Query 024703
Match_columns 264
No_of_seqs 161 out of 913
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 12:58:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024703.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024703hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t2k_D Cyclic-AMP-dependent tr 99.6 1.6E-14 5.6E-19 104.6 9.3 60 138-197 1-60 (61)
2 2wt7_A Proto-oncogene protein 99.5 2.7E-14 9.3E-19 104.4 9.8 63 137-199 1-63 (63)
3 1jnm_A Proto-oncogene C-JUN; B 99.5 2.6E-14 9E-19 103.9 7.0 62 138-199 1-62 (62)
4 1dh3_A Transcription factor CR 99.5 6.7E-14 2.3E-18 100.5 6.9 51 138-188 1-51 (55)
5 1ci6_A Transcription factor AT 99.3 4.6E-12 1.6E-16 92.8 7.5 60 138-197 2-61 (63)
6 2dgc_A Protein (GCN4); basic d 99.2 4.5E-11 1.5E-15 87.8 6.8 46 141-186 12-57 (63)
7 1gu4_A CAAT/enhancer binding p 99.0 2.5E-09 8.5E-14 81.9 8.6 62 138-199 15-76 (78)
8 1hjb_A Ccaat/enhancer binding 98.9 6.3E-09 2.1E-13 81.1 10.5 63 138-200 15-77 (87)
9 1gd2_E Transcription factor PA 98.9 1.1E-08 3.8E-13 76.9 8.8 57 140-196 10-66 (70)
10 2oqq_A Transcription factor HY 98.7 3.3E-08 1.1E-12 68.1 6.0 40 158-197 2-41 (42)
11 2wt7_B Transcription factor MA 98.4 3E-06 1E-10 66.6 10.6 64 136-199 25-88 (90)
12 3a5t_A Transcription factor MA 98.3 2.2E-08 7.5E-13 80.8 -4.0 58 136-193 35-92 (107)
13 1skn_P DNA-binding domain of S 96.5 0.0011 3.8E-08 52.3 2.2 30 136-165 60-89 (92)
14 2c9l_Y EB1, zebra, BZLF1 trans 94.0 0.29 1E-05 35.7 7.9 43 143-199 6-48 (63)
15 2kz5_A Transcription factor NF 91.6 0.014 4.7E-07 46.0 -2.2 24 136-159 64-87 (91)
16 2yy0_A C-MYC-binding protein; 88.8 0.86 2.9E-05 32.1 5.3 33 166-198 19-51 (53)
17 2w6a_A ARF GTPase-activating p 88.7 0.67 2.3E-05 34.1 4.8 34 161-194 29-62 (63)
18 1kd8_A GABH AIV, GCN4 acid bas 88.3 0.61 2.1E-05 31.1 4.0 30 160-189 2-31 (36)
19 3oja_B Anopheles plasmodium-re 87.9 3.5 0.00012 38.9 10.6 45 155-199 533-577 (597)
20 3mq7_A Bone marrow stromal ant 87.7 3 0.0001 34.3 8.6 41 159-199 71-111 (121)
21 1nkp_B MAX protein, MYC proto- 87.7 1.1 3.8E-05 33.2 5.7 31 170-200 51-81 (83)
22 1hjb_A Ccaat/enhancer binding 87.1 4.1 0.00014 31.4 8.7 63 135-197 16-81 (87)
23 2oxj_A Hybrid alpha/beta pepti 87.0 0.86 3E-05 30.0 4.1 26 160-185 2-27 (34)
24 3s9g_A Protein hexim1; cyclin 86.8 1.1 3.7E-05 36.0 5.4 38 163-200 41-92 (104)
25 1kd8_B GABH BLL, GCN4 acid bas 86.8 1.5 5E-05 29.3 5.1 28 160-187 2-29 (36)
26 3m48_A General control protein 85.2 1 3.5E-05 29.5 3.7 25 161-185 2-26 (33)
27 1nkp_B MAX protein, MYC proto- 84.8 1.2 4.2E-05 33.0 4.6 35 158-192 46-80 (83)
28 2jee_A YIIU; FTSZ, septum, coi 84.5 3.3 0.00011 31.8 6.9 37 161-197 29-65 (81)
29 3o0z_A RHO-associated protein 84.3 8.8 0.0003 33.0 10.3 56 144-199 75-130 (168)
30 3efg_A Protein SLYX homolog; x 84.1 3.1 0.00011 31.3 6.6 38 159-196 14-51 (78)
31 1fmh_A General control protein 83.5 2.4 8.2E-05 27.3 4.8 28 161-188 3-30 (33)
32 1gd2_E Transcription factor PA 83.5 4.5 0.00015 30.0 7.1 48 144-193 23-70 (70)
33 3c3f_A Alpha/beta peptide with 83.4 1.6 5.5E-05 28.7 4.1 26 160-185 2-27 (34)
34 1nkp_A C-MYC, MYC proto-oncoge 82.6 2.2 7.4E-05 32.4 5.3 35 159-200 52-86 (88)
35 3swy_A Cyclic nucleotide-gated 82.1 3.9 0.00013 28.3 5.9 34 163-196 2-35 (46)
36 3i00_A HIP-I, huntingtin-inter 81.5 14 0.00047 29.9 9.9 46 154-199 35-80 (120)
37 3m91_A Proteasome-associated A 81.2 6.3 0.00022 27.7 6.8 42 159-200 9-50 (51)
38 1am9_A Srebp-1A, protein (ster 81.1 15 0.0005 27.3 9.5 55 144-198 8-75 (82)
39 2hy6_A General control protein 81.0 2.1 7E-05 28.2 3.9 26 160-185 2-27 (34)
40 1nkp_A C-MYC, MYC proto-oncoge 80.9 2.9 9.9E-05 31.8 5.4 20 176-195 55-74 (88)
41 3c3g_A Alpha/beta peptide with 80.5 3.2 0.00011 27.1 4.7 25 161-185 2-26 (33)
42 2wq1_A General control protein 80.0 3.4 0.00012 27.0 4.7 25 161-185 2-26 (33)
43 2bni_A General control protein 79.6 2.4 8.3E-05 27.9 3.9 26 160-185 2-27 (34)
44 1nlw_A MAD protein, MAX dimeri 79.3 3.1 0.00011 31.1 5.1 33 158-197 46-78 (80)
45 1nlw_A MAD protein, MAX dimeri 79.2 4 0.00014 30.5 5.6 22 175-196 49-70 (80)
46 1uo4_A General control protein 77.7 3 0.0001 27.4 3.9 26 160-185 2-27 (34)
