Query 024703
Match_columns 264
No_of_seqs 161 out of 913
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 06:43:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024703.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024703hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00338 BRLZ basic region l 99.5 7.1E-14 1.5E-18 102.3 9.7 63 135-197 2-64 (65)
2 PF00170 bZIP_1: bZIP transcri 99.4 1.2E-12 2.7E-17 95.7 9.3 62 135-196 2-63 (64)
3 KOG3584 cAMP response element 99.3 8.9E-12 1.9E-16 116.8 6.7 55 131-185 284-338 (348)
4 KOG0709 CREB/ATF family transc 99.2 9.4E-12 2E-16 121.9 5.7 69 133-201 246-314 (472)
5 KOG4343 bZIP transcription fac 99.2 6.5E-11 1.4E-15 118.0 10.5 67 126-199 269-335 (655)
6 PF07716 bZIP_2: Basic region 99.2 1.7E-10 3.7E-15 82.4 8.8 52 136-188 3-54 (54)
7 KOG4005 Transcription factor X 98.9 6.2E-09 1.4E-13 95.9 9.4 70 128-197 59-135 (292)
8 KOG0837 Transcriptional activa 98.6 2.1E-07 4.6E-12 86.4 8.5 74 130-203 197-271 (279)
9 KOG4571 Activating transcripti 98.2 7.1E-06 1.5E-10 77.2 9.7 62 137-198 226-287 (294)
10 PF03131 bZIP_Maf: bZIP Maf tr 98.1 3.5E-08 7.6E-13 77.3 -7.3 60 136-195 28-87 (92)
11 KOG3119 Basic region leucine z 98.0 5E-05 1.1E-09 70.1 9.6 67 135-201 191-257 (269)
12 KOG4196 bZIP transcription fac 97.7 0.00037 7.9E-09 59.4 9.3 69 136-204 51-119 (135)
13 KOG3863 bZIP transcription fac 96.8 0.0015 3.4E-08 66.8 5.4 58 141-198 493-550 (604)
14 KOG1414 Transcriptional activa 96.6 9.1E-05 2E-09 71.5 -5.0 77 129-205 145-225 (395)
15 KOG1414 Transcriptional activa 96.5 0.00051 1.1E-08 66.4 -1.0 78 131-209 278-356 (395)
16 PF06156 DUF972: Protein of un 91.8 0.5 1.1E-05 38.8 5.8 42 160-201 9-57 (107)
17 PRK13169 DNA replication intia 90.7 0.73 1.6E-05 38.2 5.9 40 160-199 9-55 (110)
18 PRK10884 SH3 domain-containing 89.4 3.3 7.2E-05 37.4 9.5 41 158-198 124-164 (206)
19 PF08172 CASP_C: CASP C termin 88.6 1.7 3.7E-05 40.2 7.2 42 155-196 89-130 (248)
20 PRK13922 rod shape-determining 87.8 4.3 9.3E-05 36.9 9.2 43 157-199 67-112 (276)
21 PF06156 DUF972: Protein of un 87.2 2.5 5.5E-05 34.7 6.6 35 160-194 23-57 (107)
22 PF08232 Striatin: Striatin fa 87.1 7.4 0.00016 32.8 9.6 59 141-199 14-72 (134)
23 PF06005 DUF904: Protein of un 87.0 2.4 5.2E-05 32.6 6.0 36 160-195 19-54 (72)
24 PRK00295 hypothetical protein; 86.8 3 6.5E-05 31.5 6.4 41 159-199 5-52 (68)
25 PF04102 SlyX: SlyX; InterPro 86.6 3.7 8E-05 30.8 6.8 41 159-199 4-51 (69)
26 PRK04325 hypothetical protein; 85.9 3.5 7.5E-05 31.6 6.4 41 159-199 9-56 (74)
27 PRK13169 DNA replication intia 85.6 4 8.6E-05 33.9 7.1 28 158-185 28-55 (110)
28 PF15058 Speriolin_N: Sperioli 85.6 2 4.3E-05 39.2 5.7 37 162-199 8-44 (200)
29 PRK00736 hypothetical protein; 85.6 3.8 8.1E-05 31.0 6.4 42 159-200 5-53 (68)
30 PRK02119 hypothetical protein; 85.6 3.7 7.9E-05 31.5 6.4 43 158-200 8-57 (73)
31 PRK02793 phi X174 lysis protei 85.5 3.7 8.1E-05 31.3 6.4 42 159-200 8-56 (72)
32 PRK04406 hypothetical protein; 85.5 3.6 7.9E-05 31.8 6.4 42 159-200 11-59 (75)
33 PF10473 CENP-F_leu_zip: Leuci 85.5 11 0.00024 32.5 9.9 62 138-199 31-92 (140)
34 PF12808 Mto2_bdg: Micro-tubul 84.2 3 6.5E-05 30.6 5.1 43 157-199 2-48 (52)
35 PF02183 HALZ: Homeobox associ 84.2 3.1 6.7E-05 29.4 5.0 37 163-199 2-38 (45)
36 TIGR02449 conserved hypothetic 83.9 5 0.00011 30.6 6.4 38 161-198 9-46 (65)
37 PF10226 DUF2216: Uncharacteri 83.9 8.8 0.00019 35.0 9.0 58 136-196 21-78 (195)
38 TIGR00219 mreC rod shape-deter 83.5 3.1 6.8E-05 38.9 6.3 38 162-199 69-110 (283)
39 PF09726 Macoilin: Transmembra 82.1 5.7 0.00012 41.9 8.1 33 162-194 548-580 (697)
40 PF01166 TSC22: TSC-22/dip/bun 81.8 3.6 7.9E-05 31.0 4.8 30 167-196 15-44 (59)
41 COG4467 Regulator of replicati 80.8 4.1 9E-05 34.2 5.3 34 160-193 9-42 (114)
42 COG3074 Uncharacterized protei 80.2 6.4 0.00014 31.0 5.9 37 159-195 25-61 (79)
43 PF05812 Herpes_BLRF2: Herpesv 79.3 3.2 7E-05 35.1 4.3 27 175-201 5-31 (118)
44 PRK00846 hypothetical protein; 78.8 9.2 0.0002 30.0 6.4 44 157-200 11-61 (77)
45 KOG4005 Transcription factor X 78.6 25 0.00053 33.6 10.2 72 125-196 59-148 (292)
46 PF06005 DUF904: Protein of un 78.5 9.7 0.00021 29.3 6.4 37 161-197 6-49 (72)
47 KOG4343 bZIP transcription fac 78.1 5.8 0.00013 41.3 6.5 63 133-195 280-345 (655)
48 PF09744 Jnk-SapK_ap_N: JNK_SA 77.9 23 0.0005 31.0 9.3 31 169-199 85-115 (158)
49 PF13851 GAS: Growth-arrest sp 77.8 29 0.00062 31.0 10.1 59 138-196 72-130 (201)
50 COG4467 Regulator of replicati 77.6 6.3 0.00014 33.2 5.4 40 159-198 15-54 (114)
51 PF08826 DMPK_coil: DMPK coile 77.4 28 0.00061 26.2 8.5 38 157-194 23-60 (61)
52 KOG4797 Transcriptional regula 77.3 6 0.00013 33.5 5.3 27 167-193 68-94 (123)
53 KOG3119 Basic region leucine z 77.2 13 0.00028 34.6 8.1 45 143-187 206-250 (269)
54 TIGR02449 conserved hypothetic 76.7 6.7 0.00014 30.0 5.0 29 170-198 4-32 (65)
55 TIGR02894 DNA_bind_RsfA transc 76.2 12 0.00025 33.3 7.0 39 158-196 110-148 (161)
56 PF04977 DivIC: Septum formati 75.6 9 0.0002 27.9 5.4 29 157-185 22-50 (80)
57 PF11932 DUF3450: Protein of u 74.5 34 0.00074 30.9 9.9 46 154-199 51-96 (251)
58 PF06216 RTBV_P46: Rice tungro 74.1 11 0.00025 36.2 6.9 40 159-198 64-103 (389)
59 PF05377 FlaC_arch: Flagella a 73.5 12 0.00026 27.9 5.4 37 161-197 2-38 (55)
60 PRK14127 cell division protein 72.9 18 0.00038 30.1 7.0 41 159-199 30-70 (109)
61 KOG1962 B-cell receptor-associ 72.8 11 0.00023 34.9 6.2 46 155-200 168-213 (216)
62 PRK15422 septal ring assembly 72.8 15 0.00032 29.2 6.2 29 168-196 27-62 (79)
63 PF03980 Nnf1: Nnf1 ; InterPr 71.1 7.4 0.00016 30.9 4.3 31 157-187 78-108 (109)
64 PF14915 CCDC144C: CCDC144C pr 70.9 21 0.00046 34.5 8.0 35 167-201 208-242 (305)
65 PRK00888 ftsB cell division pr 70.9 10 0.00022 30.7 5.1 33 155-187 30-62 (105)
66 PRK10884 SH3 domain-containing 70.8 23 0.00051 32.0 7.8 41 157-197 130-170 (206)
67 KOG3335 Predicted coiled-coil 70.7 9.7 0.00021 34.4 5.3 43 138-186 91-133 (181)
68 COG1382 GimC Prefoldin, chaper 70.4 23 0.0005 30.0 7.2 63 129-199 48-110 (119)
69 PF10186 Atg14: UV radiation r 70.4 54 0.0012 29.1 10.0 10 251-260 218-227 (302)
70 PRK13729 conjugal transfer pil 70.4 32 0.0007 35.2 9.5 36 162-197 79-121 (475)
71 PF04977 DivIC: Septum formati 69.7 18 0.00038 26.3 5.8 33 167-199 18-50 (80)
72 PF13815 Dzip-like_N: Iguana/D 69.5 24 0.00053 28.7 7.1 42 155-196 76-117 (118)
73 PF15556 Zwint: ZW10 interacto 69.5 51 0.0011 30.9 9.8 11 65-75 30-40 (252)
74 PF07558 Shugoshin_N: Shugoshi 68.9 6 0.00013 27.9 2.9 30 167-196 15-44 (46)
75 PF08614 ATG16: Autophagy prot 68.9 79 0.0017 27.6 10.6 28 171-198 156-183 (194)
76 PRK10803 tol-pal system protei 68.7 44 0.00095 30.9 9.3 42 156-197 58-99 (263)
77 PF03670 UPF0184: Uncharacteri 68.5 21 0.00045 28.6 6.2 41 159-199 33-73 (83)
78 COG2433 Uncharacterized conser 68.4 15 0.00032 38.7 6.8 17 182-198 476-492 (652)
79 TIGR02209 ftsL_broad cell divi 68.0 25 0.00054 26.3 6.4 28 159-186 31-58 (85)
80 PF01166 TSC22: TSC-22/dip/bun 67.6 9.8 0.00021 28.8 4.0 24 158-181 20-43 (59)
81 PF05266 DUF724: Protein of un 67.3 30 0.00066 30.9 7.7 20 149-168 100-119 (190)
82 PRK00888 ftsB cell division pr 67.0 24 0.00051 28.7 6.4 30 163-192 31-60 (105)
83 PF05377 FlaC_arch: Flagella a 66.7 12 0.00026 27.8 4.3 32 168-199 2-33 (55)
84 TIGR02894 DNA_bind_RsfA transc 66.2 40 0.00087 30.0 8.1 36 163-198 101-136 (161)
85 PRK11637 AmiB activator; Provi 65.7 61 0.0013 31.5 10.1 12 159-170 75-86 (428)
86 COG4942 Membrane-bound metallo 65.6 49 0.0011 33.4 9.5 59 138-196 38-96 (420)
87 PF12999 PRKCSH-like: Glucosid 65.5 38 0.00082 30.4 7.9 37 151-187 138-174 (176)
88 PF10224 DUF2205: Predicted co 64.9 42 0.00092 26.5 7.3 41 159-199 23-63 (80)
89 KOG1103 Predicted coiled-coil 64.9 15 0.00034 36.8 5.9 66 161-226 261-327 (561)
90 COG4985 ABC-type phosphate tra 64.9 23 0.00049 33.8 6.7 41 170-210 218-258 (289)
91 PF11559 ADIP: Afadin- and alp 64.7 82 0.0018 26.2 9.8 37 141-177 48-84 (151)
92 PHA03155 hypothetical protein; 64.1 13 0.00028 31.4 4.5 26 176-201 11-36 (115)
93 PF13863 DUF4200: Domain of un 63.8 62 0.0013 25.8 8.3 22 175-196 83-104 (126)
94 PF07558 Shugoshin_N: Shugoshi 63.6 8.2 0.00018 27.2 2.8 44 139-183 2-45 (46)
95 PF07106 TBPIP: Tat binding pr 63.4 31 0.00067 29.3 6.8 45 161-205 95-141 (169)
96 PF10226 DUF2216: Uncharacteri 63.3 52 0.0011 30.1 8.5 38 162-199 104-141 (195)
97 COG1792 MreC Cell shape-determ 63.0 22 0.00047 33.4 6.3 41 159-199 66-109 (284)
98 PHA03162 hypothetical protein; 62.9 11 0.00025 32.5 4.0 24 176-199 16-39 (135)
99 PF01486 K-box: K-box region; 62.5 22 0.00047 28.0 5.3 28 170-197 72-99 (100)
100 PRK11637 AmiB activator; Provi 62.4 75 0.0016 30.9 10.0 23 168-190 98-120 (428)
101 PF14775 NYD-SP28_assoc: Sperm 61.6 27 0.00058 25.9 5.3 23 176-198 36-58 (60)
102 PF00170 bZIP_1: bZIP transcri 61.4 59 0.0013 23.5 9.5 31 159-189 33-63 (64)
103 PF10805 DUF2730: Protein of u 61.3 48 0.001 26.7 7.2 40 158-197 48-89 (106)
104 PF01920 Prefoldin_2: Prefoldi 61.2 50 0.0011 25.2 7.0 41 158-198 61-101 (106)
105 PRK02119 hypothetical protein; 60.6 66 0.0014 24.6 7.5 22 162-183 5-26 (73)
106 PF09726 Macoilin: Transmembra 60.4 66 0.0014 34.2 9.9 29 167-195 546-574 (697)
107 KOG4797 Transcriptional regula 60.3 33 0.00072 29.1 6.2 27 155-181 70-96 (123)
108 KOG3335 Predicted coiled-coil 60.3 12 0.00026 33.8 3.8 42 155-196 109-150 (181)
109 KOG4196 bZIP transcription fac 60.0 58 0.0013 28.3 7.8 35 169-203 77-111 (135)
110 PF04728 LPP: Lipoprotein leuc 59.8 33 0.00072 25.6 5.5 24 161-184 5-28 (56)
111 KOG0971 Microtubule-associated 59.7 75 0.0016 35.6 10.2 63 141-203 283-362 (1243)
112 PRK15422 septal ring assembly 59.6 37 0.00081 27.0 6.1 40 159-198 4-43 (79)
113 PF11500 Cut12: Spindle pole b 59.5 91 0.002 27.4 9.1 49 138-186 84-132 (152)
114 PRK04406 hypothetical protein; 59.2 71 0.0015 24.6 7.5 22 163-184 8-29 (75)
115 PF05812 Herpes_BLRF2: Herpesv 58.9 18 0.00039 30.6 4.5 29 157-185 1-29 (118)
116 PF11559 ADIP: Afadin- and alp 58.1 1.1E+02 0.0024 25.5 9.8 9 67-75 4-12 (151)
117 TIGR03752 conj_TIGR03752 integ 57.9 24 0.00052 36.1 5.9 28 172-199 108-135 (472)
118 PF11932 DUF3450: Protein of u 56.8 1.4E+02 0.003 27.0 10.1 27 160-186 71-97 (251)
119 PF05266 DUF724: Protein of un 56.8 1E+02 0.0022 27.6 9.1 18 164-181 129-146 (190)
120 PF04156 IncA: IncA protein; 56.6 1.3E+02 0.0027 25.7 9.9 33 147-179 118-150 (191)
121 TIGR00414 serS seryl-tRNA synt 56.6 48 0.001 32.7 7.7 67 142-208 50-118 (418)
122 smart00338 BRLZ basic region l 56.3 74 0.0016 23.0 8.9 17 178-194 31-47 (65)
123 PF04849 HAP1_N: HAP1 N-termin 56.3 38 0.00083 32.8 6.8 43 156-198 224-266 (306)
124 COG3074 Uncharacterized protei 56.1 40 0.00087 26.7 5.7 38 160-197 5-42 (79)
125 PF12711 Kinesin-relat_1: Kine 56.1 37 0.0008 27.3 5.6 38 166-203 24-67 (86)
126 PLN02320 seryl-tRNA synthetase 56.1 39 0.00085 34.6 7.2 67 142-208 113-179 (502)
127 cd00632 Prefoldin_beta Prefold 54.8 63 0.0014 25.5 6.8 43 157-199 61-103 (105)
128 PF12329 TMF_DNA_bd: TATA elem 54.6 52 0.0011 25.1 6.1 40 159-198 33-72 (74)
129 PF07926 TPR_MLP1_2: TPR/MLP1/ 54.5 62 0.0014 26.7 7.0 37 162-198 94-130 (132)
130 KOG1853 LIS1-interacting prote 54.5 1.1E+02 0.0024 29.7 9.4 55 141-195 27-81 (333)
131 COG4026 Uncharacterized protei 54.2 95 0.0021 29.6 8.8 29 168-196 172-200 (290)
132 PF12709 Kinetocho_Slk19: Cent 53.9 66 0.0014 26.0 6.7 20 177-196 53-72 (87)
133 PF10211 Ax_dynein_light: Axon 53.7 1.2E+02 0.0025 26.9 9.0 16 67-82 69-84 (189)
134 KOG3910 Helix loop helix trans 53.4 70 0.0015 33.5 8.4 46 126-175 507-552 (632)
135 PF12718 Tropomyosin_1: Tropom 53.3 49 0.0011 28.1 6.3 33 164-196 26-58 (143)
136 PRK09039 hypothetical protein; 53.1 1.2E+02 0.0027 29.1 9.7 12 167-178 145-156 (343)
137 PF07334 IFP_35_N: Interferon- 53.0 31 0.00068 27.2 4.6 32 168-199 2-33 (76)
138 PF02183 HALZ: Homeobox associ 52.8 56 0.0012 23.0 5.5 34 164-197 10-43 (45)
139 PF06698 DUF1192: Protein of u 52.7 43 0.00092 25.2 5.1 25 161-185 23-47 (59)
140 PHA03155 hypothetical protein; 52.6 19 0.00042 30.4 3.7 25 160-184 9-33 (115)
141 PF14282 FlxA: FlxA-like prote 52.4 60 0.0013 26.2 6.4 14 158-171 50-63 (106)
142 PRK00295 hypothetical protein; 52.4 99 0.0022 23.3 7.2 34 160-193 20-53 (68)
143 PRK00736 hypothetical protein; 52.4 99 0.0022 23.3 7.5 34 160-193 20-53 (68)
144 PF05700 BCAS2: Breast carcino 52.3 1.8E+02 0.0038 26.2 10.1 36 163-198 179-214 (221)
145 PF07926 TPR_MLP1_2: TPR/MLP1/ 52.2 1.3E+02 0.0029 24.7 9.6 26 158-183 104-129 (132)
146 PF07767 Nop53: Nop53 (60S rib 52.1 1.1E+02 0.0024 29.4 9.3 23 32-54 181-203 (387)
147 PF07795 DUF1635: Protein of u 52.0 74 0.0016 29.5 7.6 54 142-195 16-69 (214)
148 PF07246 Phlebovirus_NSM: Phle 51.8 71 0.0015 30.5 7.6 47 27-73 31-85 (264)
149 TIGR02209 ftsL_broad cell divi 51.7 70 0.0015 23.8 6.3 34 166-199 24-57 (85)
150 PRK05431 seryl-tRNA synthetase 51.6 68 0.0015 31.7 7.8 50 161-210 68-117 (425)
151 PRK10803 tol-pal system protei 51.5 37 0.00081 31.3 5.7 37 160-196 55-91 (263)
152 KOG0709 CREB/ATF family transc 51.4 43 0.00092 34.3 6.5 24 176-199 275-298 (472)
153 PF12777 MT: Microtubule-bindi 51.3 84 0.0018 29.9 8.2 65 134-198 217-281 (344)
154 PF05300 DUF737: Protein of un 51.1 66 0.0014 29.0 7.0 46 147-192 122-167 (187)
155 PF09304 Cortex-I_coil: Cortex 51.1 1.5E+02 0.0032 24.9 9.9 60 137-196 15-74 (107)
156 KOG1265 Phospholipase C [Lipid 50.9 1.6E+02 0.0035 33.0 10.9 63 137-199 1027-1101(1189)
157 cd04776 HTH_GnyR Helix-Turn-He 50.7 91 0.002 25.3 7.3 37 159-195 80-116 (118)
158 PRK11546 zraP zinc resistance 50.6 1.3E+02 0.0028 26.2 8.5 35 132-166 43-77 (143)
159 PF10205 KLRAQ: Predicted coil 50.3 1.5E+02 0.0032 24.6 9.7 50 145-194 25-75 (102)
160 PF06210 DUF1003: Protein of u 49.8 1.1E+02 0.0024 25.1 7.7 43 143-190 55-97 (108)
161 PF12709 Kinetocho_Slk19: Cent 49.8 78 0.0017 25.6 6.5 31 157-187 40-70 (87)
162 KOG1645 RING-finger-containing 49.7 89 0.0019 31.9 8.3 59 134-198 53-111 (463)
163 PHA03162 hypothetical protein; 49.5 13 0.00028 32.2 2.2 28 156-183 10-37 (135)
164 PRK01203 prefoldin subunit alp 49.3 51 0.0011 28.2 5.8 40 162-201 3-42 (130)
165 TIGR02338 gimC_beta prefoldin, 49.3 85 0.0018 25.1 6.8 41 158-198 66-106 (110)
166 PRK02793 phi X174 lysis protei 49.0 1.2E+02 0.0025 23.1 7.5 33 161-193 24-56 (72)
167 PRK09413 IS2 repressor TnpA; R 49.0 42 0.00092 27.1 5.1 29 168-196 73-101 (121)
168 PF05529 Bap31: B-cell recepto 49.0 1.3E+02 0.0028 26.1 8.4 32 167-198 155-186 (192)
169 TIGR03752 conj_TIGR03752 integ 48.9 41 0.0009 34.4 6.0 36 164-199 107-142 (472)
170 PF07888 CALCOCO1: Calcium bin 48.8 1.3E+02 0.0029 31.3 9.7 43 137-179 149-191 (546)
171 PF06785 UPF0242: Uncharacteri 48.5 59 0.0013 32.4 6.8 22 156-177 198-219 (401)
172 PF10481 CENP-F_N: Cenp-F N-te 48.4 1.2E+02 0.0026 29.5 8.6 60 141-200 70-129 (307)
173 COG3883 Uncharacterized protei 48.2 1.3E+02 0.0028 28.7 8.8 61 142-205 56-116 (265)
174 KOG0977 Nuclear envelope prote 47.9 1E+02 0.0022 32.2 8.6 39 161-199 150-188 (546)
175 PF04728 LPP: Lipoprotein leuc 47.9 1.2E+02 0.0025 22.8 6.7 31 167-197 4-34 (56)
176 cd00890 Prefoldin Prefoldin is 47.4 80 0.0017 24.9 6.4 31 167-197 95-125 (129)
177 PRK09343 prefoldin subunit bet 47.3 93 0.002 25.6 6.9 58 130-190 50-109 (121)
178 COG4942 Membrane-bound metallo 47.2 2.9E+02 0.0062 28.1 11.4 9 223-231 298-306 (420)
179 PTZ00454 26S protease regulato 47.2 81 0.0018 30.9 7.6 36 159-194 29-64 (398)
180 PLN02678 seryl-tRNA synthetase 47.1 75 0.0016 32.0 7.4 66 142-207 53-119 (448)
181 PF11365 DUF3166: Protein of u 47.1 75 0.0016 26.0 6.1 38 162-199 4-41 (96)
182 PF14916 CCDC92: Coiled-coil d 46.9 42 0.00091 25.3 4.3 42 159-200 3-48 (60)
183 PF15619 Lebercilin: Ciliary p 46.8 38 0.00082 30.3 4.8 30 167-196 13-42 (194)
184 cd07596 BAR_SNX The Bin/Amphip 46.8 1.7E+02 0.0038 24.4 9.7 22 142-163 114-135 (218)
185 PF04999 FtsL: Cell division p 46.6 56 0.0012 25.2 5.2 23 173-195 42-64 (97)
186 PF11544 Spc42p: Spindle pole 46.5 1.2E+02 0.0025 24.1 6.9 34 155-188 22-55 (76)
187 COG2900 SlyX Uncharacterized p 46.5 96 0.0021 24.4 6.4 36 159-194 8-43 (72)
188 PTZ00454 26S protease regulato 46.5 69 0.0015 31.4 7.0 42 160-201 23-64 (398)
189 PF05103 DivIVA: DivIVA protei 46.3 12 0.00027 29.8 1.6 34 159-192 25-58 (131)
190 PF04102 SlyX: SlyX; InterPro 46.1 76 0.0016 23.7 5.7 36 160-195 19-54 (69)
191 PF12718 Tropomyosin_1: Tropom 46.1 1.8E+02 0.004 24.7 8.7 33 163-195 32-64 (143)
192 TIGR00993 3a0901s04IAP86 chlor 45.9 61 0.0013 35.0 6.9 30 144-173 416-445 (763)
193 PF01763 Herpes_UL6: Herpesvir 45.3 3.9E+02 0.0085 28.1 14.9 33 40-73 288-320 (557)
194 PF13851 GAS: Growth-arrest sp 45.1 74 0.0016 28.4 6.4 22 178-199 98-119 (201)
195 PF07047 OPA3: Optic atrophy 3 45.0 46 0.00099 27.9 4.8 21 159-179 112-132 (134)
196 KOG1055 GABA-B ion channel rec 44.8 7.6 0.00016 42.0 0.1 63 138-200 726-793 (865)
197 PF04859 DUF641: Plant protein 44.8 42 0.00091 28.7 4.6 34 161-194 96-129 (131)
198 KOG4593 Mitotic checkpoint pro 44.4 1.3E+02 0.0027 32.5 8.8 61 146-206 485-585 (716)
199 PF15070 GOLGA2L5: Putative go 44.3 1.5E+02 0.0032 31.3 9.2 55 145-199 108-172 (617)
200 PF09325 Vps5: Vps5 C terminal 44.3 1.3E+02 0.0027 26.1 7.6 47 157-203 29-75 (236)
201 cd07666 BAR_SNX7 The Bin/Amphi 44.2 1.6E+02 0.0035 27.5 8.6 44 142-185 153-196 (243)
202 PF14197 Cep57_CLD_2: Centroso 43.8 1.2E+02 0.0026 23.0 6.5 14 183-196 50-63 (69)
203 PF10805 DUF2730: Protein of u 43.7 60 0.0013 26.2 5.2 38 162-199 45-84 (106)
204 PF09486 HrpB7: Bacterial type 43.6 93 0.002 27.4 6.6 42 158-199 78-119 (158)
205 KOG1318 Helix loop helix trans 43.2 50 0.0011 33.3 5.5 34 163-196 294-327 (411)
206 KOG0995 Centromere-associated 43.0 1.8E+02 0.0039 30.7 9.5 78 158-235 279-367 (581)
207 PF09755 DUF2046: Uncharacteri 43.0 2.8E+02 0.006 27.2 10.3 24 175-198 180-203 (310)
208 COG1382 GimC Prefoldin, chaper 43.0 2.1E+02 0.0045 24.3 8.8 34 159-192 77-110 (119)
209 TIGR01242 26Sp45 26S proteasom 42.9 60 0.0013 30.6 5.8 33 161-193 8-40 (364)
210 PF04599 Pox_G5: Poxvirus G5 p 42.9 88 0.0019 31.7 7.2 25 147-171 87-111 (425)
211 PF09728 Taxilin: Myosin-like 42.8 2.4E+02 0.0053 26.9 9.9 54 142-195 54-107 (309)
212 PF11471 Sugarporin_N: Maltopo 42.6 49 0.0011 24.7 4.1 28 163-190 29-56 (60)
213 PF11068 YlqD: YlqD protein; 42.6 1.4E+02 0.0031 25.3 7.4 32 157-188 18-49 (131)
214 COG0172 SerS Seryl-tRNA synthe 42.5 1E+02 0.0022 31.2 7.5 70 143-212 50-121 (429)
215 PF13747 DUF4164: Domain of un 42.3 1.7E+02 0.0037 23.1 8.4 57 136-192 9-65 (89)
216 PF10224 DUF2205: Predicted co 42.3 1.5E+02 0.0032 23.4 7.0 34 162-195 19-52 (80)
217 PF09789 DUF2353: Uncharacteri 42.2 2E+02 0.0042 28.2 9.2 40 163-202 76-115 (319)
218 cd07429 Cby_like Chibby, a nuc 42.0 40 0.00087 28.1 3.9 24 167-190 80-103 (108)
219 PF08537 NBP1: Fungal Nap bind 41.9 2.4E+02 0.0051 27.8 9.7 22 137-158 121-142 (323)
220 PRK12704 phosphodiesterase; Pr 41.8 2.2E+02 0.0048 29.2 9.9 8 181-188 125-132 (520)
221 PRK14148 heat shock protein Gr 41.8 82 0.0018 28.5 6.2 23 171-193 52-74 (195)
222 PF06424 PRP1_N: PRP1 splicing 41.7 1.9E+02 0.0041 24.8 8.1 23 130-152 58-80 (133)
223 KOG2391 Vacuolar sorting prote 41.3 81 0.0018 31.4 6.5 21 173-193 253-273 (365)
224 PF05529 Bap31: B-cell recepto 41.3 1.5E+02 0.0033 25.6 7.6 12 185-196 159-170 (192)
225 PF04111 APG6: Autophagy prote 40.9 78 0.0017 30.2 6.2 31 155-185 60-90 (314)
226 PF13094 CENP-Q: CENP-Q, a CEN 40.7 1.4E+02 0.0029 25.2 7.1 33 160-192 49-81 (160)
227 KOG0818 GTPase-activating prot 40.5 51 0.0011 34.6 5.1 44 157-200 421-464 (669)
228 PF09755 DUF2046: Uncharacteri 40.2 2.6E+02 0.0056 27.4 9.6 29 161-189 137-165 (310)
229 PF07716 bZIP_2: Basic region 40.0 1.3E+02 0.0028 21.1 6.6 23 175-197 27-49 (54)
230 PF12808 Mto2_bdg: Micro-tubul 39.9 98 0.0021 22.7 5.2 25 162-186 25-49 (52)
231 PF01486 K-box: K-box region; 39.9 1.7E+02 0.0036 22.9 7.0 33 151-183 63-99 (100)
232 PF08781 DP: Transcription fac 39.9 1.5E+02 0.0034 25.7 7.3 15 155-169 18-32 (142)
233 PF02403 Seryl_tRNA_N: Seryl-t 39.8 85 0.0018 24.6 5.4 19 176-194 77-95 (108)
234 PF09311 Rab5-bind: Rabaptin-l 39.7 16 0.00035 31.9 1.4 36 163-198 12-47 (181)
235 PF04201 TPD52: Tumour protein 39.6 82 0.0018 28.1 5.7 27 170-196 40-66 (162)
236 TIGR03689 pup_AAA proteasome A 39.5 76 0.0017 32.5 6.3 39 162-200 4-42 (512)
237 PRK00846 hypothetical protein; 39.2 1.9E+02 0.0041 22.7 7.2 35 160-194 28-62 (77)
238 PF00769 ERM: Ezrin/radixin/mo 39.2 3.1E+02 0.0067 25.2 9.9 34 159-192 33-66 (246)
239 PF08286 Spc24: Spc24 subunit 39.2 7.1 0.00015 31.8 -0.9 7 210-216 58-64 (118)
240 PF08961 DUF1875: Domain of un 39.1 10 0.00022 35.6 0.0 33 160-192 130-162 (243)
241 PF14197 Cep57_CLD_2: Centroso 38.7 88 0.0019 23.8 5.1 18 180-197 40-57 (69)
242 PRK14160 heat shock protein Gr 38.6 1.2E+02 0.0025 27.9 6.7 38 161-198 63-100 (211)
243 PRK03992 proteasome-activating 38.3 1.1E+02 0.0025 29.4 7.0 34 164-197 13-46 (389)
244 PRK04325 hypothetical protein; 38.2 1.8E+02 0.0039 22.2 7.4 31 161-191 25-55 (74)
245 KOG0982 Centrosomal protein Nu 38.2 1.4E+02 0.003 30.8 7.7 28 176-203 300-327 (502)
246 PF05565 Sipho_Gp157: Siphovir 38.0 1.1E+02 0.0024 26.3 6.2 39 159-197 47-85 (162)
247 PF13879 KIAA1430: KIAA1430 ho 37.4 1.8E+02 0.0039 22.0 6.9 12 167-178 37-48 (98)
248 PF05769 DUF837: Protein of un 37.2 1.2E+02 0.0026 26.9 6.5 23 176-198 156-178 (181)
249 PRK03947 prefoldin subunit alp 36.9 1E+02 0.0022 25.3 5.7 28 164-191 106-133 (140)
250 PF14645 Chibby: Chibby family 36.9 55 0.0012 27.2 4.0 27 171-197 69-95 (116)
251 KOG2483 Upstream transcription 36.8 88 0.0019 29.1 5.7 37 155-198 101-137 (232)
252 KOG4786 Ubinuclein, nuclear pr 36.8 64 0.0014 35.3 5.4 44 36-79 14-72 (1136)
253 PF07106 TBPIP: Tat binding pr 36.7 63 0.0014 27.4 4.5 36 161-196 88-125 (169)
254 KOG0995 Centromere-associated 36.5 2.1E+02 0.0046 30.2 8.9 37 164-200 306-352 (581)
255 KOG1029 Endocytic adaptor prot 36.4 2.1E+02 0.0046 31.8 9.1 14 65-78 247-261 (1118)
256 COG3879 Uncharacterized protei 36.4 3.4E+02 0.0073 25.8 9.5 61 142-205 54-114 (247)
257 PF11382 DUF3186: Protein of u 36.4 70 0.0015 30.3 5.1 39 159-197 32-70 (308)
258 PTZ00446 vacuolar sorting prot 36.3 3.2E+02 0.0069 24.7 9.0 50 147-196 66-124 (191)
259 PRK09039 hypothetical protein; 36.2 3E+02 0.0066 26.5 9.5 16 170-185 169-184 (343)
260 PF08647 BRE1: BRE1 E3 ubiquit 35.8 2.2E+02 0.0048 22.5 9.7 59 140-198 5-70 (96)
261 PF04880 NUDE_C: NUDE protein, 35.4 60 0.0013 28.8 4.2 19 178-196 29-47 (166)
262 smart00340 HALZ homeobox assoc 35.4 70 0.0015 23.0 3.7 25 175-199 7-31 (44)
263 KOG4673 Transcription factor T 35.3 1.9E+02 0.0041 31.7 8.4 56 144-199 569-624 (961)
264 PF15035 Rootletin: Ciliary ro 35.3 1E+02 0.0023 27.3 5.8 24 172-195 94-117 (182)
265 PF15556 Zwint: ZW10 interacto 35.2 3.2E+02 0.0069 25.8 9.0 28 145-172 113-140 (252)
266 PRK14872 rod shape-determining 35.1 1E+02 0.0022 30.2 6.1 39 159-197 57-98 (337)
267 KOG0946 ER-Golgi vesicle-tethe 35.0 2.8E+02 0.0061 30.8 9.7 67 131-197 642-716 (970)
268 TIGR03495 phage_LysB phage lys 34.9 1.8E+02 0.0038 25.1 6.9 21 175-195 77-97 (135)
269 PF09006 Surfac_D-trimer: Lung 34.8 1.1E+02 0.0023 22.2 4.7 22 162-183 2-23 (46)
270 PTZ00464 SNF-7-like protein; P 34.7 3.6E+02 0.0077 24.6 9.5 20 147-166 60-79 (211)
271 TIGR00293 prefoldin, archaeal 34.7 1.8E+02 0.004 23.3 6.7 19 165-183 99-117 (126)
272 PRK14161 heat shock protein Gr 34.6 1.3E+02 0.0027 26.8 6.2 23 171-193 31-53 (178)
273 PF08317 Spc7: Spc7 kinetochor 34.6 4E+02 0.0088 25.2 10.2 38 159-196 230-267 (325)
274 PF14584 DUF4446: Protein of u 34.6 2.5E+02 0.0055 24.3 7.9 35 163-197 43-77 (151)
275 PRK11239 hypothetical protein; 34.5 68 0.0015 29.8 4.6 26 162-187 186-211 (215)
276 PF07888 CALCOCO1: Calcium bin 34.4 3E+02 0.0066 28.8 9.6 39 159-197 157-195 (546)
277 PF10498 IFT57: Intra-flagella 34.2 4.3E+02 0.0093 26.0 10.2 26 176-201 297-322 (359)
278 PF14362 DUF4407: Domain of un 33.9 3.8E+02 0.0082 24.7 9.6 35 163-197 132-166 (301)
279 COG4420 Predicted membrane pro 33.8 2.1E+02 0.0045 26.3 7.4 59 143-201 109-169 (191)
280 KOG4739 Uncharacterized protei 33.7 4E+02 0.0087 25.0 9.5 54 142-199 99-152 (233)
281 KOG3650 Predicted coiled-coil 33.6 2.8E+02 0.0061 23.4 7.6 40 160-199 64-103 (120)
282 PF04899 MbeD_MobD: MbeD/MobD 33.5 2.2E+02 0.0048 21.9 6.6 37 162-198 31-67 (70)
