Query 024699
Match_columns 264
No_of_seqs 90 out of 101
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 12:52:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024699.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024699hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dfs_A Myosin-5A; myosin-V, in 96.9 0.026 9E-07 59.7 17.3 122 54-182 920-1042(1080)
2 3na7_A HP0958; flagellar bioge 96.9 0.094 3.2E-06 46.4 18.2 120 60-183 30-152 (256)
3 3na7_A HP0958; flagellar bioge 96.8 0.069 2.4E-06 47.2 16.5 58 115-173 50-107 (256)
4 3oja_B Anopheles plasmodium-re 95.9 0.051 1.7E-06 51.9 11.0 28 192-219 552-579 (597)
5 1i84_S Smooth muscle myosin he 95.9 0.033 1.1E-06 58.9 10.4 82 66-154 861-942 (1184)
6 3ol1_A Vimentin; structural ge 95.6 0.22 7.6E-06 39.9 12.0 48 105-152 56-103 (119)
7 3vkg_A Dynein heavy chain, cyt 95.5 0.52 1.8E-05 55.3 18.9 59 161-219 2012-2070(3245)
8 3o0z_A RHO-associated protein 95.5 0.71 2.4E-05 39.7 15.3 33 90-125 44-76 (168)
9 3swk_A Vimentin; cytoskeleton, 94.9 0.15 5.3E-06 38.9 8.7 79 66-151 4-82 (86)
10 3oja_B Anopheles plasmodium-re 94.9 0.54 1.8E-05 44.8 14.5 36 157-192 531-566 (597)
11 2v71_A Nuclear distribution pr 93.9 2.9 0.0001 36.4 18.5 92 68-165 23-114 (189)
12 3vkg_A Dynein heavy chain, cyt 93.2 6.8 0.00023 46.3 21.2 50 161-210 2033-2082(3245)
13 2fxo_A Myosin heavy chain, car 92.9 3 0.0001 33.5 16.5 110 95-210 14-123 (129)
14 2no2_A HIP-I, huntingtin-inter 92.4 3.4 0.00011 32.7 13.2 77 117-193 14-91 (107)
15 3ghg_A Fibrinogen alpha chain; 92.3 1.3 4.5E-05 44.1 12.1 41 174-214 114-154 (562)
16 2v71_A Nuclear distribution pr 91.9 5.9 0.0002 34.5 17.9 80 94-179 31-111 (189)
17 2v4h_A NF-kappa-B essential mo 91.5 2.5 8.5E-05 34.1 10.8 81 66-157 28-108 (110)
18 1x79_B RAB GTPase binding effe 91.5 1.5 5.2E-05 35.3 9.7 87 65-157 16-102 (112)
19 1x79_B RAB GTPase binding effe 91.3 3.9 0.00013 32.9 11.9 94 114-216 9-102 (112)
20 3tnu_B Keratin, type II cytosk 91.0 3.4 0.00012 33.0 11.3 23 69-91 29-51 (129)
21 3hnw_A Uncharacterized protein 90.8 4.5 0.00015 33.2 12.1 64 86-149 31-99 (138)
22 1wt6_A Myotonin-protein kinase 90.5 1.2 4E-05 34.3 7.6 42 104-145 17-58 (81)
23 2fxo_A Myosin heavy chain, car 90.1 6.2 0.00021 31.6 16.8 88 103-193 8-95 (129)
24 3mq7_A Bone marrow stromal ant 89.5 6.3 0.00022 32.2 11.6 17 67-83 30-46 (121)
25 3ol1_A Vimentin; structural ge 89.3 7.1 0.00024 31.0 13.1 80 95-180 28-107 (119)
26 3tnu_A Keratin, type I cytoske 89.1 4.6 0.00016 32.4 10.7 23 69-91 31-53 (131)
27 2v4h_A NF-kappa-B essential mo 89.0 7.9 0.00027 31.2 12.3 64 138-208 44-107 (110)
28 3o0z_A RHO-associated protein 88.7 11 0.00036 32.4 18.9 118 82-204 16-138 (168)
29 3plt_A Sphingolipid long chain 88.7 4.7 0.00016 36.2 11.4 93 91-192 87-179 (234)
30 1jcd_A Major outer membrane li 88.3 1.9 6.6E-05 30.4 6.9 42 136-180 8-49 (52)
31 3i00_A HIP-I, huntingtin-inter 87.1 2.5 8.5E-05 34.2 7.9 44 71-114 17-60 (120)
32 3jsv_C NF-kappa-B essential mo 86.5 4.2 0.00014 31.9 8.5 78 67-155 7-84 (94)
33 2w6b_A RHO guanine nucleotide 86.0 3.3 0.00011 29.7 7.1 41 156-196 10-50 (56)
34 3i00_A HIP-I, huntingtin-inter 85.5 6.3 0.00021 31.8 9.5 82 88-185 9-101 (120)
35 3ghg_A Fibrinogen alpha chain; 85.4 9.5 0.00032 38.1 12.4 87 78-180 69-155 (562)
36 3iox_A AGI/II, PA; alpha helix 85.3 19 0.00064 35.6 14.4 57 66-125 6-62 (497)
37 1deq_A Fibrinogen (alpha chain 85.1 19 0.00064 34.6 13.9 34 151-184 129-162 (390)
38 2ocy_A RAB guanine nucleotide 84.7 11 0.00036 31.9 10.9 35 99-136 11-45 (154)
39 3lay_A Zinc resistance-associa 84.5 5.3 0.00018 34.1 9.0 26 153-178 110-135 (175)
40 3onj_A T-snare VTI1; helix, HA 84.4 12 0.00041 28.6 10.6 84 67-159 6-93 (97)
41 1l8d_A DNA double-strand break 84.3 3.8 0.00013 31.3 7.4 42 113-154 5-46 (112)
42 2jee_A YIIU; FTSZ, septum, coi 83.8 9.1 0.00031 29.2 9.1 60 93-155 12-71 (81)
43 4e61_A Protein BIM1; EB1-like 83.0 7.8 0.00027 31.0 8.8 57 110-173 3-59 (106)
44 1use_A VAsp, vasodilator-stimu 82.2 3.2 0.00011 28.6 5.4 24 142-174 18-41 (45)
45 2w6a_A ARF GTPase-activating p 82.2 5.8 0.0002 29.0 7.0 44 115-158 17-60 (63)
46 4dzn_A Coiled-coil peptide CC- 82.0 1.8 6.1E-05 27.6 3.7 26 64-89 4-29 (33)
47 2xnx_M M protein, M1-BC1; cell 81.7 13 0.00045 31.2 10.1 63 114-179 69-131 (146)
48 3bas_A Myosin heavy chain, str 81.4 15 0.00052 27.7 10.8 64 104-177 10-73 (89)
49 3mq9_A Bone marrow stromal ant 80.9 35 0.0012 31.5 14.1 38 143-183 433-470 (471)
50 4dk0_A Putative MACA; alpha-ha 79.3 6.2 0.00021 35.1 8.0 92 117-222 69-160 (369)
51 3s9g_A Protein hexim1; cyclin 79.1 9.4 0.00032 30.4 7.9 50 98-157 34-83 (104)
52 2w83_C C-JUN-amino-terminal ki 78.7 3.1 0.0001 31.7 4.8 18 130-147 28-45 (77)
53 3jsv_C NF-kappa-B essential mo 77.9 18 0.0006 28.4 9.1 40 114-153 50-89 (94)
54 1hjb_A Ccaat/enhancer binding 77.6 8.2 0.00028 29.6 7.1 53 108-160 26-78 (87)
55 2d1l_A Metastasis suppressor p 77.6 40 0.0014 30.2 13.1 59 158-218 176-234 (253)
56 3hnw_A Uncharacterized protein 76.6 29 0.00098 28.4 10.6 47 158-204 84-130 (138)
57 3fpp_A Macrolide-specific effl 76.6 14 0.00047 32.5 9.3 62 116-177 67-128 (341)
58 1m1j_C Fibrinogen gamma chain; 76.2 27 0.00092 33.4 11.8 32 106-137 36-67 (409)
59 1f5n_A Interferon-induced guan 76.1 52 0.0018 32.7 14.2 90 37-132 459-551 (592)
60 1joc_A EEA1, early endosomal a 75.0 15 0.00052 29.2 8.3 43 95-140 5-47 (125)
61 1go4_E MAD1 (mitotic arrest de 75.0 11 0.00038 29.7 7.3 21 198-218 75-95 (100)
62 1m1j_B Fibrinogen beta chain; 74.7 54 0.0018 32.0 13.6 11 62-72 82-92 (464)
63 3m91_A Proteasome-associated A 74.5 2 7E-05 30.1 2.7 43 40-82 8-50 (51)
64 2efk_A CDC42-interacting prote 74.5 41 0.0014 28.9 16.8 19 53-71 74-92 (301)
65 1gu4_A CAAT/enhancer binding p 74.1 9.3 0.00032 28.7 6.4 52 108-159 26-77 (78)
66 1jcd_A Major outer membrane li 74.1 7.5 0.00026 27.3 5.5 29 128-156 7-35 (52)
67 3l4f_A RHO guanine nucleotide 73.2 9.6 0.00033 27.8 6.0 41 158-205 9-49 (61)
68 2e7s_A RAB guanine nucleotide 73.0 3.8 0.00013 34.0 4.3 13 207-219 105-117 (135)
69 2zqm_A Prefoldin beta subunit 71.8 21 0.00073 27.0 8.2 22 101-122 27-48 (117)
70 3s4r_A Vimentin; alpha-helix, 71.8 23 0.00079 27.0 8.3 16 136-151 60-75 (93)
71 4dci_A Uncharacterized protein 71.2 22 0.00075 29.8 8.7 36 159-194 69-104 (150)
72 2zqm_A Prefoldin beta subunit 70.4 26 0.00088 26.5 8.4 25 192-216 85-109 (117)
73 1wle_A Seryl-tRNA synthetase; 70.3 52 0.0018 32.1 12.4 27 118-144 77-103 (501)
74 3a7p_A Autophagy protein 16; c 68.9 52 0.0018 27.7 12.5 50 158-213 98-147 (152)
75 2jee_A YIIU; FTSZ, septum, coi 68.7 36 0.0012 25.9 8.9 45 177-221 27-71 (81)
76 3tnu_A Keratin, type I cytoske 68.4 43 0.0015 26.6 12.1 20 162-181 83-102 (131)
77 1gk4_A Vimentin; intermediate 68.1 34 0.0012 25.4 10.5 28 81-108 13-40 (84)
78 3swk_A Vimentin; cytoskeleton, 67.8 21 0.00071 26.9 7.2 54 136-206 4-57 (86)
79 1vcs_A Vesicle transport throu 67.3 40 0.0014 25.8 9.3 25 133-157 68-92 (102)
80 3kqg_A Langerin, C-type lectin 67.2 6.3 0.00021 31.6 4.5 36 137-172 4-39 (182)
81 1uix_A RHO-associated kinase; 67.1 26 0.00087 26.2 7.4 57 123-195 2-58 (71)
82 1s94_A S-syntaxin; three helix 67.1 51 0.0017 27.0 11.0 115 68-198 42-166 (180)
83 1deq_A Fibrinogen (alpha chain 66.6 65 0.0022 30.9 11.9 33 84-116 78-110 (390)
84 3lay_A Zinc resistance-associa 65.4 34 0.0012 29.1 8.8 21 158-178 87-107 (175)
85 1use_A VAsp, vasodilator-stimu 64.7 12 0.00041 25.7 4.7 27 146-174 7-33 (45)
86 3mq7_A Bone marrow stromal ant 64.4 57 0.0019 26.6 12.2 13 203-215 90-102 (121)
87 2no2_A HIP-I, huntingtin-inter 64.4 50 0.0017 25.9 14.4 28 103-130 46-73 (107)
88 3a7p_A Autophagy protein 16; c 63.8 64 0.0022 27.2 10.1 35 112-146 97-131 (152)
89 1g6u_A Domain swapped dimer; d 63.8 21 0.00072 24.3 5.8 45 158-210 2-46 (48)
90 2xnx_M M protein, M1-BC1; cell 63.6 3.5 0.00012 34.7 2.3 37 122-158 98-134 (146)
91 3tnu_B Keratin, type II cytosk 63.6 53 0.0018 25.9 13.6 21 161-181 80-100 (129)
92 3okq_A BUD site selection prot 63.5 64 0.0022 26.9 13.4 95 123-217 19-119 (141)
93 1fxk_C Protein (prefoldin); ar 63.2 47 0.0016 25.9 8.8 44 126-169 2-45 (133)
94 2eqb_B RAB guanine nucleotide 62.4 45 0.0015 26.2 8.3 36 115-150 2-37 (97)
95 2ke4_A CDC42-interacting prote 61.9 13 0.00046 28.9 5.2 19 197-215 61-79 (98)
96 2qyw_A Vesicle transport throu 61.6 52 0.0018 25.2 9.3 36 120-155 65-101 (102)
97 1t2k_D Cyclic-AMP-dependent tr 61.4 38 0.0013 23.5 7.2 35 117-151 21-55 (61)
98 2js5_A Uncharacterized protein 61.1 26 0.00088 26.1 6.4 58 119-179 4-61 (71)
99 2yy0_A C-MYC-binding protein; 61.1 12 0.00041 26.1 4.4 25 114-138 22-46 (53)
100 3m9b_A Proteasome-associated A 61.1 4.9 0.00017 36.5 2.9 44 40-83 53-96 (251)
101 3mov_A Lamin-B1; LMNB1, B-type 61.0 44 0.0015 25.6 8.0 29 135-163 47-75 (95)
102 3csx_A Putative uncharacterize 60.3 25 0.00084 26.9 6.3 59 119-180 16-74 (81)
103 1ci6_A Transcription factor AT 60.2 41 0.0014 23.8 7.2 41 111-151 16-56 (63)
104 3s4r_A Vimentin; alpha-helix, 59.4 56 0.0019 24.8 10.7 7 101-107 23-29 (93)
105 1s94_A S-syntaxin; three helix 59.3 59 0.002 26.6 9.1 25 191-215 126-150 (180)
106 2j69_A Bacterial dynamin-like 58.0 1.2E+02 0.0042 30.1 12.7 59 158-216 632-690 (695)
107 3iv1_A Tumor susceptibility ge 57.3 60 0.002 24.5 9.0 41 115-155 15-58 (78)
108 1ez3_A Syntaxin-1A; three heli 56.8 62 0.0021 24.6 10.9 19 114-132 46-64 (127)
109 2iub_A CORA, divalent cation t 56.6 90 0.0031 28.3 10.7 13 226-238 320-333 (363)
110 4gkw_A Spindle assembly abnorm 56.5 88 0.003 26.2 18.0 38 154-191 96-140 (167)
111 2dq0_A Seryl-tRNA synthetase; 56.2 41 0.0014 32.2 8.6 19 123-141 43-61 (455)
112 1y1u_A Signal transducer and a 56.2 73 0.0025 31.9 10.6 14 163-176 43-56 (585)
113 2w83_C C-JUN-amino-terminal ki 55.3 65 0.0022 24.4 8.2 56 114-179 5-60 (77)
114 3qne_A Seryl-tRNA synthetase, 54.7 45 0.0015 32.5 8.7 21 121-141 43-63 (485)
115 3c98_B Syntaxin-1A; protein co 54.7 51 0.0017 27.4 8.1 23 115-137 82-104 (279)
116 3bas_A Myosin heavy chain, str 54.4 66 0.0022 24.1 10.3 45 93-140 13-57 (89)
117 2yy0_A C-MYC-binding protein; 54.3 25 0.00087 24.4 5.1 22 129-150 23-44 (53)
118 3viq_A SWI5-dependent recombin 54.0 20 0.00069 28.9 5.2 35 158-192 9-43 (122)
119 2iaz_A Hypothetical protein SP 53.9 69 0.0024 24.2 8.6 54 96-158 2-55 (113)
120 1hjb_A Ccaat/enhancer binding 53.9 47 0.0016 25.3 7.0 37 141-180 38-74 (87)
121 3s9g_A Protein hexim1; cyclin 53.8 81 0.0028 25.0 8.9 23 156-178 65-87 (104)
122 2wt7_A Proto-oncogene protein 53.8 54 0.0019 23.0 7.0 16 162-177 43-58 (63)
123 4emc_A Monopolin complex subun 53.8 48 0.0016 28.9 7.8 48 115-179 10-57 (190)
124 2i1j_A Moesin; FERM, coiled-co 53.5 11 0.00037 37.2 4.2 28 61-88 296-323 (575)
125 3oa7_A Head morphogenesis prot 52.8 29 0.001 30.6 6.4 13 190-202 108-120 (206)
126 2nrj_A HBL B protein; enteroto 52.4 1.4E+02 0.0049 27.4 11.5 122 63-184 124-278 (346)
127 3haj_A Human pacsin2 F-BAR; pa 52.1 1.6E+02 0.0054 27.8 16.0 22 185-206 225-246 (486)
128 4dyl_A Tyrosine-protein kinase 51.7 1.5E+02 0.0051 27.4 13.6 19 188-206 208-226 (406)
129 1jnm_A Proto-oncogene C-JUN; B 51.3 23 0.00079 24.8 4.6 34 117-150 21-54 (62)
130 1ses_A Seryl-tRNA synthetase; 50.9 46 0.0016 31.5 7.9 19 122-140 39-57 (421)
131 3vp9_A General transcriptional 50.6 42 0.0014 26.1 6.3 40 113-152 16-56 (92)
132 1m1j_C Fibrinogen gamma chain; 50.4 1.3E+02 0.0044 28.7 11.0 31 189-219 103-133 (409)
133 1gu4_A CAAT/enhancer binding p 50.1 57 0.002 24.3 6.8 38 139-179 36-73 (78)
134 3fx0_A NF-kappa-B essential mo 49.8 43 0.0015 26.3 6.3 41 140-180 39-79 (96)
135 3q8t_A Beclin-1; autophagy, AT 49.6 85 0.0029 24.0 14.6 38 171-211 57-94 (96)
136 1x8y_A Lamin A/C; structural p 49.6 74 0.0025 23.7 7.5 24 139-162 42-65 (86)
137 4dzn_A Coiled-coil peptide CC- 49.5 25 0.00084 22.3 3.9 13 160-172 6-18 (33)
138 3u1c_A Tropomyosin alpha-1 cha 49.4 86 0.0029 24.0 13.2 58 119-186 24-81 (101)
139 3ibp_A Chromosome partition pr 49.4 1E+02 0.0035 28.6 9.8 96 61-161 16-113 (302)
140 3r4h_A Coiled coil helix CC-TE 49.1 21 0.0007 22.8 3.5 25 65-89 5-29 (34)
141 3htk_A Structural maintenance 49.0 60 0.002 22.0 8.2 19 163-181 40-58 (60)
142 1m1j_A Fibrinogen alpha subuni 49.0 2.1E+02 0.007 28.2 14.2 48 170-217 111-158 (491)
143 3fpp_A Macrolide-specific effl 48.6 50 0.0017 28.8 7.4 19 162-180 134-152 (341)
144 3vp9_A General transcriptional 48.5 15 0.00052 28.6 3.5 60 158-218 16-88 (92)
145 2d4x_A Flagellar HOOK-associat 48.2 90 0.0031 26.5 8.8 74 102-175 10-86 (248)
146 3kqg_A Langerin, C-type lectin 48.1 17 0.00058 29.0 3.9 19 183-201 67-85 (182)
147 3hhm_B NISH2 P85alpha; PI3KCA, 48.0 1.8E+02 0.006 27.2 13.4 56 119-177 199-254 (373)
148 2wt7_A Proto-oncogene protein 47.8 69 0.0024 22.4 7.4 36 117-152 22-57 (63)
149 4dk0_A Putative MACA; alpha-ha 47.7 84 0.0029 27.6 8.8 18 163-180 136-153 (369)
150 1abz_A Alpha-T-alpha, ATA; de 47.7 7.4 0.00025 25.6 1.3 16 74-89 8-23 (40)
151 3lss_A Seryl-tRNA synthetase; 47.5 1.4E+02 0.0046 29.1 10.8 25 119-143 45-69 (484)
152 1go4_E MAD1 (mitotic arrest de 47.2 1E+02 0.0035 24.2 8.6 62 118-179 12-91 (100)
153 2a3d_A Protein (de novo three- 46.9 56 0.0019 23.8 6.1 56 66-129 6-69 (73)
154 3oja_A Leucine-rich immune mol 46.9 1.8E+02 0.006 26.9 13.8 31 165-195 419-449 (487)
155 4ev6_A Magnesium transport pro 46.6 88 0.003 28.0 8.8 29 85-113 162-190 (339)
156 1wt6_A Myotonin-protein kinase 46.5 95 0.0033 23.6 8.7 6 124-129 20-25 (81)
157 3mov_A Lamin-B1; LMNB1, B-type 46.2 63 0.0021 24.8 6.7 31 78-108 21-51 (95)
158 1ci6_A Transcription factor AT 45.9 59 0.002 22.9 6.1 19 160-178 41-59 (63)
159 2ve7_A Kinetochore protein HEC 45.7 23 0.00079 32.3 4.9 46 152-200 181-226 (315)
160 2dq0_A Seryl-tRNA synthetase; 45.3 1E+02 0.0035 29.4 9.5 35 118-152 31-65 (455)
161 2xdj_A Uncharacterized protein 45.3 95 0.0033 23.3 9.0 30 153-182 17-46 (83)
162 4b6x_A AVRRPS4, avirulence pro 44.4 70 0.0024 24.6 6.5 34 141-179 38-71 (90)
163 1twf_C B44.5, DNA-directed RNA 44.2 9.5 0.00032 35.3 2.0 15 238-253 304-318 (318)
164 2lw1_A ABC transporter ATP-bin 43.0 48 0.0016 24.6 5.5 55 117-175 21-75 (89)
165 3qne_A Seryl-tRNA synthetase, 42.9 1.3E+02 0.0046 29.2 10.0 32 118-149 33-64 (485)
166 3a7o_A Autophagy protein 16; c 42.8 46 0.0016 25.0 5.2 53 56-129 12-64 (75)
167 3l4q_C Phosphatidylinositol 3- 42.8 1.5E+02 0.0051 25.2 9.1 23 67-89 36-58 (170)
168 3pwx_A Putative flagellar HOOK 42.5 1.5E+02 0.0052 25.5 9.4 73 102-174 12-87 (239)
169 3i2w_A Syndapin, LD46328P; EFC 42.4 1.6E+02 0.0056 25.2 11.5 41 115-155 64-105 (290)
170 3iv1_A Tumor susceptibility ge 42.1 1.1E+02 0.0037 23.1 8.6 52 163-214 18-69 (78)
171 2efk_A CDC42-interacting prote 42.1 1.6E+02 0.0055 25.0 18.9 75 115-189 66-142 (301)
172 2a3d_A Protein (de novo three- 41.7 97 0.0033 22.6 6.7 35 142-176 29-71 (73)
173 3sjb_C Golgi to ER traffic pro 41.5 50 0.0017 25.7 5.4 35 146-180 46-80 (93)
174 2oeq_A Protein of unknown func 41.4 62 0.0021 25.1 6.1 100 97-210 6-106 (122)
175 2v0o_A FCHO2, FCH domain only 41.3 1.6E+02 0.0054 24.7 16.6 88 64-155 20-110 (276)
176 2nrj_A HBL B protein; enteroto 40.9 59 0.002 29.9 6.9 60 114-173 126-193 (346)
177 3m9b_A Proteasome-associated A 40.7 27 0.00094 31.6 4.4 16 115-130 79-94 (251)
178 3ghg_B Fibrinogen beta chain; 40.7 2.7E+02 0.0092 27.2 12.7 30 189-218 161-190 (461)
179 3mq9_A Bone marrow stromal ant 40.6 2.2E+02 0.0074 26.1 12.1 20 157-176 451-470 (471)
180 3u59_A Tropomyosin beta chain; 40.6 1.2E+02 0.004 23.0 13.2 24 162-185 57-80 (101)
181 1cii_A Colicin IA; bacteriocin 40.4 2.9E+02 0.01 27.5 14.2 33 117-149 362-394 (602)
182 1gd2_E Transcription factor PA 40.3 61 0.0021 23.7 5.5 20 88-107 23-42 (70)
183 2pih_A Protein YMCA; regulate 40.2 1.5E+02 0.005 24.0 14.8 106 96-215 6-113 (151)
184 1fxk_A Prefoldin; archaeal pro 40.1 1.1E+02 0.0038 22.5 12.0 22 193-214 81-102 (107)
185 1bg1_A Protein (transcription 39.9 2.4E+02 0.0083 28.3 11.5 84 66-153 24-107 (596)
186 2xv5_A Lamin-A/C; structural p 39.9 1.1E+02 0.0038 22.5 7.3 37 126-162 6-42 (74)
187 4etp_A Kinesin-like protein KA 39.6 94 0.0032 29.1 8.1 44 128-171 13-56 (403)
188 2f1m_A Acriflavine resistance 39.5 1.6E+02 0.0055 24.8 9.0 18 205-222 119-136 (277)
189 4e61_A Protein BIM1; EB1-like 39.5 1E+02 0.0035 24.5 7.1 12 142-153 7-18 (106)
190 3v47_C Flagellin; innate immun 38.5 1.2E+02 0.004 29.3 8.7 77 101-177 8-87 (425)
191 2efl_A Formin-binding protein 38.1 1.8E+02 0.0063 24.6 15.7 20 187-206 215-234 (305)
192 4emc_A Monopolin complex subun 38.1 22 0.00074 31.1 3.2 46 37-89 9-54 (190)
193 3lnr_A Aerotaxis transducer AE 38.1 1.6E+02 0.0056 24.0 10.3 74 143-216 53-130 (175)
194 1wle_A Seryl-tRNA synthetase; 37.4 2.7E+02 0.0093 27.0 11.2 33 118-150 70-102 (501)
195 3ni0_A Bone marrow stromal ant 37.3 1.5E+02 0.0051 23.3 9.6 24 155-178 66-89 (99)
196 1sjj_A Actinin; 3-helix bundle 37.1 1.7E+02 0.0058 29.1 9.9 34 60-93 409-442 (863)
197 3ajw_A Flagellar FLIJ protein; 36.5 1.4E+02 0.005 22.9 12.3 44 155-198 73-116 (150)
198 1gd2_E Transcription factor PA 36.3 68 0.0023 23.5 5.2 37 135-174 32-68 (70)
199 1s1c_X RHO-associated, coiled- 36.3 1.3E+02 0.0044 22.3 6.8 30 123-152 4-33 (71)
200 1wlx_A Alpha-actinin 4; three- 36.2 1.3E+02 0.0045 24.4 7.5 53 108-160 49-115 (129)
201 1lwu_C Fibrinogen gamma chain; 35.5 79 0.0027 29.3 6.7 13 96-108 7-19 (323)
202 2xv5_A Lamin-A/C; structural p 35.1 1.3E+02 0.0045 22.0 7.9 24 131-154 4-27 (74)
203 3cl3_D NF-kappa-B essential mo 34.8 42 0.0014 27.7 4.2 70 116-185 7-84 (130)
204 1t3j_A Mitofusin 1; coiled coi 34.4 1.4E+02 0.0047 23.3 7.0 23 86-108 46-68 (96)
205 1t3j_A Mitofusin 1; coiled coi 33.7 1.6E+02 0.0054 23.0 7.2 46 78-123 31-76 (96)
206 3u59_A Tropomyosin beta chain; 33.6 1.5E+02 0.0053 22.3 11.6 8 101-108 23-30 (101)
207 3he5_B Synzip2; heterodimeric 33.6 1.2E+02 0.004 20.9 5.7 35 182-216 15-49 (52)
208 1m1j_B Fibrinogen beta chain; 33.6 3.4E+02 0.012 26.3 16.1 16 115-130 97-112 (464)
209 3q8t_A Beclin-1; autophagy, AT 33.3 1.6E+02 0.0054 22.4 11.2 21 160-180 71-91 (96)
210 2dgc_A Protein (GCN4); basic d 33.1 84 0.0029 22.3 5.2 10 162-171 50-59 (63)
211 2bsg_A Fibritin; viral protein 32.8 3.1E+02 0.011 27.0 10.6 143 64-217 49-224 (487)
212 3k8w_A Flagellin homolog; flag 32.7 2.8E+02 0.0095 25.8 9.9 75 101-175 29-106 (326)
213 3ra3_B P2F; coiled coil domain 32.5 26 0.00087 21.5 1.9 21 61-81 6-26 (28)
214 2w6b_A RHO guanine nucleotide 32.3 70 0.0024 22.8 4.5 28 58-85 6-33 (56)
215 2wt7_B Transcription factor MA 31.6 1.2E+02 0.0041 23.3 6.2 11 163-173 76-86 (90)
216 3tul_A Cell invasion protein S 31.1 83 0.0028 26.6 5.5 40 140-179 77-123 (158)
217 1jnm_A Proto-oncogene C-JUN; B 30.5 1.2E+02 0.0041 21.0 5.6 17 161-177 41-57 (62)
218 2dq3_A Seryl-tRNA synthetase; 30.3 51 0.0018 31.1 4.7 20 122-141 41-60 (425)
219 2y39_A Nickel and cobalt resis 30.3 94 0.0032 25.1 5.6 44 114-157 41-84 (118)
220 2zvf_A Alanyl-tRNA synthetase; 30.2 85 0.0029 25.1 5.4 30 188-217 29-58 (171)
221 1t2k_D Cyclic-AMP-dependent tr 30.2 1.3E+02 0.0046 20.6 7.0 18 160-177 40-57 (61)
222 1ucu_A Phase 1 flagellin; flag 30.1 2.9E+02 0.0099 26.5 10.0 79 100-178 47-128 (494)
223 1f5n_A Interferon-induced guan 29.8 2.6E+02 0.009 27.6 9.9 45 162-206 500-545 (592)
224 1xaw_A Occludin; coiled-coil, 29.7 2.1E+02 0.0073 23.6 7.8 39 137-175 64-102 (140)
225 1a93_B MAX protein, coiled coi 29.4 55 0.0019 21.2 3.2 30 168-197 5-34 (34)
226 1yhn_B RILP, RAB interacting l 29.3 1.7E+02 0.0057 21.4 6.5 52 126-179 4-58 (65)
227 3u06_A Protein claret segregat 28.9 1.8E+02 0.0061 27.4 8.1 35 114-148 6-40 (412)
228 3vlc_E Golgi to ER traffic pro 28.6 18 0.00063 28.3 1.1 34 147-180 54-87 (94)
229 2jn6_A Protein CGL2762, transp 28.5 12 0.00039 27.3 -0.1 30 160-189 63-92 (97)
230 2eqb_B RAB guanine nucleotide 28.1 2.1E+02 0.0073 22.3 12.6 17 67-83 3-19 (97)
231 3u1c_A Tropomyosin alpha-1 cha 28.0 2E+02 0.0068 21.9 13.2 46 101-149 23-68 (101)
232 2p22_A Suppressor protein STP2 28.0 2.8E+02 0.0095 23.5 9.5 42 111-152 49-90 (174)
233 3pe0_A Plectin; cytoskeleton, 27.9 3.1E+02 0.011 24.1 13.1 28 188-215 154-181 (283)
234 3iox_A AGI/II, PA; alpha helix 27.6 4.5E+02 0.016 25.9 14.2 98 116-219 7-108 (497)
235 1hci_A Alpha-actinin 2; triple 27.2 3.5E+02 0.012 24.4 16.4 34 59-92 169-202 (476)
236 3trt_A Vimentin; cytoskeleton, 27.0 1.7E+02 0.0058 20.7 8.9 12 162-173 62-73 (77)
237 3q0x_A Centriole protein; cent 26.7 1.3E+02 0.0045 26.6 6.3 37 115-151 175-211 (228)
238 1fzc_C Fibrin; blood coagulati 26.4 80 0.0027 29.2 5.1 29 99-130 2-30 (319)
239 1yvl_A Signal transducer and a 26.2 4.9E+02 0.017 26.5 11.2 99 66-175 148-246 (683)
240 1cii_A Colicin IA; bacteriocin 25.6 5.1E+02 0.017 25.8 10.8 68 108-178 346-413 (602)
241 1fxk_C Protein (prefoldin); ar 25.6 2.3E+02 0.0079 21.8 10.5 42 135-176 4-45 (133)
242 3oja_A Leucine-rich immune mol 25.6 3.9E+02 0.013 24.5 16.7 7 186-192 472-478 (487)
243 2lf0_A Uncharacterized protein 25.4 1.5E+02 0.0052 24.1 5.9 44 139-182 17-62 (123)
244 2oee_A UPF0342 protein YHEA; M 25.2 1.5E+02 0.0052 22.3 5.8 31 98-129 4-34 (117)
245 2rjz_A PILO protein; structura 25.1 1.8E+02 0.0061 23.4 6.5 36 144-179 3-38 (147)
246 3u06_A Protein claret segregat 24.8 2.3E+02 0.008 26.6 8.1 29 123-151 8-36 (412)
247 1ic2_A Tropomyosin alpha chain 24.7 2E+02 0.0069 20.8 9.1 33 115-147 3-35 (81)
248 3nmd_A CGMP dependent protein 24.5 2.2E+02 0.0074 21.1 7.4 21 159-179 50-70 (72)
249 2ocy_A RAB guanine nucleotide 24.4 3.1E+02 0.011 22.9 17.3 134 64-217 15-148 (154)
250 2dq3_A Seryl-tRNA synthetase; 24.1 94 0.0032 29.3 5.3 31 118-148 30-60 (425)
251 3i9w_A Sensor protein TORS; st 24.1 4E+02 0.014 24.1 9.7 124 95-230 21-145 (290)
252 3haj_A Human pacsin2 F-BAR; pa 24.0 4.5E+02 0.015 24.6 21.1 71 115-185 78-158 (486)
253 2ve7_C Kinetochore protein NUF 24.0 57 0.002 28.8 3.5 14 115-128 152-165 (250)
254 3uul_A Utrophin; spectrin repe 23.9 2E+02 0.007 20.6 9.8 43 98-140 13-55 (118)
255 1oxz_A ADP-ribosylation factor 23.7 3.4E+02 0.012 23.1 12.9 106 102-217 34-143 (186)
256 2i1j_A Moesin; FERM, coiled-co 23.7 89 0.003 30.7 5.1 32 142-173 366-397 (575)
257 2q6q_A Spindle POLE BODY compo 23.6 2E+02 0.0068 21.4 5.8 44 64-111 5-48 (74)
258 1io1_A Phase 1 flagellin; beta 23.4 3E+02 0.01 25.7 8.5 73 108-180 3-78 (398)
259 1lwu_C Fibrinogen gamma chain; 23.4 1.8E+02 0.0063 26.8 7.0 7 101-107 5-11 (323)
260 2fcw_A Alpha-2-macroglobulin r 23.2 2.9E+02 0.0098 22.0 11.5 26 193-218 76-101 (109)
261 2efl_A Formin-binding protein 23.1 3.4E+02 0.012 22.9 19.4 68 118-185 76-145 (305)
262 3fhn_A Protein transport prote 23.1 3.5E+02 0.012 27.6 9.5 48 118-165 10-57 (706)
263 1bb1_B Designed, thermostable 23.0 1E+02 0.0036 19.7 3.7 25 65-89 5-29 (36)
264 1fzc_A Fibrin; blood coagulati 22.9 1.4E+02 0.0048 23.0 5.0 42 174-215 4-45 (87)
265 3uun_A Dystrophin; triple heli 22.9 2.1E+02 0.0072 20.4 10.5 38 101-138 16-53 (119)
266 2dgc_A Protein (GCN4); basic d 22.9 1.7E+02 0.0057 20.7 5.2 38 111-148 23-60 (63)
267 2ve7_C Kinetochore protein NUF 22.7 90 0.0031 27.6 4.6 14 204-217 189-202 (250)
268 3ghg_C Fibrinogen gamma chain; 22.4 5.2E+02 0.018 24.7 12.4 33 115-147 35-67 (411)
269 1cxz_B Protein (PKN); protein- 22.4 2.6E+02 0.0089 21.3 7.7 34 92-125 36-70 (86)
270 3fx7_A Putative uncharacterize 22.4 2.7E+02 0.0094 21.5 7.6 51 165-215 22-80 (94)
271 2b9c_A Striated-muscle alpha t 22.3 1.9E+02 0.0066 23.6 6.2 81 141-221 5-96 (147)