47 3swf_A CGMP-gated cation chann 77.4 4 0.00014 30.9 5.1 32 162-193 3-34 (74)
48 1zme_C Proline utilization tra 76.5 2.3 8E-05 29.4 3.4 25 158-182 43-67 (70)
49 2oqq_A Transcription factor HY 76.2 5.9 0.0002 27.1 5.2 25 159-183 17-41 (42)
50 1am9_A Srebp-1A, protein (ster 75.9 4.4 0.00015 30.2 5.0 28 158-185 49-76 (82)
51 3s4r_A Vimentin; alpha-helix, 74.6 6.5 0.00022 30.2 5.8 37 159-195 56-92 (93)
52 3ra3_B P2F; coiled coil domain 74.6 2.6 8.8E-05 26.3 2.8 25 168-192 2-26 (28)
53 3he5_A Synzip1; heterodimeric 74.5 11 0.00037 26.0 6.2 37 160-196 4-47 (49)
54 1go4_E MAD1 (mitotic arrest de 73.4 21 0.00073 28.2 8.6 54 148-201 22-96 (100)
55 2jee_A YIIU; FTSZ, septum, coi 73.0 11 0.00039 28.8 6.7 36 159-194 6-41 (81)
56 1dip_A Delta-sleep-inducing pe 71.7 4.2 0.00014 31.1 4.0 30 168-197 17-46 (78)
57 1fxk_A Prefoldin; archaeal pro 70.9 16 0.00054 27.3 7.1 41 158-198 64-104 (107)
58 2zqm_A Prefoldin beta subunit 70.5 14 0.0005 27.8 6.9 42 158-199 69-110 (117)
59 3m9b_A Proteasome-associated A 70.5 5.2 0.00018 36.3 5.0 42 159-200 54-95 (251)
60 2oa5_A Hypothetical protein BQ 70.3 2.9 9.9E-05 33.9 3.0 23 176-198 11-33 (110)
61 1wt6_A Myotonin-protein kinase 70.2 31 0.0011 26.5 8.5 34 159-192 38-71 (81)
62 1gu4_A CAAT/enhancer binding p 69.8 27 0.00092 26.2 8.1 51 136-186 17-70 (78)
63 2r2v_A GCN4 leucine zipper; co 69.1 7.1 0.00024 25.7 4.1 24 161-184 3-26 (34)
64 1deb_A APC protein, adenomatou 68.7 5.1 0.00017 28.6 3.6 15 182-196 33-47 (54)
65 3oja_A Leucine-rich immune mol 68.2 37 0.0013 31.4 10.4 50 148-197 424-473 (487)
66 1dip_A Delta-sleep-inducing pe 67.0 5.9 0.0002 30.3 3.9 25 158-182 21-45 (78)
67 2akf_A Coronin-1A; coiled coil 66.2 8.1 0.00028 24.8 3.8 28 162-189 2-29 (32)
68 2er8_A Regulatory protein Leu3 66.1 3.3 0.00011 29.0 2.3 23 157-179 47-69 (72)
69 3m9b_A Proteasome-associated A 65.7 6.5 0.00022 35.7 4.6 39 157-195 59-97 (251)
70 3oja_B Anopheles plasmodium-re 65.6 28 0.00094 32.8 9.1 30 167-196 538-567 (597)
71 2j5u_A MREC protein; bacterial 65.3 2.6 9E-05 37.3 2.0 37 163-199 23-62 (255)
72 1dh3_A Transcription factor CR 65.0 9.4 0.00032 26.7 4.4 28 174-201 23-50 (55)
73 2lz1_A Nuclear factor erythroi 64.7 0.097 3.3E-06 41.1 -6.5 21 138-158 66-86 (90)
74 3u1c_A Tropomyosin alpha-1 cha 64.2 47 0.0016 25.5 10.0 51 146-196 17-67 (101)
75 3ljm_A Coil Ser L9C; de novo d 63.2 13 0.00045 23.6 4.3 25 162-186 4-28 (31)
76 2ve7_C Kinetochore protein NUF 62.9 12 0.00042 33.1 5.9 58 133-197 115-172 (250)
77 3mq7_A Bone marrow stromal ant 62.7 26 0.00091 28.7 7.2 31 167-197 72-102 (121)
78 4etp_A Kinesin-like protein KA 62.6 10 0.00036 35.6 5.6 35 162-196 20-54 (403)
79 1zxa_A CGMP-dependent protein 61.7 13 0.00043 27.6 4.8 30 157-186 23-52 (67)
80 1uii_A Geminin; human, DNA rep 61.3 33 0.0011 26.4 7.2 40 156-196 37-76 (83)
81 3ghg_A Fibrinogen alpha chain; 60.7 14 0.00048 36.9 6.3 44 154-197 105-148 (562)
82 3vkg_A Dynein heavy chain, cyt 60.2 36 0.0012 40.4 10.4 65 134-198 2010-2074(3245)
83 3nmd_A CGMP dependent protein 60.2 17 0.0006 27.3 5.3 25 159-183 40-64 (72)
84 3mq9_A Bone marrow stromal ant 60.1 55 0.0019 30.0 9.9 15 182-196 445-459 (471)
85 1kd8_B GABH BLL, GCN4 acid bas 60.1 16 0.00056 24.2 4.5 31 167-197 2-32 (36)
86 3a7p_A Autophagy protein 16; c 59.9 79 0.0027 26.7 10.1 38 161-198 98-135 (152)
87 2zxx_A Geminin; coiled-coil, c 59.6 25 0.00084 26.8 6.2 39 157-196 26-64 (79)
88 2dgc_A Protein (GCN4); basic d 59.0 13 0.00045 26.6 4.4 19 177-195 34-52 (63)
89 4dzn_A Coiled-coil peptide CC- 58.7 22 0.00075 22.8 4.8 28 168-195 4-31 (33)
90 2oxj_A Hybrid alpha/beta pepti 58.1 16 0.00054 24.0 4.2 31 167-197 2-32 (34)
91 2v71_A Nuclear distribution pr 58.1 26 0.0009 30.4 6.9 45 154-198 37-81 (189)
92 3s9g_A Protein hexim1; cyclin 56.3 65 0.0022 25.7 8.3 31 165-195 64-94 (104)
93 1gmj_A ATPase inhibitor; coile 56.1 67 0.0023 24.7 8.6 6 147-152 25-30 (84)
94 1wlq_A Geminin; coiled-coil; 2 55.9 29 0.00099 26.8 6.0 27 169-195 41-67 (83)
95 2dfs_A Myosin-5A; myosin-V, in 55.5 50 0.0017 35.0 9.8 22 178-199 1021-1042(1080)