283 cd07429 Cby_like Chibby, a nuc 33.3 1.1E+02 0.0025 25.5 5.3 21 176-196 75-95 (108)
284 PF04340 DUF484: Protein of un 33.2 1.5E+02 0.0032 26.3 6.4 13 250-262 183-195 (225)
285 KOG0483 Transcription factor H 33.2 71 0.0015 29.0 4.4 40 161-200 107-146 (198)
286 PF07047 OPA3: Optic atrophy 3 33.1 1.2E+02 0.0025 25.5 5.5 24 162-185 108-131 (134)
287 COG1730 GIM5 Predicted prefold 33.0 1.8E+02 0.004 25.2 6.7 35 162-196 104-138 (145)
288 PRK13923 putative spore coat p 32.9 2.4E+02 0.0051 25.3 7.5 40 159-198 111-150 (170)
289 PF04859 DUF641: Plant protein 32.8 1.3E+02 0.0027 25.9 5.6 42 158-199 79-120 (131)
290 KOG3561 Aryl-hydrocarbon recep 32.7 67 0.0015 34.9 4.8 76 148-225 26-110 (803)
291 KOG0447 Dynamin-like GTP bindi 32.6 1.1E+02 0.0024 33.0 6.2 45 155-200 223-271 (980)
292 PF03980 Nnf1: Nnf1 ; InterPr 32.4 1.1E+02 0.0024 24.2 4.9 30 170-199 77-106 (109)
293 KOG4001 Axonemal dynein light 32.4 2.9E+02 0.0062 26.1 8.2 22 178-199 233-254 (259)
294 PF09304 Cortex-I_coil: Cortex 32.4 2.1E+02 0.0046 24.0 6.7 20 153-172 10-29 (107)
295 KOG2896 UV radiation resistanc 32.4 3.3E+02 0.0072 27.4 9.1 15 232-246 207-221 (377)
296 COG1730 GIM5 Predicted prefold 32.3 1.3E+02 0.0028 26.1 5.7 46 138-183 94-139 (145)
297 PF09744 Jnk-SapK_ap_N: JNK_SA 32.3 2.3E+02 0.0049 24.9 7.2 16 164-179 94-109 (158)
298 PF08702 Fib_alpha: Fibrinogen 32.2 3.3E+02 0.007 23.4 9.1 43 161-203 92-134 (146)
299 KOG1656 Protein involved in gl 32.1 1.3E+02 0.0028 28.1 5.9 25 142-166 55-79 (221)
300 PF14662 CCDC155: Coiled-coil 32.0 1.5E+02 0.0033 27.1 6.3 34 160-193 68-101 (193)
301 COG3879 Uncharacterized protei 31.9 2.1E+02 0.0046 27.1 7.4 56 160-215 58-117 (247)
302 PF00038 Filament: Intermediat 31.8 3.3E+02 0.0071 24.9 8.6 50 148-197 198-247 (312)
303 PHA00728 hypothetical protein 31.8 34 0.00074 29.7 2.1 68 180-257 5-74 (151)
304 PF08946 Osmo_CC: Osmosensory 31.7 1E+02 0.0022 22.4 4.1 29 158-186 11-39 (46)
305 PF05278 PEARLI-4: Arabidopsis 31.7 4.7E+02 0.01 25.1 10.0 17 34-50 52-68 (269)
306 PRK03947 prefoldin subunit alp 31.7 1.6E+02 0.0034 24.2 5.9 41 157-197 4-44 (140)
307 PF04999 FtsL: Cell division p 31.5 1.9E+02 0.0042 22.2 6.1 27 161-187 44-70 (97)
308 PF07989 Microtub_assoc: Micro 31.5 1.6E+02 0.0034 22.7 5.5 31 169-199 39-69 (75)
309 PF05149 Flagellar_rod: Parafl 31.4 1.9E+02 0.0041 27.9 7.1 76 148-227 176-269 (289)
310 PF02724 CDC45: CDC45-like pro 31.2 58 0.0013 33.9 4.0 17 187-203 261-277 (622)
311 PF02996 Prefoldin: Prefoldin 31.1 1.3E+02 0.0029 23.5 5.3 25 163-187 88-112 (120)
312 cd07627 BAR_Vps5p The Bin/Amph 31.0 2E+02 0.0043 25.5 6.8 46 155-200 7-52 (216)
313 COG4372 Uncharacterized protei 31.0 4.9E+02 0.011 26.8 10.1 51 143-193 128-178 (499)
314 PF06305 DUF1049: Protein of u 30.9 71 0.0015 22.8 3.4 19 174-192 49-67 (68)
315 PF08537 NBP1: Fungal Nap bind 30.9 1.5E+02 0.0033 29.1 6.4 37 161-197 184-220 (323)
316 PF14662 CCDC155: Coiled-coil 30.8 1.3E+02 0.0029 27.5 5.7 38 160-197 9-53 (193)
317 KOG0288 WD40 repeat protein Ti 30.4 4.1E+02 0.0089 27.3 9.5 23 158-180 47-69 (459)
318 PRK09343 prefoldin subunit bet 30.2 3.1E+02 0.0068 22.5 8.8 44 157-200 69-112 (121)
319 PF11336 DUF3138: Protein of u 30.1 1.1E+02 0.0023 31.7 5.4 26 174-199 26-51 (514)
320 PF12999 PRKCSH-like: Glucosid 30.1 4.1E+02 0.0089 23.9 8.6 6 75-80 58-63 (176)
321 PF02996 Prefoldin: Prefoldin 30.0 1.7E+02 0.0036 23.0 5.6 23 162-184 94-116 (120)
322 KOG4571 Activating transcripti 29.9 5.3E+02 0.012 25.1 11.5 50 136-185 229-281 (294)
323 cd07664 BAR_SNX2 The Bin/Amphi 29.8 2.3E+02 0.005 26.0 7.2 53 155-207 25-77 (234)
324 KOG0837 Transcriptional activa 29.6 3.9E+02 0.0084 25.9 8.8 69 127-198 191-259 (279)
325 PF05557 MAD: Mitotic checkpoi 29.4 1.8E+02 0.0039 30.4 7.2 23 179-201 565-587 (722)
326 PF02344 Myc-LZ: Myc leucine z 29.2 1.4E+02 0.003 20.2 4.2 26 178-203 6-31 (32)
327 COG4026 Uncharacterized protei 29.1 1.9E+02 0.004 27.7 6.5 30 170-199 160-189 (290)
328 PF06785 UPF0242: Uncharacteri 29.0 1.3E+02 0.0027 30.2 5.6 33 155-187 123-155 (401)
329 PF02185 HR1: Hr1 repeat; Int 29.0 2.3E+02 0.0051 20.7 6.1 49 138-186 8-60 (70)
330 PF02841 GBP_C: Guanylate-bind 28.8 4.8E+02 0.01 24.2 10.3 29 155-183 225-253 (297)
331 PF03961 DUF342: Protein of un 28.8 5.1E+02 0.011 25.5 9.9 33 167-199 376-408 (451)
332 PF05103 DivIVA: DivIVA protei 28.7 22 0.00047 28.4 0.4 42 159-200 32-73 (131)
333 KOG1318 Helix loop helix trans 28.6 3.2E+02 0.0069 27.7 8.4 26 176-201 300-325 (411)
334 PF07989 Microtub_assoc: Micro 28.5 2.8E+02 0.006 21.4 6.4 16 163-178 4-19 (75)
335 COG1579 Zn-ribbon protein, pos 28.5 5E+02 0.011 24.4 9.4 17 160-176 53-69 (239)
336 PF15369 KIAA1328: Uncharacter 28.4 5.6E+02 0.012 25.3 9.8 40 153-192 27-69 (328)
337 PF07439 DUF1515: Protein of u 28.3 3.7E+02 0.008 22.8 8.1 57 145-203 26-85 (112)
338 PF04420 CHD5: CHD5-like prote 28.2 3.2E+02 0.0069 23.5 7.4 24 176-199 69-92 (161)
339 PF08614 ATG16: Autophagy prot 28.1 4.1E+02 0.0088 23.2 9.3 18 178-195 149-166 (194)
340 PF05008 V-SNARE: Vesicle tran 28.1 2.5E+02 0.0053 20.7 6.9 39 159-197 32-78 (79)
341 PF11180 DUF2968: Protein of u 28.0 3.8E+02 0.0081 24.6 8.1 15 37-51 23-37 (192)
342 KOG2829 E2F-like protein [Tran 27.9 1.5E+02 0.0033 29.0 5.9 18 155-172 149-166 (326)
343 cd07624 BAR_SNX7_30 The Bin/Am 27.9 1.9E+02 0.0042 25.4 6.2 44 156-199 18-61 (200)
344 cd00632 Prefoldin_beta Prefold 27.8 2.2E+02 0.0047 22.5 5.9 34 159-192 70-103 (105)
345 PF11221 Med21: Subunit 21 of 27.7 2E+02 0.0044 24.2 6.1 34 165-198 103-136 (144)
346 PF05278 PEARLI-4: Arabidopsis 27.6 5.6E+02 0.012 24.6 10.1 14 168-181 216-229 (269)
347 PF09325 Vps5: Vps5 C terminal 27.6 4E+02 0.0087 23.0 8.5 24 142-165 132-155 (236)
348 smart00340 HALZ homeobox assoc 27.4 1.9E+02 0.0042 20.8 4.9 31 165-195 4-34 (44)
349 PF04849 HAP1_N: HAP1 N-termin 27.3 1E+02 0.0022 30.0 4.6 31 159-189 160-190 (306)
350 KOG0977 Nuclear envelope prote 27.1 2.2E+02 0.0047 29.9 7.2 44 152-195 35-78 (546)
351 TIGR01242 26Sp45 26S proteasom 27.1 1.9E+02 0.004 27.3 6.3 40 162-201 2-41 (364)
352 COG1729 Uncharacterized protei 27.1 1.2E+02 0.0027 28.7 5.1 20 161-180 58-77 (262)
353 PF14915 CCDC144C: CCDC144C pr 27.0 2.3E+02 0.005 27.7 6.9 45 152-196 21-79 (305)
354 PRK10963 hypothetical protein; 27.0 1.6E+02 0.0034 26.5 5.6 26 160-185 52-80 (223)
355 PRK14474 F0F1 ATP synthase sub 27.0 5E+02 0.011 23.9 9.8 37 137-173 35-71 (250)
356 PF10392 COG5: Golgi transport 27.0 2.4E+02 0.0052 23.2 6.3 43 159-201 72-114 (132)
357 PF02994 Transposase_22: L1 tr 26.9 2E+02 0.0044 28.0 6.7 39 159-197 144-182 (370)
358 PRK13729 conjugal transfer pil 26.6 1.6E+02 0.0035 30.3 6.1 24 159-182 97-120 (475)
359 TIGR02231 conserved hypothetic 26.5 3.5E+02 0.0076 27.0 8.4 35 167-201 139-173 (525)
360 PRK14011 prefoldin subunit alp 26.3 2.3E+02 0.0051 24.4 6.2 16 147-162 86-101 (144)
361 cd00890 Prefoldin Prefoldin is 26.2 2.2E+02 0.0048 22.3 5.7 26 163-188 98-123 (129)
362 PF04111 APG6: Autophagy prote 26.2 5.8E+02 0.013 24.3 10.4 14 214-227 156-169 (314)
363 KOG0980 Actin-binding protein 26.1 3.3E+02 0.0071 30.5 8.5 46 154-199 353-398 (980)
364 PF08317 Spc7: Spc7 kinetochor 26.1 3.6E+02 0.0079 25.5 8.1 27 174-200 238-264 (325)
365 PF10018 Med4: Vitamin-D-recep 26.1 2E+02 0.0043 25.2 5.9 14 223-236 123-136 (188)
366 PF09766 FimP: Fms-interacting 26.0 2.9E+02 0.0063 26.8 7.5 40 154-193 103-142 (355)
367 PRK03918 chromosome segregatio 25.8 5.4E+02 0.012 27.0 9.9 9 34-42 31-39 (880)
368 PF10393 Matrilin_ccoil: Trime 25.8 2.6E+02 0.0056 20.1 5.5 29 153-181 17-45 (47)
369 PF10211 Ax_dynein_light: Axon 25.7 4.7E+02 0.01 23.1 10.0 23 158-180 126-148 (189)
370 KOG2475 CDC45 (cell division c 25.7 3E+02 0.0066 29.1 7.9 18 186-203 254-271 (587)
371 KOG4378 Nuclear protein COP1 [ 25.5 1E+02 0.0022 32.5 4.5 22 174-195 651-672 (673)
372 TIGR02338 gimC_beta prefoldin, 25.4 2.4E+02 0.0052 22.5 5.8 43 145-190 63-105 (110)
373 PF13600 DUF4140: N-terminal d 25.2 2E+02 0.0043 22.3 5.2 19 163-181 81-99 (104)
374 KOG4010 Coiled-coil protein TP 25.0 2E+02 0.0043 26.7 5.7 31 166-196 51-81 (208)
375 KOG0614 cGMP-dependent protein 24.9 2.4E+02 0.0053 30.2 7.0 40 155-194 34-73 (732)
376 PF10212 TTKRSYEDQ: Predicted 24.9 3.3E+02 0.0071 28.5 7.9 50 148-197 298-351 (518)
377 TIGR02680 conserved hypothetic 24.5 3.1E+02 0.0067 31.3 8.3 42 158-199 741-782 (1353)
378 PF15058 Speriolin_N: Sperioli 24.5 76 0.0016 29.2 3.0 20 177-196 9-28 (200)
379 COG4238 Murein lipoprotein [Ce 24.5 2.6E+02 0.0056 22.3 5.6 39 160-198 33-71 (78)
380 PF10883 DUF2681: Protein of u 24.4 2.7E+02 0.0058 22.4 5.8 33 164-196 28-62 (87)
381 cd00584 Prefoldin_alpha Prefol 24.2 3.1E+02 0.0068 22.0 6.4 22 164-185 99-120 (129)
382 PHA02562 46 endonuclease subun 24.1 5.3E+02 0.011 25.4 9.0 14 174-187 380-393 (562)
383 PF13805 Pil1: Eisosome compon 24.0 3.6E+02 0.0077 25.9 7.5 21 142-162 131-151 (271)
384 TIGR00219 mreC rod shape-deter 23.6 1.7E+02 0.0038 27.4 5.4 17 169-185 69-85 (283)
385 COG2919 Septum formation initi 23.5 4.1E+02 0.0089 21.7 8.6 31 169-199 53-83 (117)
386 PF08172 CASP_C: CASP C termin 23.5 4E+02 0.0086 24.9 7.6 57 132-189 79-137 (248)
387 COG3416 Uncharacterized protei 23.5 1.1E+02 0.0024 28.6 4.0 28 161-188 50-77 (233)
388 PRK10698 phage shock protein P 23.4 3.9E+02 0.0084 24.2 7.4 7 154-160 91-97 (222)
389 PHA02109 hypothetical protein 23.3 2E+02 0.0044 26.5 5.5 33 157-189 191-223 (233)
390 PF14661 HAUS6_N: HAUS augmin- 23.3 4.1E+02 0.0089 24.2 7.6 39 158-196 167-208 (247)
391 KOG1029 Endocytic adaptor prot 23.3 5.1E+02 0.011 29.1 9.2 8 185-192 442-449 (1118)
392 PF10481 CENP-F_N: Cenp-F N-te 23.3 4.7E+02 0.01 25.6 8.2 25 142-166 22-46 (307)
393 PF14193 DUF4315: Domain of un 23.1 3.9E+02 0.0084 21.2 7.8 38 159-198 22-59 (83)
394 PRK11546 zraP zinc resistance 23.0 5.1E+02 0.011 22.6 10.8 19 167-185 90-108 (143)
395 PF10883 DUF2681: Protein of u 23.0 2.3E+02 0.005 22.8 5.2 30 167-196 24-53 (87)
396 PF11471 Sugarporin_N: Maltopo 22.9 1.9E+02 0.004 21.6 4.4 25 159-183 32-56 (60)
397 PF10473 CENP-F_leu_zip: Leuci 22.9 5E+02 0.011 22.4 8.8 16 159-174 24-39 (140)
398 COG5509 Uncharacterized small 22.9 1.5E+02 0.0033 22.8 3.9 22 177-198 29-50 (65)
399 PF04912 Dynamitin: Dynamitin 22.8 2E+02 0.0043 27.8 5.8 24 162-185 90-113 (388)
400 KOG0728 26S proteasome regulat 22.7 3.1E+02 0.0066 27.1 6.9 38 159-196 24-61 (404)
401 PRK00286 xseA exodeoxyribonucl 22.6 6.8E+02 0.015 24.4 9.4 11 70-80 216-226 (438)
402 PF13874 Nup54: Nucleoporin co 22.6 3.8E+02 0.0082 22.4 6.8 36 160-195 52-87 (141)
403 PRK13922 rod shape-determining 22.3 3E+02 0.0064 25.0 6.5 25 168-192 71-95 (276)
404 PF10482 CtIP_N: Tumour-suppre 22.3 2.9E+02 0.0063 23.7 5.9 20 177-196 100-119 (120)
405 PF11853 DUF3373: Protein of u 22.2 87 0.0019 32.2 3.3 26 160-185 32-57 (489)
406 KOG1319 bHLHZip transcription 22.1 6.5E+02 0.014 23.5 8.7 80 88-193 31-139 (229)
407 PF11180 DUF2968: Protein of u 22.0 6.2E+02 0.013 23.2 10.3 11 183-193 157-167 (192)
408 KOG2483 Upstream transcription 22.0 2.9E+02 0.0063 25.8 6.4 37 150-186 103-139 (232)
409 PF02403 Seryl_tRNA_N: Seryl-t 22.0 3.8E+02 0.0082 20.9 6.3 32 169-200 32-63 (108)
410 PF07407 Seadorna_VP6: Seadorn 21.9 1.5E+02 0.0033 29.7 4.7 16 159-174 46-61 (420)
411 PF12128 DUF3584: Protein of u 21.9 7E+02 0.015 28.0 10.3 66 134-199 464-530 (1201)
412 PF11690 DUF3287: Protein of u 21.8 4E+02 0.0086 22.4 6.5 34 159-192 42-77 (109)
413 cd07630 BAR_SNX_like The Bin/A 21.8 4.6E+02 0.01 23.4 7.5 44 155-198 7-50 (198)
414 KOG1962 B-cell receptor-associ 21.8 6.5E+02 0.014 23.4 8.6 31 167-197 159-189 (216)
415 COG1345 FliD Flagellar capping 21.8 3.2E+02 0.007 27.9 7.2 43 157-199 438-480 (483)
416 PF04568 IATP: Mitochondrial A 21.7 4.6E+02 0.0099 21.5 7.6 10 144-153 54-63 (100)
417 PRK12705 hypothetical protein; 21.6 6.4E+02 0.014 26.1 9.3 65 134-201 69-137 (508)
418 PF07412 Geminin: Geminin; In 21.6 2.3E+02 0.005 26.1 5.5 23 171-193 130-152 (200)
419 PF15254 CCDC14: Coiled-coil d 21.5 5.2E+02 0.011 28.6 8.8 29 169-197 451-479 (861)
420 KOG4643 Uncharacterized coiled 21.5 2.3E+02 0.0049 32.2 6.3 41 155-195 526-568 (1195)
421 PF00769 ERM: Ezrin/radixin/mo 21.3 5.8E+02 0.013 23.4 8.2 35 163-197 79-113 (246)
422 PF03962 Mnd1: Mnd1 family; I 21.2 5.8E+02 0.013 22.6 9.8 29 41-76 13-41 (188)
423 PF14077 WD40_alt: Alternative 21.1 81 0.0018 23.0 2.1 21 158-178 17-37 (48)
424 TIGR02977 phageshock_pspA phag 21.1 5.6E+02 0.012 22.8 7.9 47 149-195 89-135 (219)
425 PF13805 Pil1: Eisosome compon 21.1 2.7E+02 0.0059 26.6 6.1 47 138-184 144-190 (271)
426 PF14988 DUF4515: Domain of un 21.1 6.2E+02 0.013 22.9 9.6 33 162-194 152-184 (206)
427 PF05911 DUF869: Plant protein 21.0 4E+02 0.0087 29.0 8.0 52 151-202 126-212 (769)
428 PF05483 SCP-1: Synaptonemal c 21.0 5.8E+02 0.012 28.0 9.0 39 159-197 587-625 (786)
429 PF05308 Mito_fiss_reg: Mitoch 20.8 1.2E+02 0.0025 28.5 3.6 21 167-187 123-143 (253)
430 PF09766 FimP: Fms-interacting 20.8 3.3E+02 0.0072 26.4 6.8 40 143-182 113-152 (355)
431 PF15070 GOLGA2L5: Putative go 20.8 8.1E+02 0.018 25.9 10.0 42 158-199 28-69 (617)
432 PF09789 DUF2353: Uncharacteri 20.8 7.5E+02 0.016 24.2 9.1 27 177-203 76-102 (319)
433 KOG1760 Molecular chaperone Pr 20.8 3.4E+02 0.0073 23.6 6.0 37 162-198 84-120 (131)
434 COG3096 MukB Uncharacterized p 20.7 6.5E+02 0.014 28.4 9.3 48 148-199 1066-1113(1480)
435 PF09340 NuA4: Histone acetylt 20.7 2.2E+02 0.0048 22.1 4.6 29 160-188 3-31 (80)
436 PF04201 TPD52: Tumour protein 20.6 1.7E+02 0.0036 26.2 4.3 41 159-199 36-81 (162)
437 PF07767 Nop53: Nop53 (60S rib 20.5 7.8E+02 0.017 23.8 10.2 34 138-171 276-309 (387)
438 PHA02562 46 endonuclease subun 20.4 8.3E+02 0.018 24.0 9.7 14 179-192 378-391 (562)
439 PRK02224 chromosome segregatio 20.3 7.4E+02 0.016 26.1 9.7 6 44-49 117-122 (880)
440 PF14775 NYD-SP28_assoc: Sperm 20.2 1.8E+02 0.0038 21.6 3.8 21 164-184 38-58 (60)
441 PF06818 Fez1: Fez1; InterPro 20.2 5.8E+02 0.013 23.5 7.8 43 157-199 64-106 (202)
442 PF10205 KLRAQ: Predicted coil 20.2 5.1E+02 0.011 21.5 6.9 34 165-198 39-72 (102)
443 PRK15396 murein lipoprotein; P 20.1 2.9E+02 0.0062 21.8 5.1 27 162-188 35-61 (78)
444 KOG0996 Structural maintenance 20.1 5.3E+02 0.012 29.8 8.8 48 145-192 528-575 (1293)
445 PF04568 IATP: Mitochondrial A 20.0 2.7E+02 0.0059 22.8 5.2 28 155-182 68-99 (100)
446 PF14257 DUF4349: Domain of un 20.0 3.3E+02 0.0071 24.6 6.3 29 170-198 166-194 (262)
447 COG3132 Uncharacterized protei 20.0 1.4E+02 0.0029 27.6 3.7 20 164-183 190-209 (215)
No 1
>smart00338 BRLZ basic region leucin zipper.
Probab=99.53 E-value=7.1e-14 Score=102.31 Aligned_cols=63 Identities=41% Similarity=0.523 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 135 PISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 135 ~eeKR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
++.|+.+|+++||+||++||+||+.|+.+||.++..|+.+|..|..++..|..|+..|++++.
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345888999999999999999999999999999999999999999999999999999999874
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.42 E-value=1.2e-12 Score=95.66 Aligned_cols=62 Identities=45% Similarity=0.528 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 135 PISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 135 ~eeKR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
+..|+.+|+++||+||++||.||+.|+.+||.++..|+.+|..|...+..|..++..|+..+
T Consensus 2 ~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 2 KEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45678899999999999999999999999999999999999999999999999999999875
No 3
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.25 E-value=8.9e-12 Score=116.84 Aligned_cols=55 Identities=35% Similarity=0.471 Sum_probs=49.7
Q ss_pred CCCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 131 NADDPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCV 185 (264)
Q Consensus 131 d~dd~eeKR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L 185 (264)
..++...||+-||+|||+|||.||+|||+||+.||.+|..||.+|+.|-+.|..|
T Consensus 284 ~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtL 338 (348)
T KOG3584|consen 284 GAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTL 338 (348)
T ss_pred cchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHH
Confidence 4567788999999999999999999999999999999999999999988776655
No 4
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=99.23 E-value=9.4e-12 Score=121.86 Aligned_cols=69 Identities=30% Similarity=0.435 Sum_probs=64.4
Q ss_pred CChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024703 133 DDPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNA 201 (264)
Q Consensus 133 dd~eeKR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~~ 201 (264)
+++..||.||++||++|||.||+|||+||+.||.+|.....+|++|+++++.|..+|..|-+||.+.+.
T Consensus 246 EEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt 314 (472)
T KOG0709|consen 246 EERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQT 314 (472)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 355778999999999999999999999999999999999999999999999999999999999987653
No 5
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.21 E-value=6.5e-11 Score=117.97 Aligned_cols=67 Identities=34% Similarity=0.466 Sum_probs=57.8
Q ss_pred CCCCCCCCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 126 DTDNDNADDPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 126 ~~ee~d~dd~eeKR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
-+-....|.+.-||+.||+|||++|.+||+|||+|+..||.+++.|.+||.+|+ +||.+||+||...
T Consensus 269 stp~~~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk-------~ENatLk~qL~~l 335 (655)
T KOG4343|consen 269 STPNVGSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLK-------KENATLKRQLDEL 335 (655)
T ss_pred CCCCCccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHH
Confidence 344567788999999999999999999999999999999999999998888765 6788888887543
No 6
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.18 E-value=1.7e-10 Score=82.36 Aligned_cols=52 Identities=40% Similarity=0.498 Sum_probs=47.4
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 136 ISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAE 188 (264)
Q Consensus 136 eeKR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~E 188 (264)
+.++.+|. +||+||++||+|||+|+.+||.++..|+.+|..|..++..|..|
T Consensus 3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45667777 99999999999999999999999999999999999999888765
No 7
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=98.90 E-value=6.2e-09 Score=95.92 Aligned_cols=70 Identities=30% Similarity=0.345 Sum_probs=60.3
Q ss_pred CCCCCCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 024703 128 DNDNADDPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKL-------GRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 128 ee~d~dd~eeKR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L-------~~ql~~L~~EN~~LRqqLq 197 (264)
...+....++|-.||++|||+||+.+|.|||++++++|..++.|+.+|+.| +.+.+.|.++|+.|++.|.
T Consensus 59 ~RL~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le 135 (292)
T KOG4005|consen 59 RRLDHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELE 135 (292)
T ss_pred HhhcccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 467889999999999999999999999999999999999999988876654 5666677888888877764
No 8
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=98.57 E-value=2.1e-07 Score=86.45 Aligned_cols=74 Identities=27% Similarity=0.280 Sum_probs=64.9
Q ss_pred CCCCChhHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024703 130 DNADDPISKKRR-RQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYG 203 (264)
Q Consensus 130 ~d~dd~eeKR~r-RllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~~~g 203 (264)
-+.++.+..|.. ..+|||++|.+||+||-++|..||.+|+.+..+|..|...+..|......+||+++.|-.+|
T Consensus 197 id~e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~hi~ng 271 (279)
T KOG0837|consen 197 IDMEDQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVMEHIHNG 271 (279)
T ss_pred ccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345555666664 47899999999999999999999999999999999999999999999999999999876555
No 9
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=98.22 E-value=7.1e-06 Score=77.22 Aligned_cols=62 Identities=24% Similarity=0.218 Sum_probs=55.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 137 SKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 137 eKR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
.+.+|..+.|..||.|.|+|||+-.+.|+..+..|+.+|.+|+.++..+..|.+.|||.+..
T Consensus 226 ~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e 287 (294)
T KOG4571|consen 226 KKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILE 287 (294)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344467788899999999999999999999999999999999999999999999998754
No 10
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.08 E-value=3.5e-08 Score=77.31 Aligned_cols=60 Identities=32% Similarity=0.374 Sum_probs=46.6
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 136 ISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFS 195 (264)
Q Consensus 136 eeKR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqq 195 (264)
..|..||..+||.+|+.||.||+.++.+||..+..|..+...|..++..+..|...++++
T Consensus 28 ~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk~~ 87 (92)
T PF03131_consen 28 ELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELKRK 87 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999998887777666666555555554444433
No 11
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=97.95 E-value=5e-05 Score=70.09 Aligned_cols=67 Identities=21% Similarity=0.223 Sum_probs=59.2
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024703 135 PISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNA 201 (264)
Q Consensus 135 ~eeKR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~~ 201 (264)
+..+-..|..||-+|+++||.++|....+...|+..|++||..|+.++.+|..|+..||+.+.....
T Consensus 191 ~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~ 257 (269)
T KOG3119|consen 191 KDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLPK 257 (269)
T ss_pred CCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3344445668999999999999999999999999999999999999999999999999999876543
No 12
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=97.66 E-value=0.00037 Score=59.42 Aligned_cols=69 Identities=22% Similarity=0.203 Sum_probs=62.9
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 024703 136 ISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGA 204 (264)
Q Consensus 136 eeKR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~~~g~ 204 (264)
-.|.+||-+|||=-|+-||-|+-..-.+||.+-.+|.++..+|.+.+..+..|-..+|.++......+.
T Consensus 51 rlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 51 RLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 456778999999999999999999999999999999999999999999999999999999888777665
No 13
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=96.85 E-value=0.0015 Score=66.79 Aligned_cols=58 Identities=26% Similarity=0.223 Sum_probs=48.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 141 RRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 141 rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
||.=|||.||++||+||-.-|.+||..+..|..+-.+|.+.-.++.++...++++|..
T Consensus 493 RRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls~ 550 (604)
T KOG3863|consen 493 RRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSE 550 (604)
T ss_pred ccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566899999999999999999999999999999888876666666777777777653
No 14
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=96.63 E-value=9.1e-05 Score=71.47 Aligned_cols=77 Identities=22% Similarity=0.185 Sum_probs=70.1
Q ss_pred CCCCCChhHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 024703 129 NDNADDPISKKRRRQLRNRDAAVR---SRERKKMYVKDLEMKSRYLE-SECRKLGRLLHCVLAENQSLRFSLQKGNAYGA 204 (264)
Q Consensus 129 e~d~dd~eeKR~rRllRNReSAqr---SRqRKKeYVeeLE~KVk~LE-~EN~~L~~ql~~L~~EN~~LRqqLq~~~~~g~ 204 (264)
..-...++.|+..|..||+.+|.+ ||.||+.|...|..+++.|+ ..+..|..+++.|..|+++|...+..+...|.