272 1naf_A ADP-ribosylation factor 21.8 3.5E+02 0.012 22.5 11.6 107 101-217 17-127 (158)
273 1ses_A Seryl-tRNA synthetase; 21.6 3.7E+02 0.013 25.2 8.8 26 190-215 70-95 (421)
274 3gp4_A Transcriptional regulat 21.5 3E+02 0.01 21.7 8.5 34 115-148 85-118 (142)
275 1ez3_A Syntaxin-1A; three heli 21.1 2.7E+02 0.0091 20.9 13.3 28 98-125 9-36 (127)
276 1bf5_A Signal transducer and a 21.1 6.3E+02 0.022 25.2 12.3 82 66-153 13-94 (575)
277 3viq_A SWI5-dependent recombin 21.0 1.1E+02 0.0036 24.6 4.3 22 126-147 44-65 (122)
278 2de0_X Alpha-(1,6)-fucosyltran 21.0 5.2E+02 0.018 25.1 9.9 45 36-81 21-67 (526)
279 1zxa_A CGMP-dependent protein 20.4 1.8E+02 0.0061 21.2 5.0 19 162-180 38-56 (67)
280 2qag_C Septin-7; cell cycle, c 20.3 22 0.00074 33.6 0.0 73 96-183 324-396 (418)
No 1
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.93 E-value=0.026 Score=59.72 Aligned_cols=122 Identities=11% Similarity=0.092 Sum_probs=44.1
Q ss_pred cccccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHH
Q 024699 54 ISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSS 133 (264)
Q Consensus 54 l~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~ 133 (264)
...|..|-..-..|++.|.....+...|...+..+....+.++-+| +.++...+....|+.++...+..|...
T Consensus 920 ~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L-------~~~l~~le~~~~e~~~~~~~v~~L~~e 992 (1080)
T 2dfs_A 920 KKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKL-------RSDVERLRMSEEEAKNATNRVLSLQEE 992 (1080)
T ss_dssp -------------------------------CHHHHHHHHHHHHHH-------HHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445444445555555444454444444444443334444444 333333333444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHhhhhhhh
Q 024699 134 RQELTTQIKGLTKDVNRLEAENKQL-IAMRADIDGIRSELVEARRAFEFE 182 (264)
Q Consensus 134 RQeL~~qvq~l~qeL~r~~ad~qqi-pal~aEie~lrqElqr~Raa~EyE 182 (264)
-.+|..+++.+.+|...++...+++ ..|...+..|..|.+.+|..++.-
T Consensus 993 ~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A 993 IAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555444444443333 244455666777777777665543
No 2
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.90 E-value=0.094 Score=46.37 Aligned_cols=120 Identities=13% Similarity=0.142 Sum_probs=74.7
Q ss_pred cccchHHHHHHHHhhHHHHHHHhhhhhHhhhh---hHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHH
Q 024699 60 AIDDNTHLQRELTASKDEIHRLGQIIPKLRAD---KEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQE 136 (264)
Q Consensus 60 LaathvaLrqeLaaaq~Elqrl~~~~~~l~ae---~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQe 136 (264)
|...-..|..+++..+..+..+...+.+++.+ .+..+-.+-.++.+.+..+-++-.- .|+..+..|+..+....+.
T Consensus 30 lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~-kE~~aL~kEie~~~~~i~~ 108 (256)
T 3na7_A 30 KRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSE-RELRSLNIEEDIAKERSNQ 108 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSS-SHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH-HHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555444444433 3466777777777777777655543 6788888888888877777
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhh
Q 024699 137 LTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEK 183 (264)
Q Consensus 137 L~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEK 183 (264)
|..++..+...+...+.++ ..+.++++.++.++...++.++-+-
T Consensus 109 lE~eile~~e~ie~~~~~l---~~~~~~l~~~~~~l~~~~~~~~~~~ 152 (256)
T 3na7_A 109 ANREIENLQNEIKRKSEKQ---EDLKKEMLELEKLALELESLVENEV 152 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777665554 3445556666666666665555443
No 3
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.81 E-value=0.069 Score=47.24 Aligned_cols=58 Identities=16% Similarity=0.284 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 024699 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELV 173 (264)
Q Consensus 115 ~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElq 173 (264)
.++.++..+..++.++...-.++.+++....+.|.... +++.+-+|..||+.+..++.
T Consensus 50 ~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~-~~kE~~aL~kEie~~~~~i~ 107 (256)
T 3na7_A 50 NLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK-SERELRSLNIEEDIAKERSN 107 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-SSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444443222 44444455555544444433
No 4
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.90 E-value=0.051 Score=51.88 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024699 192 QKQAMENNLISMAREIEKLRAELLNTER 219 (264)
Q Consensus 192 q~qaMEknlismarEvEKLRaElanae~ 219 (264)
+.+.|.+.+..+.+|+.++++|+...+.
T Consensus 552 ~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 552 QLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444455666666666655443
No 5
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.86 E-value=0.033 Score=58.94 Aligned_cols=82 Identities=15% Similarity=0.195 Sum_probs=38.9
Q ss_pred HHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 66 HLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLT 145 (264)
Q Consensus 66 aLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~ 145 (264)
.|+++|...+..+..+...+. +-+.++..|-+...+++.++. ..+.++..+..++..|....++|..+++.+.
T Consensus 861 ~L~~eL~el~~~L~~le~~l~----ele~~l~~Le~e~~~l~~~L~---~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele 933 (1184)
T 1i84_S 861 AKDEELQRTKERQQKAEAELK----ELEQKHTQLCEEKNLLQEKLQ---AETELYAEAEEMRVRLAAKKQELEEILHEME 933 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444433332 233344444444444444333 2334444445555555555555555555555
Q ss_pred HHHHHHHHh
Q 024699 146 KDVNRLEAE 154 (264)
Q Consensus 146 qeL~r~~ad 154 (264)
.++.....+
T Consensus 934 ~elee~ee~ 942 (1184)
T 1i84_S 934 ARIEEEEER 942 (1184)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 555444443
No 6
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=95.59 E-value=0.22 Score=39.88 Aligned_cols=48 Identities=21% Similarity=0.389 Sum_probs=39.1
Q ss_pred hhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 105 KLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (264)
Q Consensus 105 KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ 152 (264)
|.|.|+.....+..++.-++.++....-.|-+|-.+|++|+.||.=++
T Consensus 56 KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLK 103 (119)
T 3ol1_A 56 KLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666777788889999999999999999999999998887544
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.50 E-value=0.52 Score=55.31 Aligned_cols=59 Identities=10% Similarity=0.165 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024699 161 MRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTER 219 (264)
Q Consensus 161 l~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElanae~ 219 (264)
+++++..+..++..+.+....=++.=.+.-+.++.++.++-...+|.++|..|+..+++
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~ 2070 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKN 2070 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555554444444455555556666666666666666666555443
No 8
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.46 E-value=0.71 Score=39.66 Aligned_cols=33 Identities=30% Similarity=0.339 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHH
Q 024699 90 ADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRA 125 (264)
Q Consensus 90 ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~ra 125 (264)
+-.|..+|+|-+++..+++ ..+.|-+|+.++++
T Consensus 44 ~~~E~~~rELq~~~~~L~~---~k~~Leke~~~LQa 76 (168)
T 3o0z_A 44 SQLESLNRELQERNRILEN---SKSQTDKDYYQLQA 76 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 4445566666666666666 55555555555555
No 9
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=94.94 E-value=0.15 Score=38.90 Aligned_cols=79 Identities=18% Similarity=0.305 Sum_probs=60.4
Q ss_pred HHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 66 HLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLT 145 (264)
Q Consensus 66 aLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~ 145 (264)
-||+.|..+..|-.+|...+..++. .+-+=-.|.|.|+.....+-.|+.-++-++..+.-.|-+|-++|++|+
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~-------~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~ 76 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAE-------DIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3666666666665555555554442 222335688999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 024699 146 KDVNRL 151 (264)
Q Consensus 146 qeL~r~ 151 (264)
.||.=+
T Consensus 77 eEl~fL 82 (86)
T 3swk_A 77 EEIAFL 82 (86)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998643
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.93 E-value=0.54 Score=44.76 Aligned_cols=36 Identities=8% Similarity=0.195 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 024699 157 QLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQ 192 (264)
Q Consensus 157 qipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq 192 (264)
++-+.+.+++.+++|..+.+..++..|+.-.++-++
T Consensus 531 ~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e 566 (597)
T 3oja_B 531 EADAKQKETEDLEQENIALEKQLDNKRAKQAELRQE 566 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHH
Confidence 344455666666666666666666666655555444
No 11
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=93.93 E-value=2.9 Score=36.36 Aligned_cols=92 Identities=21% Similarity=0.277 Sum_probs=41.7
Q ss_pred HHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 68 QRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (264)
Q Consensus 68 rqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qe 147 (264)
++.+..++.|+.-+...-..+.+|-|.++-.+=.+...+.. ...-++.|+...+. ++.....+...++..|..+
T Consensus 23 ~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~---~~~~L~~E~e~~k~---K~~~~~~e~~~~~~~Lq~e 96 (189)
T 2v71_A 23 KQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQA---DNQRLKYEVEALKE---KLEHQYAQSYKQVSVLEDD 96 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555444444444443333 22333444444443 3333444444444444444
Q ss_pred HHHHHHhhhhhHHHHHHH
Q 024699 148 VNRLEAENKQLIAMRADI 165 (264)
Q Consensus 148 L~r~~ad~qqipal~aEi 165 (264)
+..++..+.++-.=..+|
T Consensus 97 l~~l~~~~~~l~~~ireL 114 (189)
T 2v71_A 97 LSQTRAIKEQLHKYVREL 114 (189)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444333333333
No 12
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.21 E-value=6.8 Score=46.30 Aligned_cols=50 Identities=10% Similarity=0.192 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 161 MRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKL 210 (264)
Q Consensus 161 l~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKL 210 (264)
++++|..+...|..+.+.|+.-.+-...+-.++..+++.|..-.+=|..|
T Consensus 2033 ~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL 2082 (3245)
T 3vkg_A 2033 IVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNL 2082 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444444433344444445555555544433333333
No 13
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=92.95 E-value=3 Score=33.48 Aligned_cols=110 Identities=21% Similarity=0.318 Sum_probs=53.2
Q ss_pred HHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 024699 95 HTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVE 174 (264)
Q Consensus 95 q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr 174 (264)
+|+.+-+.+.+|+..+...+..+.+|..- ..+|...+..|..++++-+.-++-+.--...+..-+.+++.--.|+
T Consensus 14 E~~~~~eel~~lke~l~k~e~~r~ele~~---~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el-- 88 (129)
T 2fxo_A 14 EMASMKEEFTRLKEALEKSEARRKELEEK---MVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEM-- 88 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--
Confidence 33444444444444444444444444322 2244444444444444444444434333344444444444333333
Q ss_pred HhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 175 ARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKL 210 (264)
Q Consensus 175 ~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKL 210 (264)
-+-++.+...+.++....+-|+.++-.+-.+|+-|
T Consensus 89 -~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 89 -NKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666667777777666666665555555544
No 14
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=92.39 E-value=3.4 Score=32.71 Aligned_cols=77 Identities=12% Similarity=0.208 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q 024699 117 RAEVVQLRAEVQKLNSSRQELTTQIKGLT-KDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQK 193 (264)
Q Consensus 117 k~El~q~raE~q~L~~~RQeL~~qvq~l~-qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~ 193 (264)
-+.|-..+.....+...+++|..+++.+. +-..+++..+.+|-.|+.||+.=..|++++..+++--...+..+..+.
T Consensus 14 ~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~ 91 (107)
T 2no2_A 14 TKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEF 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666677788888888765 334567888889999999999999999998887776666666666665
No 15
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=92.30 E-value=1.3 Score=44.08 Aligned_cols=41 Identities=17% Similarity=0.350 Sum_probs=19.4
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 174 EARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAEL 214 (264)
Q Consensus 174 r~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaEl 214 (264)
-+|.-|.|-|..=..++.+.+++++||.....+|.||..+|
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444555555555555555555554443
No 16
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=91.91 E-value=5.9 Score=34.46 Aligned_cols=80 Identities=19% Similarity=0.266 Sum_probs=65.2
Q ss_pred HHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHH
Q 024699 94 AHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE-NKQLIAMRADIDGIRSEL 172 (264)
Q Consensus 94 ~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad-~qqipal~aEie~lrqEl 172 (264)
...-++.+-|.-||+ .|-+||.++..-+..|...-..|..+++.....+..++++ +.++..|..||..++.+.
T Consensus 31 ~El~EFqesSrELE~------ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~ 104 (189)
T 2v71_A 31 DELVEFQEGSRELEA------ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIK 104 (189)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445577788889998 4567888888888888888888888888888888888877 667888889998888888
Q ss_pred HHHhhhh
Q 024699 173 VEARRAF 179 (264)
Q Consensus 173 qr~Raa~ 179 (264)
..+...|
T Consensus 105 ~~l~~~i 111 (189)
T 2v71_A 105 EQLHKYV 111 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777766
No 17
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=91.55 E-value=2.5 Score=34.11 Aligned_cols=81 Identities=16% Similarity=0.298 Sum_probs=47.3
Q ss_pred HHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 66 HLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLT 145 (264)
Q Consensus 66 aLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~ 145 (264)
-|+..|..|+.=|.-....|..++. .+.++++++-.+.-|++-+.--+.|-..=-+.|..+.++.+.|.
T Consensus 28 ~L~~~L~~AEeaL~~Kq~~idelk~-----------ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~ 96 (110)
T 2v4h_A 28 DLRQQLQQAEEALVAKQELIDKLKE-----------EAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQ 96 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHH
Confidence 4566677776666665566666653 33334455545555555555555555555566666666666666
Q ss_pred HHHHHHHHhhhh
Q 024699 146 KDVNRLEAENKQ 157 (264)
Q Consensus 146 qeL~r~~ad~qq 157 (264)
.+|..++..+++
T Consensus 97 ~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 97 EQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 666666655543
No 18
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=91.54 E-value=1.5 Score=35.35 Aligned_cols=87 Identities=17% Similarity=0.262 Sum_probs=52.0
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 65 THLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGL 144 (264)
Q Consensus 65 vaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l 144 (264)
+-|+.+|.....|-..|......-+.|.-.||-+|.+++..-|..|. .|+.-..|+..+++. .-+.|+..-..+
T Consensus 16 ~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~---~Lqq~fsq~q~~vq~---qL~~Lt~~Re~V 89 (112)
T 1x79_B 16 RQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLE---ELQQGLSQAKRDVQE---QMAVLMQSREQV 89 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 45677777777777777777777888888999999999999998443 455555555555443 223344444445
Q ss_pred HHHHHHHHHhhhh
Q 024699 145 TKDVNRLEAENKQ 157 (264)
Q Consensus 145 ~qeL~r~~ad~qq 157 (264)
..+|.+++.||..
T Consensus 90 ~~eL~rLQ~eNd~ 102 (112)
T 1x79_B 90 SEELVRLQKDNDS 102 (112)
T ss_dssp HTC----------
T ss_pred HHHHHHHHhhccc
Confidence 5555566655543
No 19
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=91.34 E-value=3.9 Score=32.92 Aligned_cols=94 Identities=18% Similarity=0.204 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q 024699 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQK 193 (264)
Q Consensus 114 e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~ 193 (264)
+.|-.++.|++-++.++...|++|....+.-+.|- ..||..|..-+++-.+.|.-+|.+|.--|. +-.+|+
T Consensus 9 ~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~------k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~---~vq~qL 79 (112)
T 1x79_B 9 KKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDS------SHQISALVLRAQASEILLEELQQGLSQAKR---DVQEQM 79 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 56777889999999999999999999866655553 367778888888888888888888865544 455667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 024699 194 QAMENNLISMAREIEKLRAELLN 216 (264)
Q Consensus 194 qaMEknlismarEvEKLRaElan 216 (264)
+..-..-=.+..|+.+|.+|=.+
T Consensus 80 ~~Lt~~Re~V~~eL~rLQ~eNd~ 102 (112)
T 1x79_B 80 AVLMQSREQVSEELVRLQKDNDS 102 (112)
T ss_dssp HHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHHHHHHHHHHhhccc
Confidence 77777777777777887776444
No 20
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=90.98 E-value=3.4 Score=33.00 Aligned_cols=23 Identities=35% Similarity=0.671 Sum_probs=12.6
Q ss_pred HHHHhhHHHHHHHhhhhhHhhhh
Q 024699 69 RELTASKDEIHRLGQIIPKLRAD 91 (264)
Q Consensus 69 qeLaaaq~Elqrl~~~~~~l~ae 91 (264)
.+|..++.||..|+..+.+++.|
T Consensus 29 ~~l~~~k~Ei~elrr~iq~L~~e 51 (129)
T 3tnu_B 29 DDLRNTKHEISEMNRMIQRLRAE 51 (129)
T ss_dssp -----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777776644
No 21
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=90.78 E-value=4.5 Score=33.19 Aligned_cols=64 Identities=11% Similarity=0.159 Sum_probs=34.4
Q ss_pred hHhhhhhHHHHHHHHHh--hhhhHHhhhhc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 86 PKLRADKEAHTRELFDR--GLKLEVELRAS---EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVN 149 (264)
Q Consensus 86 ~~l~ae~e~q~R~l~ek--~~KmEAelra~---e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~ 149 (264)
..+...-|.+|+++-.+ .-.+..+--++ -.+=.|+.+++.++..|...-+++..++..|..+|.
T Consensus 31 ~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~ 99 (138)
T 3hnw_A 31 QRVASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELI 99 (138)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444556677777744 66665543333 334467777776666655544444444444444443
No 22
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=90.49 E-value=1.2 Score=34.27 Aligned_cols=42 Identities=21% Similarity=0.288 Sum_probs=30.8
Q ss_pred hhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 104 LKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLT 145 (264)
Q Consensus 104 ~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~ 145 (264)
.-||+||++-..+..||-+++++.+.+.+--+|--.+-+.|.
T Consensus 17 SALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~ 58 (81)
T 1wt6_A 17 EALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLE 58 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999988887654444444444443
No 23
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=90.12 E-value=6.2 Score=31.57 Aligned_cols=88 Identities=19% Similarity=0.303 Sum_probs=70.9
Q ss_pred hhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Q 024699 103 GLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFE 182 (264)
Q Consensus 103 ~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyE 182 (264)
+.+-+.+++ .+..++.++...+.+....|++|..+...+.++...++..++.--.+-++.+.+..-|..-+..++..
T Consensus 8 ~~~~e~E~~---~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~ 84 (129)
T 2fxo_A 8 SAEREKEMA---SMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAK 84 (129)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 345556555 46789999999999999999999999999999999999999999999999999999888888776655
Q ss_pred hhhhHHHHHHH
Q 024699 183 KKANEEQIEQK 193 (264)
Q Consensus 183 Kk~~~e~~Eq~ 193 (264)
=+.-.+.++..
T Consensus 85 l~el~~rleee 95 (129)
T 2fxo_A 85 VKEMNKRLEDE 95 (129)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 24
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=89.45 E-value=6.3 Score=32.17 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=10.5
Q ss_pred HHHHHHhhHHHHHHHhh
Q 024699 67 LQRELTASKDEIHRLGQ 83 (264)
Q Consensus 67 LrqeLaaaq~Elqrl~~ 83 (264)
|+++|..+|+-|+.--+
T Consensus 30 Lq~qLTqAQe~l~~~ea 46 (121)
T 3mq7_A 30 LQQELTEAQKGFQDVEA 46 (121)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56667777666655543
No 25
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=89.26 E-value=7.1 Score=31.02 Aligned_cols=80 Identities=16% Similarity=0.371 Sum_probs=35.1
Q ss_pred HHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 024699 95 HTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVE 174 (264)
Q Consensus 95 q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr 174 (264)
|+-.+.--.++|+.++ +.++..+...+.-...-.+.|+.+-+.+..+.+++..+..-- -.|...|++|+.||.-
T Consensus 28 qid~~~~e~a~l~lel---dn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r---~dLE~~iesL~eEl~F 101 (119)
T 3ol1_A 28 QVDQLTNDKARVEVER---DNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLAR---LDLERKVESLQEEIAF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3444444445555533 233444444444444444555555555555555543221111 1233444555555544
Q ss_pred Hhhhhh
Q 024699 175 ARRAFE 180 (264)
Q Consensus 175 ~Raa~E 180 (264)
++.-+|
T Consensus 102 LKk~he 107 (119)
T 3ol1_A 102 LKKLHE 107 (119)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 443333
No 26
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=89.06 E-value=4.6 Score=32.36 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=8.4
Q ss_pred HHHHhhHHHHHHHhhhhhHhhhh
Q 024699 69 RELTASKDEIHRLGQIIPKLRAD 91 (264)
Q Consensus 69 qeLaaaq~Elqrl~~~~~~l~ae 91 (264)
.+|..++.||..|+..|.++.+|
T Consensus 31 ~~l~~~k~Ei~elrr~iq~L~~e 53 (131)
T 3tnu_A 31 ELVQSGKSEISELRRTMQNLEIE 53 (131)
T ss_dssp ----------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777776666666644
No 27
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=88.98 E-value=7.9 Score=31.18 Aligned_cols=64 Identities=19% Similarity=0.335 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 024699 138 TTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIE 208 (264)
Q Consensus 138 ~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvE 208 (264)
..++..|.+++.+...++-+||.|++.++--+.....-|+ ++-.+-+-...++..|-++-+++.