96 1hlo_A Protein (transcription 54.5 11 0.00038 27.6 3.4 19 176-194 60-78 (80)
97 1a93_B MAX protein, coiled coi 54.3 26 0.00089 23.0 4.7 27 171-197 5-31 (34)
98 3cve_A Homer protein homolog 1 54.0 46 0.0016 24.9 6.7 24 176-199 45-68 (72)
99 3c3f_A Alpha/beta peptide with 53.1 21 0.00072 23.4 4.1 31 167-197 2-32 (34)
100 3a2a_A Voltage-gated hydrogen 52.8 43 0.0015 24.2 6.1 34 161-201 20-53 (58)
101 2wvr_A Geminin; DNA replicatio 52.6 40 0.0014 29.9 7.2 22 161-182 124-145 (209)
102 3hnw_A Uncharacterized protein 52.5 44 0.0015 27.2 7.1 13 161-173 77-89 (138)
103 1kd8_A GABH AIV, GCN4 acid bas 52.3 18 0.00062 24.0 3.8 29 168-196 3-31 (36)
104 3vmx_A Voltage-gated hydrogen 51.8 58 0.002 22.7 7.5 18 183-200 28-45 (48)
105 3qh9_A Liprin-beta-2; coiled-c 51.5 47 0.0016 25.5 6.6 39 159-197 26-64 (81)
106 3cvf_A Homer-3, homer protein 51.3 48 0.0016 25.1 6.6 25 175-199 50-74 (79)
107 2wuj_A Septum site-determining 50.9 16 0.00056 25.5 3.7 27 159-185 27-53 (57)
108 1jcd_A Major outer membrane li 50.6 38 0.0013 23.8 5.5 24 171-194 9-32 (52)
109 1p9i_A Cortexillin I/GCN4 hybr 50.4 20 0.00067 22.7 3.5 23 164-186 4-26 (31)
110 1l8d_A DNA double-strand break 49.8 68 0.0023 24.1 7.4 38 160-197 65-102 (112)
111 3a2a_A Voltage-gated hydrogen 49.7 50 0.0017 23.9 6.0 25 159-183 25-49 (58)
112 3nmd_A CGMP dependent protein 49.7 79 0.0027 23.7 7.6 29 171-199 38-66 (72)
113 3u06_A Protein claret segregat 49.5 28 0.00097 32.9 6.2 42 158-199 16-57 (412)
114 4ani_A Protein GRPE; chaperone 48.9 36 0.0012 29.9 6.4 34 163-196 63-96 (213)
115 2w6a_A ARF GTPase-activating p 48.5 64 0.0022 23.6 6.6 35 161-195 22-56 (63)
116 3m48_A General control protein 48.4 20 0.00069 23.4 3.5 28 169-196 3-30 (33)
117 3m91_A Proteasome-associated A 48.2 45 0.0015 23.3 5.5 27 162-188 19-45 (51)
118 2r2v_A GCN4 leucine zipper; co 47.8 37 0.0013 22.3 4.7 31 167-197 2-32 (34)
119 3he5_B Synzip2; heterodimeric 47.5 66 0.0022 22.4 6.2 29 168-196 19-47 (52)
120 3c3g_A Alpha/beta peptide with 47.5 30 0.001 22.6 4.1 30 168-197 2-31 (33)
121 2wq1_A General control protein 47.3 34 0.0012 22.3 4.4 29 168-196 2-30 (33)
122 2oa5_A Hypothetical protein BQ 47.2 11 0.00037 30.5 2.5 25 159-183 8-32 (110)
123 3efg_A Protein SLYX homolog; x 46.6 37 0.0013 25.3 5.3 42 160-201 22-63 (78)
124 1m1j_C Fibrinogen gamma chain; 46.3 64 0.0022 30.8 8.1 40 160-199 92-131 (409)
125 3lay_A Zinc resistance-associa 45.5 1.1E+02 0.0039 25.8 8.8 13 133-145 68-80 (175)
126 1uo4_A General control protein 45.5 26 0.00087 23.0 3.6 31 167-197 2-32 (34)
127 1l8d_A DNA double-strand break 45.1 50 0.0017 24.8 6.0 41 160-200 4-44 (112)
128 2fxo_A Myosin heavy chain, car 43.6 1.2E+02 0.0041 24.0 8.7 39 160-198 84-122 (129)
129 3mq9_A Bone marrow stromal ant 43.3 63 0.0021 29.7 7.4 38 160-197 430-467 (471)
130 3oa7_A Head morphogenesis prot 42.9 59 0.002 28.8 6.7 46 159-204 30-75 (206)
131 1a93_B MAX protein, coiled coi 42.8 39 0.0014 22.1 4.2 23 163-185 11-33 (34)
132 1lwu_C Fibrinogen gamma chain; 42.7 42 0.0014 31.1 6.1 29 167-195 27-55 (323)
133 2bni_A General control protein 42.2 28 0.00097 22.8 3.5 30 167-196 2-31 (34)
134 1wle_A Seryl-tRNA synthetase; 42.1 1.1E+02 0.0037 29.7 9.2 48 160-207 117-164 (501)
135 2hy6_A General control protein 42.1 45 0.0015 21.9 4.4 31 167-197 2-32 (34)
136 3plt_A Sphingolipid long chain 42.0 1.1E+02 0.0036 27.5 8.4 24 141-164 96-120 (234)
137 1go4_E MAD1 (mitotic arrest de 41.6 47 0.0016 26.2 5.3 29 160-188 13-41 (100)
138 2wg5_A General control protein 41.4 20 0.00067 28.0 3.2 29 167-195 8-36 (109)
139 3u06_A Protein claret segregat 41.3 1.1E+02 0.0039 28.8 9.0 33 163-195 28-60 (412)
140 2dq0_A Seryl-tRNA synthetase; 41.2 48 0.0016 31.7 6.4 51 161-211 71-121 (455)
141 1ic2_A Tropomyosin alpha chain 41.2 1E+02 0.0035 22.5 10.7 52 146-197 14-65 (81)
142 3hnw_A Uncharacterized protein 41.0 1.4E+02 0.0049 24.2 9.4 30 167-196 97-126 (138)
143 2ocy_A RAB guanine nucleotide 41.0 80 0.0027 26.6 7.0 13 183-195 132-144 (154)
144 2xdj_A Uncharacterized protein 40.8 1.1E+02 0.0039 23.0 10.3 33 162-194 23-55 (83)