T Consensus 145 ~~~~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l~~~l~~h~~~~~ 224 (395)
T KOG1414|consen 145 SVLTPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHLEKELNTHRPPCS 224 (395)
T ss_pred CCCCCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHHHHHHhccCCCcc
Confidence 344567788999999999999999 99999999999999999999 99999999999999999999999998887764
Q ss_pred c
Q 024703 205 S 205 (264)
Q Consensus 205 ~ 205 (264)
.
T Consensus 225 ~ 225 (395)
T KOG1414|consen 225 G 225 (395)
T ss_pred c
Confidence 4
No 15
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=96.47 E-value=0.00051 Score=66.38 Aligned_cols=78 Identities=33% Similarity=0.352 Sum_probs=58.8
Q ss_pred CCCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCCCccCcc
Q 024703 131 NADDPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLG-RLLHCVLAENQSLRFSLQKGNAYGASLTKQ 209 (264)
Q Consensus 131 d~dd~eeKR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~-~ql~~L~~EN~~LRqqLq~~~~~g~~t~~q 209 (264)
...++.+++++.+.|||.||.+||+|||.++..|+.+...+..++..|. ..+..|..++..+.+-+. ....|..+..+
T Consensus 278 ~~~~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~ 356 (395)
T KOG1414|consen 278 VDEDPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLLLNEVELLRNEVKQLSQALL-THKDCSSTAPQ 356 (395)
T ss_pred cCCCchhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccccchhhHHHhHHhhhccccc-ccccCCccccc
Confidence 3445566667889999999999999999999999999999999999998 666666666666654222 23445444444
No 16
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=91.76 E-value=0.5 Score=38.76 Aligned_cols=42 Identities=26% Similarity=0.252 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCC
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHC-------VLAENQSLRFSLQKGNA 201 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~-------L~~EN~~LRqqLq~~~~ 201 (264)
.+..||.++..|-.+...|+.++.. |+.||..||.+|.....
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777777766666666666655 55566666777765533
No 17
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=90.72 E-value=0.73 Score=38.18 Aligned_cols=40 Identities=30% Similarity=0.265 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhc
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLH-------CVLAENQSLRFSLQKG 199 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~-------~L~~EN~~LRqqLq~~ 199 (264)
.+..||.++..+-.+..+|+.++. .|+.||..||.+|...
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355677777666666666665554 5556666677777754
No 18
>PRK10884 SH3 domain-containing protein; Provisional
Probab=89.41 E-value=3.3 Score=37.40 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 158 KMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 158 KeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
++-+..++..+..|+.+|++|++++..+++|+..|+.++..
T Consensus 124 ~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 124 QQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666667777777777777777777777666544
No 19
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=88.60 E-value=1.7 Score=40.23 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 155 ERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 155 qRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
.|=|+.+.+||.+++.+.+++..|+.++..|++.|..|=.++
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKi 130 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKI 130 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333466799999999999999999999999999999996664
No 20
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=87.83 E-value=4.3 Score=36.90 Aligned_cols=43 Identities=28% Similarity=0.183 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhc
Q 024703 157 KKMYVKDLEMKSRYLESECRKLGRLLH---CVLAENQSLRFSLQKG 199 (264)
Q Consensus 157 KKeYVeeLE~KVk~LE~EN~~L~~ql~---~L~~EN~~LRqqLq~~ 199 (264)
.-....+|.++.+.|++|+.+|+.++. .++.||..||..|...
T Consensus 67 ~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~ 112 (276)
T PRK13922 67 SLASLFDLREENEELKKELLELESRLQELEQLEAENARLRELLNLK 112 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 334566788888888888888877665 7889999999998654
No 21
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=87.17 E-value=2.5 Score=34.68 Aligned_cols=35 Identities=14% Similarity=0.049 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRF 194 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRq 194 (264)
-+..|...+..|..||.+|+-..+.|+.....+.+
T Consensus 23 ~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 23 ELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555555555666665555555555444444
No 22
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=87.15 E-value=7.4 Score=32.80 Aligned_cols=59 Identities=22% Similarity=0.104 Sum_probs=55.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 141 RRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 141 rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
.|..|-|.+.---|.=-|+.|..||...+.++.-+..|.++|..|+..+...|.++...
T Consensus 14 ~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~ 72 (134)
T PF08232_consen 14 HRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKL 72 (134)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 47889999999999999999999999999999999999999999999999999998654
No 23
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=87.01 E-value=2.4 Score=32.59 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFS 195 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqq 195 (264)
-+.-|..++..|+.+|..|......|..||..||+.
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344455555555556666666666666667666654
No 24
>PRK00295 hypothetical protein; Provisional
Probab=86.82 E-value=3 Score=31.50 Aligned_cols=41 Identities=15% Similarity=0.172 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhc
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLL-------HCVLAENQSLRFSLQKG 199 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql-------~~L~~EN~~LRqqLq~~ 199 (264)
+.|.+||.|+...+..+..|...+ ..|..+.+.|+.+|...
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 348999999988887777765544 55555566666666544
No 25
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=86.57 E-value=3.7 Score=30.83 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhc
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLL-------HCVLAENQSLRFSLQKG 199 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql-------~~L~~EN~~LRqqLq~~ 199 (264)
++|.+||.|+...+..+.+|...+ ..|..+.+.|+.+|...
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578899999988888777775544 45555555555555543
No 26
>PRK04325 hypothetical protein; Provisional
Probab=85.86 E-value=3.5 Score=31.65 Aligned_cols=41 Identities=15% Similarity=0.175 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhc
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLL-------HCVLAENQSLRFSLQKG 199 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql-------~~L~~EN~~LRqqLq~~ 199 (264)
++|.+||.|+...+..+..|...+ ..|..+.+.|+.+|...
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 458999999998888877775555 44555555555555443
No 27
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=85.64 E-value=4 Score=33.88 Aligned_cols=28 Identities=25% Similarity=0.175 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 158 KMYVKDLEMKSRYLESECRKLGRLLHCV 185 (264)
Q Consensus 158 KeYVeeLE~KVk~LE~EN~~L~~ql~~L 185 (264)
|.+|.+|..+...|+.||..|++++..+
T Consensus 28 K~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 28 KKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555555555555543
No 28
>PF15058 Speriolin_N: Speriolin N terminus
Probab=85.62 E-value=2 Score=39.21 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
+.|-.+++.|-+||.+|+++++ |..||++||.-|...
T Consensus 8 eGlrhqierLv~ENeeLKKlVr-LirEN~eLksaL~ea 44 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLVR-LIRENHELKSALGEA 44 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 4566788888899999999987 668999999987543
No 29
>PRK00736 hypothetical protein; Provisional
Probab=85.59 E-value=3.8 Score=30.97 Aligned_cols=42 Identities=12% Similarity=0.084 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcC
Q 024703 159 MYVKDLEMKSRYLESECRKLGR-------LLHCVLAENQSLRFSLQKGN 200 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~-------ql~~L~~EN~~LRqqLq~~~ 200 (264)
++|.+||.|+...+..+..|.. +|..|..+.+.|+.+|....
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4589999999888877776654 44556666666666665543
No 30
>PRK02119 hypothetical protein; Provisional
Probab=85.59 E-value=3.7 Score=31.49 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcC
Q 024703 158 KMYVKDLEMKSRYLESECRKLGR-------LLHCVLAENQSLRFSLQKGN 200 (264)
Q Consensus 158 KeYVeeLE~KVk~LE~EN~~L~~-------ql~~L~~EN~~LRqqLq~~~ 200 (264)
.+++.+||.|+...+..+..|.. ++..|..+...|+++|....
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 36788999999888877777654 44556666666666665543
No 31
>PRK02793 phi X174 lysis protein; Provisional
Probab=85.55 E-value=3.7 Score=31.33 Aligned_cols=42 Identities=14% Similarity=0.130 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcC
Q 024703 159 MYVKDLEMKSRYLESECRKLGRL-------LHCVLAENQSLRFSLQKGN 200 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~q-------l~~L~~EN~~LRqqLq~~~ 200 (264)
+++.+||.++...+..+..|... +..|..+.+.|+.+|....
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 57889999998888777776544 4555666666666665543
No 32
>PRK04406 hypothetical protein; Provisional
Probab=85.54 E-value=3.6 Score=31.75 Aligned_cols=42 Identities=12% Similarity=0.136 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcC
Q 024703 159 MYVKDLEMKSRYLESECRKLGRL-------LHCVLAENQSLRFSLQKGN 200 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~q-------l~~L~~EN~~LRqqLq~~~ 200 (264)
+++.+||.++...+..+..|... +..|..+.+.|+++|....
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 57889999988888777776544 4556666666666665443
No 33
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=85.47 E-value=11 Score=32.48 Aligned_cols=62 Identities=24% Similarity=0.262 Sum_probs=52.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 138 KR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
+.......|++.+-+--.-+|+.+..|+.++..+..+.++|...+..+..|+..|-+.|+..
T Consensus 31 reLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~ 92 (140)
T PF10473_consen 31 RELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKK 92 (140)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345677888888888889999999999999999999999999999999999998887654
No 34
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=84.22 E-value=3 Score=30.61 Aligned_cols=43 Identities=21% Similarity=0.176 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 157 KKMYVKDLEMKSRYLES----ECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 157 KKeYVeeLE~KVk~LE~----EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
+...+.+||.+++.-.. ........|..|..||..||.+|...
T Consensus 2 w~~Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 2 WLLRLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred HHHHHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888888766331 23567889999999999999998654
No 35
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.21 E-value=3.1 Score=29.36 Aligned_cols=37 Identities=24% Similarity=0.228 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 163 DLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 163 eLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
.||.....|.+....|......|..||..|+.++...
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L 38 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQEL 38 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888888888888888888887654
No 36
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=83.94 E-value=5 Score=30.61 Aligned_cols=38 Identities=24% Similarity=0.053 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
|+.|=..+..|..+|..|..++..+..|+..|+.+...
T Consensus 9 le~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~ 46 (65)
T TIGR02449 9 VEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQ 46 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566778889999999999999999999887654
No 37
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=83.90 E-value=8.8 Score=34.99 Aligned_cols=58 Identities=19% Similarity=0.217 Sum_probs=45.0
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 136 ISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 136 eeKR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
-.+|.||....+.++-.-+-+ -|.+...+++..-.|+..|+...+.|+.+|+.||..+
T Consensus 21 l~~rLR~~E~ek~~~m~~~g~---lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 21 LVRRLRRAEAEKMSLMVEHGR---LMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777766554 5667777888878888999999999999999998654
No 38
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=83.54 E-value=3.1 Score=38.85 Aligned_cols=38 Identities=29% Similarity=0.249 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhc
Q 024703 162 KDLEMKSRYLESECRKLGRLLH----CVLAENQSLRFSLQKG 199 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L~~ql~----~L~~EN~~LRqqLq~~ 199 (264)
.+|.++.++|++++.+|+.+++ .++.||.+||+.|...
T Consensus 69 ~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 69 NNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3456667777777666543333 4889999999998654
No 39
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=82.09 E-value=5.7 Score=41.89 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLRF 194 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRq 194 (264)
.+||.+++.|+.+.+..++++..++.|.+.||.
T Consensus 548 ~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 548 RQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666655555555555555555555544
No 40
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=81.82 E-value=3.6 Score=31.05 Aligned_cols=30 Identities=17% Similarity=0.121 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 167 KSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 167 KVk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
.|..|..++..|..++..|+.||..||+..
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 466677788888888888899999999885
No 41
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=80.78 E-value=4.1 Score=34.23 Aligned_cols=34 Identities=32% Similarity=0.350 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLR 193 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LR 193 (264)
.|.+||.++-.+-++...|++.+..+..||..||
T Consensus 9 ~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~ 42 (114)
T COG4467 9 QVDNLEEQLGVLLAELGGLKQHLGSLVEENTALR 42 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4678888888888888777777766665555543
No 42
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.16 E-value=6.4 Score=31.03 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFS 195 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqq 195 (264)
--|++|..|...|+++.+.++.....|..||..|++.
T Consensus 25 mEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e 61 (79)
T COG3074 25 MEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEE 61 (79)
T ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666677777888888888765
No 43
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=79.34 E-value=3.2 Score=35.07 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024703 175 CRKLGRLLHCVLAENQSLRFSLQKGNA 201 (264)
Q Consensus 175 N~~L~~ql~~L~~EN~~LRqqLq~~~~ 201 (264)
..+|..+++.|+.||..||++|....+
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~~~ 31 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQSVG 31 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 356778888889999999999987654
No 44
>PRK00846 hypothetical protein; Provisional
Probab=78.76 E-value=9.2 Score=30.03 Aligned_cols=44 Identities=18% Similarity=0.094 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhcC
Q 024703 157 KKMYVKDLEMKSRYLESECRKLGRLL-------HCVLAENQSLRFSLQKGN 200 (264)
Q Consensus 157 KKeYVeeLE~KVk~LE~EN~~L~~ql-------~~L~~EN~~LRqqLq~~~ 200 (264)
-.+++.+||.++...+..+..|...+ ..|..+.+.|+.+|....
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34778899999887777666665444 455555555566665544
No 45
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=78.57 E-value=25 Score=33.56 Aligned_cols=72 Identities=17% Similarity=0.276 Sum_probs=33.7
Q ss_pred CCCCCCCCCChhHHHH-H-HH-HHhHHHHHHHHHHHHHH-HHHHHHHHHHHH-------H-------HHHHHHHHHHHHH
Q 024703 125 NDTDNDNADDPISKKR-R-RQ-LRNRDAAVRSRERKKMY-VKDLEMKSRYLE-------S-------ECRKLGRLLHCVL 186 (264)
Q Consensus 125 ~~~ee~d~dd~eeKR~-r-Rl-lRNReSAqrSRqRKKeY-VeeLE~KVk~LE-------~-------EN~~L~~ql~~L~ 186 (264)
.--+....+++..+|+ + |. ..+-.--++.|.-+-+| |.+|+.+.+.|. . +|++|...+..+.
T Consensus 59 ~RL~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~ 138 (292)
T KOG4005|consen 59 RRLDHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLR 138 (292)
T ss_pred HhhcccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3445566667766665 2 32 12222223334444444 456665544333 2 2344445555555
Q ss_pred HHHHHHHHHH
Q 024703 187 AENQSLRFSL 196 (264)
Q Consensus 187 ~EN~~LRqqL 196 (264)
.|...|+++.
T Consensus 139 ~~l~~~~~~~ 148 (292)
T KOG4005|consen 139 QELAELKQQQ 148 (292)
T ss_pred HHHHhhHHHH
Confidence 5555555554
No 46
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=78.49 E-value=9.7 Score=29.28 Aligned_cols=37 Identities=24% Similarity=0.232 Sum_probs=17.8
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 161 VKDLEMKSRY-------LESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 161 VeeLE~KVk~-------LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
++.||.|+.. |+.++.+|+++...+..+|..|+....
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~ 49 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENE 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4556666554 333444444444444444555554443
No 47
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=78.13 E-value=5.8 Score=41.31 Aligned_cols=63 Identities=16% Similarity=0.111 Sum_probs=45.7
Q ss_pred CChhHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 133 DDPISKKRRRQLRNRDAA---VRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFS 195 (264)
Q Consensus 133 dd~eeKR~rRllRNReSA---qrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqq 195 (264)
-.+.+|..|-.+.--.|- +..-.--+..++.|+..+++|..||..|++++..+..||+.||--
T Consensus 280 ~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kvp 345 (655)
T KOG4343|consen 280 LKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKVP 345 (655)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccccC
Confidence 344444444333333333 333345668899999999999999999999999999999998754
No 48
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=77.88 E-value=23 Score=30.97 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 169 RYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 169 k~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
..++++.+.|..++..|+.+|..|...+...
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~ 115 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLKNL 115 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4567788999999999999999998777653
No 49
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=77.82 E-value=29 Score=31.05 Aligned_cols=59 Identities=24% Similarity=0.251 Sum_probs=44.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 138 KR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
...++.+++-+.-+.+=..-|..+..++.+++.|+-++..|..++..+..|-..|..+.
T Consensus 72 ~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf 130 (201)
T PF13851_consen 72 EELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKF 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777777788888888888888888888888888888877776543
No 50
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=77.57 E-value=6.3 Score=33.18 Aligned_cols=40 Identities=20% Similarity=0.036 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
+.+-.|=.++..|.+....|-+....|+-||..||.+|..
T Consensus 15 ~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 15 EQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 5667777888888888999999999999999999999976
No 51
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=77.36 E-value=28 Score=26.17 Aligned_cols=38 Identities=24% Similarity=0.141 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 157 KKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRF 194 (264)
Q Consensus 157 KKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRq 194 (264)
=|.-...++.+++..+..|..|...|..|..+...+|.
T Consensus 23 vk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 23 VKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444567777777888888888888887777776664
No 52
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=77.26 E-value=6 Score=33.48 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 167 KSRYLESECRKLGRLLHCVLAENQSLR 193 (264)
Q Consensus 167 KVk~LE~EN~~L~~ql~~L~~EN~~LR 193 (264)
+|..|..++.+|.+++..|+.||.-||
T Consensus 68 EVe~Lk~qI~eL~er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 68 EVEVLKEQIRELEERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444445555554
No 53
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=77.17 E-value=13 Score=34.62 Aligned_cols=45 Identities=18% Similarity=0.246 Sum_probs=31.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 143 QLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLA 187 (264)
Q Consensus 143 llRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~ 187 (264)
+.|-|.+++.--..-+..+..||.....|..++.+|+.++..|..
T Consensus 206 ~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~ 250 (269)
T KOG3119|consen 206 VRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRR 250 (269)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666677777777777777777777777766654
No 54
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=76.74 E-value=6.7 Score=29.95 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 170 YLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 170 ~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
.|+..+.+|-...+.|..||..||+++..
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~ 32 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKT 32 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455556666666777777777643
No 55
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=76.21 E-value=12 Score=33.29 Aligned_cols=39 Identities=26% Similarity=0.235 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 158 KMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 158 KeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
+..+..|..+++.|+.++..|.+++..+..+-.+|-+.+
T Consensus 110 ~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im 148 (161)
T TIGR02894 110 KNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIM 148 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555544444443
No 56
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=75.56 E-value=9 Score=27.88 Aligned_cols=29 Identities=14% Similarity=0.161 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 157 KKMYVKDLEMKSRYLESECRKLGRLLHCV 185 (264)
Q Consensus 157 KKeYVeeLE~KVk~LE~EN~~L~~ql~~L 185 (264)
.++.+..|+.++..++.+|..|+.++..+
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556667777777777777777666666
No 57
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=74.47 E-value=34 Score=30.91 Aligned_cols=46 Identities=20% Similarity=0.125 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 154 RERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 154 RqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
++.-++.+..|+.++..|+..|.+|+..+.....+...|.+++...
T Consensus 51 ~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 51 KQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666677777777777777777777777777777776554
No 58
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=74.14 E-value=11 Score=36.24 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
.|+=.+|...+.+.-|+..|..|+..|+..|..+|++|..
T Consensus 64 ~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~ 103 (389)
T PF06216_consen 64 DYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIRE 103 (389)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888899999999999999999999988854
No 59
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=73.49 E-value=12 Score=27.87 Aligned_cols=37 Identities=11% Similarity=0.142 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
+.+||.++..++.....++.+++.+..+...+.+-++
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777776666666666666666666555555543
No 60
>PRK14127 cell division protein GpsB; Provisional
Probab=72.93 E-value=18 Score=30.08 Aligned_cols=41 Identities=15% Similarity=0.157 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
+|++..-.....|..++.+|+.++..|..+...++.++...
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 56777777777888888889888888888888888887643
No 61
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=72.81 E-value=11 Score=34.87 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 024703 155 ERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (264)
Q Consensus 155 qRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~ 200 (264)
++|+.+++.++.++..|+.+...++.....|.+||+.|+.++...+
T Consensus 168 ~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~~ 213 (216)
T KOG1962|consen 168 EKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIESGG 213 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhccC
Confidence 3466778888999999999999999999999999999999987543
No 62
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=72.79 E-value=15 Score=29.24 Aligned_cols=29 Identities=17% Similarity=0.139 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 024703 168 SRYLESECRKLGRLLH-------CVLAENQSLRFSL 196 (264)
Q Consensus 168 Vk~LE~EN~~L~~ql~-------~L~~EN~~LRqqL 196 (264)
+..|..+|..|.+.++ .|..||..||+..
T Consensus 27 ieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~ 62 (79)
T PRK15422 27 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ 62 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3334444444444433 3666777777654
No 63
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=71.08 E-value=7.4 Score=30.91 Aligned_cols=31 Identities=23% Similarity=0.159 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 157 KKMYVKDLEMKSRYLESECRKLGRLLHCVLA 187 (264)
Q Consensus 157 KKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~ 187 (264)
|+.+++.|..+++.++.+|..|..+|..++.
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4678888999999999999998888876654
No 64
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=70.95 E-value=21 Score=34.54 Aligned_cols=35 Identities=23% Similarity=0.182 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024703 167 KSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNA 201 (264)
Q Consensus 167 KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~~ 201 (264)
++..+...-..+++++.+++.||.-|||+|--...
T Consensus 208 kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~ 242 (305)
T PF14915_consen 208 KVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHN 242 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666667899999999999999999975543
No 65
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=70.89 E-value=10 Score=30.73 Aligned_cols=33 Identities=12% Similarity=-0.032 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 155 ERKKMYVKDLEMKSRYLESECRKLGRLLHCVLA 187 (264)
Q Consensus 155 qRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~ 187 (264)
.+.++.+..++.+++.++++|.+|+.++..|..
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 445567778888888888888888888887765
No 66
>PRK10884 SH3 domain-containing protein; Provisional
Probab=70.77 E-value=23 Score=32.01 Aligned_cols=41 Identities=5% Similarity=0.041 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 157 KKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 157 KKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
.+..+.+|+.+.+.|..++..++.++..+.++|..++....
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556667777777777777777777777777777775543
No 67
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=70.67 E-value=9.7 Score=34.37 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=26.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVL 186 (264)
Q Consensus 138 KR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~ 186 (264)
.|.+|..+++ -+..+..+.+|+.++..|+.+..+++..+.+|-
T Consensus 91 ~R~~~~e~~k------ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~ 133 (181)
T KOG3335|consen 91 WRQARKERKK------EEKRKQEIMELRLKVEKLENAIAELTKFFSQLH 133 (181)
T ss_pred HHhhhcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555 344456666777777777776666666666554
No 68
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=70.43 E-value=23 Score=29.97 Aligned_cols=63 Identities=24% Similarity=0.266 Sum_probs=46.1
Q ss_pred CCCCCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 129 NDNADDPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 129 e~d~dd~eeKR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
..++|.+.-|...-++ -+..|..-+++|+.++..|+-+...|+++...++.+-..|+..|+..
T Consensus 48 ~l~eD~~vYk~VG~ll--------vk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 48 KLDEDAPVYKKVGNLL--------VKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred cCCcccHHHHHhhhHH--------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777765332 22346677788888888888888888888888888888888888754
No 69
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=70.42 E-value=54 Score=29.15 Aligned_cols=10 Identities=10% Similarity=0.149 Sum_probs=4.0
Q ss_pred cccccccccc
Q 024703 251 GIVFNALNFG 260 (264)
Q Consensus 251 ~~~~n~~~~~ 260 (264)
+.|+-..-.|
T Consensus 218 ~Lpy~i~~~g 227 (302)
T PF10186_consen 218 PLPYPITPSG 227 (302)
T ss_pred CCCCCcccCc
Confidence 3344444333
No 70
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=70.37 E-value=32 Score=35.17 Aligned_cols=36 Identities=8% Similarity=0.083 Sum_probs=26.9
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 162 KDLEMKSRYLE-------SECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 162 eeLE~KVk~LE-------~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
.+||.++..|+ ++...++++|+.+..||+.|+.++.
T Consensus 79 sELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 79 AQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44555555544 5556788899999999999999984
No 71
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=69.70 E-value=18 Score=26.32 Aligned_cols=33 Identities=18% Similarity=0.234 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 167 KSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 167 KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
+...+.++..+|+.++..+..+|..|++++...
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666677777777777777777777655
No 72
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=69.49 E-value=24 Score=28.71 Aligned_cols=42 Identities=24% Similarity=0.177 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 155 ERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 155 qRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
+.=...+..|+.+++.+..++.+|+..++...++...||..+
T Consensus 76 ~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 76 EYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333344677888888888888888888888888888887654
No 73
>PF15556 Zwint: ZW10 interactor
Probab=69.48 E-value=51 Score=30.91 Aligned_cols=11 Identities=18% Similarity=0.516 Sum_probs=7.5
Q ss_pred cHHHHHhhhhh
Q 024703 65 SLDDFFADVFV 75 (264)
Q Consensus 65 ~~~~f~~~~~~ 75 (264)
-|-+||-++|.
T Consensus 30 QVvdFLqnFLa 40 (252)
T PF15556_consen 30 QVVDFLQNFLA 40 (252)
T ss_pred HHHHHHHHHHh
Confidence 34578777766
No 74
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=68.94 E-value=6 Score=27.92 Aligned_cols=30 Identities=23% Similarity=0.254 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 167 KSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 167 KVk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
....+...+..|...+..|..||..||.+.
T Consensus 15 ~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 15 RNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ---------------HHHHHHHHHHHHHHH
T ss_pred HhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 334445556666666667777777777664
No 75
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=68.94 E-value=79 Score=27.63 Aligned_cols=28 Identities=21% Similarity=0.143 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 171 LESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 171 LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
|.-++..+..++..|..||..|-++++.
T Consensus 156 L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 156 LQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334555677888899999999888754
No 76
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=68.73 E-value=44 Score=30.88 Aligned_cols=42 Identities=10% Similarity=0.137 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 156 RKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 156 RKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
--...|+.|...|..|..++.+++.+++++......|-+.|-
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld 99 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQID 99 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666666666666666666555554443
No 77
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=68.53 E-value=21 Score=28.59 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
.++..|..-+-.||+.|..|..+++.|...|+..|.+++..
T Consensus 33 s~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~ 73 (83)
T PF03670_consen 33 SMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQ 73 (83)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888899999999999999999999998754
No 78
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=68.40 E-value=15 Score=38.74 Aligned_cols=17 Identities=12% Similarity=0.092 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q 024703 182 LHCVLAENQSLRFSLQK 198 (264)
Q Consensus 182 l~~L~~EN~~LRqqLq~ 198 (264)
+..+..++..|+..|+.
T Consensus 476 i~~~~~~I~~L~~~L~e 492 (652)
T COG2433 476 IRARDRRIERLEKELEE 492 (652)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455556666666543
No 79
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=68.05 E-value=25 Score=26.29 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVL 186 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~ 186 (264)
..+..++.+...++.+|.+|+.++..|.
T Consensus 31 ~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 31 NELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4445555555555555555555555444
No 80
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=67.64 E-value=9.8 Score=28.77 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 158 KMYVKDLEMKSRYLESECRKLGRL 181 (264)
Q Consensus 158 KeYVeeLE~KVk~LE~EN~~L~~q 181 (264)
|..|.+|+.++.+|+.||..|+..
T Consensus 20 K~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 20 KEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355667777777777777766643
No 81
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=67.25 E-value=30 Score=30.91 Aligned_cols=20 Identities=25% Similarity=0.112 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024703 149 AAVRSRERKKMYVKDLEMKS 168 (264)
Q Consensus 149 SAqrSRqRKKeYVeeLE~KV 168 (264)
+-+..+...+.+.+.||.++
T Consensus 100 ~lk~~~~~~~e~~k~le~~~ 119 (190)
T PF05266_consen 100 SLKDDQEKLLEERKKLEKKI 119 (190)
T ss_pred HHHHhHHHHHHHHHHHHHHH
Confidence 33333333334444444433
No 82
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=67.00 E-value=24 Score=28.65 Aligned_cols=30 Identities=17% Similarity=0.065 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 163 DLEMKSRYLESECRKLGRLLHCVLAENQSL 192 (264)
Q Consensus 163 eLE~KVk~LE~EN~~L~~ql~~L~~EN~~L 192 (264)
.++.++..++++|.+|+.+.+.|..|...|
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444444444444
No 83
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=66.68 E-value=12 Score=27.81 Aligned_cols=32 Identities=25% Similarity=0.253 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 168 SRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 168 Vk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
+..+|.+..++...+..++.||+.||..+...
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i 33 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKI 33 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666544
No 84
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=66.19 E-value=40 Score=29.99 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 163 DLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 163 eLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
.|+...+.|+.++.+|+.++..|..||..|.+++..
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~ 136 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRLST 136 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666777777777777788888887777654
No 85
>PRK11637 AmiB activator; Provisional
Probab=65.68 E-value=61 Score=31.49 Aligned_cols=12 Identities=17% Similarity=-0.025 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRY 170 (264)
Q Consensus 159 eYVeeLE~KVk~ 170 (264)
..+..|+.++..
T Consensus 75 ~~l~~l~~qi~~ 86 (428)
T PRK11637 75 AQLKKQEEAISQ 86 (428)
T ss_pred HHHHHHHHHHHH
Confidence 334444443333
No 86
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=65.56 E-value=49 Score=33.41 Aligned_cols=59 Identities=19% Similarity=0.152 Sum_probs=33.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 138 KR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
++++...++=+.-.++....+.....||..++.++.++.++..++.....++..+++.+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I 96 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQI 96 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence 34444444444444444444555566777777777777666666665555555555444
No 87
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=65.53 E-value=38 Score=30.39 Aligned_cols=37 Identities=11% Similarity=0.170 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 151 VRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLA 187 (264)
Q Consensus 151 qrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~ 187 (264)
+..=++|++|+++-..+.+.++.+..+|+.+++..+.
T Consensus 138 ~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~~ 174 (176)
T PF12999_consen 138 KEGLKIRQELIEEAKKKREELEKKLEELEKEIQAAKQ 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333456678877777777777777777776665544
No 88
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=64.94 E-value=42 Score=26.49 Aligned_cols=41 Identities=12% Similarity=0.043 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
..+..|...+..|-......+.....|..||+.|.+-+...
T Consensus 23 ~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 23 QEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666677777778888888776554
No 89
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=64.92 E-value=15 Score=36.83 Aligned_cols=66 Identities=24% Similarity=0.258 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-cCccchhhHhhhccccccccc
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGAS-LTKQESAVLLLGMIHELSFPH 226 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~~~g~~-t~~qesAvL~~~sL~~~s~pw 226 (264)
++.+|.+-+.|..|+..|++-+..+.+..+.||.-++..++..++ -++.++-+||..-++..|||-
T Consensus 261 l~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~pNeqLk~pvtvskgtateplmlmsvfcqtesfpa 327 (561)
T KOG1103|consen 261 LEREEKRQKMLKEEMESLKEIVKDLEADHQHLRPNEQLKGPVTVSKGTATEPLMLMSVFCQTESFPA 327 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCccccccCceeeccccccchhHHhhhhhhcccCch
Confidence 334444555555556666666666666666666555555544444 334456666655566666653
No 90
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=64.91 E-value=23 Score=33.76 Aligned_cols=41 Identities=20% Similarity=0.193 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccc
Q 024703 170 YLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASLTKQE 210 (264)
Q Consensus 170 ~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~~~g~~t~~qe 210 (264)
.+-.+..+|+++++.|+.+...||+.+.+..-.-+-|..++
T Consensus 218 ~~~ae~seLq~r~~~l~~~L~~L~~e~~r~~l~~~Dm~G~~ 258 (289)
T COG4985 218 HYVAEKSELQKRLAQLQTELDALRAELERQFLYLVDMQGET 258 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhceEEEEccCCCE
Confidence 35567788999999999999999998866543333343333
No 91
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=64.69 E-value=82 Score=26.20 Aligned_cols=37 Identities=14% Similarity=0.236 Sum_probs=16.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 141 RRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRK 177 (264)
Q Consensus 141 rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~ 177 (264)
.|=+..|+.......++..-+..|+..+..|+.++..
T Consensus 48 ~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~ 84 (151)
T PF11559_consen 48 DRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEE 84 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433333
No 92
>PHA03155 hypothetical protein; Provisional
Probab=64.12 E-value=13 Score=31.44 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024703 176 RKLGRLLHCVLAENQSLRFSLQKGNA 201 (264)
Q Consensus 176 ~~L~~ql~~L~~EN~~LRqqLq~~~~ 201 (264)
.+|..+++.|..||..||++|..++.
T Consensus 11 EeLaaeL~kL~~ENK~LKkkl~~~~~ 36 (115)
T PHA03155 11 EELEKELQKLKIENKALKKKLLQHGN 36 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 46677777888999999999876543
No 93
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=63.76 E-value=62 Score=25.79 Aligned_cols=22 Identities=27% Similarity=0.187 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024703 175 CRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 175 N~~L~~ql~~L~~EN~~LRqqL 196 (264)
+..|..++..|..+...+...+
T Consensus 83 i~~l~~~l~~l~~~~~k~e~~l 104 (126)
T PF13863_consen 83 IKKLKAELEELKSEISKLEEKL 104 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444333
No 94
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=63.61 E-value=8.2 Score=27.23 Aligned_cols=44 Identities=25% Similarity=0.297 Sum_probs=13.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 139 KRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLH 183 (264)
Q Consensus 139 R~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~ 183 (264)
|+++...||+=|+..-... ..+.+||.++..|-.||..|+.++.
T Consensus 2 k~k~~~qn~~laK~Ns~l~-~ki~~le~~~s~L~~en~~lR~~~~ 45 (46)
T PF07558_consen 2 KEKYSRQNRELAKRNSALS-IKIQELENEVSKLLNENVNLRELVL 45 (46)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhHhHHHH-hHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 4566777888877666554 6788999999999999988887653
No 95
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=63.42 E-value=31 Score=29.32 Aligned_cols=45 Identities=27% Similarity=0.193 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 024703 161 VKDLEMKSRYLESE--CRKLGRLLHCVLAENQSLRFSLQKGNAYGAS 205 (264)
Q Consensus 161 VeeLE~KVk~LE~E--N~~L~~ql~~L~~EN~~LRqqLq~~~~~g~~ 205 (264)
+..|+.+++.|..+ +.+|...+..|..|+..|..+|.........
