity=0.288 Sum_probs=8.2
Q ss_pred HHHHHhhHHHHHHHhhhhhHhh
Q 024699 68 QRELTASKDEIHRLGQIIPKLR 89 (264)
Q Consensus 68 rqeLaaaq~Elqrl~~~~~~l~ 89 (264)
++.+..+-+++......+..++
T Consensus 86 ~k~l~~Ap~~l~~a~~~Le~Lk 107 (1113)
T PRK11281 86 KQQLAQAPAKLRQAQAELEALK 107 (1113)
T ss_pred HHHHHHhHHHHHHHHHHHHHhh
Confidence 3333333333333333333333
No 289
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=70.61 E-value=1.3e+02 Score=30.79 Aligned_cols=158 Identities=18% Similarity=0.198 Sum_probs=80.4
Q ss_pred hhhHHHHHHHHHHhhhh--cccccccccchHHHHHHHHhhHHHHHHHh-------hhhhHhhhhhHHHHHHHHHhhhhhH
Q 024699 37 MTLEEEIEIQRREMHRI--ISENRHAIDDNTHLQRELTASKDEIHRLG-------QIIPKLRADKEAHTRELFDRGLKLE 107 (264)
Q Consensus 37 ~~LEe~l~~Q~~EiqrL--l~dNqRLaathvaLrqeLaaaq~Elqrl~-------~~~~~l~ae~e~q~R~l~ek~~KmE 107 (264)
..||++|..=..++..+ +.+ ..+|+.=+.-|..++.++..|. .....++.+=-.|+.+|-+...+|.
T Consensus 164 ~~Le~~L~~ie~~F~~f~~lt~----~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~ 239 (560)
T PF06160_consen 164 EELEKQLENIEEEFSEFEELTE----NGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREME 239 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 45777775555554444 222 2344444444444444444444 4444455555577777777777777
Q ss_pred Hhhhhch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 024699 108 VELRASE--PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKA 185 (264)
Q Consensus 108 Aelra~e--~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~ 185 (264)
.+==..+ .+-.++.+++..+.. ....|..+ .+..+...++.+..+|..+-..+|.|-++
T Consensus 240 ~~gy~l~~~~i~~~i~~i~~~l~~--------------~~~~L~~l-----~l~~~~~~~~~i~~~Id~lYd~le~E~~A 300 (560)
T PF06160_consen 240 EEGYYLEHLDIEEEIEQIEEQLEE--------------ALALLKNL-----ELDEVEEENEEIEERIDQLYDILEKEVEA 300 (560)
T ss_pred HCCCCCCCCCHHHHHHHHHHHHHH--------------HHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6421111 232333333332222 11111111 23445555666666666666666666666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024699 186 NEEQIEQKQAMENNLISMAREIEKLRAELLNT 217 (264)
Q Consensus 186 ~~e~~Eq~qaMEknlismarEvEKLRaElana 217 (264)
+..--+....+.+-+-.+......|..|+...
T Consensus 301 k~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v 332 (560)
T PF06160_consen 301 KKYVEKNLKELYEYLEHAKEQNKELKEELERV 332 (560)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666655555555555555555433
No 290
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=70.57 E-value=55 Score=28.63 Aligned_cols=119 Identities=13% Similarity=0.175 Sum_probs=67.0
Q ss_pred CCCchhhHHHHHHHHHHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhh-hhHhhhhhHHHHHHHHHhhhhhHHhhh
Q 024699 33 HFHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQI-IPKLRADKEAHTRELFDRGLKLEVELR 111 (264)
Q Consensus 33 pp~P~~LEe~l~~Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~-~~~l~ae~e~q~R~l~ek~~KmEAelr 111 (264)
||--.+|++|-..=...+..--..+.-...--...+++|..++.|.+.+... ..++.+|-+ .+..++|++|+
T Consensus 33 ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~-------~~~~~~ea~L~ 105 (155)
T PRK06569 33 PKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFL-------IKKKNLEQDLK 105 (155)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 3444677766544433333333333334444445567777777777776644 556665544 45566677665
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 024699 112 ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIR 169 (264)
Q Consensus 112 a~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lr 169 (264)
. .+.+|+...-..+. ..|-+.+.++-.|+.++. .++.-.++.|+-|+
T Consensus 106 ~--~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~i~------~k~~~~~~~~~~~~ 152 (155)
T PRK06569 106 N--SINQNIEDINLAAK---QFRTNKSEAIIKLAVNII------EKIAGTKADMNLLQ 152 (155)
T ss_pred H--HHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHH------HHHhCccccHHHHh
Confidence 4 45555555544444 456666666666777766 45555566665543
No 291
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=70.31 E-value=29 Score=36.80 Aligned_cols=60 Identities=25% Similarity=0.368 Sum_probs=45.5
Q ss_pred hhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 024699 109 ELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSE 171 (264)
Q Consensus 109 elra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqE 171 (264)
..|-.+.+.-||.++.+--|+|++.-.++..+++.+.+.+-+.+.|+ .+|+-+|+..+.-
T Consensus 84 ~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL---~~Lk~~ieqaq~~ 143 (907)
T KOG2264|consen 84 QKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLEL---SALKGEIEQAQRQ 143 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHH---HHHHhHHHHHHHH
Confidence 34455678889999999999999999999999999999988777665 3445555554433
No 292
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=70.16 E-value=1.5e+02 Score=31.40 Aligned_cols=53 Identities=21% Similarity=0.317 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024699 162 RADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNT 217 (264)
Q Consensus 162 ~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElana 217 (264)
..+|--|-.++++.+++.-.| ...+..|.++.|+-+-+...++|+|+..|.+.
T Consensus 291 d~~i~~L~~di~~~~~S~~~e---~e~~~~qI~~le~~l~~~~~~leel~~kL~~~ 343 (629)
T KOG0963|consen 291 DSEIAQLSNDIERLEASLVEE---REKHKAQISALEKELKAKISELEELKEKLNSR 343 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344555555555555554333 34566788889998888888898888877654
No 293
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=70.15 E-value=1.4 Score=44.74 Aligned_cols=62 Identities=18% Similarity=0.344 Sum_probs=0.0
Q ss_pred HHhhhhcccccccccchHHHH---HHHHhhHHHHHHHhhh-----------hhHhhhhhHHHHHHHHHhhhhhHHhhhh
Q 024699 48 REMHRIISENRHAIDDNTHLQ---RELTASKDEIHRLGQI-----------IPKLRADKEAHTRELFDRGLKLEVELRA 112 (264)
Q Consensus 48 ~EiqrLl~dNqRLaathvaLr---qeLaaaq~Elqrl~~~-----------~~~l~ae~e~q~R~l~ek~~KmEAelra 112 (264)
.||..|= +||-..|-.|. ++|....+..+.|... +...+.|||.|||+++++.+-+|.|||-
T Consensus 376 qEI~~Lk---ErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd~qmksII~RL~~vEeELrr 451 (495)
T PF12004_consen 376 QEIQSLK---ERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKDSQMKSIISRLMAVEEELRR 451 (495)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHHHHHHHHhhhhhhhhhhhh
Confidence 3676553 44444444442 5666777776666433 3478899999999999999999976653
No 294
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=69.84 E-value=19 Score=32.44 Aligned_cols=69 Identities=26% Similarity=0.363 Sum_probs=37.8
Q ss_pred ccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhh-------HHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHH
Q 024699 55 SENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADK-------EAHTRELFDRGLKLEVELRASEPVRAEVVQLRAE 126 (264)
Q Consensus 55 ~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~-------e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE 126 (264)
.-|.-|-...-.|..+|...+++|+.++..-..-+.+- |.+..+++.|+..+|. +...|.+|+.+++.+
T Consensus 136 ~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~---a~~~Le~ei~~l~~~ 211 (221)
T PF05700_consen 136 IHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEV---ACEELEQEIEQLKRK 211 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 34566667777777777777777777766544444332 2334444555555554 444444444444443
No 295
>PF15294 Leu_zip: Leucine zipper
Probab=69.78 E-value=1.1e+02 Score=29.40 Aligned_cols=126 Identities=25% Similarity=0.342 Sum_probs=73.1
Q ss_pred HHHHHHHHHhhhhhHHhhhhc----------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 93 EAHTRELFDRGLKLEVELRAS----------------------EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNR 150 (264)
Q Consensus 93 e~q~R~l~ek~~KmEAelra~----------------------e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r 150 (264)
+++=|+|++.++++|..-=+. +.+..|+..++.|.++|-.--+.+..+.-.+..|-.+
T Consensus 85 elEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~k 164 (278)
T PF15294_consen 85 ELENRELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSK 164 (278)
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888876543222 2266666666666666666444444444444444344
Q ss_pred HHHhhhhhHHHHH-------------HHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024699 151 LEAENKQLIAMRA-------------DIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNT 217 (264)
Q Consensus 151 ~~ad~qqipal~a-------------Eie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElana 217 (264)
+++.++.+-.+.. +|-.|..=+..+ -.++||. -.+..++.++++-||++--.||=++...|..+
T Consensus 165 l~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~l--K~e~ek~-~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~a 241 (278)
T PF15294_consen 165 LEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAAL--KSELEKA-LQDKESQQKALEETLQSCKHELLRVQEQLSLA 241 (278)
T ss_pred HHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHH--HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchhhhcc
Confidence 4333333322111 112222222222 2344444 45566799999999999999999999998887
Q ss_pred hhcc
Q 024699 218 ERRA 221 (264)
Q Consensus 218 e~ra 221 (264)
++=.
T Consensus 242 ekeL 245 (278)
T PF15294_consen 242 EKEL 245 (278)
T ss_pred hhhH
Confidence 6543
No 296
>smart00338 BRLZ basic region leucin zipper.
Probab=69.17 E-value=24 Score=25.57 Aligned_cols=37 Identities=24% Similarity=0.541 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (264)
Q Consensus 116 lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ 152 (264)
=+..+..+..+++.|...-.+|..+|..|..++..+.
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 24 KKAEIEELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555655555555555555555554443
No 297
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=69.13 E-value=90 Score=28.28 Aligned_cols=111 Identities=19% Similarity=0.280 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 024699 89 RADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGI 168 (264)
Q Consensus 89 ~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~l 168 (264)
+...+..+..|.+.+.|+|. .+-.|...--. ........+..++..|...+.....+. .-.+..-++.|
T Consensus 29 r~~ee~r~~~i~e~i~~Le~------~l~~E~k~R~E---~~~~lq~~~e~~i~~~~~~v~~~~~~~--~~~~~~~l~~L 97 (247)
T PF06705_consen 29 REQEEQRFQDIKEQIQKLEK------ALEAEVKRRVE---SNKKLQSKFEEQINNMQERVENQISEK--QEQLQSRLDSL 97 (247)
T ss_pred HHhHHHHHHHHHHHHHHHHH------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024699 169 RSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLN 216 (264)
Q Consensus 169 rqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElan 216 (264)
-..+..+-..|..|+....... |.+..++.++|..|..-+.+
T Consensus 98 ~~ri~~L~~~i~ee~~~r~~~i------e~~~~~l~~~l~~l~~~~~~ 139 (247)
T PF06705_consen 98 NDRIEALEEEIQEEKEERPQDI------EELNQELVRELNELQEAFEN 139 (247)
T ss_pred HHHHHHHHHHHHHHHHHhhHHH------HHHHHHHHHHHHHHHHHHHH
No 298
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=69.00 E-value=46 Score=25.32 Aligned_cols=46 Identities=22% Similarity=0.235 Sum_probs=35.2
Q ss_pred hhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 104 LKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVN 149 (264)
Q Consensus 104 ~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~ 149 (264)
.|+|.=|+-.+-++.|=.+++.++..+.+.|..|..+.+...+.+.
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvE 52 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVE 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777888888888888888888888888888777766544
No 299
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=68.65 E-value=31 Score=32.92 Aligned_cols=68 Identities=18% Similarity=0.314 Sum_probs=35.1
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHhhh
Q 024699 111 RASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENK----QLIAMRADIDGIRSELVEARRA 178 (264)
Q Consensus 111 ra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~q----qipal~aEie~lrqElqr~Raa 178 (264)
+.+.|++.++.++..++......-++...+++.+...|..++.+.+ +.-.|..+++....-|.++..-
T Consensus 214 ~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~L 285 (344)
T PF12777_consen 214 KEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKL 285 (344)
T ss_dssp CCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHH
Confidence 4556777777766666655555555555555555555554444432 2233344444444445554443
No 300
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=68.52 E-value=85 Score=27.79 Aligned_cols=11 Identities=18% Similarity=0.377 Sum_probs=4.5
Q ss_pred HHHhhHHHHHH
Q 024699 70 ELTASKDEIHR 80 (264)
Q Consensus 70 eLaaaq~Elqr 80 (264)
.+..++.+-..
T Consensus 28 ~~~~A~~~A~~ 38 (201)
T PF12072_consen 28 KLEQAEKEAEQ 38 (201)
T ss_pred HHHHHHHHHHH
Confidence 34444444333
No 301
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=68.44 E-value=57 Score=25.77 Aligned_cols=31 Identities=16% Similarity=0.335 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTK 146 (264)
Q Consensus 116 lk~El~q~raE~q~L~~~RQeL~~qvq~l~q 146 (264)
|-+||.++.+.+.+|.....|++..+.....
T Consensus 51 La~eLD~~~ar~~~Le~~~~Evs~rL~~a~e 81 (89)
T PF13747_consen 51 LAQELDQAEARANRLEEANREVSRRLDSAIE 81 (89)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555444433
No 302
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.31 E-value=82 Score=29.94 Aligned_cols=41 Identities=22% Similarity=0.444 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024699 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN 155 (264)
Q Consensus 115 ~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~ 155 (264)
.+..++..+..||+.|..--.++..+++.+.++..+.++++
T Consensus 42 ~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~ei 82 (265)
T COG3883 42 ELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEI 82 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666666666555554
No 303
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=68.13 E-value=73 Score=26.90 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024699 192 QKQAMENNLISMAREIEKLRAELLNTER 219 (264)
Q Consensus 192 q~qaMEknlismarEvEKLRaElanae~ 219 (264)
+.++.++..=..-.++++|+++|-++=.
T Consensus 85 ri~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 85 RIKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567777777777778888888776543
No 304
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=67.87 E-value=44 Score=32.34 Aligned_cols=75 Identities=16% Similarity=0.234 Sum_probs=48.2
Q ss_pred hhHHhhhhchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHHhhhh
Q 024699 105 KLEVELRASEPVRAEVVQLRAEVQ-KLNSSRQELTTQIKGLTKDVNRLEAE----NKQLIAMRADIDGIRSELVEARRAF 179 (264)
Q Consensus 105 KmEAelra~e~lk~El~q~raE~q-~L~~~RQeL~~qvq~l~qeL~r~~ad----~qqipal~aEie~lrqElqr~Raa~ 179 (264)
|+|++-+..+..-.++.++-..+. .+..++|.|+.|.+.+..+|..+..- .+.+..++.||..+++++--.+...
T Consensus 119 k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~~l~~~~~~~s~~~~k~esei~~Ik~lvln~~~f~ 198 (300)
T KOG2629|consen 119 KLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRALASLKNTLVQLSRNIEKLESEINTIKQLVLNMSNFA 198 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccccC
Confidence 455555555444444444333332 34556777777777777777777665 5667778899999999887766554
No 305
>PF15294 Leu_zip: Leucine zipper
Probab=67.12 E-value=1.2e+02 Score=29.03 Aligned_cols=77 Identities=21% Similarity=0.367 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHhhhh-----hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 137 LTTQIKGLTKDVNRLEAENK-QLIAMRADIDGIRSELVEARRAF-----EFEKKANEEQIEQKQAMENNLISMAREIEKL 210 (264)
Q Consensus 137 L~~qvq~l~qeL~r~~ad~q-qipal~aEie~lrqElqr~Raa~-----EyEKk~~~e~~Eq~qaMEknlismarEvEKL 210 (264)
|..++..+..++.+...|.. +.-+|...+..-.+|+.+....+ |.|||... .-+-.-|-+=|..=.-+|--|
T Consensus 195 LE~k~a~lK~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLekKfqq--T~ay~NMk~~ltkKn~QiKeL 272 (278)
T PF15294_consen 195 LENKMAALKSELEKALQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELEKKFQQ--TAAYRNMKEILTKKNEQIKEL 272 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHHHHhCc--cHHHHHhHHHHHhccHHHHHH
Confidence 45566666666666655544 56666677777777776665543 55666542 444444544444444456666
Q ss_pred HHHHh
Q 024699 211 RAELL 215 (264)
Q Consensus 211 RaEla 215 (264)
|-.|.
T Consensus 273 Rkrl~ 277 (278)
T PF15294_consen 273 RKRLA 277 (278)
T ss_pred HHHhc
Confidence 65543
No 306
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=67.00 E-value=33 Score=28.15 Aligned_cols=12 Identities=58% Similarity=0.720 Sum_probs=5.9
Q ss_pred HHHHHhhhhhHH
Q 024699 97 RELFDRGLKLEV 108 (264)
Q Consensus 97 R~l~ek~~KmEA 108 (264)
++|+++...||.
T Consensus 4 ~~l~~~l~~le~ 15 (107)
T PF06156_consen 4 KELFDRLDQLEQ 15 (107)
T ss_pred HHHHHHHHHHHH
Confidence 345555555554
No 307
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=66.64 E-value=2.2e+02 Score=31.79 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=27.8
Q ss_pred HHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 97 RELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKG 143 (264)
Q Consensus 97 R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~ 143 (264)
+.+..++.|+..++.+.+..-.|+.++..--|+....--.|+++.|.
T Consensus 197 ~~le~k~~k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ 243 (1265)
T KOG0976|consen 197 KALEEKLEKFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQT 243 (1265)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 45666777777777777666666665555444444444445555444
No 308
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=66.46 E-value=1.3e+02 Score=29.18 Aligned_cols=90 Identities=20% Similarity=0.327 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 024699 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL-----IAMRADIDGIRSELVEARRAFEFEKKANEEQIEQ 192 (264)
Q Consensus 118 ~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqi-----pal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq 192 (264)
.+|+.--+ .|+.+|..|-.++..-.+.+.+..+++++. -+|.+|||..++|-...=. .+...-|-
T Consensus 160 KDLqRctv---SL~RYr~~lkee~d~S~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL~-------aRqkkAee 229 (302)
T PF07139_consen 160 KDLQRCTV---SLTRYRVVLKEEMDSSIKKIKQTFAELQSCLMDREVALLAEMDKVKAEAMEILD-------ARQKKAEE 229 (302)
T ss_pred HHHHHHHH---HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 67776666 899999999999999999999999998875 4788999999998654322 24445566
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHhhh
Q 024699 193 KQAMENNLISMARE-IEKLRAELLNT 217 (264)
Q Consensus 193 ~qaMEknlismarE-vEKLRaElana 217 (264)
++.|..--+.|+-+ |--|||||-.+
T Consensus 230 Lkrltd~A~~MsE~Ql~ELRadIK~f 255 (302)
T PF07139_consen 230 LKRLTDRASQMSEEQLAELRADIKHF 255 (302)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 77777777888876 88899999865
No 309
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=66.38 E-value=1.1e+02 Score=28.22 Aligned_cols=84 Identities=15% Similarity=0.098 Sum_probs=42.6
Q ss_pred hhhhhHHhhhhchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 024699 102 RGLKLEVELRASEPVRAEVVQLRAEVQK-LNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (264)
Q Consensus 102 k~~KmEAelra~e~lk~El~q~raE~q~-L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~E 180 (264)
|-.++..+|...+..+.|..+...+.++ |..++++-..-+...+++-.+...+. +...+.|++.+ +..+|+.++
T Consensus 37 R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~i--l~~A~~ea~~~---~~~a~~~ie 111 (250)
T PRK14474 37 RQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHL--LNEAREDVATA---RDEWLEQLE 111 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH---HHHHHHHHH
Confidence 3444555555555555555555554432 33344444444444444444443333 33444554444 356777888
Q ss_pred hhhhhhHHHH
Q 024699 181 FEKKANEEQI 190 (264)
Q Consensus 181 yEKk~~~e~~ 190 (264)
.||+.....+
T Consensus 112 ~Ek~~a~~~L 121 (250)
T PRK14474 112 REKQEFFKAL 121 (250)
T ss_pred HHHHHHHHHH
Confidence 8877654433
No 310
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=66.36 E-value=37 Score=32.65 Aligned_cols=76 Identities=22% Similarity=0.328 Sum_probs=0.0
Q ss_pred hhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhh
Q 024699 102 RGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEF 181 (264)
Q Consensus 102 k~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~Ey 181 (264)
|+++||.+|-.-.....||..-.. .|..+-+||...|.+|..-+--++ |++-.-+.||+.|.+++..+--++.-
T Consensus 237 ria~Le~eLAmQKs~seElkssq~---eL~dfm~eLdedVEgmqsTiliLQ---q~Lketr~~Iq~l~k~~~q~sqav~d 310 (330)
T KOG2991|consen 237 RIAELEIELAMQKSQSEELKSSQE---ELYDFMEELDEDVEGMQSTILILQ---QKLKETRKEIQRLKKGLEQVSQAVGD 310 (330)
T ss_pred cHHHHHHHHHHHHhhHHHHHHhHH---HHHHHHHHHHHHHhcchhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhcc
Q ss_pred hh
Q 024699 182 EK 183 (264)
Q Consensus 182 EK 183 (264)
+|
T Consensus 311 ~~ 312 (330)
T KOG2991|consen 311 KK 312 (330)
T ss_pred cc
No 311
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=66.28 E-value=95 Score=27.50 Aligned_cols=6 Identities=33% Similarity=0.523 Sum_probs=2.8
Q ss_pred HHHHHH
Q 024699 67 LQRELT 72 (264)
Q Consensus 67 LrqeLa 72 (264)
++++|=
T Consensus 59 vr~~ly 64 (189)
T PF10211_consen 59 VREELY 64 (189)
T ss_pred HHHHHH
Confidence 445543
No 312
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=65.97 E-value=1.3e+02 Score=29.04 Aligned_cols=72 Identities=28% Similarity=0.445 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 136 ELTTQIKGLTKDVNRLEA---ENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRA 212 (264)
Q Consensus 136 eL~~qvq~l~qeL~r~~a---d~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRa 212 (264)
+|..++..|.++|...+. .+-++-.|.+|++.++.+..- -..-=.++..|.|..-..|+.+-++++.+|.