T Consensus 44 q~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERa-------dREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 44 QELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERH-------AREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchh-------hHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3445567778888888888888888887776655554444 444444444444444444444443
No 28
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=88.74 E-value=11 Score=32.37 Aligned_cols=118 Identities=14% Similarity=0.128 Sum_probs=82.3
Q ss_pred hhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 024699 82 GQIIPKLRADKEAHTRELFDRGLKLEVELRAS-EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIA 160 (264)
Q Consensus 82 ~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~-e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipa 160 (264)
.-....+++|.|. ..|..|.-+|++.. -.+-.-+.-++.=+..|...|.+|-.++..|...|..-+.+-.+...
T Consensus 16 ~E~n~kLk~EsE~-----~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se 90 (168)
T 3o0z_A 16 EEANDLLRTESDT-----AVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSE 90 (168)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345667777765 45667777877643 33333333344556677788888888888888888888888888777
Q ss_pred HHHHH----HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 024699 161 MRADI----DGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMA 204 (264)
Q Consensus 161 l~aEi----e~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisma 204 (264)
+.+|+ .+|..|+.+.+....-=...+-.+.|.+-.+||--.+|-
T Consensus 91 ~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 91 MIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 77765 778999999988776666667777777777887665554
No 29
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=88.69 E-value=4.7 Score=36.19 Aligned_cols=93 Identities=22% Similarity=0.279 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 024699 91 DKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRS 170 (264)
Q Consensus 91 e~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrq 170 (264)
.+--++|..+..+...|. ++.+.|.--..+..+|++|..-. =-+.++..|.+||.++.+++. .--+.|.++..
T Consensus 87 ~~~d~yR~~LK~IR~~E~---svqp~R~~R~~l~~~I~kLk~k~-P~s~kl~~LeqELvraEae~l---vaEAqL~n~kR 159 (234)
T 3plt_A 87 DKYDQYRVTLKSIRNIEA---SVQPSRDRKEKITDEIAHLKYKD-PQSTKIPVLEQELVRAEAESL---VAEAQLSNITR 159 (234)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHhccC-CCCchHHHHHHHHHHHHHHhh---HHHHHHHHhHH
Confidence 344678888888888887 66677777777778887776432 235667778888887777762 22356666665
Q ss_pred HHHHHhhhhhhhhhhhHHHHHH
Q 024699 171 ELVEARRAFEFEKKANEEQIEQ 192 (264)
Q Consensus 171 Elqr~Raa~EyEKk~~~e~~Eq 192 (264)
+.+|.+|.+.=++-.|.-|.
T Consensus 160 --~~lKEa~~~~f~Al~E~aEK 179 (234)
T 3plt_A 160 --EKLKAAYSYMFDSLRELSEK 179 (234)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHH
Confidence 45677777776666665554
No 30
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=88.32 E-value=1.9 Score=30.38 Aligned_cols=42 Identities=10% Similarity=0.214 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 024699 136 ELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (264)
Q Consensus 136 eL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~E 180 (264)
+|+.+|+.|+.++..+++|+ .+++.++...+.|-.|+-.-|+
T Consensus 8 ~Lss~V~~L~~kVdqLssdV---~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 8 QASSDAQTANAKADQASNDA---NAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhh
Confidence 34445555555554444433 3555666677777776655443
No 31
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=87.13 E-value=2.5 Score=34.22 Aligned_cols=44 Identities=16% Similarity=0.216 Sum_probs=33.2
Q ss_pred HHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhch
Q 024699 71 LTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASE 114 (264)
Q Consensus 71 Laaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e 114 (264)
|...+.||.+|...+..|+.|.-..|..|-.++..||+||-...
T Consensus 17 Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 17 IERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44466677777777777788888888899999999998765543
No 32
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=86.47 E-value=4.2 Score=31.95 Aligned_cols=78 Identities=17% Similarity=0.310 Sum_probs=35.9
Q ss_pred HHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 67 LQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTK 146 (264)
Q Consensus 67 LrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~q 146 (264)
|...|..|..=|......|..++ +.+.++++++-.+.-|++-+.--..|.+.=-+.|..+.++.+.|..
T Consensus 7 L~~~L~~aEeaL~~kq~~id~lk-----------e~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ 75 (94)
T 3jsv_C 7 LRQQLQQAEEALVAKQELIDKLK-----------EEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQE 75 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45555555555555444455544 3444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHhh
Q 024699 147 DVNRLEAEN 155 (264)
Q Consensus 147 eL~r~~ad~ 155 (264)
+|..++..+
T Consensus 76 ql~~lq~q~ 84 (94)
T 3jsv_C 76 QLEQLQREF 84 (94)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 444444433
No 33
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=86.02 E-value=3.3 Score=29.68 Aligned_cols=41 Identities=12% Similarity=0.328 Sum_probs=33.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH
Q 024699 156 KQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAM 196 (264)
Q Consensus 156 qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaM 196 (264)
.-+=+|+.|+..|+||..+...++|.|.+++-++-.=+.-|
T Consensus 10 DtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~ 50 (56)
T 2w6b_A 10 DTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKV 50 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34788999999999999999999999999987664444444
No 34
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=85.51 E-value=6.3 Score=31.85 Aligned_cols=82 Identities=23% Similarity=0.343 Sum_probs=39.9
Q ss_pred hhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 024699 88 LRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDG 167 (264)
Q Consensus 88 l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~ 167 (264)
...++|.+|..|+- .++.+|.|+..+..|.|..+ -.|.++|-.|..||.-.+...|+ ...|.+.
T Consensus 9 ~~d~rD~~Ie~Lkr----------eie~lk~ele~l~~E~q~~v---~ql~~~i~~Le~eL~e~r~~~q~---a~~e~e~ 72 (120)
T 3i00_A 9 NKDEKDHLIERLYR----------EISGLKAQLENMKTESQRVV---LQLKGHVSELEADLAEQQHLRQQ---AADDCEF 72 (120)
T ss_dssp -CCTHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred CCCcHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 45566665554432 23455666666666666533 24666666677777665543332 3455666
Q ss_pred HHHHHHHHh-----------hhhhhhhhh
Q 024699 168 IRSELVEAR-----------RAFEFEKKA 185 (264)
Q Consensus 168 lrqElqr~R-----------aa~EyEKk~ 185 (264)
|+.|+..++ ...|.|+|+
T Consensus 73 Lr~e~~~l~~~~~~~~~~q~~~~e~E~kA 101 (120)
T 3i00_A 73 LRAELDELRRQREDTEKAQRSLSEIERKA 101 (120)
T ss_dssp HHHHHHHHHTTCC----------------
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 666666553 245666665
No 35
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=85.37 E-value=9.5 Score=38.09 Aligned_cols=87 Identities=10% Similarity=0.168 Sum_probs=53.1
Q ss_pred HHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024699 78 IHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ 157 (264)
Q Consensus 78 lqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qq 157 (264)
|+.....+.+-..+.+..++.+++ .||..+.|..-.-.....+-+||.-+++.|..+|. ..+++
T Consensus 69 LKnqLEdlsKnsKdseqy~k~~~E-------------~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVd---nQlsn 132 (562)
T 3ghg_A 69 LKNSLFEYQKNNKDSHSLTTNIME-------------ILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVI---EKVQH 132 (562)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHH-------------TTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHhhchhHHHHHHHHHH-------------HHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 333333334445555555555544 34444444442222344444567777777776655 44588
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhh
Q 024699 158 LIAMRADIDGIRSELVEARRAFE 180 (264)
Q Consensus 158 ipal~aEie~lrqElqr~Raa~E 180 (264)
|-+|+.=|+.++.+|||+=.+|+
T Consensus 133 IrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 133 IQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887765
No 36
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=85.32 E-value=19 Score=35.59 Aligned_cols=57 Identities=21% Similarity=0.219 Sum_probs=44.9
Q ss_pred HHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHH
Q 024699 66 HLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRA 125 (264)
Q Consensus 66 aLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~ra 125 (264)
.-+-+|++-|.||-|+....++++++-|.-+.+.-.+...++|| .+++|+.=.++.+
T Consensus 6 ~yq~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~ae---NeaikkrNa~aka 62 (497)
T 3iox_A 6 DYQAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAE---NTAIKKRNADAKA 62 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH---HHHHHHHHHHHHH
Confidence 45678999999999999999999999999999998888888884 4445444443333
No 37
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=85.13 E-value=19 Score=34.58 Aligned_cols=34 Identities=0% Similarity=0.119 Sum_probs=24.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 024699 151 LEAENKQLIAMRADIDGIRSELVEARRAFEFEKK 184 (264)
Q Consensus 151 ~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk 184 (264)
+...++.|-.|+.-|+.++-++||+=.+|+|=+.
T Consensus 129 V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c~~ 162 (390)
T 1deq_A 129 VIEQVQRINLLQKNVRDQLVDMKRLEVDIDIKIR 162 (390)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445557777888888888888888888866554
No 38
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=84.75 E-value=11 Score=31.89 Aligned_cols=35 Identities=17% Similarity=0.310 Sum_probs=19.0
Q ss_pred HHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHH
Q 024699 99 LFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQE 136 (264)
Q Consensus 99 l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQe 136 (264)
-|++..-||-+| -..|.+|...+.-++.|...|.+
T Consensus 11 Ain~qs~LeD~L---~~~R~el~~~~~ri~~lE~~r~~ 45 (154)
T 2ocy_A 11 SVDKQSHLEEQL---NKSLKTIASQKAAIENYNQLKED 45 (154)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHhhccHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666532 34555666556555555555544
No 39
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=84.46 E-value=5.3 Score=34.08 Aligned_cols=26 Identities=15% Similarity=0.333 Sum_probs=15.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHhhh
Q 024699 153 AENKQLIAMRADIDGIRSELVEARRA 178 (264)
Q Consensus 153 ad~qqipal~aEie~lrqElqr~Raa 178 (264)
.|-.+|.+|..||..+++++...|..
T Consensus 110 ~DeakI~aL~~Ei~~Lr~qL~~~R~k 135 (175)
T 3lay_A 110 PDTAKINAVAKEMESLGQKLDEQRVK 135 (175)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666666555543
No 40
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=84.35 E-value=12 Score=28.60 Aligned_cols=84 Identities=11% Similarity=0.150 Sum_probs=54.5
Q ss_pred HHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 024699 67 LQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKL---NSSRQELTTQIKG 143 (264)
Q Consensus 67 LrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L---~~~RQeL~~qvq~ 143 (264)
..++...+..+|......++.+..|. -. ..+..+|..+- -...=|.|...|++.+ .+.|..+.++|..
T Consensus 6 YE~df~~~~~~i~~~l~~~~~~~ge~---Rk---~~i~~ie~~ld---EA~ell~qMelE~~~~~~p~~~R~~~~~klr~ 76 (97)
T 3onj_A 6 YESDFKTTLEQAKASLAEAPSQPLSQ---RN---TTLKHVEQQQD---ELFDLLDQMDVEVNNSIGDASERATYKAKLRE 76 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSCHHH---HH---HHHHHHHHHHH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccChHH---HH---HHHHHHHHHHH---HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45677777777777666666554331 11 11223333222 2223367888888888 2579999999999
Q ss_pred HHHHHHH-HHHhhhhhH
Q 024699 144 LTKDVNR-LEAENKQLI 159 (264)
Q Consensus 144 l~qeL~r-~~ad~qqip 159 (264)
..+||.+ ++.+++++-
T Consensus 77 Yk~dl~~~lk~~lk~l~ 93 (97)
T 3onj_A 77 WKKTIQSDIKRPLQSLV 93 (97)
T ss_dssp HHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 9999998 888887764
No 41
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=84.34 E-value=3.8 Score=31.29 Aligned_cols=42 Identities=17% Similarity=0.285 Sum_probs=32.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024699 113 SEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE 154 (264)
Q Consensus 113 ~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad 154 (264)
.+.++.++.+++.++.+|...+.++.+++..+.+.+.-+..+
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~ 46 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKA 46 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 345667778888888888888888888888888888777653
No 42
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=83.83 E-value=9.1 Score=29.24 Aligned_cols=60 Identities=23% Similarity=0.267 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024699 93 EAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN 155 (264)
Q Consensus 93 e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~ 155 (264)
|..|...+|.|..|.. -++.+|.+-..+..+++.+.+.|..|..+.+.|.+|..--+.-+
T Consensus 12 E~KIq~avdtI~lLqm---EieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 12 EAKVQQAIDTITLLQM---EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666665555 23567777777777777777777777777777777765444433
No 43
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=82.98 E-value=7.8 Score=30.97 Aligned_cols=57 Identities=14% Similarity=0.144 Sum_probs=45.3
Q ss_pred hhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 024699 110 LRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELV 173 (264)
Q Consensus 110 lra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElq 173 (264)
|-+..++.+||.+.+.++..|...-++|...++.|.+|=.=.-+-+ ..||-|.|+.+
T Consensus 3 ~~s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KL-------RdIEiLcQe~~ 59 (106)
T 4e61_A 3 LGSLVAIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKL-------RDIEILVHTTQ 59 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 3466788999999999999999999999999999988866666677 55666666544
No 44
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=82.23 E-value=3.2 Score=28.64 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 024699 142 KGLTKDVNRLEAENKQLIAMRADIDGIRSELVE 174 (264)
Q Consensus 142 q~l~qeL~r~~ad~qqipal~aEie~lrqElqr 174 (264)
+.+.+||++++-|. ||++++|+.+
T Consensus 18 ~E~RkElqK~K~EI---------IeAi~~El~~ 41 (45)
T 1use_A 18 EEVKKELQKVKEEI---------IEAFVQELRK 41 (45)
T ss_dssp HHHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHh
Confidence 34566777666666 5777777765
No 45
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=82.17 E-value=5.8 Score=28.98 Aligned_cols=44 Identities=27% Similarity=0.491 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024699 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL 158 (264)
Q Consensus 115 ~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqi 158 (264)
.+|.-|....+-||.|..+-..|+.++..|.++++++++++-++
T Consensus 17 evK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 17 ELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 46777888889999999999999999999999999999988544
No 46
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=81.96 E-value=1.8 Score=27.59 Aligned_cols=26 Identities=35% Similarity=0.378 Sum_probs=21.2
Q ss_pred hHHHHHHHHhhHHHHHHHhhhhhHhh
Q 024699 64 NTHLQRELTASKDEIHRLGQIIPKLR 89 (264)
Q Consensus 64 hvaLrqeLaaaq~Elqrl~~~~~~l~ 89 (264)
..+|+||+++.+.||-.|.--|..++
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalk 29 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALK 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999888887777665
No 47
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=81.75 E-value=13 Score=31.23 Aligned_cols=63 Identities=24% Similarity=0.248 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 024699 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (264)
Q Consensus 114 e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 179 (264)
..++.++...+...+.+.+.-+.|++++..++.+++++..++|-..+.+ .+|+.+|.-.|.+-
T Consensus 69 ~~l~rdleasr~akk~~ea~la~l~~~~~~LeAE~aKLeEekQIseASR---qgLrRDLeASReAK 131 (146)
T 2xnx_M 69 EAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQISDASR---QSLRRDLDASREAK 131 (146)
T ss_dssp TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTC---------------------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHHH
Confidence 4455666666666666666666677777888888888888887555554 67777887777775
No 48
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=81.35 E-value=15 Score=27.67 Aligned_cols=64 Identities=17% Similarity=0.225 Sum_probs=43.9
Q ss_pred hhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Q 024699 104 LKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARR 177 (264)
Q Consensus 104 ~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Ra 177 (264)
.+.|.+++ .+..|+.++...+.+....|.+|..+...+.++-..+... -+|++.++..|...+.
T Consensus 10 ~~~eeEm~---~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q-------l~eaEe~~~~L~~~K~ 73 (89)
T 3bas_A 10 ARQEEEMK---EQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS-------MKQLEDKVEELLSKNY 73 (89)
T ss_dssp CHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred chhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHH
Confidence 44455444 3667888888888888888888888888888887766655 3666666655544443
No 49
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=80.86 E-value=35 Score=31.52 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhh
Q 024699 143 GLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEK 183 (264)
Q Consensus 143 ~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEK 183 (264)
+|.++..+.+ +.|-.+..||-.+-++|+.+|+.|+.-|
T Consensus 433 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 433 SLDAEKAQGQ---KKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444322 4778888888888888888888887544
No 50
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=79.34 E-value=6.2 Score=35.06 Aligned_cols=92 Identities=12% Similarity=0.088 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH
Q 024699 117 RAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAM 196 (264)
Q Consensus 117 k~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaM 196 (264)
..++.++++++..+.+......+++....+++.|.+.-.++--.-+.+++..+.++..+++.+ +..
T Consensus 69 ~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~~--------------~~~ 134 (369)
T 4dk0_A 69 INTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNTAKATLNNAKAEM--------------DVV 134 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHHHHHHHHHHHHHHH--------------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHH--------------HHH
Confidence 344555555554444433334444444455555554433333333445555555555544432 223
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccc
Q 024699 197 ENNLISMAREIEKLRAELLNTERRAC 222 (264)
Q Consensus 197 EknlismarEvEKLRaElanae~ra~ 222 (264)
+.++-..-.+++.++..+.+..-+|.
T Consensus 135 ~~~l~~~~~~l~~a~~~l~~~~i~AP 160 (369)
T 4dk0_A 135 QENIKQAEIEVNTAETNLGYTKITSP 160 (369)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSSCCCS
T ss_pred HHHHHHHHHHHHHHHHHhhcCEEECC
Confidence 33344444456666666666666654
No 51
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=79.14 E-value=9.4 Score=30.38 Aligned_cols=50 Identities=30% Similarity=0.468 Sum_probs=28.7
Q ss_pred HHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024699 98 ELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ 157 (264)
Q Consensus 98 ~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qq 157 (264)
+||..-+.||. .+.++..|-.+|........++|+.|..+|.|+.++||.
T Consensus 34 ELIqEYl~LE~----------~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~ 83 (104)
T 3s9g_A 34 ELIKEYLELEK----------SLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQ 83 (104)
T ss_dssp HHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Confidence 45555666664 334444555555555566666666666666666666643
No 52
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=78.68 E-value=3.1 Score=31.66 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024699 130 LNSSRQELTTQIKGLTKD 147 (264)
Q Consensus 130 L~~~RQeL~~qvq~l~qe 147 (264)
|..++.+|-++|+.||-|
T Consensus 28 Lnvvk~DLI~rvdELt~E 45 (77)
T 2w83_C 28 LNIVKNDLIAKVDELTCE 45 (77)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhH
Confidence 333444444444444444
No 53
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=77.87 E-value=18 Score=28.39 Aligned_cols=40 Identities=23% Similarity=0.367 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEA 153 (264)
Q Consensus 114 e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~a 153 (264)
+.++.+-..=|++=.+|...+++|..++..|..++.++.+
T Consensus 50 ~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~~ 89 (94)
T 3jsv_C 50 DIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLKV 89 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444555555555555444444444443
No 54
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=77.59 E-value=8.2 Score=29.60 Aligned_cols=53 Identities=15% Similarity=0.285 Sum_probs=36.8
Q ss_pred HhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 024699 108 VELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIA 160 (264)
Q Consensus 108 Aelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipa 160 (264)
|==|+.+.=|.--......+..|...-..|..+|+.|++|+..+..=+.++|.
T Consensus 26 AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 26 AVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 44455666666667777777788888888888888888888877777777765
No 55
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=77.59 E-value=40 Score=30.25 Aligned_cols=59 Identities=17% Similarity=0.072 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024699 158 LIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTE 218 (264)
Q Consensus 158 ipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElanae 218 (264)
|.....|||...+ +-+|.|+-.|+.-|--+++..+..=+.=++|..|+..|+.=|.+-.
T Consensus 176 v~~~~~~le~~~~--~~~r~AL~EERrRycflv~~l~pv~~~e~~~~~e~~~l~~~l~~~~ 234 (253)
T 2d1l_A 176 VNDKYLLLEETEK--QAVRKALIEERGRFCTFISMLRPVIEEEISMLGEITHLQTISEDLK 234 (253)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444433 5678999999999999999999999999999999999998665543
No 56
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=76.63 E-value=29 Score=28.36 Aligned_cols=47 Identities=17% Similarity=0.240 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 024699 158 LIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMA 204 (264)
Q Consensus 158 ipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlisma 204 (264)
+..+..||..|++|+..++-.++.-++-..++.+..+..+++++.+-
T Consensus 84 l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 84 IENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777777777777777777777777776666666665543
No 57
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=76.59 E-value=14 Score=32.48 Aligned_cols=62 Identities=15% Similarity=0.236 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Q 024699 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARR 177 (264)
Q Consensus 116 lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Ra 177 (264)
+..++.++++++..+.+.-....+++.....++.|.+.=.++--.-+.++|..+.++..+++
T Consensus 67 ~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~~~a 128 (341)
T 3fpp_A 67 AENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQA 128 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHH
Confidence 34455555555544444444444444444455555444333333334455555555444443
No 58
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=76.24 E-value=27 Score=33.40 Aligned_cols=32 Identities=13% Similarity=0.103 Sum_probs=24.2
Q ss_pred hHHhhhhchhHHHHHHHHHHHHHHHHHHHHHH
Q 024699 106 LEVELRASEPVRAEVVQLRAEVQKLNSSRQEL 137 (264)
Q Consensus 106 mEAelra~e~lk~El~q~raE~q~L~~~RQeL 137 (264)
+..+|+..|.+-.||.++..+++.|...-|+.
T Consensus 36 V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 36 TDGELLEIEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777788888888888887777776
No 59
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=76.08 E-value=52 Score=32.66 Aligned_cols=90 Identities=13% Similarity=0.151 Sum_probs=61.1
Q ss_pred hhhHHHHHHHHHHhhhhcccccccccchHHHHHH---HHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhc
Q 024699 37 MTLEEEIEIQRREMHRIISENRHAIDDNTHLQRE---LTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRAS 113 (264)
Q Consensus 37 ~~LEe~l~~Q~~EiqrLl~dNqRLaathvaLrqe---Laaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~ 113 (264)
.+|.+.|......-..++--++.|.+.--.+..+ =.++++|.+.|.......+.--+.|-|.+=+.+..|+.
T Consensus 459 ~vl~~fl~~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~----- 533 (592)
T 1f5n_A 459 EILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTE----- 533 (592)
T ss_dssp HHHHHHHHHTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 7899999988888888887777776654344333 23567777777777777776667777777777777665
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 024699 114 EPVRAEVVQLRAEVQKLNS 132 (264)
Q Consensus 114 e~lk~El~q~raE~q~L~~ 132 (264)
-|..|-.+...|.+++..
T Consensus 534 -kme~~~~~~~~e~~~~~~ 551 (592)
T 1f5n_A 534 -KMENDRVQLLKEQERTLA 551 (592)
T ss_dssp -HHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHH
Confidence 455666666666665433
No 60
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=75.03 E-value=15 Score=29.21 Aligned_cols=43 Identities=30% Similarity=0.434 Sum_probs=29.6
Q ss_pred HHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 95 HTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQ 140 (264)
Q Consensus 95 q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~q 140 (264)
+.|.++++..|.|.| ++.|+.++..++..+....++.++|..+
T Consensus 5 e~~~~~~~~~~~e~e---~~~l~~~~~el~~~l~~~~~~~~e~g~~ 47 (125)
T 1joc_A 5 ERRALLERCLKGEGE---IEKLQTKVLELQRKLDNTTAAVQELGRE 47 (125)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 457899999999985 4667777777777666655555554433
No 61
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=75.01 E-value=11 Score=29.73 Aligned_cols=21 Identities=29% Similarity=0.340 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 024699 198 NNLISMAREIEKLRAELLNTE 218 (264)
Q Consensus 198 knlismarEvEKLRaElanae 218 (264)
+.+-.+-.|+|+||.-+.+.+
T Consensus 75 ~~~e~Lq~E~erLr~~v~~lE 95 (100)
T 1go4_E 75 EDHSQLQAECERLRGLLRAME 95 (100)
T ss_dssp HHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334445555666665555444
No 62
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=74.68 E-value=54 Score=31.96 Aligned_cols=11 Identities=27% Similarity=0.265 Sum_probs=5.2
Q ss_pred cchHHHHHHHH
Q 024699 62 DDNTHLQRELT 72 (264)
Q Consensus 62 athvaLrqeLa 72 (264)
+|.-.|..-|.
T Consensus 82 PTtC~l~D~L~ 92 (464)
T 1m1j_B 82 PTGCELQTTLL 92 (464)
T ss_dssp ECTTHHHHHHH
T ss_pred CCccHHHHHHH
Confidence 44445544444
No 63
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=74.51 E-value=2 Score=30.09 Aligned_cols=43 Identities=19% Similarity=0.392 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhhhhcccccccccchHHHHHHHHhhHHHHHHHh
Q 024699 40 EEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLG 82 (264)
Q Consensus 40 Ee~l~~Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~ 82 (264)
|+++..-...+..|..-|.+|+.+=-.-|++|...+.+|..|.
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888887888999999999999888888888888888887764
No 64
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=74.51 E-value=41 Score=28.88 Aligned_cols=19 Identities=16% Similarity=0.216 Sum_probs=10.3
Q ss_pred hcccccccccchHHHHHHH
Q 024699 53 IISENRHAIDDNTHLQREL 71 (264)
Q Consensus 53 Ll~dNqRLaathvaLrqeL 71 (264)
++....++|..|..|-+.|
T Consensus 74 ~l~~~e~~a~~h~~~a~~L 92 (301)
T 2efk_A 74 ILQEVNDFAGQRELVAENL 92 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455566665555555
No 65
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=74.14 E-value=9.3 Score=28.72 Aligned_cols=52 Identities=15% Similarity=0.291 Sum_probs=34.5
Q ss_pred HhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 024699 108 VELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLI 159 (264)
Q Consensus 108 Aelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqip 159 (264)
|==|+.+.=|.--......+..|...-..|..+|+.|++|+..+..=+-|+|
T Consensus 26 AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q~p 77 (78)
T 1gu4_A 26 AVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 4445566666666667777777777777777777777777777776666665
No 66
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=74.08 E-value=7.5 Score=27.31 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024699 128 QKLNSSRQELTTQIKGLTKDVNRLEAENK 156 (264)
Q Consensus 128 q~L~~~RQeL~~qvq~l~qeL~r~~ad~q 156 (264)
..|.+-=|.|+.||..|..|+.-+++|++
T Consensus 7 ~~Lss~V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 7 DQASSDAQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555554
No 67
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=73.16 E-value=9.6 Score=27.76 Aligned_cols=41 Identities=15% Similarity=0.385 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 024699 158 LIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAR 205 (264)
Q Consensus 158 ipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismar 205 (264)
+=+|+.|+..|++|.......+|+|.+++- .+|+.+-.|.+
T Consensus 9 VYalkDev~eLk~e~k~~k~~le~eqraRk-------~LE~~vrk~~k 49 (61)
T 3l4f_A 9 VYALKDEVQELRQDNKKMKKSLEEEQRARK-------DLEKLVRKVLK 49 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHh
Confidence 668899999999999999999999988754 45555555544
No 68
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=72.98 E-value=3.8 Score=34.04 Aligned_cols=13 Identities=15% Similarity=0.268 Sum_probs=6.4
Q ss_pred HHHHHHHHhhhhh
Q 024699 207 IEKLRAELLNTER 219 (264)
Q Consensus 207 vEKLRaElanae~ 219 (264)
+++|++.|..++.