T Consensus 95 ~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~ 141 (169)
T PF07106_consen 95 VKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKP 141 (169)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34444444444443 4567888999999999999999876654444
No 96
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=63.28 E-value=52 Score=30.12 Aligned_cols=38 Identities=11% Similarity=0.007 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
.-+..+|..|+++.++|..+.+.|..||..||..+...
T Consensus 104 ~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKElcl~L 141 (195)
T PF10226_consen 104 SVMRQEVAQYQQKLKELEDKQEELIRENLELKELCLYL 141 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34556789999999999999999999999999987543
No 97
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=62.99 E-value=22 Score=33.44 Aligned_cols=41 Identities=24% Similarity=0.243 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhc
Q 024703 159 MYVKDLEMKSRYLESECR---KLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~---~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
.+..++..+.+.|..++. ++..++..|++||++||..|...
T Consensus 66 ~~~~~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~~ 109 (284)
T COG1792 66 KSLKDLALENEELKKELAELEQLLEEVESLEEENKRLKELLDFK 109 (284)
T ss_pred HHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 444555555556665554 44567788999999999998643
No 98
>PHA03162 hypothetical protein; Provisional
Probab=62.87 E-value=11 Score=32.52 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 176 RKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 176 ~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
.+|..+|+.|+.||..||++|...
T Consensus 16 EeLaaeL~kLqmENK~LKkkl~~~ 39 (135)
T PHA03162 16 EDLAAEIAKLQLENKALKKKIKEG 39 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456677777888899999998654
No 99
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=62.51 E-value=22 Score=27.96 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 170 YLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 170 ~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
.|..++..|+.+...+..+|..|++++.
T Consensus 72 ~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 72 LLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777888888888888888888763
No 100
>PRK11637 AmiB activator; Provisional
Probab=62.42 E-value=75 Score=30.92 Aligned_cols=23 Identities=9% Similarity=0.073 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024703 168 SRYLESECRKLGRLLHCVLAENQ 190 (264)
Q Consensus 168 Vk~LE~EN~~L~~ql~~L~~EN~ 190 (264)
++.++.+...++.++..++.+..
T Consensus 98 i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 98 LNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444433333
No 101
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=61.64 E-value=27 Score=25.94 Aligned_cols=23 Identities=22% Similarity=0.185 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 024703 176 RKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 176 ~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
..|..+...|+.+|..||..|++
T Consensus 36 ~~l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 36 AALIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666778888999999988864
No 102
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=61.44 E-value=59 Score=23.48 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAEN 189 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN 189 (264)
..+..|+.+...|..++..|...+..|..+|
T Consensus 33 ~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 33 EKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4556677777777777777777777776666
No 103
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=61.33 E-value=48 Score=26.75 Aligned_cols=40 Identities=25% Similarity=0.198 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 158 KMYVKDLEMKSRYL--ESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 158 KeYVeeLE~KVk~L--E~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
..++..+|.+++.| ..+..+|+-.+..+.-+...|+.++.
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~ 89 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQ 89 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34566666666666 55566666666666666666666654
No 104
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=61.17 E-value=50 Score=25.17 Aligned_cols=41 Identities=24% Similarity=0.317 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 158 KMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 158 KeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
...+..|+.+...++.+...|..++..+..+-..++..|..
T Consensus 61 ~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 61 EEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888888888888888888888888888764
No 105
>PRK02119 hypothetical protein; Provisional
Probab=60.64 E-value=66 Score=24.63 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024703 162 KDLEMKSRYLESECRKLGRLLH 183 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L~~ql~ 183 (264)
..+|.++..||....-+...+.
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie 26 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLE 26 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555544444443333
No 106
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=60.41 E-value=66 Score=34.20 Aligned_cols=29 Identities=34% Similarity=0.327 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 167 KSRYLESECRKLGRLLHCVLAENQSLRFS 195 (264)
Q Consensus 167 KVk~LE~EN~~L~~ql~~L~~EN~~LRqq 195 (264)
+.++||.|+.+|+..+.....++..|...
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~e~~ 574 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRELESE 574 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333
No 107
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=60.31 E-value=33 Score=29.12 Aligned_cols=27 Identities=33% Similarity=0.346 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 155 ERKKMYVKDLEMKSRYLESECRKLGRL 181 (264)
Q Consensus 155 qRKKeYVeeLE~KVk~LE~EN~~L~~q 181 (264)
+-=|+.|.+|+.++..|++||.-|+.-
T Consensus 70 e~Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 70 EVLKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444577788888888888888877654
No 108
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=60.25 E-value=12 Score=33.82 Aligned_cols=42 Identities=19% Similarity=0.087 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 155 ERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 155 qRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
+..+..++.||.++.++++.+.+|..++.....|-+.+++..
T Consensus 109 ~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~~~el~~~~q~~ 150 (181)
T KOG3335|consen 109 MELRLKVEKLENAIAELTKFFSQLHSKLNKPESELKPIRQAP 150 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccCC
Confidence 344566788888999999999999888887777777666654
No 109
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=60.00 E-value=58 Score=28.30 Aligned_cols=35 Identities=26% Similarity=0.177 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024703 169 RYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYG 203 (264)
Q Consensus 169 k~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~~~g 203 (264)
.+||.++..|+.+|.+|..||..++..+-....-|
T Consensus 77 ~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~ 111 (135)
T KOG4196|consen 77 HELEKEKAELQQQVEKLKEENSRLRRELDAYKSKY 111 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999987654433
No 110
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=59.78 E-value=33 Score=25.63 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHC 184 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~ 184 (264)
|+.|...|+.|..+..+|...+..
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~ 28 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNA 28 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443333333333
No 111
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=59.74 E-value=75 Score=35.57 Aligned_cols=63 Identities=21% Similarity=0.322 Sum_probs=45.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024703 141 RRQLRNRDAAVRSRERKKMYVKDL-----------------EMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYG 203 (264)
Q Consensus 141 rRllRNReSAqrSRqRKKeYVeeL-----------------E~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~~~g 203 (264)
|++.|-|..|+..-.-|-+|..+| |.+...|+.+...|++++..|..+..-||..+...+..+
T Consensus 283 rel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~ 362 (1243)
T KOG0971|consen 283 RELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDG 362 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 355577777777777777776654 335556777777888888889999999999988765444
No 112
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=59.65 E-value=37 Score=27.03 Aligned_cols=40 Identities=20% Similarity=0.116 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
+-++.||.|+++.=..+.-|+..+..|..+|..|.+....
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888876666666666666666666666665443
No 113
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=59.46 E-value=91 Score=27.43 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=34.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVL 186 (264)
Q Consensus 138 KR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~ 186 (264)
+..++|++.|..|+-.=..|-.-..+|-.|++.-+..+.++...|..+.
T Consensus 84 ~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~ela 132 (152)
T PF11500_consen 84 KEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELA 132 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446788888888888777777777777777776666666665555443
No 114
>PRK04406 hypothetical protein; Provisional
Probab=59.21 E-value=71 Score=24.64 Aligned_cols=22 Identities=18% Similarity=0.107 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024703 163 DLEMKSRYLESECRKLGRLLHC 184 (264)
Q Consensus 163 eLE~KVk~LE~EN~~L~~ql~~ 184 (264)
.+|.++..||....-+...+..
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~ 29 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEE 29 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555444444433
No 115
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=58.95 E-value=18 Score=30.64 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 157 KKMYVKDLEMKSRYLESECRKLGRLLHCV 185 (264)
Q Consensus 157 KKeYVeeLE~KVk~LE~EN~~L~~ql~~L 185 (264)
|..-+++|..++..|+-||..|++++..-
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~~ 29 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQS 29 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 34568999999999999999999888643
No 116
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=58.07 E-value=1.1e+02 Score=25.46 Aligned_cols=9 Identities=0% Similarity=0.294 Sum_probs=4.0
Q ss_pred HHHHhhhhh
Q 024703 67 DDFFADVFV 75 (264)
Q Consensus 67 ~~f~~~~~~ 75 (264)
-.||..-|+
T Consensus 4 ~~yiN~~L~ 12 (151)
T PF11559_consen 4 IEYINQQLL 12 (151)
T ss_pred HHHHHHHHH
Confidence 344444444
No 117
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=57.90 E-value=24 Score=36.07 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 172 ESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 172 E~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
+.+..++.++.++|..+-+.|+.+|+..
T Consensus 108 ~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 108 QSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666666666555544
No 118
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=56.78 E-value=1.4e+02 Score=27.04 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCVL 186 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L~ 186 (264)
|.+.|+..+...+++..+|++++..+.
T Consensus 71 ~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 71 YNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444333
No 119
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=56.76 E-value=1e+02 Score=27.64 Aligned_cols=18 Identities=33% Similarity=0.316 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024703 164 LEMKSRYLESECRKLGRL 181 (264)
Q Consensus 164 LE~KVk~LE~EN~~L~~q 181 (264)
+|.++..|+..+.+|+++
T Consensus 129 ~e~~i~~Le~ki~el~~~ 146 (190)
T PF05266_consen 129 LESEIKELEMKILELQRQ 146 (190)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444444
No 120
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=56.58 E-value=1.3e+02 Score=25.71 Aligned_cols=33 Identities=18% Similarity=0.136 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 147 RDAAVRSRERKKMYVKDLEMKSRYLESECRKLG 179 (264)
Q Consensus 147 ReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~ 179 (264)
....+.-++++++.+..++..++.+.++...|.
T Consensus 118 ~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 118 LQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334445555666666666666666655555
No 121
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=56.56 E-value=48 Score=32.68 Aligned_cols=67 Identities=16% Similarity=0.162 Sum_probs=43.7
Q ss_pred HHHHhHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCc
Q 024703 142 RQLRNRDAAVRSRERKK-MY-VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASLTK 208 (264)
Q Consensus 142 RllRNReSAqrSRqRKK-eY-VeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~~~g~~t~~ 208 (264)
|..||..|..--..+|+ +. .+.|-.+++.+..+...|..++..+..+-..+-..|.+.....++.+.
T Consensus 50 ~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~vP~g~ 118 (418)
T TIGR00414 50 QAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHESVPVGK 118 (418)
T ss_pred HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCC
Confidence 44566666655442222 23 567777788888888888888888888877777777766554444443
No 122
>smart00338 BRLZ basic region leucin zipper.
Probab=56.30 E-value=74 Score=22.98 Aligned_cols=17 Identities=35% Similarity=0.380 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024703 178 LGRLLHCVLAENQSLRF 194 (264)
Q Consensus 178 L~~ql~~L~~EN~~LRq 194 (264)
|..+++.|..+|..|+.
T Consensus 31 Le~~~~~L~~en~~L~~ 47 (65)
T smart00338 31 LERKVEQLEAENERLKK 47 (65)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 123
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=56.28 E-value=38 Score=32.78 Aligned_cols=43 Identities=26% Similarity=0.170 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 156 RKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 156 RKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
||.+-.......+..|..++..|+.+++.+..||..|+++|..
T Consensus 224 ~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ 266 (306)
T PF04849_consen 224 RKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQA 266 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3334344444455566667777788888888888888888864
No 124
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.13 E-value=40 Score=26.66 Aligned_cols=38 Identities=21% Similarity=0.133 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
-++.||.|+++--..+.-|+-.+..|..+|..|.+..+
T Consensus 5 v~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q 42 (79)
T COG3074 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 45667777766554555555555555555555544443
No 125
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=56.13 E-value=37 Score=27.25 Aligned_cols=38 Identities=21% Similarity=0.194 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcCCCC
Q 024703 166 MKSRYLESECRKLGRLL------HCVLAENQSLRFSLQKGNAYG 203 (264)
Q Consensus 166 ~KVk~LE~EN~~L~~ql------~~L~~EN~~LRqqLq~~~~~g 203 (264)
...+.|..|++-|+.++ .....||..||.++......+
T Consensus 24 ~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~ 67 (86)
T PF12711_consen 24 EENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY 67 (86)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466777777777654 467899999999887765544
No 126
>PLN02320 seryl-tRNA synthetase
Probab=56.09 E-value=39 Score=34.64 Aligned_cols=67 Identities=16% Similarity=-0.015 Sum_probs=42.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCc
Q 024703 142 RQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASLTK 208 (264)
Q Consensus 142 RllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~~~g~~t~~ 208 (264)
|-.||..|.+-...+++.-.+.|-.+++.|..+...|..++..+..+-..+-..|.+.....++.+.
T Consensus 113 r~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~h~~VP~G~ 179 (502)
T PLN02320 113 RAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTHPDVPVGG 179 (502)
T ss_pred HHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCC
Confidence 4446666665554334444566767777777788888888777777777777776665544444443
No 127
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=54.84 E-value=63 Score=25.53 Aligned_cols=43 Identities=16% Similarity=0.175 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 157 KKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 157 KKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
+..-+..|+.++..++.+..+|..++..+..+-..|+..|...
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777788888888888888888888888888777643
No 128
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=54.57 E-value=52 Score=25.14 Aligned_cols=40 Identities=28% Similarity=0.306 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
.-|..|-.+++.++.++..|..++..+..+...|+.++..
T Consensus 33 ~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 33 NTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5667777788888888888888888888888888888753
No 129
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=54.52 E-value=62 Score=26.72 Aligned_cols=37 Identities=22% Similarity=0.222 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
...+.+-..|+.++..+..++..|...|.-|=.+|..
T Consensus 94 ~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 94 ASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445566678888888889999999999999888864
No 130
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=54.45 E-value=1.1e+02 Score=29.68 Aligned_cols=55 Identities=18% Similarity=0.154 Sum_probs=38.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 141 RRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFS 195 (264)
Q Consensus 141 rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqq 195 (264)
.+.+.-|+--.....--++|-.+||.++.+++..|..|....+.|..|-..+|.+
T Consensus 27 q~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek 81 (333)
T KOG1853|consen 27 QHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEK 81 (333)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666777888888888888887777776666666666555544
No 131
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=54.21 E-value=95 Score=29.61 Aligned_cols=29 Identities=24% Similarity=0.238 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 168 SRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 168 Vk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
++.|+.+|.+|.+.+..+.-|...||.++
T Consensus 172 lk~le~E~s~LeE~~~~l~~ev~~L~~r~ 200 (290)
T COG4026 172 LKRLEVENSRLEEMLKKLPGEVYDLKKRW 200 (290)
T ss_pred HHHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence 33333344444444444444444444443
No 132
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=53.86 E-value=66 Score=25.97 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024703 177 KLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 177 ~L~~ql~~L~~EN~~LRqqL 196 (264)
+|+.++..+..||..||.+|
T Consensus 53 ~L~~e~~~l~~E~e~L~~~l 72 (87)
T PF12709_consen 53 ELENENKALKRENEQLKKKL 72 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444443
No 133
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=53.69 E-value=1.2e+02 Score=26.95 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=9.7
Q ss_pred HHHHhhhhhcCCCCCC
Q 024703 67 DDFFADVFVDQPSPAS 82 (264)
Q Consensus 67 ~~f~~~~~~d~~~~~~ 82 (264)
++++--|-+|||+-|-
T Consensus 69 ~ELIRQVTi~C~ERGl 84 (189)
T PF10211_consen 69 DELIRQVTIDCPERGL 84 (189)
T ss_pred HHHHHHHHhCcHHHhH
Confidence 4555555578877554
No 134
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=53.38 E-value=70 Score=33.46 Aligned_cols=46 Identities=30% Similarity=0.489 Sum_probs=25.8
Q ss_pred CCCCCCCCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 126 DTDNDNADDPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESEC 175 (264)
Q Consensus 126 ~~ee~d~dd~eeKR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN 175 (264)
.+++++.+.++.|..| +|-|..|-..|+| -+|.+.-+-.++|=+.|
T Consensus 507 S~dedddl~peqkaeR--EkERR~aNNARER--lRVRDINeAfKELGRMC 552 (632)
T KOG3910|consen 507 SSDEDDDLNPEQKAER--EKERRMANNARER--LRVRDINEAFKELGRMC 552 (632)
T ss_pred CcccccccChhhhhhH--HHHHHhhhhhhhh--eehhhHHHHHHHHHHHH
Confidence 4455666666666655 4455566666666 44555555555544443
No 135
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=53.32 E-value=49 Score=28.11 Aligned_cols=33 Identities=24% Similarity=0.166 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 164 LEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 164 LE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
||.+...++.++..|+.+++.+..+...+..+|
T Consensus 26 le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l 58 (143)
T PF12718_consen 26 LEQENEQKEQEITSLQKKNQQLEEELDKLEEQL 58 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444444433
No 136
>PRK09039 hypothetical protein; Validated
Probab=53.06 E-value=1.2e+02 Score=29.13 Aligned_cols=12 Identities=17% Similarity=0.121 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 024703 167 KSRYLESECRKL 178 (264)
Q Consensus 167 KVk~LE~EN~~L 178 (264)
++..|+.++..|
T Consensus 145 qI~aLr~Qla~l 156 (343)
T PRK09039 145 QIAALRRQLAAL 156 (343)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 137
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=52.95 E-value=31 Score=27.18 Aligned_cols=32 Identities=19% Similarity=0.101 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 168 SRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 168 Vk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
+..+..+|.+|+++++.+.+|.+.++...+..
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~~qIk 33 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKREFQIK 33 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 35678899999999999999999998876543
No 138
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=52.81 E-value=56 Score=23.02 Aligned_cols=34 Identities=29% Similarity=0.227 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 164 LEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 164 LE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
|-.....|..++..|....+.|.+|...|+..|+
T Consensus 10 LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 10 LKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444555666666666666666666666666654
No 139
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=52.65 E-value=43 Score=25.16 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHCV 185 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~L 185 (264)
|.+|+.++..|+.|+.+++..+..-
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777776666543
No 140
>PHA03155 hypothetical protein; Provisional
Probab=52.60 E-value=19 Score=30.41 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHC 184 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~ 184 (264)
-+++|+.++..|+-||..|++++.+
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4789999999999999999988843
No 141
>PF14282 FlxA: FlxA-like protein
Probab=52.41 E-value=60 Score=26.22 Aligned_cols=14 Identities=14% Similarity=0.190 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 024703 158 KMYVKDLEMKSRYL 171 (264)
Q Consensus 158 KeYVeeLE~KVk~L 171 (264)
+..++.|..++..|
T Consensus 50 ~~q~q~Lq~QI~~L 63 (106)
T PF14282_consen 50 QQQIQLLQAQIQQL 63 (106)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 142
>PRK00295 hypothetical protein; Provisional
Probab=52.39 E-value=99 Score=23.29 Aligned_cols=34 Identities=6% Similarity=0.056 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLR 193 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LR 193 (264)
-|++|-.-|...++++.+|+++++.|......+.
T Consensus 20 tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 20 TIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555566666667777777777766555544
No 143
>PRK00736 hypothetical protein; Provisional
Probab=52.38 E-value=99 Score=23.29 Aligned_cols=34 Identities=12% Similarity=0.086 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLR 193 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LR 193 (264)
-|++|-.-|...++++..|++++..|......+.
T Consensus 20 tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 20 TIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455555555666666777777777765554443
No 144
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=52.32 E-value=1.8e+02 Score=26.18 Aligned_cols=36 Identities=17% Similarity=0.053 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 163 DLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 163 eLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
.||.+-..+-..|-++...+..|..|...||++...
T Consensus 179 ~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~ 214 (221)
T PF05700_consen 179 YLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAE 214 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555666666666666777666666543
No 145
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=52.15 E-value=1.3e+02 Score=24.74 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 158 KMYVKDLEMKSRYLESECRKLGRLLH 183 (264)
Q Consensus 158 KeYVeeLE~KVk~LE~EN~~L~~ql~ 183 (264)
..-+.+++.++..|..+|.-|..+|.
T Consensus 104 e~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 104 EKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444443
No 146
>PF07767 Nop53: Nop53 (60S ribosomal biogenesis); InterPro: IPR011687 This entry contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60) []. This protein has been found to interact with herpes simplex type 1 regulatory proteins, but its exact role in the life cycle of the virus is not known [].
Probab=52.13 E-value=1.1e+02 Score=29.45 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=14.9
Q ss_pred CCCCCCCCCcHHHHHHhhccCCC
Q 024703 32 PSPDGSVSPWIGDIESMLMNDND 54 (264)
Q Consensus 32 ~~p~~~~~~~~~eie~~lm~d~~ 54 (264)
+.|..|.-|-+.+=..+|....+
T Consensus 181 Ph~G~SYNP~~edhqelL~~a~~ 203 (387)
T PF07767_consen 181 PHPGQSYNPSFEDHQELLAKAVE 203 (387)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHH
Confidence 44555666777777777775544
No 147
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=51.98 E-value=74 Score=29.49 Aligned_cols=54 Identities=15% Similarity=0.061 Sum_probs=46.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 142 RQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFS 195 (264)
Q Consensus 142 RllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqq 195 (264)
-+..-|.+|+.-.+|+++.+..|..-++.--+|-.+.+.+++.|..++..|.++
T Consensus 16 ELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll~~~~~l~~~ 69 (214)
T PF07795_consen 16 ELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLLLEKLSLQQQ 69 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 467889999999999999999999999998889999999999999887666543
No 148
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=51.75 E-value=71 Score=30.49 Aligned_cols=47 Identities=23% Similarity=0.393 Sum_probs=24.4
Q ss_pred cccCCCCC-CCCCCCcHHHHHH-hhccCCC------CCCccCCCcccHHHHHhhh
Q 024703 27 EIFSNPSP-DGSVSPWIGDIES-MLMNDND------DNSELEPNQQSLDDFFADV 73 (264)
Q Consensus 27 ~~~~~~~p-~~~~~~~~~eie~-~lm~d~~------~~~~~~~~~~~~~~f~~~~ 73 (264)
=-|++.|| .|-+--|-.++++ =+|+..+ ++..-......+=.|+..+
T Consensus 31 iCfSneSPleglv~YWe~~~kk~~~~~~~~k~C~iG~g~~k~mtn~t~mk~IeeV 85 (264)
T PF07246_consen 31 ICFSNESPLEGLVYYWEEEMKKRRMMPGFNKKCRIGSGDLKEMTNKTMMKIIEEV 85 (264)
T ss_pred eeecCCCCchHHHHHHHHHHHHhccCCccccCcccCCcchhhcchhhHHHHHHHH
Confidence 34666555 4455667778877 3455543 1122222333344677766
No 149
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=51.73 E-value=70 Score=23.82 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 166 MKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 166 ~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
...+.+..+...++.++..+..||..|+.++...
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777888888887776554
No 150
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=51.57 E-value=68 Score=31.69 Aligned_cols=50 Identities=20% Similarity=0.165 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccc
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASLTKQE 210 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~~~g~~t~~qe 210 (264)
.+.|-.+++.+..+...|..++..+..+-..+-..|.+.....++.+..+
T Consensus 68 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~~vP~g~~~ 117 (425)
T PRK05431 68 AEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHDSVPVGKDE 117 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCC
Confidence 44566677777777777777777777777777777766655555544444
No 151
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=51.55 E-value=37 Score=31.32 Aligned_cols=37 Identities=8% Similarity=-0.040 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
-+-+|..++..|++++.+|+-+++.+..+...++++-
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq 91 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQ 91 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3456777777777777777777777777776665553
No 152
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=51.44 E-value=43 Score=34.31 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 176 RKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 176 ~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
..|..++.+..+||+.|++++...
T Consensus 275 d~LE~rv~~~taeNqeL~kkV~~L 298 (472)
T KOG0709|consen 275 DGLESRVSAFTAENQELQKKVEEL 298 (472)
T ss_pred HHHhhhhhhcccCcHHHHHHHHHH
Confidence 345555555555555555555443
No 153
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=51.26 E-value=84 Score=29.93 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=43.7
Q ss_pred ChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 134 DPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 134 d~eeKR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
.|-.++..+...+-..|+..=+.++..+..++.++..|+.+......+...|..+......+|.+
T Consensus 217 ~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~r 281 (344)
T PF12777_consen 217 EPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLER 281 (344)
T ss_dssp CHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34444445555555555555566777788888888888888777777777777777766666654
No 154
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=51.10 E-value=66 Score=29.03 Aligned_cols=46 Identities=20% Similarity=0.225 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 147 RDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSL 192 (264)
Q Consensus 147 ReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~L 192 (264)
|.++..-|++-+.|-..||.|=+.|...-.=-+++|..|...|..+
T Consensus 122 r~~~~~E~~ka~~la~qLe~ke~el~~~d~fykeql~~le~k~~e~ 167 (187)
T PF05300_consen 122 RASTEQERQKAKQLARQLEEKEAELKKQDAFYKEQLARLEEKNAEF 167 (187)
T ss_pred hhcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566667777888877777777777788888888887765
No 155
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=51.06 E-value=1.5e+02 Score=24.90 Aligned_cols=60 Identities=12% Similarity=0.041 Sum_probs=46.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 137 SKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 137 eKR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
.-+..-+.+-.+....||..=...-+.|+..+..|++++....+++..|+++...++..|
T Consensus 15 ~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 15 QNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566778888888888776666677888999999888888888888888877777665
No 156
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=50.91 E-value=1.6e+02 Score=33.04 Aligned_cols=63 Identities=27% Similarity=0.383 Sum_probs=44.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHhc
Q 024703 137 SKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLH------------CVLAENQSLRFSLQKG 199 (264)
Q Consensus 137 eKR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~------------~L~~EN~~LRqqLq~~ 199 (264)
...+-|=+.||.-.+.+++|..+|-++.|.|-.++.+++..|.+.+. .+.+|-..|+.++...
T Consensus 1027 ~~~r~~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kk 1101 (1189)
T KOG1265|consen 1027 NAGRVRELVNRQTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDKK 1101 (1189)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667888888999999999999999888888888777654332 2445556666666543
No 157
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=50.66 E-value=91 Score=25.31 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFS 195 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqq 195 (264)
+.++.|+.+...++++..+|+..+..+.........+
T Consensus 80 ~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~~~~ 116 (118)
T cd04776 80 KMLEKIEKRRAELEQQRRDIDAALAELDAAEERCRER 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666665555544444
No 158
>PRK11546 zraP zinc resistance protein; Provisional
Probab=50.55 E-value=1.3e+02 Score=26.18 Aligned_cols=35 Identities=17% Similarity=0.099 Sum_probs=24.2
Q ss_pred CCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 024703 132 ADDPISKKRRRQLRNRDAAVRSRERKKMYVKDLEM 166 (264)
Q Consensus 132 ~dd~eeKR~rRllRNReSAqrSRqRKKeYVeeLE~ 166 (264)
...+|.......+.++=.++-...|.+-|.+..|-
T Consensus 43 ~LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~EL 77 (143)
T PRK11546 43 PLTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEY 77 (143)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677777777777777777777665553
No 159
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=50.28 E-value=1.5e+02 Score=24.64 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=33.2
Q ss_pred HhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 145 RNRDAAVRSRERKKM-YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRF 194 (264)
Q Consensus 145 RNReSAqrSRqRKKe-YVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRq 194 (264)
+.+.++-+..-|.|+ -+..+|..+..|...|.+|.+++..|+.|-....+
T Consensus 25 Q~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~~ 75 (102)
T PF10205_consen 25 QAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEESEQ 75 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444445555555544 66677777777788888888888888877764433
No 160
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=49.84 E-value=1.1e+02 Score=25.10 Aligned_cols=43 Identities=26% Similarity=0.242 Sum_probs=20.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 143 QLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQ 190 (264)
Q Consensus 143 llRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~ 190 (264)
+-.||.+++..++-...|--+|.. |.++..|.+++..+...-.
T Consensus 55 msQNRq~~~dr~ra~~D~~inl~a-----e~ei~~l~~~l~~l~~~~~ 97 (108)
T PF06210_consen 55 MSQNRQAARDRLRAELDYQINLKA-----EQEIERLHRKLDALREKLG 97 (108)
T ss_pred HHhhHhHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHhH
Confidence 447888887544444444433322 3344444444444444333
No 161
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=49.81 E-value=78 Score=25.57 Aligned_cols=31 Identities=32% Similarity=0.245 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 157 KKMYVKDLEMKSRYLESECRKLGRLLHCVLA 187 (264)
Q Consensus 157 KKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~ 187 (264)
||.|=..-|.++..|+.++..|...+..|..
T Consensus 40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~ 70 (87)
T PF12709_consen 40 KKSYEARWEKKVDELENENKALKRENEQLKK 70 (87)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455444555555555544444444444433
No 162
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.70 E-value=89 Score=31.91 Aligned_cols=59 Identities=19% Similarity=0.204 Sum_probs=33.4
Q ss_pred ChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 134 DPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 134 d~eeKR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
++.-||.-|. +.|.|..+-+-+--+.||.+ .++..+.+++...+....-|..++++|++
T Consensus 53 ~katkr~i~~----e~alR~qa~dt~~~~rle~q--~~T~~ctree~t~k~~~~lt~e~~~~lqq 111 (463)
T KOG1645|consen 53 GKATKRQIRP----EYALRVQAMDTENEQRLEEQ--RRTHTCTREEKTNKEHVELTAELRAQLQQ 111 (463)
T ss_pred ChhHHHHHHH----HHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHHHHHHHHhhhHHHHHhhhh
Confidence 4455665544 33444434343444445544 44555666666666666777778888776
No 163
>PHA03162 hypothetical protein; Provisional
Probab=49.50 E-value=13 Score=32.24 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 156 RKKMYVKDLEMKSRYLESECRKLGRLLH 183 (264)
Q Consensus 156 RKKeYVeeLE~KVk~LE~EN~~L~~ql~ 183 (264)
+|+.-|++|..++..|+-||..|++++.
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556789999999999999999998883
No 164
>PRK01203 prefoldin subunit alpha; Provisional
Probab=49.30 E-value=51 Score=28.19 Aligned_cols=40 Identities=13% Similarity=0.180 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024703 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNA 201 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~~ 201 (264)
.+++.+++.|+++...|+++++.|......+...+.....
T Consensus 3 ~~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~ 42 (130)
T PRK01203 3 RDVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSD 42 (130)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4677888888888888888888888777777766655433
No 165
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=49.27 E-value=85 Score=25.13 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 158 KMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 158 KeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
..-+.+|+.++..++.....|..+...+...-..++..|+.
T Consensus 66 ~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 66 EEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666666666666666666543
No 166
>PRK02793 phi X174 lysis protein; Provisional
Probab=49.04 E-value=1.2e+02 Score=23.14 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLR 193 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LR 193 (264)
|++|-.-|...++++.+|++++..|......++
T Consensus 24 Ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 24 IEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444544555555555666666666655444443
No 167
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=49.03 E-value=42 Score=27.13 Aligned_cols=29 Identities=24% Similarity=0.197 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 168 SRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 168 Vk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
...++.++.+|++++..|..||.-||.-+
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diLKKa~ 101 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELLKEAV 101 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677778888888888888887665
No 168
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=49.03 E-value=1.3e+02 Score=26.06 Aligned_cols=32 Identities=22% Similarity=0.194 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 167 KSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 167 KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
+.+.++.|..+|+.++.....+...||.|...
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEG 186 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456677777888888888888888877654
No 169
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=48.90 E-value=41 Score=34.39 Aligned_cols=36 Identities=14% Similarity=0.060 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 164 LEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 164 LE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
|+..-++++++..+|+.++++++.....|..+|...
T Consensus 107 v~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~ 142 (472)
T TIGR03752 107 VQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGV 142 (472)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334446788888899999999999999999888543
No 170
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=48.84 E-value=1.3e+02 Score=31.34 Aligned_cols=43 Identities=21% Similarity=0.241 Sum_probs=23.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 137 SKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLG 179 (264)
Q Consensus 137 eKR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~ 179 (264)
.|.+..+++...........-+..+..|+..+...+.++..|.
T Consensus 149 qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~ 191 (546)
T PF07888_consen 149 QKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLK 191 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666666666665556666666655554444444443
No 171
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=48.52 E-value=59 Score=32.42 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024703 156 RKKMYVKDLEMKSRYLESECRK 177 (264)
Q Consensus 156 RKKeYVeeLE~KVk~LE~EN~~ 177 (264)
+|++||..||.||+.|..|.+.
T Consensus 198 kRQ~yI~~LEsKVqDLm~Eirn 219 (401)
T PF06785_consen 198 KRQAYIGKLESKVQDLMYEIRN 219 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666665555443
No 172
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=48.42 E-value=1.2e+02 Score=29.49 Aligned_cols=60 Identities=10% Similarity=0.173 Sum_probs=46.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 024703 141 RRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (264)
Q Consensus 141 rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~ 200 (264)
.+++--.+.-.++|+|=-.-+.-=|.+|..|+.++...++++..|..|...+|..|.+..
T Consensus 70 q~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ 129 (307)
T PF10481_consen 70 QSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQ 129 (307)
T ss_pred hhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666677777666666666777888888888889999999999999988876543
No 173
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.20 E-value=1.3e+02 Score=28.71 Aligned_cols=61 Identities=8% Similarity=0.057 Sum_probs=31.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 024703 142 RQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGAS 205 (264)
Q Consensus 142 RllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~~~g~~ 205 (264)
+|..-=+..+..+.-++..+..++.+++.|+.++..|.+.|. ..+..|..|+.....+|..
T Consensus 56 ~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~---~r~~~l~~raRAmq~nG~~ 116 (265)
T COG3883 56 SLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV---ERQELLKKRARAMQVNGTA 116 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHcCCh
Confidence 333333444444445555555555555555555555554433 4555666666555555533
No 174
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=47.91 E-value=1e+02 Score=32.23 Aligned_cols=39 Identities=28% Similarity=0.342 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
+.+||.+...+...+..|...+..|..||..|+..|...