T Consensus 135 ~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e-------~~eki~~la~eaqe~he~m~k~~~~~De~Rk 207 (294)
T COG1340 135 ELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKARE-------IHEKIQELANEAQEYHEEMIKLFEEADELRK 207 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555554432 233344444444444444333 2333456777778888888888888777776
Q ss_pred HH
Q 024699 213 EL 214 (264)
Q Consensus 213 El 214 (264)
++
T Consensus 208 ea 209 (294)
T COG1340 208 EA 209 (294)
T ss_pred HH
Confidence 64
No 313
>PRK15396 murein lipoprotein; Provisional
Probab=65.93 E-value=31 Score=27.03 Aligned_cols=11 Identities=36% Similarity=0.543 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 024699 119 EVVQLRAEVQK 129 (264)
Q Consensus 119 El~q~raE~q~ 129 (264)
++.++.++|+.
T Consensus 26 kvd~LssqV~~ 36 (78)
T PRK15396 26 KIDQLSSDVQT 36 (78)
T ss_pred hHHHHHHHHHH
Confidence 34444444444
No 314
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=65.90 E-value=54 Score=28.68 Aligned_cols=62 Identities=15% Similarity=0.213 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhh
Q 024699 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEF 181 (264)
Q Consensus 118 ~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~Ey 181 (264)
.-+.++..++.+....-.-|.+.|+.....|....+. .-+.+..||..+.+=+.|||.||++
T Consensus 102 ~~~~~Lyq~L~~hqe~erRL~~mi~~~e~~l~~~~~~--~~~~lq~ei~a~e~RL~RCr~Ai~~ 163 (173)
T PF07445_consen 102 KPIHQLYQRLAQHQEYERRLLAMIQEREQQLEQAQSF--EQQQLQQEILALEQRLQRCRQAIEK 163 (173)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666667777777777777777766666 5667888999999999999999975
No 315
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=65.64 E-value=90 Score=27.03 Aligned_cols=45 Identities=29% Similarity=0.388 Sum_probs=38.1
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 024699 176 RRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERR 220 (264)
Q Consensus 176 Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElanae~r 220 (264)
=.|+|+-||-..++-.-.+.|+.+|--++..+..|..++...-.+
T Consensus 93 ~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~ 137 (145)
T COG1730 93 DEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQK 137 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888899999999999999999999999988765443
No 316
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=65.59 E-value=1.1e+02 Score=27.92 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHH
Q 024699 166 DGIRSELVEARRAFEFEKKANEEQIE 191 (264)
Q Consensus 166 e~lrqElqr~Raa~EyEKk~~~e~~E 191 (264)
+....+.++.=+.+.-.|..+.+..+
T Consensus 155 ~~v~~~y~~~~~~wrk~krmf~ei~d 180 (201)
T KOG4603|consen 155 EQVYREYQKYCKEWRKRKRMFREIID 180 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555544444444444444433
No 317
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=65.29 E-value=1.7e+02 Score=30.19 Aligned_cols=19 Identities=11% Similarity=0.300 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 024699 161 MRADIDGIRSELVEARRAF 179 (264)
Q Consensus 161 l~aEie~lrqElqr~Raa~ 179 (264)
+..+++.+..++..+.+.+
T Consensus 426 l~e~l~~l~~~l~~~~~~~ 444 (650)
T TIGR03185 426 LLEELGEAQNELFRSEAEI 444 (650)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 318
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=64.85 E-value=7.8 Score=42.07 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhhhhhhhhh
Q 024699 166 DGIRSELVEARRAFEFEKK 184 (264)
Q Consensus 166 e~lrqElqr~Raa~EyEKk 184 (264)
++++=++.-+=+|||.-+|
T Consensus 795 nniKP~i~avt~ACEE~rk 813 (1102)
T KOG1924|consen 795 NNIKPDIVAVTAACEELRK 813 (1102)
T ss_pred hhcChHHHHHHHHHHHHHh
Confidence 3344444444445544443
No 319
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.67 E-value=2e+02 Score=30.68 Aligned_cols=59 Identities=22% Similarity=0.354 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHHHH----HHHHHHHHHHHHHHHHH---HHHHHHhhhhhcc
Q 024699 163 ADIDGIRSELVEARRAFEFEKKANEEQIE----QKQAMENNLISMAREIE---KLRAELLNTERRA 221 (264)
Q Consensus 163 aEie~lrqElqr~Raa~EyEKk~~~e~~E----q~qaMEknlismarEvE---KLRaElanae~ra 221 (264)
-|-+++++|+.|+--.+|+-+..--|..- --+-||.-|-+.-.|-| .||-||.-.-++-
T Consensus 194 VEyEglkheikRleEe~elln~q~ee~~~Lk~IAekQlEEALeTlq~EReqk~alkkEL~q~~n~e 259 (772)
T KOG0999|consen 194 VEYEGLKHEIKRLEEETELLNSQLEEAIRLKEIAEKQLEEALETLQQEREQKNALKKELSQYRNAE 259 (772)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcchh
Confidence 47799999999988888887654222111 12346666777666644 3677776444443
No 320
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=64.57 E-value=1.5e+02 Score=29.09 Aligned_cols=6 Identities=33% Similarity=0.761 Sum_probs=3.2
Q ss_pred hhhhcc
Q 024699 216 NTERRA 221 (264)
Q Consensus 216 nae~ra 221 (264)
|+++|.
T Consensus 209 nadkrh 214 (389)
T KOG4687|consen 209 NADKRH 214 (389)
T ss_pred cCCCCC
Confidence 555554
No 321
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=64.48 E-value=1.1e+02 Score=27.55 Aligned_cols=81 Identities=17% Similarity=0.306 Sum_probs=37.2
Q ss_pred cccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 024699 58 RHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQEL 137 (264)
Q Consensus 58 qRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL 137 (264)
..+-..--.|++-|..+=.++..+...+..++.. +......+.+. +.+.|-..|.+..+++..+....++.
T Consensus 34 ~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~-~~~~~~~~~~~--------s~~eLeq~l~~~~~~L~~~q~~l~~~ 104 (240)
T PF12795_consen 34 KKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQ-DAPSKEILANL--------SLEELEQRLSQEQAQLQELQEQLQQE 104 (240)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhcc-ccccccCcccC--------CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555566666666666666555555433 22222222111 22344455555555555544444444
Q ss_pred HHHHHHHHHH
Q 024699 138 TTQIKGLTKD 147 (264)
Q Consensus 138 ~~qvq~l~qe 147 (264)
.+++..+..-
T Consensus 105 ~~~l~~~~~~ 114 (240)
T PF12795_consen 105 NSQLIEIQTR 114 (240)
T ss_pred HHHHHHHHcc
Confidence 4444443333
No 322
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=64.41 E-value=81 Score=26.20 Aligned_cols=58 Identities=22% Similarity=0.260 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Q 024699 165 IDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRAC 222 (264)
Q Consensus 165 ie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElanae~ra~ 222 (264)
.+.+.+++.....+|+-.++.-..+-+--..-.|.|-.--.|+++||+.|.+-.+|-+
T Consensus 9 ~~~~~~~~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~Lr~dl~aG~~RL~ 66 (125)
T PF03245_consen 9 RDQAQAALEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDRLRADLAAGNKRLR 66 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcCCceEE
Confidence 3333344444444444433333333333344556677788899999999999998875
No 323
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=64.41 E-value=56 Score=28.36 Aligned_cols=72 Identities=22% Similarity=0.380 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 024699 95 HTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQK-LNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSEL 172 (264)
Q Consensus 95 q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~-L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqEl 172 (264)
.+-.++-+..++|+ ..++++..........++ +...-+.+..+++.+.++|.+.+.|+ .+|+...+++..|+
T Consensus 119 r~~~li~~l~~~~~---~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~---~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 119 RVHSLIKELIKLEE---KLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEI---EALKKQSEGLQKEY 191 (192)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhc
No 324
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=64.37 E-value=92 Score=26.99 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=28.1
Q ss_pred cccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhH
Q 024699 58 RHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKE 93 (264)
Q Consensus 58 qRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e 93 (264)
+.|++.+-.|.+++...++++..|+..+..+++=.+
T Consensus 9 e~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~ 44 (145)
T COG1730 9 EELAAQLQILQSQIESLQAQIAALNAAISELQTAIE 44 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888888888888888887774433
No 325
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=64.28 E-value=81 Score=26.01 Aligned_cols=65 Identities=18% Similarity=0.208 Sum_probs=35.1
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 024699 112 ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (264)
Q Consensus 112 a~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 179 (264)
+.+.+-.++.+...-+.++...-..-..+++...+.-.++... |-.++.+|+.|+.+|..++...
T Consensus 47 ~~e~~l~~l~~~e~~~~k~q~~~~~n~~e~e~Y~~~~~~i~~~---i~~~k~~ie~lk~~L~~ak~~r 111 (139)
T PF05615_consen 47 LYERLLKELAQFEFSILKSQLILEMNKRERENYEQLNEEIEQE---IEQAKKEIEELKEELEEAKRVR 111 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666777776666665555444444444444433333332 2355666666666666665543
No 326
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=63.46 E-value=73 Score=25.19 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 118 AEVVQLRAEVQKLNSSRQELTTQI 141 (264)
Q Consensus 118 ~El~q~raE~q~L~~~RQeL~~qv 141 (264)
..+++++.++++|...++.|.++.
T Consensus 6 ~~~q~l~~~~~~l~~~~~~l~~~~ 29 (105)
T cd00632 6 AQLQQLQQQLQAYIVQRQKVEAQL 29 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555554444
No 327
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=63.35 E-value=2.4 Score=45.48 Aligned_cols=155 Identities=23% Similarity=0.283 Sum_probs=0.0
Q ss_pred cccccchHHHHHHHHhhHHHHHHHhhhhhHhhhh---hHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHH
Q 024699 58 RHAIDDNTHLQRELTASKDEIHRLGQIIPKLRAD---KEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSR 134 (264)
Q Consensus 58 qRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae---~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~R 134 (264)
..|--+..-|..|+..+..+|....+.+..+..- -|.++-++-.++..+ .-..+.+..|...+.+++-+|...-
T Consensus 345 ~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~---~~e~d~~q~e~r~~~te~~~Lk~~l 421 (859)
T PF01576_consen 345 SSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEEL---QAERDAAQREARELETELFKLKNEL 421 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHhhh
Confidence 3444445555566666666666555544433311 111111111111111 1123444455555555555666555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhh----hHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 135 QELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKA----NEEQIEQKQAMENNLISMAREIEKL 210 (264)
Q Consensus 135 QeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~----~~e~~Eq~qaMEknlismarEvEKL 210 (264)
.++..++..+..+...++.++.-+..-..+...--++|.+.+..+|-++.- --|.-..+++.|.....+--+++.+
T Consensus 422 ee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~ 501 (859)
T PF01576_consen 422 EELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQL 501 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666655555555555555444333333333335555555555544431 2223334455555555555555555
Q ss_pred HHHHh
Q 024699 211 RAELL 215 (264)
Q Consensus 211 RaEla 215 (264)
|+++.
T Consensus 502 r~e~e 506 (859)
T PF01576_consen 502 RQEIE 506 (859)
T ss_dssp -----
T ss_pred HHHHH
Confidence 55543
No 328
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=63.26 E-value=24 Score=24.73 Aligned_cols=35 Identities=20% Similarity=0.427 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDV 148 (264)
Q Consensus 114 e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL 148 (264)
+.||..-..+.+|-.+|....+.|.++|+.++..|
T Consensus 8 ~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 8 DALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566666666666666666666666666665544
No 329
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=63.18 E-value=2.4 Score=42.79 Aligned_cols=136 Identities=20% Similarity=0.301 Sum_probs=0.0
Q ss_pred cchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 62 DDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQI 141 (264)
Q Consensus 62 athvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qv 141 (264)
..|.+|-|.|-.++.|+--..........+..+ -+.-...+....|+.+||.-||.|...=.=|---+
T Consensus 391 ~~~G~Lv~~iletkk~~e~~~~~~~~~~~~~~~------------~~~~~~~~~~~~ei~~lr~~iQ~l~~s~~PLgk~~ 458 (539)
T PF10243_consen 391 EEHGGLVQKILETKKELEKSANSEEKEEKEQSL------------AASKKERESVEKEIEKLRESIQTLCRSANPLGKLM 458 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhcCHHHHHHHHHHHHHhhcccccccccccccc------------hhhhccchhHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 356666666666666665544333211111111 12222334555566666665555444333332222
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024699 142 KGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEE----QIEQKQAMENNLISMAREIEKLRAELLNT 217 (264)
Q Consensus 142 q~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e----~~Eq~qaMEknlismarEvEKLRaElana 217 (264)
+-+..| |-+|..||+--+.|....-.++..|++...+ +..|+..+|.++.-+--.|-.+||-|.+-
T Consensus 459 d~iqED----------id~M~~El~~W~~e~~~~~~~l~~e~~~t~~~~~pl~~~L~ele~~I~~~~~~i~~~ka~Il~N 528 (539)
T PF10243_consen 459 DYIQED----------IDSMQKELEMWRSEYRQHAEALQEEQSITDEALEPLKAQLAELEQQIKDQQDKICAVKANILKN 528 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222222 2344555555555555555666666665444 33566666776666666666667666544
Q ss_pred hh
Q 024699 218 ER 219 (264)
Q Consensus 218 e~ 219 (264)
+.
T Consensus 529 e~ 530 (539)
T PF10243_consen 529 EE 530 (539)
T ss_dssp --
T ss_pred HH
Confidence 43
No 330
>PF10153 DUF2361: Uncharacterised conserved protein (DUF2361); InterPro: IPR019310 This entry represents the rRNA-processing protein EFG1 family. EFG1 is involved in rRNA processing.
Probab=62.99 E-value=89 Score=26.05 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=30.1
Q ss_pred HHHHHHHhhhhcccccccccchHHHHHHHHhhHHHHHH
Q 024699 43 IEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHR 80 (264)
Q Consensus 43 l~~Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqr 80 (264)
|-.|.+.|+|||.-+.--+.-.+.+.++|.+.+.++..
T Consensus 2 lK~riRdieRLL~r~~Lp~~vR~~~Er~L~~L~~~l~~ 39 (114)
T PF10153_consen 2 LKKRIRDIERLLKRKDLPADVRVEKERELEALKRELEE 39 (114)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999987755567788888888888887765
No 331
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.72 E-value=1.9e+02 Score=29.85 Aligned_cols=38 Identities=11% Similarity=0.201 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhh
Q 024699 144 LTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEF 181 (264)
Q Consensus 144 l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~Ey 181 (264)
.++=|+++++.--+|-.+..+-.++++|+--+-.-|+-
T Consensus 450 aykllt~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~ 487 (521)
T KOG1937|consen 450 AYKLLTRIHLNCMEILEMIRETGALKREVRDLESQIYV 487 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhH
Confidence 45556666666666666666666776666544444444
No 332
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=62.71 E-value=2.1e+02 Score=30.70 Aligned_cols=17 Identities=18% Similarity=0.261 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHh
Q 024699 199 NLISMAREIEKLRAELL 215 (264)
Q Consensus 199 nlismarEvEKLRaEla 215 (264)
.+...-+++.+++..+.
T Consensus 608 ~~~~~~~~l~~~~~~~~ 624 (782)
T PRK00409 608 ELIEARKRLNKANEKKE 624 (782)
T ss_pred HHHHHHHHHHHhhhhhh
Confidence 33444445555555433
No 333
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=62.69 E-value=1.1e+02 Score=26.92 Aligned_cols=47 Identities=28% Similarity=0.384 Sum_probs=19.2
Q ss_pred cchHHHHHHHHhhHHHHHHHh-hhhhHhhhhhHHHHHHHHHhhhhhHH
Q 024699 62 DDNTHLQRELTASKDEIHRLG-QIIPKLRADKEAHTRELFDRGLKLEV 108 (264)
Q Consensus 62 athvaLrqeLaaaq~Elqrl~-~~~~~l~ae~e~q~R~l~ek~~KmEA 108 (264)
+...-|++++..+..++..+. .+...++.-.|---|..+.+...++.
T Consensus 51 a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~ 98 (221)
T PF04012_consen 51 ANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEE 98 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 333344444444444444443 22233344444444444444444443
No 334
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=62.48 E-value=1e+02 Score=30.16 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhhhhhccc
Q 024699 205 REIEKLRAELLNTERRAC 222 (264)
Q Consensus 205 rEvEKLRaElanae~ra~ 222 (264)
-.+++-+-+|+++.-|+.
T Consensus 197 a~~~~A~l~L~~T~IrAP 214 (352)
T COG1566 197 AALDQAKLDLERTVIRAP 214 (352)
T ss_pred HHHHHHHHHhhCCEEECC
Confidence 345555556667777774
No 335
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=62.42 E-value=96 Score=26.22 Aligned_cols=73 Identities=22% Similarity=0.304 Sum_probs=42.2
Q ss_pred HHhhhhhHHhhhhchhHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 024699 100 FDRGLKLEVELRASEPVRAEVVQLRAEVQ------------KLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDG 167 (264)
Q Consensus 100 ~ek~~KmEAelra~e~lk~El~q~raE~q------------~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~ 167 (264)
+-...++|++|+-.+-+..||..+-.|.. +...+.++|..++..+.-.+..+. .|.-.+..+++.
T Consensus 26 ~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLe---kQe~~l~e~l~e 102 (119)
T COG1382 26 ILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLE---KQEEKLQERLEE 102 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 33445666777777777777776665521 223445555555555555544443 344555666777
Q ss_pred HHHHHHHH
Q 024699 168 IRSELVEA 175 (264)
Q Consensus 168 lrqElqr~ 175 (264)
|+.+|+.+
T Consensus 103 Lq~~i~~~ 110 (119)
T COG1382 103 LQSEIQKA 110 (119)
T ss_pred HHHHHHHH
Confidence 77776654
No 336
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=61.82 E-value=1.3e+02 Score=33.75 Aligned_cols=59 Identities=19% Similarity=0.355 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024699 157 QLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELL 215 (264)
Q Consensus 157 qipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaEla 215 (264)
+|-.+..||+.++.+|.....-+-++-..+.++.+.....+++|..-..|++-+..|+.
T Consensus 449 ~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~ 507 (1041)
T KOG0243|consen 449 QIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQ 507 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555555555555555554444444444443
No 337
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=61.67 E-value=1.3e+02 Score=27.38 Aligned_cols=82 Identities=18% Similarity=0.131 Sum_probs=41.0
Q ss_pred HhhhhhHHhhhhchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 024699 101 DRGLKLEVELRASEPVRAEVVQLRAEVQK-LNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (264)
Q Consensus 101 ek~~KmEAelra~e~lk~El~q~raE~q~-L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 179 (264)
+|-.+++.+|...+..+.|......+.+. |..++++-..-+.....+-.+...+. +...+.|++ +.+..+|..+
T Consensus 36 ~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~eA~~~~~~i--~~~A~~ea~---~~~~~a~~~i 110 (246)
T TIGR03321 36 AREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRL--LDEAREEAD---EIREKWQEAL 110 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH---HHHHHHHHHH
Confidence 44455556666666666666555555542 33444444444444444444333333 333333333 3344567777
Q ss_pred hhhhhhhH
Q 024699 180 EFEKKANE 187 (264)
Q Consensus 180 EyEKk~~~ 187 (264)
+.|++.-.
T Consensus 111 e~E~~~a~ 118 (246)
T TIGR03321 111 RREQAALS 118 (246)
T ss_pred HHHHHHHH
Confidence 77776544
No 338
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=61.38 E-value=12 Score=36.33 Aligned_cols=27 Identities=11% Similarity=0.316 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 024699 194 QAMENNLISMAREIEKLRAELLNTERR 220 (264)
Q Consensus 194 qaMEknlismarEvEKLRaElanae~r 220 (264)
++|+-++-.|...|--+-.-|.+-++|
T Consensus 122 ~~lsTdvsNLksdVSt~aL~ItdLe~R 148 (326)
T PF04582_consen 122 SALSTDVSNLKSDVSTQALNITDLESR 148 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhhhcchHhhHHHH
Confidence 344444444444433333333344444
No 339
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=61.27 E-value=1.4e+02 Score=27.58 Aligned_cols=58 Identities=19% Similarity=0.338 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Q 024699 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEAR 176 (264)
Q Consensus 116 lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~R 176 (264)
|-.++.++..+...|...++++-...+.|.........+..+ |.+++.....++.++.
T Consensus 38 Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~---Le~e~~e~~~~i~~l~ 95 (246)
T PF00769_consen 38 LEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQ---LEQELREAEAEIARLE 95 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 334555555566666666666655555555554444444333 3344444444444443
No 340
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.18 E-value=1.6e+02 Score=32.48 Aligned_cols=43 Identities=23% Similarity=0.364 Sum_probs=22.6
Q ss_pred HHHHHHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhh
Q 024699 44 EIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIP 86 (264)
Q Consensus 44 ~~Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~ 86 (264)
..|..|+.+++.+|.+|-..-.-|-.+|.--...++-+.+.+.
T Consensus 733 ~t~~eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~ 775 (970)
T KOG0946|consen 733 KTQNEELNAALSENKKLENDQELLTKELNKKNADIESFKATQR 775 (970)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 3444555555555555555555555555555555555554444
No 341
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=60.77 E-value=9.3 Score=29.53 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=15.1
Q ss_pred CCCCCCCCCCCCCC----CCC-CCCCCCCC
Q 024699 226 GSAYGLLNGCPDMR----YPG-GAFDNGYG 250 (264)
Q Consensus 226 g~~Yg~~yg~p~~~----~~~-~~Y~~~Yg 250 (264)
|..|+++||+|--- |.+ |-|+.+||
T Consensus 25 g~~y~p~y~~~~~y~gg~YngYngY~~~YG 54 (71)
T PF04202_consen 25 GYYYYPGYNAPRRYNGGYYNGYNGYPRRYG 54 (71)
T ss_pred ccccCCCCCCCcccCCcccccccCcCcccC
Confidence 67788888776531 222 45666665
No 342
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=60.74 E-value=2.8 Score=44.93 Aligned_cols=88 Identities=23% Similarity=0.346 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 130 LNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEK 209 (264)
Q Consensus 130 L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEK 209 (264)
+...++.|-+++..|...|. ..++.-....-.|..++..|.-+...++.....+.+..++...+|+.+..+..|++-
T Consensus 544 ~~r~kkKLE~~l~eLe~~ld---~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~elee 620 (859)
T PF01576_consen 544 ALREKKKLESDLNELEIQLD---HANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELEE 620 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555443332 222333344455666777777777888888899999999999999999999999999
Q ss_pred HHHHHhhhhhc
Q 024699 210 LRAELLNTERR 220 (264)
Q Consensus 210 LRaElanae~r 220 (264)
|+..+..+++-
T Consensus 621 ~~~~~~~a~r~ 631 (859)
T PF01576_consen 621 LREALEQAERA 631 (859)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 99999988654
No 343
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=60.26 E-value=48 Score=27.45 Aligned_cols=12 Identities=42% Similarity=0.512 Sum_probs=6.3
Q ss_pred HHHHHhhhhhHH
Q 024699 97 RELFDRGLKLEV 108 (264)
Q Consensus 97 R~l~ek~~KmEA 108 (264)
++|+++...||.