145 4ati_A MITF, microphthalmia-as 40.6 17 0.00059 28.8 2.8 36 159-198 74-109 (118)
146 2xdj_A Uncharacterized protein 40.5 1.2E+02 0.004 22.9 8.4 61 138-198 6-66 (83)
147 3oja_A Leucine-rich immune mol 40.3 94 0.0032 28.6 8.1 29 171-199 433-461 (487)
148 2aze_A Transcription factor DP 40.2 63 0.0022 27.3 6.3 15 155-169 22-36 (155)
149 2yy0_A C-MYC-binding protein; 40.0 41 0.0014 23.4 4.3 22 161-182 28-49 (53)
150 1ci6_A Transcription factor AT 40.0 97 0.0033 21.9 7.3 26 160-185 31-56 (63)
151 1hwt_C Protein (heme activator 39.9 11 0.00039 26.6 1.5 23 157-179 56-78 (81)
152 3he4_B Synzip5; heterodimeric 39.8 87 0.003 21.3 5.9 15 158-172 9-23 (46)
153 3ra3_A P1C; coiled coil domain 39.5 38 0.0013 21.0 3.5 23 171-193 5-27 (28)
154 3o0z_A RHO-associated protein 38.6 1.5E+02 0.0051 25.3 8.5 32 162-193 44-75 (168)
155 4ath_A MITF, microphthalmia-as 38.3 92 0.0031 23.8 6.4 25 162-186 52-76 (83)
156 1uii_A Geminin; human, DNA rep 37.9 38 0.0013 26.1 4.2 20 161-180 55-74 (83)
157 1ses_A Seryl-tRNA synthetase; 37.8 42 0.0014 31.6 5.4 49 159-207 64-112 (421)
158 2v4h_A NF-kappa-B essential mo 37.4 99 0.0034 24.9 6.7 20 178-197 88-107 (110)
159 4dci_A Uncharacterized protein 37.4 1.2E+02 0.0039 25.4 7.4 27 159-185 29-55 (150)
160 1fxk_C Protein (prefoldin); ar 36.7 85 0.0029 24.3 6.2 31 162-192 98-128 (133)
161 3coq_A Regulatory protein GAL4 36.1 35 0.0012 24.2 3.6 21 158-178 44-64 (89)
162 1jnm_A Proto-oncogene C-JUN; B 35.7 1.1E+02 0.0037 21.3 8.0 21 176-196 25-45 (62)
163 2wt7_B Transcription factor MA 35.2 1.5E+02 0.0052 22.8 8.6 47 152-198 30-80 (90)
164 3w03_C DNA repair protein XRCC 34.8 99 0.0034 26.7 6.8 31 159-189 145-175 (184)
165 3u59_A Tropomyosin beta chain; 34.2 1.5E+02 0.0052 22.4 10.0 27 161-187 32-58 (101)
166 3q0x_A Centriole protein; cent 34.0 1.9E+02 0.0064 25.7 8.6 54 139-198 164-217 (228)
167 3qne_A Seryl-tRNA synthetase, 34.0 76 0.0026 30.9 6.6 49 161-209 73-121 (485)
168 1t6f_A Geminin; coiled-coil, c 33.5 89 0.003 20.7 4.8 24 170-193 11-34 (37)
169 1pyi_A Protein (pyrimidine pat 33.2 33 0.0011 24.9 3.1 19 158-176 47-65 (96)
170 2ve7_A Kinetochore protein HEC 33.1 74 0.0025 28.9 6.1 35 158-192 184-218 (315)
171 2gkw_A TNF receptor-associated 33.1 71 0.0024 26.3 5.5 32 161-192 2-33 (192)
172 3a7o_A Autophagy protein 16; c 33.0 1.5E+02 0.0051 22.4 6.6 44 157-200 30-73 (75)
173 4b4t_J 26S protease regulatory 32.2 92 0.0031 29.5 6.7 40 160-199 26-65 (405)
174 4etp_A Kinesin-like protein KA 32.1 1.3E+02 0.0044 28.2 7.7 43 154-196 19-61 (403)
175 4ati_A MITF, microphthalmia-as 31.9 73 0.0025 25.1 5.2 27 142-168 27-53 (118)
176 4abm_A Charged multivesicular 31.6 1.1E+02 0.0038 22.7 5.8 22 144-165 41-62 (79)
177 1jcd_A Major outer membrane li 31.0 1.4E+02 0.0047 20.9 6.2 30 161-190 6-35 (52)
178 3pjs_K KCSA, voltage-gated pot 30.5 95 0.0033 25.0 5.8 27 156-182 135-161 (166)
179 1ytz_T Troponin T; muscle, THI 30.1 2E+02 0.0069 22.6 10.5 59 144-202 13-92 (107)
180 3lss_A Seryl-tRNA synthetase; 30.0 1.5E+02 0.005 28.9 7.9 43 168-210 113-155 (484)
181 3q8t_A Beclin-1; autophagy, AT 29.8 1.5E+02 0.005 22.7 6.4 38 161-198 6-43 (96)
182 3w03_C DNA repair protein XRCC 29.7 74 0.0025 27.5 5.2 30 159-188 152-181 (184)
183 3kin_B Kinesin heavy chain; mo 29.5 80 0.0028 24.8 5.0 13 177-189 100-112 (117)
184 2lw1_A ABC transporter ATP-bin 29.5 1.7E+02 0.0058 21.5 7.1 22 161-182 24-45 (89)
185 1ykh_B RNA polymerase II holoe 29.5 1.2E+02 0.0042 24.3 6.2 35 164-198 90-124 (132)
186 3u1c_A Tropomyosin alpha-1 cha 28.8 1.9E+02 0.0066 22.0 9.9 38 145-182 30-67 (101)
187 3mud_A DNA repair protein XRCC 28.8 1.4E+02 0.0049 25.6 6.7 33 152-184 135-167 (175)
188 3a7p_A Autophagy protein 16; c 28.7 2.6E+02 0.009 23.5 8.5 38 160-197 83-120 (152)
189 1lwu_C Fibrinogen gamma chain; 28.6 1.8E+02 0.0063 26.8 7.9 40 160-199 13-52 (323)
190 1hlo_A Protein (transcription 28.3 1.7E+02 0.0057 21.1 6.6 14 183-196 60-73 (80)
191 4b4t_K 26S protease regulatory 28.1 1.3E+02 0.0045 28.4 7.1 39 161-199 51-89 (428)
192 1yke_B RNA polymerase II holoe 27.8 1.3E+02 0.0045 24.8 6.2 35 163-197 89-123 (151)