T Consensus 150 l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~ 188 (546)
T KOG0977|consen 150 LSELEAEINTLKRRIKALEDELKRLKAENSRLREELARA 188 (546)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 446666666666666667777777777777777666544
No 175
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=47.85 E-value=1.2e+02 Score=22.76 Aligned_cols=31 Identities=23% Similarity=0.287 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 167 KSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 167 KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
|+.+|..+.+.|..++.+|..+...||..++
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~ 34 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQ 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555443
No 176
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=47.43 E-value=80 Score=24.90 Aligned_cols=31 Identities=26% Similarity=0.264 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 167 KSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 167 KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
++..++.+...|...+..+..+-..|+..++
T Consensus 95 r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 95 RLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444443
No 177
>PRK09343 prefoldin subunit beta; Provisional
Probab=47.32 E-value=93 Score=25.63 Aligned_cols=58 Identities=24% Similarity=0.253 Sum_probs=27.5
Q ss_pred CCCCChhHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 130 DNADDPISKKRRR--QLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQ 190 (264)
Q Consensus 130 ~d~dd~eeKR~rR--llRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~ 190 (264)
.++|.+.-|-..+ +...+..|..-=..|++|+ +.+++.|+.+...|+.++..++...+
T Consensus 50 L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~i---e~~ik~lekq~~~l~~~l~e~q~~l~ 109 (121)
T PRK09343 50 LPDDTPIYKIVGNLLVKVDKTKVEKELKERKELL---ELRSRTLEKQEKKLREKLKELQAKIN 109 (121)
T ss_pred CCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666644 2234444433333333333 35555555555555555555444433
No 178
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=47.25 E-value=2.9e+02 Score=28.09 Aligned_cols=9 Identities=0% Similarity=-0.049 Sum_probs=4.9
Q ss_pred ccccccccc
Q 024703 223 SFPHILGSW 231 (264)
Q Consensus 223 s~pw~~~~~ 231 (264)
-++|.++=-
T Consensus 298 ~l~~PV~G~ 306 (420)
T COG4942 298 QLAWPVTGR 306 (420)
T ss_pred CcCCCCCCc
Confidence 457765433
No 179
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=47.16 E-value=81 Score=30.94 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRF 194 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRq 194 (264)
..+..|+.+.+.++.++.++++++..+..|+..|+.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 29 KELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345666666666666666677666666666666653
No 180
>PLN02678 seryl-tRNA synthetase
Probab=47.12 E-value=75 Score=32.04 Aligned_cols=66 Identities=11% Similarity=-0.011 Sum_probs=40.0
Q ss_pred HHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccC
Q 024703 142 RQLRNRDAAVRSR-ERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASLT 207 (264)
Q Consensus 142 RllRNReSAqrSR-qRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~~~g~~t~ 207 (264)
|-.||..|.+-.. .+.++-.++|-.+++.|..+...|..++..+..+...+-..|.+....-++.+
T Consensus 53 r~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi~~~~VP~G 119 (448)
T PLN02678 53 RKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNLVHDSVPVS 119 (448)
T ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCC
Confidence 3345555554432 22334455666677777777777877777777777777777766544444433
No 181
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=47.08 E-value=75 Score=26.00 Aligned_cols=38 Identities=29% Similarity=0.328 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
.+|..+++--+.|-.-|++.+..+..+|..|+..|.+.
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~ky 41 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKY 41 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777777778888888888888888887654
No 182
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=46.88 E-value=42 Score=25.34 Aligned_cols=42 Identities=24% Similarity=0.297 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcC
Q 024703 159 MYVKDLEMKSRYLESEC----RKLGRLLHCVLAENQSLRFSLQKGN 200 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN----~~L~~ql~~L~~EN~~LRqqLq~~~ 200 (264)
..|..+|.-+.-|+++- ..|...|..|+.+|..|.-+|-+..
T Consensus 3 ~qv~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~~~dL~~kL~m~~ 48 (60)
T PF14916_consen 3 QQVQSLEKSILFLQQEHAQTLKGLHAEIERLQKRNKDLTFKLIMKQ 48 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeecC
Confidence 35667777777777664 4577888888888888887775543
No 183
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=46.78 E-value=38 Score=30.35 Aligned_cols=30 Identities=30% Similarity=0.318 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 167 KSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 167 KVk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
++..|+.++..|+..++.+..||..||+.-
T Consensus 13 ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq 42 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQELRKENKTLKQLQ 42 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666666666666666666543
No 184
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=46.75 E-value=1.7e+02 Score=24.45 Aligned_cols=22 Identities=14% Similarity=0.108 Sum_probs=9.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHH
Q 024703 142 RQLRNRDAAVRSRERKKMYVKD 163 (264)
Q Consensus 142 RllRNReSAqrSRqRKKeYVee 163 (264)
++...-+.+.+.-.+|+..+..
T Consensus 114 ~~~~~~~~~~~~l~~k~~~~~k 135 (218)
T cd07596 114 DALLTLQSLKKDLASKKAQLEK 135 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444443333
No 185
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=46.57 E-value=56 Score=25.22 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024703 173 SECRKLGRLLHCVLAENQSLRFS 195 (264)
Q Consensus 173 ~EN~~L~~ql~~L~~EN~~LRqq 195 (264)
.++.+++.+...+..||..|+-.
T Consensus 42 ~~l~~l~~~~~~l~~e~~~L~lE 64 (97)
T PF04999_consen 42 YELQQLEKEIDQLQEENERLRLE 64 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 186
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=46.54 E-value=1.2e+02 Score=24.10 Aligned_cols=34 Identities=21% Similarity=0.115 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 155 ERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAE 188 (264)
Q Consensus 155 qRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~E 188 (264)
.|-+.|+..|..|+..|..-|..|+.+...++..
T Consensus 22 ~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~~ 55 (76)
T PF11544_consen 22 DRLNILVGSLRGKLIKYTELNKKLQDQLLNLQRS 55 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777788888877777777777666665554
No 187
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.51 E-value=96 Score=24.37 Aligned_cols=36 Identities=17% Similarity=0.162 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRF 194 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRq 194 (264)
+++.+||.++..-++.+..|...+.........++.
T Consensus 8 ~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~ 43 (72)
T COG2900 8 ARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQA 43 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888777666666666555444433333333
No 188
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=46.49 E-value=69 Score=31.40 Aligned_cols=42 Identities=12% Similarity=0.109 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNA 201 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~~ 201 (264)
+...|+.+++.|+.++..|..+...+..|...|+..+.....
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 23 KLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345678889999999999999999999999999999887654
No 189
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=46.28 E-value=12 Score=29.77 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSL 192 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~L 192 (264)
.|+..|...+..|..++..|+.++..|..++..+
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~ 58 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEEL 58 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 5777777777777777777766665544443333
No 190
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=46.14 E-value=76 Score=23.74 Aligned_cols=36 Identities=14% Similarity=0.118 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFS 195 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqq 195 (264)
-|++|-.-|...++++.+|++++..|......++..
T Consensus 19 ~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~ 54 (69)
T PF04102_consen 19 TIEELNDVVTEQQRQIDRLQRQLRLLRERLRELEDP 54 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 455666666666777777777777777776666643
No 191
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=46.07 E-value=1.8e+02 Score=24.66 Aligned_cols=33 Identities=12% Similarity=0.067 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 163 DLEMKSRYLESECRKLGRLLHCVLAENQSLRFS 195 (264)
Q Consensus 163 eLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqq 195 (264)
.+|..+..|+..|..|...|..+......++..
T Consensus 32 ~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~ 64 (143)
T PF12718_consen 32 QKEQEITSLQKKNQQLEEELDKLEEQLKEAKEK 64 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443333333333
No 192
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=45.86 E-value=61 Score=35.04 Aligned_cols=30 Identities=23% Similarity=0.491 Sum_probs=24.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 144 LRNRDAAVRSRERKKMYVKDLEMKSRYLES 173 (264)
Q Consensus 144 lRNReSAqrSRqRKKeYVeeLE~KVk~LE~ 173 (264)
++.-+-|+.++..||+|+++|.-+++-|+.
T Consensus 416 l~ksq~~kl~k~q~k~y~de~dyr~kl~~k 445 (763)
T TIGR00993 416 LTKAQMAKLSKEQRKAYLEEYDYRVKLLQK 445 (763)
T ss_pred ccHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 444456788999999999999999987764
No 193
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=45.28 E-value=3.9e+02 Score=28.10 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=24.2
Q ss_pred CcHHHHHHhhccCCCCCCccCCCcccHHHHHhhh
Q 024703 40 PWIGDIESMLMNDNDDNSELEPNQQSLDDFFADV 73 (264)
Q Consensus 40 ~~~~eie~~lm~d~~~~~~~~~~~~~~~~f~~~~ 73 (264)
+.-.+|=+||.|=.+...+.... ..|++||.|+
T Consensus 288 dakk~LvklLinl~~~K~v~gIt-D~Ve~fl~d~ 320 (557)
T PF01763_consen 288 DAKKRLVKLLINLSEMKHVGGIT-DVVESFLQDV 320 (557)
T ss_pred CHHHHHHHHHHhcccCcccCCch-hhHHHHHHhc
Confidence 34577888998877765555554 6789999887
No 194
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=45.10 E-value=74 Score=28.45 Aligned_cols=22 Identities=23% Similarity=0.157 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 024703 178 LGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 178 L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
+..++..|.-|+..|.+++...
T Consensus 98 ~ek~l~~Lk~e~evL~qr~~kl 119 (201)
T PF13851_consen 98 LEKELKDLKWEHEVLEQRFEKL 119 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666554
No 195
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=45.03 E-value=46 Score=27.93 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESECRKLG 179 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~ 179 (264)
+.++.|+.++..|+.++.+++
T Consensus 112 ~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 112 ERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 455556666655555555443
No 196
>KOG1055 consensus GABA-B ion channel receptor subunit GABABR1 and related subunits, G-protein coupled receptor superfamily [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=44.76 E-value=7.6 Score=41.95 Aligned_cols=63 Identities=24% Similarity=0.218 Sum_probs=50.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 024703 138 KKRRRQLRNRDAAVRSRERKKMY----VKDLEM-KSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (264)
Q Consensus 138 KR~rRllRNReSAqrSRqRKKeY----VeeLE~-KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~ 200 (264)
.|.+.+.+|=..+..+|.+++-- +.+.++ +.+.+..||.+|++++....+....||++|+-..
T Consensus 726 pKv~~l~t~p~~~se~q~n~~~~~ss~~~k~~eer~~~lk~EN~~l~~~i~ekee~i~e~~~~l~~~~ 793 (865)
T KOG1055|consen 726 PKLRHLITNPQWASEAQRNMKTGPSSSVNENEEERLRLLKKENRRLRKKIMEKEERLSELKHQLQPRP 793 (865)
T ss_pred hhheeeecCchhhhhhhhccccCcccccchhHHHHhhhhhcccHHHHHhcccchHHHHHHHHhccccc
Confidence 45667788888888877776654 566655 7788999999999999999999999999997543
No 197
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=44.76 E-value=42 Score=28.70 Aligned_cols=34 Identities=35% Similarity=0.323 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRF 194 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRq 194 (264)
++.|+.+++.-..++..|++++..+...|..|-.
T Consensus 96 ~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lek 129 (131)
T PF04859_consen 96 VKKLEAELRAKDSEIDRLREKLDELNRANKSLEK 129 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455555555555666666666666666666543
No 198
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=44.37 E-value=1.3e+02 Score=32.53 Aligned_cols=61 Identities=16% Similarity=0.095 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHH
Q 024703 146 NRDAAVRSRERKKMY-----VKDLEMKSRYLESECRKLG-----------------------------------RLLHCV 185 (264)
Q Consensus 146 NReSAqrSRqRKKeY-----VeeLE~KVk~LE~EN~~L~-----------------------------------~ql~~L 185 (264)
+|......++|+..- +.+...+...|+.+|.+|+ .++..|
T Consensus 485 ~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr~~~e~~~l~gd~~~~~~rVl~~~~npt~~~~~~~k~~~e~L 564 (716)
T KOG4593|consen 485 SSREQSLLFQREESELLREKIEQYLKELELLEEENDRLRAQLERRLLQGDYEENITRVLHMSTNPTSKARQIKKNRLEEL 564 (716)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccceeeecCCchHHHHHHHHHHHHHH
Confidence 455566667777665 6667777777777775442 344568
Q ss_pred HHHHHHHHHHHHhcCCCCCcc
Q 024703 186 LAENQSLRFSLQKGNAYGASL 206 (264)
Q Consensus 186 ~~EN~~LRqqLq~~~~~g~~t 206 (264)
++||..||.+|......|...
T Consensus 565 qaE~~~lk~~l~~le~~~~~~ 585 (716)
T KOG4593|consen 565 QAELERLKERLTALEGDKMQF 585 (716)
T ss_pred HHHHHHHHHHHHHHhccCCcc
Confidence 999999999998877766543
No 199
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=44.27 E-value=1.5e+02 Score=31.28 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=33.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhc
Q 024703 145 RNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGR----------LLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 145 RNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~----------ql~~L~~EN~~LRqqLq~~ 199 (264)
+|.+.-.+--..+++.+.+||.+++.++.+.....+ .+....+.|..||++|...
T Consensus 108 ~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~El 172 (617)
T PF15070_consen 108 ENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAEL 172 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHH
Confidence 344433333346778888888888877665433222 2344567788888887654
No 200
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=44.27 E-value=1.3e+02 Score=26.13 Aligned_cols=47 Identities=17% Similarity=0.082 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024703 157 KKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYG 203 (264)
Q Consensus 157 KKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~~~g 203 (264)
++.|+..||.+++.+......|..+...+...-..+-..+...+...
T Consensus 29 ~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~E 75 (236)
T PF09325_consen 29 IKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKSE 75 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 56999999999999999999888888877777777777666555443
No 201
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=44.23 E-value=1.6e+02 Score=27.46 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=33.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 142 RQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCV 185 (264)
Q Consensus 142 RllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L 185 (264)
-.++-|+.++.--++|.+|+..+...-.+++.+...++.++++.
T Consensus 153 ~vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a 196 (243)
T cd07666 153 GVIKRRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA 196 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 45688888888888888888887664467777777777777765
No 202
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=43.83 E-value=1.2e+02 Score=23.04 Aligned_cols=14 Identities=36% Similarity=0.427 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 024703 183 HCVLAENQSLRFSL 196 (264)
Q Consensus 183 ~~L~~EN~~LRqqL 196 (264)
..|..||..|++.|
T Consensus 50 ~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 50 NKLKEENEALRKEL 63 (69)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555554
No 203
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=43.67 E-value=60 Score=26.20 Aligned_cols=38 Identities=21% Similarity=0.185 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhc
Q 024703 162 KDLEMKSRYLESECRKL--GRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L--~~ql~~L~~EN~~LRqqLq~~ 199 (264)
...+.++..+|++...| +..++.|..+...+|-.+...
T Consensus 45 ~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l 84 (106)
T PF10805_consen 45 DEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKEL 84 (106)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHH
Confidence 33366666666666666 666777777777777666544
No 204
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=43.55 E-value=93 Score=27.36 Aligned_cols=42 Identities=24% Similarity=0.263 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 158 KMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 158 KeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
+.|+..|+.++..+++++..|+..+.....+....++.|.+.
T Consensus 78 ~~~r~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn 119 (158)
T PF09486_consen 78 RRYRDVLEERVRAAEAELAALRQALRAAEDEIAATRRAIARN 119 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357777788888888888888777777777777666666543
No 205
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=43.16 E-value=50 Score=33.28 Aligned_cols=34 Identities=21% Similarity=0.261 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 163 DLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 163 eLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
+++.+.+.|+..|++|..+++.|..++..++.++
T Consensus 294 E~~~rqk~le~~n~~L~~rieeLk~~~~~~~~~~ 327 (411)
T KOG1318|consen 294 ELENRQKKLESTNQELALRIEELKSEAGRHGLQV 327 (411)
T ss_pred HHHhhhhHHHhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 4444444555555666666666665555555444
No 206
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=43.02 E-value=1.8e+02 Score=30.72 Aligned_cols=78 Identities=19% Similarity=0.251 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcCCCCCcc--CccchhhH--hhhccccccccc
Q 024703 158 KMYVKDLEMKSRYLESECRKL-------GRLLHCVLAENQSLRFSLQKGNAYGASL--TKQESAVL--LLGMIHELSFPH 226 (264)
Q Consensus 158 KeYVeeLE~KVk~LE~EN~~L-------~~ql~~L~~EN~~LRqqLq~~~~~g~~t--~~qesAvL--~~~sL~~~s~pw 226 (264)
+.|+..++.+.+.++....+| ..+++.|+.+|..||.++-..+-++.-. -.++..-| ...-+....-.|
T Consensus 279 ~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l 358 (581)
T KOG0995|consen 279 QAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRL 358 (581)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468887777766666655555 4556677777778877775542222110 00011000 011233444578
Q ss_pred cccccchhH
Q 024703 227 ILGSWNVEL 235 (264)
Q Consensus 227 ~~~~~~~~l 235 (264)
..-.|...|
T Consensus 359 ~k~vw~~~l 367 (581)
T KOG0995|consen 359 SKEVWELKL 367 (581)
T ss_pred HHHHHhHHH
Confidence 888888877
No 207
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=43.02 E-value=2.8e+02 Score=27.16 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 175 CRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 175 N~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
+++|++++..|.+|+..|+.+|..
T Consensus 180 vN~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 180 VNRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 467899999999999999999965
No 208
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=42.96 E-value=2.1e+02 Score=24.30 Aligned_cols=34 Identities=26% Similarity=0.238 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSL 192 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~L 192 (264)
..++.||.+++.|+.+-..+++++..|+.+...+
T Consensus 77 er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 77 ERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999999888775543
No 209
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=42.92 E-value=60 Score=30.61 Aligned_cols=33 Identities=36% Similarity=0.433 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLR 193 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LR 193 (264)
++.|+.+.+.++.+...+++++..++.+...++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (364)
T TIGR01242 8 IRKLEDEKRSLEKEKIRLERELERLRSEIERLR 40 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555555555544444444433
No 210
>PF04599 Pox_G5: Poxvirus G5 protein; InterPro: IPR007678 Protein G5 is found in a number of Poxviruses.
Probab=42.90 E-value=88 Score=31.71 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 147 RDAAVRSRERKKMYVKDLEMKSRYL 171 (264)
Q Consensus 147 ReSAqrSRqRKKeYVeeLE~KVk~L 171 (264)
|.|-+..-+||++.++.|+.....|
T Consensus 87 r~a~k~~~~RK~~~i~~l~~~~~~l 111 (425)
T PF04599_consen 87 RKALKNTIKRKREEIENLEDCIKNL 111 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7888888899999999998877643
No 211
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=42.78 E-value=2.4e+02 Score=26.86 Aligned_cols=54 Identities=17% Similarity=0.131 Sum_probs=33.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 142 RQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFS 195 (264)
Q Consensus 142 RllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqq 195 (264)
-+.+.++..+.-+.|-..--..||.-|+.|+.+|..|......+..+-..-|..
T Consensus 54 ~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~e 107 (309)
T PF09728_consen 54 QLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKE 107 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666667788888888888877765554444443333433
No 212
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=42.65 E-value=49 Score=24.69 Aligned_cols=28 Identities=14% Similarity=0.122 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 163 DLEMKSRYLESECRKLGRLLHCVLAENQ 190 (264)
Q Consensus 163 eLE~KVk~LE~EN~~L~~ql~~L~~EN~ 190 (264)
.+|.|+..||++.+..+.+++....+-+
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~ 56 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARAK 56 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666665555544443
No 213
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=42.56 E-value=1.4e+02 Score=25.34 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 157 KKMYVKDLEMKSRYLESECRKLGRLLHCVLAE 188 (264)
Q Consensus 157 KKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~E 188 (264)
|..-..+|+.++..++.++++|.-+.+.+.+|
T Consensus 18 K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e 49 (131)
T PF11068_consen 18 KEELLQELQEQIQQLDQELQQLEFQGKRMIKE 49 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555554444444444
No 214
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=42.49 E-value=1e+02 Score=31.20 Aligned_cols=70 Identities=19% Similarity=0.145 Sum_probs=52.7
Q ss_pred HHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccchh
Q 024703 143 QLRNRDAAVRSRERK--KMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASLTKQESA 212 (264)
Q Consensus 143 llRNReSAqrSRqRK--KeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~~~g~~t~~qesA 212 (264)
..||+.|.+-.|..+ ..|...|-.+++.+..+...+..++..+.++-..+...+.+.....++.++.+..
T Consensus 50 ~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ll~ipNi~~~~VPvg~de~~ 121 (429)
T COG0172 50 AERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTLLLTIPNIPHESVPVGKDEDD 121 (429)
T ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCccccCcCCCccc
Confidence 347777776654333 3377888889999999999999999989888888888888777767776665543
No 215
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=42.33 E-value=1.7e+02 Score=23.13 Aligned_cols=57 Identities=18% Similarity=0.197 Sum_probs=35.3
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 136 ISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSL 192 (264)
Q Consensus 136 eeKR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~L 192 (264)
..+|..+.+.+=+++-..|.-+..-..+||.+++.|...-.+|.+++.+..++...|
T Consensus 9 al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~L 65 (89)
T PF13747_consen 9 ALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRL 65 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHH
Confidence 445666666666666666655555557777777777777666666665544443333
No 216
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=42.29 E-value=1.5e+02 Score=23.44 Aligned_cols=34 Identities=21% Similarity=0.169 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLRFS 195 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqq 195 (264)
+.|-.++..|+.....|..++..+..||..|++.
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~E 52 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESE 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666654
No 217
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=42.16 E-value=2e+02 Score=28.15 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024703 163 DLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAY 202 (264)
Q Consensus 163 eLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~~~ 202 (264)
+...+.+.|..++..|++++..++-++..||.++......
T Consensus 76 ~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~ 115 (319)
T PF09789_consen 76 ESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVG 115 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhh
Confidence 3344555666666677777777777888888887665433
No 218
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=42.02 E-value=40 Score=28.09 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 167 KSRYLESECRKLGRLLHCVLAENQ 190 (264)
Q Consensus 167 KVk~LE~EN~~L~~ql~~L~~EN~ 190 (264)
+.++|+.||+-|+.++.-|...+.
T Consensus 80 k~~~LeEENNlLklKievLLDMLt 103 (108)
T cd07429 80 KNQQLEEENNLLKLKIEVLLDMLA 103 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888776655443
No 219
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=41.88 E-value=2.4e+02 Score=27.80 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=15.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 024703 137 SKKRRRQLRNRDAAVRSRERKK 158 (264)
Q Consensus 137 eKR~rRllRNReSAqrSRqRKK 158 (264)
.++.|+++++|......=+||-
T Consensus 121 ~~e~r~~lk~RI~rSEAFKRKl 142 (323)
T PF08537_consen 121 GREERRLLKDRILRSEAFKRKL 142 (323)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678899998877766664
No 220
>PRK12704 phosphodiesterase; Provisional
Probab=41.82 E-value=2.2e+02 Score=29.15 Aligned_cols=8 Identities=25% Similarity=-0.085 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 024703 181 LLHCVLAE 188 (264)
Q Consensus 181 ql~~L~~E 188 (264)
.+.....+
T Consensus 125 eLe~~~~~ 132 (520)
T PRK12704 125 ELEKKEEE 132 (520)
T ss_pred HHHHHHHH
Confidence 33333333
No 221
>PRK14148 heat shock protein GrpE; Provisional
Probab=41.82 E-value=82 Score=28.50 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024703 171 LESECRKLGRLLHCVLAENQSLR 193 (264)
Q Consensus 171 LE~EN~~L~~ql~~L~~EN~~LR 193 (264)
|+.++.+|+.++..+.++...+|
T Consensus 52 l~~e~~elkd~~lR~~Ae~eN~r 74 (195)
T PRK14148 52 LEDSCDQFKDEALRAKAEMENIR 74 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 222
>PF06424 PRP1_N: PRP1 splicing factor, N-terminal; InterPro: IPR010491 This domain is specific to the N-terminal part of the prp1 splicing factor, which is involved in mRNA splicing (and possibly also poly(A)+ RNA nuclear export and cell cycle progression). This domain is specific to the N terminus of the RNA splicing factor encoded by prp1 []. It is involved in mRNA splicing and possibly also poly(A)and RNA nuclear export and cell cycle progression.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005634 nucleus
Probab=41.67 E-value=1.9e+02 Score=24.85 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=12.6
Q ss_pred CCCCChhHHHHHHHHHhHHHHHH
Q 024703 130 DNADDPISKKRRRQLRNRDAAVR 152 (264)
Q Consensus 130 ~d~dd~eeKR~rRllRNReSAqr 152 (264)
-+.++.+.-+.--.+-.|...++
T Consensus 58 yD~dD~EAD~Iy~~ID~rmd~Rr 80 (133)
T PF06424_consen 58 YDDDDEEADRIYESIDRRMDSRR 80 (133)
T ss_pred CccchHHHHHHHHHHHHHHHhcc
Confidence 45666666666544555544433
No 223
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.34 E-value=81 Score=31.37 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024703 173 SECRKLGRLLHCVLAENQSLR 193 (264)
Q Consensus 173 ~EN~~L~~ql~~L~~EN~~LR 193 (264)
.+..+|+++++.|.+...-|+
T Consensus 253 ~~~etLEqq~~~L~~niDIL~ 273 (365)
T KOG2391|consen 253 AMKETLEQQLQSLQKNIDILK 273 (365)
T ss_pred HHHHHHHHHHHHHHhhhHHHH
Confidence 333344444443333333333
No 224
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=41.30 E-value=1.5e+02 Score=25.59 Aligned_cols=12 Identities=25% Similarity=0.277 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 024703 185 VLAENQSLRFSL 196 (264)
Q Consensus 185 L~~EN~~LRqqL 196 (264)
...|...|+.+|
T Consensus 159 ~~~ei~~lk~el 170 (192)
T PF05529_consen 159 LSEEIEKLKKEL 170 (192)
T ss_pred hHHHHHHHHHHH
Confidence 334444444444
No 225
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=40.92 E-value=78 Score=30.16 Aligned_cols=31 Identities=23% Similarity=0.231 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 155 ERKKMYVKDLEMKSRYLESECRKLGRLLHCV 185 (264)
Q Consensus 155 qRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L 185 (264)
.+..+.+..||.....+.++...|+.+...+
T Consensus 60 ~~l~~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 60 EELLQELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555554444433
No 226
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=40.71 E-value=1.4e+02 Score=25.25 Aligned_cols=33 Identities=9% Similarity=-0.053 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSL 192 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~L 192 (264)
++...|...+......++|+..++.+..++..+
T Consensus 49 e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~ 81 (160)
T PF13094_consen 49 EIEKEEAALERDYEYLQELEKNAKALEREREEE 81 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333344444444444444333
No 227
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=40.48 E-value=51 Score=34.59 Aligned_cols=44 Identities=20% Similarity=0.291 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 024703 157 KKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (264)
Q Consensus 157 KKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~ 200 (264)
-|..+..|+.++-.|..++++|.+.++.|.++|..|++.+....
T Consensus 421 ~~~e~s~l~~~~vt~~~q~~el~~~v~~l~~~n~~l~s~~~~~r 464 (669)
T KOG0818|consen 421 MKSELSDLRKQAVTLTKQVQELTEVVHALQASNAKLQSLMKVNR 464 (669)
T ss_pred hhhhhhhHhhcchhhHHHHHHHHHHHHHHHhhhHHHHHHHhhcc
Confidence 35778999999999999999999999999999999999886543
No 228
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=40.17 E-value=2.6e+02 Score=27.36 Aligned_cols=29 Identities=28% Similarity=0.197 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHCVLAEN 189 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~L~~EN 189 (264)
|..|..++..|+.+...++..+..|..|-
T Consensus 137 V~kL~k~i~~Le~e~~~~q~~le~Lr~EK 165 (310)
T PF09755_consen 137 VNKLQKKIERLEKEKSAKQEELERLRREK 165 (310)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45555555555554444444444444443
No 229
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=40.03 E-value=1.3e+02 Score=21.14 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024703 175 CRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 175 N~~L~~ql~~L~~EN~~LRqqLq 197 (264)
...|...+..|..+|..|++++.
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~ 49 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIA 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666654
No 230
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=39.91 E-value=98 Score=22.74 Aligned_cols=25 Identities=24% Similarity=0.131 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 162 KDLEMKSRYLESECRKLGRLLHCVL 186 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L~~ql~~L~ 186 (264)
.....++..|+.+|..|+.++..++
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455567777778888877776543
No 231
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=39.86 E-value=1.7e+02 Score=22.93 Aligned_cols=33 Identities=33% Similarity=0.454 Sum_probs=24.0
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 151 VRSRERKK----MYVKDLEMKSRYLESECRKLGRLLH 183 (264)
Q Consensus 151 qrSRqRKK----eYVeeLE~KVk~LE~EN~~L~~ql~ 183 (264)
.+-|.||. ..+..|..|+..+..+|..|+.++.
T Consensus 63 ~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 63 KRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455554 4567888888999999999888764
No 232
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=39.86 E-value=1.5e+02 Score=25.72 Aligned_cols=15 Identities=20% Similarity=0.366 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHH
Q 024703 155 ERKKMYVKDLEMKSR 169 (264)
Q Consensus 155 qRKKeYVeeLE~KVk 169 (264)
++|++|+++|..+..
T Consensus 18 ~~K~~~LqEL~~Q~v 32 (142)
T PF08781_consen 18 KKKKEQLQELILQQV 32 (142)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 667788888775443
No 233
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=39.79 E-value=85 Score=24.57 Aligned_cols=19 Identities=11% Similarity=0.085 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024703 176 RKLGRLLHCVLAENQSLRF 194 (264)
Q Consensus 176 ~~L~~ql~~L~~EN~~LRq 194 (264)
..+..++..+..+-..+..
T Consensus 77 ~~lk~~i~~le~~~~~~e~ 95 (108)
T PF02403_consen 77 KELKEEIKELEEQLKELEE 95 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 234
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=39.74 E-value=16 Score=31.88 Aligned_cols=36 Identities=31% Similarity=0.295 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 163 DLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 163 eLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
.+...+..|+.+.++|+.++..|..||..||..+..
T Consensus 12 ~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~ 47 (181)
T PF09311_consen 12 ALQQHLQSLEAERQKLRAQVRRLCQENDWLRGELAN 47 (181)
T ss_dssp HHHHHHHHHHHCCHHHHT------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666666666777777666543
No 235
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=39.63 E-value=82 Score=28.06 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 170 YLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 170 ~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
..|.|+..|++.|..-+.....||++|
T Consensus 40 KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 40 KVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 334444455555555555555555554
No 236
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=39.54 E-value=76 Score=32.52 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 024703 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~ 200 (264)
.+|..++.+|.++|.+|.+.+.....+...||.+|...+
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 42 (512)
T TIGR03689 4 RELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLA 42 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467788888999999999999999999999999987764
No 237
>PRK00846 hypothetical protein; Provisional
Probab=39.24 E-value=1.9e+02 Score=22.74 Aligned_cols=35 Identities=11% Similarity=0.079 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRF 194 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRq 194 (264)
-|++|-.-|....+++.+|++++..|......+..
T Consensus 28 tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~ 62 (77)
T PRK00846 28 ALTELSEALADARLTGARNAELIRHLLEDLGKVRS 62 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35566666666666777777777777665555553
No 238
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=39.19 E-value=3.1e+02 Score=25.22 Aligned_cols=34 Identities=26% Similarity=0.226 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSL 192 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~L 192 (264)
.-+..|+.+.+..+.+-..|......+..+++.|
T Consensus 33 ~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL 66 (246)
T PF00769_consen 33 ETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRL 66 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555544444444433333333333333
No 239
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=39.16 E-value=7.1 Score=31.78 Aligned_cols=7 Identities=57% Similarity=0.662 Sum_probs=3.4
Q ss_pred chhhHhh
Q 024703 210 ESAVLLL 216 (264)
Q Consensus 210 esAvL~~ 216 (264)
.+++|.+
T Consensus 58 d~~vlkl 64 (118)
T PF08286_consen 58 DSNVLKL 64 (118)
T ss_dssp CCCHHHH
T ss_pred chHHHHH
Confidence 4455543
No 240
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=39.08 E-value=10 Score=35.56 Aligned_cols=33 Identities=30% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSL 192 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~L 192 (264)
.|.+|...|..|-.+|.+|++..++|.+||.+|
T Consensus 130 ~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 130 KIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666677777788888888888888888888
No 241
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=38.70 E-value=88 Score=23.82 Aligned_cols=18 Identities=28% Similarity=0.233 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024703 180 RLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 180 ~ql~~L~~EN~~LRqqLq 197 (264)
.++.....+|..|+..+.
T Consensus 40 ~~l~~a~~e~~~Lk~E~e 57 (69)
T PF14197_consen 40 RQLGDAYEENNKLKEENE 57 (69)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555543
No 242
>PRK14160 heat shock protein GrpE; Provisional
Probab=38.61 E-value=1.2e+02 Score=27.93 Aligned_cols=38 Identities=26% Similarity=0.239 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
+..|+.++..|+.++..|+.++..+.++....|.+..+
T Consensus 63 ~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~k 100 (211)
T PRK14160 63 NNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAK 100 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777777666543
No 243
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=38.31 E-value=1.1e+02 Score=29.44 Aligned_cols=34 Identities=29% Similarity=0.231 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 164 LEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 164 LE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
|+.++++|+..+.+|...+..+..+...|+.++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (389)
T PRK03992 13 LEEQIRQLELKLRDLEAENEKLERELERLKSELE 46 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444443
No 244
>PRK04325 hypothetical protein; Provisional
Probab=38.23 E-value=1.8e+02 Score=22.23 Aligned_cols=31 Identities=10% Similarity=0.087 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQS 191 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~ 191 (264)
|++|-.-|...++++.+|+++++.|......
T Consensus 25 Ie~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 25 IDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445445555555566666666666544333
No 245
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=38.19 E-value=1.4e+02 Score=30.76 Aligned_cols=28 Identities=18% Similarity=0.107 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024703 176 RKLGRLLHCVLAENQSLRFSLQKGNAYG 203 (264)
Q Consensus 176 ~~L~~ql~~L~~EN~~LRqqLq~~~~~g 203 (264)
..|+.++++|..||..||.........|
T Consensus 300 Enlqmr~qqleeentelRs~~arlksl~ 327 (502)
T KOG0982|consen 300 ENLQMRDQQLEEENTELRSLIARLKSLA 327 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888888887765554333
No 246
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=37.95 E-value=1.1e+02 Score=26.30 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
.|+..++..+..+..+..+|+.+-....+....||+-|.