T Consensus 4 ~elfd~l~~le~ 15 (110)
T PRK13169 4 KEIFDALDDLEQ 15 (110)
T ss_pred hHHHHHHHHHHH
Confidence 445555555554
No 344
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=60.18 E-value=1e+02 Score=29.32 Aligned_cols=86 Identities=22% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 66 HLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLT 145 (264)
Q Consensus 66 aLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~ 145 (264)
.|++||.-.-.+++-|.....++. -+-+--+..-+..+|-+-++|.-.-|==+.-.+.+.
T Consensus 161 ~l~~eLqkr~~~v~~l~~q~~k~~--------------------~~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ 220 (289)
T COG4985 161 PLERELQKRLLEVETLRDQVDKMV--------------------EQQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYV 220 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHH
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 024699 146 KDVNRLEAENKQLIAMRADIDGIRSELVE 174 (264)
Q Consensus 146 qeL~r~~ad~qqipal~aEie~lrqElqr 174 (264)
.|+.+++...+++. .++++|++|+.|
T Consensus 221 ae~seLq~r~~~l~---~~L~~L~~e~~r 246 (289)
T COG4985 221 AEKSELQKRLAQLQ---TELDALRAELER 246 (289)
T ss_pred HHHHHHHHHHHHHH---HHHHHHhhhhhh
No 345
>PRK07720 fliJ flagellar biosynthesis chaperone; Validated
Probab=60.08 E-value=98 Score=25.57 Aligned_cols=82 Identities=11% Similarity=0.167 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q 024699 117 RAEVVQLRAEVQKLNSSRQELTTQIKGLTK---DVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQK 193 (264)
Q Consensus 117 k~El~q~raE~q~L~~~RQeL~~qvq~l~q---eL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~ 193 (264)
+.++.+....+..|...+.+.......... ....+..=..-+..|..-|...++.+.+++..+|.-++.-.+-.-..
T Consensus 29 ~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~g~~~~~l~~~~~fl~~L~~~i~~q~~~v~~~~~~ve~~r~~~~ea~~~~ 108 (146)
T PRK07720 29 VSRFEQVAEKLYELLKQKEDLEQAKEEKLQSGLSIQEIRHYQQFVTNLERTIDHYQLLVMQAREQMNRKQQDLTEKNIEV 108 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554333110 11122222344677778888888888888888888888888887777
Q ss_pred HHHHH
Q 024699 194 QAMEN 198 (264)
Q Consensus 194 qaMEk 198 (264)
++|||
T Consensus 109 k~~ek 113 (146)
T PRK07720 109 KKYEK 113 (146)
T ss_pred HHHHH
Confidence 77776
No 346
>PLN02678 seryl-tRNA synthetase
Probab=60.03 E-value=88 Score=31.55 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 119 EVVQLRAEVQKLNSSRQELTTQIK 142 (264)
Q Consensus 119 El~q~raE~q~L~~~RQeL~~qvq 142 (264)
+..++..++..|.+.|..++.++.
T Consensus 41 ~~r~l~~~~e~lr~erN~~sk~I~ 64 (448)
T PLN02678 41 EWRQRQFELDSLRKEFNKLNKEVA 64 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555555553
No 347
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=59.94 E-value=1.4e+02 Score=27.33 Aligned_cols=17 Identities=24% Similarity=0.098 Sum_probs=9.6
Q ss_pred HHHHHHHHHhhhhhccc
Q 024699 206 EIEKLRAELLNTERRAC 222 (264)
Q Consensus 206 EvEKLRaElanae~ra~ 222 (264)
++++.+..+.+..-+|+
T Consensus 194 ~l~~a~~~l~~~~I~AP 210 (334)
T TIGR00998 194 RLKTAWLALKRTVIRAP 210 (334)
T ss_pred HHHHHHHHhhCcEEEcC
Confidence 45555555666666664
No 348
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=59.39 E-value=1.7e+02 Score=28.25 Aligned_cols=18 Identities=28% Similarity=0.580 Sum_probs=13.8
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 024699 246 DNGYGGAWGHYDKHGPPR 263 (264)
Q Consensus 246 ~~~Yg~~wg~yd~~r~~~ 263 (264)
+.+|.+++|.|++....+
T Consensus 255 gGg~tg~Gg~y~~a~v~~ 272 (332)
T TIGR01541 255 GGGYTAGGGKYEPSGVVH 272 (332)
T ss_pred cCCcCCCCccCCCCcccc
Confidence 347789999999876655
No 349
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=59.30 E-value=91 Score=24.95 Aligned_cols=27 Identities=15% Similarity=0.175 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 024699 163 ADIDGIRSELVEARRAFEFEKKANEEQIE 191 (264)
Q Consensus 163 aEie~lrqElqr~Raa~EyEKk~~~e~~E 191 (264)
.|--.|+.|+.+.|+-+ +++..--.++
T Consensus 51 ~EN~rL~ee~rrl~~f~--~~gerE~l~~ 77 (86)
T PF12711_consen 51 MENIRLREELRRLQSFY--VEGEREMLLQ 77 (86)
T ss_pred HHHHHHHHHHHHHHHHH--HhhHHHHHHH
Confidence 44466777777777755 4444443333
No 350
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=58.73 E-value=6.4 Score=38.26 Aligned_cols=122 Identities=16% Similarity=0.243 Sum_probs=27.7
Q ss_pred HHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHH
Q 024699 97 RELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL----IAMRADIDGIRSEL 172 (264)
Q Consensus 97 R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqi----pal~aEie~lrqEl 172 (264)
-.|+++..+||. +.+.|..-+-.+...+-.|.+.-+.|+..+..++-+|.-+..+++++ ..+...|.+|..-+
T Consensus 31 s~I~eRLsaLEs---sv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~l 107 (326)
T PF04582_consen 31 SPIRERLSALES---SVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTL 107 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhh
Confidence 356777778887 66666555555555555555555555555555555555555444432 34455556666666
Q ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 024699 173 VEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRA 221 (264)
Q Consensus 173 qr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElanae~ra 221 (264)
......|.--......+.--+--|.-++-+|+--|--|...+.+.|.++
T Consensus 108 s~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~~ 156 (326)
T PF04582_consen 108 SDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESGS 156 (326)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcCC
Confidence 6666666666666666666666677777777777777777777777665
No 351
>PRK10698 phage shock protein PspA; Provisional
Probab=58.61 E-value=1.4e+02 Score=27.00 Aligned_cols=83 Identities=19% Similarity=0.263 Sum_probs=37.8
Q ss_pred ccchHHHHHHHHhhHHHHHHHh-hhhhHhhhhhHHHHHH-------HHHhhhhhHHhhhhc----hhHHHHHHHHHHHHH
Q 024699 61 IDDNTHLQRELTASKDEIHRLG-QIIPKLRADKEAHTRE-------LFDRGLKLEVELRAS----EPVRAEVVQLRAEVQ 128 (264)
Q Consensus 61 aathvaLrqeLaaaq~Elqrl~-~~~~~l~ae~e~q~R~-------l~ek~~KmEAelra~----e~lk~El~q~raE~q 128 (264)
.++...|.+++..++..+.... .+...|.+-.|-=-|+ .-+++..++.++... +.|+..+.+++..++
T Consensus 51 ~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~ 130 (222)
T PRK10698 51 LAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLS 130 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555544 3334444444444444 444444444443332 233444444444444
Q ss_pred HHHHHHHHHHHHHHH
Q 024699 129 KLNSSRQELTTQIKG 143 (264)
Q Consensus 129 ~L~~~RQeL~~qvq~ 143 (264)
.+-+-+..|.++.+.
T Consensus 131 eak~k~~~L~aR~~~ 145 (222)
T PRK10698 131 ETRARQQALMLRHQA 145 (222)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 352
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=58.38 E-value=49 Score=35.74 Aligned_cols=72 Identities=29% Similarity=0.384 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 131 NSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKL 210 (264)
Q Consensus 131 ~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKL 210 (264)
.+++.=|.+|||.|..|-+-+.++--.|..=+.=+| +.+|.-.|.+.-++..+|+=|+.|.++++|+|.=
T Consensus 381 ~~v~~gl~aq~~al~~era~l~a~w~rv~egrr~v~----------~mv~~grk~~~~~~~e~~ar~~~l~~v~re~eee 450 (828)
T PF04094_consen 381 STVREGLNAQVQALAAERAALDAEWARVDEGRRAVD----------AMVEVGRKAHQAHLAEIQAREETLDSVMRETEEE 450 (828)
T ss_pred hHHhhhhhhHHHHHHHHHHHHHHHHHHHhhccchHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888775544444322222221122 6688999999999999999999999999999976
Q ss_pred HH
Q 024699 211 RA 212 (264)
Q Consensus 211 Ra 212 (264)
|.
T Consensus 451 r~ 452 (828)
T PF04094_consen 451 RQ 452 (828)
T ss_pred HH
Confidence 64
No 353
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=58.23 E-value=83 Score=29.01 Aligned_cols=30 Identities=37% Similarity=0.468 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKG 143 (264)
Q Consensus 114 e~lk~El~q~raE~q~L~~~RQeL~~qvq~ 143 (264)
+.|-.|+.|++.|-|+|...||-|.++-+.
T Consensus 48 ~~L~~e~~~l~~eqQ~l~~er~~l~~er~~ 77 (228)
T PRK06800 48 KSLHKELNQLRQEQQKLERERQQLLADREQ 77 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666555555554443
No 354
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=58.16 E-value=80 Score=25.45 Aligned_cols=49 Identities=27% Similarity=0.454 Sum_probs=29.2
Q ss_pred HHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 100 FDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVN 149 (264)
Q Consensus 100 ~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~ 149 (264)
-.+..++|.+++.. |=++++..++.++-+|.-.-+.|.+++++++.-+.
T Consensus 48 ~~Rl~~lE~~l~~L-Pt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 48 DRRLQALETKLEHL-PTRDDVHDLQLELAELRGELKELSARLQGVSHQLD 96 (106)
T ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 35566666655433 22566777777666666666666666666655443
No 355
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=57.73 E-value=1.6e+02 Score=27.14 Aligned_cols=99 Identities=17% Similarity=0.302 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhh----hhhhhHHHHHHH
Q 024699 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEF----EKKANEEQIEQK 193 (264)
Q Consensus 118 ~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~Ey----EKk~~~e~~Eq~ 193 (264)
.+|.+++..+-++.+....|.-++..+..+..+.+.-. .-+|.+.-+.|=.|.---...+|. .+......-++.
T Consensus 38 ~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A--~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~ 115 (225)
T COG1842 38 SELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKA--ELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQV 115 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444445555444444444333 334444445544444333333333 333455555667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 024699 194 QAMENNLISMAREIEKLRAELLNTE 218 (264)
Q Consensus 194 qaMEknlismarEvEKLRaElanae 218 (264)
..|++++..+-.-|..|++...-..
T Consensus 116 ~~l~~~~~~Le~Ki~e~~~~~~~l~ 140 (225)
T COG1842 116 EKLKKQLAALEQKIAELRAKKEALK 140 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888888888887755443
No 356
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=57.56 E-value=2.5e+02 Score=29.51 Aligned_cols=65 Identities=22% Similarity=0.265 Sum_probs=45.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024699 152 EAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLN 216 (264)
Q Consensus 152 ~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElan 216 (264)
..|++.+-....+|+.+.+-+.-.=.-++-.+.++.+..+-++..++-|-.+-.+.+|++..|..
T Consensus 343 e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~ 407 (570)
T COG4477 343 ETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTS 407 (570)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34555555666666777777777777777777888888877777777777777777666665543
No 357
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=57.56 E-value=2.7e+02 Score=29.92 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHHHHH
Q 024699 158 LIAMRADIDGIRSELVE 174 (264)
Q Consensus 158 ipal~aEie~lrqElqr 174 (264)
+-..+.|++.+-.|+..
T Consensus 579 l~~a~~~~~~~i~~lk~ 595 (782)
T PRK00409 579 IKEAKKEADEIIKELRQ 595 (782)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444455555555543
No 358
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=57.32 E-value=1.9e+02 Score=27.98 Aligned_cols=16 Identities=13% Similarity=0.009 Sum_probs=8.8
Q ss_pred HHHHHHHHhhhhhccc
Q 024699 207 IEKLRAELLNTERRAC 222 (264)
Q Consensus 207 vEKLRaElanae~ra~ 222 (264)
++.-+..|.++.-+|.
T Consensus 206 l~~a~~~L~~t~I~AP 221 (390)
T PRK15136 206 VRNAWLALQRTKIVSP 221 (390)
T ss_pred HHHHHHHHhCCEEECC
Confidence 4444455666666664
No 359
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=57.31 E-value=1.2e+02 Score=25.88 Aligned_cols=83 Identities=19% Similarity=0.108 Sum_probs=46.7
Q ss_pred HhhhhhHHhhhhchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 024699 101 DRGLKLEVELRASEPVRAEVVQLRAEVQ-KLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (264)
Q Consensus 101 ek~~KmEAelra~e~lk~El~q~raE~q-~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 179 (264)
+|-.++..+|...+..+.+...+..+.+ +|..++++-..-++....+-.+...+. +...+.|++ +.+..++..|
T Consensus 50 ~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~--~~~A~~e~~---~~~~~a~~~i 124 (174)
T PRK07352 50 ERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIRAEI--EKQAIEDMA---RLKQTAAADL 124 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH---HHHHHHHHHH
Confidence 4444555556666666666666666553 355555555555555555555444443 233334443 4556788888
Q ss_pred hhhhhhhHH
Q 024699 180 EFEKKANEE 188 (264)
Q Consensus 180 EyEKk~~~e 188 (264)
+.|++.-..
T Consensus 125 ~~e~~~a~~ 133 (174)
T PRK07352 125 SAEQERVIA 133 (174)
T ss_pred HHHHHHHHH
Confidence 888765443
No 360
>COG5293 Predicted ATPase [General function prediction only]
Probab=57.02 E-value=2.5e+02 Score=29.30 Aligned_cols=139 Identities=15% Similarity=0.154 Sum_probs=90.0
Q ss_pred cchHHHHHHHHh-----hHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHH--
Q 024699 62 DDNTHLQRELTA-----SKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSR-- 134 (264)
Q Consensus 62 athvaLrqeLaa-----aq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~R-- 134 (264)
+..+.|=.++.. .++....+-+....+-+++-- =|=+++.++++||..+++-++++-.-++|.-.....+
T Consensus 301 d~i~~~ye~vg~~fpg~Vkk~~e~v~~F~r~~~e~R~~---yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~~Lk~~g~ 377 (591)
T COG5293 301 DEIQVLYEEVGVLFPGQVKKDFEHVIAFNRAITEERHD---YLQEEIAEIEGDLKEVNAELDDLGKRRAEGLAFLKNRGV 377 (591)
T ss_pred HHHHHHHHHhhhcChHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 456666666543 355555555555555544332 3557889999999999999999988888765544433
Q ss_pred ----HHHHHHHHHHHHHH---HHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 024699 135 ----QELTTQIKGLTKDV---NRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISM 203 (264)
Q Consensus 135 ----QeL~~qvq~l~qeL---~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlism 203 (264)
|-|....-.+.-+| ..-..++.+..++..=|-.+++|+-+.-..+--|-.-...+.+...-.=+||+..
T Consensus 378 ~e~y~~l~ee~~~~~~elae~~~rie~l~k~~~~~~~i~~lkhe~l~~~~r~y~e~q~q~~~~~~~~~lF~~~~r~ 453 (591)
T COG5293 378 FEKYQTLCEEIIALRGELAELEYRIEPLRKLHALDQYIGTLKHECLDLEERIYTEVQQQCSLFASIGRLFKEMIRE 453 (591)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333 3344688888899999999999988877666656555555566666666666544
No 361
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=56.89 E-value=1.7e+02 Score=27.23 Aligned_cols=144 Identities=12% Similarity=0.152 Sum_probs=0.0
Q ss_pred hhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHH
Q 024699 50 MHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQK 129 (264)
Q Consensus 50 iqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~ 129 (264)
...+.....++|..|..|.+.|...-.+|..+....-.-+-.....+-...+...++-.-...++--|....+.--|..+
T Consensus 69 ~~~~~~e~e~~a~~H~~la~~L~~~~~~l~~~~~~~~k~rK~~ke~~~~~~~~~~~~~~~~~~~~KaK~~Y~~~c~e~e~ 148 (269)
T cd07673 69 WDVFKTSTEKLANCHLELVRKLQELIKEVQKYGEEQVKSHKKTKEEVAGTLEAVQNIQSITQALQKSKENYNAKCLEQER 148 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 024699 130 LNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREI 207 (264)
Q Consensus 130 L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEv 207 (264)
+ .+...-.++|.|++..+++ -..+-...-+.+...|. +| -+.-....++.|.||.+-|...+++
T Consensus 149 ~--------~~~~~t~k~leK~~~k~~k---a~~~Y~~~v~~l~~~~~--~~-~~~m~~~~~~~Q~~Ee~Ri~~~k~~ 212 (269)
T cd07673 149 L--------KKEGATQREIEKAAVKSKK---ATESYKLYVEKYALAKA--DF-EQKMTETAQKFQDIEETHLIRIKEI 212 (269)
T ss_pred H--------HhcCCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHH
No 362
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=56.41 E-value=93 Score=28.38 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=15.4
Q ss_pred hHHHHHHHHhhHHHHHHHhhhhh
Q 024699 64 NTHLQRELTASKDEIHRLGQIIP 86 (264)
Q Consensus 64 hvaLrqeLaaaq~Elqrl~~~~~ 86 (264)
-|.|+.||+.....|........
T Consensus 98 evrLkrELa~Le~~l~~~~~~~~ 120 (195)
T PF12761_consen 98 EVRLKRELAELEEKLSKVEQAAE 120 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888877777766654443
No 363
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=56.33 E-value=46 Score=31.10 Aligned_cols=52 Identities=27% Similarity=0.489 Sum_probs=0.0
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 024699 111 RASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (264)
Q Consensus 111 ra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 179 (264)
|..+++|.-..+.+... +++.-+|..|.+|.+ +|+.+|+.|++|+..+|..|
T Consensus 201 rNN~A~~kSR~~~k~~~-------~e~~~r~~~leken~----------~lr~~v~~l~~el~~~~~~~ 252 (269)
T KOG3119|consen 201 RNNEAVRKSRDKRKQKE-------DEMAHRVAELEKENE----------ALRTQVEQLKKELATLRRLF 252 (269)
T ss_pred hhhHHHHHhhhhHHHHH-------HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
No 364
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=56.27 E-value=96 Score=24.28 Aligned_cols=60 Identities=20% Similarity=0.412 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 024699 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVE 174 (264)
Q Consensus 115 ~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr 174 (264)
..=.++..+..+-.+|...-++|.++-..+++++..+.........+++++..++.++..
T Consensus 26 ~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~ 85 (108)
T PF02403_consen 26 EDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKE 85 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHH
Confidence 333666666666666666666666666666666666555444445555555555555443
No 365
>PRK15396 murein lipoprotein; Provisional
Probab=56.22 E-value=48 Score=25.96 Aligned_cols=32 Identities=22% Similarity=0.439 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 119 EVVQLRAEVQKLNSSRQELTTQIKGLTKDVNR 150 (264)
Q Consensus 119 El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r 150 (264)
++..+.+++..|...=+.+...++....|-+|
T Consensus 33 qV~~L~~kvdql~~dv~~~~~~~~~a~~eA~r 64 (78)
T PRK15396 33 DVQTLNAKVDQLSNDVNAMRSDVQAAKDDAAR 64 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 366
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=56.07 E-value=1.8e+02 Score=27.49 Aligned_cols=91 Identities=16% Similarity=0.175 Sum_probs=46.9
Q ss_pred HHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhch-hHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 024699 66 HLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASE-PVRAEVVQLRAEVQKL----NSSRQELTTQ 140 (264)
Q Consensus 66 aLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e-~lk~El~q~raE~q~L----~~~RQeL~~q 140 (264)
-|++-..-...-...|...|.+...-.-..+|.|+++--++=.=+-..+ .-+..++++++|++.. ...--.|..+
T Consensus 10 el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~~~l~~ak~eLqe~eek~e~~l~~Lq~q 89 (258)
T PF15397_consen 10 ELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNHKQLQQAKAELQEWEEKEESKLSKLQQQ 89 (258)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3444444455555556666666666666777777777655543222211 1133455555555543 2233344555
Q ss_pred HHHHHHHHHHHHHhhh
Q 024699 141 IKGLTKDVNRLEAENK 156 (264)
Q Consensus 141 vq~l~qeL~r~~ad~q 156 (264)
|+.+...+.+.+.|+.
T Consensus 90 l~~l~akI~k~~~el~ 105 (258)
T PF15397_consen 90 LEQLDAKIQKTQEELN 105 (258)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555443
No 367
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=55.95 E-value=2e+02 Score=27.82 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhc
Q 024699 197 ENNLISMAREIEKLRAELLNTERR 220 (264)
Q Consensus 197 EknlismarEvEKLRaElanae~r 220 (264)
+..+-....++..+++++++++..
T Consensus 226 ~~~~~~~~~~l~~~~~~l~~~~~~ 249 (421)
T TIGR03794 226 EKELETVEARIKEARYEIEELENK 249 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556677777777777554
No 368
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=55.78 E-value=56 Score=32.45 Aligned_cols=81 Identities=17% Similarity=0.070 Sum_probs=39.8
Q ss_pred HHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhh-hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 69 RELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELR-ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (264)
Q Consensus 69 qeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelr-a~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qe 147 (264)
.|+.+.++|..+|..-+.+|++| ..+||+|+. +....|.|+.++ ++.++... +..+.+.