193 1f5n_A Interferon-induced guan 27.7 3.7E+02 0.013 26.5 10.4 29 151-179 504-532 (592)
194 4g1a_A AQ-C16C19 peptide; heli 27.5 29 0.00099 22.1 1.6 25 161-185 2-26 (32)
195 3trt_A Vimentin; cytoskeleton, 27.2 1.7E+02 0.0057 20.7 8.7 24 170-193 53-76 (77)
196 4h22_A Leucine-rich repeat fli 26.9 2.1E+02 0.007 22.8 6.9 40 159-198 37-83 (103)
197 3qh9_A Liprin-beta-2; coiled-c 26.8 2E+02 0.007 21.9 6.6 33 166-198 47-79 (81)
198 4b4t_K 26S protease regulatory 26.7 71 0.0024 30.2 4.9 35 160-194 57-91 (428)
199 1fzc_C Fibrin; blood coagulati 26.7 21 0.0007 33.1 1.2 33 162-194 7-39 (319)
200 1gk6_A Vimentin; intermediate 26.7 77 0.0026 22.1 4.0 18 166-183 7-24 (59)
201 2wt7_A Proto-oncogene protein 26.7 1.6E+02 0.0056 20.5 8.0 25 174-198 24-48 (63)
202 2z5i_A TM, general control pro 26.5 1.6E+02 0.0055 20.3 6.0 35 163-197 9-43 (52)
203 1g6u_A Domain swapped dimer; d 26.4 1.2E+02 0.0041 20.8 4.7 19 179-197 26-44 (48)
204 2wg5_A General control protein 25.8 63 0.0022 25.0 3.7 25 176-200 10-34 (109)
205 1zxa_A CGMP-dependent protein 25.1 1.2E+02 0.0041 22.3 4.9 33 168-200 20-52 (67)
206 3gpv_A Transcriptional regulat 25.1 1.1E+02 0.0039 24.3 5.3 37 161-197 97-133 (148)
207 1rtm_1 Mannose-binding protein 24.5 82 0.0028 24.0 4.1 20 161-180 6-25 (149)
208 3rrk_A V-type ATPase 116 kDa s 24.2 1.4E+02 0.0049 26.4 6.2 33 163-195 96-128 (357)
209 3ghg_C Fibrinogen gamma chain; 24.0 2.6E+02 0.009 26.8 8.3 38 162-199 94-131 (411)
210 1i84_S Smooth muscle myosin he 23.8 2.1E+02 0.0073 30.1 8.3 9 6-14 504-512 (1184)
211 2pnv_A Small conductance calci 23.2 1.1E+02 0.0038 20.7 4.0 25 162-186 12-36 (43)
212 2zdi_C Prefoldin subunit alpha 22.8 1.3E+02 0.0044 24.0 5.1 37 161-197 107-143 (151)
213 3viq_B Mating-type switching p 22.8 1E+02 0.0036 23.6 4.3 19 160-178 9-27 (85)
214 1g6u_A Domain swapped dimer; d 22.7 1.2E+02 0.004 20.8 4.1 23 161-183 22-44 (48)
215 1fmh_B General control protein 22.5 1.6E+02 0.0054 18.8 5.0 19 178-196 6-24 (33)
216 2l5g_A GPS2 protein, G protein 22.3 99 0.0034 20.6 3.5 17 159-175 15-31 (38)
217 3u59_A Tropomyosin beta chain; 22.2 2.6E+02 0.0087 21.1 9.9 29 150-178 35-63 (101)
218 1deq_A Fibrinogen (alpha chain 22.1 2.7E+02 0.0091 26.8 7.9 38 159-196 113-157 (390)
219 3q0x_A Centriole protein; cent 22.1 2.1E+02 0.0071 25.4 6.7 30 167-196 172-201 (228)
220 1wle_A Seryl-tRNA synthetase; 22.1 5.4E+02 0.019 24.9 10.5 32 167-198 117-148 (501)
221 2oto_A M protein; helical coil 22.0 2.4E+02 0.0083 22.6 6.7 25 162-186 53-77 (155)
222 1t2k_D Cyclic-AMP-dependent tr 21.9 2E+02 0.0068 19.8 7.8 20 177-196 26-45 (61)
223 3vkg_A Dynein heavy chain, cyt 21.9 2.9E+02 0.0098 33.2 9.4 41 158-198 2027-2067(3245)
224 4emc_A Monopolin complex subun 21.8 1.9E+02 0.0064 25.3 6.2 15 161-175 43-57 (190)
225 1wlq_A Geminin; coiled-coil; 2 21.7 1.2E+02 0.004 23.3 4.4 19 161-179 47-65 (83)
226 2zqm_A Prefoldin beta subunit 21.7 2.2E+02 0.0075 21.1 6.0 22 165-186 83-104 (117)
227 1rtm_1 Mannose-binding protein 21.7 1.1E+02 0.0036 23.4 4.3 24 164-187 2-25 (149)
228 3azd_A Short alpha-tropomyosin 21.7 30 0.001 22.5 0.9 28 160-187 5-32 (37)
229 1deb_A APC protein, adenomatou 21.2 2.3E+02 0.0078 20.1 6.1 23 176-198 6-28 (54)
230 2v71_A Nuclear distribution pr 20.8 4E+02 0.014 22.9 10.3 30 163-192 92-121 (189)
231 3ni0_A Bone marrow stromal ant 20.8 2.9E+02 0.0099 21.8 6.6 20 179-198 66-85 (99)
232 3htk_A Structural maintenance 20.7 2E+02 0.0069 19.3 7.4 13 160-172 13-25 (60)
233 3tul_A Cell invasion protein S 20.7 1.9E+02 0.0064 24.6 5.8 41 159-199 76-126 (158)
234 1r8e_A Multidrug-efflux transp 20.5 2.3E+02 0.008 23.7 6.6 37 160-196 80-116 (278)
235 3eff_K Voltage-gated potassium 20.5 1.8E+02 0.0061 22.4 5.4 17 162-178 114-130 (139)
236 2zdi_C Prefoldin subunit alpha 20.5 1.9E+02 0.0065 23.0 5.7 35 162-196 101-135 (151)
237 1gmj_A ATPase inhibitor; coile 20.3 2.9E+02 0.01 21.1 8.9 44 142-185 32-77 (84)
238 4dzo_A Mitotic spindle assembl 20.3 1.4E+02 0.0048 23.8 4.8 30 160-189 5-34 (123)
239 3k29_A Putative uncharacterize 20.2 4.1E+02 0.014 22.7 10.0 25 158-182 77-101 (169)