T Consensus 105 ~~~L~~ql~e~e~ 117 (135)
T 2e7s_A 105 NKRLTEQLREKDM 117 (135)
T ss_dssp HHHHHHTTTHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555554443
No 69
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=71.79 E-value=21 Score=26.96 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=9.1
Q ss_pred HhhhhhHHhhhhchhHHHHHHH
Q 024699 101 DRGLKLEVELRASEPVRAEVVQ 122 (264)
Q Consensus 101 ek~~KmEAelra~e~lk~El~q 122 (264)
.++..++.+++..+.+..||..
T Consensus 27 ~q~~~l~~~~~e~~~~~~eL~~ 48 (117)
T 2zqm_A 27 QQKQKVQLELTEAKKALDEIES 48 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3333334444444444444443
No 70
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=71.79 E-value=23 Score=27.04 Aligned_cols=16 Identities=44% Similarity=0.605 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 024699 136 ELTTQIKGLTKDVNRL 151 (264)
Q Consensus 136 eL~~qvq~l~qeL~r~ 151 (264)
+|..+|..++.|-+++
T Consensus 60 ~Lr~~i~~~~~ek~~l 75 (93)
T 3s4r_A 60 ELRRQVDQLTNDKARV 75 (93)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444443333
No 71
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=71.20 E-value=22 Score=29.80 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 024699 159 IAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQ 194 (264)
Q Consensus 159 pal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~q 194 (264)
|.+.+-|+.+++-+..-|+.+..=|+--..+++|++
T Consensus 69 p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~qv~ 104 (150)
T 4dci_A 69 PRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQVR 104 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555666655555555544444444444444443
No 72
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=70.43 E-value=26 Score=26.48 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 024699 192 QKQAMENNLISMAREIEKLRAELLN 216 (264)
Q Consensus 192 q~qaMEknlismarEvEKLRaElan 216 (264)
....+++.+-.+..++++|+..|..
T Consensus 85 ~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 85 RLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555443
No 73
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=70.25 E-value=52 Score=32.05 Aligned_cols=27 Identities=26% Similarity=0.556 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 118 AEVVQLRAEVQKLNSSRQELTTQIKGL 144 (264)
Q Consensus 118 ~El~q~raE~q~L~~~RQeL~~qvq~l 144 (264)
++..++..+++.|.+.|..++.+|..+
T Consensus 77 ~~~r~~~~~~~~l~~~rn~~sk~i~~~ 103 (501)
T 1wle_A 77 QELRQLREQIRSLEEEKEAVTEAVRAL 103 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555556666666666555543
No 74
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=68.94 E-value=52 Score=27.74 Aligned_cols=50 Identities=16% Similarity=0.091 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 158 LIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAE 213 (264)
Q Consensus 158 ipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaE 213 (264)
+-.|+.|+.+|+-++..+-..+.--++-|.++++. =|-.|++|.++|-.+
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~R------WM~rk~qEAe~MN~a 147 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQKLSDLKKEHSQLVAR------WLKKTEKETEAMNSE 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHh
Confidence 44566777777777776666665555556666654 345577888776543
No 75
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=68.68 E-value=36 Score=25.87 Aligned_cols=45 Identities=18% Similarity=0.151 Sum_probs=27.7
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 024699 177 RAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNTERRA 221 (264)
Q Consensus 177 aa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElanae~ra 221 (264)
--|+..|-.|..+..+.+....+-....+|.++|+.|..+-..|-
T Consensus 27 mEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl 71 (81)
T 2jee_A 27 MEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555556666666666667777777777777666554
No 76
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=68.35 E-value=43 Score=26.59 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 024699 162 RADIDGIRSELVEARRAFEF 181 (264)
Q Consensus 162 ~aEie~lrqElqr~Raa~Ey 181 (264)
.+-|..|..||+.+|..++-
T Consensus 83 q~~i~~lE~eL~~~r~em~~ 102 (131)
T 3tnu_A 83 QEMIGSVEEQLAQLRCEMEQ 102 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555544443
No 77
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=68.11 E-value=34 Score=25.36 Aligned_cols=28 Identities=11% Similarity=0.093 Sum_probs=12.5
Q ss_pred HhhhhhHhhhhhHHHHHHHHHhhhhhHH
Q 024699 81 LGQIIPKLRADKEAHTRELFDRGLKLEV 108 (264)
Q Consensus 81 l~~~~~~l~ae~e~q~R~l~ek~~KmEA 108 (264)
|...+.++..--+.++..+=.++..+|+
T Consensus 13 LE~~l~e~e~~~~~~~~~~q~~i~~lE~ 40 (84)
T 1gk4_A 13 LERQMREMEENFAVEAANYQDTIGRLQD 40 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443
No 78
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=67.85 E-value=21 Score=26.93 Aligned_cols=54 Identities=28% Similarity=0.447 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 024699 136 ELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMARE 206 (264)
Q Consensus 136 eL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarE 206 (264)
+|..||..++.|=+++. .||++++..+...|.-||.|-.. .+.+|.+++.+-+.
T Consensus 4 eLr~qi~~l~~e~~~l~----------~e~dn~~~~~edfk~KyE~E~~~-------R~~~E~d~~~Lrkd 57 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVE----------VERDNLAEDIMRLREKLQEEMLQ-------REEAENTLQSFRQD 57 (86)
T ss_dssp HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhh
Confidence 56666666666644332 45666666666666666665444 45555555554443
No 79
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=67.33 E-value=40 Score=25.84 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh
Q 024699 133 SRQELTTQIKGLTKDVNRLEAENKQ 157 (264)
Q Consensus 133 ~RQeL~~qvq~l~qeL~r~~ad~qq 157 (264)
.|..+.++|....+||.+++.++++
T Consensus 68 ~R~~~~~klr~Yk~dL~~lk~elk~ 92 (102)
T 1vcs_A 68 SRGMYSNRMRSYKQEMGKLETDFKR 92 (102)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777666666554
No 80
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=67.23 E-value=6.3 Score=31.55 Aligned_cols=36 Identities=25% Similarity=0.430 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 024699 137 LTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSEL 172 (264)
Q Consensus 137 L~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqEl 172 (264)
|+++|+.|.+||..+..=..+|-.|+.+|+.+++.+
T Consensus 4 l~~~~~~l~~~~~~~~~l~~~~~~l~~~l~~~~~~l 39 (182)
T 3kqg_A 4 LNAQIPELKSDLEKASALNTKIRALQGSLENMSKLL 39 (182)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555544444444444444444444433
No 81
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=67.14 E-value=26 Score=26.15 Aligned_cols=57 Identities=28% Similarity=0.439 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Q 024699 123 LRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQA 195 (264)
Q Consensus 123 ~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qa 195 (264)
+..+|..|.....||..++..+.+++.++..+-+.+..+++ .|||+.+.|.+=-.||
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~eee~~~~~~k~----------------~lek~L~~E~~LK~QA 58 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKDEEISAAAIKA----------------QFEKQLLTERTLKTQA 58 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHH
Confidence 35678888888889999999888888877754444434333 3556666665544444
No 82
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=67.07 E-value=51 Score=26.96 Aligned_cols=115 Identities=9% Similarity=0.166 Sum_probs=59.5
Q ss_pred HHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 68 QRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (264)
Q Consensus 68 rqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qe 147 (264)
=.++...+.+|+.+...+..|+ .+..+++- .......++.+|..+-.++.++...- ..+++.|.++
T Consensus 42 ~~~v~~I~~~i~~i~~~v~~l~--------~~~~~~L~---~~~~~~~~k~~le~l~~~i~~~a~~i---k~~Lk~l~~~ 107 (180)
T 1s94_A 42 FEQVEEIRAMIDKISDNVDAVK--------KKHSDILS---APQTDDQMKEELEELMTDIKRTANKV---RGKLKTIELN 107 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHCC----------CHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHh---cCCchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3555555566666655555544 22222222 12244567788888888777766543 3444444444
Q ss_pred HHHH----------HHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHH
Q 024699 148 VNRL----------EAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMEN 198 (264)
Q Consensus 148 L~r~----------~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEk 198 (264)
.... +.-.-|...|...+-.+=++++.+...|..+-|..+. -|...+-.
T Consensus 108 ~~~~~~~~~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K~~i~--Rq~~I~~~ 166 (180)
T 1s94_A 108 IEQEEHSNKSSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCKARIK--RQMEITGR 166 (180)
T ss_dssp HHHTC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCCC------------
T ss_pred HHhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhCC
Confidence 3322 1122367788888888888888888888877777665 35554443
No 83
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=66.61 E-value=65 Score=30.88 Aligned_cols=33 Identities=9% Similarity=-0.019 Sum_probs=22.5
Q ss_pred hhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhH
Q 024699 84 IIPKLRADKEAHTRELFDRGLKLEVELRASEPV 116 (264)
Q Consensus 84 ~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~l 116 (264)
.......+....++.+++...+--+.....+.+
T Consensus 78 ~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~ 110 (390)
T 1deq_A 78 NYQKNSKDSNTLTKNIVELMRGDFAKANNNDNT 110 (390)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhhccchHH
Confidence 334455566678888888888877777666544
No 84
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=65.38 E-value=34 Score=29.07 Aligned_cols=21 Identities=24% Similarity=0.126 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 024699 158 LIAMRADIDGIRSELVEARRA 178 (264)
Q Consensus 158 ipal~aEie~lrqElqr~Raa 178 (264)
+..++.+|...++||+.+-++
T Consensus 87 ~~~Lr~ql~akr~EL~aL~~a 107 (175)
T 3lay_A 87 TSALRQQLISKRYEYNALLTA 107 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 445677788888888776654
No 85
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=64.67 E-value=12 Score=25.75 Aligned_cols=27 Identities=22% Similarity=0.556 Sum_probs=15.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 024699 146 KDVNRLEAENKQLIAMRADIDGIRSELVE 174 (264)
Q Consensus 146 qeL~r~~ad~qqipal~aEie~lrqElqr 174 (264)
.||.+.+.|+ +..++.||..+++||.-
T Consensus 7 ~dle~~KqEI--L~E~RkElqK~K~EIIe 33 (45)
T 1use_A 7 SDLQRVKQEL--LEEVKKELQKVKEEIIE 33 (45)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 3455555555 55666666666666543
No 86
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=64.43 E-value=57 Score=26.57 Aligned_cols=13 Identities=38% Similarity=0.511 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHh
Q 024699 203 MAREIEKLRAELL 215 (264)
Q Consensus 203 marEvEKLRaEla 215 (264)
...|||.||.+..
T Consensus 90 a~ae~erlr~~~~ 102 (121)
T 3mq7_A 90 ASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhch
Confidence 3445555555544
No 87
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=64.42 E-value=50 Score=25.89 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=15.3
Q ss_pred hhhhHHhhhhchhHHHHHHHHHHHHHHH
Q 024699 103 GLKLEVELRASEPVRAEVVQLRAEVQKL 130 (264)
Q Consensus 103 ~~KmEAelra~e~lk~El~q~raE~q~L 130 (264)
..|++...-.++.++.||..-..|++.|
T Consensus 46 ~~k~~eq~~~le~lk~eL~~~~~el~~l 73 (107)
T 2no2_A 46 QRKTQEQLEVLESLKQELATSQRELQVL 73 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555666655555555553
No 88
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=63.85 E-value=64 Score=27.18 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=18.7
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 112 ASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTK 146 (264)
Q Consensus 112 a~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~q 146 (264)
..+.+++|+..++.++-.+....+.|..+-+.|-+
T Consensus 97 ~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~ 131 (152)
T 3a7p_A 97 NTERLNAALISGTIENNVLQQKLSDLKKEHSQLVA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677766666655544444444444444333
No 89
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=63.80 E-value=21 Score=24.29 Aligned_cols=45 Identities=22% Similarity=0.440 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 158 LIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKL 210 (264)
Q Consensus 158 ipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKL 210 (264)
+.+|+.|++.|+.| .|--|.- +-+-...|++||.|.++..-+..|
T Consensus 2 laalkselqalkke------gfspeel--aaleselqalekklaalksklqal 46 (48)
T 1g6u_A 2 LAALKSELQALKKE------GFSPEEL--AALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHT------TCSHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHc------CCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777777655 2333322 223345788888888887665544
No 90
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=63.56 E-value=3.5 Score=34.69 Aligned_cols=37 Identities=27% Similarity=0.346 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024699 122 QLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL 158 (264)
Q Consensus 122 q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqi 158 (264)
++.+|.++|....|-+-+--++++.||.-++...+++
T Consensus 98 ~LeAE~aKLeEekQIseASRqgLrRDLeASReAKKql 134 (146)
T 2xnx_M 98 QLTIEKAKLEEEKQISDASRQSLRRDLDASREAKKQV 134 (146)
T ss_dssp HHHHHHHHHGGGTTTC---------------------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444455555665555555444
No 91
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=63.55 E-value=53 Score=25.93 Aligned_cols=21 Identities=14% Similarity=0.283 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhh
Q 024699 161 MRADIDGIRSELVEARRAFEF 181 (264)
Q Consensus 161 l~aEie~lrqElqr~Raa~Ey 181 (264)
+.+-|..|..||+.+|..++-
T Consensus 80 ~q~~i~~lE~eL~~~r~e~~~ 100 (129)
T 3tnu_B 80 ARNKLAELEEALQKAKQDMAR 100 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHH
Confidence 334444555555555554443
No 92
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=63.50 E-value=64 Score=26.87 Aligned_cols=95 Identities=21% Similarity=0.303 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH---HHHHH
Q 024699 123 LRAEVQKLNSSRQELTTQIKGLTKDVNRL--EAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQ---KQAME 197 (264)
Q Consensus 123 ~raE~q~L~~~RQeL~~qvq~l~qeL~r~--~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq---~qaME 197 (264)
+-.+.+.|.+-=.+|..-|..|++|+..= +-..+|+-.+..||+.+..||..+-..|.-||-.--..-|. -=.=|
T Consensus 19 L~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~VceE 98 (141)
T 3okq_A 19 LGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDKVCEE 98 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHH
Confidence 34666777777777777788888887653 44678999999999999999999999999999876555442 22224
Q ss_pred HHHHHHHHH-HHHHHHHHhhh
Q 024699 198 NNLISMARE-IEKLRAELLNT 217 (264)
Q Consensus 198 knlismarE-vEKLRaElana 217 (264)
+.+..+.-| +.-|+.+|.++
T Consensus 99 Qqfl~~QedL~~DL~eDL~ka 119 (141)
T 3okq_A 99 QQFLTLQEELILDLKEDLGKA 119 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555544 45555555554
No 93
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=63.20 E-value=47 Score=25.87 Aligned_cols=44 Identities=9% Similarity=0.209 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 024699 126 EVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIR 169 (264)
Q Consensus 126 E~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lr 169 (264)
+++.|....|.|..+++.+++.+..+......+-.....|+.|.
T Consensus 2 ~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~ 45 (133)
T 1fxk_C 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQ 45 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45666666777777777777777766666644444445555444
No 94
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=62.35 E-value=45 Score=26.16 Aligned_cols=36 Identities=19% Similarity=0.412 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNR 150 (264)
Q Consensus 115 ~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r 150 (264)
|+..++..++.++..|.....+...++..|..+|.+
T Consensus 2 ~~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~e 37 (97)
T 2eqb_B 2 PLGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAK 37 (97)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 567778888888888776665555555555554443
No 95
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=61.90 E-value=13 Score=28.86 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 024699 197 ENNLISMAREIEKLRAELL 215 (264)
Q Consensus 197 EknlismarEvEKLRaEla 215 (264)
+.-|..++..|++|++++-
T Consensus 61 ~~~L~e~~~kid~L~~el~ 79 (98)
T 2ke4_A 61 EPQIAETLSNIERLKLEVQ 79 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666653
No 96
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=61.58 E-value=52 Score=25.21 Aligned_cols=36 Identities=17% Similarity=0.384 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhh
Q 024699 120 VVQLRAEVQKLN-SSRQELTTQIKGLTKDVNRLEAEN 155 (264)
Q Consensus 120 l~q~raE~q~L~-~~RQeL~~qvq~l~qeL~r~~ad~ 155 (264)
|.|...|++.+- +.|..+.++|....+||.+++.|+
T Consensus 65 l~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk~el 101 (102)
T 2qyw_A 65 LAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455555555553 457788888888888888777665
No 97
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=61.45 E-value=38 Score=23.53 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 117 RAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRL 151 (264)
Q Consensus 117 k~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~ 151 (264)
|.....+..++..|...-.+|..+|..|..++..+
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~L 55 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQL 55 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555554443
No 98
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=61.07 E-value=26 Score=26.14 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 024699 119 EVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (264)
Q Consensus 119 El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 179 (264)
|+..+..+|++|.+.=-+...++..|..| +-.+-++||.+-++.=..-+++..+|..+
T Consensus 4 di~eLkkevkKL~~~A~q~kmdLHDLaEd---LP~~w~~i~~vA~~tyda~~~l~~ak~~L 61 (71)
T 2js5_A 4 GAEELKAKLKKLNAQATALKMDLHDLAED---LPTGWNRIMEVAEKTYEAYRQLDEFRKST 61 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHS---TTTSGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHhcc---chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556778889888888889999999988 66888888888877766666666666543
No 99
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=61.07 E-value=12 Score=26.10 Aligned_cols=25 Identities=16% Similarity=0.385 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 114 EPVRAEVVQLRAEVQKLNSSRQELT 138 (264)
Q Consensus 114 e~lk~El~q~raE~q~L~~~RQeL~ 138 (264)
|+||.|+..++..+..|...-+||.
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333333333
No 100
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=61.07 E-value=4.9 Score=36.47 Aligned_cols=44 Identities=20% Similarity=0.403 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhhhhcccccccccchHHHHHHHHhhHHHHHHHhh
Q 024699 40 EEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQ 83 (264)
Q Consensus 40 Ee~l~~Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~ 83 (264)
|+++..-..++..|-..|.+|.++--.+++||...+.||.+|..
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88888888899999999999999999999999999999999863
No 101
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=60.95 E-value=44 Score=25.65 Aligned_cols=29 Identities=7% Similarity=0.246 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 024699 135 QELTTQIKGLTKDVNRLEAENKQLIAMRA 163 (264)
Q Consensus 135 QeL~~qvq~l~qeL~r~~ad~qqipal~a 163 (264)
..|.++++.+..|+++...|-|.+..+|.
T Consensus 47 ~~lE~eL~~~r~e~~~ql~EYq~LlnvKl 75 (95)
T 3mov_A 47 TDKEREMAEIRDQMQQQLNDYEQLLDVKL 75 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555444444444444443
No 102
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=60.30 E-value=25 Score=26.87 Aligned_cols=59 Identities=22% Similarity=0.374 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 024699 119 EVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (264)
Q Consensus 119 El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~E 180 (264)
|+..+..+|++|.+.=-+...+++.|..| +-.+-++||.+-++.-...+++..+|..+.
T Consensus 16 di~eLkkevkKL~~~A~q~kmdLHDLaEd---LP~~w~~i~~vA~~tyda~~~l~~ak~~L~ 74 (81)
T 3csx_A 16 AVADLKKKVRKLNSKAGQMKMDLHDLAEG---LPTDYENLVETAEKTYEIFRELDQLKKKLN 74 (81)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHH---TTTTGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777888888888899999999998 668888888888877777777776666543
No 103
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=60.24 E-value=41 Score=23.81 Aligned_cols=41 Identities=27% Similarity=0.396 Sum_probs=22.6
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 111 RASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRL 151 (264)
Q Consensus 111 ra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~ 151 (264)
|...--|++...+..+++.|.....+|..+|..|..|+..+
T Consensus 16 R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 16 RYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555566666666666666665555555554443
No 104
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=59.36 E-value=56 Score=24.84 Aligned_cols=7 Identities=43% Similarity=0.297 Sum_probs=2.6
Q ss_pred HhhhhhH
Q 024699 101 DRGLKLE 107 (264)
Q Consensus 101 ek~~KmE 107 (264)
||..-||
T Consensus 23 dKVR~LE 29 (93)
T 3s4r_A 23 DKVRFLE 29 (93)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 105
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=59.27 E-value=59 Score=26.58 Aligned_cols=25 Identities=4% Similarity=0.189 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 024699 191 EQKQAMENNLISMAREIEKLRAELL 215 (264)
Q Consensus 191 Eq~qaMEknlismarEvEKLRaEla 215 (264)
-|..++-+.|..+..+--+++....
T Consensus 126 ~q~~~L~~kf~~~m~~yq~~q~~y~ 150 (180)
T 1s94_A 126 TQYSTISRKFVEVMSDYNTTQIDYR 150 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777766655433
No 106
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=57.96 E-value=1.2e+02 Score=30.06 Aligned_cols=59 Identities=19% Similarity=0.250 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024699 158 LIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLN 216 (264)
Q Consensus 158 ipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElan 216 (264)
.-.|...|++++++|+++-.-.+--.+--.....+++.+|.|+.+.-.+++..=.++.+
T Consensus 632 ~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 690 (695)
T 2j69_A 632 SKRINDDIVSRKSELDNLVKQKQTREINRESEFNRLKNLQEDVIAQLQKIEAAYSNLLA 690 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 34567888999999999999888888888888899999888877766666554444443
No 107
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=57.28 E-value=60 Score=24.50 Aligned_cols=41 Identities=17% Similarity=0.348 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhh
Q 024699 115 PVRAEVVQLRAEVQKLNSSRQELTT---QIKGLTKDVNRLEAEN 155 (264)
Q Consensus 115 ~lk~El~q~raE~q~L~~~RQeL~~---qvq~l~qeL~r~~ad~ 155 (264)
.++..+.|.++|++.|....+||.. +++.|-.+|.+-++++
T Consensus 15 rl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l 58 (78)
T 3iv1_A 15 RMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEV 58 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999965 4555555555544444
No 108
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=56.83 E-value=62 Score=24.57 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 024699 114 EPVRAEVVQLRAEVQKLNS 132 (264)
Q Consensus 114 e~lk~El~q~raE~q~L~~ 132 (264)
+.++.+|..+-.++.++..
T Consensus 46 ~~~~~~l~~l~~~i~~~a~ 64 (127)
T 1ez3_A 46 EKTKEELEELMSDIKKTAN 64 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666655555555443
No 109
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=56.61 E-value=90 Score=28.26 Aligned_cols=13 Identities=23% Similarity=0.580 Sum_probs=4.4
Q ss_pred CCCCCCCCC-CCCC
Q 024699 226 GSAYGLLNG-CPDM 238 (264)
Q Consensus 226 g~~Yg~~yg-~p~~ 238 (264)
.|-||+||. -|+.
T Consensus 320 aGiyGMNf~~mPel 333 (363)
T 2iub_A 320 AGIYGMNFEYMPEL 333 (363)
T ss_dssp TTSCC---------
T ss_pred HhhhcccCCCCCcc
Confidence 689999996 3544
No 110
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=56.50 E-value=88 Score=26.22 Aligned_cols=38 Identities=21% Similarity=0.371 Sum_probs=25.0
Q ss_pred hhhhhHHHHHHH-------HHHHHHHHHHhhhhhhhhhhhHHHHH
Q 024699 154 ENKQLIAMRADI-------DGIRSELVEARRAFEFEKKANEEQIE 191 (264)
Q Consensus 154 d~qqipal~aEi-------e~lrqElqr~Raa~EyEKk~~~e~~E 191 (264)
|+-++-.|.|++ |+|-+=|--+|..+|.||-.-.|.+.
T Consensus 96 DiRKLrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~~E~Md 140 (167)
T 4gkw_A 96 DMRKLGELEADLKEKDSMVESLTETIGILRKELENEKLKAAENMD 140 (167)
T ss_dssp HHHHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555565554 66777777788888888866555443
No 111
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=56.23 E-value=41 Score=32.18 Aligned_cols=19 Identities=21% Similarity=0.447 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024699 123 LRAEVQKLNSSRQELTTQI 141 (264)
Q Consensus 123 ~raE~q~L~~~RQeL~~qv 141 (264)
+..+++.|.+.|..++.+|
T Consensus 43 ~~~~~~~l~~~~n~~sk~i 61 (455)
T 2dq0_A 43 KLKEINRLRHERNKIAVEI 61 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 112
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=56.21 E-value=73 Score=31.91 Aligned_cols=14 Identities=7% Similarity=-0.216 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHh
Q 024699 163 ADIDGIRSELVEAR 176 (264)
Q Consensus 163 aEie~lrqElqr~R 176 (264)
.+.+---+|+++.+
T Consensus 43 e~F~~~y~~~~~~~ 56 (585)
T 1y1u_A 43 EYFIIQYQESLRIQ 56 (585)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHhhhhHHHHhhH
Confidence 33333333443333
No 113
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=55.33 E-value=65 Score=24.35 Aligned_cols=56 Identities=23% Similarity=0.265 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 024699 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (264)
Q Consensus 114 e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 179 (264)
..+..|+.++=.|-..|......|-.-...|-..+. .|-.|-+.|+.|+..++.+.
T Consensus 5 ~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvd----------ELt~E~e~l~~El~s~~~~~ 60 (77)
T 2w83_C 5 EFMGREVENLILENTQLLETKNALNIVKNDLIAKVD----------ELTCEKDVLQGELEAVKQAK 60 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHhHHHHHHHHHHHHHHHH
Confidence 356677888888877777777776655555544433 44445555555555544443
No 114
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=54.70 E-value=45 Score=32.52 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024699 121 VQLRAEVQKLNSSRQELTTQI 141 (264)
Q Consensus 121 ~q~raE~q~L~~~RQeL~~qv 141 (264)
.++..+++.|.+.|..++.+|
T Consensus 43 r~~~~~~~~l~~~rn~~sk~i 63 (485)
T 3qne_A 43 VKLRFDLDEHNKKLNSVQKEI 63 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444
No 115
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=54.69 E-value=51 Score=27.41 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 024699 115 PVRAEVVQLRAEVQKLNSSRQEL 137 (264)
Q Consensus 115 ~lk~El~q~raE~q~L~~~RQeL 137 (264)
....++..+-.++.++...-+..
T Consensus 82 ~~~~~~~~~~~~i~~~~~~i~~~ 104 (279)
T 3c98_B 82 KTKEELEELMSDIKKTANKVRSK 104 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544433333
No 116
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=54.36 E-value=66 Score=24.09 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 93 EAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQ 140 (264)
Q Consensus 93 e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~q 140 (264)
|-+|..+-+.+.++...+...+..+.||..- ..+|...+.+|..+
T Consensus 13 eeEm~~~eeel~~lke~l~k~e~~rkele~~---~~~l~~ek~~L~~q 57 (89)
T 3bas_A 13 EEEMKEQLKQMDKMKEDLAKTERIKKELEEQ---NVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3444455555555555555555555555533 33566666666655
No 117
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=54.35 E-value=25 Score=24.40 Aligned_cols=22 Identities=9% Similarity=0.226 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024699 129 KLNSSRQELTTQIKGLTKDVNR 150 (264)
Q Consensus 129 ~L~~~RQeL~~qvq~l~qeL~r 150 (264)
.|....++|..++..|++++..
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~e 44 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKK 44 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444443333
No 118
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=53.95 E-value=20 Score=28.90 Aligned_cols=35 Identities=14% Similarity=0.397 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 024699 158 LIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQ 192 (264)
Q Consensus 158 ipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq 192 (264)
.-.|..+|..++.+|..++.|+.|+++..-+.++.
T Consensus 9 ~~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~eL~~ 43 (122)
T 3viq_A 9 RLKLEKEVRNLQEQLITAETARKVEAKNEDKDLQT 43 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 34567888999999999999999999998776554
No 119
>2iaz_A Hypothetical protein SP1372; structural genomics, PSI-2, protei structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: a.281.1.2
Probab=53.90 E-value=69 Score=24.18 Aligned_cols=54 Identities=15% Similarity=0.218 Sum_probs=37.7
Q ss_pred HHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024699 96 TRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQL 158 (264)
Q Consensus 96 ~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqi 158 (264)
|..++|++-.|...|+.++.+ .++..+...++. -.+++.+-.++.+.+.+++..