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~e-----------VerLE~e~l~s~V~E~vet~dv--~~d~i~Ki-------mnk~Re~ 91 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIE-----------VERLENEMLRSHVCEDVETNDV--IYDKIVKI-------MNKMREL 91 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHH-----------HHHHHHHhhhhhhhhHHHHHHH--HHHHHHHH-------HHHHhhh
Confidence 45566666666666555555533 334566655 555566666555 33343322 1112121
Q ss_pred HHHHHHhhhhhHHHHHHHHHHH
Q 024699 148 VNRLEAENKQLIAMRADIDGIR 169 (264)
Q Consensus 148 L~r~~ad~qqipal~aEie~lr 169 (264)
..=.+-+...=|.|-|-||+|-
T Consensus 92 vlfq~d~~~ld~~lLARve~Ll 113 (420)
T PF07407_consen 92 VLFQRDDLKLDSVLLARVETLL 113 (420)
T ss_pred hhhccccccccHHHHHHHHHHH
Confidence 1112223344566677777653
No 369
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=55.73 E-value=1.1e+02 Score=27.14 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=28.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHhhhhhHHHH
Q 024699 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIK---------------GLTKDVNRLEAENKQLIAMR 162 (264)
Q Consensus 113 ~e~lk~El~q~raE~q~L~~~RQeL~~qvq---------------~l~qeL~r~~ad~qqipal~ 162 (264)
.+.||.||.++..||+. .||-|.++.. .|+++|.+-.-|+|...+-+
T Consensus 31 ~eeLr~EL~KvEeEI~T---LrqvL~aKer~~~eLKrkLGit~l~elkqnlskg~~~vq~S~aY~ 92 (162)
T PF04201_consen 31 REELRSELAKVEEEIQT---LRQVLAAKERHCAELKRKLGITPLSELKQNLSKGWHDVQDSNAYK 92 (162)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHCCchHHHHHHHHHHHhHhhhchhHHH
Confidence 35688888888888875 4555555433 24555555555555444444
No 370
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=55.68 E-value=3.5e+02 Score=30.57 Aligned_cols=128 Identities=15% Similarity=0.211 Sum_probs=70.2
Q ss_pred cccccccccchHHHHHHHHhhHHHHHHHhhhhhH--hhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHH
Q 024699 54 ISENRHAIDDNTHLQRELTASKDEIHRLGQIIPK--LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLN 131 (264)
Q Consensus 54 l~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~--l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~ 131 (264)
..-|-|++..|+.|+.-++.+.-=.--=++...+ +..+.=...+.++..+--++- ...-+-.++..+.+++..+.
T Consensus 573 ~~~~~r~~~~~~~~~~~i~g~~~~~i~~S~ygs~~v~~~~~~lk~~~f~~~~~~l~~---~~~~~ee~~~~~~~~~~~~~ 649 (1072)
T KOG0979|consen 573 VLQNIRQPNGSVFLKRNIAGGRSKSIKKSAYGSRQVITRNDPLKSRNFFSVSPVLEE---LDNRIEEEIQKLKAEIDIRS 649 (1072)
T ss_pred HHhccccCCCchhHHHHhhcCchhhhhhhccccceeeecCCcchhhhhhccchHHHH---HHHHHHHHHHHHHHHHhhhh
Confidence 3457788888888888777653211111111111 111111334444443333332 22233344555667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 024699 132 SSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKK 184 (264)
Q Consensus 132 ~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk 184 (264)
....+|..+++...++|...+..++.+---+.+++.-...++.--+.||.++.
T Consensus 650 ~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~~~~ 702 (1072)
T KOG0979|consen 650 STLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSELKSYQQRKERIENLVV 702 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777766665555555555555566666666666543
No 371
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=55.43 E-value=1.7e+02 Score=26.82 Aligned_cols=145 Identities=14% Similarity=0.151 Sum_probs=77.6
Q ss_pred hhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHH
Q 024699 50 MHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQK 129 (264)
Q Consensus 50 iqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~ 129 (264)
...++.....+|..|..+-.+|... +..-+..+..+.+.......+-..|+.. |+..+-.|+.+
T Consensus 67 W~~iL~ete~~A~~~~~~ae~l~~~------i~~~l~~l~~~~~~~rK~~~~~~~kl~~----------el~~~~~el~k 130 (237)
T cd07657 67 WKEIMDSTDQLSKLIKQHAEALESG------TLDKLTLLIKDKRKAKKAYQEERQQIDE----------QYKKLTDEVEK 130 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
Confidence 4445566666666666555554431 1222334444555555556666666654 34444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhh-------------------hhHHHH
Q 024699 130 LNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKK-------------------ANEEQI 190 (264)
Q Consensus 130 L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk-------------------~~~e~~ 190 (264)
.-..=+.+...+....+.+.++-.+.. .-++++|..++=++..-..+.-=|+ .=.+++
T Consensus 131 ~Kk~Y~~~~~e~e~Ar~k~e~a~~~~~---~~~~~~eKak~k~~~~~~k~~~akNeY~l~l~~aN~~q~~yY~~~lP~ll 207 (237)
T cd07657 131 LKSEYQKLLEDYKAAKSKFEEAVVKGG---RGGRKLDKARDKYQKACRKLHLCHNDYVLALLEAQEHEEDYRTLLLPGLL 207 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc---cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 444444455555555555555544432 2244555444444333333322222 235788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024699 191 EQKQAMENNLISMAREIEKLRAE 213 (264)
Q Consensus 191 Eq~qaMEknlismarEvEKLRaE 213 (264)
..+|.|+.++|.+.+|+=.-=++
T Consensus 208 ~~lQ~l~E~ri~~~k~~l~~~~~ 230 (237)
T cd07657 208 NSLQSLQEEFITQWKKILQEYLR 230 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999986443333
No 372
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=55.19 E-value=39 Score=29.28 Aligned_cols=38 Identities=13% Similarity=0.250 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 024699 158 LIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAR 205 (264)
Q Consensus 158 ipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismar 205 (264)
|+.|.+++|.-+||++- .+.+.+.++|-.=++|-+++-
T Consensus 96 VtSLea~lEkqqQeLkA----------dhS~lllhvk~~~~DLr~LsC 133 (138)
T PF03954_consen 96 VTSLEAKLEKQQQELKA----------DHSTLLLHVKQFPKDLRSLSC 133 (138)
T ss_pred cccHHHHHHHHHHHHhh----------hHHHHHHHHHHHHHHHhhhhh
Confidence 44444555555555432 445566666666666655543
No 373
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=55.17 E-value=1.6e+02 Score=26.65 Aligned_cols=38 Identities=18% Similarity=0.318 Sum_probs=24.9
Q ss_pred hhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhh
Q 024699 52 RIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLR 89 (264)
Q Consensus 52 rLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ 89 (264)
.++.....+|..|..+-+.|...-+||..+...+...+
T Consensus 69 ~il~~~e~lA~~h~~~a~~L~~~~~eL~~l~~~~e~~R 106 (234)
T cd07652 69 SSLEFHEKLADNGLRFAKALNEMSDELSSLAKTVEKSR 106 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556677888888888888655566665555444444
No 374
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.13 E-value=2.6e+02 Score=28.84 Aligned_cols=44 Identities=23% Similarity=0.225 Sum_probs=26.0
Q ss_pred hhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHH
Q 024699 84 IIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKL 130 (264)
Q Consensus 84 ~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L 130 (264)
.+.....|--.|+-.|+.....-|- -.+.+-+++-|+..|||+-
T Consensus 321 ~~~qs~ed~t~q~~~ll~~~q~sE~---ll~tlq~~iSqaq~~vq~q 364 (542)
T KOG0993|consen 321 TEQQSQEDITVQRAQLLEERQHSED---LLVTLQAEISQAQSEVQKQ 364 (542)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHH
Confidence 3444444555566666666665554 2235667777777777753
No 375
>PRK09343 prefoldin subunit beta; Provisional
Probab=55.12 E-value=1.2e+02 Score=24.99 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=13.3
Q ss_pred HHHhhhhhHHhhhhchhHHHHHHHHHHH
Q 024699 99 LFDRGLKLEVELRASEPVRAEVVQLRAE 126 (264)
Q Consensus 99 l~ek~~KmEAelra~e~lk~El~q~raE 126 (264)
+......+|++++-.+.+..||..+-.|
T Consensus 26 ~~~q~~~le~q~~e~~~~~~EL~~L~~d 53 (121)
T PRK09343 26 LLQQKSQIDLELREINKALEELEKLPDD 53 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 3344444445555555555555544443
No 376
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=54.71 E-value=3.2e+02 Score=29.77 Aligned_cols=52 Identities=21% Similarity=0.321 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 024699 157 QLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIE 208 (264)
Q Consensus 157 qipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvE 208 (264)
+++.+.+|+..|+.-+..+-..|+.||....|+.-.-+.+|-.|-++..+..
T Consensus 667 ~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~ 718 (769)
T PF05911_consen 667 RLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEES 718 (769)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccc
Confidence 4456688888899999999999999999998888888888888888877743
No 377
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=53.83 E-value=2.3e+02 Score=28.03 Aligned_cols=28 Identities=29% Similarity=0.563 Sum_probs=25.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhhhh
Q 024699 154 ENKQLIAMRADIDGIRSELVEARRAFEF 181 (264)
Q Consensus 154 d~qqipal~aEie~lrqElqr~Raa~Ey 181 (264)
++-|||.|++++++|++||.+-+.+|--
T Consensus 249 ~nPqi~~LkarieSlrkql~qe~q~isa 276 (372)
T COG3524 249 ENPQIPGLKARIESLRKQLLQEKQAISA 276 (372)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhcC
Confidence 6789999999999999999998888753
No 378
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=53.42 E-value=41 Score=23.54 Aligned_cols=26 Identities=31% Similarity=0.635 Sum_probs=13.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 024699 147 DVNRLEAENKQLIAMRADIDGIRSELVE 174 (264)
Q Consensus 147 eL~r~~ad~qqipal~aEie~lrqElqr 174 (264)
||.+.+.|+ +..++.||..+++|+.-
T Consensus 4 dle~~KqEI--L~EvrkEl~K~K~EIIe 29 (40)
T PF08776_consen 4 DLERLKQEI--LEEVRKELQKVKEEIIE 29 (40)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 444444444 45556666666666543
No 379
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=53.40 E-value=1e+02 Score=23.62 Aligned_cols=90 Identities=17% Similarity=0.222 Sum_probs=66.1
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhh--hHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 65 THLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLK--LEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIK 142 (264)
Q Consensus 65 vaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~K--mEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq 142 (264)
..|=.||.-.-.+|+.|-....++..+.+..+..++..... +..+ ....+..++.....++..|...+-.|+.++.
T Consensus 11 ~~LP~el~r~l~~irelD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~I~~~~~~~~~l~deKv~lA~~~~ 88 (105)
T PF12998_consen 11 ENLPAELQRNLTLIRELDAKSQDLLEELDQQIQKFIKNHGSPSLSPE--KRRELLKEIQEEYERALELSDEKVALAQQAY 88 (105)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTS--S-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccccCChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777777788888888888888888888888888877 6666 4556667888888888888888888887776
Q ss_pred H-HHHHHHHHHHhhh
Q 024699 143 G-LTKDVNRLEAENK 156 (264)
Q Consensus 143 ~-l~qeL~r~~ad~q 156 (264)
. +.+-+.|+.+|+.
T Consensus 89 d~v~~hi~rLD~dl~ 103 (105)
T PF12998_consen 89 DLVDRHIRRLDQDLK 103 (105)
T ss_dssp HHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHHHH
Confidence 5 5666677766654
No 380
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=53.39 E-value=2e+02 Score=27.06 Aligned_cols=16 Identities=25% Similarity=0.615 Sum_probs=12.0
Q ss_pred CCCCCCCCCC-CCCCCC
Q 024699 226 GSAYGLLNGC-PDMRYP 241 (264)
Q Consensus 226 g~~Yg~~yg~-p~~~~~ 241 (264)
.|-|||||+. |+...+
T Consensus 279 agiyGMNf~~mPel~~~ 295 (322)
T COG0598 279 TGFYGMNFKGMPELDWP 295 (322)
T ss_pred HcccccCCCCCcCCCCc
Confidence 5899999986 665433
No 381
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=53.37 E-value=2.9e+02 Score=28.95 Aligned_cols=84 Identities=19% Similarity=0.178 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhhhhHHhh-----------hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 024699 93 EAHTRELFDRGLKLEVEL-----------RASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAM 161 (264)
Q Consensus 93 e~q~R~l~ek~~KmEAel-----------ra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal 161 (264)
+-.-|+|-+..-|.++-+ -..+-|+.|..-...|++.|.+-+.+|..||.. ..-...++..+
T Consensus 301 ~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~k-------q~Is~e~fe~m 373 (622)
T COG5185 301 REKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRK-------QGISTEQFELM 373 (622)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-------cCCCHHHHHHH
Confidence 345566666555555533 334556666666777777776666666666543 22223333444
Q ss_pred HHHHHHHHHHHHHHhhhhhhhh
Q 024699 162 RADIDGIRSELVEARRAFEFEK 183 (264)
Q Consensus 162 ~aEie~lrqElqr~Raa~EyEK 183 (264)
-+|-+.|-.||.+.-..++.-.
T Consensus 374 n~Ere~L~reL~~i~~~~~~L~ 395 (622)
T COG5185 374 NQEREKLTRELDKINIQSDKLT 395 (622)
T ss_pred HHHHHHHHHHHHHhcchHHHHH
Confidence 4555555555555444444333
No 382
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=53.34 E-value=65 Score=25.80 Aligned_cols=14 Identities=50% Similarity=0.610 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 024699 119 EVVQLRAEVQKLNS 132 (264)
Q Consensus 119 El~q~raE~q~L~~ 132 (264)
++.|+.++|+.|.+
T Consensus 25 kvdqLss~V~~L~~ 38 (85)
T PRK09973 25 KVNQLASNVQTLNA 38 (85)
T ss_pred hHHHHHHHHHHHHH
Confidence 44455555544333
No 383
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=53.32 E-value=1.4e+02 Score=25.42 Aligned_cols=95 Identities=18% Similarity=0.252 Sum_probs=53.9
Q ss_pred HhhhhhHHhhhhchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 024699 101 DRGLKLEVELRASEPVRAEVVQLRAEVQK-LNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (264)
Q Consensus 101 ek~~KmEAelra~e~lk~El~q~raE~q~-L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 179 (264)
+|..++..+|...+..|.|..++..+.++ |..++.+-..-+...+.+-.+...+. +...+.|.+.+ +..++..|
T Consensus 41 ~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A~~~a~~~~~~~--~~~A~~ea~~~---~~~A~~~I 115 (167)
T PRK14475 41 AYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAAAKADARRMEAEA--KEKLEEQIKRR---AEMAERKI 115 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH---HHHHHHHH
Confidence 44556666777777777777777766653 45555555555555555554443333 23334444443 45788888
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 024699 180 EFEKKANEEQIEQKQAMENNLISMARE 206 (264)
Q Consensus 180 EyEKk~~~e~~Eq~qaMEknlismarE 206 (264)
+.|++.-.. .+.+.++.+|-+
T Consensus 116 ~~e~~~a~~------el~~e~~~lAv~ 136 (167)
T PRK14475 116 AQAEAQAAA------DVKAAAVDLAAQ 136 (167)
T ss_pred HHHHHHHHH------HHHHHHHHHHHH
Confidence 888765433 333445555555
No 384
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=53.16 E-value=1e+02 Score=23.60 Aligned_cols=46 Identities=15% Similarity=0.331 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 024699 137 LTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKK 184 (264)
Q Consensus 137 L~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk 184 (264)
|...-..|.++|.+...+. .-.|...++.+.+.+..++.+|+|=..
T Consensus 55 L~~~e~~ll~~l~~~~~~~--~~~l~~q~~~l~~~l~~l~~~~~~~e~ 100 (127)
T smart00502 55 LNKRKKQLLEDLEEQKENK--LKVLEQQLESLTQKQEKLSHAINFTEE 100 (127)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444433 445556667777777777777766543
No 385
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=53.09 E-value=42 Score=34.33 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 116 VRAEVVQLRAEVQKLNSSRQELTTQIK 142 (264)
Q Consensus 116 lk~El~q~raE~q~L~~~RQeL~~qvq 142 (264)
|.++|..++.|++.|...++++..+++
T Consensus 81 LEKqLaaLrqElq~~saq~~dle~KIk 107 (475)
T PRK13729 81 MQKQYEEIRRELDVLNKQRGDDQRRIE 107 (475)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 345555555555555555555554444
No 386
>COG5293 Predicted ATPase [General function prediction only]
Probab=53.08 E-value=2.9e+02 Score=28.86 Aligned_cols=74 Identities=14% Similarity=0.197 Sum_probs=55.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhH
Q 024699 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANE 187 (264)
Q Consensus 113 ~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~ 187 (264)
++=++.|+...++|+.++.+..++|+.+....-. +-+.+.-...+..|..|+=.++.||--++--||.-+|.+.
T Consensus 337 ~~yl~~ei~~i~~dLk~~n~~~~~l~~~rae~l~-~Lk~~g~~e~y~~l~ee~~~~~~elae~~~rie~l~k~~~ 410 (591)
T COG5293 337 HDYLQEEIAEIEGDLKEVNAELDDLGKRRAEGLA-FLKNRGVFEKYQTLCEEIIALRGELAELEYRIEPLRKLHA 410 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCcHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHH
Confidence 3678899999999999999998888887766432 3345555666777777888888888888877777777654
No 387
>PRK11546 zraP zinc resistance protein; Provisional
Probab=52.97 E-value=52 Score=28.53 Aligned_cols=51 Identities=14% Similarity=0.218 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---HHHHHH-HHHHHHHHHHHhhhh
Q 024699 129 KLNSSRQELTTQIKGLTKDVNRLEAENKQL---IAMRAD-IDGIRSELVEARRAF 179 (264)
Q Consensus 129 ~L~~~RQeL~~qvq~l~qeL~r~~ad~qqi---pal~aE-ie~lrqElqr~Raa~ 179 (264)
++....++..++...|.++|.--++|++.+ +.-..+ |..+.+||..+|..+
T Consensus 51 ~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL 105 (143)
T PRK11546 51 AWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSL 105 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 455566777777777777777666666544 222233 788888888888744
No 388
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=52.84 E-value=3e+02 Score=28.93 Aligned_cols=45 Identities=16% Similarity=0.145 Sum_probs=29.2
Q ss_pred HHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhh
Q 024699 66 HLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVEL 110 (264)
Q Consensus 66 aLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAel 110 (264)
.++|.+...++||.++.........|...+.+.+-+....+++.+
T Consensus 343 ~~~q~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l 387 (656)
T PRK06975 343 ALNRKVDRLDQELVQRQQANDAQTAELRVKTEQAQASVHQLDSQF 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777788877777776666666555555555555555533
No 389
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=52.78 E-value=1.5e+02 Score=32.46 Aligned_cols=49 Identities=22% Similarity=0.278 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 024699 129 KLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (264)
Q Consensus 129 ~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~E 180 (264)
.|.+.--.|..|++...+.+.-++.-+ ..|...||+.+.|-++.+..|.
T Consensus 431 sLqSlN~~Lq~ql~es~k~~e~lq~kn---eellk~~e~q~~Enk~~~~~~~ 479 (861)
T PF15254_consen 431 SLQSLNMSLQNQLQESLKSQELLQSKN---EELLKVIENQKEENKRLRKMFQ 479 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555444444444332 4566778999999999998875
No 390
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=52.71 E-value=1.7e+02 Score=26.12 Aligned_cols=18 Identities=11% Similarity=0.309 Sum_probs=7.3
Q ss_pred hHHHHHHHHhhHHHHHHH
Q 024699 64 NTHLQRELTASKDEIHRL 81 (264)
Q Consensus 64 hvaLrqeLaaaq~Elqrl 81 (264)
+..|.+++..++..+..+
T Consensus 54 ~k~~e~~~~~~~~~~~~~ 71 (219)
T TIGR02977 54 KKELERRVSRLEAQVADW 71 (219)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444333
No 391
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=52.61 E-value=2e+02 Score=26.80 Aligned_cols=120 Identities=13% Similarity=0.178 Sum_probs=0.0
Q ss_pred hhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHH
Q 024699 50 MHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQK 129 (264)
Q Consensus 50 iqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~ 129 (264)
++.++..-.-+..+-..+.+.|...+.++.....-...++.+.+...-..-.....|+...++.+.-...|. ++
T Consensus 178 L~~fl~~~~~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~------ek 251 (297)
T PF02841_consen 178 LQEFLQSKESMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLK------EK 251 (297)
T ss_dssp HHHHHHHCHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Q 024699 130 LNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEAR 176 (264)
Q Consensus 130 L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~R 176 (264)
|...++.+..+.+.+-+.-.+.+.++- .-....+++.|++||+.+.
T Consensus 252 me~e~~~~~~e~e~~l~~k~~eq~~~l-~e~~~~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 252 MEEEREQLLQEQERLLEQKLQEQEELL-KEGFQEEAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcC
No 392
>KOG1981 consensus SOK1 kinase belonging to the STE20/SPS1/GC kinase family [Signal transduction mechanisms]
Probab=52.46 E-value=67 Score=33.20 Aligned_cols=62 Identities=26% Similarity=0.279 Sum_probs=38.6
Q ss_pred HHHhhhhhHHHHHHH-----HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024699 151 LEAENKQLIAMRADI-----DGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNT 217 (264)
Q Consensus 151 ~~ad~qqipal~aEi-----e~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElana 217 (264)
.+.=.|+|.-||-|| --||-.|+ =+.+|||||.+.+.+.|-- .+|-.-.+=+.+.+.|+...
T Consensus 213 ~R~Ilq~l~lMK~DiaN~~I~~lrp~L~--~~sveyEkk~Fqk~l~~~~---~~l~~t~~WL~~~~~e~~~~ 279 (513)
T KOG1981|consen 213 FRGILQLLELMKLDIANYQIRILRPALQ--ENSVEYEKKKFQKLLGQAP---VSLPFTRQWLDKARSELETE 279 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH--HhhHHHHHHHHHHHHhhCC---CCCcHHHHHHHHHhcccccc
Confidence 333444455555544 45666666 5789999999999999411 11222223388888888744
No 393
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=52.37 E-value=1.8e+02 Score=26.69 Aligned_cols=97 Identities=19% Similarity=0.211 Sum_probs=54.0
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhh-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 65 THLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRA-SEPVRAEVVQLRAEVQKLNSSRQELTTQIKG 143 (264)
Q Consensus 65 vaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra-~e~lk~El~q~raE~q~L~~~RQeL~~qvq~ 143 (264)
-+|++++.+.+.........+..++ ..--.+-.+..+++..... .-.++....-+.+++.+++..-+.++..|..