240 1lq7_A Alpha3W; three helix bu 20.1 1E+02 0.0036 22.3 3.6 43 161-203 4-48 (67)
No 1
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.56 E-value=1.6e-14 Score=104.56 Aligned_cols=60 Identities=35% Similarity=0.395 Sum_probs=58.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 138 KR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
||++|++|||+||++||+|||+|+.+||.++..|+.+|..|..++..|..|+..|++.|.
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999999999999999999999999884
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.55 E-value=2.7e-14 Score=104.37 Aligned_cols=63 Identities=30% Similarity=0.421 Sum_probs=60.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 137 SKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 137 eKR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
+||++|+.|||+||++||+|||+|+.+|+.++..|+.+|..|...+..|..|...|++.|..|
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~H 63 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAAH 63 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 378899999999999999999999999999999999999999999999999999999998754
No 3
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.51 E-value=2.6e-14 Score=103.89 Aligned_cols=62 Identities=27% Similarity=0.349 Sum_probs=54.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 138 KR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
|+.+|..|||+||++||+|||+|+.+||.++..|+.+|..|..++..|..|+..|++.|..|
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~~H 62 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVMNH 62 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46788899999999999999999999999999999999999999999999999999998654
No 4
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.48 E-value=6.7e-14 Score=100.47 Aligned_cols=51 Identities=37% Similarity=0.472 Sum_probs=46.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAE 188 (264)
Q Consensus 138 KR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~E 188 (264)
||++|+++||+||++||.|||+|+.+||.+|..|+.+|..|..++..|..+
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999888777543
No 5
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=99.31 E-value=4.6e-12 Score=92.85 Aligned_cols=60 Identities=25% Similarity=0.268 Sum_probs=52.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 138 KR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
|+.+++.|||.||++||+|||+++.+|+.+++.|+.+|..|..++..|..|+..||+.|.
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677888999999999999999999999999999999999999999999999999999875
No 6
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.17 E-value=4.5e-11 Score=87.82 Aligned_cols=46 Identities=35% Similarity=0.293 Sum_probs=39.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 141 RRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVL 186 (264)
Q Consensus 141 rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~ 186 (264)
++..|||+||++||+||++|+.+||.++..|+.+|..|..++..|.
T Consensus 12 ~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 12 LKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345699999999999999999999999999999999887665553
No 7
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.96 E-value=2.5e-09 Score=81.89 Aligned_cols=62 Identities=24% Similarity=0.229 Sum_probs=55.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 138 KR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
+-..|..||.+||++||+++|+...+++.++..|+.+|..|+.+|..|..|+..||+.|..+
T Consensus 15 ~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q~ 76 (78)
T 1gu4_A 15 EYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 44445689999999999999999999999999999999999999999999999999988654
No 8
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.94 E-value=6.3e-09 Score=81.14 Aligned_cols=63 Identities=24% Similarity=0.220 Sum_probs=57.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 024703 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (264)
Q Consensus 138 KR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~ 200 (264)
+-..|..||.+||++||+++|+...+++.++..|+.+|..|+.+|..|..|+..||+.|..+.