T Consensus 2 m~~I~d~A~eL~~~I~~s~ey-~~~~~a~~~i~~--------d~ea~~l~~~f~~~q~~~~~~ 55 (113)
T 2iaz_A 2 MSNIYDSANELSRGLRGLPEY-KAVKAAKDAIAA--------DAEASKIFTDYLAFQEEIQKL 55 (113)
T ss_dssp HHHHHHHHHHHHHHHHTSHHH-HHHHHHHHHHHH--------CHHHHHHHHHHHHHGGGTTTT
T ss_pred hHHHHHHHHHHHHHHHcCHHH-HHHHHHHHHHHc--------CHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999888 667766665554 234555666666666665543
No 120
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=53.90 E-value=47 Score=25.32 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 024699 141 IKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (264)
Q Consensus 141 vq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~E 180 (264)
...+.+.+..+..++ -.|+++|+.|..|+..+|..|-
T Consensus 38 ~~e~~~r~~~Le~EN---~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 38 NLETQHKVLELTAEN---ERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555 3456777778888777776653
No 121
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=53.83 E-value=81 Score=25.01 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhh
Q 024699 156 KQLIAMRADIDGIRSELVEARRA 178 (264)
Q Consensus 156 qqipal~aEie~lrqElqr~Raa 178 (264)
.+|-+|.+||+.|+.|-|+++..
T Consensus 65 ~~v~eLe~everL~~ENq~L~~e 87 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLLTE 87 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 57788888999999888888753
No 122
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=53.83 E-value=54 Score=22.99 Aligned_cols=16 Identities=13% Similarity=0.135 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHhh
Q 024699 162 RADIDGIRSELVEARR 177 (264)
Q Consensus 162 ~aEie~lrqElqr~Ra 177 (264)
+.+|+.|+.|+..++.
T Consensus 43 ~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 43 QTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555544443
No 123
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=53.78 E-value=48 Score=28.93 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 024699 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (264)
Q Consensus 115 ~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 179 (264)
.++.-+.+++.-|++|++.--.|+.+++. ...||+.|+.+++.++...
T Consensus 10 ~~q~ql~~ad~LV~~L~~En~~L~~ql~~-----------------k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 10 SVKQQIDSADLLVANLVNENFVLSEKLDT-----------------KATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhhh
Confidence 34444555666666665555555544443 2345555566666555555
No 124
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=53.54 E-value=11 Score=37.22 Aligned_cols=28 Identities=18% Similarity=0.111 Sum_probs=16.8
Q ss_pred ccchHHHHHHHHhhHHHHHHHhhhhhHh
Q 024699 61 IDDNTHLQRELTASKDEIHRLGQIIPKL 88 (264)
Q Consensus 61 aathvaLrqeLaaaq~Elqrl~~~~~~l 88 (264)
-+++..++|==+.|+.|=.+=..--..|
T Consensus 296 ~~d~~e~qqm~~~a~e~~~~~~~e~~~l 323 (575)
T 2i1j_A 296 KPDTIDVQQMKAQAREEKLAKQAQREKL 323 (575)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777776655544433333
No 125
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=52.82 E-value=29 Score=30.57 Aligned_cols=13 Identities=8% Similarity=0.156 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHH
Q 024699 190 IEQKQAMENNLIS 202 (264)
Q Consensus 190 ~Eq~qaMEknlis 202 (264)
+=|.|-+=||+|-
T Consensus 108 LVqLQNiiKniil 120 (206)
T 3oa7_A 108 LTTLQNTVKEIVL 120 (206)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4467888888774
No 126
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=52.37 E-value=1.4e+02 Score=27.36 Aligned_cols=122 Identities=16% Similarity=0.177 Sum_probs=65.5
Q ss_pred chHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhc----hhHHHHHHHHHHHHHHHHH------
Q 024699 63 DNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRAS----EPVRAEVVQLRAEVQKLNS------ 132 (264)
Q Consensus 63 thvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~----e~lk~El~q~raE~q~L~~------ 132 (264)
.--.|+.++..-++..+.+...+.+++..-+...+.+-...-.+..-|.+- +.+++|+.+++.+++....
T Consensus 124 ~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~~~~~~i~~~~ 203 (346)
T 2nrj_A 124 GITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSVNYYKQLESDGF 203 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGGCGGGCCC--CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 335566666666666777777777777666666666666665555544333 4566666666555542221
Q ss_pred -----------------------HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 024699 133 -----------------------SRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKK 184 (264)
Q Consensus 133 -----------------------~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk 184 (264)
....+..++..+.+.+...+.....+-.+..-++.|..-+.-+..++++=+.
T Consensus 204 ~~~~g~~i~~~i~Ggi~a~~a~k~~~~~~~ei~~l~~~i~~~~~l~~~l~~~~~~~~~l~~~I~~Ai~al~~l~~ 278 (346)
T 2nrj_A 204 NVMKGAILGLPIIGGIIVGVARDNLGKLEPLLAELRQTVDYKVTLNRVVGVAYSNINEMHKALDDAINALTYMST 278 (346)
T ss_dssp GGGTSCEEEEEETTTEEEEEEGGGHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccceehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223333333344333333334444555555556666666666655555443
No 127
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=52.10 E-value=1.6e+02 Score=27.81 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 024699 185 ANEEQIEQKQAMENNLISMARE 206 (264)
Q Consensus 185 ~~~e~~Eq~qaMEknlismarE 206 (264)
.-...+++.|.||..-|..-++
T Consensus 225 ~~~~~~~~lQ~lEeeRi~~lK~ 246 (486)
T 3haj_A 225 NMEQVFEQCQQFEEKRLRFFRE 246 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777776665554
No 128
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=51.65 E-value=1.5e+02 Score=27.38 Aligned_cols=19 Identities=11% Similarity=0.282 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024699 188 EQIEQKQAMENNLISMARE 206 (264)
Q Consensus 188 e~~Eq~qaMEknlismarE 206 (264)
..++..|.||...|..-++
T Consensus 208 ~~~d~lQ~lEe~Ri~~lk~ 226 (406)
T 4dyl_A 208 GLLRSLQDLHEEMACILKE 226 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3467889999888887666
No 129
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=51.35 E-value=23 Score=24.81 Aligned_cols=34 Identities=21% Similarity=0.362 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 117 RAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNR 150 (264)
Q Consensus 117 k~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r 150 (264)
+..+..+..++..|.....+|..+|..|..++..
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~ 54 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQVAQ 54 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555443
No 130
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=50.89 E-value=46 Score=31.45 Aligned_cols=19 Identities=16% Similarity=0.517 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024699 122 QLRAEVQKLNSSRQELTTQ 140 (264)
Q Consensus 122 q~raE~q~L~~~RQeL~~q 140 (264)
++..+++.|.+.|..++.+
T Consensus 39 ~~~~~~~~l~~~~n~~sk~ 57 (421)
T 1ses_A 39 ELKKRLQEVQTERNQVAKR 57 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433
No 131
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=50.64 E-value=42 Score=26.09 Aligned_cols=40 Identities=13% Similarity=0.291 Sum_probs=23.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 024699 113 SEPVRAEVVQLRAEVQKLNSSRQ-ELTTQIKGLTKDVNRLE 152 (264)
Q Consensus 113 ~e~lk~El~q~raE~q~L~~~RQ-eL~~qvq~l~qeL~r~~ 152 (264)
.|++|+|...+-.|+..+...++ +.-.+|++=.+|++.++
T Consensus 16 LD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir 56 (92)
T 3vp9_A 16 LDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIR 56 (92)
T ss_dssp -CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 35667777777776666666665 66666554444444333
No 132
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=50.35 E-value=1.3e+02 Score=28.72 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 024699 189 QIEQKQAMENNLISMAREIEKLRAELLNTER 219 (264)
Q Consensus 189 ~~Eq~qaMEknlismarEvEKLRaElanae~ 219 (264)
.-++++.|+..|-+....|+.|...|...+.
T Consensus 103 ~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 103 HENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3356666666666777777777776665544
No 133
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=50.12 E-value=57 Score=24.32 Aligned_cols=38 Identities=24% Similarity=0.299 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 024699 139 TQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (264)
Q Consensus 139 ~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 179 (264)
...+.+.+.+..+..++ -.|+.+|+.|..|+..+|.-|
T Consensus 36 ~r~~e~~~r~~~L~~eN---~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 36 MRNLETQHKVLELTAEN---ERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666 346788888888888888654
No 134
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=49.82 E-value=43 Score=26.29 Aligned_cols=41 Identities=17% Similarity=0.252 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 024699 140 QIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (264)
Q Consensus 140 qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~E 180 (264)
++..|.+++.+...++.+||.|++.++--+.....=|++=|
T Consensus 39 ~ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~aERaaRE 79 (96)
T 3fx0_A 39 VIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERQARE 79 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778888888898999999998888877777776654
No 135
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=49.62 E-value=85 Score=23.96 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=20.2
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 171 ELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLR 211 (264)
Q Consensus 171 Elqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLR 211 (264)
++.+-+++|... -.+.....+..+.-|..-..-++||+
T Consensus 57 ~~w~eyn~~~~q---l~e~~dE~~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 57 QYQREYSEFKRQ---QLELDDELKSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444332 34455556666666666666666665
No 136
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=49.60 E-value=74 Score=23.69 Aligned_cols=24 Identities=8% Similarity=0.292 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHH
Q 024699 139 TQIKGLTKDVNRLEAENKQLIAMR 162 (264)
Q Consensus 139 ~qvq~l~qeL~r~~ad~qqipal~ 162 (264)
++++.+..|+++...|-|.+-.+|
T Consensus 42 ~el~~~r~e~~~ql~EYq~LlnvK 65 (86)
T 1x8y_A 42 REMAEMRARMQQQLDEYQELLDIK 65 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444433444443333
No 137
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=49.51 E-value=25 Score=22.31 Aligned_cols=13 Identities=23% Similarity=0.682 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 024699 160 AMRADIDGIRSEL 172 (264)
Q Consensus 160 al~aEie~lrqEl 172 (264)
+|+.||-.|+.|+
T Consensus 6 alkqeiaalkkei 18 (33)
T 4dzn_A 6 ALKQEIAALKKEI 18 (33)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 138
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=49.42 E-value=86 Score=23.98 Aligned_cols=58 Identities=17% Similarity=0.252 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 024699 119 EVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKAN 186 (264)
Q Consensus 119 El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~ 186 (264)
...++..+++.+...+..+-.+|.+|++.++ .+..|+|.....|..+...++...|..
T Consensus 24 rae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~----------~lE~eld~~ee~L~ea~~kLee~ek~~ 81 (101)
T 3u1c_A 24 RAEQAEADKKAAEERSKQLEDDIVQLEKQLR----------VTEDSRDQVLEELHKSEDSLLFAEENA 81 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444433 334455566666666655555554433
No 139
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=49.36 E-value=1e+02 Score=28.56 Aligned_cols=96 Identities=18% Similarity=0.234 Sum_probs=58.0
Q ss_pred ccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHH-HHHHHHHHHHHHHHHHHHH
Q 024699 61 IDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEV-VQLRAEVQKLNSSRQELTT 139 (264)
Q Consensus 61 aathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El-~q~raE~q~L~~~RQeL~~ 139 (264)
......||+.+...+++++.|.+..+.-.+-.+.= ..|.+.+ -..+-....+-... ..+.-| ..+...|.+++.
T Consensus 16 ~e~r~~lr~~~eql~~~i~~L~~~ap~W~~aq~al-~rL~eq~---g~~~~ds~~v~~~mq~~Le~E-re~~~~Rd~~a~ 90 (302)
T 3ibp_A 16 REERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSL-NQLSEQC---GEEFTSSQDVTEYLQQLLERE-REAIVERDEVGA 90 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHT---TCCCSSHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHH-HHHHHHh---CCcCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 44567899999999999999988877665444421 1111110 11122333444444 333444 678888888888
Q ss_pred HHHHHHHHHHHHHH-hhhhhHHH
Q 024699 140 QIKGLTKDVNRLEA-ENKQLIAM 161 (264)
Q Consensus 140 qvq~l~qeL~r~~a-d~qqipal 161 (264)
+.+.+.+++.++.. +--..|.|
T Consensus 91 ~k~~Le~~ierLs~pgg~~dprL 113 (302)
T 3ibp_A 91 RKNAVDEEIERLSQPGGSEDQRL 113 (302)
T ss_dssp HHHHHHHHHHHHHSCCCCCCHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHH
Confidence 88888888777665 33334443
No 140
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=49.07 E-value=21 Score=22.81 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=16.5
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhHhh
Q 024699 65 THLQRELTASKDEIHRLGQIIPKLR 89 (264)
Q Consensus 65 vaLrqeLaaaq~Elqrl~~~~~~l~ 89 (264)
.+++|||++.+.||-.+.--...|+
T Consensus 5 aaikqelaaikkelaaikfelaaik 29 (34)
T 3r4h_A 5 AAIKQELAAIKKELAAIKFELAAIK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888766654444443
No 141
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=49.00 E-value=60 Score=22.04 Aligned_cols=19 Identities=21% Similarity=0.550 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 024699 163 ADIDGIRSELVEARRAFEF 181 (264)
Q Consensus 163 aEie~lrqElqr~Raa~Ey 181 (264)
.+|..++-+|....+.++|
T Consensus 40 ~~l~~~~~~I~~~k~qi~~ 58 (60)
T 3htk_A 40 EKLNTIRDEVIKKKNQNEY 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4445555555555555554
No 142
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=48.99 E-value=2.1e+02 Score=28.24 Aligned_cols=48 Identities=19% Similarity=0.235 Sum_probs=39.8
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024699 170 SELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNT 217 (264)
Q Consensus 170 qElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElana 217 (264)
+-..-+|.-|+|-|..=.+++.+.+++.+||...-.+|.||...|.-.
T Consensus 111 e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q 158 (491)
T 1m1j_A 111 HVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIK 158 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566778888888888899999999999999999999998887643
No 143
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=48.57 E-value=50 Score=28.85 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 024699 162 RADIDGIRSELVEARRAFE 180 (264)
Q Consensus 162 ~aEie~lrqElqr~Raa~E 180 (264)
+++++.++.++..++..++
T Consensus 134 ~a~l~~a~a~l~~a~~~l~ 152 (341)
T 3fpp_A 134 DAQIKRNQASLDTAKTNLD 152 (341)
T ss_dssp HHHHHHTHHHHTTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 3444444444444444443
No 144
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=48.45 E-value=15 Score=28.57 Aligned_cols=60 Identities=23% Similarity=0.246 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhh--hhhhhhhhHHHHHHHH-------HHHHHHHHHHH----HHHHHHHHHhhhh
Q 024699 158 LIAMRADIDGIRSELVEARRA--FEFEKKANEEQIEQKQ-------AMENNLISMAR----EIEKLRAELLNTE 218 (264)
Q Consensus 158 ipal~aEie~lrqElqr~Raa--~EyEKk~~~e~~Eq~q-------aMEknlismar----EvEKLRaElanae 218 (264)
+.++|+|.|++-+|..-.+.- =|||.|.+.-. .-++ .||.+-..|.. ||-.||.||.+..
T Consensus 16 LD~ir~Efe~~~~e~~~~k~q~~~eyE~ki~~Qi-~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~r~ 88 (92)
T 3vp9_A 16 LDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQL-AEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQRD 88 (92)
T ss_dssp -CCTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456788888888887666543 37888854322 2233 34444445543 6999999998754
No 145
>2d4x_A Flagellar HOOK-associated protein 3; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 1.90A {Salmonella typhimurium}
Probab=48.18 E-value=90 Score=26.54 Aligned_cols=74 Identities=15% Similarity=0.170 Sum_probs=42.6
Q ss_pred hhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHHH
Q 024699 102 RGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN---KQLIAMRADIDGIRSELVEA 175 (264)
Q Consensus 102 k~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~---qqipal~aEie~lrqElqr~ 175 (264)
.+.+|.++++..+.+..-+..+..=++.-...-.+++.-++.+..-+..+..+. ....++..|++.|+.||.+.
T Consensus 10 ~~~~l~~~~~~l~q~~~n~~~~~s~l~~ae~aL~~i~~~l~r~rel~vqa~ngt~s~~dr~~i~~e~~~l~~~i~~~ 86 (248)
T 2d4x_A 10 QAVVLSQAQAQNSQYALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTLSDDDRASLATDLQGIRDQLMNL 86 (248)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777776666666666666666666666666665554433211 23445555666666665543
No 146
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=48.09 E-value=17 Score=28.95 Aligned_cols=19 Identities=11% Similarity=-0.088 Sum_probs=7.1
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 024699 183 KKANEEQIEQKQAMENNLI 201 (264)
Q Consensus 183 Kk~~~e~~Eq~qaMEknli 201 (264)
++...+-...=+.+--+|+
T Consensus 67 ~~tw~~A~~~C~~~g~~La 85 (182)
T 3kqg_A 67 PKTWYSAEQFCVSRNSHLT 85 (182)
T ss_dssp CBCHHHHHHHHHHTTCEEC
T ss_pred CCCHHHHHHHHHhCCCEEe
Confidence 3334443333333333333
No 147
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=48.05 E-value=1.8e+02 Score=27.21 Aligned_cols=56 Identities=21% Similarity=0.405 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh
Q 024699 119 EVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARR 177 (264)
Q Consensus 119 El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Ra 177 (264)
|+..+..-...|.+--++|....+.|.++|....++. ..+..+|.+|+=||..+|.
T Consensus 199 e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~lkp~l~ql~k 254 (373)
T 3hhm_B 199 EIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEY---REIDKRMNSIKPDLIQLRK 254 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhccChHHHHHHH
Confidence 4555555555555555666666666666666555554 4566778888888877776
No 148
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=47.84 E-value=69 Score=22.44 Aligned_cols=36 Identities=33% Similarity=0.480 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 117 RAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (264)
Q Consensus 117 k~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ 152 (264)
++.+..+..++..|...-.+|..+|..|..++..+.
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666666666655555555443
No 149
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=47.74 E-value=84 Score=27.65 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 024699 163 ADIDGIRSELVEARRAFE 180 (264)
Q Consensus 163 aEie~lrqElqr~Raa~E 180 (264)
+.|+.++.++..++..++
T Consensus 136 ~~l~~~~~~l~~a~~~l~ 153 (369)
T 4dk0_A 136 ENIKQAEIEVNTAETNLG 153 (369)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 334444444444444443
No 150
>1abz_A Alpha-T-alpha, ATA; de novo design, helix-turn-helix, peptide; HET: SIN; NMR {} SCOP: k.15.1.1
Probab=47.70 E-value=7.4 Score=25.65 Aligned_cols=16 Identities=13% Similarity=0.065 Sum_probs=8.7
Q ss_pred hHHHHHHHhhhhhHhh
Q 024699 74 SKDEIHRLGQIIPKLR 89 (264)
Q Consensus 74 aq~Elqrl~~~~~~l~ 89 (264)
..||||.|.+-..+-.
T Consensus 8 veqelqaleargtdsn 23 (40)
T 1abz_A 8 VEQELQALEARGTDSN 23 (40)
T ss_dssp HHHHHHHHHHTCSSCS
T ss_pred HHHHHHHHHHcCCCch
Confidence 4566666655544444
No 151
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=47.45 E-value=1.4e+02 Score=29.13 Aligned_cols=25 Identities=0% Similarity=-0.141 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 119 EVVQLRAEVQKLNSSRQELTTQIKG 143 (264)
Q Consensus 119 El~q~raE~q~L~~~RQeL~~qvq~ 143 (264)
+-.++..+++.|.+.|..++.+|-.
T Consensus 45 ~~r~~~~~~~~l~~~rN~~sk~i~~ 69 (484)
T 3lss_A 45 KWRRTQFLTEASKKLINICSKAVGA 69 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555544
No 152
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=47.20 E-value=1e+02 Score=24.18 Aligned_cols=62 Identities=24% Similarity=0.347 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhh----------hH------HHHHHHHHHHHHHHHHhhhh
Q 024699 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNR--LEAENKQ----------LI------AMRADIDGIRSELVEARRAF 179 (264)
Q Consensus 118 ~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r--~~ad~qq----------ip------al~aEie~lrqElqr~Raa~ 179 (264)
.++..++-+|..|...++.|..++..|.-+|.+ +++|.-. =| ..+.+|+.|+.|+.++|..+
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555666666666666666666666666665 2222100 11 24567888888888888654
No 153
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=46.91 E-value=56 Score=23.82 Aligned_cols=56 Identities=30% Similarity=0.399 Sum_probs=33.6
Q ss_pred HHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhh--------chhHHHHHHHHHHHHHH
Q 024699 66 HLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRA--------SEPVRAEVVQLRAEVQK 129 (264)
Q Consensus 66 aLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra--------~e~lk~El~q~raE~q~ 129 (264)
.++|.|++.+--||.|--. |.++-.+-..++-.|.||++ ++++++|....|-|+|.
T Consensus 6 efkqrlaaiktrlqalggs--------eaelaafekeiaafeselqaykgkgnpevealrkeaaairdelqa 69 (73)
T 2a3d_A 6 EFKQRLAAIKTRLQALGGS--------EAELAAFEKEIAAFESELQAYKGKGNPEVEALRKEAAAIRDELQA 69 (73)
T ss_dssp HHHHHHHHHHHHHHHCSSG--------GGTHHHHHHHHHHHHHHHHHSSSCCSSTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHH
Confidence 4677777777777666422 22223333445666777765 46777777777666553
No 154
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=46.90 E-value=1.8e+02 Score=26.87 Aligned_cols=31 Identities=6% Similarity=-0.064 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Q 024699 165 IDGIRSELVEARRAFEFEKKANEEQIEQKQA 195 (264)
Q Consensus 165 ie~lrqElqr~Raa~EyEKk~~~e~~Eq~qa 195 (264)
.+.|.+|++..|..++-+.+...+..++.+.
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (487)
T 3oja_A 419 YEEMYVEQQSVQNNAIRDWDMYQHKETQLAE 449 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcchhhhhhhhhHHHHHHH
Confidence 3445555555554444444444444444443
No 155
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=46.58 E-value=88 Score=27.97 Aligned_cols=29 Identities=21% Similarity=0.100 Sum_probs=17.5
Q ss_pred hhHhhhhhHHHHHHHHHhhhhhHHhhhhc
Q 024699 85 IPKLRADKEAHTRELFDRGLKLEVELRAS 113 (264)
Q Consensus 85 ~~~l~ae~e~q~R~l~ek~~KmEAelra~ 113 (264)
+..+-..-.--+..+-+++..+|.++...
T Consensus 162 ld~ivd~~~~~l~~l~~~i~~lE~~l~~~ 190 (339)
T 4ev6_A 162 LNEITRSYSRILMNLEDELEELEDKLLAG 190 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34444333445666777778888777654
No 156
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=46.49 E-value=95 Score=23.65 Aligned_cols=6 Identities=33% Similarity=0.329 Sum_probs=2.7
Q ss_pred HHHHHH
Q 024699 124 RAEVQK 129 (264)
Q Consensus 124 raE~q~ 129 (264)
.+||+.
T Consensus 20 eaEIqA 25 (81)
T 1wt6_A 20 EEEVLT 25 (81)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 157
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=46.20 E-value=63 Score=24.79 Aligned_cols=31 Identities=10% Similarity=-0.187 Sum_probs=16.8
Q ss_pred HHHHhhhhhHhhhhhHHHHHHHHHhhhhhHH
Q 024699 78 IHRLGQIIPKLRADKEAHTRELFDRGLKLEV 108 (264)
Q Consensus 78 lqrl~~~~~~l~ae~e~q~R~l~ek~~KmEA 108 (264)
...|...+..+...-+.++..+-..+..+|+
T Consensus 21 ~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~ 51 (95)
T 3mov_A 21 SRACLERIQELEDLLAKEKDNSRRMLTDKER 51 (95)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555556655556665554
No 158
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=45.88 E-value=59 Score=22.95 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 024699 160 AMRADIDGIRSELVEARRA 178 (264)
Q Consensus 160 al~aEie~lrqElqr~Raa 178 (264)
.|+.+|+.|+.|++.++.-
T Consensus 41 ~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 41 ALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455556666666555543
No 159
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=45.66 E-value=23 Score=32.26 Aligned_cols=46 Identities=13% Similarity=0.222 Sum_probs=32.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHH
Q 024699 152 EAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNL 200 (264)
Q Consensus 152 ~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknl 200 (264)
....+++..|.++++.|..|+.++...++-.+|++.+. .+.|+|++
T Consensus 181 n~~~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~~r---l~~Lqk~~ 226 (315)
T 2ve7_A 181 NVDAFKLESLEAKNRALNEQIARLEQERSTANKANAER---LKRLQKSA 226 (315)
T ss_dssp TCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---TTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH---HHHHHHHH
Confidence 44566778888888888888888888777777765444 34455554
No 160
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=45.32 E-value=1e+02 Score=29.38 Aligned_cols=35 Identities=11% Similarity=0.209 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (264)
Q Consensus 118 ~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ 152 (264)
+++..+-.+-++|....++|.++...+++++.++.
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~ 65 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRR 65 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555555555555555555555555555554433
No 161
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=45.31 E-value=95 Score=23.32 Aligned_cols=30 Identities=13% Similarity=0.234 Sum_probs=21.4
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Q 024699 153 AENKQLIAMRADIDGIRSELVEARRAFEFE 182 (264)
Q Consensus 153 ad~qqipal~aEie~lrqElqr~Raa~EyE 182 (264)
+..+.+-.|..-|+.|++|+..+|..+|.-
T Consensus 17 ~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~ 46 (83)
T 2xdj_A 17 AHSQLLTQLQQQLSDNQSDIDSLRGQIQEN 46 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 344556667778888888888888887753
No 162
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=44.42 E-value=70 Score=24.63 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 024699 141 IKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (264)
Q Consensus 141 vq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 179 (264)
|+.||+||+.+..+. -| +||-.-.+-|-++|+++
T Consensus 38 i~~Lt~eLq~A~~ea--Np---aeIA~~~~~L~qAraDL 71 (90)
T 4b6x_A 38 VNNLTDELQDAIDEA--NP---AEIANTSQQLRHARADL 71 (90)
T ss_dssp HHHHHHHHHHHHHTT--CH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc--CH---HHHHhHHHHHHHHHHHH
Confidence 666777777665544 22 45555555566666554
No 163
>1twf_C B44.5, DNA-directed RNA polymerase II 45 kDa polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.1 d.181.1.1 PDB: 1i3q_C 1i6h_C 1k83_C* 1nik_C 1nt9_C 1pqv_C 1r5u_C 1r9s_C* 1r9t_C* 1sfo_C* 1twa_C* 1twc_C* 1i50_C* 1twg_C* 1twh_C* 1wcm_C 1y1v_C 1y1w_C 1y1y_C 1y77_C* ...
Probab=44.22 E-value=9.5 Score=35.26 Aligned_cols=15 Identities=27% Similarity=0.598 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCC
Q 024699 238 MRYPGGAFDNGYGGAW 253 (264)
Q Consensus 238 ~~~~~~~Y~~~Yg~~w 253 (264)
.+|+.++|+ |||++|
T Consensus 304 ~~~~~~~~~-~~~~~~ 318 (318)
T 1twf_C 304 SQMGNTGSG-GYDNAW 318 (318)
T ss_dssp ----------------
T ss_pred CCCCCcccC-CcCCCC
Confidence 344446777 888888
No 164
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=43.02 E-value=48 Score=24.61 Aligned_cols=55 Identities=24% Similarity=0.291 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 024699 117 RAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEA 175 (264)
Q Consensus 117 k~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~ 175 (264)
+.||.++-.+|.+|.....+|..++..-. =...|...+..+.++++.+.++|..+
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~----~y~~d~~~~~~l~~~l~~~e~eLe~~ 75 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADAS----FFSQPHEQTQKVLADMAAAEQELEQA 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTT----GGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcc----cccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666665555554444443200 00123333444445555555555443
No 165
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=42.94 E-value=1.3e+02 Score=29.21 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVN 149 (264)
Q Consensus 118 ~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~ 149 (264)
+++..+-.+-++|...-++|.++...+++++.