T Consensus 71 e~Le~el~~l~~~~~~~~~~~~~lq----~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~k~~~~l~~l~~~v~~ 146 (256)
T PF14932_consen 71 EALEEELEALQEYKELYEQLRNKLQ----QLDSSLSQELSELEGKEEEAQKKLKKAQKELSAECSKLNNELNQLLGEVSK 146 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555333333333333333 2222344455666653322 2334444444556777888888888888888
Q ss_pred HHHHHHHHHHh-hhhhHHHHHHH
Q 024699 144 LTKDVNRLEAE-NKQLIAMRADI 165 (264)
Q Consensus 144 l~qeL~r~~ad-~qqipal~aEi 165 (264)
+..++...... -+..|.+-.-+
T Consensus 147 l~~~~~~~~~~~~~~~~~flsq~ 169 (256)
T PF14932_consen 147 LASELAHAHSGQQQNPPVFLSQM 169 (256)
T ss_pred HHHHHHHhcccccCCCCchhhhC
Confidence 88888886664 45566665554
No 394
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=52.36 E-value=2.9e+02 Score=28.71 Aligned_cols=20 Identities=25% Similarity=0.157 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 024699 162 RADIDGIRSELVEARRAFEF 181 (264)
Q Consensus 162 ~aEie~lrqElqr~Raa~Ey 181 (264)
..|.+.+...+......++.
T Consensus 566 ~ee~~~l~~~l~~~~~wL~~ 585 (653)
T PTZ00009 566 DSDKATIEKAIDEALEWLEK 585 (653)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 35667777777777777763
No 395
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=52.07 E-value=70 Score=28.59 Aligned_cols=56 Identities=23% Similarity=0.290 Sum_probs=25.3
Q ss_pred HHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHH
Q 024699 67 LQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRA 125 (264)
Q Consensus 67 LrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~ra 125 (264)
++|||..+ ..+|.+.....+.|-+.+|..|-.++.+||.=.+....||.....+..
T Consensus 103 VqqeL~~t---f~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~ 158 (171)
T PF04799_consen 103 VQQELSST---FARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLES 158 (171)
T ss_dssp -------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455444 344555556666555556665555555555544444444444444443
No 396
>PLN02678 seryl-tRNA synthetase
Probab=52.02 E-value=1.3e+02 Score=30.49 Aligned_cols=26 Identities=15% Similarity=0.346 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024699 190 IEQKQAMENNLISMAREIEKLRAELL 215 (264)
Q Consensus 190 ~Eq~qaMEknlismarEvEKLRaEla 215 (264)
.++++.+.+.+..+-.++.++..+|.
T Consensus 77 ~~~~~~Lk~ei~~le~~~~~~~~~l~ 102 (448)
T PLN02678 77 IAETKELKKEITEKEAEVQEAKAALD 102 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334344444444444433
No 397
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=51.94 E-value=49 Score=29.01 Aligned_cols=53 Identities=23% Similarity=0.453 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhHHHHHHHHHHHHHHH
Q 024699 121 VQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEA----ENKQLIAMRADIDGIRSELV 173 (264)
Q Consensus 121 ~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~a----d~qqipal~aEie~lrqElq 173 (264)
..+..-+..|..++..|...+..|+.+...+++ +...||.|+.+|+.++.+|.
T Consensus 124 ~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I~ 180 (184)
T PF05791_consen 124 DKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEIK 180 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
No 398
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=51.78 E-value=3.2e+02 Score=29.00 Aligned_cols=134 Identities=16% Similarity=0.152 Sum_probs=59.5
Q ss_pred HHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 68 QRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (264)
Q Consensus 68 rqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qe 147 (264)
.+=|..++..++.+-..-..+..|.-.-.-.|...+..+|.. +......+...+.-|+=.|.+.++-|..+++.|.+-
T Consensus 303 ~~Llqe~~a~v~q~~~e~~~l~~eaq~l~~~L~~~~~e~~~~--~~~~s~~~al~~ele~~~l~A~l~~L~se~q~L~~~ 380 (632)
T PF14817_consen 303 HQLLQEQWAHVQQFLAEEDALNKEAQALSQRLQRLLEEIERR--LSGSSEREALALELEVAGLKASLNALRSECQRLKEA 380 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555554444444443333333333333333332 222222222233334444444444455444444433
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024699 148 VNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNT 217 (264)
Q Consensus 148 L~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElana 217 (264)
...-+-.. .++..-.|+|++.| ..-.+.-+|.++..|+=-+.+..+++..+|+-+.
T Consensus 381 ~~~r~e~~-------~~Lq~K~q~I~~fr-------qlv~e~QeqIr~LiK~Nsaakt~L~q~~~E~~~~ 436 (632)
T PF14817_consen 381 AAERQEAL-------RSLQAKWQRILDFR-------QLVSEKQEQIRALIKGNSAAKTQLEQSPAEAQEF 436 (632)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhHHHHHHHHhChHHHHHH
Confidence 33222222 23333333333322 3345566677777776666666677776665544
No 399
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.65 E-value=3.3e+02 Score=29.13 Aligned_cols=105 Identities=18% Similarity=0.220 Sum_probs=56.7
Q ss_pred HHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 024699 99 LFDRGLKLEVELRASEPVRAEVVQLRAEVQKLN-----SSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELV 173 (264)
Q Consensus 99 l~ek~~KmEAelra~e~lk~El~q~raE~q~L~-----~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElq 173 (264)
|-.+...||++ .+..|.|+.|..--+-+.- +.+..++.+---|..--+|-..=+++|-.|..|+..+|+||-
T Consensus 48 Lkqq~eEleae---yd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~ 124 (772)
T KOG0999|consen 48 LKQQLEELEAE---YDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELT 124 (772)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666663 3455566555443211111 112222222222333344555567777777777777888877
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 024699 174 EARRAFEFEKKANEEQIEQKQAMENNLISMARE 206 (264)
Q Consensus 174 r~Raa~EyEKk~~~e~~Eq~qaMEknlismarE 206 (264)
..++.-|---+.+.++-+-..+.|-.-+.|-.|
T Consensus 125 ~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~e 157 (772)
T KOG0999|consen 125 NVQEENERLEKVHSDLKESNAAVEDQRRRLRDE 157 (772)
T ss_pred HHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 777777666666666666665555554444443
No 400
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=51.42 E-value=1.7e+02 Score=25.74 Aligned_cols=139 Identities=17% Similarity=0.224 Sum_probs=78.5
Q ss_pred hhhHHHHHHHHHHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhh---------hHHHHHHHHHhhhhhH
Q 024699 37 MTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRAD---------KEAHTRELFDRGLKLE 107 (264)
Q Consensus 37 ~~LEe~l~~Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae---------~e~q~R~l~ek~~KmE 107 (264)
..++.++..+...+.+|..+-.++..++.+|-.--...-..+..+-.-+..-... .-..+-.+......|.
T Consensus 5 ~~~~~~f~~~e~~~~kL~k~~k~y~~a~~~l~~~~~~~~~~~~~ly~p~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~l~ 84 (216)
T cd07599 5 EELEKDFKSLEKSLKKLIEQSKAFRDSWRSILTHQIAFAKEFAELYDPIVGPKESVGSHPAPESTLARLSRYVKALEELK 84 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCcCcCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999888665544433333333332211111100 0011111222222222
Q ss_pred Hhh---------hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-------hhhhhHHHHHHHHHHHH
Q 024699 108 VEL---------RASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNR-LEA-------ENKQLIAMRADIDGIRS 170 (264)
Q Consensus 108 Ael---------ra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r-~~a-------d~qqipal~aEie~lrq 170 (264)
.++ +...|+ .++...-.+++++..-|..-..+...+...+.+ ++. |.++++....+++..+.
T Consensus 85 ~~~~~~l~~i~~~V~~P~-~~~~~~~~~i~k~IkKR~~k~lDyd~~~~k~~k~~~~k~~~~~kd~~kl~kae~~l~~a~~ 163 (216)
T cd07599 85 KELLEELEFFEERVILPA-KELKKYIKKIRKTIKKRDHKKLDYDKLQNKLNKLLQKKKELSLKDEKQLAKLERKLEEAKE 163 (216)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHH
Confidence 211 234566 677777888899999998888888888888877 332 34444444444444444
Q ss_pred HHHHHh
Q 024699 171 ELVEAR 176 (264)
Q Consensus 171 Elqr~R 176 (264)
++..+.
T Consensus 164 ~y~~lN 169 (216)
T cd07599 164 EYEALN 169 (216)
T ss_pred HHHHHH
Confidence 444333
No 401
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=51.27 E-value=1.1e+02 Score=23.35 Aligned_cols=22 Identities=18% Similarity=0.460 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024699 193 KQAMENNLISMAREIEKLRAEL 214 (264)
Q Consensus 193 ~qaMEknlismarEvEKLRaEl 214 (264)
...+++++-.+..+++++.+.|
T Consensus 78 i~~l~~~~~~l~~~l~~~~~~l 99 (106)
T PF01920_consen 78 IKKLEKQLKYLEKKLKELKKKL 99 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 402
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=51.21 E-value=2.8e+02 Score=28.08 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 024699 166 DGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISM 203 (264)
Q Consensus 166 e~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlism 203 (264)
+.|++||.+...++ +.+...+..+|...|++.+...
T Consensus 329 ~~L~~eL~~~~~~~--~~~l~~~l~~~~~e~~~~~~~~ 364 (582)
T PF09731_consen 329 EELRQELKRQEEAH--EEHLKNELREQAIELQREFEKE 364 (582)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555443 3445555566666665555443
No 403
>PLN02320 seryl-tRNA synthetase
Probab=51.10 E-value=1.1e+02 Score=31.44 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 118 AEVVQLRAEVQKLNSSRQELTTQI 141 (264)
Q Consensus 118 ~El~q~raE~q~L~~~RQeL~~qv 141 (264)
.+..++..++..|.+.|..++.++
T Consensus 100 ~~~r~~~~~~~~lr~ern~~sk~i 123 (502)
T PLN02320 100 ENMLALQKEVERLRAERNAVANKM 123 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555554
No 404
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.03 E-value=95 Score=30.80 Aligned_cols=63 Identities=19% Similarity=0.170 Sum_probs=45.1
Q ss_pred HHHHHHHhhhhhHHhhh-hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024699 95 HTRELFDRGLKLEVELR-ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ 157 (264)
Q Consensus 95 q~R~l~ek~~KmEAelr-a~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qq 157 (264)
.+++-+++..++-++|+ ..|.|+.-...+.++++.|....++|..++..|+....-+..+...
T Consensus 222 r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n 285 (365)
T KOG2391|consen 222 RREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAEN 285 (365)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 34444555555555554 4477888888888888888888888888888888887776666554
No 405
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=50.79 E-value=1.1e+02 Score=23.29 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHH
Q 024699 163 ADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMEN 198 (264)
Q Consensus 163 aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEk 198 (264)
+|-..|..=..-+|+-|| ..+.+.++||.
T Consensus 35 ~ER~~L~ekne~Ar~rvE-------amI~RLk~leq 63 (65)
T TIGR02449 35 EERAQLLEKNEQARQKVE-------AMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHhhhhhcc
Confidence 333444444444444443 35556666654
No 406
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=50.66 E-value=1.3e+02 Score=24.30 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=11.9
Q ss_pred chHHHHHHHHhhHHHHHHHhhhhhHhh
Q 024699 63 DNTHLQRELTASKDEIHRLGQIIPKLR 89 (264)
Q Consensus 63 thvaLrqeLaaaq~Elqrl~~~~~~l~ 89 (264)
.|.+|..++..-+..+..+......|.
T Consensus 41 ~~~~~~~e~~~~~~~~~~l~~~~~~L~ 67 (213)
T cd00176 41 KHEALEAELAAHEERVEALNELGEQLI 67 (213)
T ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 344444444444444444444433333
No 407
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=50.63 E-value=1.9e+02 Score=25.91 Aligned_cols=95 Identities=15% Similarity=0.191 Sum_probs=48.7
Q ss_pred HhhhhhHHhhhhchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 024699 101 DRGLKLEVELRASEPVRAEVVQLRAEVQK-LNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (264)
Q Consensus 101 ek~~KmEAelra~e~lk~El~q~raE~q~-L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 179 (264)
+|-.+++.++...+..+.|..+...+.++ |..++.+-..-+.....+-.+...+. +-..+. ...+.+..+++.|
T Consensus 79 ~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i--~~~A~~---eae~ii~~A~~~I 153 (205)
T PRK06231 79 KRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEALQLKSEL--EKEANR---QANLIIFQARQEI 153 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH---HHHHHHHHHHHHH
Confidence 34444555555555555555555555432 33444444444444444444333333 112223 3345677788888
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 024699 180 EFEKKANEEQIEQKQAMENNLISMARE 206 (264)
Q Consensus 180 EyEKk~~~e~~Eq~qaMEknlismarE 206 (264)
+.|+..-.. .+.+.++.+|-+
T Consensus 154 e~Ek~~a~~------~Lk~ei~~lAv~ 174 (205)
T PRK06231 154 EKERRELKE------QLQKESVELAML 174 (205)
T ss_pred HHHHHHHHH------HHHHHHHHHHHH
Confidence 888875433 334456666665
No 408
>PRK10698 phage shock protein PspA; Provisional
Probab=50.58 E-value=2e+02 Score=26.14 Aligned_cols=55 Identities=13% Similarity=0.273 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 024699 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSE 171 (264)
Q Consensus 115 ~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqE 171 (264)
-|+.++..++..+-+..+....+..++..+.....+...-. .-+|.+.-|.|=.+
T Consensus 35 em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA--~~Al~~G~EdLAr~ 89 (222)
T PRK10698 35 EMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKA--ELALRKEKEDLARA 89 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCCCHHHHHH
Confidence 34455555555555555555555555555555544443333 33444444444333
No 409
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=50.39 E-value=1.7e+02 Score=27.26 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Q 024699 163 ADIDGIRSELVEARRAFEFEKKANEEQIEQKQA 195 (264)
Q Consensus 163 aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qa 195 (264)
.|+-.+.++++.+|+.++--|+-|.+++|..+=
T Consensus 100 ~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRy 132 (248)
T PF08172_consen 100 EELRKQQQTISSLRREVESLRADNVKLYEKIRY 132 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444445555566777766443
No 410
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=50.18 E-value=3.1e+02 Score=28.31 Aligned_cols=14 Identities=50% Similarity=0.684 Sum_probs=8.8
Q ss_pred hhhhhhhhHHHHHH
Q 024699 179 FEFEKKANEEQIEQ 192 (264)
Q Consensus 179 ~EyEKk~~~e~~Eq 192 (264)
|..||++-.|+.|-
T Consensus 365 fq~ekeatqELiee 378 (502)
T KOG0982|consen 365 FQEEKEATQELIEE 378 (502)
T ss_pred HHHhhHHHHHHHHH
Confidence 66666666666655
No 411
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=50.08 E-value=35 Score=25.16 Aligned_cols=37 Identities=8% Similarity=0.171 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 024699 139 TQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEA 175 (264)
Q Consensus 139 ~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~ 175 (264)
+++..|..=+..+..-+.+-+.+.+.++.|+.||-++
T Consensus 14 GDLa~MK~l~~~aeq~L~~~~~i~~al~~Lk~EIakl 50 (53)
T PF08898_consen 14 GDLAQMKALAAQAEQQLAEAGDIAAALEKLKAEIAKL 50 (53)
T ss_pred CcHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 3444555555555566666677777777777777664
No 412
>KOG2815 consensus Mitochondrial/choloroplast ribosomal protein S15 [Translation, ribosomal structure and biogenesis]
Probab=49.94 E-value=59 Score=30.79 Aligned_cols=94 Identities=22% Similarity=0.305 Sum_probs=71.4
Q ss_pred HHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 024699 94 AHTRELFDRGLKLEVELRASEPVRAEVVQLRAE-VQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSEL 172 (264)
Q Consensus 94 ~q~R~l~ek~~KmEAelra~e~lk~El~q~raE-~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqEl 172 (264)
.--|+.++++.+++- +-+.+.++..|..++.+ -+.....+-....|+..++-+..++..-..-=-.+.+...++++++
T Consensus 143 ~~kr~~~lril~~~n-~ss~e~~k~~lk~~~~e~~~~~e~dtgs~~vQ~~~~t~~i~~~~r~~~~Hkkd~~~~~~l~~~~ 221 (256)
T KOG2815|consen 143 IDKREKILRILRRRN-LSSFEKIKIKLKLVRKEPFQRFESDTGSAEVQAAFPTVEIRKLSRHEELHKKDQASVRGLRQEV 221 (256)
T ss_pred ccHHHHHHHHhhhhc-cccHHHHHHHHHHhccCCcccccccccchhHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444777888888763 45678999999999998 6766666777777888877777776663333445668889999999
Q ss_pred HHHhhhhhhhhhhhHH
Q 024699 173 VEARRAFEFEKKANEE 188 (264)
Q Consensus 173 qr~Raa~EyEKk~~~e 188 (264)
|.-+.++.|+.+.+-+
T Consensus 222 qkR~r~Lkyl~~~~~~ 237 (256)
T KOG2815|consen 222 QKRQRALKYLARANRQ 237 (256)
T ss_pred HHHHHHHHHHHHhCCc
Confidence 9999999999887643
No 413
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=49.83 E-value=3.6e+02 Score=29.01 Aligned_cols=7 Identities=29% Similarity=0.662 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 024699 205 REIEKLR 211 (264)
Q Consensus 205 rEvEKLR 211 (264)
+++.+++
T Consensus 603 ~~~~~~~ 609 (771)
T TIGR01069 603 EDLVKLK 609 (771)
T ss_pred HHHHHHH
Confidence 3344443
No 414
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=49.65 E-value=98 Score=25.36 Aligned_cols=48 Identities=17% Similarity=0.184 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhh
Q 024699 133 SRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEK 183 (264)
Q Consensus 133 ~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEK 183 (264)
.=.+|..++..|.+++..++..+ -.|..|-..|+-|.+++|.-+....
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~---~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQL---QELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444445555444444332 3344555666666666666555433
No 415
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=49.65 E-value=1.7e+02 Score=25.24 Aligned_cols=94 Identities=16% Similarity=0.211 Sum_probs=42.4
Q ss_pred hhhhhHHhhhhchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 024699 102 RGLKLEVELRASEPVRAEVVQLRAEVQ-KLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (264)
Q Consensus 102 k~~KmEAelra~e~lk~El~q~raE~q-~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~E 180 (264)
|..++..++...+..+.|......+.+ +|..+|.+-..-+....++-.+...+. +-..+. ...+.+..++..|+
T Consensus 59 R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~--~~~a~~---ea~~~~~~A~~~I~ 133 (184)
T PRK13455 59 RAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAAAKDEAQAAAEQA--KADLEA---SIARRLAAAEDQIA 133 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH---HHHHHHHHHHHHHH
Confidence 334444444455555555554444443 233333333333333333322221111 111112 24455677788888
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH
Q 024699 181 FEKKANEEQIEQKQAMENNLISMARE 206 (264)
Q Consensus 181 yEKk~~~e~~Eq~qaMEknlismarE 206 (264)
.||..-... ..+..+.+|-+
T Consensus 134 ~ek~~a~~~------l~~~i~~lA~~ 153 (184)
T PRK13455 134 SAEAAAVKA------VRDRAVSVAVA 153 (184)
T ss_pred HHHHHHHHH------HHHHHHHHHHH
Confidence 887754433 33445555555
No 416
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=49.20 E-value=1.3e+02 Score=26.36 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024699 191 EQKQAMENNLISMAREIEKL 210 (264)
Q Consensus 191 Eq~qaMEknlismarEvEKL 210 (264)
+...+-=+.|++.|+=|-|-
T Consensus 77 ~~~~v~~~eLL~YA~rISk~ 96 (188)
T PF10018_consen 77 EKRPVDYEELLSYAHRISKF 96 (188)
T ss_pred ccCCCCHHHHHHHHHHHHHh
Confidence 33333456688888877654
No 417
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=49.10 E-value=1.7e+02 Score=25.06 Aligned_cols=80 Identities=19% Similarity=0.315 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHhhhh----hHHHHHHHHHHHHHHHHHhhhhhhhhhh--------hHHHHHHHHH
Q 024699 130 LNSSRQELTTQI--KGLTKDVNRLEAENKQ----LIAMRADIDGIRSELVEARRAFEFEKKA--------NEEQIEQKQA 195 (264)
Q Consensus 130 L~~~RQeL~~qv--q~l~qeL~r~~ad~qq----ipal~aEie~lrqElqr~Raa~EyEKk~--------~~e~~Eq~qa 195 (264)
....|-+|..+| +...+++.....=... |-.++.+++.+..||+.+|..|=-=+-. =.+..||=+-
T Consensus 28 v~~~R~dL~~KV~~~~~~~~lk~~~ki~~~Qr~~l~~l~~~l~~l~~eL~~Lr~~~l~rRPLtk~dVeeLV~~IseQPK~ 107 (126)
T PF07028_consen 28 VTCYRSDLGSKVSQKKLLEELKNLSKIQESQRSELKELKQELDVLSKELQALRKEYLERRPLTKEDVEELVLRISEQPKF 107 (126)
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcHH
Confidence 345677777777 2233333333332222 5566677777777777777766433322 3445667777
Q ss_pred HHHHHHHHHHHHHH
Q 024699 196 MENNLISMAREIEK 209 (264)
Q Consensus 196 MEknlismarEvEK 209 (264)
+||--..+..|+.|
T Consensus 108 IEkQte~LteEL~k 121 (126)
T PF07028_consen 108 IEKQTEALTEELTK 121 (126)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777666666554
No 418
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=49.08 E-value=1.5e+02 Score=29.31 Aligned_cols=32 Identities=25% Similarity=0.482 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVN 149 (264)
Q Consensus 118 ~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~ 149 (264)
.++..+..+..+|...-+.|..+...+++++.
T Consensus 28 d~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~ 59 (425)
T PRK05431 28 DELLELDEERRELQTELEELQAERNALSKEIG 59 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 419
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=48.88 E-value=1.7e+02 Score=24.86 Aligned_cols=27 Identities=0% Similarity=0.235 Sum_probs=16.4
Q ss_pred chHHHHHHHHhhHHHHHHHhhhhhHhh
Q 024699 63 DNTHLQRELTASKDEIHRLGQIIPKLR 89 (264)
Q Consensus 63 thvaLrqeLaaaq~Elqrl~~~~~~l~ 89 (264)
|.-.|..-.+..-.-|..++..+.+.|
T Consensus 37 Trr~m~~A~~~v~kql~~vs~~l~~tK 63 (126)
T PF07889_consen 37 TRRSMSDAVASVSKQLEQVSESLSSTK 63 (126)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555566666676676666
No 420
>PF05794 Tcp11: T-complex protein 11; InterPro: IPR008862 This family consists of several eukaryotic T-complex protein 11 (Tcp11) related sequences. Tcp11 is only expressed in fertile adult mammalian testes and is thought to be important in sperm function and fertility. The family also contains the Saccharomyces cerevisiae Sok1 protein which is known to suppress cyclic AMP-dependent protein kinase mutants [].