T Consensus 47 ~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~ 85 (162)
T PF05565_consen 47 KVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLL 85 (162)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777888888888888888888888888888887764
No 247
>PF13879 KIAA1430: KIAA1430 homologue
Probab=37.44 E-value=1.8e+02 Score=21.98 Aligned_cols=12 Identities=33% Similarity=0.454 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 024703 167 KSRYLESECRKL 178 (264)
Q Consensus 167 KVk~LE~EN~~L 178 (264)
+++..+.+|..|
T Consensus 37 r~~~I~reN~~L 48 (98)
T PF13879_consen 37 RQREIERENQIL 48 (98)
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 248
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=37.16 E-value=1.2e+02 Score=26.91 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 024703 176 RKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 176 ~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
...++.+.+|..||..||..|+.
T Consensus 156 ~~~qe~i~qL~~EN~~LRelL~I 178 (181)
T PF05769_consen 156 QEEQEIIAQLETENKGLRELLQI 178 (181)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhh
Confidence 35678899999999999999974
No 249
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=36.92 E-value=1e+02 Score=25.29 Aligned_cols=28 Identities=29% Similarity=0.223 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 164 LEMKSRYLESECRKLGRLLHCVLAENQS 191 (264)
Q Consensus 164 LE~KVk~LE~EN~~L~~ql~~L~~EN~~ 191 (264)
|+..++.++.....++.++..+...-+.
T Consensus 106 l~~~~~~l~~~l~~~~~~~~~~~~~l~~ 133 (140)
T PRK03947 106 LEKALEKLEEALQKLASRIAQLAQELQQ 133 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444443333333
No 250
>PF14645 Chibby: Chibby family
Probab=36.89 E-value=55 Score=27.21 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 171 LESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 171 LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
...++.+|+++.++|..||..||-++.
T Consensus 69 ~~~~~~~l~~~n~~L~EENN~Lklk~e 95 (116)
T PF14645_consen 69 DGEENQRLRKENQQLEEENNLLKLKIE 95 (116)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
No 251
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=36.80 E-value=88 Score=29.12 Aligned_cols=37 Identities=24% Similarity=0.336 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 155 ERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 155 qRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
.|.++||..|+.+....++...+| ..||..|+++|.+
T Consensus 101 ~kA~~~i~~l~~~~~~~~~~~e~l-------~~e~~~l~~rl~q 137 (232)
T KOG2483|consen 101 DKALEHIQSLERKSATQQQDIEDL-------SRENRKLKARLEQ 137 (232)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 455688888877765554444444 4455555555543
No 252
>KOG4786 consensus Ubinuclein, nuclear protein interacting with cellular and viral transcription factors [Transcription; Signal transduction mechanisms]
Probab=36.77 E-value=64 Score=35.29 Aligned_cols=44 Identities=30% Similarity=0.404 Sum_probs=29.2
Q ss_pred CCCCCcHHHHHHhhccCCCCC---------------CccCCCcccHHHHHhhhhhcCCC
Q 024703 36 GSVSPWIGDIESMLMNDNDDN---------------SELEPNQQSLDDFFADVFVDQPS 79 (264)
Q Consensus 36 ~~~~~~~~eie~~lm~d~~~~---------------~~~~~~~~~~~~f~~~~~~d~~~ 79 (264)
||.-+..-.-|++|-+...+- .-.+++...|++||.+-|||--.
T Consensus 14 GS~~~~~~~~~~~~~~~~~E~~~D~~~s~~~~Ri~L~~~~~~~~~C~~F~~~EiV~~~~ 72 (1136)
T KOG4786|consen 14 GSKKYTHVDWEELLKNNGKERDEDRSKSGKKLRVNLDQLQHFNRKCDDFIDDEIVDDTT 72 (1136)
T ss_pred CCCCcchhcHHHHHhccCcccccccccchhheEeeHhhcccccccCcccccHHHhhhcc
Confidence 466666666666766433211 12577888999999999997544
No 253
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=36.72 E-value=63 Score=27.45 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q 024703 161 VKDLEMKSRYLESECRKLGRLL--HCVLAENQSLRFSL 196 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql--~~L~~EN~~LRqqL 196 (264)
+..|+..++.|+.+...|...+ ..|..+...|++.+
T Consensus 88 l~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~ 125 (169)
T PF07106_consen 88 LAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEI 125 (169)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3344444444444444443322 23344444444443
No 254
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=36.50 E-value=2.1e+02 Score=30.21 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhcC
Q 024703 164 LEMKSRYLESECRKLGRLLH----------CVLAENQSLRFSLQKGN 200 (264)
Q Consensus 164 LE~KVk~LE~EN~~L~~ql~----------~L~~EN~~LRqqLq~~~ 200 (264)
-|.+++.++.++..|+.++. ....|+..|.+-|-+.+
T Consensus 306 kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~ 352 (581)
T KOG0995|consen 306 KEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQ 352 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556667777766553 45677777777776554
No 255
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.45 E-value=2.1e+02 Score=31.80 Aligned_cols=14 Identities=21% Similarity=0.477 Sum_probs=7.3
Q ss_pred cHHHHHhh-hhhcCC
Q 024703 65 SLDDFFAD-VFVDQP 78 (264)
Q Consensus 65 ~~~~f~~~-~~~d~~ 78 (264)
.|++|+-+ .|.|-.
T Consensus 247 ~~dEfilam~liema 261 (1118)
T KOG1029|consen 247 SADEFILAMHLIEMA 261 (1118)
T ss_pred cHHHHHHHHHHHHHH
Confidence 46777543 344543
No 256
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.41 E-value=3.4e+02 Score=25.78 Aligned_cols=61 Identities=13% Similarity=0.034 Sum_probs=35.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 024703 142 RQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGAS 205 (264)
Q Consensus 142 RllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~~~g~~ 205 (264)
++..--.+.|+.+.+.+..+++||.++..+++.-.. ....++.+...||-........|..
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t---~~~~ie~~l~~l~~~aG~v~V~G~G 114 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLT---DDAALEDRLEKLRMLAGSVPVTGPG 114 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh---HHHHHHHHHHHHHHHhccCCCcCCc
Confidence 334444456677777777788888888777722222 2223334566677666655555533
No 257
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=36.37 E-value=70 Score=30.28 Aligned_cols=39 Identities=18% Similarity=0.118 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
.-+..|+.++..|.+++.+|+.+++.+.+++....+-+.
T Consensus 32 ~l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~ 70 (308)
T PF11382_consen 32 NLIDSLEDQFDSLREENDELRAELDALQAQLNAADQFIA 70 (308)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677888888888888888888888777776665543
No 258
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=36.33 E-value=3.2e+02 Score=24.74 Aligned_cols=50 Identities=18% Similarity=0.100 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Q 024703 147 RDAAVRSRERKKMYVKDLEMKS---RYLESECRKL------GRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 147 ReSAqrSRqRKKeYVeeLE~KV---k~LE~EN~~L------~~ql~~L~~EN~~LRqqL 196 (264)
|..|.++=+|||.|-..|+.-. -.|++.+..+ ...+..+..-|..|+..-
T Consensus 66 k~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~~aLk~g~~aLK~~~ 124 (191)
T PTZ00446 66 MSNAKILLKRKKLYEQEIENILNNRLTLEDNMINLENMHLHKIAVNALSYAANTHKKLN 124 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888888888887776633 3344433322 234455666666666554
No 259
>PRK09039 hypothetical protein; Validated
Probab=36.24 E-value=3e+02 Score=26.50 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 024703 170 YLESECRKLGRLLHCV 185 (264)
Q Consensus 170 ~LE~EN~~L~~ql~~L 185 (264)
..+.+...|+.++...
T Consensus 169 ~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 169 ESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444433
No 260
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=35.79 E-value=2.2e+02 Score=22.49 Aligned_cols=59 Identities=22% Similarity=0.081 Sum_probs=44.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHh
Q 024703 140 RRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRK-------LGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 140 ~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~-------L~~ql~~L~~EN~~LRqqLq~ 198 (264)
..++...+......=..|+.-+..||.++..|+.+... +.+....+..|+..|+.++.+
T Consensus 5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~K 70 (96)
T PF08647_consen 5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSK 70 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34666777777777777888888899988888877654 455667788899999888754
No 261
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=35.44 E-value=60 Score=28.83 Aligned_cols=19 Identities=21% Similarity=0.207 Sum_probs=2.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024703 178 LGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 178 L~~ql~~L~~EN~~LRqqL 196 (264)
|+..+|.|..|-..||+.|
T Consensus 29 L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 29 LREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444
No 262
>smart00340 HALZ homeobox associated leucin zipper.
Probab=35.40 E-value=70 Score=22.99 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 175 CRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 175 N~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
+.-|++=...|..||.+|+..++..
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eL 31 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQEL 31 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555554443
No 263
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=35.33 E-value=1.9e+02 Score=31.72 Aligned_cols=56 Identities=25% Similarity=0.235 Sum_probs=31.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 144 LRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 144 lRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
.+||.-.-..|+|-..|+..++.--..|...-+.+-++-+.++.||..|.++|+..
T Consensus 569 k~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaa 624 (961)
T KOG4673|consen 569 KENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAA 624 (961)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666555677777777776665444444443444444455555555555555543
No 264
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=35.31 E-value=1e+02 Score=27.34 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 172 ESECRKLGRLLHCVLAENQSLRFS 195 (264)
Q Consensus 172 E~EN~~L~~ql~~L~~EN~~LRqq 195 (264)
...|..|...+..+..+-..|+..
T Consensus 94 ~~~N~~L~~dl~klt~~~~~l~~e 117 (182)
T PF15035_consen 94 RKANEALQEDLQKLTQDWERLRDE 117 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444443333333333
No 265
>PF15556 Zwint: ZW10 interactor
Probab=35.18 E-value=3.2e+02 Score=25.82 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=12.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 145 RNRDAAVRSRERKKMYVKDLEMKSRYLE 172 (264)
Q Consensus 145 RNReSAqrSRqRKKeYVeeLE~KVk~LE 172 (264)
|.+++..+.|.-.|+|.-.-|..++.|.
T Consensus 113 KKqva~eK~r~AQkqwqlqQeK~LQ~La 140 (252)
T PF15556_consen 113 KKQVAMEKLRAAQKQWQLQQEKHLQHLA 140 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333
No 266
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=35.14 E-value=1e+02 Score=30.18 Aligned_cols=39 Identities=15% Similarity=-0.003 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHC---VLAENQSLRFSLQ 197 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~---L~~EN~~LRqqLq 197 (264)
.+...|..+.+.|.+||.+|+.++.. +..||..||..+.
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~~~e~l~~En~~Lr~ll~ 98 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLKSYEEANQTPPLFSEILS 98 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34467777777777777777655543 5577887776653
No 267
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.97 E-value=2.8e+02 Score=30.82 Aligned_cols=67 Identities=10% Similarity=0.049 Sum_probs=43.0
Q ss_pred CCCChhH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q 024703 131 NADDPIS-KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCV-------LAENQSLRFSLQ 197 (264)
Q Consensus 131 d~dd~ee-KR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L-------~~EN~~LRqqLq 197 (264)
++..+.. |-...+.++-..=.--+.+-.-.++.|.++.+.|+.++.+|+.+++.. ..++.-||.+|.
T Consensus 642 e~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 642 EEQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333433 333566666666666666666677788888888888888887777654 455555566665
No 268
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=34.95 E-value=1.8e+02 Score=25.09 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024703 175 CRKLGRLLHCVLAENQSLRFS 195 (264)
Q Consensus 175 N~~L~~ql~~L~~EN~~LRqq 195 (264)
..+-++++..|..||..||.=
T Consensus 77 l~~re~~i~rL~~ENe~lR~W 97 (135)
T TIGR03495 77 LAQREQRIERLKRENEDLRRW 97 (135)
T ss_pred HHHHHHHHHHHHHcCHHHHHH
Confidence 334467777888999999843
No 269
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=34.84 E-value=1.1e+02 Score=22.23 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024703 162 KDLEMKSRYLESECRKLGRLLH 183 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L~~ql~ 183 (264)
..|..++..|+.+.+.|+..+.
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs 23 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFS 23 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555554443
No 270
>PTZ00464 SNF-7-like protein; Provisional
Probab=34.74 E-value=3.6e+02 Score=24.60 Aligned_cols=20 Identities=25% Similarity=0.518 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024703 147 RDAAVRSRERKKMYVKDLEM 166 (264)
Q Consensus 147 ReSAqrSRqRKKeYVeeLE~ 166 (264)
|..|.++=+|||.|-..|+.
T Consensus 60 K~~Al~~LK~KK~~E~ql~~ 79 (211)
T PTZ00464 60 KQRAMQLLQQKRMYQNQQDM 79 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777888888775555
No 271
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=34.70 E-value=1.8e+02 Score=23.25 Aligned_cols=19 Identities=16% Similarity=0.097 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024703 165 EMKSRYLESECRKLGRLLH 183 (264)
Q Consensus 165 E~KVk~LE~EN~~L~~ql~ 183 (264)
+..++.|+.....++.++.
T Consensus 99 ~~~~~~l~~~l~~l~~~~~ 117 (126)
T TIGR00293 99 EKAIEKLQEALAELASRAQ 117 (126)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 272
>PRK14161 heat shock protein GrpE; Provisional
Probab=34.63 E-value=1.3e+02 Score=26.82 Aligned_cols=23 Identities=30% Similarity=0.257 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024703 171 LESECRKLGRLLHCVLAENQSLR 193 (264)
Q Consensus 171 LE~EN~~L~~ql~~L~~EN~~LR 193 (264)
|+.+..+++.++..+.+|...+|
T Consensus 31 l~~e~~elkd~~lR~~AefeN~r 53 (178)
T PRK14161 31 LKAEIEELKDKLIRTTAEIDNTR 53 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 273
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=34.63 E-value=4e+02 Score=25.19 Aligned_cols=38 Identities=18% Similarity=0.081 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
.-+.+|+.+++.++.++..+..+.+.+..+.+.+...+
T Consensus 230 ~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~ 267 (325)
T PF08317_consen 230 KELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIR 267 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555444
No 274
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=34.59 E-value=2.5e+02 Score=24.28 Aligned_cols=35 Identities=20% Similarity=0.082 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 163 DLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 163 eLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
+||..+..+..++..+++.+..+..+...|+..+.
T Consensus 43 ~lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 77 (151)
T PF14584_consen 43 NLEDLLNELFDQIDELKEELEELEKRIEELEEKLR 77 (151)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888888888888888888888888888877765
No 275
>PRK11239 hypothetical protein; Provisional
Probab=34.53 E-value=68 Score=29.77 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 162 KDLEMKSRYLESECRKLGRLLHCVLA 187 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L~~ql~~L~~ 187 (264)
..||.+|..|+++...|+.+++.+..
T Consensus 186 ~~Le~rv~~Le~eva~L~~~l~~l~~ 211 (215)
T PRK11239 186 GDLQARVEALEIEVAELKQRLDSLLA 211 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55888888888888888877777654
No 276
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=34.39 E-value=3e+02 Score=28.84 Aligned_cols=39 Identities=21% Similarity=0.141 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
.-...|+.++..|+.++.+|+..+.....++..|+++..
T Consensus 157 ~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~k 195 (546)
T PF07888_consen 157 KENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQK 195 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666666666666666665555543
No 277
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=34.21 E-value=4.3e+02 Score=25.96 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024703 176 RKLGRLLHCVLAENQSLRFSLQKGNA 201 (264)
Q Consensus 176 ~~L~~ql~~L~~EN~~LRqqLq~~~~ 201 (264)
..+...+..+..+....|+++...+.
T Consensus 297 ~~~t~~L~~IseeLe~vK~emeerg~ 322 (359)
T PF10498_consen 297 SERTRELAEISEELEQVKQEMEERGS 322 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455566666777777777766543
No 278
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=33.86 E-value=3.8e+02 Score=24.66 Aligned_cols=35 Identities=14% Similarity=0.107 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 163 DLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 163 eLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
.+..+.+.+..+...|+.++..++.+-..+++.+.
T Consensus 132 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 166 (301)
T PF14362_consen 132 SFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQ 166 (301)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666665554
No 279
>COG4420 Predicted membrane protein [Function unknown]
Probab=33.81 E-value=2.1e+02 Score=26.29 Aligned_cols=59 Identities=22% Similarity=0.124 Sum_probs=37.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024703 143 QLRNRDAAVRSRERKKMYVKDLEM--KSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNA 201 (264)
Q Consensus 143 llRNReSAqrSRqRKKeYVeeLE~--KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~~ 201 (264)
|-.||++++---.-+..|--.|.. .+..|..+...|...+..+..|+..||+.+.....
T Consensus 109 mSQNRQa~rDr~~a~~d~qvnlkaE~e~~~l~~kLd~lr~~lg~~~~~l~~lre~l~~i~~ 169 (191)
T COG4420 109 MSQNRQAERDRLRAELDYQVNLKAEQEVAALHEKLDELRLDLGYVRDELDDLRELLAEIEP 169 (191)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhchHHHHHHHHHhCc
Confidence 457777665443334445444443 45566677777777777777888888888876543
No 280
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=33.72 E-value=4e+02 Score=25.04 Aligned_cols=54 Identities=11% Similarity=0.053 Sum_probs=26.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 142 RQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 142 RllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
+..++|+-+...++|.++--..|.. ++.-+......++.-+.+|+.+++.....
T Consensus 99 ~~~~~req~~~~~~K~~e~~~ql~k----e~a~~~~nrk~~~~~E~~nrka~~~~~~~ 152 (233)
T KOG4739|consen 99 QLEKDREQTAYFEKKTQEETQQLSK----EEAFIENNRKKLQASELENRKAERLISAL 152 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhchhhh
Confidence 3444444444444444332222222 23333344556666677777777765443
No 281
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=33.56 E-value=2.8e+02 Score=23.41 Aligned_cols=40 Identities=18% Similarity=0.045 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
.|-+|..-+..|.+.....++.--.|..||+.|-|-+.+.
T Consensus 64 QVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNL 103 (120)
T KOG3650|consen 64 QVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENL 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 3445555555555555555555555667777777766543
No 282
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=33.47 E-value=2.2e+02 Score=21.90 Aligned_cols=37 Identities=19% Similarity=0.160 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
.+|........+++..|..++..|......|-.++.+
T Consensus 31 ~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~r 67 (70)
T PF04899_consen 31 ADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLER 67 (70)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555556666666666666555555555443
No 283
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=33.29 E-value=1.1e+02 Score=25.46 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024703 176 RKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 176 ~~L~~ql~~L~~EN~~LRqqL 196 (264)
.+|+++.+.|++||..||-++
T Consensus 75 ~rlkkk~~~LeEENNlLklKi 95 (108)
T cd07429 75 LRLKKKNQQLEEENNLLKLKI 95 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666665543
No 284
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=33.17 E-value=1.5e+02 Score=26.34 Aligned_cols=13 Identities=31% Similarity=0.360 Sum_probs=7.7
Q ss_pred ccccccccccccc
Q 024703 250 CGIVFNALNFGSF 262 (264)
Q Consensus 250 ~~~~~n~~~~~~~ 262 (264)
.+-++=.|.|||.
T Consensus 183 ~~~~~G~LalGS~ 195 (225)
T PF04340_consen 183 SGRPIGLLALGSR 195 (225)
T ss_dssp SSSEEEEEEEEES
T ss_pred CCCceEEEEecCC
Confidence 4445566777763
No 285
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=33.16 E-value=71 Score=29.04 Aligned_cols=40 Identities=23% Similarity=0.123 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~ 200 (264)
...||.....|..+...|......|+.|+..|+..+....
T Consensus 107 ~kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~ 146 (198)
T KOG0483|consen 107 TKQLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLK 146 (198)
T ss_pred chhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhh
Confidence 4578888888888888888888888888988888887543
No 286
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=33.07 E-value=1.2e+02 Score=25.47 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 162 KDLEMKSRYLESECRKLGRLLHCV 185 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L~~ql~~L 185 (264)
+.++.++..|+.+..+|..+++.+
T Consensus 108 ~~~~~~l~~L~~~i~~L~~~~~~~ 131 (134)
T PF07047_consen 108 EELQERLEELEERIEELEEQVEKQ 131 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666544
No 287
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=33.04 E-value=1.8e+02 Score=25.22 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
++|+.-.+.++....+|..++..+..+++.+-++.
T Consensus 104 ~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~ 138 (145)
T COG1730 104 EELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQ 138 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566666666666666666655544
No 288
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=32.92 E-value=2.4e+02 Score=25.34 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
+++..|+.+...|+.++..|..+...+...-..|-..+-.
T Consensus 111 ~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~r 150 (170)
T PRK13923 111 EQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIMNR 150 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666667777777777777777776666666666555543
No 289
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=32.84 E-value=1.3e+02 Score=25.86 Aligned_cols=42 Identities=19% Similarity=0.108 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 158 KMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 158 KeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
-..+.++...++.++....+|+.++..-..|...||.+|...
T Consensus 79 ~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~ 120 (131)
T PF04859_consen 79 AAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDEL 120 (131)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788888888888999999998889999999888653
No 290
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=32.67 E-value=67 Score=34.92 Aligned_cols=76 Identities=14% Similarity=0.172 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH--HHHHH-hcCCCCCccCccchhhHhhhc
Q 024703 148 DAAVRSRERKKMYVKDLEMKSRYLE------SECRKLGRLLHCVLAENQSL--RFSLQ-KGNAYGASLTKQESAVLLLGM 218 (264)
Q Consensus 148 eSAqrSRqRKKeYVeeLE~KVk~LE------~EN~~L~~ql~~L~~EN~~L--RqqLq-~~~~~g~~t~~qesAvL~~~s 218 (264)
++-+|-|.+--.||++|-.-|-.-- .++.-|+..+++|+.-+..= +.... ...+ .-.+.++-.-||++.
T Consensus 26 ~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~~~~~~~~~~d~Kp--SflS~~eL~~LmLeA 103 (803)
T KOG3561|consen 26 EIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQESENSSIDQDYKP--SFLSNDELTHLILEA 103 (803)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhhhcccccccccccc--cccchHHHHHHHHHH
Confidence 3444555566678888877654322 12334555555444332210 00000 0000 113456667788888
Q ss_pred ccccccc
Q 024703 219 IHELSFP 225 (264)
Q Consensus 219 L~~~s~p 225 (264)
|..++|-
T Consensus 104 lDGF~fv 110 (803)
T KOG3561|consen 104 LDGFLFV 110 (803)
T ss_pred hcCeEEE
Confidence 8777664
No 291
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=32.56 E-value=1.1e+02 Score=32.98 Aligned_cols=45 Identities=29% Similarity=0.268 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcC
Q 024703 155 ERKKMYVKDLEMKSRYLESECR----KLGRLLHCVLAENQSLRFSLQKGN 200 (264)
Q Consensus 155 qRKKeYVeeLE~KVk~LE~EN~----~L~~ql~~L~~EN~~LRqqLq~~~ 200 (264)
+-||.|+ .++.++..|+.|.- +.++.+..|..||..||+.|....
T Consensus 223 E~~K~~v-s~~e~i~~LQeE~l~tQ~kYQreLErlEKENkeLr~lll~kd 271 (980)
T KOG0447|consen 223 EQQKRKV-SDKEKIDQLQEELLHTQLKYQRILERLEKENKELRKLVLQKD 271 (980)
T ss_pred HHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhcc
Confidence 3334443 35567777766643 335677889999999996654433
No 292
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=32.45 E-value=1.1e+02 Score=24.24 Aligned_cols=30 Identities=27% Similarity=0.320 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 170 YLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 170 ~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
.+..+..+|...++.+..+|..|.++|...
T Consensus 77 ~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~ 106 (109)
T PF03980_consen 77 YKKKEREQLNARLQELEEENEALAEEIQEQ 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566778888888888888888887643
No 293
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=32.43 E-value=2.9e+02 Score=26.13 Aligned_cols=22 Identities=14% Similarity=0.176 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 024703 178 LGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 178 L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
....++.|..-|+.||.||...
T Consensus 233 ~~eei~fLk~tN~qLKaQLegI 254 (259)
T KOG4001|consen 233 MKEEIEFLKETNRQLKAQLEGI 254 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3455667778888888888643
No 294
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=32.42 E-value=2.1e+02 Score=23.97 Aligned_cols=20 Identities=15% Similarity=0.039 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024703 153 SRERKKMYVKDLEMKSRYLE 172 (264)
Q Consensus 153 SRqRKKeYVeeLE~KVk~LE 172 (264)
||.-....+..|+..+..+.
T Consensus 10 s~~el~n~La~Le~slE~~K 29 (107)
T PF09304_consen 10 SQNELQNRLASLERSLEDEK 29 (107)
T ss_dssp ----HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333
No 295
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]
Probab=32.39 E-value=3.3e+02 Score=27.36 Aligned_cols=15 Identities=33% Similarity=0.425 Sum_probs=11.1
Q ss_pred chhHHHHHhhhcchh
Q 024703 232 NVELFIIVELNSPLI 246 (264)
Q Consensus 232 ~~~l~~~~~l~~~~~ 246 (264)
.+--|+||++++|-|
T Consensus 207 ~~~v~tIrGl~lp~~ 221 (377)
T KOG2896|consen 207 CHLVFTIRGLKLPFI 221 (377)
T ss_pred chhhhhhhcccCCch
Confidence 455588888888865
No 296
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=32.29 E-value=1.3e+02 Score=26.11 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=28.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLH 183 (264)
Q Consensus 138 KR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~ 183 (264)
....++.++.+.=.++++.-.+-+.+|..+...+.++++++..+.+
T Consensus 94 eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~ 139 (145)
T COG1730 94 EAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQA 139 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445565565555666666666677777777777777666665543
No 297
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=32.26 E-value=2.3e+02 Score=24.85 Aligned_cols=16 Identities=38% Similarity=0.470 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 024703 164 LEMKSRYLESECRKLG 179 (264)
Q Consensus 164 LE~KVk~LE~EN~~L~ 179 (264)
|..++..|+.+|.+|.
T Consensus 94 L~~~v~~Le~e~r~L~ 109 (158)
T PF09744_consen 94 LQSQVEQLEEENRQLE 109 (158)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444444
No 298
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=32.23 E-value=3.3e+02 Score=23.38 Aligned_cols=43 Identities=23% Similarity=0.191 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYG 203 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~~~g 203 (264)
+.-+|.++-...+.++.|+..+.....+.+.|++.+......|
T Consensus 92 ~~~~e~~i~~~~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~~~C 134 (146)
T PF08702_consen 92 IYILETKIINQPSNIRVLQNILRSNRQKIQRLEQDIDQQERYC 134 (146)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6777777777888888999999999999999998876655555
No 299
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.10 E-value=1.3e+02 Score=28.10 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=19.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Q 024703 142 RQLRNRDAAVRSRERKKMYVKDLEM 166 (264)
Q Consensus 142 RllRNReSAqrSRqRKKeYVeeLE~ 166 (264)
-.-+|+.+|-+|=+|||.|=++|..
T Consensus 55 ~~tkNKR~AlqaLkrKK~~E~qL~q 79 (221)
T KOG1656|consen 55 YGTKNKRMALQALKRKKRYEKQLAQ 79 (221)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3457999999999999998776654
No 300
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=32.00 E-value=1.5e+02 Score=27.11 Aligned_cols=34 Identities=32% Similarity=0.276 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLR 193 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LR 193 (264)
-+++|-.-++.|+.+++.|..+..++..||+.|-
T Consensus 68 EledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~ 101 (193)
T PF14662_consen 68 ELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLV 101 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555544444444444443
No 301
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.94 E-value=2.1e+02 Score=27.06 Aligned_cols=56 Identities=20% Similarity=0.264 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCccCccchhhHh
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCVL----AENQSLRFSLQKGNAYGASLTKQESAVLL 215 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L~----~EN~~LRqqLq~~~~~g~~t~~qesAvL~ 215 (264)
-+..+++++.+|..|...|+..+.... +-+..|-.+|......--.+..+.+++.+
T Consensus 58 e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~aG~v~V~G~Gl~I 117 (247)
T COG3879 58 ELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRMLAGSVPVTGPGLVI 117 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHhccCCCcCCcEEE
Confidence 344566666666677777766666665 44555555555443322234445556543
No 302
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=31.79 E-value=3.3e+02 Score=24.88 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 148 DAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 148 eSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
...+....+...-+..+...+..+....+.|+..+..+...|..|..++.
T Consensus 198 ~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~ 247 (312)
T PF00038_consen 198 EELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLR 247 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHH
No 303
>PHA00728 hypothetical protein
Probab=31.75 E-value=34 Score=29.67 Aligned_cols=68 Identities=21% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCccCccchhhHhhhccccccccccccccchhHHHHHhhhcc--hhhhccccccccc
Q 024703 180 RLLHCVLAENQSLRFSLQKGNAYGASLTKQESAVLLLGMIHELSFPHILGSWNVELFIIVELNSP--LIQYQCGIVFNAL 257 (264)
Q Consensus 180 ~ql~~L~~EN~~LRqqLq~~~~~g~~t~~qesAvL~~~sL~~~s~pw~~~~~~~~l~~~~~l~~~--~~~~~~~~~~n~~ 257 (264)
..+.+|..||..||..|+...+.-....+.+ -.-++..--|+.++.- .|+.|+.| +|||-+|.-+-.+
T Consensus 5 teveql~keneelkkkla~leal~nn~~~~~-----~e~lqEiEnPYTVTNR-----aIsElV~PkDTMfYLsgnqisLI 74 (151)
T PHA00728 5 TEVEQLKKENEELKKKLAELEALMNNESAEE-----DEELQEIENPYTVTNR-----AISELVEPKDTMFYLSGNQISLI 74 (151)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHcCCCchh-----hhhHHHhcCCceehhH-----HHHHhcCCccceEEecCCchhhH
No 304
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=31.72 E-value=1e+02 Score=22.35 Aligned_cols=29 Identities=10% Similarity=0.130 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 158 KMYVKDLEMKSRYLESECRKLGRLLHCVL 186 (264)
Q Consensus 158 KeYVeeLE~KVk~LE~EN~~L~~ql~~L~ 186 (264)
+++-...|.|+..+.+++..|+++-+.|.
T Consensus 11 qe~~d~IEqkiedid~qIaeLe~KR~~Lv 39 (46)
T PF08946_consen 11 QEHYDNIEQKIEDIDEQIAELEAKRQRLV 39 (46)
T ss_dssp ----THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHhHHHHHHHHHHHHHHHHHHH
Confidence 35667889999999888888887755444
No 305
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=31.72 E-value=4.7e+02 Score=25.09 Aligned_cols=17 Identities=41% Similarity=0.382 Sum_probs=12.4
Q ss_pred CCCCCCCcHHHHHHhhc
Q 024703 34 PDGSVSPWIGDIESMLM 50 (264)
Q Consensus 34 p~~~~~~~~~eie~~lm 50 (264)
|+-|-+-.+.+|+.+=+
T Consensus 52 ~~~s~sftl~~~~~~~~ 68 (269)
T PF05278_consen 52 PDESQSFTLSEIECMKG 68 (269)
T ss_pred CCcCccccHHHHHHHhc
Confidence 45455566899999877
No 306
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=31.68 E-value=1.6e+02 Score=24.21 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 157 KKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 157 KKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
+..+++.|-.+.+.|+.+...|..++..+...-..++..+.
T Consensus 4 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e 44 (140)
T PRK03947 4 SEQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKE 44 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888888888887777777666665555543
No 307
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=31.53 E-value=1.9e+02 Score=22.21 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHCVLA 187 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~L~~ 187 (264)
++.++.+...++.+|.+|+-++..+..
T Consensus 44 l~~l~~~~~~l~~e~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 666777777777777777666665543
No 308
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=31.52 E-value=1.6e+02 Score=22.74 Aligned_cols=31 Identities=19% Similarity=0.056 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 169 RYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 169 k~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
+.+..+|.+|+-.+..+..|++.++..|...
T Consensus 39 ~~~~keNieLKve~~~L~~el~~~~~~l~~a 69 (75)
T PF07989_consen 39 EELLKENIELKVEVESLKRELQEKKKLLKEA 69 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777777777543
No 309
>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins. The eukaryotic flagellum represents one of the most complex macromolecular structures found in any organism and contains more than 250 proteins []. In addition to its locomotive role, the flagellum is probably involved in nutrient uptake since receptors for host low-density lipoproteins are localised on the flagellar membrane as well as on the flagellar pocket membrane [].; GO: 0005516 calmodulin binding, 0009434 microtubule-based flagellum
Probab=31.42 E-value=1.9e+02 Score=27.88 Aligned_cols=76 Identities=18% Similarity=0.010 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCcc
Q 024703 148 DAAVRSRERKKMYVKDLEMKSRY------------------LESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASLTKQ 209 (264)
Q Consensus 148 eSAqrSRqRKKeYVeeLE~KVk~------------------LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~~~g~~t~~q 209 (264)
-++-.-|-||-.++++|+.+++. +..++..|..+.+.+..+...|++........-.| .
T Consensus 176 ~a~gel~~KKe~rle~l~~~iR~~~~~~E~ameTlDPnAk~y~~~~~dl~~~~~ev~~~I~~l~~~~~~~~~~f~p---t 252 (289)
T PF05149_consen 176 LALGELRYKKERRLEELDRQIRSTHLQQERAMETLDPNAKKYSKEKKDLLEQREEVEQEINLLRDKQAKALEDFEP---T 252 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch---H
Confidence 36667777888888888877654 34456677788888888888888776543222112 1
Q ss_pred chhhHhhhcccccccccc
Q 024703 210 ESAVLLLGMIHELSFPHI 227 (264)
Q Consensus 210 esAvL~~~sL~~~s~pw~ 227 (264)
+-+++ .++++.++|.=.
T Consensus 253 e~~ll-~agv~fvHP~~e 269 (289)
T PF05149_consen 253 EQLLL-AAGVEFVHPVEE 269 (289)
T ss_pred HHHHH-HcCCCCCCHHHH
Confidence 22333 566665555433
No 310
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=31.21 E-value=58 Score=33.88 Aligned_cols=17 Identities=12% Similarity=-0.070 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhcCCCC
Q 024703 187 AENQSLRFSLQKGNAYG 203 (264)
Q Consensus 187 ~EN~~LRqqLq~~~~~g 203 (264)
..-..|+..+.+..+..
