BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024703
(264 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1DH3|A Chain A, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
Basis For Creb Faimly Selective Dimerization And Dna
Binding
pdb|1DH3|C Chain C, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
Basis For Creb Faimly Selective Dimerization And Dna
Binding
Length = 55
Score = 35.0 bits (79), Expect = 0.040, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKL 178
K+ R ++NR+AA SR +KK YVK LE + LE++ + L
Sbjct: 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTL 41
>pdb|1FOS|E Chain E, Two Human C-Fos:c-Jun:dna Complexes
pdb|1FOS|G Chain G, Two Human C-Fos:c-Jun:dna Complexes
Length = 62
Score = 32.7 bits (73), Expect = 0.21, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196
K+R R+ RN+ AA +SR R++ L+ ++ LE E L + +L E + L F L
Sbjct: 1 KRRIRRERNKMAAAKSRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 59
>pdb|1T2K|D Chain D, Structure Of The Dna Binding Domains Of Irf3, Atf-2 And
Jun Bound To Dna
Length = 61
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Query: 139 KRRRQL-RNRDAAVRSRERKKMYVKDLEMKSRYLES 173
KRR+ L RNR AA RSR+++K++V+ LE K+ L S
Sbjct: 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSS 36
>pdb|1JNM|A Chain A, Crystal Structure Of The JunCRE COMPLEX
pdb|1JNM|B Chain B, Crystal Structure Of The JunCRE COMPLEX
pdb|2H7H|A Chain A, Crystal Structure Of The Jun Bzip Homodimer Complexed With
Ap-1 Dna
pdb|2H7H|B Chain B, Crystal Structure Of The Jun Bzip Homodimer Complexed With
Ap-1 Dna
pdb|1FOS|F Chain F, Two Human C-Fos:c-Jun:dna Complexes
pdb|1FOS|H Chain H, Two Human C-Fos:c-Jun:dna Complexes
Length = 62
Score = 31.6 bits (70), Expect = 0.52, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLG 179
K R+++RNR AA +SR+RK + LE K + L+++ +L
Sbjct: 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELA 42
>pdb|2WT7|A Chain A, Crystal Structure Of The Bzip Heterodimeric Complex
Mafb:cfos Bound To Dna
Length = 63
Score = 31.2 bits (69), Expect = 0.55, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196
K+R R+ RN+ AA + R R++ L+ ++ LE E L + +L E + L F L
Sbjct: 2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60
>pdb|1T2K|C Chain C, Structure Of The Dna Binding Domains Of Irf3, Atf-2 And
Jun Bound To Dna
Length = 62
Score = 31.2 bits (69), Expect = 0.59, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLG 179
K R+++RNR AA +SR+RK + LE K + L+++ +L
Sbjct: 2 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELA 43
>pdb|1A02|J Chain J, Structure Of The Dna Binding Domains Of Nfat, Fos And Jun
Bound To Dna
Length = 56
Score = 31.2 bits (69), Expect = 0.62, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLG 179
K R+++RNR AA +SR+RK + LE K + L+++ +L
Sbjct: 2 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELA 43
>pdb|1A02|F Chain F, Structure Of The Dna Binding Domains Of Nfat, Fos And Jun
Bound To Dna
Length = 56
Score = 29.6 bits (65), Expect = 2.0, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSL 192
K+R R+ RN+ AA +SR R++ L+ ++ LE E L + +L E + L
Sbjct: 2 KRRIRRERNKMAAAKSRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKL 56
>pdb|1S9K|E Chain E, Crystal Structure Of Human Nfat1 And Fos-Jun On The Il-2
Arre1 Site
Length = 52
Score = 28.5 bits (62), Expect = 3.8, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 25/39 (64%)
Query: 141 RRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLG 179
R+++RNR AA + R+RK + LE K + L+++ +L
Sbjct: 1 RKRMRNRIAASKCRKRKLERIARLEEKVKTLKAQNSELA 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,438,566
Number of Sequences: 62578
Number of extensions: 283440
Number of successful extensions: 509
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 494
Number of HSP's gapped (non-prelim): 18
length of query: 264
length of database: 14,973,337
effective HSP length: 97
effective length of query: 167
effective length of database: 8,903,271
effective search space: 1486846257
effective search space used: 1486846257
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)