T Consensus 33 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~ 64 (485)
T 3qne_A 33 DEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIG 64 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444443
No 166
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=42.85 E-value=46 Score=24.98 Aligned_cols=53 Identities=25% Similarity=0.390 Sum_probs=31.2
Q ss_pred cccccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHH
Q 024699 56 ENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQK 129 (264)
Q Consensus 56 dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~ 129 (264)
+|.-|-.+-++||.+|..-.+||++|...+. ++ -+..|.|.+|+.-+-.|.--
T Consensus 12 ~~~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~-lk--------------------~kd~ErLNDEiislNIENNl 64 (75)
T 3a7o_A 12 HDDALLNTLAILQKELKSKEQEIRRLKEVIA-LK--------------------NKNTERLNDELISGTIENNV 64 (75)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--------------------cccHHHhhHHHHHhHHHHHH
Confidence 3434444667777777777777777765443 11 12445677777766665543
No 167
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=42.84 E-value=1.5e+02 Score=25.22 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=14.0
Q ss_pred HHHHHHhhHHHHHHHhhhhhHhh
Q 024699 67 LQRELTASKDEIHRLGQIIPKLR 89 (264)
Q Consensus 67 LrqeLaaaq~Elqrl~~~~~~l~ 89 (264)
|-.+...+.+|||.-.+++.++.
T Consensus 36 l~e~y~r~sqEiq~Kr~AieAF~ 58 (170)
T 3l4q_C 36 LYEEYTRTSQELQMKRTAIEAFN 58 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHH
Confidence 44555666667776666666544
No 168
>3pwx_A Putative flagellar HOOK-associated protein; structural genomics, structural protein, PSI-2, protein STRU initiative; 2.50A {Vibrio parahaemolyticus}
Probab=42.50 E-value=1.5e+02 Score=25.55 Aligned_cols=73 Identities=14% Similarity=0.197 Sum_probs=41.5
Q ss_pred hhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHHHH
Q 024699 102 RGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE---NKQLIAMRADIDGIRSELVE 174 (264)
Q Consensus 102 k~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad---~qqipal~aEie~lrqElqr 174 (264)
.+.+|..+++..+.+..-+..+..=++.-...-++++.-++.+..-+.++..+ -...-++..||+.|+.||..
T Consensus 12 ~~~~l~~~i~~l~q~~~N~~~a~s~l~~ae~aL~~i~~~l~r~rel~vqa~ngt~s~~dr~ai~~E~~~l~~~i~~ 87 (239)
T 3pwx_A 12 KLLNLERENSAIAQYQSNIANLKTTLSSQETHLDSVSESLKSMRDIVLWGANGSLTDQDRSGMITELKSYRDSIES 87 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777767766666666666666666666666666665544443221 12334555555555555443
No 169
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=42.44 E-value=1.6e+02 Score=25.18 Aligned_cols=41 Identities=10% Similarity=0.255 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh
Q 024699 115 PVRAEVVQLRAEVQKLNSSRQELTTQI-KGLTKDVNRLEAEN 155 (264)
Q Consensus 115 ~lk~El~q~raE~q~L~~~RQeL~~qv-q~l~qeL~r~~ad~ 155 (264)
.++.=...+..++..++.....++..+ ..+.+.|.....|.
T Consensus 64 s~~~aw~~~~~~~e~~a~~h~~~a~~l~~~v~~~l~~~~~e~ 105 (290)
T 3i2w_A 64 TTEAAWKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQKEN 105 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777778888888887777 44667777666654
No 170
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=42.09 E-value=1.1e+02 Score=23.06 Aligned_cols=52 Identities=21% Similarity=0.287 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 163 ADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAEL 214 (264)
Q Consensus 163 aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaEl 214 (264)
..++..+.||+-+|.+=+.-+++...+-+=+.-|+..-..+-..|+.|+.-.
T Consensus 18 E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~ 69 (78)
T 3iv1_A 18 EEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKD 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666677777777777777777777777777777777543
No 171
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=42.08 E-value=1.6e+02 Score=25.04 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q 024699 115 PVRAEVVQLRAEVQKLNSSRQELTTQI-KGLTKDVNRLEAENKQL-IAMRADIDGIRSELVEARRAFEFEKKANEEQ 189 (264)
Q Consensus 115 ~lk~El~q~raE~q~L~~~RQeL~~qv-q~l~qeL~r~~ad~qqi-pal~aEie~lrqElqr~Raa~EyEKk~~~e~ 189 (264)
.+..=...+..++..++.....++..+ ..+.+.|.....+..+. -.+..++..+.++++..-..++--|+.|...
T Consensus 66 t~~~~w~~~l~~~e~~a~~h~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~ 142 (301)
T 2efk_A 66 SQQQSFVQILQEVNDFAGQRELVAENLSVRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERD 142 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333434455555666666666666555 33455555555444332 2233444555555555444444444444333
No 172
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=41.72 E-value=97 Score=22.56 Aligned_cols=35 Identities=29% Similarity=0.469 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhhh--------hhHHHHHHHHHHHHHHHHHh
Q 024699 142 KGLTKDVNRLEAENK--------QLIAMRADIDGIRSELVEAR 176 (264)
Q Consensus 142 q~l~qeL~r~~ad~q--------qipal~aEie~lrqElqr~R 176 (264)
..+.+|++-..+++| .+.+|+.|--.+|.|||--|
T Consensus 29 aafekeiaafeselqaykgkgnpevealrkeaaairdelqayr 71 (73)
T 2a3d_A 29 AAFEKEIAAFESELQAYKGKGNPEVEALRKEAAAIRDELQAYR 71 (73)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCSSTTTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhh
Confidence 345556665566555 46788888888888888655
No 173
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=41.51 E-value=50 Score=25.74 Aligned_cols=35 Identities=17% Similarity=0.473 Sum_probs=24.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 024699 146 KDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (264)
Q Consensus 146 qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~E 180 (264)
.|.+|----+-++.-|..||+.+..+|.-.|+.|+
T Consensus 46 DeFAKWaKL~Rk~DKl~~ele~l~~~l~~~k~~F~ 80 (93)
T 3sjb_C 46 DNYAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQ 80 (93)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455667777888888888888888876
No 174
>2oeq_A Protein of unknown function, DUF964; helix bundle, structural genomics, PSI-2, protein structure initiative; 2.90A {Geobacillus stearothermophilus} SCOP: a.281.1.2
Probab=41.36 E-value=62 Score=25.13 Aligned_cols=100 Identities=14% Similarity=0.234 Sum_probs=50.5
Q ss_pred HHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHH
Q 024699 97 RELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENK-QLIAMRADIDGIRSELVEA 175 (264)
Q Consensus 97 R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~q-qipal~aEie~lrqElqr~ 175 (264)
..+||++-.|...|+..+.+ ..+..+...+.. ...=+.|-.+.+.+..+++..+.--+ -.|....+++.+..+++
T Consensus 6 ~~I~d~A~eL~~~I~~seEy-~~~k~A~~~l~~-D~ea~~li~~F~~~q~~~q~~q~~G~~~~~e~~~~l~~l~~~l~-- 81 (122)
T 2oeq_A 6 EPLHALARQLEQAIRASEPF-QQLKRAYEDVRR-DETAYRMFANVRDIQLRLHEKQMRGAAILPDEIEQAQKAMALAQ-- 81 (122)
T ss_dssp CTTHHHHHHHHHHHHHSHHH-HHHHHHHHHHHT-CTTHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHhCHHH-HHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHh--
Confidence 35788888888888888877 556655554433 11122233333334444443332221 12444455544444443
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 176 RRAFEFEKKANEEQIEQKQAMENNLISMAREIEKL 210 (264)
Q Consensus 176 Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKL 210 (264)
..+.+-....-|..|-.|-.+|-+.
T Consensus 82 ----------~n~~v~~~~~Ae~~l~~ll~~I~~i 106 (122)
T 2oeq_A 82 ----------QNEKLARLMALEQQMSITIAEVQQI 106 (122)
T ss_dssp ----------TSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233444444455666666665554
No 175
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=41.26 E-value=1.6e+02 Score=24.73 Aligned_cols=88 Identities=13% Similarity=0.193 Sum_probs=37.6
Q ss_pred hHHHHHHHHhhHHHHHHHhhhhh---HhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 64 NTHLQRELTASKDEIHRLGQIIP---KLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQ 140 (264)
Q Consensus 64 hvaLrqeLaaaq~Elqrl~~~~~---~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~q 140 (264)
+-.|.+.+.....-+.-|...+. .|..|--..+..|..+..+- .+..+ ++.=...+..++.+++.....++..
T Consensus 20 ~~~l~~~~~~g~~~~~el~~f~~eRa~iE~eYak~L~kLa~~~~~~-~~~gs---~~~~w~~~~~~~e~~a~~h~~~a~~ 95 (276)
T 2v0o_A 20 FDVLYHNMKHGQISTKELADFVRERATIEEAYSRSMTKLAKSASNY-SQLGT---FAPVWDVFKTSTEKLANCHLDLVRK 95 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CCCSS---SGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCcch---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555444444443332 22222224445555443321 11111 2122233444555555555555555
Q ss_pred HHHHHHHHHHHHHhh
Q 024699 141 IKGLTKDVNRLEAEN 155 (264)
Q Consensus 141 vq~l~qeL~r~~ad~ 155 (264)
+..+.+.|.....+.
T Consensus 96 l~~~~~~l~~~~~~~ 110 (276)
T 2v0o_A 96 LQELIKEVQKYGEEQ 110 (276)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 554445555444444
No 176
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=40.94 E-value=59 Score=29.94 Aligned_cols=60 Identities=13% Similarity=0.238 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----HhhhhhHHHHHHHHHHHHHHH
Q 024699 114 EPVRAEVVQLRAEVQ----KLNSSRQELTTQIKGLTKDVNRLE----AENKQLIAMRADIDGIRSELV 173 (264)
Q Consensus 114 e~lk~El~q~raE~q----~L~~~RQeL~~qvq~l~qeL~r~~----ad~qqipal~aEie~lrqElq 173 (264)
+.|+..+.+....++ .|..++..|......+......+. ++...|+.|+.+|+.++.++.
T Consensus 126 ~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 126 TDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSVN 193 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 444444444444443 334444555555555544444333 344456677777777666665
No 177
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=40.74 E-value=27 Score=31.56 Aligned_cols=16 Identities=38% Similarity=0.677 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHHHH
Q 024699 115 PVRAEVVQLRAEVQKL 130 (264)
Q Consensus 115 ~lk~El~q~raE~q~L 130 (264)
.++.|+.+++.|+++|
T Consensus 79 ~ar~El~~LkeElerL 94 (251)
T 3m9b_A 79 EARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444444444444443
No 178
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=40.71 E-value=2.7e+02 Score=27.20 Aligned_cols=30 Identities=13% Similarity=0.189 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024699 189 QIEQKQAMENNLISMAREIEKLRAELLNTE 218 (264)
Q Consensus 189 ~~Eq~qaMEknlismarEvEKLRaElanae 218 (264)
+-.+.+.+..-+.++.+.|.+|...+..-+
T Consensus 161 ~~~~i~~l~~~~~~~~~~i~~l~~~~~~~~ 190 (461)
T 3ghg_B 161 IPTNLRVLRSILENLRSKIQKLESDVSAQM 190 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444566666667777788888888887553
No 179
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=40.65 E-value=2.2e+02 Score=26.12 Aligned_cols=20 Identities=10% Similarity=0.312 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHHHHh
Q 024699 157 QLIAMRADIDGIRSELVEAR 176 (264)
Q Consensus 157 qipal~aEie~lrqElqr~R 176 (264)
+|..+.++|+.++.|+.+.|
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 451 EITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 44555566666666666655
No 180
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=40.57 E-value=1.2e+02 Score=23.01 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhh
Q 024699 162 RADIDGIRSELVEARRAFEFEKKA 185 (264)
Q Consensus 162 ~aEie~lrqElqr~Raa~EyEKk~ 185 (264)
..++|.....+..+...++...|.
T Consensus 57 E~eld~~~e~l~~a~~kLe~~ek~ 80 (101)
T 3u59_A 57 EDEVEKYSESVKEAQEKLEQAEKK 80 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 181
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=40.41 E-value=2.9e+02 Score=27.53 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 117 RAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVN 149 (264)
Q Consensus 117 k~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~ 149 (264)
++|+-++.++++.+.+.+.-++.+.+...+.|.
T Consensus 362 rNEItsaeSaInslqaqvSa~t~e~k~A~d~l~ 394 (602)
T 1cii_A 362 RNKITSAESAVNSARNNLSARTNEQKHANDALN 394 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444333
No 182
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=40.27 E-value=61 Score=23.73 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=9.2
Q ss_pred hhhhhHHHHHHHHHhhhhhH
Q 024699 88 LRADKEAHTRELFDRGLKLE 107 (264)
Q Consensus 88 l~ae~e~q~R~l~ek~~KmE 107 (264)
++.=++.+|.+|=+++..||
T Consensus 23 fReRK~~~i~~LE~~v~~le 42 (70)
T 1gd2_E 23 FRKRKEDHLKALETQVVTLK 42 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555544444444
No 183
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=40.25 E-value=1.5e+02 Score=24.03 Aligned_cols=106 Identities=18% Similarity=0.249 Sum_probs=60.1
Q ss_pred HHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHH
Q 024699 96 TRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ--LIAMRADIDGIRSELV 173 (264)
Q Consensus 96 ~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qq--ipal~aEie~lrqElq 173 (264)
+..++|++-.|...|+..+.+ .++..+...++.= ..=+.|-.+.+.+.+++...+.--+. ......+++.+..+|.
T Consensus 6 ~~~I~d~A~eL~~aI~eseey-k~yk~A~~~i~~D-~eaq~li~eF~~~Q~~~~~~q~~Gk~~~~~e~~~el~~l~~~l~ 83 (151)
T 2pih_A 6 KKDIVQQARNLAKMISETEEV-DFFKRAEAQINEN-DKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQEELE 83 (151)
T ss_dssp HHHHHHHHHHHHHHHTTBHHH-HHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHH-HHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHH
Confidence 467899999999999999988 6777777666541 12223333344444444443332211 2333444444444443
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024699 174 EARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELL 215 (264)
Q Consensus 174 r~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaEla 215 (264)
. .+.+.....-|..|-.|-.+|-+.=++--
T Consensus 84 ~------------np~V~~y~~Ae~~l~~LL~~I~~iI~~~I 113 (151)
T 2pih_A 84 E------------IPVIQEFRDSQMEVNDLLQLVAHTISNQV 113 (151)
T ss_dssp H------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 34444555556777777777766555433
No 184
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=40.12 E-value=1.1e+02 Score=22.54 Aligned_cols=22 Identities=5% Similarity=0.354 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024699 193 KQAMENNLISMAREIEKLRAEL 214 (264)
Q Consensus 193 ~qaMEknlismarEvEKLRaEl 214 (264)
...+++.+-.+-.++++|+..|
T Consensus 81 i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 81 EKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 185
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=39.95 E-value=2.4e+02 Score=28.31 Aligned_cols=84 Identities=13% Similarity=0.273 Sum_probs=47.1
Q ss_pred HHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 66 HLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLT 145 (264)
Q Consensus 66 aLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~ 145 (264)
.||..+....++|+.| .+++.+=+.+...+.-+..-++..-.....++++...+...+..|.-.|+++..+...+-
T Consensus 24 ~lr~~~q~~e~~ik~L----e~~Qe~f~~~yk~~q~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~R~e~~~k~~~~l 99 (596)
T 1bg1_A 24 DVRKRVQDLEQKMKVV----ENLQDDFDFNYKTLKSQGDMQDLNGNNQSVTRQKMQQLEQMLTALDQMRRSIVSELAGLL 99 (596)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTTCC---------CCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666 444544445555554221111111122234666777788888999999999998777755
Q ss_pred HHHHHHHH
Q 024699 146 KDVNRLEA 153 (264)
Q Consensus 146 qeL~r~~a 153 (264)
..+..++.
T Consensus 100 ~~~~~lq~ 107 (596)
T 1bg1_A 100 SAMEYVQK 107 (596)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55444433
No 186
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=39.95 E-value=1.1e+02 Score=22.50 Aligned_cols=37 Identities=11% Similarity=0.168 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Q 024699 126 EVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMR 162 (264)
Q Consensus 126 E~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~ 162 (264)
|.+.+...-..|.++++.+..|+++...|-|.+-.+|
T Consensus 6 e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniK 42 (74)
T 2xv5_A 6 ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIK 42 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444444443
No 187
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=39.58 E-value=94 Score=29.13 Aligned_cols=44 Identities=16% Similarity=0.123 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 024699 128 QKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSE 171 (264)
Q Consensus 128 q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqE 171 (264)
..|.....+|..+++.+..++..+...+..--.++..+.+.-+|
T Consensus 13 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~e 56 (403)
T 4etp_A 13 AALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQE 56 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444433333333333333333333
No 188
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=39.55 E-value=1.6e+02 Score=24.76 Aligned_cols=18 Identities=22% Similarity=0.200 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhhhhhccc
Q 024699 205 REIEKLRAELLNTERRAC 222 (264)
Q Consensus 205 rEvEKLRaElanae~ra~ 222 (264)
.+++.++..+.+..-||.
T Consensus 119 a~l~~a~~~l~~~~I~AP 136 (277)
T 2f1m_A 119 AAVETARINLAYTKVTSP 136 (277)
T ss_dssp HHHHHHHHHHHTTEECCS
T ss_pred HHHHHHHHHhhcCEEECC
Confidence 456677777777777774
No 189
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=39.48 E-value=1e+02 Score=24.45 Aligned_cols=12 Identities=0% Similarity=0.238 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 024699 142 KGLTKDVNRLEA 153 (264)
Q Consensus 142 q~l~qeL~r~~a 153 (264)
.+++++|...+.
T Consensus 7 ~al~~eL~~~~~ 18 (106)
T 4e61_A 7 VAIQAELTKSQE 18 (106)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344455544444
No 190
>3v47_C Flagellin; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Salmonella enterica subsp}
Probab=38.51 E-value=1.2e+02 Score=29.25 Aligned_cols=77 Identities=6% Similarity=0.082 Sum_probs=44.4
Q ss_pred HhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHHHHHhh
Q 024699 101 DRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE---NKQLIAMRADIDGIRSELVEARR 177 (264)
Q Consensus 101 ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad---~qqipal~aEie~lrqElqr~Ra 177 (264)
-.+.+|.++++..+....-+....+=+|.-...-++.+.-+|.|.+-..++..+ -...-++..||+.|+.||.+.=.
T Consensus 8 AIa~~lrsqi~gl~Qa~rN~~dgiS~lqtAEgAL~~i~~iLqRmRELaVQAaNgT~s~~DR~aIq~Ei~qL~~eI~~Ian 87 (425)
T 3v47_C 8 AIANRFTSNIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELSVQATNGTNSDSDLKSIQDEIQQRLEEIDRVSN 87 (425)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346778888888888888888888888887788888888888877665555443 23456777788888888777644
No 191
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=38.14 E-value=1.8e+02 Score=24.58 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024699 187 EEQIEQKQAMENNLISMARE 206 (264)
Q Consensus 187 ~e~~Eq~qaMEknlismarE 206 (264)
.+.++++|.||...+...++
T Consensus 215 ~~~~~~lQ~le~~r~~~lk~ 234 (305)
T 2efl_A 215 PNIFQKIQEMEERRIVRMGE 234 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566777777766655554
No 192
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=38.11 E-value=22 Score=31.07 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=22.6
Q ss_pred hhhHHHHHHHHHHhhhhcccccccccchHHHHHHHHhhHHHHHHHhhhhhHhh
Q 024699 37 MTLEEEIEIQRREMHRIISENRHAIDDNTHLQRELTASKDEIHRLGQIIPKLR 89 (264)
Q Consensus 37 ~~LEe~l~~Q~~EiqrLl~dNqRLaathvaLrqeLaaaq~Elqrl~~~~~~l~ 89 (264)
..++++|..-|-.|+.|..+|.+|. ++|....+||..|...+.+++
T Consensus 9 ~~~q~ql~~ad~LV~~L~~En~~L~-------~ql~~k~~ei~~L~~ql~sl~ 54 (190)
T 4emc_A 9 NSVKQQIDSADLLVANLVNENFVLS-------EKLDTKATEIKQLQKQIDSLN 54 (190)
T ss_dssp -----------CHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999987665 455555555555554444444
No 193
>3lnr_A Aerotaxis transducer AER2; HAMP domain, poly-HAMP domains, signaling protein; 2.64A {Pseudomonas aeruginosa}
Probab=38.06 E-value=1.6e+02 Score=23.98 Aligned_cols=74 Identities=9% Similarity=0.074 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH----hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024699 143 GLTKDVNRLEAENKQLIAMRADIDGIRSELVEA----RRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLN 216 (264)
Q Consensus 143 ~l~qeL~r~~ad~qqipal~aEie~lrqElqr~----Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElan 216 (264)
.|...|...-.+++.+-.+..|+..+-++...+ |...+.-+..+.+..+-+-.|=.+++...+++-..=..+++
T Consensus 53 ~M~~~L~~~v~~i~~v~~l~~e~~~~a~~~~~Gdl~~R~d~~~~~G~~~~l~~~vN~~~~~~~~~~~~~~~v~~~~a~ 130 (175)
T 3lnr_A 53 ALQRQLREQRAELQQVESLEAGLAEMSRQHEAGWIDQTIPAERLEGRAARIAKGVNELVAAHIAVKMKVVSVVTAYGQ 130 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCCCCGGGCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccCccccChHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhC
Confidence 344444444444445667778888888888766 67777777889999999999999999988887666655553
No 194
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=37.40 E-value=2.7e+02 Score=27.01 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNR 150 (264)
Q Consensus 118 ~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r 150 (264)
+++..+-.+-++|....++|.++...+++++.+
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~ 102 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRA 102 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555544
No 195
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=37.26 E-value=1.5e+02 Score=23.30 Aligned_cols=24 Identities=13% Similarity=0.292 Sum_probs=16.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhh
Q 024699 155 NKQLIAMRADIDGIRSELVEARRA 178 (264)
Q Consensus 155 ~qqipal~aEie~lrqElqr~Raa 178 (264)
..++-.|..||..|.|+|+-++..
T Consensus 66 q~~v~elqgEI~~Lnq~Lqda~~~ 89 (99)
T 3ni0_A 66 QARIKELENEVTKLNQELENLRIQ 89 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335667777888888888777743
No 196
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=37.06 E-value=1.7e+02 Score=29.07 Aligned_cols=34 Identities=15% Similarity=0.324 Sum_probs=26.3
Q ss_pred cccchHHHHHHHHhhHHHHHHHhhhhhHhhhhhH
Q 024699 60 AIDDNTHLQRELTASKDEIHRLGQIIPKLRADKE 93 (264)
Q Consensus 60 LaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~e 93 (264)
|-..|-++..+|.+.+..++.+......+....-
T Consensus 409 ll~kh~~f~~el~~~~~~v~~l~~~~~~L~~~~~ 442 (863)
T 1sjj_A 409 LLKKHEAFESDLAAHQDRVEQIAAIAQELNELDY 442 (863)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 4457888888998888888888888777775543
No 197
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=36.49 E-value=1.4e+02 Score=22.88 Aligned_cols=44 Identities=16% Similarity=0.219 Sum_probs=32.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHH
Q 024699 155 NKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMEN 198 (264)
Q Consensus 155 ~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEk 198 (264)
.+-|..|...|+..++++..++..++.-++.-.+..-..+++|+
T Consensus 73 ~~fi~~L~~~I~~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~ 116 (150)
T 3ajw_A 73 QQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWREKKQRLQAWQT 116 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466777778888888888888888777777777777777764
No 198
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=36.34 E-value=68 Score=23.48 Aligned_cols=37 Identities=24% Similarity=0.250 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 024699 135 QELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVE 174 (264)
Q Consensus 135 QeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr 174 (264)
.+|..+|..|......+..++ -.|+.+|+.|+.|+..
T Consensus 32 ~~LE~~v~~le~~~~~l~~en---~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 32 KALETQVVTLKELHSSTTLEN---DQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 344444444444444444443 2344555555555544
No 199
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=36.29 E-value=1.3e+02 Score=22.29 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 123 LRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (264)
Q Consensus 123 ~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ 152 (264)
+..+|..|.....||..++..+.+++.++.
T Consensus 4 L~k~i~~l~~E~eel~~klk~~~ee~~~~~ 33 (71)
T 1s1c_X 4 LTKDIEILRRENEELTEKMKKAEEEYKLEK 33 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888888888888888877655
No 200
>1wlx_A Alpha-actinin 4; three-helix bundle, protein binding; NMR {Homo sapiens}
Probab=36.17 E-value=1.3e+02 Score=24.37 Aligned_cols=53 Identities=11% Similarity=0.095 Sum_probs=42.4
Q ss_pred HhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHhhhhhHH
Q 024699 108 VELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGL--------------TKDVNRLEAENKQLIA 160 (264)
Q Consensus 108 Aelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l--------------~qeL~r~~ad~qqipa 160 (264)
+=+.+++..|+.|-++..|.+.|...-++|...+++. ..+|.+....++++-.
T Consensus 49 ~L~~~He~F~~~L~~a~~e~~~i~~i~~el~~~~~~~~~~~~~~npYT~it~~~l~~~W~~l~~li~ 115 (129)
T 1wlx_A 49 GLISAHDQFKSTLPDADREREAILAIHKEAQRIAESNHIKLSGSNPYTTVTPQIINSKWEKVQQLVP 115 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSSSCSSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCCCccchHHHHHHHHHHHHHHHH
Confidence 4456889999999999999999999999999888663 4677777777766543
No 201
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=35.52 E-value=79 Score=29.28 Aligned_cols=13 Identities=15% Similarity=0.235 Sum_probs=6.5
Q ss_pred HHHHHHhhhhhHH
Q 024699 96 TRELFDRGLKLEV 108 (264)
Q Consensus 96 ~R~l~ek~~KmEA 108 (264)
+..|.+++.++|.
T Consensus 7 ~~~~~~~~~~~e~ 19 (323)
T 1lwu_C 7 VQKILEEVRILEQ 19 (323)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555554
No 202
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=35.14 E-value=1.3e+02 Score=22.05 Aligned_cols=24 Identities=8% Similarity=0.191 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 024699 131 NSSRQELTTQIKGLTKDVNRLEAE 154 (264)
Q Consensus 131 ~~~RQeL~~qvq~l~qeL~r~~ad 154 (264)
...|+.+...+..+..+|+++++|
T Consensus 4 ~~e~~~~~~~i~~lE~eL~~~r~e 27 (74)
T 2xv5_A 4 ARERDTSRRLLAEKEREMAEMRAR 27 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 203
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=34.76 E-value=42 Score=27.69 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 024699 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN--------KQLIAMRADIDGIRSELVEARRAFEFEKKA 185 (264)
Q Consensus 116 lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~--------qqipal~aEie~lrqElqr~Raa~EyEKk~ 185 (264)
+=.||+..++-+..=...++-|..+...+++++.-+.+++ -++.-|+-.+++|..+|.==|.+...||..
T Consensus 7 L~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~~~~eEKrk 84 (130)
T 3cl3_D 7 SLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKRK 84 (130)
T ss_dssp --------------------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356666666444444555666666666666666665554 234455555666666666666666666654
No 204
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=34.38 E-value=1.4e+02 Score=23.31 Aligned_cols=23 Identities=17% Similarity=0.005 Sum_probs=9.3
Q ss_pred hHhhhhhHHHHHHHHHhhhhhHH
Q 024699 86 PKLRADKEAHTRELFDRGLKLEV 108 (264)
Q Consensus 86 ~~l~ae~e~q~R~l~ek~~KmEA 108 (264)
.....|-+.+|..|-.++.+||.