Probab=48.74 E-value=2.6e+02 Score=27.07 Aligned_cols=52 Identities=17% Similarity=0.339 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q 024699 128 QKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQK 193 (264)
Q Consensus 128 q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~ 193 (264)
..++..=..+-..++.|.-|++. --|..+|.-|+ ..+++||++.+.+.++..
T Consensus 137 ~~~V~~lr~if~~le~MklD~AN------------~~i~~~rp~L~--~~sv~yEr~~F~~~l~~~ 188 (441)
T PF05794_consen 137 TDIVDGLRFIFEILELMKLDMAN------------FQIRSLRPQLI--EHSVEYERKKFQERLEKG 188 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHH--HHHHHHHHHHHHHHHHhC
Confidence 44554444555555555555442 44566776664 456999999999999443
No 421
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=48.70 E-value=1.8e+02 Score=25.29 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=24.3
Q ss_pred hhhhhHHhhhhchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 024699 102 RGLKLEVELRASEPVRAEVVQLRAEVQK-LNSSRQELTTQIKGLTKDVNRL 151 (264)
Q Consensus 102 k~~KmEAelra~e~lk~El~q~raE~q~-L~~~RQeL~~qvq~l~qeL~r~ 151 (264)
|..+++.++...+..+.+..++..+.+. |..+|+|-..-++...++..+.
T Consensus 63 R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~ 113 (181)
T PRK13454 63 RQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRAEIQAE 113 (181)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555442 4444444444444444444433
No 422
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=48.66 E-value=1.1e+02 Score=24.49 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 024699 161 MRADIDGIRSELVEARRA 178 (264)
Q Consensus 161 l~aEie~lrqElqr~Raa 178 (264)
+++.++..+.|=.|+-.-
T Consensus 50 a~aaa~aAk~EA~RAN~R 67 (85)
T PRK09973 50 LRPQIYAAKSEANRANTR 67 (85)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344444445554444433
No 423
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=48.64 E-value=1.2e+02 Score=31.18 Aligned_cols=132 Identities=14% Similarity=0.136 Sum_probs=79.7
Q ss_pred CCCCCchhhHHHHHHHHHHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhh
Q 024699 31 PMHFHPMTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVEL 110 (264)
Q Consensus 31 p~pp~P~~LEe~l~~Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAel 110 (264)
|-||+-.-|=.-|..-..|-..++.+| ..|||.|.-+.|||-+-.-... |-.
T Consensus 61 pk~~satSIPalL~~lQdEWDavML~~-------F~LRqqL~ttrQELShaLYqhD---------------------AAc 112 (506)
T KOG0289|consen 61 PKPPSATSIPALLKTLQDEWDAVMLES-------FTLRQQLQTTRQELSHALYQHD---------------------AAC 112 (506)
T ss_pred CCCCCccchHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHHHhhh---------------------HHH
Confidence 445554444455555566777777665 7899999999999987654433 334
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHhhhh-
Q 024699 111 RASEPVRAEVVQLRAEVQKLNSSRQELTTQ--------IKGLTKDVNRLEAENK--QLIAMRADIDGIRSELVEARRAF- 179 (264)
Q Consensus 111 ra~e~lk~El~q~raE~q~L~~~RQeL~~q--------vq~l~qeL~r~~ad~q--qipal~aEie~lrqElqr~Raa~- 179 (264)
|...-|..|+..+|-.+-+| .+.-.+- .+.=....+.-..+.| --|++++.++.--|+|.+-|..+
T Consensus 113 rViaRL~kE~~eareaLa~~---~~qa~a~~peav~~~~~~s~~~va~ge~~d~~g~s~~i~~~l~~~aq~ls~~rKkrg 189 (506)
T KOG0289|consen 113 RVIARLTKERDEAREALAKL---SPQAGAIVPEAVPSLAQSSVVGVAAGESEDQPGLSPEIIQKLEDKAQVLSQERKKRG 189 (506)
T ss_pred HHHHHHHHHHHHHHHHHhhc---CcccccccccccccccccchhhhhcCCccccccCCHHHHHHHHHHHHHHHHHhhhcc
Confidence 45555666666555543332 2222222 1222233445555666 56788888888888888877776
Q ss_pred --hhhhhhhHHHHHHH
Q 024699 180 --EFEKKANEEQIEQK 193 (264)
Q Consensus 180 --EyEKk~~~e~~Eq~ 193 (264)
.-||-++.|.+.++
T Consensus 190 ~k~p~~la~~d~~~~~ 205 (506)
T KOG0289|consen 190 KKLPEKLATTDELSCL 205 (506)
T ss_pred ccCCcccccHHHHHHH
Confidence 44666666666553
No 424
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=48.59 E-value=1e+02 Score=30.34 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 024699 197 ENNLISMAREIEKLRAELLNT 217 (264)
Q Consensus 197 EknlismarEvEKLRaElana 217 (264)
.+.+-.+..++.+|..++.+.
T Consensus 388 ~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 388 KEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 333333444444444444443
No 425
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=48.31 E-value=1.7e+02 Score=24.83 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=8.0
Q ss_pred HHHHHhhhhhhhhhhhH
Q 024699 171 ELVEARRAFEFEKKANE 187 (264)
Q Consensus 171 Elqr~Raa~EyEKk~~~ 187 (264)
-+..+|.-|+.|+..+.
T Consensus 57 ~~~~i~~q~~~e~~~r~ 73 (131)
T PF11068_consen 57 QIQSIQQQFEQEKQERL 73 (131)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34444555555554433
No 426
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=48.29 E-value=1.5e+02 Score=24.13 Aligned_cols=85 Identities=25% Similarity=0.290 Sum_probs=51.2
Q ss_pred HHhhhhhHHhhhhchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Q 024699 100 FDRGLKLEVELRASEPVRAEVVQLRAEVQ-KLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRA 178 (264)
Q Consensus 100 ~ek~~KmEAelra~e~lk~El~q~raE~q-~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa 178 (264)
-+|-.++..++...+..+.|..+...+.+ +|..++++-..-+....++..+...+. +...+.|+ .+.+..++..
T Consensus 35 ~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~~~a~~~~~~~--~~~a~~ea---~~~~~~a~~~ 109 (140)
T PRK07353 35 EEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAEAEADKLAAEA--LAEAQAEA---QASKEKARRE 109 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH---HHHHHHHHHH
Confidence 34556666777777777777777666664 355566665555666655555444443 33333343 4445678888
Q ss_pred hhhhhhhhHHH
Q 024699 179 FEFEKKANEEQ 189 (264)
Q Consensus 179 ~EyEKk~~~e~ 189 (264)
|+.|++.-...
T Consensus 110 i~~e~~~a~~~ 120 (140)
T PRK07353 110 IEQQKQAALAQ 120 (140)
T ss_pred HHHHHHHHHHH
Confidence 88888765443
No 427
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=48.29 E-value=1.2e+02 Score=23.17 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (264)
Q Consensus 115 ~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qe 147 (264)
.|+.|+..+..+...|...+.+|..+.+.+.+|
T Consensus 22 ~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 22 LLQMENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443
No 428
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=48.24 E-value=16 Score=32.31 Aligned_cols=39 Identities=33% Similarity=0.477 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHH
Q 024699 91 DKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQK 129 (264)
Q Consensus 91 e~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~ 129 (264)
|-|..+-.-||+.+-||.||...|.|+.|++.++-|+.-
T Consensus 4 D~EsklN~AIERnalLE~ELdEKE~L~~~~QRLkDE~RD 42 (166)
T PF04880_consen 4 DFESKLNQAIERNALLESELDEKENLREEVQRLKDELRD 42 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCH---------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667778999999999996666666665555554443
No 429
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=48.17 E-value=1.8e+02 Score=24.95 Aligned_cols=21 Identities=33% Similarity=0.476 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 024699 199 NLISMAREIEKLRAELLNTER 219 (264)
Q Consensus 199 nlismarEvEKLRaElanae~ 219 (264)
+++.-..+++.|+.+|.+-+.
T Consensus 146 Dy~~~~~~~~~l~~~i~~l~r 166 (177)
T PF13870_consen 146 DYDKTKEEVEELRKEIKELER 166 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666665443
No 430
>PF14735 HAUS4: HAUS augmin-like complex subunit 4
Probab=48.02 E-value=2.3e+02 Score=26.29 Aligned_cols=127 Identities=16% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHh--------hhhhH-HHHHHHHHhhhhhHHhhhhchhHHH
Q 024699 48 REMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKL--------RADKE-AHTRELFDRGLKLEVELRASEPVRA 118 (264)
Q Consensus 48 ~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l--------~ae~e-~q~R~l~ek~~KmEAelra~e~lk~ 118 (264)
.|++++...-..+-..-+.|.+-...--++|.+..+....+ +++.| +...=|.-++..|.. -||-
T Consensus 85 ~ek~~~~~~k~~~~e~~~~l~~q~~~y~~vL~~cl~~L~~li~~~rl~~q~~~d~~~~~~L~~kceam~l------KLr~ 158 (238)
T PF14735_consen 85 EEKQRLEKEKAQLRELLVLLERQFATYYQVLLQCLQLLQKLIEKHRLGTQAELDKIKAEYLEAKCEAMIL------KLRV 158 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHhHHHHHHHHHHHHHHHH------HHHH
Q ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 024699 119 EVVQLRAE------VQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (264)
Q Consensus 119 El~q~raE------~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~E 180 (264)
+-.++-.| |.-|...|+.|.+.++.+.+++.++...+..--.+-.|.+.+-+|+.+++..|+
T Consensus 159 ~~~~iL~~TYTpe~v~Al~~Ir~~L~~~~~~~e~~~~~a~~~L~~Ye~lg~~F~~ivreY~~l~~~ie 226 (238)
T PF14735_consen 159 LELEILSDTYTPETVPALRKIRDHLEEAIEELEQELQKARQRLESYEGLGPEFEEIVREYTDLQQEIE 226 (238)
T ss_pred HHHHHHHccCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHHHH
No 431
>PF15463 ECM11: Extracellular mutant protein 11
Probab=47.77 E-value=1.4e+02 Score=25.01 Aligned_cols=50 Identities=18% Similarity=0.292 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHH
Q 024699 121 VQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEA-ENKQLIAMRADIDGIRS 170 (264)
Q Consensus 121 ~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~a-d~qqipal~aEie~lrq 170 (264)
.|-..=+++|...|++|.-.++.++.++++=.. -..+...|...|+.|++
T Consensus 83 ~qf~~l~~kl~~~R~~~r~~~~~fe~eI~~R~eav~~~~~~l~~kL~~mk~ 133 (139)
T PF15463_consen 83 EQFSELMQKLKEARRKLRKKFAVFEDEINRRAEAVRAQGEQLDRKLEKMKE 133 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455789999999999999999999985443 33445555555555554
No 432
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=47.75 E-value=1.9e+02 Score=25.32 Aligned_cols=35 Identities=9% Similarity=0.311 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (264)
Q Consensus 118 ~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ 152 (264)
.++.+++..+-...+.++.|..++.....+..+..
T Consensus 37 ~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~ 71 (221)
T PF04012_consen 37 EQLRKARQALARVMANQKRLERKLDEAEEEAEKWE 71 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443333
No 433
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=47.59 E-value=90 Score=25.04 Aligned_cols=56 Identities=27% Similarity=0.346 Sum_probs=43.9
Q ss_pred hhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 88 LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGL 144 (264)
Q Consensus 88 l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l 144 (264)
+-.+--..+..+-..+..+|+.|+. +.=+.++...=-++|.....+=+||+++|.+
T Consensus 41 ~~~~iT~~f~~~S~ei~~ie~~L~~-~~~~~~la~~i~~lQ~~Ek~KL~lT~~lQ~l 96 (97)
T PF14966_consen 41 LCHEITQEFSAISKEILAIEAELRD-EHERPDLAELIRELQEQEKEKLELTAKLQVL 96 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334446677777888899998885 5556778888889999999999999999876
No 434
>PF05465 Halo_GVPC: Halobacterial gas vesicle protein C (GVPC) repeat; InterPro: IPR008639 This family consists of Halobacterium gas vesicle protein C sequences which are thought to confer stability to the gas vesicle membranes [,].; GO: 0031412 gas vesicle organization, 0031411 gas vesicle
Probab=47.37 E-value=24 Score=23.19 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhh
Q 024699 158 LIAMRADIDGIRSELVEARRAFE 180 (264)
Q Consensus 158 ipal~aEie~lrqElqr~Raa~E 180 (264)
|..|.++|+.+|.|+.-.+.+|+
T Consensus 1 V~~l~a~I~~~r~~f~~~~~aF~ 23 (32)
T PF05465_consen 1 VSDLLAAIAEFREEFDDTQDAFE 23 (32)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999998886
No 435
>PRK11281 hypothetical protein; Provisional
Probab=47.25 E-value=4.7e+02 Score=29.64 Aligned_cols=44 Identities=14% Similarity=0.184 Sum_probs=18.6
Q ss_pred HHHHhhHHHHHHHhhhhhHhhhhhH---HHHHHHHHhhhhhHHhhhh
Q 024699 69 RELTASKDEIHRLGQIIPKLRADKE---AHTRELFDRGLKLEVELRA 112 (264)
Q Consensus 69 qeLaaaq~Elqrl~~~~~~l~ae~e---~q~R~l~ek~~KmEAelra 112 (264)
++|+..|.++...+..+..+++.-| ..+-+-..+...+...+.+
T Consensus 135 ~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~ 181 (1113)
T PRK11281 135 DQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKG 181 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444444444444444444444333 2223334444444444433
No 436
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=47.04 E-value=3.7e+02 Score=28.33 Aligned_cols=50 Identities=12% Similarity=0.234 Sum_probs=29.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 153 AENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAE 213 (264)
Q Consensus 153 ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaE 213 (264)
.+.-.+..+++.+..|++++...+ ..+.+....|+.+..+.||++..+.=
T Consensus 336 ~~hP~v~~l~~~~~~L~~~~~~l~-----------~~~~~~p~~e~~~~~L~R~~~~~~~l 385 (726)
T PRK09841 336 KDHPTYRALLEKRQTLEQERKRLN-----------KRVSAMPSTQQEVLRLSRDVEAGRAV 385 (726)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHH-----------HHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 344445555566666666555443 33445566677777788877666554
No 437
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=46.30 E-value=1.6e+02 Score=23.78 Aligned_cols=36 Identities=25% Similarity=0.452 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 024699 117 RAEVVQLRAEVQKLNSSRQELTTQIKGL--TKDVNRLE 152 (264)
Q Consensus 117 k~El~q~raE~q~L~~~RQeL~~qvq~l--~qeL~r~~ 152 (264)
|.++.++...+.+...-=+.+-++++.| .+|+.+++
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~ 71 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQ 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4555555554444444334444444444 44444333
No 438
>PF11705 RNA_pol_3_Rpc31: DNA-directed RNA polymerase III subunit Rpc31; InterPro: IPR024661 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. RNA polymerase III contains seventeen subunits in yeasts and in human cells. Twelve of these are akin to RNA polymerase I or II and the other five are RNA polymerase III-specific, and form the functionally distinct groups: (i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31, Rpc34 and Rpc82 form a cluster of enzyme-specific subunits that contribute to transcription initiation in Saccharomyces cerevisiae and Homo sapiens. There is evidence that these subunits are anchored at or near the N-terminal Zn-fold of Rpc1, itself prolonged by a highly conserved but RNA polymerase III-specific domain []. This entry represents the Rpc31 subunit.
Probab=46.19 E-value=55 Score=29.55 Aligned_cols=34 Identities=15% Similarity=0.186 Sum_probs=19.6
Q ss_pred CCCCCCCCCCCCCCchhhHHHHHHHHHHhhhhcc
Q 024699 22 RPVLTRGLAPMHFHPMTLEEEIEIQRREMHRIIS 55 (264)
Q Consensus 22 ~p~~~r~~gp~pp~P~~LEe~l~~Q~~EiqrLl~ 55 (264)
+|.|+...-|.|+++.--|..+.....+++..+.
T Consensus 33 ~~lfP~~~~P~~~~~t~~E~~~v~~~~~lr~~~~ 66 (233)
T PF11705_consen 33 PPLFPPLNLPVPLPLTEEERYLVALKRELRERMR 66 (233)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3334433335555555577777777777666553
No 439
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=45.99 E-value=1.4e+02 Score=25.22 Aligned_cols=42 Identities=21% Similarity=0.265 Sum_probs=19.8
Q ss_pred HhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 108 VELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVN 149 (264)
Q Consensus 108 Aelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~ 149 (264)
+++.+.+.|+.|+....+..++-...-++|...++.+..++.
T Consensus 38 ~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~ 79 (160)
T PF13094_consen 38 ANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALERERE 79 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555554444444444444444444444444443
No 440
>PF13166 AAA_13: AAA domain
Probab=45.85 E-value=3.5e+02 Score=27.74 Aligned_cols=65 Identities=20% Similarity=0.358 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHhhhh
Q 024699 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ--LIAMRADIDGIRSELVEARRAF 179 (264)
Q Consensus 115 ~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qq--ipal~aEie~lrqElqr~Raa~ 179 (264)
.+...+..+...+..+.....+.-..+..+.+++..+...+.. +..+..+++.+..++..+..++
T Consensus 360 ~~~~~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 426 (712)
T PF13166_consen 360 EINEDIDELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLHLIAKLKEDIEEYQKEIKELEKEI 426 (712)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666666666666666665555544422 2334444444444444443333
No 441
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=45.70 E-value=3.2e+02 Score=27.26 Aligned_cols=86 Identities=26% Similarity=0.306 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHH--------------
Q 024699 136 ELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLI-------------- 201 (264)
Q Consensus 136 eL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknli-------------- 201 (264)
+.+.++..|.+.+.+.-++..+.=.|+.=--.+|-|.|.+=..||--|..-----||++-.++.|.
T Consensus 49 ~~t~kl~el~Kk~~k~I~ksrpf~elk~~er~~r~e~QkAa~~FeRat~vl~~AkeqVsl~~~sL~~~~~~~~~~~~~ev 128 (426)
T KOG2008|consen 49 EATVKLDELVKKIGKAIEKSRPFWELKRVERQARLEAQKAAQDFERATEVLRAAKEQVSLAEQSLLEDDKRQFDSAWQEV 128 (426)
T ss_pred HHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHH
Confidence 455667777777777777777777777766777777777777666655433333344444444433
Q ss_pred -----H--HHHHHHHHHHHHhhhhhcc
Q 024699 202 -----S--MAREIEKLRAELLNTERRA 221 (264)
Q Consensus 202 -----s--marEvEKLRaElanae~ra 221 (264)
- |-.|=||+|||+.-+.+-+
T Consensus 129 lnh~~qrV~EaE~e~t~aE~~Has~a~ 155 (426)
T KOG2008|consen 129 LNHATQRVMEAEQEKTRAELVHASTAA 155 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 3344578888877665433
No 442
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=45.43 E-value=41 Score=24.16 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 024699 158 LIAMRADIDGIRSELVEARRAFEFEKKA 185 (264)
Q Consensus 158 ipal~aEie~lrqElqr~Raa~EyEKk~ 185 (264)
|.+|+..++.|+.+++++.++|.-=||+
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKKa 28 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKKA 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888999999999999998877775
No 443
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.25 E-value=2.5e+02 Score=30.73 Aligned_cols=111 Identities=15% Similarity=0.216 Sum_probs=71.2
Q ss_pred CchhhHHHHHHHHHHhhhhcccc-cccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhc
Q 024699 35 HPMTLEEEIEIQRREMHRIISEN-RHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRAS 113 (264)
Q Consensus 35 ~P~~LEe~l~~Q~~EiqrLl~dN-qRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~ 113 (264)
.-+-||+++..+..||++|-.-| |-+..+. +||...+-|+|-|...+.+... ++-..-+..
T Consensus 49 ~~e~Le~~ir~~d~EIE~lcn~hyQdFidsI----dEL~~Vr~daq~Lks~vsd~N~--------------rLQ~~g~eL 110 (800)
T KOG2176|consen 49 VMEKLENRIRNHDKEIEKLCNFHYQDFIDSI----DELLKVRGDAQKLKSQVSDTNR--------------RLQESGKEL 110 (800)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhhHHHHH----HHHHHHHHHHHHHHHHHhhhhh--------------HHHHHHHHH
Confidence 44779999999999999996654 7777775 7888888888887777666552 222222222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhhhHHHHH
Q 024699 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKG--LTKDVNRLEAENKQLIAMRA 163 (264)
Q Consensus 114 e~lk~El~q~raE~q~L~~~RQeL~~qvq~--l~qeL~r~~ad~qqipal~a 163 (264)
-..+++|...+.==.+++.+-.-|+.=|+. |...++..-++-|-.|+||.
T Consensus 111 iv~~e~lv~~r~~~rnit~ai~~l~~Cl~vLEl~sK~~e~~s~kqyy~aLkt 162 (800)
T KOG2176|consen 111 IVKKEDLVRCRTQSRNITEAIELLTLCLPVLELYSKLQEQMSEKQYYPALKT 162 (800)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 344566666666555565555555554444 45555555556666666653
No 444
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=45.20 E-value=98 Score=22.00 Aligned_cols=23 Identities=9% Similarity=-0.101 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Q 024699 159 IAMRADIDGIRSELVEARRAFEF 181 (264)
Q Consensus 159 pal~aEie~lrqElqr~Raa~Ey 181 (264)
-.||.++..-.+|+..+|.+|+.
T Consensus 18 ~elk~~l~~Q~kE~~~LRntI~e 40 (45)
T PF11598_consen 18 QELKELLRQQIKETRFLRNTIME 40 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777788999999998863
No 445
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=45.14 E-value=3e+02 Score=26.81 Aligned_cols=56 Identities=18% Similarity=0.277 Sum_probs=34.0
Q ss_pred hHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024699 92 KEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN 155 (264)
Q Consensus 92 ~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~ 155 (264)
.|+-.++++-+-..|+|--|..+.+-.|- .|.++-|+...++|.....|.-+.+|.