T Consensus 15 ~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p 77 (87)
T 1hjb_A 15 EYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP 77 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 345566899999999999999999999999999999999999999999999999999998653
No 9
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.85 E-value=1.1e-08 Score=76.89 Aligned_cols=57 Identities=23% Similarity=0.152 Sum_probs=44.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 140 RRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 140 ~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
.+|...||.|++.+|+||++||.+||.+|..|+..+..|......|..++..|+..+
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357799999999999999999999999999998877766555555555555555444
No 10
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=98.69 E-value=3.3e-08 Score=68.06 Aligned_cols=40 Identities=33% Similarity=0.445 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 158 KMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 158 KeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
|+|+.+||.+++.|+..|.+|.+++..|++||++|||.|+
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 6899999999999999999999999999999999999986
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.38 E-value=3e-06 Score=66.57 Aligned_cols=64 Identities=22% Similarity=0.244 Sum_probs=59.7
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 136 ISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 136 eeKR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
..|.+||-++||.+|+.||.||......||..+..|..+...|...+..+..|-..+|+++...
T Consensus 25 ~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 25 RLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567789999999999999999999999999999999999999999999999999999998765
No 12
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.27 E-value=2.2e-08 Score=80.80 Aligned_cols=58 Identities=31% Similarity=0.356 Sum_probs=41.6
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 136 ISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLR 193 (264)
Q Consensus 136 eeKR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LR 193 (264)
..|.+||.++||.+|+.||.||.+.+.+||.++..|.++...|......+..|...||
T Consensus 35 ~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk 92 (107)
T 3a5t_A 35 QLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALR 92 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSS
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588899999999999999999999999887776655555555444433333333333
No 13
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=96.48 E-value=0.0011 Score=52.29 Aligned_cols=30 Identities=27% Similarity=0.347 Sum_probs=25.2
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 024703 136 ISKKRRRQLRNRDAAVRSRERKKMYVKDLE 165 (264)
Q Consensus 136 eeKR~rRllRNReSAqrSRqRKKeYVeeLE 165 (264)
..|..||..|||.||++||+||.+.+..|+
T Consensus 60 ~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~ 89 (92)
T 1skn_P 60 LIRKIRRRGKNKVAARTCRQRRTDRHDKMS 89 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Confidence 456678999999999999999998877765
No 14
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=94.04 E-value=0.29 Score=35.68 Aligned_cols=43 Identities=28% Similarity=0.349 Sum_probs=29.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 143 QLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 143 llRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
.-|||.++++||.|=|..++ ..+.....-..||..||-.+.+.
T Consensus 6 ryknr~asrk~rakfkn~lq--------------h~r~vaaaks~en~rlr~l~kqm 48 (63)
T 2c9l_Y 6 RYKNRVAARKSRAKFKQLLQ--------------HYREVAAAKSSENDRLRLLLKQM 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHhhcccchHHHHHHHHh
Confidence 46899999999999776443 33344445567788887776543
No 15
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=91.56 E-value=0.014 Score=46.01 Aligned_cols=24 Identities=33% Similarity=0.374 Sum_probs=20.1
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHH
Q 024703 136 ISKKRRRQLRNRDAAVRSRERKKM 159 (264)
Q Consensus 136 eeKR~rRllRNReSAqrSRqRKKe 159 (264)
-.+..||.-|||.||+.||+||..
T Consensus 64 lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 64 LVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Confidence 446668899999999999999853
No 16
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=88.78 E-value=0.86 Score=32.13 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 166 MKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 166 ~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
..+..|..||..|+.++..|..++..|+.+|..
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467889999999999999999999999999864
No 17
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=88.72 E-value=0.67 Score=34.14 Aligned_cols=34 Identities=41% Similarity=0.430 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRF 194 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRq 194 (264)
|+.|-.-...|..|.+.|+.+++.|+.||..||.
T Consensus 29 iQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 29 VQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 4444444456777778888899999999999985
No 18
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=88.33 E-value=0.61 Score=31.08 Aligned_cols=30 Identities=33% Similarity=0.294 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCVLAEN 189 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L~~EN 189 (264)
++.+||.||..|..++..|..++..|...+
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 467889999988888888887776665544
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.92 E-value=3.5 Score=38.89 Aligned_cols=45 Identities=18% Similarity=0.091 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 155 ERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 155 qRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
+.|++-.+.|+.++..++.+....++++..+..|++.++++++..
T Consensus 533 ~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 533 DAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 334455566667777788877888888888888888888777653
No 20
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=87.73 E-value=3 Score=34.26 Aligned_cols=41 Identities=20% Similarity=0.174 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
..|++|+.+++.|.++.+.....+..|+.+|+.|..++...
T Consensus 71 ~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~ 111 (121)
T 3mq7_A 71 KKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADK 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhc
Confidence 34888888888888888888888888888888888887643
No 21
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=87.69 E-value=1.1 Score=33.19 Aligned_cols=31 Identities=10% Similarity=0.096 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 024703 170 YLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (264)
Q Consensus 170 ~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~ 200 (264)
.|+.++..|+.++..|..+|..|+++|....
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555566667777788889999987654
No 22
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=87.14 E-value=4.1 Score=31.40 Aligned_cols=63 Identities=19% Similarity=0.167 Sum_probs=41.9
Q ss_pred hhHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 135 PISKKRRR---QLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 135 ~eeKR~rR---llRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
--.||.+= -.|-|+.++.--.-....+..||.+...|..++..|..++..|..-...+...+.