T Consensus 261 ~~~~~L~~eV~rl~~~~ 277 (622)
T PF02724_consen 261 RYVPLLQDEVSRLNPSN 277 (622)
T ss_pred HHHHHHHHHHHhcCCcc
Confidence 44566777776665543
No 311
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=31.07 E-value=1.3e+02 Score=23.48 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 163 DLEMKSRYLESECRKLGRLLHCVLA 187 (264)
Q Consensus 163 eLE~KVk~LE~EN~~L~~ql~~L~~ 187 (264)
.|+.+...++.+...++.++..+..
T Consensus 88 ~l~~~~~~l~~~~~~~~~~~~~~~~ 112 (120)
T PF02996_consen 88 ELEEQLEKLEKELAELQAQIEQLEQ 112 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 312
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=31.03 E-value=2e+02 Score=25.54 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 024703 155 ERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (264)
Q Consensus 155 qRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~ 200 (264)
..+|.||..||..++.+......|..+-..|..--..+=..+...+
T Consensus 7 ~~~k~~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L~ 52 (216)
T cd07627 7 IEKKQYLDSLESQLKQLYKSLELVSSQRKELASATEEFAETLEALS 52 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 313
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=31.02 E-value=4.9e+02 Score=26.84 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=32.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 143 QLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLR 193 (264)
Q Consensus 143 llRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LR 193 (264)
..+|..+|+.--.|-.+.-.+|..+++.|-.+-.+|..+.+.|.++-..|.
T Consensus 128 a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 128 ARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666777777766666666666666666555554
No 314
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=30.92 E-value=71 Score=22.82 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024703 174 ECRKLGRLLHCVLAENQSL 192 (264)
Q Consensus 174 EN~~L~~ql~~L~~EN~~L 192 (264)
++.+++++++.++.|+..|
T Consensus 49 ~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 49 RIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3344444444444444444
No 315
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=30.86 E-value=1.5e+02 Score=29.11 Aligned_cols=37 Identities=24% Similarity=0.226 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
+.+|+.++..++.|.+.+++.|...+.-|.-|...|-
T Consensus 184 ~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLd 220 (323)
T PF08537_consen 184 IDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLD 220 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678888888888888888888888888888887774
No 316
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=30.81 E-value=1.3e+02 Score=27.48 Aligned_cols=38 Identities=32% Similarity=0.419 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHC-------VLAENQSLRFSLQ 197 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~-------L~~EN~~LRqqLq 197 (264)
-|++|+.--+.|..+|..|+..+.. |.+|+..||.++.
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~ 53 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLK 53 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777766654 4444555555544
No 317
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=30.35 E-value=4.1e+02 Score=27.33 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024703 158 KMYVKDLEMKSRYLESECRKLGR 180 (264)
Q Consensus 158 KeYVeeLE~KVk~LE~EN~~L~~ 180 (264)
++.+..+|..++.|+.||.+|..
T Consensus 47 ~a~~~~~E~~l~~Lq~e~~~l~e 69 (459)
T KOG0288|consen 47 KAKLQEKELELNRLQEENTQLNE 69 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888888888877643
No 318
>PRK09343 prefoldin subunit beta; Provisional
Probab=30.20 E-value=3.1e+02 Score=22.53 Aligned_cols=44 Identities=18% Similarity=0.171 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 024703 157 KKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (264)
Q Consensus 157 KKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~ 200 (264)
|-+-..+|+.++..++.++..|..+...+......++..|...-
T Consensus 69 ~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 69 KTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556788888888898899999888888888887777776543
No 319
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=30.14 E-value=1.1e+02 Score=31.67 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 174 ECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 174 EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
+++.|+.+++.|+.+..+||.+|...
T Consensus 26 ~i~~L~~ql~aLq~~v~eL~~~laa~ 51 (514)
T PF11336_consen 26 QIKALQAQLQALQDQVNELRAKLAAK 51 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56677778888888888888887653
No 320
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=30.13 E-value=4.1e+02 Score=23.90 Aligned_cols=6 Identities=33% Similarity=0.490 Sum_probs=4.0
Q ss_pred hcCCCC
Q 024703 75 VDQPSP 80 (264)
Q Consensus 75 ~d~~~~ 80 (264)
-|+|-+
T Consensus 58 CDC~DG 63 (176)
T PF12999_consen 58 CDCPDG 63 (176)
T ss_pred eeCCCC
Confidence 788843
No 321
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=29.98 E-value=1.7e+02 Score=22.95 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024703 162 KDLEMKSRYLESECRKLGRLLHC 184 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L~~ql~~ 184 (264)
+.|+.+++.++.+...+...+++
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~l~~ 116 (120)
T PF02996_consen 94 EKLEKELAELQAQIEQLEQTLQQ 116 (120)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 322
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=29.93 E-value=5.3e+02 Score=25.14 Aligned_cols=50 Identities=18% Similarity=0.250 Sum_probs=27.5
Q ss_pred hHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 136 ISKKRRRQL---RNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCV 185 (264)
Q Consensus 136 eeKR~rRll---RNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L 185 (264)
..||..|+. |-|+-.++-++-=---++.||.+.++|..+..+|.+.|+.|
T Consensus 229 ~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~yl 281 (294)
T KOG4571|consen 229 RRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYL 281 (294)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445554 55554444444444455566666666666666666655544
No 323
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=29.79 E-value=2.3e+02 Score=26.03 Aligned_cols=53 Identities=15% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccC
Q 024703 155 ERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASLT 207 (264)
Q Consensus 155 qRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~~~g~~t~ 207 (264)
..|+.||..||.+++.|......|-.+-..|..--..+-.-+..++....+++
T Consensus 25 ~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~E~~~~ 77 (234)
T cd07664 25 EEKQQQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLGNSEDHTA 77 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccch
No 324
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=29.63 E-value=3.9e+02 Score=25.88 Aligned_cols=69 Identities=14% Similarity=0.114 Sum_probs=41.9
Q ss_pred CCCCCCCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 127 TDNDNADDPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 127 ~ee~d~dd~eeKR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
++-..+.+.+...+.|+.|-|.--+. .-.|-+...|+ ++++||.....|..+...|..+...||.++..
T Consensus 191 ~~pispid~e~qe~~kleRkrlrnre--aa~Kcr~rkLd-risrLEdkv~~lk~~n~~L~~~l~~l~~~v~e 259 (279)
T KOG0837|consen 191 KEPISPIDMEDQEKIKLERKRLRNRE--AASKCRKRKLD-RISRLEDKVKTLKIYNRDLASELSKLKEQVAE 259 (279)
T ss_pred CCCCCcccchhHHHHHHHHHHhhhHH--HHHHHHHHHHH-HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 34445677777777777766532221 22223334444 56677777777777777777777777776643
No 325
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=29.41 E-value=1.8e+02 Score=30.44 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Q 024703 179 GRLLHCVLAENQSLRFSLQKGNA 201 (264)
Q Consensus 179 ~~ql~~L~~EN~~LRqqLq~~~~ 201 (264)
+..+..|.+||..|+.++.....
T Consensus 565 ~~~l~~L~~En~~L~~~l~~le~ 587 (722)
T PF05557_consen 565 KSTLEALQAENEDLLARLRSLEE 587 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 35667899999999999966543
No 326
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=29.18 E-value=1.4e+02 Score=20.19 Aligned_cols=26 Identities=12% Similarity=-0.003 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024703 178 LGRLLHCVLAENQSLRFSLQKGNAYG 203 (264)
Q Consensus 178 L~~ql~~L~~EN~~LRqqLq~~~~~g 203 (264)
|.....+|......|+.+|.....+|
T Consensus 6 L~sekeqLrrr~eqLK~kLeqlrnS~ 31 (32)
T PF02344_consen 6 LISEKEQLRRRREQLKHKLEQLRNSC 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33344444455555555555444433
No 327
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=29.12 E-value=1.9e+02 Score=27.71 Aligned_cols=30 Identities=30% Similarity=0.246 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 170 YLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 170 ~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
.++.+...++.++..|..||..|...+...
T Consensus 160 ele~e~ee~~erlk~le~E~s~LeE~~~~l 189 (290)
T COG4026 160 ELEAEYEEVQERLKRLEVENSRLEEMLKKL 189 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445555666666677777666655443
No 328
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=29.05 E-value=1.3e+02 Score=30.21 Aligned_cols=33 Identities=24% Similarity=0.150 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 155 ERKKMYVKDLEMKSRYLESECRKLGRLLHCVLA 187 (264)
Q Consensus 155 qRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~ 187 (264)
.|.|...+.||.-+..++.||++|+.+++.+..
T Consensus 123 ~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~ 155 (401)
T PF06785_consen 123 MKTKGDIQHLEGLIRHLREENQCLQLQLDALQQ 155 (401)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 455677788899899999999988887776554
No 329
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=29.01 E-value=2.3e+02 Score=20.74 Aligned_cols=49 Identities=18% Similarity=0.178 Sum_probs=24.1
Q ss_pred HHHHHHHHhHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 138 KKRRRQLRNRDAAVRSRE---RKKM-YVKDLEMKSRYLESECRKLGRLLHCVL 186 (264)
Q Consensus 138 KR~rRllRNReSAqrSRq---RKKe-YVeeLE~KVk~LE~EN~~L~~ql~~L~ 186 (264)
++..+=.+-|+.|..-++ ..+. -....+.++......+..|+.+|..+.
T Consensus 8 ~~i~~E~ki~~Gae~m~~~~~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~ 60 (70)
T PF02185_consen 8 KKIDKELKIKEGAENMLQAYSTDKKKVLSEAESQLRESNQKIELLREQLEKLQ 60 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444566666666655 1222 244555555555555555555544443
No 330
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=28.84 E-value=4.8e+02 Score=24.23 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 155 ERKKMYVKDLEMKSRYLESECRKLGRLLH 183 (264)
Q Consensus 155 qRKKeYVeeLE~KVk~LE~EN~~L~~ql~ 183 (264)
+..+.....|+.+.+.++....+|.+++.
T Consensus 225 e~~~~~~~~le~~~~~~ee~~~~L~ekme 253 (297)
T PF02841_consen 225 EKQKEQEQMLEQQERSYEEHIKQLKEKME 253 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666677777777777665554
No 331
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=28.80 E-value=5.1e+02 Score=25.52 Aligned_cols=33 Identities=18% Similarity=0.240 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 167 KSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 167 KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
+.+.+.....+|.+++..+..+...|+..+...
T Consensus 376 ~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 376 QLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455556677777777777777888777765
No 332
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=28.74 E-value=22 Score=28.38 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~ 200 (264)
..+..|..++..|..++..|+.++..+......|++.|....
T Consensus 32 ~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq 73 (131)
T PF05103_consen 32 EELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQ 73 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCT-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhh
Confidence 445667777777777777777777777777777777764433
No 333
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=28.59 E-value=3.2e+02 Score=27.71 Aligned_cols=26 Identities=12% Similarity=0.055 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024703 176 RKLGRLLHCVLAENQSLRFSLQKGNA 201 (264)
Q Consensus 176 ~~L~~ql~~L~~EN~~LRqqLq~~~~ 201 (264)
..|....+.|...++.|+.++..+..
T Consensus 300 k~le~~n~~L~~rieeLk~~~~~~~~ 325 (411)
T KOG1318|consen 300 KKLESTNQELALRIEELKSEAGRHGL 325 (411)
T ss_pred hHHHhHHHHHHHHHHHHHHHHHHhcC
Confidence 44556666777777777777766543
No 334
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=28.48 E-value=2.8e+02 Score=21.39 Aligned_cols=16 Identities=25% Similarity=0.183 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 024703 163 DLEMKSRYLESECRKL 178 (264)
Q Consensus 163 eLE~KVk~LE~EN~~L 178 (264)
+.|..+..|..||-.|
T Consensus 4 Eqe~~i~~L~KENF~L 19 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNL 19 (75)
T ss_pred HHHHHHHHHHHhhhhH
Confidence 3344444444444333
No 335
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=28.46 E-value=5e+02 Score=24.36 Aligned_cols=17 Identities=41% Similarity=0.448 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLESECR 176 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~ 176 (264)
-+++|+.++..++.+.+
T Consensus 53 e~e~le~qv~~~e~ei~ 69 (239)
T COG1579 53 ELEDLENQVSQLESEIQ 69 (239)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444443333
No 336
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=28.40 E-value=5.6e+02 Score=25.34 Aligned_cols=40 Identities=30% Similarity=0.254 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 024703 153 SRERKKMYVKDLEMKSRYLESECRKL---GRLLHCVLAENQSL 192 (264)
Q Consensus 153 SRqRKKeYVeeLE~KVk~LE~EN~~L---~~ql~~L~~EN~~L 192 (264)
.-.|=|..-+.+|.|++.|+.+|.-+ +..++.-..|.+.|
T Consensus 27 ~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~qyrecqel 69 (328)
T PF15369_consen 27 TEERLKAEQESFEKKIRQLEEQNELIIKEREDLQQQYRECQEL 69 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33445566678888999988887644 23344444555554
No 337
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=28.29 E-value=3.7e+02 Score=22.79 Aligned_cols=57 Identities=23% Similarity=0.247 Sum_probs=43.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCCC
Q 024703 145 RNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVL---AENQSLRFSLQKGNAYG 203 (264)
Q Consensus 145 RNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~---~EN~~LRqqLq~~~~~g 203 (264)
+-=+.+..||..--..+.+|..++..||.....|+..+.... .+.. |++|+-.+..|
T Consensus 26 ~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVsemKpVT~dV~--rwklmG~GaLg 85 (112)
T PF07439_consen 26 RSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVSEMKPVTDDVK--RWKLMGMGALG 85 (112)
T ss_pred HHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhccchHHHHH--HHHHhccchhh
Confidence 444556678888888999999999999999988988776532 3333 88988776666
No 338
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=28.19 E-value=3.2e+02 Score=23.49 Aligned_cols=24 Identities=33% Similarity=0.270 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 176 RKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 176 ~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
.+|++++..+.+|.+.+++.+...
T Consensus 69 aKl~Rk~~kl~~el~~~~~~~~~~ 92 (161)
T PF04420_consen 69 AKLNRKLDKLEEELEKLNKSLSSE 92 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777777777776543
No 339
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=28.13 E-value=4.1e+02 Score=23.20 Aligned_cols=18 Identities=17% Similarity=0.062 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024703 178 LGRLLHCVLAENQSLRFS 195 (264)
Q Consensus 178 L~~ql~~L~~EN~~LRqq 195 (264)
|+-.+..|.-++..+..+
T Consensus 149 l~DE~~~L~l~~~~~e~k 166 (194)
T PF08614_consen 149 LQDELQALQLQLNMLEEK 166 (194)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 340
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=28.07 E-value=2.5e+02 Score=20.66 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESEC--------RKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN--------~~L~~ql~~L~~EN~~LRqqLq 197 (264)
.++++.+.-+.+|+-|. ..+..++.....+...|+..|.
T Consensus 32 ~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 32 RDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555555555555543 4566777777777777777664
No 341
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=27.98 E-value=3.8e+02 Score=24.62 Aligned_cols=15 Identities=0% Similarity=0.313 Sum_probs=10.9
Q ss_pred CCCCcHHHHHHhhcc
Q 024703 37 SVSPWIGDIESMLMN 51 (264)
Q Consensus 37 ~~~~~~~eie~~lm~ 51 (264)
+...-+.|+++|+-.
T Consensus 23 ~~~g~vaEL~qli~~ 37 (192)
T PF11180_consen 23 AAQGNVAELQQLIQD 37 (192)
T ss_pred cCcccHHHHHHHHHc
Confidence 445678999987754
No 342
>KOG2829 consensus E2F-like protein [Transcription]
Probab=27.94 E-value=1.5e+02 Score=29.04 Aligned_cols=18 Identities=11% Similarity=0.204 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024703 155 ERKKMYVKDLEMKSRYLE 172 (264)
Q Consensus 155 qRKKeYVeeLE~KVk~LE 172 (264)
++|++|+++|..++..++
T Consensus 149 ~kK~a~lqEl~~q~~~fk 166 (326)
T KOG2829|consen 149 KKKAAQLQELIEQVSAFK 166 (326)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 567788888887774443
No 343
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=27.89 E-value=1.9e+02 Score=25.40 Aligned_cols=44 Identities=11% Similarity=0.007 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 156 RKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 156 RKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
.-++|+..|+.++..++..+.+|.++...+...-..+-..+...
T Consensus 18 e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~l 61 (200)
T cd07624 18 KMNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLW 61 (200)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35699999999999999999999888877777777776666554
No 344
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=27.78 E-value=2.2e+02 Score=22.48 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSL 192 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~L 192 (264)
.+++.|+.+++.++.+...+..++..+..+...|
T Consensus 70 ~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 70 ERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666555443
No 345
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=27.66 E-value=2e+02 Score=24.17 Aligned_cols=34 Identities=21% Similarity=0.167 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 165 EMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 165 E~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
..+++.|+.||....+++.....|...|..++..
T Consensus 103 ~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~ 136 (144)
T PF11221_consen 103 LKRIKELEEENEEAEEELQEAVKEAEELLKQVQE 136 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477788888888888887777777777776653
No 346
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=27.57 E-value=5.6e+02 Score=24.61 Aligned_cols=14 Identities=14% Similarity=0.190 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 024703 168 SRYLESECRKLGRL 181 (264)
Q Consensus 168 Vk~LE~EN~~L~~q 181 (264)
+++.+.+.+.++.+
T Consensus 216 L~~~Eke~~e~~~~ 229 (269)
T PF05278_consen 216 LKQKEKEVKEIKER 229 (269)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 347
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=27.56 E-value=4e+02 Score=22.98 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=11.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Q 024703 142 RQLRNRDAAVRSRERKKMYVKDLE 165 (264)
Q Consensus 142 RllRNReSAqrSRqRKKeYVeeLE 165 (264)
++...-+.|...-+||++....|.
T Consensus 132 ~~~~~~~~a~~~l~kkk~~~~kl~ 155 (236)
T PF09325_consen 132 KKLIEYQNAEKELQKKKAQLEKLK 155 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 334444445555555555554443
No 348
>smart00340 HALZ homeobox associated leucin zipper.
Probab=27.45 E-value=1.9e+02 Score=20.77 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 165 EMKSRYLESECRKLGRLLHCVLAENQSLRFS 195 (264)
Q Consensus 165 E~KVk~LE~EN~~L~~ql~~L~~EN~~LRqq 195 (264)
|..+..|.+=+..|......|+.|.+.||..
T Consensus 4 EvdCe~LKrcce~LteeNrRL~ke~~eLral 34 (44)
T smart00340 4 EVDCELLKRCCESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445555555555555555555666666644
No 349
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=27.28 E-value=1e+02 Score=29.99 Aligned_cols=31 Identities=23% Similarity=0.230 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAEN 189 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN 189 (264)
..++.|..|++.|+.+|..|+.....|..|-
T Consensus 160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et 190 (306)
T PF04849_consen 160 IQLEALQEKLKSLEEENEQLRSEASQLKTET 190 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 5566777777777777777776666665443
No 350
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=27.13 E-value=2.2e+02 Score=29.86 Aligned_cols=44 Identities=23% Similarity=0.132 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 152 RSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFS 195 (264)
Q Consensus 152 rSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqq 195 (264)
.+|.|-|..+.+|-.++..|=.....|..+...|..+...||..
T Consensus 35 ~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~ 78 (546)
T KOG0977|consen 35 DSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGV 78 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46677777777777665544443333333333333333334433
No 351
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=27.10 E-value=1.9e+02 Score=27.34 Aligned_cols=40 Identities=25% Similarity=0.299 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024703 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNA 201 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~~ 201 (264)
..|+.++++|+.+...++.+...+..|...+|+++.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (364)
T TIGR01242 2 SELDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERLRS 41 (364)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5677889999999999999999999999999999876554
No 352
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.09 E-value=1.2e+02 Score=28.67 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024703 161 VKDLEMKSRYLESECRKLGR 180 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ 180 (264)
+.+||.++++|+.++.+|+.
T Consensus 58 ~~~l~~Ql~~l~g~i~~L~~ 77 (262)
T COG1729 58 LTQLEQQLRQLQGKIEELRG 77 (262)
T ss_pred cHHHHHHHHHHHhhHHHHHh
Confidence 44555555555555555554
No 353
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=27.04 E-value=2.3e+02 Score=27.69 Aligned_cols=45 Identities=29% Similarity=0.419 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHH---HHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 152 RSRERKKMYVKDLEM---KSRY-----------LESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 152 rSRqRKKeYVeeLE~---KVk~-----------LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
.+..+.+.|+++.|. +... |+...-+...++..|.+||.+|...|
T Consensus 21 q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkL 79 (305)
T PF14915_consen 21 QNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKL 79 (305)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHH
Confidence 455666778877664 2222 33334445566777777777776666
No 354
>PRK10963 hypothetical protein; Provisional
Probab=27.04 E-value=1.6e+02 Score=26.52 Aligned_cols=26 Identities=19% Similarity=-0.014 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLE---SECRKLGRLLHCV 185 (264)
Q Consensus 160 YVeeLE~KVk~LE---~EN~~L~~ql~~L 185 (264)
.+..||.++..|- ++|..+..+++.+
T Consensus 52 r~~~Le~~l~~Li~~A~~Ne~l~~~~~~l 80 (223)
T PRK10963 52 HIHVLEEEMTLLMEQAIANEDLFYRLLPL 80 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666655543 3566665555543
No 355
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=26.99 E-value=5e+02 Score=23.89 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=20.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 137 SKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLES 173 (264)
Q Consensus 137 eKR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~ 173 (264)
.+|+.++..+-..|.+.|..=++..++.+.+++..+.
T Consensus 35 ~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ 71 (250)
T PRK14474 35 KKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQ 71 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666555555555555555444433
No 356
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=26.98 E-value=2.4e+02 Score=23.23 Aligned_cols=43 Identities=14% Similarity=0.094 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNA 201 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~~ 201 (264)
..+..++..+..|.....+|+.++..-..+-+.+..+|.+...
T Consensus 72 ~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~~ 114 (132)
T PF10392_consen 72 SVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQLERLHQ 114 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3778888888888888888888888777777777777766543
No 357
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=26.95 E-value=2e+02 Score=27.95 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
..|.++|.++..++..+..+...++.+..+...|.+.|.
T Consensus 144 ~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~ 182 (370)
T PF02994_consen 144 SRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLD 182 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 567788888888887777777777777777777766654
No 358
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=26.62 E-value=1.6e+02 Score=30.30 Aligned_cols=24 Identities=13% Similarity=0.032 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLL 182 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql 182 (264)
...+++|.|++.|+.++.+|+.++
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 334566777777777777777776
No 359
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=26.45 E-value=3.5e+02 Score=27.04 Aligned_cols=35 Identities=17% Similarity=0.057 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024703 167 KSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNA 201 (264)
Q Consensus 167 KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~~ 201 (264)
++..+..+...|..++..+..+...|+++|.....
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 139 EIERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33444445566677777788888888888766544
No 360
>PRK14011 prefoldin subunit alpha; Provisional
Probab=26.30 E-value=2.3e+02 Score=24.36 Aligned_cols=16 Identities=0% Similarity=-0.012 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 024703 147 RDAAVRSRERKKMYVK 162 (264)
Q Consensus 147 ReSAqrSRqRKKeYVe 162 (264)
.+.|...=+||..+++
T Consensus 86 ~~eA~~~~~~ri~~l~ 101 (144)
T PRK14011 86 VSEVIEDFKKSVEELD 101 (144)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444455544433
No 361
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=26.16 E-value=2.2e+02 Score=22.35 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 163 DLEMKSRYLESECRKLGRLLHCVLAE 188 (264)
Q Consensus 163 eLE~KVk~LE~EN~~L~~ql~~L~~E 188 (264)
.|+.++..++.+...++.++..+...
T Consensus 98 ~l~~~~~~l~~~~~~~~~~~~~l~~~ 123 (129)
T cd00890 98 TLEKQIEKLEKQLEKLQDQITELQEE 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555554444443
No 362
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=26.16 E-value=5.8e+02 Score=24.34 Aligned_cols=14 Identities=21% Similarity=0.275 Sum_probs=4.4
Q ss_pred Hhhhcccccccccc
Q 024703 214 LLLGMIHELSFPHI 227 (264)
Q Consensus 214 L~~~sL~~~s~pw~ 227 (264)
+.++.++....+|.
T Consensus 156 lRLGrl~~~~V~W~ 169 (314)
T PF04111_consen 156 LRLGRLPNVPVEWN 169 (314)
T ss_dssp EEE--BTTB---HH
T ss_pred eeeccCCCCCCChH
Confidence 44444555555554
No 363
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=26.15 E-value=3.3e+02 Score=30.49 Aligned_cols=46 Identities=22% Similarity=0.181 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 154 RERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 154 RqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
-.+-+.++..++.++..++.++++-+...+.-+.|++.||..+...
T Consensus 353 ~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql 398 (980)
T KOG0980|consen 353 KEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQL 398 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4445578999999999999999988888888888888888776543
No 364
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=26.14 E-value=3.6e+02 Score=25.51 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 024703 174 ECRKLGRLLHCVLAENQSLRFSLQKGN 200 (264)
Q Consensus 174 EN~~L~~ql~~L~~EN~~LRqqLq~~~ 200 (264)
+..++...+..+.++-+.|+.++....
T Consensus 238 el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 238 ELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444455555555554443
No 365
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=26.09 E-value=2e+02 Score=25.17 Aligned_cols=14 Identities=7% Similarity=-0.306 Sum_probs=6.7
Q ss_pred cccccccccchhHH
Q 024703 223 SFPHILGSWNVELF 236 (264)
Q Consensus 223 s~pw~~~~~~~~l~ 236 (264)
++||..--.++--+
T Consensus 123 ~~PwP~Ed~mR~G~ 136 (188)
T PF10018_consen 123 FRPWPQEDQMRRGM 136 (188)
T ss_pred cCCCCCHHHHHHhH
Confidence 45665444444433
No 366
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=25.98 E-value=2.9e+02 Score=26.75 Aligned_cols=40 Identities=28% Similarity=0.436 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 154 RERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLR 193 (264)
Q Consensus 154 RqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LR 193 (264)
|+|.....++|+.+.+.+.++|...+..+..|......|.
T Consensus 103 Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~ 142 (355)
T PF09766_consen 103 RKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLK 142 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4444455556666666666666655555555554444443
No 367
>PRK03918 chromosome segregation protein; Provisional
Probab=25.84 E-value=5.4e+02 Score=26.97 Aligned_cols=9 Identities=33% Similarity=0.324 Sum_probs=3.7
Q ss_pred CCCCCCCcH
Q 024703 34 PDGSVSPWI 42 (264)
Q Consensus 34 p~~~~~~~~ 42 (264)
|+|+=-+.|
T Consensus 31 ~nG~GKSti 39 (880)
T PRK03918 31 QNGSGKSSI 39 (880)
T ss_pred CCCCCHHHH
Confidence 444443333
No 368
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=25.80 E-value=2.6e+02 Score=20.14 Aligned_cols=29 Identities=10% Similarity=0.056 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 153 SRERKKMYVKDLEMKSRYLESECRKLGRL 181 (264)
Q Consensus 153 SRqRKKeYVeeLE~KVk~LE~EN~~L~~q 181 (264)
...+-..+++.|..++..+.+....|+.+
T Consensus 17 FQ~~v~~~lq~Lt~kL~~vs~RLe~LEn~ 45 (47)
T PF10393_consen 17 FQNKVTSALQSLTQKLDAVSKRLEALENR 45 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445566666666665555555555443
No 369
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=25.69 E-value=4.7e+02 Score=23.13 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024703 158 KMYVKDLEMKSRYLESECRKLGR 180 (264)
Q Consensus 158 KeYVeeLE~KVk~LE~EN~~L~~ 180 (264)
+..+..|+.+.+.|+.+...|..
T Consensus 126 ~~~i~~L~~e~~~L~~~~~~l~~ 148 (189)
T PF10211_consen 126 EEEIEELEEEKEELEKQVQELKN 148 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455544444444444433
No 370
>KOG2475 consensus CDC45 (cell division cycle 45)-like protein [Replication, recombination and repair]
Probab=25.69 E-value=3e+02 Score=29.05 Aligned_cols=18 Identities=6% Similarity=-0.143 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 024703 186 LAENQSLRFSLQKGNAYG 203 (264)
Q Consensus 186 ~~EN~~LRqqLq~~~~~g 203 (264)
+.....|++.+.++++.-
T Consensus 254 ~~~v~~lq~~V~Rl~p~~ 271 (587)
T KOG2475|consen 254 QRCVDLLQDHVNRLTPKN 271 (587)
T ss_pred HHHHHHHHHHHHhcCCCc
Confidence 344556677776665433
No 371
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=25.53 E-value=1e+02 Score=32.49 Aligned_cols=22 Identities=36% Similarity=0.359 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024703 174 ECRKLGRLLHCVLAENQSLRFS 195 (264)
Q Consensus 174 EN~~L~~ql~~L~~EN~~LRqq 195 (264)
+|+-|..+|..|++||+.||+.
T Consensus 651 eNe~l~aelk~lreenq~lr~~ 672 (673)
T KOG4378|consen 651 ENEMLKAELKFLREENQTLRCG 672 (673)
T ss_pred hhHHHHHHHHHHHHhhhhhhcc
Confidence 5666778888888888888864
No 372
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=25.35 E-value=2.4e+02 Score=22.53 Aligned_cols=43 Identities=21% Similarity=0.362 Sum_probs=23.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 145 RNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQ 190 (264)
Q Consensus 145 RNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~ 190 (264)
+.+..|...=..+. +.+|.+++.|+.+...|+.++..++...+
T Consensus 63 ~~~~e~~~~l~~r~---e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 63 TDKEEAIQELKEKK---ETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred ecHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443333333 34466677777777777766666665543
No 373
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=25.19 E-value=2e+02 Score=22.33 Aligned_cols=19 Identities=26% Similarity=0.202 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024703 163 DLEMKSRYLESECRKLGRL 181 (264)
Q Consensus 163 eLE~KVk~LE~EN~~L~~q 181 (264)
.|+.++..++.+...++.+
T Consensus 81 ~l~~~~~~~~~~~~~~~~~ 99 (104)
T PF13600_consen 81 ALEDELAALQDEIQALEAQ 99 (104)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 374
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=25.00 E-value=2e+02 Score=26.66 Aligned_cols=31 Identities=19% Similarity=0.159 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 166 MKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 166 ~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
.++..+|.|+..|++.+..-+.....||++|
T Consensus 51 ~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 51 TELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444455544444444444444444
No 375
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=24.87 E-value=2.4e+02 Score=30.16 Aligned_cols=40 Identities=23% Similarity=0.150 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 155 ERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRF 194 (264)
Q Consensus 155 qRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRq 194 (264)
+||.+.+..-+..+..+.++..++...++.|++|...+|.
T Consensus 34 ~~kd~elr~rqt~~~~l~~~~~~~~~~i~~ltnel~k~r~ 73 (732)
T KOG0614|consen 34 QRKDAELRQRQTILEELIKEISKLEGEIAKLTNELDKLRS 73 (732)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhc
Confidence 4455666666666666777777777777777777777776
No 376
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=24.86 E-value=3.3e+02 Score=28.49 Aligned_cols=50 Identities=24% Similarity=0.119 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH--HHHHHHHHHHHHHH
Q 024703 148 DAAVRSRERKKMYVKDLEMKSRYLESECRK--LGRLLH--CVLAENQSLRFSLQ 197 (264)
Q Consensus 148 eSAqrSRqRKKeYVeeLE~KVk~LE~EN~~--L~~ql~--~L~~EN~~LRqqLq 197 (264)
.|-..||.--.++|.+...|+..|++|... |+.++. .|..||+.+++.-.
T Consensus 298 ~sstes~e~L~qqV~qs~EKIa~LEqEKEHw~LEaQL~kIKLEKEnkRiadLek 351 (518)
T PF10212_consen 298 LSSTESREGLAQQVQQSQEKIAKLEQEKEHWMLEAQLAKIKLEKENKRIADLEK 351 (518)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477889999999999999999999987754 566665 46677777664433
No 377
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=24.55 E-value=3.1e+02 Score=31.31 Aligned_cols=42 Identities=19% Similarity=0.229 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 158 KMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 158 KeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
+..|.+|+.++..|+.++..+..++..+...-..|++.....
T Consensus 741 ~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~ 782 (1353)
T TIGR02680 741 LRRIAELDARLAAVDDELAELARELRALGARQRALADELAGA 782 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 356788888888888888888777777777777777665443
No 378
>PF15058 Speriolin_N: Speriolin N terminus
Probab=24.53 E-value=76 Score=29.22 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024703 177 KLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 177 ~L~~ql~~L~~EN~~LRqqL 196 (264)
-|++++..|+.||..||.++
T Consensus 9 GlrhqierLv~ENeeLKKlV 28 (200)
T PF15058_consen 9 GLRHQIERLVRENEELKKLV 28 (200)
T ss_pred HHHHHHHHHHhhhHHHHHHH
Confidence 46677777778888887665
No 379
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=24.50 E-value=2.6e+02 Score=22.33 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
-+++|-.++.+|+.....+...++.-..|+.+-.++|-+
T Consensus 33 ~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rldn 71 (78)
T COG4238 33 DVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLDN 71 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 356677777777777777777777777777777777643
No 380
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=24.39 E-value=2.7e+02 Score=22.40 Aligned_cols=33 Identities=15% Similarity=0.065 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 024703 164 LEMKSRYLESECRKLGRLLH--CVLAENQSLRFSL 196 (264)
Q Consensus 164 LE~KVk~LE~EN~~L~~ql~--~L~~EN~~LRqqL 196 (264)
+..+...|..||.+|+.+.+ .-+.+|...|++-
T Consensus 28 a~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqkn 62 (87)
T PF10883_consen 28 AKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKN 62 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34446666666666654433 3344566666664
No 381
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=24.23 E-value=3.1e+02 Score=21.99 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024703 164 LEMKSRYLESECRKLGRLLHCV 185 (264)
Q Consensus 164 LE~KVk~LE~EN~~L~~ql~~L 185 (264)
|+..+..++.+...++.++..+
T Consensus 99 l~~~~~~l~~~l~~l~~~~~~~ 120 (129)
T cd00584 99 LTKQIEKLQKELAKLKDQINTL 120 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 382
>PHA02562 46 endonuclease subunit; Provisional
Probab=24.12 E-value=5.3e+02 Score=25.40 Aligned_cols=14 Identities=29% Similarity=0.256 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 024703 174 ECRKLGRLLHCVLA 187 (264)
Q Consensus 174 EN~~L~~ql~~L~~ 187 (264)
+..+|..++..+..