T Consensus 80 ~e~ls~~~~~~~~~~~aa~Rplel~e~Ek--------vlk~aIq~i~~~~q~~~~~Lnnvasde 135 (338)
T KOG3647|consen 80 CEMLSKELLHKESLMSAAQRPLELLEVEK--------VLKSAIQAIQVRLQSSRAQLNNVASDE 135 (338)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 36777888888888888777776664443 234444445555555555555444443
No 446
>PHA02414 hypothetical protein
Probab=44.98 E-value=1e+02 Score=25.67 Aligned_cols=73 Identities=19% Similarity=0.325 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hhHHHHHHH
Q 024699 91 DKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENK-----QLIAMRADI 165 (264)
Q Consensus 91 e~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~q-----qipal~aEi 165 (264)
|.|-+|-.|+.++..+|--++..+-.. +.+-..|..+-.||..=|-++.++++ .+++.| ||.-|..-|
T Consensus 1 ~~D~~in~Lv~~v~~ledKiQ~Gelt~------kgdn~eL~~av~ELRdivvslDKd~A-v~sEKqshi~yQi~~Lee~i 73 (111)
T PHA02414 1 EMDKEINNLVSQVETLEDKIQEGELTD------KGDNKELEVAVAELRDIVVSLDKDVA-VNSEKQSHIYYQIERLEEKI 73 (111)
T ss_pred CcchHHHHHHHHHHHHHHHHhcCcccc------CCchHHHHHHHHHHHHHHHHhhhHhh-hhHHHhhHHHHHHHHHHHHH
Confidence 356778889999999998888887664 33666666777777777788888876 455544 455555556
Q ss_pred HHHHH
Q 024699 166 DGIRS 170 (264)
Q Consensus 166 e~lrq 170 (264)
+.|++
T Consensus 74 ~aL~~ 78 (111)
T PHA02414 74 SALAE 78 (111)
T ss_pred HHHHh
Confidence 65544
No 447
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=44.50 E-value=4e+02 Score=28.06 Aligned_cols=99 Identities=16% Similarity=0.164 Sum_probs=59.1
Q ss_pred hhHHHHHHHhhhhhHhhhhhHH---HHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 73 ASKDEIHRLGQIIPKLRADKEA---HTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVN 149 (264)
Q Consensus 73 aaq~Elqrl~~~~~~l~ae~e~---q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~ 149 (264)
..-++++-++..+..++.|-+. +.-..++.+-||+++| ..++.++.-.++|...|...-|....--..|+.|+.
T Consensus 202 ~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql---~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~ 278 (596)
T KOG4360|consen 202 DCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQL---VDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELE 278 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4566777778777777655553 3444567788888744 345566666666666666666655554455555555
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHhh
Q 024699 150 RLEAENKQLIAMRADIDGIRSELVEARR 177 (264)
Q Consensus 150 r~~ad~qqipal~aEie~lrqElqr~Ra 177 (264)
-++--. ....+++..-..||+.+|+
T Consensus 279 EleDky---AE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 279 ELEDKY---AECMQMLHEAEEELKCLRS 303 (596)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHhhcc
Confidence 444322 3334445555667777765
No 448
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=44.43 E-value=1.1e+02 Score=27.94 Aligned_cols=39 Identities=18% Similarity=0.352 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhh
Q 024699 136 ELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEF 181 (264)
Q Consensus 136 eL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~Ey 181 (264)
+|..+-+.|.+|++.++.++ .+++.++.|..++|...++
T Consensus 73 ~l~~en~~L~~e~~~l~~~~-------~~~~~l~~en~~L~~lL~~ 111 (276)
T PRK13922 73 DLREENEELKKELLELESRL-------QELEQLEAENARLRELLNL 111 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcC
Confidence 33333444444444444444 4444555555555554443
No 449
>PF14992 TMCO5: TMCO5 family
Probab=44.28 E-value=3e+02 Score=26.48 Aligned_cols=28 Identities=14% Similarity=0.412 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 185 ANEEQIEQKQAMENNLISMAREIEKLRAE 213 (264)
Q Consensus 185 ~~~e~~Eq~qaMEknlismarEvEKLRaE 213 (264)
.+.+.++++.. +|++.-+-+||.|---.
T Consensus 155 klkE~L~rmE~-ekE~~lLe~el~k~q~~ 182 (280)
T PF14992_consen 155 KLKEKLRRMEE-EKEMLLLEKELSKYQMQ 182 (280)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHhch
Confidence 34445588888 88888888888876654
No 450
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=44.00 E-value=2e+02 Score=24.29 Aligned_cols=95 Identities=21% Similarity=0.290 Sum_probs=53.9
Q ss_pred HhhhhhHHhhhhchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 024699 101 DRGLKLEVELRASEPVRAEVVQLRAEVQK-LNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (264)
Q Consensus 101 ek~~KmEAelra~e~lk~El~q~raE~q~-L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 179 (264)
+|-.++..++...+..+.|..++..+.++ |..++++-..-+....++-.+...+. +-..+.| ....+..++..|
T Consensus 39 ~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~--~~~A~~e---a~~~~~~a~~~i 113 (164)
T PRK14471 39 EREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEAREIKEKMIADA--KEEAQVE---GDKMIEQAKASI 113 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH---HHHHHHHHHHHH
Confidence 45566777777777777888877777764 55566665555555444444333322 2222333 334456677778
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 024699 180 EFEKKANEEQIEQKQAMENNLISMARE 206 (264)
Q Consensus 180 EyEKk~~~e~~Eq~qaMEknlismarE 206 (264)
+.|+..-...+ .+..+.+|-+
T Consensus 114 ~~ek~~a~~~l------~~~i~~la~~ 134 (164)
T PRK14471 114 ESEKNAAMAEI------KNQVANLSVE 134 (164)
T ss_pred HHHHHHHHHHH------HHHHHHHHHH
Confidence 87776554433 3344445554
No 451
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=43.82 E-value=2.1e+02 Score=24.59 Aligned_cols=85 Identities=16% Similarity=0.203 Sum_probs=43.9
Q ss_pred HhhhhhHHhhhhchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 024699 101 DRGLKLEVELRASEPVRAEVVQLRAEVQK-LNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (264)
Q Consensus 101 ek~~KmEAelra~e~lk~El~q~raE~q~-L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 179 (264)
+|-.++..++...+..+.|..++..+.+. |..++++-..-+....++-.+...+. +-..+.|.+ .-..++++.+
T Consensus 53 ~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~i--i~~A~~ea~---~~~~~a~~~i 127 (167)
T PRK08475 53 SRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQKI--EKQTKDDIE---NLIKSFEELM 127 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH---HHHHHHHHHH
Confidence 34455666666666666666666665543 33444444444444444433333332 223333333 3345677888
Q ss_pred hhhhhhhHHHH
Q 024699 180 EFEKKANEEQI 190 (264)
Q Consensus 180 EyEKk~~~e~~ 190 (264)
+.|+..-...+
T Consensus 128 e~Ek~~a~~el 138 (167)
T PRK08475 128 EFEVRKMEREV 138 (167)
T ss_pred HHHHHHHHHHH
Confidence 88877544433
No 452
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=43.80 E-value=2.6e+02 Score=25.60 Aligned_cols=76 Identities=17% Similarity=0.188 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhc
Q 024699 142 KGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAME-NNLISMAREIEKLRAELLNTERR 220 (264)
Q Consensus 142 q~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaME-knlismarEvEKLRaElanae~r 220 (264)
.....++.|.+.=.++--.-+.++|..+.++..+.+.++--+.. .+...+.+. ..-+.--.++..+++++..++..
T Consensus 125 ~~a~~~~~r~~~L~~~g~is~~~~~~a~~~~~~a~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~~~ 201 (334)
T TIGR00998 125 LQAELDLRRRVPLFKKGLISREELDHARKALLSAKAALNAAIQE---QLNANQALVRGTPLKKQPAVQEAKERLKTAWLA 201 (334)
T ss_pred HHhHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 33444555544433333334456666666666666655432221 111111110 01112223477777887776544
No 453
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=43.63 E-value=2e+02 Score=28.40 Aligned_cols=25 Identities=24% Similarity=0.462 Sum_probs=11.0
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhHhh
Q 024699 65 THLQRELTASKDEIHRLGQIIPKLR 89 (264)
Q Consensus 65 vaLrqeLaaaq~Elqrl~~~~~~l~ 89 (264)
-.|++++.....++..+...+..++
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~ 354 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLK 354 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333
No 454
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=43.27 E-value=73 Score=27.42 Aligned_cols=58 Identities=26% Similarity=0.302 Sum_probs=38.5
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024699 152 EAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTE 218 (264)
Q Consensus 152 ~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElanae 218 (264)
..+..+.-.|+.||..+++|+...-+.=||=|-++. +..+..+-.|++++..++....
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl---------~Rk~~kl~~el~~~~~~~~~~~ 93 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKL---------NRKLDKLEEELEKLNKSLSSEK 93 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHH---------HHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677889999999999888777777666653 4445556666666666655543
No 455
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=43.26 E-value=1.4e+02 Score=25.19 Aligned_cols=36 Identities=25% Similarity=0.202 Sum_probs=29.0
Q ss_pred hHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHH
Q 024699 86 PKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVV 121 (264)
Q Consensus 86 ~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~ 121 (264)
..-+..-|++--++=-||+.||.|.++.+.++.+|.
T Consensus 17 ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~ 52 (134)
T PF08232_consen 17 ERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLK 52 (134)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556678888888999999999999999988774
No 456
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=43.22 E-value=46 Score=26.94 Aligned_cols=9 Identities=11% Similarity=0.091 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 024699 119 EVVQLRAEV 127 (264)
Q Consensus 119 El~q~raE~ 127 (264)
++.+++.++
T Consensus 35 q~~~~~~e~ 43 (105)
T PRK00888 35 QVAAQQQTN 43 (105)
T ss_pred HHHHHHHHH
Confidence 333333333
No 457
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=42.51 E-value=62 Score=27.87 Aligned_cols=35 Identities=11% Similarity=0.380 Sum_probs=19.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 024699 146 KDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (264)
Q Consensus 146 qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~E 180 (264)
.|.+|----.-++..+..||+.+.+++...++.|+
T Consensus 63 DeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~ 97 (161)
T PF04420_consen 63 DEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFD 97 (161)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555556666666666665555543
No 458
>PRK09465 tolC outer membrane channel protein; Reviewed
Probab=42.35 E-value=3e+02 Score=25.98 Aligned_cols=47 Identities=4% Similarity=0.060 Sum_probs=26.0
Q ss_pred hHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 106 LEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (264)
Q Consensus 106 mEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ 152 (264)
.+.-.++...-+.|+.++++++............+++.....|..+-
T Consensus 162 ~~~r~~~G~~~~~D~~~a~~~l~~a~~~~~~~~~~~~~a~~~L~~ll 208 (446)
T PRK09465 162 TTQRFNVGLVAITDVQNAQAQYDTVLANEVLARNNLDNAYEALRQIT 208 (446)
T ss_pred HHHHHhCCCchhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 34555667777788888777665544444444444444444444433
No 459
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=42.31 E-value=2.8e+02 Score=25.66 Aligned_cols=55 Identities=18% Similarity=0.369 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024699 161 MRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELL 215 (264)
Q Consensus 161 l~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaEla 215 (264)
+.+++++++.|++..=...|-..+-+..+.-|.+..-+-+..+..|-.+|+.+|.
T Consensus 156 ~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 156 LKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 3445555555555554444444455555555555555555556666666666654
No 460
>PRK14156 heat shock protein GrpE; Provisional
Probab=42.20 E-value=2.1e+02 Score=25.46 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=27.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 024699 151 LEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQ 192 (264)
Q Consensus 151 ~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq 192 (264)
--+..++|-.++++++.++..+.|+.|.|+.-||-...-.++
T Consensus 29 ~~~~~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~ 70 (177)
T PRK14156 29 ETPEKSELELANERADEFENKYLRAHAEMQNIQRRANEERQQ 70 (177)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566677777777777888888887777765554444
No 461
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=42.12 E-value=3.7e+02 Score=26.94 Aligned_cols=97 Identities=20% Similarity=0.244 Sum_probs=61.0
Q ss_pred HhhhhhHhhhhhH--HHHHHHHHhhhhhHHhhhhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024699 81 LGQIIPKLRADKE--AHTRELFDRGLKLEVELRAS-EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ 157 (264)
Q Consensus 81 l~~~~~~l~ae~e--~q~R~l~ek~~KmEAelra~-e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qq 157 (264)
|.+-|.+|-.-.| .+||+-+++-.+=-.+|+.. +.|+++|-+++.=+-+....-|-|.+-+..+++|=++++..++.
T Consensus 73 lq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~ 152 (401)
T PF06785_consen 73 LQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDA 152 (401)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444555532222 67888887776666677765 78889999888877777777777777777777777766665443
Q ss_pred hHHHH----HHHHHHHHHHHHHhh
Q 024699 158 LIAMR----ADIDGIRSELVEARR 177 (264)
Q Consensus 158 ipal~----aEie~lrqElqr~Ra 177 (264)
+--.. .|-..|-+|+.-+++
T Consensus 153 l~~e~~Ekeeesq~LnrELaE~la 176 (401)
T PF06785_consen 153 LQQECGEKEEESQTLNRELAEALA 176 (401)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHH
Confidence 32222 233445555555444
No 462
>PHA01750 hypothetical protein
Probab=41.95 E-value=69 Score=24.93 Aligned_cols=36 Identities=25% Similarity=0.525 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVN 149 (264)
Q Consensus 114 e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~ 149 (264)
|-+++||.-++.|++.+.---.+|+.||..+.+.+.
T Consensus 38 eIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~d 73 (75)
T PHA01750 38 EIVNSELDNLKTEIEELKIKQDELSRQVEEIKRKLD 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 678899999999999988666677777777666553
No 463
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=41.93 E-value=1.8e+02 Score=23.24 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=12.0
Q ss_pred HHHHHhhHHHHHHHhhhhhHhhhh
Q 024699 68 QRELTASKDEIHRLGQIIPKLRAD 91 (264)
Q Consensus 68 rqeLaaaq~Elqrl~~~~~~l~ae 91 (264)
+++|+.++++++.....+..+...
T Consensus 19 ~~~la~~~~~~~~~~~~l~~l~~~ 42 (141)
T TIGR02473 19 KLELAKAQAEFERLETQLQQLIKY 42 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555444444433
No 464
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=41.91 E-value=1.3e+02 Score=27.16 Aligned_cols=57 Identities=25% Similarity=0.353 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 024699 160 AMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRA 221 (264)
Q Consensus 160 al~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElanae~ra 221 (264)
.+.+.|.+++.+..|++.-++ |+ +.++.+-..|+-|-..-.|||.+.+.+...++|.
T Consensus 136 D~~arl~~l~~~~~rl~~ll~---ka--~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 136 DLEARLKNLEAEEERLLELLE---KA--KTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---hc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344677888888888888776 22 2677888899999999999999999999999887
No 465
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=41.78 E-value=24 Score=26.07 Aligned_cols=18 Identities=44% Similarity=0.656 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhhhhhc
Q 024699 203 MAREIEKLRAELLNTERR 220 (264)
Q Consensus 203 marEvEKLRaElanae~r 220 (264)
++..+++|.+||++.|.|
T Consensus 36 i~~al~~Lk~EIaklE~R 53 (53)
T PF08898_consen 36 IAAALEKLKAEIAKLEAR 53 (53)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 566788999999998865
No 466
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=41.75 E-value=26 Score=38.97 Aligned_cols=23 Identities=9% Similarity=0.267 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhh
Q 024699 157 QLIAMRADIDGIRSELVEARRAF 179 (264)
Q Consensus 157 qipal~aEie~lrqElqr~Raa~ 179 (264)
-|..||+=+|+|--|.-.-=+.|
T Consensus 1097 cItgLr~AmEaLvvev~knPaiI 1119 (1282)
T KOG0921|consen 1097 CITGLRPAMEALVVEVCKNPAII 1119 (1282)
T ss_pred HHhhhHHHHHHHHHHHhcChhHh
Confidence 34555666666555544444433
No 467
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=41.75 E-value=5e+02 Score=28.29 Aligned_cols=138 Identities=25% Similarity=0.305 Sum_probs=75.0
Q ss_pred HHHHHHHHHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHh-hhhchhHHHH
Q 024699 41 EEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVE-LRASEPVRAE 119 (264)
Q Consensus 41 e~l~~Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAe-lra~e~lk~E 119 (264)
+-|.-|-.||+||=.+=+-|-.+-.-=+=.|.+.--||.+|...-..-++|.| +|-...++-|.- .+.-|..+.|
T Consensus 66 elis~qlqE~rrle~e~~~lre~sl~qkmrLe~qa~Ele~l~~ae~agraEae----~Lraala~ae~~R~~lEE~~q~E 141 (739)
T PF07111_consen 66 ELISRQLQELRRLEEEVRALRETSLQQKMRLEAQAEELEALARAEKAGRAEAE----ELRAALAGAEVVRKNLEEGSQRE 141 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHH----HHHHHHhhHHHHHHhhHHHHHHH
Confidence 45667778888886665444333211122344445577777655555555532 111111111110 0111344555
Q ss_pred HHHHHH----HHHHHHHHHH----HHHHHHHHHHHHHHHHHH----hhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Q 024699 120 VVQLRA----EVQKLNSSRQ----ELTTQIKGLTKDVNRLEA----ENKQLIAMRADIDGIRSELVEARRAFEFE 182 (264)
Q Consensus 120 l~q~ra----E~q~L~~~RQ----eL~~qvq~l~qeL~r~~a----d~qqipal~aEie~lrqElqr~Raa~EyE 182 (264)
|..++. ++..|+.+=| .|+.+++.|.+.|.-+.+ +.+.+.+...|.|.|+++|.....+|+-.
T Consensus 142 Lee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q 216 (739)
T PF07111_consen 142 LEEAQRLHQEQLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQ 216 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 554432 2334443333 467777777776655443 66778888888999999888777776653
No 468
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=41.68 E-value=3.1e+02 Score=25.84 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 024699 133 SRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (264)
Q Consensus 133 ~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 179 (264)
+=-++.+|.+.+.++..+...|+.-.|. .-|..|..+.+.+|-+|
T Consensus 70 sW~~il~QTE~isk~~~~~Aeeln~~~~--~kLs~L~~~k~~~rK~~ 114 (237)
T cd07685 70 SWAVLVSQTETLSQVLRKHAEDLNAGPL--SKLSLLIRDKQQLRKTF 114 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHHH
Confidence 4456777788888888777777766555 45666666666665554
No 469
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=41.35 E-value=2.6e+02 Score=24.96 Aligned_cols=21 Identities=24% Similarity=0.170 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhhhhhccc
Q 024699 202 SMAREIEKLRAELLNTERRAC 222 (264)
Q Consensus 202 smarEvEKLRaElanae~ra~ 222 (264)
++..+++.++..+.+..-+|.
T Consensus 120 ~~~~~l~~~~~~~~~~~i~AP 140 (322)
T TIGR01730 120 AAKASLASAQLNLRYTEIRAP 140 (322)
T ss_pred HHHHHHHHHHHhhccCEEECC
Confidence 344567777777777776664
No 470
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=41.34 E-value=2.1e+02 Score=29.70 Aligned_cols=82 Identities=16% Similarity=0.204 Sum_probs=38.7
Q ss_pred HHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH-HHHH
Q 024699 94 AHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGI-RSEL 172 (264)
Q Consensus 94 ~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~l-rqEl 172 (264)
..+-++-+++.+++.. ..... .++.+.-.|+++|...-+..-.++..+.++|+..... +-..-++|..+ +..+
T Consensus 191 ~~~~~yk~~v~~i~~~--~ik~p-~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~---~~~~~~~lk~ap~~D~ 264 (555)
T TIGR03545 191 QDLEEYKKRLEAIKKK--DIKNP-LELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQ---LKADLAELKKAPQNDL 264 (555)
T ss_pred hhHHHHHHHHHHHHhc--cCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHhccHhHH
Confidence 3444445555555441 22222 3555555555555555555555566655555533222 22222333332 3346
Q ss_pred HHHhhhhhh
Q 024699 173 VEARRAFEF 181 (264)
Q Consensus 173 qr~Raa~Ey 181 (264)
.+++..|..
T Consensus 265 ~~L~~~~~~ 273 (555)
T TIGR03545 265 KRLENKYAI 273 (555)
T ss_pred HHHHHHhCC
Confidence 666666554
No 471
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=41.19 E-value=75 Score=25.14 Aligned_cols=33 Identities=27% Similarity=0.497 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024699 124 RAEVQKLNSSRQELTTQIKGLTKDVNRLEAENK 156 (264)
Q Consensus 124 raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~q 156 (264)
++-+.+|.+.=|+|.++|..|..|..-..+|+|
T Consensus 24 ~aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~q 56 (78)
T COG4238 24 NAKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQ 56 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 472
>PLN02939 transferase, transferring glycosyl groups
Probab=41.14 E-value=4.5e+02 Score=29.52 Aligned_cols=72 Identities=25% Similarity=0.338 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhh---hhhhHHHHHHHHHHHH
Q 024699 129 KLNSSRQELTTQIKG-------LTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFE---KKANEEQIEQKQAMEN 198 (264)
Q Consensus 129 ~L~~~RQeL~~qvq~-------l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyE---Kk~~~e~~Eq~qaMEk 198 (264)
.|...|+||...... +.++|.-++.++ -.|+.+|+.|+.|+...-.+=|.- -|-+.-+-..++.+|.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (977)
T PLN02939 202 QLEKLRNELLIRGATEGLCVHSLSKELDVLKEEN---MLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELES 278 (977)
T ss_pred HHHHHhhhhhccccccccccccHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666544333 677777777766 356677777777776665443331 1234445566777777
Q ss_pred HHHHH
Q 024699 199 NLISM 203 (264)
Q Consensus 199 nlism 203 (264)
.++.-
T Consensus 279 ~~~~~ 283 (977)
T PLN02939 279 KFIVA 283 (977)
T ss_pred HHHhh
Confidence 77654
No 473
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=40.99 E-value=1.8e+02 Score=22.96 Aligned_cols=32 Identities=31% Similarity=0.534 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 121 VQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (264)
Q Consensus 121 ~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ 152 (264)
..+..+|++|..-|..|..++........++.
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le 66 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLE 66 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHH
Confidence 44556666666666666666655554444443
No 474
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=40.76 E-value=3.3e+02 Score=26.02 Aligned_cols=104 Identities=13% Similarity=0.182 Sum_probs=53.4
Q ss_pred hhHHhhhhchhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Q 024699 105 KLEVELRASEPVRAEVVQLRAEVQKLNSS------RQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRA 178 (264)
Q Consensus 105 KmEAelra~e~lk~El~q~raE~q~L~~~------RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa 178 (264)
+|.+.|.-.+.++=+|.=+|.=+..+.-+ .+....+.+....+|.-...++ -.+..|+....+|+.-++..