T Consensus 46 d~t~~eL~~EI~~L~~eI~~LE~ 68 (96)
T 1t3j_A 46 DMTQKHLEEEIARLSKEIDQLEK 68 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444443
No 205
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=33.72 E-value=1.6e+02 Score=22.98 Aligned_cols=46 Identities=13% Similarity=0.182 Sum_probs=20.4
Q ss_pred HHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHH
Q 024699 78 IHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQL 123 (264)
Q Consensus 78 lqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~ 123 (264)
-|.|+.+...+...-|.-..+|-+.+..|+.++...|.+-.++..+
T Consensus 31 QqELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~L 76 (96)
T 1t3j_A 31 QQEMATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLL 76 (96)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444555566665555544444444444444444444443333333
No 206
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=33.62 E-value=1.5e+02 Score=22.33 Aligned_cols=8 Identities=38% Similarity=0.464 Sum_probs=3.3
Q ss_pred HhhhhhHH
Q 024699 101 DRGLKLEV 108 (264)
Q Consensus 101 ek~~KmEA 108 (264)
+++-.+|+
T Consensus 23 d~ae~~e~ 30 (101)
T 3u59_A 23 DRAEQAEA 30 (101)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444444
No 207
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=33.61 E-value=1.2e+02 Score=20.90 Aligned_cols=35 Identities=26% Similarity=0.338 Sum_probs=17.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024699 182 EKKANEEQIEQKQAMENNLISMAREIEKLRAELLN 216 (264)
Q Consensus 182 EKk~~~e~~Eq~qaMEknlismarEvEKLRaElan 216 (264)
-||.|..+---.|.+||=+..+--||-.|..|+++
T Consensus 15 lkkdnlqlerdeqnlekiianlrdeiarlenevas 49 (52)
T 3he5_B 15 LKKDNLQLERDEQNLEKIIANLRDEIARLENEVAS 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444344455566555555566666555554
No 208
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=33.55 E-value=3.4e+02 Score=26.32 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHHHHH
Q 024699 115 PVRAEVVQLRAEVQKL 130 (264)
Q Consensus 115 ~lk~El~q~raE~q~L 130 (264)
.++.+|+++.-.++.|
T Consensus 97 ~V~~~LqeLe~~l~~l 112 (464)
T 1m1j_B 97 TVKPVLRDLKDRVAKF 112 (464)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHH
Confidence 4455555555555554
No 209
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=33.27 E-value=1.6e+02 Score=22.39 Aligned_cols=21 Identities=5% Similarity=0.311 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 024699 160 AMRADIDGIRSELVEARRAFE 180 (264)
Q Consensus 160 al~aEie~lrqElqr~Raa~E 180 (264)
.+..|++++.-.+.++.+-++
T Consensus 71 e~~dE~~Sl~~q~~~~~~qLd 91 (96)
T 3q8t_A 71 ELDDELKSVENQMRYAQMQLD 91 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 210
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=33.06 E-value=84 Score=22.26 Aligned_cols=10 Identities=0% Similarity=0.248 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 024699 162 RADIDGIRSE 171 (264)
Q Consensus 162 ~aEie~lrqE 171 (264)
.+||+.|+++
T Consensus 50 ~~ev~~Lr~~ 59 (63)
T 2dgc_A 50 ENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 211
>2bsg_A Fibritin; viral protein, attachment protein, bacteriophage assembly, chaperone, coiled coil, structural protein; 15.00A {Bacteriophage T4}
Probab=32.75 E-value=3.1e+02 Score=27.00 Aligned_cols=143 Identities=17% Similarity=0.157 Sum_probs=86.3
Q ss_pred hHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhc--hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 64 NTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRAS--EPVRAEVVQLRAEVQKLNSSRQELTTQI 141 (264)
Q Consensus 64 hvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~--e~lk~El~q~raE~q~L~~~RQeL~~qv 141 (264)
-|.+++.+......+.-+...+. ++++++-+++.-|-+. ..+=+-+.+-+.||-.|...--++..++
T Consensus 49 ~v~VQ~NV~~Ld~N~~~~~~~~n-----------e~~~~Vn~I~~~L~~~GD~~vi~qI~~n~~dI~~Lk~~~~~~~~~l 117 (487)
T 2bsg_A 49 TVSVLRNVEVLDKNIGILKTSLE-----------TANSDIKTIQGILDVSGDIEALAQIGINKKDISDLKTLTSEHTEIL 117 (487)
T ss_pred hhhhhhhHHHHhhhHHHHHhhHH-----------HHHHHHHHHHHHHhccccHHHHHHHHhhHHHHHHHhcchhhhhhhh
Confidence 34555555555555554443333 3334444444444332 1233667778888888888888888888
Q ss_pred HHHHHHHHHHHHhhhhhH--------HHHHHHHHHHHHHHH------------------HhhhhhhhhhhhHHHHHHHHH
Q 024699 142 KGLTKDVNRLEAENKQLI--------AMRADIDGIRSELVE------------------ARRAFEFEKKANEEQIEQKQA 195 (264)
Q Consensus 142 q~l~qeL~r~~ad~qqip--------al~aEie~lrqElqr------------------~Raa~EyEKk~~~e~~Eq~qa 195 (264)
..++.++..+..|+-..- -++.+|.-++.||=. +..-|+-=...-..+-....+
T Consensus 118 ~~~~~~~~ei~~diG~~~~~~d~~~rTV~~DI~~IK~elG~Y~g~DING~p~pgs~~tGmK~rV~~Nt~~i~~~~~RIt~ 197 (487)
T 2bsg_A 118 NGTNNTVDSILADIGPFNAEANSVYRTIRNDLLWIKRELGQYTGQDINGLPVVGNPSSGMKHRIINNTDVITSQGIRLSE 197 (487)
T ss_pred hhhccchHHHHhhcCccCcccCCCccccchhHHHHHHHhccCCCCCCCCCcCCCCCCcceehhhhhhHHHHHhcccHHHH
Confidence 888888888888876622 345666666666522 111122222233334445667
Q ss_pred HHHH-----HHHHHHHHHHHHHHHhhh
Q 024699 196 MENN-----LISMAREIEKLRAELLNT 217 (264)
Q Consensus 196 MEkn-----lismarEvEKLRaElana 217 (264)
+|++ +=++..||.+||+||=..
T Consensus 198 LE~~~~dSDVG~Lt~ev~~LR~ElG~~ 224 (487)
T 2bsg_A 198 LETKFIESDVGSLTIEVGNLREELGPK 224 (487)
T ss_pred HHHhcccCCchHHHHHHHHHHHHhCCC
Confidence 7776 457999999999998543
No 212
>3k8w_A Flagellin homolog; flagellum, structural protein, bacterial flagellu; 1.70A {Sphingomonas SP} PDB: 2zbi_A 3k8v_A
Probab=32.66 E-value=2.8e+02 Score=25.79 Aligned_cols=75 Identities=8% Similarity=0.129 Sum_probs=45.1
Q ss_pred HhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhHHHHHHHHHHHHHHHHH
Q 024699 101 DRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAE---NKQLIAMRADIDGIRSELVEA 175 (264)
Q Consensus 101 ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad---~qqipal~aEie~lrqElqr~ 175 (264)
-.+.+|..+++..+.+..-+..+.+=++.-...-++.+.-++.+..-+.++..+ -...-++..||+.|+.||.+.
T Consensus 29 aia~~L~sqi~~l~Q~~rN~~da~S~LqtAE~AL~~i~diLqrmRELaVQAaNgT~s~~DR~aIa~Ei~qL~~eI~~i 106 (326)
T 3k8w_A 29 AISDRMTAQIKGLTQAQRNANDGISLAQTAEGALGEISNNLQRIRELAVQASNGTNTQTDRDALQAEVTQLQSEIQRV 106 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777777766666666666666666666554444321 123345555666666655543
No 213
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=32.45 E-value=26 Score=21.53 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=11.8
Q ss_pred ccchHHHHHHHHhhHHHHHHH
Q 024699 61 IDDNTHLQRELTASKDEIHRL 81 (264)
Q Consensus 61 aathvaLrqeLaaaq~Elqrl 81 (264)
-....-|+||+++..-||-.|
T Consensus 6 kqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 6 KQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHh
Confidence 333445667776666665443
No 214
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=32.26 E-value=70 Score=22.85 Aligned_cols=28 Identities=11% Similarity=0.284 Sum_probs=23.7
Q ss_pred cccccchHHHHHHHHhhHHHHHHHhhhh
Q 024699 58 RHAIDDNTHLQRELTASKDEIHRLGQII 85 (264)
Q Consensus 58 qRLaathvaLrqeLaaaq~Elqrl~~~~ 85 (264)
..|++|--+|+.++...++|..+|....
T Consensus 6 KSlVDtVYaLkDqV~eL~qe~k~m~k~l 33 (56)
T 2w6b_A 6 KSLVDTVYALKDEVQELRQDNKKMKKSL 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888899999999999999997655
No 215
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=31.57 E-value=1.2e+02 Score=23.30 Aligned_cols=11 Identities=9% Similarity=0.096 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 024699 163 ADIDGIRSELV 173 (264)
Q Consensus 163 aEie~lrqElq 173 (264)
.|+|.+++-++
T Consensus 76 ~e~d~~k~k~~ 86 (90)
T 2wt7_B 76 RERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44455544443
No 216
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=31.11 E-value=83 Score=26.63 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhhhhh-------HHHHHHHHHHHHHHHHHhhhh
Q 024699 140 QIKGLTKDVNRLEAENKQL-------IAMRADIDGIRSELVEARRAF 179 (264)
Q Consensus 140 qvq~l~qeL~r~~ad~qqi-------pal~aEie~lrqElqr~Raa~ 179 (264)
.++.+.+.|.+++..++++ ..+++++|.++.|+-.++-+.
T Consensus 77 ~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~ 123 (158)
T 3tul_A 77 VYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEAL 123 (158)
T ss_dssp HHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666665 357788888888777666544
No 217
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=30.48 E-value=1.2e+02 Score=21.00 Aligned_cols=17 Identities=6% Similarity=0.339 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHhh
Q 024699 161 MRADIDGIRSELVEARR 177 (264)
Q Consensus 161 l~aEie~lrqElqr~Ra 177 (264)
|..+|..|+.|+..++.
T Consensus 41 L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 41 LASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555655555443
No 218
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=30.33 E-value=51 Score=31.10 Aligned_cols=20 Identities=25% Similarity=0.498 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024699 122 QLRAEVQKLNSSRQELTTQI 141 (264)
Q Consensus 122 q~raE~q~L~~~RQeL~~qv 141 (264)
++..+++.|.+.|..++.+|
T Consensus 41 ~~~~~~~~l~~~~n~~sk~i 60 (425)
T 2dq3_A 41 EIIKRLEALRSERNKLSKEI 60 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444
No 219
>2y39_A Nickel and cobalt resistance protein CNRR; metal binding protein; 1.41A {Cupriavidus metallidurans} PDB: 2y3b_A 2y3d_A 2y3g_A* 2y3h_A 3epv_A*
Probab=30.31 E-value=94 Score=25.09 Aligned_cols=44 Identities=7% Similarity=0.215 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024699 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQ 157 (264)
Q Consensus 114 e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qq 157 (264)
..+++++.++++++..+.......+-+|.....++...-+|+|.
T Consensus 41 ~~le~emRaan~~La~ai~~~~~~~p~V~aaid~~h~~mG~LQk 84 (118)
T 2y39_A 41 REIETRLRAANGKLADAIAKNPAWSPEVEAATQEVERAAGDLQR 84 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666665555555556666666666666666644
No 220
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=30.25 E-value=85 Score=25.07 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024699 188 EQIEQKQAMENNLISMAREIEKLRAELLNT 217 (264)
Q Consensus 188 e~~Eq~qaMEknlismarEvEKLRaElana 217 (264)
+..+..+.+...+-.+-+|+++|+.+++..
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555544
No 221
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=30.20 E-value=1.3e+02 Score=20.62 Aligned_cols=18 Identities=11% Similarity=0.468 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 024699 160 AMRADIDGIRSELVEARR 177 (264)
Q Consensus 160 al~aEie~lrqElqr~Ra 177 (264)
.|..+|..|+.|+..++.
T Consensus 40 ~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 40 QLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555543
No 222
>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} SCOP: e.32.1.1 PDB: 3a5x_A
Probab=30.07 E-value=2.9e+02 Score=26.47 Aligned_cols=79 Identities=8% Similarity=0.069 Sum_probs=58.9
Q ss_pred HHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHh
Q 024699 100 FDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN---KQLIAMRADIDGIRSELVEAR 176 (264)
Q Consensus 100 ~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~---qqipal~aEie~lrqElqr~R 176 (264)
+-.+.+|.++++..+....-+..+.+=+|.-...-++.+.-+|.+..-+.++..+. ...-++..|++.|+.||.+.=
T Consensus 47 ~aia~~l~~~i~~l~q~~~N~~~~~s~lqtae~aL~~i~~~Lqr~relavqaangt~s~~dr~ai~~Ei~~l~~ei~~ia 126 (494)
T 1ucu_A 47 QAIANRFTANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVS 126 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888888888887777777777777788888888776666554322 445678889999999998876
Q ss_pred hh
Q 024699 177 RA 178 (264)
Q Consensus 177 aa 178 (264)
..
T Consensus 127 n~ 128 (494)
T 1ucu_A 127 GQ 128 (494)
T ss_dssp HH
T ss_pred hh
Confidence 64
No 223
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=29.84 E-value=2.6e+02 Score=27.58 Aligned_cols=45 Identities=18% Similarity=0.313 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH-HHHHHHHHHHH
Q 024699 162 RADIDGIRSELVEARRAFEFEKKANEEQIEQKQA-MENNLISMARE 206 (264)
Q Consensus 162 ~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qa-MEknlismarE 206 (264)
.+|.+.|.+-....-..++-.++.+.|++.|++. ||+..-.+-+|
T Consensus 500 ~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e 545 (592)
T 1f5n_A 500 QASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKE 545 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443344444566777788888888766 66666555555
No 224
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=29.69 E-value=2.1e+02 Score=23.60 Aligned_cols=39 Identities=15% Similarity=0.224 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 024699 137 LTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEA 175 (264)
Q Consensus 137 L~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~ 175 (264)
|.++|+.+++.+..+.+.+.++|.=..|...+-+|+.+.
T Consensus 64 Lhaev~~v~~~F~~Ld~~L~~l~~~s~e~~~i~~EY~r~ 102 (140)
T 1xaw_A 64 LQSVLDEINKELSRLDKELDDYREESEEYMAAADEYNRL 102 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 444455555555555555555444344444555666664
No 225
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=29.38 E-value=55 Score=21.24 Aligned_cols=30 Identities=17% Similarity=0.144 Sum_probs=19.3
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHHHHHHH
Q 024699 168 IRSELVEARRAFEFEKKANEEQIEQKQAME 197 (264)
Q Consensus 168 lrqElqr~Raa~EyEKk~~~e~~Eq~qaME 197 (264)
||...+--.+.|+.-|+-|+-+-+|..++|
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~le 34 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRALX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHhcC
Confidence 555555666666777777777777776654
No 226
>1yhn_B RILP, RAB interacting lysosomal protein; protein transport; HET: GTP; 3.00A {Homo sapiens} SCOP: h.1.34.1
Probab=29.34 E-value=1.7e+02 Score=21.41 Aligned_cols=52 Identities=13% Similarity=0.329 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHhhhh
Q 024699 126 EVQKLNSSRQELTTQIKGLTKDVNRLEAEN---KQLIAMRADIDGIRSELVEARRAF 179 (264)
Q Consensus 126 E~q~L~~~RQeL~~qvq~l~qeL~r~~ad~---qqipal~aEie~lrqElqr~Raa~ 179 (264)
|++.....|.||.++|=.+..||+-.++++ -.+|.+- +|+|+--+..-|.-|
T Consensus 4 Elr~iLqERNELKa~vf~lqeEL~yY~~e~l~~~~~p~~l--l~a~k~aikkqr~~i 58 (65)
T 1yhn_B 4 EFEQILQERNELKAKVFLLKEELAYFQRELLTDHRVPSLL--LEAMKVAVRKQRKKI 58 (65)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTTCCCHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHH--HHHHHHHHHHHHHHH
Confidence 566778889999999999999999999876 3344443 456655555544443
No 227
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=28.85 E-value=1.8e+02 Score=27.45 Aligned_cols=35 Identities=17% Similarity=0.356 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 114 EPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDV 148 (264)
Q Consensus 114 e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL 148 (264)
+.|+.||..++..+.+|...-+++.++++.+.+.|
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l 40 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQL 40 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554444444444444444444
No 228
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=28.62 E-value=18 Score=28.27 Aligned_cols=34 Identities=18% Similarity=0.482 Sum_probs=19.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 024699 147 DVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (264)
Q Consensus 147 eL~r~~ad~qqipal~aEie~lrqElqr~Raa~E 180 (264)
|.+|----.-++.-|..||+.+..+|.-.|+.|+
T Consensus 54 EFAKWAKL~Rk~DKl~~ele~l~~~L~s~ks~fd 87 (94)
T 3vlc_E 54 NYAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQ 87 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTHHHHTTTTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433444555566666677777666666664
No 229
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=28.53 E-value=12 Score=27.31 Aligned_cols=30 Identities=13% Similarity=0.098 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q 024699 160 AMRADIDGIRSELVEARRAFEFEKKANEEQ 189 (264)
Q Consensus 160 al~aEie~lrqElqr~Raa~EyEKk~~~e~ 189 (264)
....||..|+.|+.+++..+++.||+..++
T Consensus 63 ~~~~ei~~L~~e~~~L~~e~~~Lkk~~~~~ 92 (97)
T 2jn6_A 63 SEAEQIRQLKKENALQRARTRHPAESCLEH 92 (97)
T ss_dssp HTHHHHHHHHHCGGGGGGTTSCCCGGGGTS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445789999999999999999999987654
No 230
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=28.08 E-value=2.1e+02 Score=22.26 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=8.2
Q ss_pred HHHHHHhhHHHHHHHhh
Q 024699 67 LQRELTASKDEIHRLGQ 83 (264)
Q Consensus 67 LrqeLaaaq~Elqrl~~ 83 (264)
|.+++..++.+|.+|..
T Consensus 3 ~~~~~e~lre~l~~le~ 19 (97)
T 2eqb_B 3 LGSNYNQLKEDYNTLKR 19 (97)
T ss_dssp --CCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHH
Confidence 44555555555555543
No 231
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=27.98 E-value=2e+02 Score=21.87 Aligned_cols=46 Identities=15% Similarity=0.245 Sum_probs=19.4
Q ss_pred HhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 101 DRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVN 149 (264)
Q Consensus 101 ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~ 149 (264)
+++-.+|++++. ......++..||..|..--|-|-.++..+...|.
T Consensus 23 drae~~e~~~k~---~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 23 DRAEQAEADKKA---AEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443332 2334444455555544444444444443333333
No 232
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=27.96 E-value=2.8e+02 Score=23.54 Aligned_cols=42 Identities=26% Similarity=0.325 Sum_probs=33.0
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 111 RASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLE 152 (264)
Q Consensus 111 ra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ 152 (264)
+..+.++.+...++.++..|...+++|...+..+.....+++
T Consensus 49 ~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~ 90 (174)
T 2p22_A 49 RFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQ 90 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344777888888888888999999999999888888555543
No 233
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=27.85 E-value=3.1e+02 Score=24.06 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024699 188 EQIEQKQAMENNLISMAREIEKLRAELL 215 (264)
Q Consensus 188 e~~Eq~qaMEknlismarEvEKLRaEla 215 (264)
.++-.-++.|+.|......|..|+....
T Consensus 154 ~LLkkh~~le~~l~~~~~~i~~L~~~a~ 181 (283)
T 3pe0_A 154 DLLQDAQDEKEQLNEYKGHLSGLAKRAK 181 (283)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567778888888888888876543
No 234
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=27.61 E-value=4.5e+02 Score=25.89 Aligned_cols=98 Identities=16% Similarity=0.257 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Q 024699 116 VRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQA 195 (264)
Q Consensus 116 lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qa 195 (264)
+-++|.+.+.|+-+...+-+++.+.-+.. |+-.++.+ .++++|.+.+++.-..+-+++|-+.+.+..-++.-+.
T Consensus 7 yq~~la~yq~elarvqkana~aka~Ye~~---~ae~~a~n---~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~ 80 (497)
T 3iox_A 7 YQAKLTAYQTELARVQKANADAKAAYEAA---VAANNAAN---AALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQK 80 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666544444443332222 22222222 3467788888888888888887776666555554433
Q ss_pred ----HHHHHHHHHHHHHHHHHHHhhhhh
Q 024699 196 ----MENNLISMAREIEKLRAELLNTER 219 (264)
Q Consensus 196 ----MEknlismarEvEKLRaElanae~ 219 (264)
-++.|...-.|..+.-++++..++
T Consensus 81 ~~AeY~~kl~aYe~~~~~~~k~lae~ek 108 (497)
T 3iox_A 81 DLADYPVKLKAYEDEQTSIKAALAELEK 108 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222333344444444455554433
No 235
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein, muscle, Z- LINE, actin-binding protein; 2.8A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Probab=27.21 E-value=3.5e+02 Score=24.41 Aligned_cols=34 Identities=15% Similarity=0.335 Sum_probs=26.7
Q ss_pred ccccchHHHHHHHHhhHHHHHHHhhhhhHhhhhh
Q 024699 59 HAIDDNTHLQRELTASKDEIHRLGQIIPKLRADK 92 (264)
Q Consensus 59 RLaathvaLrqeLaaaq~Elqrl~~~~~~l~ae~ 92 (264)
.|...|-+|..+|.+.+..++.+......+....
T Consensus 169 ~ll~kh~~~~~~l~~~~~~v~~l~~~~~~L~~~~ 202 (476)
T 1hci_A 169 ALLRKHEAFESDLAAHQDRVEQIAAIAQELNELD 202 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCc
Confidence 3446688899999998888998888888877654
No 236
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=26.97 E-value=1.7e+02 Score=20.70 Aligned_cols=12 Identities=17% Similarity=0.365 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 024699 162 RADIDGIRSELV 173 (264)
Q Consensus 162 ~aEie~lrqElq 173 (264)
+.-|+.|.-||+
T Consensus 62 rr~iq~L~~el~ 73 (77)
T 3trt_A 62 RRQVQSLTMEVD 73 (77)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333334443433
No 237
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=26.69 E-value=1.3e+02 Score=26.63 Aligned_cols=37 Identities=14% Similarity=0.333 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRL 151 (264)
Q Consensus 115 ~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~ 151 (264)
.+|+++.++...+++....++.+++++....+.++.+
T Consensus 175 ~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~ 211 (228)
T 3q0x_A 175 EVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQL 211 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666555555433
No 238
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=26.43 E-value=80 Score=29.18 Aligned_cols=29 Identities=10% Similarity=0.090 Sum_probs=10.4
Q ss_pred HHHhhhhhHHhhhhchhHHHHHHHHHHHHHHH
Q 024699 99 LFDRGLKLEVELRASEPVRAEVVQLRAEVQKL 130 (264)
Q Consensus 99 l~ek~~KmEAelra~e~lk~El~q~raE~q~L 130 (264)
++|.+.++|+ .+..+...+.+++..+..|
T Consensus 2 ~~~~~~~lE~---~Il~~~~~i~~L~~~l~~~ 30 (319)
T 1fzc_C 2 MLEEIMKYEA---SILTHDSSIRYLQEIYNSN 30 (319)
T ss_dssp --------CT---TTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HhhChHHHHHHHHHHHHHH
Confidence 5677778887 3344445555555444443
No 239
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}
Probab=26.22 E-value=4.9e+02 Score=26.54 Aligned_cols=99 Identities=15% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 66 HLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLT 145 (264)
Q Consensus 66 aLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~ 145 (264)
.||..+...+++|+.| .+++.+-+.+..++..+ ... +-=.....++++...+...+..|.-.|+++..+.+.+-
T Consensus 148 ~lr~~~q~~e~~ik~L----e~~Qe~f~~~y~~~~~~-~~~-~~~~~~~~~~~~~~~lq~~~~~l~~~R~~~~~k~~~~l 221 (683)
T 1yvl_A 148 NVKDKVMCIEHEIKSL----EDLQDEYDFKCKTLQNR-EHE-TNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKIIELL 221 (683)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTTC-C-------CHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhh-hhh-hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 024699 146 KDVNRLEAENKQLIAMRADIDGIRSELVEA 175 (264)
Q Consensus 146 qeL~r~~ad~qqipal~aEie~lrqElqr~ 175 (264)
..+..++.-+ |..||..-+..=|.+
T Consensus 222 ~~~~~lq~~l-----l~~eL~~WKrrQq~a 246 (683)
T 1yvl_A 222 NVTELTQNAL-----INDELVEWKRRQQSA 246 (683)
T ss_dssp HHHHHHHHHH-----HHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHHHHHhhHhh
No 240
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=25.64 E-value=5.1e+02 Score=25.82 Aligned_cols=68 Identities=15% Similarity=0.257 Sum_probs=46.2
Q ss_pred HhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Q 024699 108 VELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRA 178 (264)
Q Consensus 108 Aelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa 178 (264)
+++-..+-|++=+.-++.|+-.+.+..+.+.++|-..+-+.+.++- .+.++..|-+.++.-+--++.-
T Consensus 346 aevae~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d---~l~a~~kek~~~~n~~a~~~~K 413 (602)
T 1cii_A 346 AEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHAND---ALNALLKEKENIRNQLSGINQK 413 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhhhH
Confidence 4444566666778888888888888888888888888888665443 3444555555555555555555
No 241
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=25.59 E-value=2.3e+02 Score=21.79 Aligned_cols=42 Identities=12% Similarity=0.238 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Q 024699 135 QELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEAR 176 (264)
Q Consensus 135 QeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~R 176 (264)
+.|....+.+.+++..+....+++-....|++.....|..+-
T Consensus 4 ~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~ 45 (133)
T 1fxk_C 4 AEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQ 45 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445555555555555555555555555555555555554443
No 242
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=25.57 E-value=3.9e+02 Score=24.48 Aligned_cols=7 Identities=14% Similarity=0.164 Sum_probs=2.6
Q ss_pred hHHHHHH
Q 024699 186 NEEQIEQ 192 (264)
Q Consensus 186 ~~e~~Eq 192 (264)
+.+.+.|
T Consensus 472 ~~~~~~~ 478 (487)
T 3oja_A 472 LQELVVR 478 (487)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 243
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=25.36 E-value=1.5e+02 Score=24.14 Aligned_cols=44 Identities=7% Similarity=0.201 Sum_probs=31.4
Q ss_pred HHHHHHHHHHH--HHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Q 024699 139 TQIKGLTKDVN--RLEAENKQLIAMRADIDGIRSELVEARRAFEFE 182 (264)
Q Consensus 139 ~qvq~l~qeL~--r~~ad~qqipal~aEie~lrqElqr~Raa~EyE 182 (264)
.+++.+...|+ ..+.|.--|..+..|++.|..||.+++.--.|+
T Consensus 17 drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~~~ 62 (123)
T 2lf0_A 17 DRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQK 62 (123)
T ss_dssp HHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443 345577788899999999999999998765554
No 244
>2oee_A UPF0342 protein YHEA; MCSG, structural genomics, PSI-2, protein structure in midwest center for structural genomics, unknown function; HET: MSE; 1.96A {Bacillus subtilis} SCOP: a.281.1.2
Probab=25.22 E-value=1.5e+02 Score=22.34 Aligned_cols=31 Identities=32% Similarity=0.460 Sum_probs=22.4
Q ss_pred HHHHhhhhhHHhhhhchhHHHHHHHHHHHHHH
Q 024699 98 ELFDRGLKLEVELRASEPVRAEVVQLRAEVQK 129 (264)
Q Consensus 98 ~l~ek~~KmEAelra~e~lk~El~q~raE~q~ 129 (264)
.++|++-.|...|+.++.+ .++..+...++.