T Consensus 380 ~l~~l~~~l~~~~~ 393 (562)
T PHA02562 380 ELAKLQDELDKIVK 393 (562)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 383
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=24.04 E-value=3.6e+02 Score=25.86 Aligned_cols=21 Identities=14% Similarity=0.496 Sum_probs=12.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHH
Q 024703 142 RQLRNRDAAVRSRERKKMYVK 162 (264)
Q Consensus 142 RllRNReSAqrSRqRKKeYVe 162 (264)
.-+||||..-..++++|.-+.
T Consensus 131 K~IR~~E~sl~p~R~~r~~l~ 151 (271)
T PF13805_consen 131 KSIRNREESLQPSRDRRRKLQ 151 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHhHHHH
Confidence 567888887655444444333
No 384
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=23.61 E-value=1.7e+02 Score=27.37 Aligned_cols=17 Identities=35% Similarity=0.141 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024703 169 RYLESECRKLGRLLHCV 185 (264)
Q Consensus 169 k~LE~EN~~L~~ql~~L 185 (264)
.++.+||.+|++++..+
T Consensus 69 ~~l~~EN~~Lr~e~~~l 85 (283)
T TIGR00219 69 NNLEYENYKLRQELLKK 85 (283)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555666665555444
No 385
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=23.54 E-value=4.1e+02 Score=21.70 Aligned_cols=31 Identities=16% Similarity=0.076 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 169 RYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 169 k~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
..+..+...++.++..|.++|..|++++...
T Consensus 53 ~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L 83 (117)
T COG2919 53 LQLQRQIAAQQAELEKLSARNTALEAEIKDL 83 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444455555555555555555555443
No 386
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=23.49 E-value=4e+02 Score=24.87 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=38.4
Q ss_pred CCChhHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 132 ADDPISKKR--RRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAEN 189 (264)
Q Consensus 132 ~dd~eeKR~--rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN 189 (264)
..-+.-..+ |...||.+==..-|+= ++-+..|..++..|++.|.+|=+++.-|+.=+
T Consensus 79 siLpIVtsQRDRFR~Rn~ELE~elr~~-~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~ 137 (248)
T PF08172_consen 79 SILPIVTSQRDRFRQRNAELEEELRKQ-QQTISSLRREVESLRADNVKLYEKIRYLQSYN 137 (248)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 333444444 5566666655554433 36688899999999999999998888776444
No 387
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.46 E-value=1.1e+02 Score=28.63 Aligned_cols=28 Identities=14% Similarity=0.098 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHCVLAE 188 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~L~~E 188 (264)
+--+|.-++.+..++.+|+.+++.|+++
T Consensus 50 vliqE~ALk~a~~~i~eLe~ri~~lq~~ 77 (233)
T COG3416 50 VLIQEQALKKASTQIKELEKRIAILQAG 77 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445666667777777777777776665
No 388
>PRK10698 phage shock protein PspA; Provisional
Probab=23.43 E-value=3.9e+02 Score=24.23 Aligned_cols=7 Identities=14% Similarity=-0.055 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 024703 154 RERKKMY 160 (264)
Q Consensus 154 RqRKKeY 160 (264)
=.||+.|
T Consensus 91 L~~K~~~ 97 (222)
T PRK10698 91 LIEKQKL 97 (222)
T ss_pred HHHHHHH
Confidence 3344443
No 389
>PHA02109 hypothetical protein
Probab=23.30 E-value=2e+02 Score=26.51 Aligned_cols=33 Identities=21% Similarity=0.198 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 157 KKMYVKDLEMKSRYLESECRKLGRLLHCVLAEN 189 (264)
Q Consensus 157 KKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN 189 (264)
|-+.+.+|+.++..|..|..+++.+++.+.++.
T Consensus 191 ~L~~I~~L~~ki~~LS~E~~Q~~~Ki~N~R~~V 223 (233)
T PHA02109 191 KLKQISELTIKLEALSDEACQVKHKILNLRAEV 223 (233)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777777777777777776665543
No 390
>PF14661 HAUS6_N: HAUS augmin-like complex subunit 6 N-terminus
Probab=23.29 E-value=4.1e+02 Score=24.17 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 158 KMYVKDLEMKSRY---LESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 158 KeYVeeLE~KVk~---LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
..|+..++.++.. ++...+.|..++..+.++...+.+++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~aq~L~~k~r~l~~~~~~~~~~~ 208 (247)
T PF14661_consen 167 NSFLQILQEKDAARQKYQEFAQLLRKKYRELSAECAELQAQL 208 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555544 55556666666666666666666665
No 391
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.28 E-value=5.1e+02 Score=29.06 Aligned_cols=8 Identities=25% Similarity=0.326 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 024703 185 VLAENQSL 192 (264)
Q Consensus 185 L~~EN~~L 192 (264)
|.-|...|
T Consensus 442 l~~eletL 449 (1118)
T KOG1029|consen 442 LQQELETL 449 (1118)
T ss_pred HHHHHHHH
Confidence 33333333
No 392
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=23.27 E-value=4.7e+02 Score=25.58 Aligned_cols=25 Identities=16% Similarity=0.304 Sum_probs=10.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Q 024703 142 RQLRNRDAAVRSRERKKMYVKDLEM 166 (264)
Q Consensus 142 RllRNReSAqrSRqRKKeYVeeLE~ 166 (264)
-++.+-+--.+-|+-|+=.++.||.
T Consensus 22 elE~QldkLkKE~qQrQfQleSlEA 46 (307)
T PF10481_consen 22 ELEQQLDKLKKERQQRQFQLESLEA 46 (307)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3333333334444444444444443
No 393
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=23.06 E-value=3.9e+02 Score=21.21 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
+++..||.+... .||.+.-..+..+..-...|-..|..
T Consensus 22 ~rlK~Le~qk~E--~EN~EIv~~VR~~~mtp~eL~~~L~~ 59 (83)
T PF14193_consen 22 ARLKELEAQKTE--AENLEIVQMVRSMKMTPEELAAFLRA 59 (83)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 344444444433 23444444555444444445444443
No 394
>PRK11546 zraP zinc resistance protein; Provisional
Probab=23.02 E-value=5.1e+02 Score=22.58 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024703 167 KSRYLESECRKLGRLLHCV 185 (264)
Q Consensus 167 KVk~LE~EN~~L~~ql~~L 185 (264)
+++.|.+|+..|+.++..+
T Consensus 90 kI~aL~kEI~~Lr~kL~e~ 108 (143)
T PRK11546 90 KINAVAKEMENLRQSLDEL 108 (143)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666666666666655433
No 395
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=23.00 E-value=2.3e+02 Score=22.76 Aligned_cols=30 Identities=13% Similarity=0.067 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 167 KSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 167 KVk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
|++.++++|.+|+.+.+++..|-+.-..++
T Consensus 24 k~~ka~~~~~kL~~en~qlk~Ek~~~~~qv 53 (87)
T PF10883_consen 24 KVKKAKKQNAKLQKENEQLKTEKAVAETQV 53 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444333
No 396
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=22.92 E-value=1.9e+02 Score=21.60 Aligned_cols=25 Identities=12% Similarity=0.056 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLH 183 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~ 183 (264)
+++..||.+++..+++.+..+.+++
T Consensus 32 qRLa~LE~rL~~ae~ra~~ae~~~~ 56 (60)
T PF11471_consen 32 QRLAALEQRLQAAEQRAQAAEARAK 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555444443
No 397
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=22.90 E-value=5e+02 Score=22.43 Aligned_cols=16 Identities=19% Similarity=0.123 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESE 174 (264)
Q Consensus 159 eYVeeLE~KVk~LE~E 174 (264)
.+|..||..+...+..
T Consensus 24 ~~v~~LEreLe~~q~~ 39 (140)
T PF10473_consen 24 DHVESLERELEMSQEN 39 (140)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4556666655544433
No 398
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=22.85 E-value=1.5e+02 Score=22.80 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 024703 177 KLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 177 ~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
+|.+++..|+.|..+|+.++.+
T Consensus 29 El~eRIalLq~EIeRlkAe~~k 50 (65)
T COG5509 29 ELEERIALLQAEIERLKAELAK 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444555555555555543
No 399
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=22.83 E-value=2e+02 Score=27.84 Aligned_cols=24 Identities=25% Similarity=0.173 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 162 KDLEMKSRYLESECRKLGRLLHCV 185 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L~~ql~~L 185 (264)
+.++.|+..|..|..+|...+...
T Consensus 90 Es~~~kl~RL~~Ev~EL~eEl~~~ 113 (388)
T PF04912_consen 90 ESPEQKLQRLRREVEELKEELEKR 113 (388)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777777766666655543
No 400
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=22.73 E-value=3.1e+02 Score=27.14 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
+.++++|.++.+-++-..+|+.+-..|-.....||..|
T Consensus 24 ~ki~~~~~~v~~kt~nlrrleaqrneln~kvr~lreel 61 (404)
T KOG0728|consen 24 QKIEELQLQVAEKTQNLRRLEAQRNELNAKVRLLREEL 61 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44455555544433333333333333333333333333
No 401
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=22.63 E-value=6.8e+02 Score=24.40 Aligned_cols=11 Identities=18% Similarity=0.250 Sum_probs=5.3
Q ss_pred HhhhhhcCCCC
Q 024703 70 FADVFVDQPSP 80 (264)
Q Consensus 70 ~~~~~~d~~~~ 80 (264)
++.-++.+|.+
T Consensus 216 v~~ai~~~~~P 226 (438)
T PRK00286 216 VARAIAASRIP 226 (438)
T ss_pred HHHHHHcCCCC
Confidence 44444555543
No 402
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=22.63 E-value=3.8e+02 Score=22.41 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFS 195 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqq 195 (264)
++..+..++..|+........++..+...+..|-.+
T Consensus 52 ~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR 87 (141)
T PF13874_consen 52 RLKEINDKLEELQKHDLETSARLEEARRRHQELSHR 87 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444333
No 403
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=22.29 E-value=3e+02 Score=25.04 Aligned_cols=25 Identities=24% Similarity=0.085 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 168 SRYLESECRKLGRLLHCVLAENQSL 192 (264)
Q Consensus 168 Vk~LE~EN~~L~~ql~~L~~EN~~L 192 (264)
..++.+||.+|++++..|..++..+
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQEL 95 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777776644
No 404
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=22.26 E-value=2.9e+02 Score=23.65 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024703 177 KLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 177 ~L~~ql~~L~~EN~~LRqqL 196 (264)
.|......|..||..|+..|
T Consensus 100 ~L~nE~n~L~eEN~~L~eEl 119 (120)
T PF10482_consen 100 ELTNEMNTLKEENKKLKEEL 119 (120)
T ss_pred HHHHHHHhHHHHHHHHHHHh
Confidence 34455566777788777665
No 405
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=22.18 E-value=87 Score=32.24 Aligned_cols=26 Identities=15% Similarity=0.173 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCV 185 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L 185 (264)
.|++|++++++|+++...|+.++...
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~ 57 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKV 57 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchh
Confidence 66677777777776666666665443
No 406
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=22.11 E-value=6.5e+02 Score=23.50 Aligned_cols=80 Identities=19% Similarity=0.187 Sum_probs=0.0
Q ss_pred cCCCCCCC---CCCCCCCCCCCcccccccCcCCCCCCCCCCCCCCCCCCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 024703 88 ELPTDKDQ---NGADESGNASPAEENVLDEPEVNNSDKNYNDTDNDNADDPISKKRRRQLRNRDAAVRSRERKKMYVKDL 164 (264)
Q Consensus 88 ~~~~~~~~---~~~~~~g~~~~~~~~~~~~~e~~~~~~~~~~~ee~d~dd~eeKR~rRllRNReSAqrSRqRKKeYVeeL 164 (264)
++||+.-| +..+++|+ -..+-++.-|.||....-.+-++-|.-=|.=..+|
T Consensus 31 ~GStsssSApNtdd~ds~~--------------------------hS~a~k~syk~rrr~aHtqaEqkRRdAIk~GYddL 84 (229)
T KOG1319|consen 31 IGSTSASSAPNTDDEDSDY--------------------------HSEAYKESYKDRRRRAHTQAEQKRRDAIKRGYDDL 84 (229)
T ss_pred CCCCCCCCCCCCCcccccc--------------------------hhHHHHhhHHHHHHHHHHHHHHHHHHHHHhchHHH
Q ss_pred HHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 165 EMKS--------------------------RYLESECRKLGRLLHCVLAENQSLR 193 (264)
Q Consensus 165 E~KV--------------------------k~LE~EN~~L~~ql~~L~~EN~~LR 193 (264)
..-| ..|.++...-..++.+|.++..+||
T Consensus 85 q~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~vtAL~ 139 (229)
T KOG1319|consen 85 QTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDVTALK 139 (229)
T ss_pred HHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 407
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=22.02 E-value=6.2e+02 Score=23.22 Aligned_cols=11 Identities=18% Similarity=0.302 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 024703 183 HCVLAENQSLR 193 (264)
Q Consensus 183 ~~L~~EN~~LR 193 (264)
..|..|....+
T Consensus 157 ~aL~~e~~aaq 167 (192)
T PF11180_consen 157 QALEAERRAAQ 167 (192)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 408
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=22.00 E-value=2.9e+02 Score=25.78 Aligned_cols=37 Identities=19% Similarity=0.077 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 150 AVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVL 186 (264)
Q Consensus 150 AqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~ 186 (264)
|...-+.-+.-....+.++..|+.++..|++++.+|.
T Consensus 103 A~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~ 139 (232)
T KOG2483|consen 103 ALEHIQSLERKSATQQQDIEDLSRENRKLKARLEQLS 139 (232)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444454445556667778888889999998888766
No 409
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=21.98 E-value=3.8e+02 Score=20.87 Aligned_cols=32 Identities=28% Similarity=0.222 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 024703 169 RYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (264)
Q Consensus 169 k~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~ 200 (264)
..|-.+...|..++..+.++-..+-.++....
T Consensus 32 ~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~ 63 (108)
T PF02403_consen 32 IELDQERRELQQELEELRAERNELSKEIGKLK 63 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 33344444444444444444444444444333
No 410
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=21.93 E-value=1.5e+02 Score=29.71 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESE 174 (264)
Q Consensus 159 eYVeeLE~KVk~LE~E 174 (264)
+-.++|..++..||.+
T Consensus 46 kEN~~Lk~eVerLE~e 61 (420)
T PF07407_consen 46 KENNDLKIEVERLENE 61 (420)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555443
No 411
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=21.87 E-value=7e+02 Score=28.03 Aligned_cols=66 Identities=18% Similarity=0.188 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 134 DPISKKRRRQLRNR-DAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 134 d~eeKR~rRllRNR-eSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
.++.+...+....| +.|+.......+-+..++.+...++.+..+...++..+..+...+++++...
T Consensus 464 ~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l 530 (1201)
T PF12128_consen 464 TEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAEL 530 (1201)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 412
>PF11690 DUF3287: Protein of unknown function (DUF3287); InterPro: IPR021704 This eukaryotic family of proteins has no known function.
Probab=21.83 E-value=4e+02 Score=22.37 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCV--LAENQSL 192 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L--~~EN~~L 192 (264)
.+++.++.+-+.|..+.++|..+++.+ ..+..+|
T Consensus 42 ~F~~kV~~qH~~~~~e~r~L~kKi~~l~veRkmr~L 77 (109)
T PF11690_consen 42 DFIDKVVDQHQRYCDERRKLRKKIQDLRVERKMRAL 77 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566777777777777777777777776 4444444
No 413
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.82 E-value=4.6e+02 Score=23.44 Aligned_cols=44 Identities=14% Similarity=0.043 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 155 ERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 155 qRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
..+|.||.+|+.+++.+......|-.+-+.+..--..+-.-+..
T Consensus 7 ~~~k~yl~~l~~~lk~~~~~~~~lv~~rk~la~~~~~fs~al~~ 50 (198)
T cd07630 7 QKERDMNTKLSANMKEAAEKFLKIVNTEQRLANALGHLSSSLQL 50 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999998888777765555444444444444433
No 414
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=21.79 E-value=6.5e+02 Score=23.39 Aligned_cols=31 Identities=19% Similarity=0.141 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 167 KSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 167 KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
+...|+.+.+..+..+...+..+..|+.|..
T Consensus 159 ~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e 189 (216)
T KOG1962|consen 159 DLEKLETELEKKQKKLEKAQKKVDALKKQSE 189 (216)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555555555555555543
No 415
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=21.75 E-value=3.2e+02 Score=27.94 Aligned_cols=43 Identities=16% Similarity=0.134 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 157 KKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 157 KKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
-+.|-+.|+.+.+.|..+...|...+.++...-..|.|++...
T Consensus 438 i~~~~~rl~~~e~~~~~qf~~m~~~~~~m~sq~~~L~q~l~~~ 480 (483)
T COG1345 438 IKSLDKRLEAAEERYKTQFNTLDDMMTQMNSQSSYLTQQLVSV 480 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5577788888888888899999999999999999999988654
No 416
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=21.71 E-value=4.6e+02 Score=21.53 Aligned_cols=10 Identities=30% Similarity=0.438 Sum_probs=4.7
Q ss_pred HHhHHHHHHH
Q 024703 144 LRNRDAAVRS 153 (264)
Q Consensus 144 lRNReSAqrS 153 (264)
..-|++|+..
T Consensus 54 f~krE~A~E~ 63 (100)
T PF04568_consen 54 FGKREAAQEE 63 (100)
T ss_dssp HHHHHHHHHH
T ss_pred cchHHHhhHH
Confidence 3444555543
No 417
>PRK12705 hypothetical protein; Provisional
Probab=21.65 E-value=6.4e+02 Score=26.10 Aligned_cols=65 Identities=12% Similarity=0.149 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024703 134 DPISKKRRRQLRNRDAAVRSR----ERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNA 201 (264)
Q Consensus 134 d~eeKR~rRllRNReSAqrSR----qRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~~ 201 (264)
+.+.+.++.-+++++..-.-| .||..+++..+.++...+++.......+..+ .+.+...|....+
T Consensus 69 e~e~~~~~~~~~~~e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~---~~~~~~~Le~ia~ 137 (508)
T PRK12705 69 RQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEEL---EKQLDNELYRVAG 137 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhC
No 418
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=21.61 E-value=2.3e+02 Score=26.08 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024703 171 LESECRKLGRLLHCVLAENQSLR 193 (264)
Q Consensus 171 LE~EN~~L~~ql~~L~~EN~~LR 193 (264)
|..++..+...+..|..||..|+
T Consensus 130 Lh~~ie~~~eEi~~lk~en~~L~ 152 (200)
T PF07412_consen 130 LHKEIEQKDEEIAKLKEENEELK 152 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444333
No 419
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=21.46 E-value=5.2e+02 Score=28.62 Aligned_cols=29 Identities=28% Similarity=0.330 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 169 RYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 169 k~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
..|+..|.+|.+.+..+..||+.|+..++
T Consensus 451 e~lq~kneellk~~e~q~~Enk~~~~~~~ 479 (861)
T PF15254_consen 451 ELLQSKNEELLKVIENQKEENKRLRKMFQ 479 (861)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777788888888889988876643
No 420
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=21.46 E-value=2.3e+02 Score=32.20 Aligned_cols=41 Identities=22% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 024703 155 ERKKMYVKDLEMKSRYLESECRKLGRLLHCVLA--ENQSLRFS 195 (264)
Q Consensus 155 qRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~--EN~~LRqq 195 (264)
..+....+.|+..+-.|+.+|..|..+|+.|.. +|.++-.+
T Consensus 526 e~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq 568 (1195)
T KOG4643|consen 526 ELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQ 568 (1195)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHH
No 421
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=21.32 E-value=5.8e+02 Score=23.45 Aligned_cols=35 Identities=26% Similarity=0.210 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 163 DLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 163 eLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
.|+.++..++.++.+|......-..|...|+..|.
T Consensus 79 ~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~ 113 (246)
T PF00769_consen 79 QLEQELREAEAEIARLEEESERKEEEAEELQEELE 113 (246)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555556666666666666666666666665554
No 422
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=21.24 E-value=5.8e+02 Score=22.58 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=22.2
Q ss_pred cHHHHHHhhccCCCCCCccCCCcccHHHHHhhhhhc
Q 024703 41 WIGDIESMLMNDNDDNSELEPNQQSLDDFFADVFVD 76 (264)
Q Consensus 41 ~~~eie~~lm~d~~~~~~~~~~~~~~~~f~~~~~~d 76 (264)
.+-|||+++-+.-. ..++.|-+.+-.| ||
T Consensus 13 ~lKELEK~~pK~~g------I~~~~VKdvlq~L-vD 41 (188)
T PF03962_consen 13 TLKELEKLAPKEKG------IVSMSVKDVLQSL-VD 41 (188)
T ss_pred cHHHHHHHcccccC------CchhhHHHHHHHH-hc
Confidence 68899999876544 3468889999888 65
No 423
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=21.13 E-value=81 Score=23.03 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024703 158 KMYVKDLEMKSRYLESECRKL 178 (264)
Q Consensus 158 KeYVeeLE~KVk~LE~EN~~L 178 (264)
|.+|.+||.+|+.|..-|+.|
T Consensus 17 ~vrv~eLEeEV~~LrKINrdL 37 (48)
T PF14077_consen 17 RVRVSELEEEVRTLRKINRDL 37 (48)
T ss_pred eeeHHHHHHHHHHHHHHhHHH
Confidence 356677777777777766665
No 424
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=21.13 E-value=5.6e+02 Score=22.82 Aligned_cols=47 Identities=19% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 149 AAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFS 195 (264)
Q Consensus 149 SAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqq 195 (264)
.|-.-+..-.+.+..|+..+..++....+|+.++..|......+|.+
T Consensus 89 ~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k 135 (219)
T TIGR02977 89 AALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARAR 135 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 425
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=21.09 E-value=2.7e+02 Score=26.63 Aligned_cols=47 Identities=21% Similarity=0.198 Sum_probs=25.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHC 184 (264)
Q Consensus 138 KR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~ 184 (264)
|++|+.+..+.+.-+.+.-.-..+..||.++..+|.++.-...++..
T Consensus 144 R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n 190 (271)
T PF13805_consen 144 RDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSN 190 (271)
T ss_dssp HHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33444555555544333333345677777777777776555544443
No 426
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=21.07 E-value=6.2e+02 Score=22.85 Aligned_cols=33 Identities=27% Similarity=0.337 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLRF 194 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRq 194 (264)
..+-.-+..+..+|.+|+..+..+..|+..|+.
T Consensus 152 ~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~ 184 (206)
T PF14988_consen 152 KSLDEFTRSIKRENQQLRKELLQLIQEAQKLEA 184 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444556667777777777777766666643
No 427
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=21.04 E-value=4e+02 Score=29.02 Aligned_cols=52 Identities=21% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHHHHHHHHHHH
Q 024703 151 VRSRERKKMYVKDLEMKSRYLESECRKLG-----------------------------------RLLHCVLAENQSLRFS 195 (264)
Q Consensus 151 qrSRqRKKeYVeeLE~KVk~LE~EN~~L~-----------------------------------~ql~~L~~EN~~LRqq 195 (264)
..++.+-..-+..|..++..++.+|..|+ ++|..|.+|.++||..
T Consensus 126 ~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l 205 (769)
T PF05911_consen 126 SEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRAL 205 (769)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhcCCC
Q 024703 196 LQKGNAY 202 (264)
Q Consensus 196 Lq~~~~~ 202 (264)
+.+.-+.
T Consensus 206 ~rk~lpg 212 (769)
T PF05911_consen 206 VRKKLPG 212 (769)
T ss_pred HhccCCC
No 428
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=21.03 E-value=5.8e+02 Score=27.98 Aligned_cols=39 Identities=21% Similarity=0.236 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
..+.-||.++..|..+...-...+..|+.||.+|+.++.
T Consensus 587 kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~ 625 (786)
T PF05483_consen 587 KQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKIT 625 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 334444555555555444445555667788888877653
No 429
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=20.81 E-value=1.2e+02 Score=28.49 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024703 167 KSRYLESECRKLGRLLHCVLA 187 (264)
Q Consensus 167 KVk~LE~EN~~L~~ql~~L~~ 187 (264)
|+..||.|+..|+.||+.+++
T Consensus 123 KIsALEdELs~LRaQIA~IV~ 143 (253)
T PF05308_consen 123 KISALEDELSRLRAQIAKIVA 143 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 566677777777777776653
No 430
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=20.80 E-value=3.3e+02 Score=26.37 Aligned_cols=40 Identities=15% Similarity=0.276 Sum_probs=19.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 143 QLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLL 182 (264)
Q Consensus 143 llRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql 182 (264)
+.+.|......-++||.++..|..+++.+.....-++..+
T Consensus 113 l~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq~~l 152 (355)
T PF09766_consen 113 LEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQEYL 152 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 3344444444445555555555555555554444444433
No 431
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=20.79 E-value=8.1e+02 Score=25.92 Aligned_cols=42 Identities=10% Similarity=0.042 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 158 KMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 158 KeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
++++..|-.++..|..+......++..|......|+.++...
T Consensus 28 qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~ 69 (617)
T PF15070_consen 28 QQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEP 69 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 466667777777777777777777777777777777776543
No 432
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=20.78 E-value=7.5e+02 Score=24.24 Aligned_cols=27 Identities=15% Similarity=0.017 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 024703 177 KLGRLLHCVLAENQSLRFSLQKGNAYG 203 (264)
Q Consensus 177 ~L~~ql~~L~~EN~~LRqqLq~~~~~g 203 (264)
+.+.+...|..|...|||+|....+.+
T Consensus 76 ~sre~Nk~L~~Ev~~Lrqkl~E~qGD~ 102 (319)
T PF09789_consen 76 ESREQNKKLKEEVEELRQKLNEAQGDI 102 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 345666778888889999987776665
No 433
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=20.77 E-value=3.4e+02 Score=23.58 Aligned_cols=37 Identities=30% Similarity=0.293 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
..||.....++.++..|...+....+....||..|..
T Consensus 84 ~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~LYa 120 (131)
T KOG1760|consen 84 DQLEEKKETLEKEIEELESELESISARMDELKKVLYA 120 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666667777777777777777888877754
No 434
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=20.75 E-value=6.5e+02 Score=28.45 Aligned_cols=48 Identities=21% Similarity=0.267 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 148 DAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 148 eSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
..-..+|.|| ..+|.++.-.+.|...|.+++..+...-..+|.++...
T Consensus 1066 ~~Lst~RsRr----~~~EkqlT~~E~E~~~L~~~~rK~ErDY~~~Re~VV~A 1113 (1480)
T COG3096 1066 AQLSTNRSRR----NQLEKQLTFCEAEMDNLTRKLRKLERDYFEMREQVVTA 1113 (1480)
T ss_pred HHHhccHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 3344556665 34677888888899999999999999999999887653
No 435
>PF09340 NuA4: Histone acetyltransferase subunit NuA4; InterPro: IPR015418 The NuA4 histone acetyltransferase (HAT) multisubunit complex is responsible for acetylation of histone H4 and H2A N-terminal tails in yeast []. NuA4 complexes are highly conserved in eukaryotes and play primary roles in transcription, cellular response to DNA damage, and cell cycle control [].
Probab=20.67 E-value=2.2e+02 Score=22.13 Aligned_cols=29 Identities=21% Similarity=0.174 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCVLAE 188 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L~~E 188 (264)
.+.+|-.+-+.|+.+...|+.+|-.++.+
T Consensus 3 ~L~~l~~~k~~Le~~L~~lE~qIy~~Et~ 31 (80)
T PF09340_consen 3 ELKELLQKKKKLEKDLAALEKQIYDKETS 31 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666777777777776655443
No 436
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=20.65 E-value=1.7e+02 Score=26.17 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhc
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAE-----NQSLRFSLQKG 199 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~E-----N~~LRqqLq~~ 199 (264)
..+..+|..+..|.+-...-.++...|... ...|||-|.+.
T Consensus 36 ~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGit~l~elkqnlskg 81 (162)
T PF04201_consen 36 SELAKVEEEIQTLRQVLAAKERHCAELKRKLGITPLSELKQNLSKG 81 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCchHHHHHHHHHHH
Confidence 468888999999988766655555555544 45667776553
No 437
>PF07767 Nop53: Nop53 (60S ribosomal biogenesis); InterPro: IPR011687 This entry contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60) []. This protein has been found to interact with herpes simplex type 1 regulatory proteins, but its exact role in the life cycle of the virus is not known [].
Probab=20.54 E-value=7.8e+02 Score=23.77 Aligned_cols=34 Identities=26% Similarity=0.359 Sum_probs=19.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYL 171 (264)
Q Consensus 138 KR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~L 171 (264)
+|.-+..|||+..++-++|+......+..++.++
T Consensus 276 kkKTk~qRnK~~r~k~~~~~~~~~k~~k~~~~~i 309 (387)
T PF07767_consen 276 KKKTKAQRNKEKRRKEEERKEKERKKEKKKIKQI 309 (387)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334667777777666666665555444444433
No 438
>PHA02562 46 endonuclease subunit; Provisional
Probab=20.43 E-value=8.3e+02 Score=24.05 Aligned_cols=14 Identities=14% Similarity=0.069 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 024703 179 GRLLHCVLAENQSL 192 (264)
Q Consensus 179 ~~ql~~L~~EN~~L 192 (264)
...+..+..+-..+
T Consensus 378 ~~~l~~l~~~l~~~ 391 (562)
T PHA02562 378 AEELAKLQDELDKI 391 (562)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 439
>PRK02224 chromosome segregation protein; Provisional
Probab=20.27 E-value=7.4e+02 Score=26.12 Aligned_cols=6 Identities=17% Similarity=0.706 Sum_probs=2.6
Q ss_pred HHHHhh
Q 024703 44 DIESML 49 (264)
Q Consensus 44 eie~~l 49 (264)
.|+++|
T Consensus 117 ~i~~ll 122 (880)
T PRK02224 117 EVTELL 122 (880)
T ss_pred HHHHHH
Confidence 344444
No 440
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=20.23 E-value=1.8e+02 Score=21.60 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024703 164 LEMKSRYLESECRKLGRLLHC 184 (264)
Q Consensus 164 LE~KVk~LE~EN~~L~~ql~~ 184 (264)
|..++..|+++|.+|+..+++
T Consensus 38 l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 38 LIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 344556777888888777654
No 441
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=20.20 E-value=5.8e+02 Score=23.48 Aligned_cols=43 Identities=23% Similarity=0.126 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 157 KKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 157 KKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
|..-++..+..+.....+...|+.++..+..|+..||..+...
T Consensus 64 K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 64 KQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred hhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 3344555556666666677778899999999999999999775
No 442
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=20.16 E-value=5.1e+02 Score=21.51 Aligned_cols=34 Identities=24% Similarity=0.131 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 165 EMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 165 E~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
|..++.+++|+..|.-+.++|......|...|..
T Consensus 39 e~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~ 72 (102)
T PF10205_consen 39 EQALRKLEQENDSLTFRNQQLTKRVEVLQEELEE 72 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555556666666666666653
No 443
>PRK15396 murein lipoprotein; Provisional
Probab=20.08 E-value=2.9e+02 Score=21.75 Aligned_cols=27 Identities=11% Similarity=0.188 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 162 KDLEMKSRYLESECRKLGRLLHCVLAE 188 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L~~ql~~L~~E 188 (264)
+.|..++.++.+..+.++..++....|
T Consensus 35 ~~L~~kvdql~~dv~~~~~~~~~a~~e 61 (78)
T PRK15396 35 QTLNAKVDQLSNDVNAMRSDVQAAKDD 61 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444433334
No 444
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=20.06 E-value=5.3e+02 Score=29.83 Aligned_cols=48 Identities=23% Similarity=0.185 Sum_probs=31.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 145 RNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSL 192 (264)
Q Consensus 145 RNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~L 192 (264)
.-=.+.+.+-++++.-+..|+..+..+..+..+....+..+..+-+.|
T Consensus 528 ~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~ 575 (1293)
T KOG0996|consen 528 GKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNL 575 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHH
Confidence 334455566677777788888877777777766666666555555533
No 445
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=20.04 E-value=2.7e+02 Score=22.81 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 024703 155 ERKKMYVKDLEMKSRY----LESECRKLGRLL 182 (264)
Q Consensus 155 qRKKeYVeeLE~KVk~----LE~EN~~L~~ql 182 (264)
++-++.+..|..++.. -+.++.+|++.|
T Consensus 68 ~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 68 KKEKEQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333444444433333 444455554443
No 446
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=20.04 E-value=3.3e+02 Score=24.60 Aligned_cols=29 Identities=10% Similarity=0.049 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 170 YLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 170 ~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
.+|++..+.+.++..+..+...|..+...
T Consensus 166 ~ie~~L~~v~~eIe~~~~~~~~l~~~v~~ 194 (262)
T PF14257_consen 166 EIERELSRVRSEIEQLEGQLKYLDDRVDY 194 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhce
Confidence 45667777777777777888888877653
No 447
>COG3132 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.02 E-value=1.4e+02 Score=27.65 Aligned_cols=20 Identities=35% Similarity=0.391 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024703 164 LEMKSRYLESECRKLGRLLH 183 (264)
Q Consensus 164 LE~KVk~LE~EN~~L~~ql~ 183 (264)
||.+|..|+++..+|+.++.
T Consensus 190 learv~aLe~eva~L~~rld 209 (215)
T COG3132 190 LEARVEALEQEVAELRARLD 209 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
Done!