T Consensus 153 e~~~~l~DLesa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~EL---e~~~EeL~~~Eke~~e~~~~ 229 (269)
T PF05278_consen 153 EMIATLKDLESAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEEL---EELEEELKQKEKEVKEIKER 229 (269)
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555433332222 2233334444444444333333 33466677777777777777
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 179 FEFEKKANEEQIEQKQAMENNLISMAREIEKLR 211 (264)
Q Consensus 179 ~EyEKk~~~e~~Eq~qaMEknlismarEvEKLR 211 (264)
|..=+.-=.++=.-.-.|.|++..+-.-|+|..
T Consensus 230 i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~ 262 (269)
T PF05278_consen 230 ITEMKGRLGELEMESTRLSKTIKSIKSKVEKFH 262 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 753332223333344567777777777777764
No 475
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=40.75 E-value=1e+02 Score=31.03 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhh
Q 024699 157 QLIAMRADIDGIRSELVEARRAF 179 (264)
Q Consensus 157 qipal~aEie~lrqElqr~Raa~ 179 (264)
+.+.++..|+.+++|++.+|...
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~ 385 (448)
T PF05761_consen 363 SSSELRPDISELRKERRELRREM 385 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555443
No 476
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.67 E-value=29 Score=34.08 Aligned_cols=17 Identities=35% Similarity=1.011 Sum_probs=10.0
Q ss_pred CCCCCCCC-------CCCCCCCCC
Q 024699 243 GAFDNGYG-------GAWGHYDKH 259 (264)
Q Consensus 243 ~~Y~~~Yg-------~~wg~yd~~ 259 (264)
++|+.||| ...++|++.
T Consensus 79 g~YGgGygg~fGgGyN~~~~~g~n 102 (362)
T KOG3875|consen 79 GPYGGGYGGGFGGGYNRFGPYGTN 102 (362)
T ss_pred CCcCCCcCcccCcccccccccccC
Confidence 47777776 344456665
No 477
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=40.33 E-value=3.8e+02 Score=27.98 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 024699 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLI 159 (264)
Q Consensus 115 ~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqip 159 (264)
.|..-+..+-.|+.+|...-.-...++..+.++++.+.+.++.+-
T Consensus 34 ~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lq 78 (701)
T PF09763_consen 34 SLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQ 78 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchh
Confidence 444455555555555555555555555555555555555544443
No 478
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=40.21 E-value=1.7e+02 Score=27.09 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=22.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHhhhhhh
Q 024699 153 AENKQLIAMRADIDGIRSELVEARRAFEF 181 (264)
Q Consensus 153 ad~qqipal~aEie~lrqElqr~Raa~Ey 181 (264)
+..+.+-.|...|+.|++|+.++|..||.
T Consensus 51 ~~~~~~~~l~~ql~~lq~ev~~LrG~~E~ 79 (263)
T PRK10803 51 AHSQLLTQLQQQLSDNQSDIDSLRGQIQE 79 (263)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 44455667778888888888888888875
No 479
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=40.10 E-value=3.4e+02 Score=30.46 Aligned_cols=37 Identities=22% Similarity=0.383 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 024699 163 ADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISM 203 (264)
Q Consensus 163 aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlism 203 (264)
.|++.|+.|+...|.-|. -|.+...=+++.+..+.++
T Consensus 1092 helenLrnEieklndkIk----dnne~~QVglae~nslmTi 1128 (1424)
T KOG4572|consen 1092 HELENLRNEIEKLNDKIK----DNNEGDQVGLAEENSLMTI 1128 (1424)
T ss_pred HHHHHHHHHHHHHHHHhh----cCCCcchHHHHHhccCCcc
Confidence 455666666666666553 3444444455555444433
No 480
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=39.93 E-value=2.2e+02 Score=23.68 Aligned_cols=91 Identities=19% Similarity=0.358 Sum_probs=43.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccC----CC--CC
Q 024699 155 NKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRACGL----GG--SA 228 (264)
Q Consensus 155 ~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElanae~ra~~~----~g--~~ 228 (264)
+.++-.+++++..+.++++-.+... ......++.+..+.-+-....||+.+=.++-..+.--.-+ .| .-
T Consensus 19 ~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~i~~~Gv~vKd~~~gLvDFPa~~dg~~v~ 93 (120)
T PF09969_consen 19 LEEIRELKAELEELEERLQELEDSL-----EVNGLEAELEELEARLRELIDEIEELGVEVKDLDPGLVDFPAKLDGREVY 93 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchh-----hHHhHHHHHHHHHHHHHHHHHHHHHcCcEEeCCcceeEeCCcccCCCEEE
Confidence 3333444555555555555554444 2222333334444444445555555544444332110001 12 34
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC
Q 024699 229 YGLLNGCPDMRYPGGAFDNGYGG 251 (264)
Q Consensus 229 Yg~~yg~p~~~~~~~~Y~~~Yg~ 251 (264)
+.=.||-|+..|= -.+++||.|
T Consensus 94 LCWk~GE~~I~~w-H~~d~GFaG 115 (120)
T PF09969_consen 94 LCWKEGEPEIAYW-HGLDEGFAG 115 (120)
T ss_pred EEeCCCCcceeee-ccCCccccc
Confidence 5567788888775 466777754
No 481
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=39.81 E-value=2.4e+02 Score=24.11 Aligned_cols=23 Identities=22% Similarity=0.352 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 024699 194 QAMENNLISMAREIEKLRAELLN 216 (264)
Q Consensus 194 qaMEknlismarEvEKLRaElan 216 (264)
.....++.....+-.+++..+.+
T Consensus 108 ~~~r~~l~~~k~~r~k~~~~~~~ 130 (177)
T PF13870_consen 108 AKLREELYRVKKERDKLRKQNKK 130 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555544444
No 482
>COG1344 FlgL Flagellin and related hook-associated proteins [Cell motility and secretion]
Probab=39.77 E-value=2.9e+02 Score=26.47 Aligned_cols=80 Identities=11% Similarity=0.191 Sum_probs=59.5
Q ss_pred HHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHHh
Q 024699 100 FDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEA---ENKQLIAMRADIDGIRSELVEAR 176 (264)
Q Consensus 100 ~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~a---d~qqipal~aEie~lrqElqr~R 176 (264)
+..+.+|..+++....++.-+.-+.+=+|-=...-++.+.-+|.+.+.+-.+.. .-...-++..||+.|..||.+.=
T Consensus 46 ~~is~~l~~~~~~L~q~~~n~~~g~s~lqtae~aL~~~~~~lqrirelavqaan~t~s~~dr~~iq~Ei~~l~~el~~ia 125 (360)
T COG1344 46 LAIALRLRSQIRGLSQAKDNAQDGISKLQTAEGALSEISKILQRIKELAVQAANGTLSDADRAAIQKEIEQLLDELDNIA 125 (360)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888888887777777777777777778888888888888777763 33455678889999999988865
Q ss_pred hhh
Q 024699 177 RAF 179 (264)
Q Consensus 177 aa~ 179 (264)
.+-
T Consensus 126 ntt 128 (360)
T COG1344 126 NTT 128 (360)
T ss_pred hcc
Confidence 443
No 483
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=39.74 E-value=1.8e+02 Score=22.62 Aligned_cols=75 Identities=24% Similarity=0.350 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------hhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHH
Q 024699 128 QKLNSSRQELTTQIKGLTKDVNRLEAENK---------QLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMEN 198 (264)
Q Consensus 128 q~L~~~RQeL~~qvq~l~qeL~r~~ad~q---------qipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEk 198 (264)
..++...+.|..++..+.+....+..... .+.....++..+..+|...=..|....+.|..++++....=.
T Consensus 40 ~~~~~~k~~l~~~l~~le~~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~n~~N~~ll~~~~~~~~ 119 (143)
T PF05130_consen 40 EELVEEKQELLEELRELEKQRQQLLAKLGAEPEEATLSELIEEREELQALWRELRELLEELQELNERNQQLLEQALEFVQ 119 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT--SCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555554444444333221 111145677777778877777777777777777776554444
Q ss_pred HHHH
Q 024699 199 NLIS 202 (264)
Q Consensus 199 nlis 202 (264)
.+++
T Consensus 120 ~~l~ 123 (143)
T PF05130_consen 120 QLLN 123 (143)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 484
>PRK13676 hypothetical protein; Provisional
Probab=39.67 E-value=2e+02 Score=23.02 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=24.3
Q ss_pred HHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHH
Q 024699 97 RELFDRGLKLEVELRASEPVRAEVVQLRAEVQK 129 (264)
Q Consensus 97 R~l~ek~~KmEAelra~e~lk~El~q~raE~q~ 129 (264)
..+||++..|...|+..+.+ .++..+...+..
T Consensus 3 ~ni~d~A~eL~~aI~~s~ey-~~~~~A~~~l~~ 34 (114)
T PRK13676 3 VNIYDLANELERALRELPEY-KALKEAKEAVKA 34 (114)
T ss_pred hhHHHHHHHHHHHHHcCHHH-HHHHHHHHHHHc
Confidence 36889999999999998888 666666665543
No 485
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=39.42 E-value=1.9e+02 Score=22.82 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 125 AEVQKLNSSRQELTTQIKGLTKDVN 149 (264)
Q Consensus 125 aE~q~L~~~RQeL~~qvq~l~qeL~ 149 (264)
.|+.+|..+..++...+.....++.
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~~ 27 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKELT 27 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555444
No 486
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=39.30 E-value=1.7e+02 Score=26.50 Aligned_cols=22 Identities=14% Similarity=0.389 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh
Q 024699 160 AMRADIDGIRSELVEARRAFEF 181 (264)
Q Consensus 160 al~aEie~lrqElqr~Raa~Ey 181 (264)
.++.|||.+..++..+...++|
T Consensus 173 ~v~~eIe~~~~~~~~l~~~v~~ 194 (262)
T PF14257_consen 173 RVRSEIEQLEGQLKYLDDRVDY 194 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhhce
Confidence 3444445555544444444433
No 487
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=39.18 E-value=2.2e+02 Score=23.51 Aligned_cols=75 Identities=17% Similarity=0.250 Sum_probs=0.0
Q ss_pred cccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 024699 58 RHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQEL 137 (264)
Q Consensus 58 qRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL 137 (264)
|+||....-||-...+.+.=+=-=.+-..+|+ .+|+.-| +.|..+..|+..|.=--+-|
T Consensus 1 Qkla~eYsKLraQ~~vLKKaVieEQ~k~~~L~------------------e~Lk~ke---~~LRk~eqE~dSL~FrN~QL 59 (102)
T PF10205_consen 1 QKLAQEYSKLRAQNQVLKKAVIEEQAKNAELK------------------EQLKEKE---QALRKLEQENDSLTFRNQQL 59 (102)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q 024699 138 TTQIKGLTKDVNRLEA 153 (264)
Q Consensus 138 ~~qvq~l~qeL~r~~a 153 (264)
+..|..|..||.....
T Consensus 60 ~kRV~~LQ~El~~~~~ 75 (102)
T PF10205_consen 60 TKRVEVLQEELEESEQ 75 (102)
T ss_pred HHHHHHHHHHHHHhhc
No 488
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=39.18 E-value=1.1e+02 Score=24.27 Aligned_cols=83 Identities=20% Similarity=0.321 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhh-------------------hh------------
Q 024699 136 ELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFE-------------------KK------------ 184 (264)
Q Consensus 136 eL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyE-------------------Kk------------ 184 (264)
+|..+.+.+.+++..++...+++-....|++.+..+|..+-.+.+.. .+
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ve 82 (129)
T cd00890 3 ELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYVE 82 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEEE
Confidence 45555555666666666666666666677777777777665432221 11
Q ss_pred -----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024699 185 -----ANEEQIEQKQAMENNLISMAREIEKLRAELLNTE 218 (264)
Q Consensus 185 -----~~~e~~Eq~qaMEknlismarEvEKLRaElanae 218 (264)
+-...-.....+++++-.+..++.+++.++....
T Consensus 83 ~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~ 121 (129)
T cd00890 83 KSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQ 121 (129)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222334455666677777777777777766544
No 489
>COG4371 Predicted membrane protein [Function unknown]
Probab=39.07 E-value=32 Score=33.08 Aligned_cols=24 Identities=33% Similarity=0.675 Sum_probs=15.4
Q ss_pred CCCCCCC---CCCCCCCCCCCCC-CCCC
Q 024699 227 SAYGLLN---GCPDMRYPGGAFD-NGYG 250 (264)
Q Consensus 227 ~~Yg~~y---g~p~~~~~~~~Y~-~~Yg 250 (264)
++|...| |-|.++|.+++|+ .|||
T Consensus 62 s~~sr~YS~~gpsGGgY~gg~Y~GGGfg 89 (334)
T COG4371 62 SGYSRGYSGGGPSGGGYSGGGYSGGGFG 89 (334)
T ss_pred CCCCCCcCCCCCCCCCCCCCCCCCCCcC
Confidence 4555555 3455677777776 6777
No 490
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=38.91 E-value=79 Score=22.90 Aligned_cols=43 Identities=23% Similarity=0.425 Sum_probs=0.0
Q ss_pred hhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 110 LRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (264)
Q Consensus 110 lra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ 152 (264)
+.....+++++.++..++.+|....++|..+++.++.+-..+.
T Consensus 16 ~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie 58 (80)
T PF04977_consen 16 YSRYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIE 58 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
No 491
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=38.87 E-value=2.9e+02 Score=24.70 Aligned_cols=27 Identities=19% Similarity=0.395 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 119 EVVQLRAEVQKLNSSRQELTTQIKGLT 145 (264)
Q Consensus 119 El~q~raE~q~L~~~RQeL~~qvq~l~ 145 (264)
+|.+++..+-.+.+..+.|..++..+.
T Consensus 39 ~l~~ar~~lA~~~a~~k~~e~~~~~~~ 65 (219)
T TIGR02977 39 TLVEVRTTSARTIADKKELERRVSRLE 65 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443333
No 492
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=38.80 E-value=3.6e+02 Score=25.82 Aligned_cols=23 Identities=9% Similarity=0.286 Sum_probs=9.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhh
Q 024699 157 QLIAMRADIDGIRSELVEARRAF 179 (264)
Q Consensus 157 qipal~aEie~lrqElqr~Raa~ 179 (264)
+|+++++-+-.|..|--+....|
T Consensus 229 ~i~e~~~rl~~l~~~~~~l~k~~ 251 (269)
T PF05278_consen 229 RITEMKGRLGELEMESTRLSKTI 251 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333
No 493
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=38.72 E-value=3.3e+02 Score=29.19 Aligned_cols=40 Identities=20% Similarity=0.467 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 024699 141 IKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (264)
Q Consensus 141 vq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~E 180 (264)
+..+.+++..+..+..+.-+.-.+||.+++-++.++.+..
T Consensus 86 ~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~ 125 (766)
T PF10191_consen 86 MASVQEEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQ 125 (766)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444455667777777776666654
No 494
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=38.69 E-value=93 Score=29.20 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHH
Q 024699 157 QLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNL 200 (264)
Q Consensus 157 qipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknl 200 (264)
-+|..+.-|..|+++++.+-+.|+|-.+.-+++-+|++.|-++.
T Consensus 174 P~~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~ 217 (259)
T PF08657_consen 174 PLPGAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSS 217 (259)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 56688888999999999999999998888899999999996643
No 495
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=38.34 E-value=2.6e+02 Score=23.97 Aligned_cols=92 Identities=17% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 024699 96 TRELFDRGLKLEVELRASEPVRAEVVQLRAEVQK-LNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVE 174 (264)
Q Consensus 96 ~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~-L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr 174 (264)
..-|-+|-.++..++...+..+.|..+...+.++ |..++.+-..-+...+.+-.+...+. +...+.|++.+ +..
T Consensus 42 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~--~~~A~~ea~~~---~~~ 116 (173)
T PRK13460 42 LKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKSDALKLKNKL--LEETNNEVKAQ---KDQ 116 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH---HHH
Q ss_pred HhhhhhhhhhhhHHHHHH
Q 024699 175 ARRAFEFEKKANEEQIEQ 192 (264)
Q Consensus 175 ~Raa~EyEKk~~~e~~Eq 192 (264)
++..|+.|+..-...+..
T Consensus 117 a~~~ie~e~~~a~~el~~ 134 (173)
T PRK13460 117 AVKEIELAKGKALSQLQN 134 (173)
T ss_pred HHHHHHHHHHHHHHHHHH
No 496
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=38.32 E-value=81 Score=23.70 Aligned_cols=35 Identities=29% Similarity=0.478 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHH
Q 024699 137 LTTQIKGLTKDVNRLEAENKQ-LIAMRADIDGIRSE 171 (264)
Q Consensus 137 L~~qvq~l~qeL~r~~ad~qq-ipal~aEie~lrqE 171 (264)
|..+|+.+.+-+.=++.+-.+ +-.|.+||+.|+++
T Consensus 1 l~~qv~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~ 36 (60)
T PF14916_consen 1 LEQQVQSLEKSILFLQQEHAQTLKGLHAEIERLQKR 36 (60)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 497
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=38.30 E-value=3.8e+02 Score=25.97 Aligned_cols=151 Identities=16% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHhhhhhHhhhh------hHHHHHHHHHhhhhhHHhhhhc-----hhHHHHHHHHHHHHHHHHHHHHHH
Q 024699 69 RELTASKDEIHRLGQIIPKLRAD------KEAHTRELFDRGLKLEVELRAS-----EPVRAEVVQLRAEVQKLNSSRQEL 137 (264)
Q Consensus 69 qeLaaaq~Elqrl~~~~~~l~ae------~e~q~R~l~ek~~KmEAelra~-----e~lk~El~q~raE~q~L~~~RQeL 137 (264)
..++....=|..|-..++. ..+ .......|+..+..|+..|-.. +.+...|..+..++.+|...|...
T Consensus 209 a~~a~LE~RL~~LE~~lG~-~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~~~~ 287 (388)
T PF04912_consen 209 ARAADLEKRLARLESALGI-DSDKMSSLDSDTSSSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSELEELAEKRKEA 287 (388)
T ss_pred HHHHHHHHHHHHHHHHhCC-CccccccccccCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhccccc
Q ss_pred ------HHHHHHHHHHHHHHHHhhhhhHHHHHHH---HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH--
Q 024699 138 ------TTQIKGLTKDVNRLEAENKQLIAMRADI---DGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMARE-- 206 (264)
Q Consensus 138 ------~~qvq~l~qeL~r~~ad~qqipal~aEi---e~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarE-- 206 (264)
..+|+.|+.-|.+...=...||.|..=| ..|+.+....=..+..-.+.-.+...+++..++.|..|-.-
T Consensus 288 ~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~ 367 (388)
T PF04912_consen 288 KEDAEQESKIDELYEILPRWDPYAPSLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFK 367 (388)
T ss_pred cccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --HHHHHHHHhhhhhc
Q 024699 207 --IEKLRAELLNTERR 220 (264)
Q Consensus 207 --vEKLRaElanae~r 220 (264)
++.+..-+...+.|
T Consensus 368 ~N~~~i~~n~~~le~R 383 (388)
T PF04912_consen 368 ENMETIEKNVKKLEER 383 (388)
T ss_pred HHHHHHHHHHHHHHHH
No 498
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=38.25 E-value=2.6e+02 Score=24.02 Aligned_cols=73 Identities=18% Similarity=0.199 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q 024699 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQ 189 (264)
Q Consensus 114 e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~ 189 (264)
..+++++.++...+....+.-.++.+++..+..+..+....- -.|+.+++....-+.+....|+..|..|.++
T Consensus 22 ~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q---~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~l 94 (135)
T TIGR03495 22 RNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQ---AQLRQQLAQARALLAQREQRIERLKRENEDL 94 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
No 499
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.82 E-value=5.9e+02 Score=27.99 Aligned_cols=177 Identities=12% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhh--cccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHH--------------------HH
Q 024699 41 EEIEIQRREMHRI--ISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHT--------------------RE 98 (264)
Q Consensus 41 e~l~~Q~~EiqrL--l~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~--------------------R~ 98 (264)
..+..+..++..+ ..+-...+.....+++++..+..++..+...+.........+. ..
T Consensus 270 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (1042)
T TIGR00618 270 EELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQT 349 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 024699 99 LFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQE---LTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEA 175 (264)
Q Consensus 99 l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQe---L~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~ 175 (264)
+......+...+........-+.+.....+.+....++ +..+++...+.+..+.....++-.+...+..+++++..+
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~ 429 (1042)
T TIGR00618 350 LHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHA 429 (1042)
T ss_pred HHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhh
Q 024699 176 RRAFEFEKKANEEQIEQKQAMEN-NLISMAREIEKLRAELLNTE 218 (264)
Q Consensus 176 Raa~EyEKk~~~e~~Eq~qaMEk-nlismarEvEKLRaElanae 218 (264)
+..... +....++..+.+.... .+.....+++.++.++....
T Consensus 430 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 472 (1042)
T TIGR00618 430 KKQQEL-QQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKERE 472 (1042)
T ss_pred HHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=37.80 E-value=3.4e+02 Score=25.31 Aligned_cols=91 Identities=14% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----HHHHHHHHHHHHHHHHHhhhhhhhhh----------------
Q 024699 126 EVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL-----IAMRADIDGIRSELVEARRAFEFEKK---------------- 184 (264)
Q Consensus 126 E~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqi-----pal~aEie~lrqElqr~Raa~EyEKk---------------- 184 (264)
.+-+..+.+-++..=+....-+|.+++++++.+ ..|++|-|.|+-||.++|+.+-.|-+
T Consensus 81 ~vsk~~vtkaqq~~v~~QQ~~~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~lr~ei~~~~a~~rLdLNLEkgr 160 (220)
T KOG3156|consen 81 TVSKELVTKAQQEKVSYQQKVDFAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSLRHEISKTTAEFRLDLNLEKGR 160 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhceeecchhhcc
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024699 185 -ANEEQIEQKQAMENNLISMAREIEKLRAELLNT 217 (264)
Q Consensus 185 -~~~e~~Eq~qaMEknlismarEvEKLRaElana 217 (264)
.-.-..+=.+--|-. --+-+||--||++|+.+
T Consensus 161 ~~d~~~~~~l~~~e~s-~kId~Ev~~lk~qi~s~ 193 (220)
T KOG3156|consen 161 IKDESSSHDLQIKEIS-TKIDQEVTNLKTQIESV 193 (220)
T ss_pred ccchhhhcchhHhHHH-HHHHHHHHHHHHHHHHH
Done!