T Consensus 4 ~I~d~A~eL~~~I~~s~ey-~~~~~a~~~i~~ 34 (117)
T 2oee_A 4 NFYDVAYDLENALRGSEEF-TRLKNLYDEVNA 34 (117)
T ss_dssp CHHHHHHHHHHHHHTSHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHH-HHHHHHHHHHHc
Confidence 5788888888888888877 566666655544
No 245
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=25.10 E-value=1.8e+02 Score=23.41 Aligned_cols=36 Identities=14% Similarity=0.200 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 024699 144 LTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAF 179 (264)
Q Consensus 144 l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~ 179 (264)
|.+++...+..+..+|.++++++.|++++...-..+
T Consensus 3 L~~~~~~k~~~aa~L~~l~~ql~~l~~~l~~l~~~L 38 (147)
T 2rjz_A 3 LKQQFSTKAFQAANLEAYKAQMKEMEESFGALLRQL 38 (147)
T ss_dssp HHHHHHHTGGGCSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhC
Confidence 455666666667777777777777777665554444
No 246
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=24.84 E-value=2.3e+02 Score=26.64 Aligned_cols=29 Identities=21% Similarity=0.228 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 123 LRAEVQKLNSSRQELTTQIKGLTKDVNRL 151 (264)
Q Consensus 123 ~raE~q~L~~~RQeL~~qvq~l~qeL~r~ 151 (264)
+..|+..|.....+|..+++.+..++..+
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~ 36 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETC 36 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344443333333333333333333333
No 247
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=24.69 E-value=2e+02 Score=20.82 Aligned_cols=33 Identities=6% Similarity=0.157 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (264)
Q Consensus 115 ~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qe 147 (264)
+||.-+++++.|......--..+..++....+.
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~ 35 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEER 35 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555444444444444443333
No 248
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=24.53 E-value=2.2e+02 Score=21.13 Aligned_cols=21 Identities=19% Similarity=0.101 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 024699 159 IAMRADIDGIRSELVEARRAF 179 (264)
Q Consensus 159 pal~aEie~lrqElqr~Raa~ 179 (264)
-...++|..|+.||.+.|+.|
T Consensus 50 ~ekd~eI~~LqseLDKfrSVl 70 (72)
T 3nmd_A 50 DQKDELIQMLQNELDKYRSVI 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHhhccC
Confidence 344456666666666666654
No 249
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.37 E-value=3.1e+02 Score=22.87 Aligned_cols=134 Identities=22% Similarity=0.274 Sum_probs=75.0
Q ss_pred hHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 64 NTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKG 143 (264)
Q Consensus 64 hvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~ 143 (264)
...|-.+|.++.++|.....-|..+...++ +++.+ +.++ ..+..|+..+..++..=...|.+.......
T Consensus 15 qs~LeD~L~~~R~el~~~~~ri~~lE~~r~-~~~~l-------~~~~---~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ 83 (154)
T 2ocy_A 15 QSHLEEQLNKSLKTIASQKAAIENYNQLKE-DYNTL-------KREL---SDRDDEVKRLREDIAKENELRTKAEEEADK 83 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHH-HHHHH-------HTHH---HHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-------HHHH---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888888888888877777776665554 23322 2221 234556666666665555666666666666
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024699 144 LTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELLNT 217 (264)
Q Consensus 144 l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaElana 217 (264)
+.+||.-+.+-+ =.|-..|-.+=.+.|..+| +.+..+.+|.+.-+.-|-++-.++--|+.=+.++
T Consensus 84 ie~ElEeLTasL------FeEAN~MVa~ar~~~~~~e---~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m 148 (154)
T 2ocy_A 84 LNKEVEDLTASL------FDEANNMVADARKEKYAIE---ILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSL 148 (154)
T ss_dssp HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666554432 2344444444333343332 3455556666666666666666666555544433
No 250
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=24.11 E-value=94 Score=29.28 Aligned_cols=31 Identities=16% Similarity=0.328 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDV 148 (264)
Q Consensus 118 ~El~q~raE~q~L~~~RQeL~~qvq~l~qeL 148 (264)
+++..+-.+-+++...-++|.++...+++++
T Consensus 30 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i 60 (425)
T 2dq3_A 30 DKVLELDKRRREIIKRLEALRSERNKLSKEI 60 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433444334444443333333333
No 251
>3i9w_A Sensor protein TORS; stacked two four-helix bundles, ATP-binding, cell inner membrane, cell membrane, kinase, membrane; 2.70A {Escherichia coli k-12}
Probab=24.06 E-value=4e+02 Score=24.10 Aligned_cols=124 Identities=15% Similarity=0.101 Sum_probs=72.9
Q ss_pred HHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 024699 95 HTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVE 174 (264)
Q Consensus 95 q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr 174 (264)
..|.+.+-+..+=+-. ..|..+..|.+. ......|+.++..+..-++++.++.=.- .-|+.+..+++.
T Consensus 21 ~ARqlse~S~~i~~~a-------q~L~~v~~e~er-~~~gr~L~~~~~~l~~~i~~L~~~~~~~----~~l~~l~~~I~~ 88 (290)
T 3i9w_A 21 MARQLSEASAWELFAA-------QNLTSADNEKMW-QAQGRMLTAQSLKINALLQALREQGFDT----TAIEQQEQEISR 88 (290)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHCSSHHHH-HHHHHHHHHHHHHHHHHHHHHHTTTCCC----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHhcCCHHHH-HHHHHHHHHHHHHHHHHHHHHhccCCCH----HHHHHHHHHHHH
Confidence 3455555555444322 334444444443 3445568888888888888776432111 123333344443
Q ss_pred HhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhccccCCCCCCC
Q 024699 175 ARRAFEFEKKANEEQIEQKQAMENNLISMAREIE-KLRAELLNTERRACGLGGSAYG 230 (264)
Q Consensus 175 ~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvE-KLRaElanae~ra~~~~g~~Yg 230 (264)
.=+-..--=+.+..+-.|.+..-+.++.-+.+++ -.+++++|++..+.|.-.+.|.
T Consensus 89 ~L~~lg~~V~~RL~L~~~~~~~~~~l~~aa~~l~eL~~tqvaNa~t~~~A~ls~iYd 145 (290)
T 3i9w_A 89 SLRQQGELVGQRLQLRQQQQQLSQQIVAAADEIARLAQGQANNATTSAGATQAGIYD 145 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333333334566677788888888888899865 4599999999998332256666
No 252
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=24.02 E-value=4.5e+02 Score=24.63 Aligned_cols=71 Identities=13% Similarity=0.176 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh---------hhhHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 024699 115 PVRAEVVQLRAEVQKLNSSRQELTTQI-KGLTKDVNRLEAEN---------KQLIAMRADIDGIRSELVEARRAFEFEKK 184 (264)
Q Consensus 115 ~lk~El~q~raE~q~L~~~RQeL~~qv-q~l~qeL~r~~ad~---------qqipal~aEie~lrqElqr~Raa~EyEKk 184 (264)
.++.=...+..++..++.....++..+ ..+.+.|.....|. +.--.+..++..++++++..-..++--|+
T Consensus 78 tl~~aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~e~~~K~~~~~~kerK~~~~~~~k~qk~l~~~~~~l~KaKk 157 (486)
T 3haj_A 78 TVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKK 157 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCSSSSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666777788888888888888887 44677777776665 12233344445555544444444443333
Q ss_pred h
Q 024699 185 A 185 (264)
Q Consensus 185 ~ 185 (264)
.
T Consensus 158 ~ 158 (486)
T 3haj_A 158 A 158 (486)
T ss_dssp H
T ss_pred H
Confidence 3
No 253
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=23.99 E-value=57 Score=28.83 Aligned_cols=14 Identities=29% Similarity=0.238 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHHHH
Q 024699 115 PVRAEVVQLRAEVQ 128 (264)
Q Consensus 115 ~lk~El~q~raE~q 128 (264)
.++.++.|+..|.+
T Consensus 152 ~~~~~i~ql~~En~ 165 (250)
T 2ve7_C 152 SSADKMQQLNAAHQ 165 (250)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444433
No 254
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=23.93 E-value=2e+02 Score=20.59 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=23.1
Q ss_pred HHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 98 ELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQ 140 (264)
Q Consensus 98 ~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~q 140 (264)
+|..=+...|..|.+.+++-.++..+..-+++...+..++.+.
T Consensus 13 el~~WL~e~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~ 55 (118)
T 3uul_A 13 EVLTWLLSAEDTFQEQDDISDDVEDVKEQFATHETFMMELSAH 55 (118)
T ss_dssp HHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555556666665555555555554443
No 255
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=23.68 E-value=3.4e+02 Score=23.08 Aligned_cols=106 Identities=16% Similarity=0.203 Sum_probs=67.3
Q ss_pred hhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhh
Q 024699 102 RGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEF 181 (264)
Q Consensus 102 k~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~Ey 181 (264)
|++||..=||+..+ .+|+.+.-=++.++..-+.=+.++.....+|..++..+.-+..|-... ...- ....
T Consensus 34 kSa~L~eLirs~~P--eDL~~AN~LiK~m~~~d~~r~e~~~k~~~eLe~V~~nv~LL~EML~~~-------~pg~-~~~~ 103 (186)
T 1oxz_A 34 KSKMLARLLKSSHP--EDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSH-------SQGG-AAAG 103 (186)
T ss_dssp HHHHHHHHHSCCSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------SSSC-SCTT
T ss_pred HHHHHHHHhcCCCh--hhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCc-cCcc
Confidence 46666666777766 466666666677776666666667777777777777665554443221 1100 0111
Q ss_pred -hhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhh
Q 024699 182 -EKKANEEQIEQKQAMENNLISMAREI---EKLRAELLNT 217 (264)
Q Consensus 182 -EKk~~~e~~Eq~qaMEknlismarEv---EKLRaElana 217 (264)
+.....+++++.+.|-..+..|+.|. |.+=+||.++
T Consensus 104 ~d~Ell~eL~~~Ck~~qp~i~~Li~e~~ddee~L~elL~~ 143 (186)
T 1oxz_A 104 SSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQA 143 (186)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHh
Confidence 33477899999999999999999874 3455555544
No 256
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=23.66 E-value=89 Score=30.70 Aligned_cols=32 Identities=16% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 024699 142 KGLTKDVNRLEAENKQLIAMRADIDGIRSELV 173 (264)
Q Consensus 142 q~l~qeL~r~~ad~qqipal~aEie~lrqElq 173 (264)
..|..++.+++.+...+..-..|.+.+.+.|.
T Consensus 366 ~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~ 397 (575)
T 2i1j_A 366 LRLEEQLRQLQAAKEELEQRQNELQAMMQRLE 397 (575)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333333
No 257
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=23.63 E-value=2e+02 Score=21.42 Aligned_cols=44 Identities=32% Similarity=0.340 Sum_probs=30.2
Q ss_pred hHHHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhh
Q 024699 64 NTHLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELR 111 (264)
Q Consensus 64 hvaLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelr 111 (264)
.--|-..|-.-|.||-+|+..++++++--.- -.+=..|||.+++
T Consensus 5 NKeL~~kl~~Kq~EI~rLnvlvgslR~KLiK----YtelnKKLe~~~~ 48 (74)
T 2q6q_A 5 NKELNFKLREKQNEIFELKKIAETLRSKLEK----YVDITKKLEDQNL 48 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 3456677888899999999999999954332 2344556665543
No 258
>1io1_A Phase 1 flagellin; beta-folium, structural protein; 2.00A {Salmonella typhimurium} SCOP: e.32.1.1
Probab=23.41 E-value=3e+02 Score=25.67 Aligned_cols=73 Identities=8% Similarity=0.086 Sum_probs=45.3
Q ss_pred HhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHhhhhh
Q 024699 108 VELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAEN---KQLIAMRADIDGIRSELVEARRAFE 180 (264)
Q Consensus 108 Aelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~---qqipal~aEie~lrqElqr~Raa~E 180 (264)
++++..+....-+..+.+=+|--...-++.+.-+|.|.+-..++..+. ...-++..||+.|+.||.+.-...+
T Consensus 3 ~~i~~l~q~~~N~~~~~s~lqtae~aL~~i~~~Lqr~relavqaangt~s~~dr~ai~~Ei~~l~~ei~~ia~~t~ 78 (398)
T 1io1_A 3 ANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQ 78 (398)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHhhce
Confidence 444455555555555666666666666666677777766555554322 3456788899999999987644333
No 259
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=23.40 E-value=1.8e+02 Score=26.79 Aligned_cols=7 Identities=14% Similarity=-0.064 Sum_probs=2.8
Q ss_pred HhhhhhH
Q 024699 101 DRGLKLE 107 (264)
Q Consensus 101 ek~~KmE 107 (264)
.|+.+|.
T Consensus 5 ~~~~~~~ 11 (323)
T 1lwu_C 5 KTVQKIL 11 (323)
T ss_dssp CHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 260
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=23.19 E-value=2.9e+02 Score=22.03 Aligned_cols=26 Identities=12% Similarity=0.128 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 024699 193 KQAMENNLISMAREIEKLRAELLNTE 218 (264)
Q Consensus 193 ~qaMEknlismarEvEKLRaElanae 218 (264)
.+.|+.++=-..+-|+||+.+|.+.=
T Consensus 76 ~~~le~k~Kk~~~kV~Kl~~dl~~rI 101 (109)
T 2fcw_A 76 HALLEGRTKELGYTVKKHLQDLSGRI 101 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888889999999999998754
No 261
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=23.15 E-value=3.4e+02 Score=22.88 Aligned_cols=68 Identities=13% Similarity=0.140 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 024699 118 AEVVQLRAEVQKLNSSRQELTTQI-KGLTKDVNRLEAENKQ-LIAMRADIDGIRSELVEARRAFEFEKKA 185 (264)
Q Consensus 118 ~El~q~raE~q~L~~~RQeL~~qv-q~l~qeL~r~~ad~qq-ipal~aEie~lrqElqr~Raa~EyEKk~ 185 (264)
.=...+..++..++.....++..+ ..+.+.|.....+..+ .-.+..++..+.++++.....++--|+.
T Consensus 76 ~aw~~~~~~~e~~a~~h~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~ 145 (305)
T 2efl_A 76 KAFISNLNEMNDYAGQHEVISENMASQIIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRR 145 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555566666666666555 4455555555444432 1223344444444444444444433333
No 262
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=23.06 E-value=3.5e+02 Score=27.64 Aligned_cols=48 Identities=15% Similarity=0.374 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 024699 118 AEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADI 165 (264)
Q Consensus 118 ~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEi 165 (264)
.+|...-.-|+.+...|.+|+.++|..++.......+..+...+-++|
T Consensus 10 ~dl~~i~~~i~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 57 (706)
T 3fhn_A 10 DDLLNINDRIKQVQNERNELASKLQNLKQSLASNDTEVALSEVIAQDI 57 (706)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCCCHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence 456777888999999999999999999986655555555555444444
No 263
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=23.02 E-value=1e+02 Score=19.73 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=17.8
Q ss_pred HHHHHHHHhhHHHHHHHhhhhhHhh
Q 024699 65 THLQRELTASKDEIHRLGQIIPKLR 89 (264)
Q Consensus 65 vaLrqeLaaaq~Elqrl~~~~~~l~ 89 (264)
.+++.|-++...|+|.+..-|..++
T Consensus 5 aaikeeqaaieeeiqaikeeiaaik 29 (36)
T 1bb1_B 5 AAIKEEQAAIEEEIQAIKEEIAAIK 29 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777778777776666654
No 264
>1fzc_A Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: h.1.8.1 PDB: 1fzb_A* 1fza_A* 1fze_A* 1fzf_A* 1fzg_A* 1n86_A* 2h43_A* 2hlo_A* 2hod_A* 2hpc_A* 2q9i_A* 2xnx_A 2xny_A 2z4e_A* 3e1i_A* 1n8e_A 2oyh_A* 1ltj_A* 1lt9_A* 1re4_A* ...
Probab=22.92 E-value=1.4e+02 Score=22.97 Aligned_cols=42 Identities=17% Similarity=0.310 Sum_probs=33.9
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024699 174 EARRAFEFEKKANEEQIEQKQAMENNLISMAREIEKLRAELL 215 (264)
Q Consensus 174 r~Raa~EyEKk~~~e~~Eq~qaMEknlismarEvEKLRaEla 215 (264)
-+|.-|++-|..-.+++.+.+++.+|...=..|+-.|.-+|-
T Consensus 4 dLrrrI~~LkrkV~~q~~~i~~Lq~nvr~Q~vemkRLEVDID 45 (87)
T 1fzc_A 4 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDID 45 (87)
T ss_dssp -----CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 368889999999999999999999999998888888887764
No 265
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=22.89 E-value=2.1e+02 Score=20.40 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=15.9
Q ss_pred HhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 101 DRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELT 138 (264)
Q Consensus 101 ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~ 138 (264)
.=+..+|..|.+.+++-.++..+..-+++...+..++.
T Consensus 16 ~WL~~~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~ 53 (119)
T 3uun_A 16 SWLLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLT 53 (119)
T ss_dssp HHHHHHHHHHHHHCSCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444333333
No 266
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=22.88 E-value=1.7e+02 Score=20.67 Aligned_cols=38 Identities=26% Similarity=0.282 Sum_probs=20.1
Q ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 111 RASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDV 148 (264)
Q Consensus 111 ra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL 148 (264)
|+..-=++-+..+...+..|.....+|..++..|++.|
T Consensus 23 rsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 23 RSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344555555666666655555655555555544
No 267
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=22.69 E-value=90 Score=27.55 Aligned_cols=14 Identities=14% Similarity=0.128 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHhhh
Q 024699 204 AREIEKLRAELLNT 217 (264)
Q Consensus 204 arEvEKLRaElana 217 (264)
++-+.+|.+.+.+-
T Consensus 189 ~k~~~qly~~vt~i 202 (250)
T 2ve7_C 189 AVYVAQLYHQVSKI 202 (250)
T ss_dssp THHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhhc
Confidence 44455565555543
No 268
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=22.39 E-value=5.2e+02 Score=24.71 Aligned_cols=33 Identities=15% Similarity=0.276 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKD 147 (264)
Q Consensus 115 ~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qe 147 (264)
.|+.+|+.+.-.++.+...-.+-..-|..|..-
T Consensus 35 ~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~ 67 (411)
T 3ghg_C 35 KVDKDLQSLEDILHQVENKTSEVKQLIKAIQLT 67 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 566677766666666655544444444444433
No 269
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=22.36 E-value=2.6e+02 Score=21.27 Aligned_cols=34 Identities=18% Similarity=0.069 Sum_probs=20.5
Q ss_pred hHHHHHHHHHhhhhhHHh-hhhchhHHHHHHHHHH
Q 024699 92 KEAHTRELFDRGLKLEVE-LRASEPVRAEVVQLRA 125 (264)
Q Consensus 92 ~e~q~R~l~ek~~KmEAe-lra~e~lk~El~q~ra 125 (264)
+|+.|++=+++..|-=.+ =+..+.+..||--+..
T Consensus 36 KElKiKeGaENL~katt~~kk~~~~V~~eL~~sn~ 70 (86)
T 1cxz_B 36 KELKLKEGAENLRRATTDLGRSLGPVELLLRGSSR 70 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHhHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 677888888877776665 4444444444443333
No 270
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=22.35 E-value=2.7e+02 Score=21.51 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhhhhhhh-------hhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Q 024699 165 IDGIRSELVEARRAFEFE-------KKANEEQIEQKQAMENNLISMARE-IEKLRAELL 215 (264)
Q Consensus 165 ie~lrqElqr~Raa~EyE-------Kk~~~e~~Eq~qaMEknlismarE-vEKLRaEla 215 (264)
+|.|+.|.-.+++.|+-- .+.+.+.++....+=|+++.-+.| |..|+.-|.
T Consensus 22 ~d~Lq~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e~a~e~vp~L~~~i~ 80 (94)
T 3fx7_A 22 KELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIR 80 (94)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHH
Confidence 355666666677766544 456888888888888888887777 777777664
No 271
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=22.27 E-value=1.9e+02 Score=23.63 Aligned_cols=81 Identities=16% Similarity=0.270 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH-----------HHHHHHHHHHHHHHHH
Q 024699 141 IKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFEFEKKANEEQIEQK-----------QAMENNLISMAREIEK 209 (264)
Q Consensus 141 vq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~EyEKk~~~e~~Eq~-----------qaMEknlismarEvEK 209 (264)
++.+-.||.++..-++..-.--.|...--.|..|+|..+|.---..-+-++++ ..-+.++.-++|=+--
T Consensus 5 i~llEeeLer~eerl~~a~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~ 84 (147)
T 2b9c_A 5 IQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVI 84 (147)
T ss_dssp ------CCGGGGTTTTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34444444444444444333344444555555555555544443333333332 1223334444444445
Q ss_pred HHHHHhhhhhcc
Q 024699 210 LRAELLNTERRA 221 (264)
Q Consensus 210 LRaElanae~ra 221 (264)
+-.+|..++.|+
T Consensus 85 ~E~dLeraeeRa 96 (147)
T 2b9c_A 85 IESDLERAEERA 96 (147)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555554
No 272
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=21.79 E-value=3.5e+02 Score=22.47 Aligned_cols=107 Identities=16% Similarity=0.210 Sum_probs=72.0
Q ss_pred HhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 024699 101 DRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEARRAFE 180 (264)
Q Consensus 101 ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~Raa~E 180 (264)
+|++||..=||+..| .+|+.|.-=++.++..-+.=+.++.....+|..++..+.-+..|-... ...- ...
T Consensus 17 eks~~L~~Lirs~~P--eDL~~AN~LiK~m~~~d~~r~e~~~k~~seLe~V~~nv~LL~EML~~~-------~pg~-~~~ 86 (158)
T 1naf_A 17 EKSKMLARLLKSSHP--EDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSH-------SQGG-AAA 86 (158)
T ss_dssp HHHHHHHHHHSSCST--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TTC-----
T ss_pred HHHHHHHHHHhcCCh--hhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCc-CCC
Confidence 578888888888877 477777777777777766667777777778887777765555543322 1100 011
Q ss_pred h-hhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhh
Q 024699 181 F-EKKANEEQIEQKQAMENNLISMAREI---EKLRAELLNT 217 (264)
Q Consensus 181 y-EKk~~~e~~Eq~qaMEknlismarEv---EKLRaElana 217 (264)
. +.....+++++.+.|-..+..|+.|. |.+=+||.++
T Consensus 87 ~~d~Ell~eL~~~Ck~~qp~i~~Li~e~~ddee~L~elL~~ 127 (158)
T 1naf_A 87 GSSEDLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQA 127 (158)
T ss_dssp -CCTTHHHHHHHHHHTHHHHHHHHHHHCCSCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHh
Confidence 1 33477899999999999999999874 4455665544
No 273
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=21.64 E-value=3.7e+02 Score=25.20 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024699 190 IEQKQAMENNLISMAREIEKLRAELL 215 (264)
Q Consensus 190 ~Eq~qaMEknlismarEvEKLRaEla 215 (264)
.++++.+.+.+-.+-.++.++.+++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (421)
T 1ses_A 70 IARGKALGEEAKRLEEALREKEARLE 95 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 274
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=21.52 E-value=3e+02 Score=21.70 Aligned_cols=34 Identities=9% Similarity=0.294 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 115 PVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDV 148 (264)
Q Consensus 115 ~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL 148 (264)
.+...+..+..++..|...++.|...+....+.+
T Consensus 85 ~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~ 118 (142)
T 3gp4_A 85 LLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHL 118 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555544433
No 275
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=21.14 E-value=2.7e+02 Score=20.91 Aligned_cols=28 Identities=14% Similarity=0.120 Sum_probs=12.0
Q ss_pred HHHHhhhhhHHhhhhchhHHHHHHHHHH
Q 024699 98 ELFDRGLKLEVELRASEPVRAEVVQLRA 125 (264)
Q Consensus 98 ~l~ek~~KmEAelra~e~lk~El~q~ra 125 (264)
++++.+..+..+|......-.+|..+|.
T Consensus 9 ~F~~~v~~I~~~i~~i~~~v~~l~~~~~ 36 (127)
T 1ez3_A 9 EFFEQVEEIRGFIDKIAENVEEVKRKHS 36 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444
No 276
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=21.08 E-value=6.3e+02 Score=25.23 Aligned_cols=82 Identities=18% Similarity=0.238 Sum_probs=43.9
Q ss_pred HHHHHHHhhHHHHHHHhhhhhHhhhhhHHHHHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024699 66 HLQRELTASKDEIHRLGQIIPKLRADKEAHTRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLT 145 (264)
Q Consensus 66 aLrqeLaaaq~Elqrl~~~~~~l~ae~e~q~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~ 145 (264)
.||.-.....++|+.| .+++.+=+.+..++..+ .. +.--.....++++..++...+..|.-.|+++..+.+.+-
T Consensus 13 ~l~~~~q~~e~~~k~L----e~~Qe~f~~~y~~~~~~-~~-~~~~~~~~~~~~~~~~l~~~~~~l~~~R~~~~~~~~~~~ 86 (575)
T 1bf5_A 13 NVKDKVMCIEHEIKSL----EDLQDEYDFKCKTLQNR-EH-ETNGVAKSDQKQEQLLLKKMYLMLDNKRKEVVHKIIELL 86 (575)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHT-TC---------------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHhh-hh-hhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666665 45555556666666522 11 100012245677777888889999999999988777755
Q ss_pred HHHHHHHH
Q 024699 146 KDVNRLEA 153 (264)
Q Consensus 146 qeL~r~~a 153 (264)
..+..++.
T Consensus 87 ~~~~~lq~ 94 (575)
T 1bf5_A 87 NVTELTQN 94 (575)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55444433
No 277
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=21.04 E-value=1.1e+02 Score=24.63 Aligned_cols=22 Identities=14% Similarity=0.119 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024699 126 EVQKLNSSRQELTTQIKGLTKD 147 (264)
Q Consensus 126 E~q~L~~~RQeL~~qvq~l~qe 147 (264)
=|+|=..+.|+....+....++
T Consensus 44 LI~KWr~asq~aaeeLf~~~~~ 65 (122)
T 3viq_A 44 LIQKWKNAAQQAAEVLFKPMAE 65 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777888877777765554
No 278
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=21.03 E-value=5.2e+02 Score=25.08 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=17.5
Q ss_pred chhhHHHHHHHHHHhhhh--cccccccccchHHHHHHHHhhHHHHHHH
Q 024699 36 PMTLEEEIEIQRREMHRI--ISENRHAIDDNTHLQRELTASKDEIHRL 81 (264)
Q Consensus 36 P~~LEe~l~~Q~~EiqrL--l~dNqRLaathvaLrqeLaaaq~Elqrl 81 (264)
...||+.|-.-...|+.+ +.. -+...+|..||+.+..--+||-..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~e~~~~ 67 (526)
T 2de0_X 21 VRVLEEQLVKAKEQIENYKKQTR-NGLGKDHEILRRRIENGAKELWFF 67 (526)
T ss_dssp --------------------------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHhhhhhhhhHHhcccC-CCCChHHHHHHHHHHHhHHHHHHH
Confidence 356888775555555433 222 456779999999988877777544
No 279
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=20.36 E-value=1.8e+02 Score=21.23 Aligned_cols=19 Identities=11% Similarity=0.357 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 024699 162 RADIDGIRSELVEARRAFE 180 (264)
Q Consensus 162 ~aEie~lrqElqr~Raa~E 180 (264)
.+||..|+.+|.+.++.|.
T Consensus 38 d~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 38 EEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 4778888888888888775
No 280
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=20.30 E-value=22 Score=33.56 Aligned_cols=73 Identities=21% Similarity=0.366 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 024699 96 TRELFDRGLKLEVELRASEPVRAEVVQLRAEVQKLNSSRQELTTQIKGLTKDVNRLEAENKQLIAMRADIDGIRSELVEA 175 (264)
Q Consensus 96 ~R~l~ek~~KmEAelra~e~lk~El~q~raE~q~L~~~RQeL~~qvq~l~qeL~r~~ad~qqipal~aEie~lrqElqr~ 175 (264)
-++...+..+||++++..= .++|+.+-++|...-++|..+...+.++|.... .+|+..+.+|..-
T Consensus 324 ~~~~~~~~~~~e~~~~~~f-----~~~v~~~~~~~~~~e~~l~~~~~~~~~~l~~~~----------~~l~~~~~~~~~~ 388 (418)
T 2qag_C 324 RREHVAKMKKMEMEMEQVF-----EMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQH----------KELEEKRRQFEDE 388 (418)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 3445666777777665431 145666667777777777777777777766433 3445555555555
Q ss_pred hhhhhhhh
Q 024699 176 RRAFEFEK 183 (264)
Q Consensus 176 Raa~EyEK 183 (264)
.++|+.++
T Consensus 389 ~~~~~~~~ 396 (418)
T 2qag_C 389 KANWEAQQ 396 (418)
T ss_dssp --------
T ss_pred HHHHHHHh
Confidence 55555444
Done!