T Consensus 16 Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~~~ 81 (87)
T 1hjb_A 16 YKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPLL 81 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHh
Confidence 34455542 4455655555555556778999999999999999999999988877777777654
No 23
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=86.98 E-value=0.86 Score=30.00 Aligned_cols=26 Identities=19% Similarity=0.088 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCV 185 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L 185 (264)
++.+||.||..|-.+|..|+.++..|
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 46788999988888888777554443
No 24
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=86.77 E-value=1.1 Score=35.95 Aligned_cols=38 Identities=26% Similarity=0.180 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhcC
Q 024703 163 DLEMKSRYLESECRK--------------LGRLLHCVLAENQSLRFSLQKGN 200 (264)
Q Consensus 163 eLE~KVk~LE~EN~~--------------L~~ql~~L~~EN~~LRqqLq~~~ 200 (264)
+||.++..++.++.+ |...+..|.+||+.|++.-.+..
T Consensus 41 ~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 41 ELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455566655555543 44566677788888887765543
No 25
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=86.77 E-value=1.5 Score=29.25 Aligned_cols=28 Identities=25% Similarity=0.182 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCVLA 187 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L~~ 187 (264)
++.+||.||+.|-.++..|+.++..|..
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4678888888888888877766655543
No 26
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=85.22 E-value=1 Score=29.49 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHCV 185 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~L 185 (264)
+.+||.||..|-.+|..|+..+..|
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RL 26 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARL 26 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHH
Confidence 5678888888888888777655544
No 27
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=84.80 E-value=1.2 Score=32.95 Aligned_cols=35 Identities=14% Similarity=0.187 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 158 KMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSL 192 (264)
Q Consensus 158 KeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~L 192 (264)
-.||..|+.+++.|+.+..+|+.+...|..+...|
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47999999999999999999988888888777655
No 28
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=84.54 E-value=3.3 Score=31.83 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
+++|..+...|.+++..++.....|..||..|++...
T Consensus 29 ieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~ 65 (81)
T 2jee_A 29 IEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3444444444444444444444457778888877653
No 29
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=84.33 E-value=8.8 Score=32.96 Aligned_cols=56 Identities=21% Similarity=0.217 Sum_probs=44.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 144 LRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 144 lRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
.--=+.=++.|.+..+.+.+|+.++..|+.++.+++..+..+..+|..|-.++...
T Consensus 75 Qa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~l 130 (168)
T 3o0z_A 75 QAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHS 130 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334456778888899999999999999999999888888888888887776544
No 30
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=84.11 E-value=3.1 Score=31.26 Aligned_cols=38 Identities=13% Similarity=0.072 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
+++.+||.|+...+..+.+|...+.....+...|+.+|
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql 51 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELI 51 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888999988888877777655554444444444443
No 31
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=83.54 E-value=2.4 Score=27.28 Aligned_cols=28 Identities=25% Similarity=0.184 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHCVLAE 188 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~L~~E 188 (264)
+..||..+.+-+.+|-+|.+.+.+|..|
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 5678888988899999998888888766
No 32
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=83.46 E-value=4.5 Score=30.02 Aligned_cols=48 Identities=17% Similarity=0.087 Sum_probs=31.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 144 LRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLR 193 (264)
Q Consensus 144 lRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LR 193 (264)
-|-|..+.-..- ...|.+|+.....+..+|..|..++..|..||..||
T Consensus 23 fReRK~~~i~~L--E~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 23 FRKRKEDHLKAL--ETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344444433333 244677888778888888888888888888887765
No 33
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=83.37 E-value=1.6 Score=28.69 Aligned_cols=26 Identities=12% Similarity=0.024 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCV 185 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L 185 (264)
++.+||.||+.|-.++..|+..+..|
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 46788888888887777776555443
No 34
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=82.63 E-value=2.2 Score=32.45 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~ 200 (264)
.||..|+.+.. .|...+..|..+|..|+++|+...
T Consensus 52 ~YI~~L~~~~~-------~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 52 AYILSVQAEEQ-------KLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55555555544 444455566677788887776553
No 35
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=82.11 E-value=3.9 Score=28.33 Aligned_cols=34 Identities=26% Similarity=0.262 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 163 DLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 163 eLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
+||.||..|+.....|+-++..|.+|...-.++|
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~Kl 35 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKM 35 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999988876554444
No 36
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=81.52 E-value=14 Score=29.89 Aligned_cols=46 Identities=17% Similarity=0.134 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 154 RERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 154 RqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
...-+.||..|+.+|..|+.++..-+...+....||..||..+...
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455579999999999999999998888888999999999888643
No 37
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=81.21 E-value=6.3 Score=27.70 Aligned_cols=42 Identities=19% Similarity=0.128 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~ 200 (264)
..+.+|..++..|...|.+|...+.....+...|+.+|...+
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344568888889999999999999999999999998886543
No 38
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=81.12 E-value=15 Score=27.29 Aligned_cols=55 Identities=22% Similarity=0.135 Sum_probs=35.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 144 LRNRDAAVRSRERKKMYVKDLEMKS----------RYLESE---CRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 144 lRNReSAqrSRqRKKeYVeeLE~KV----------k~LE~E---N~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
.....+-++-|.+=..++..|..-| ..|..- +..|+.+++.|..|+..|+..++.
T Consensus 8 ~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 8 TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555666567777776633 334432 466788888888888888888765
No 39
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=80.98 E-value=2.1 Score=28.21 Aligned_cols=26 Identities=23% Similarity=0.132 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCV 185 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L 185 (264)
.+.+||.||+.|-.+|..|..++..|
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL 27 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARL 27 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 46788888888888888777665544
No 40
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=80.93 E-value=2.9 Score=31.76 Aligned_cols=20 Identities=15% Similarity=0.087 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024703 176 RKLGRLLHCVLAENQSLRFS 195 (264)
Q Consensus 176 ~~L~~ql~~L~~EN~~LRqq 195 (264)
..|+.+.+.+..+...|+++
T Consensus 55 ~~L~~~~~~l~~~~~~L~~~ 74 (88)
T 1nkp_A 55 LSVQAEEQKLISEEDLLRKR 74 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 41
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=80.49 E-value=3.2 Score=27.12 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHCV 185 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~L 185 (264)
+.+||.||+.|-.+|..|+.++..|
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RL 26 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARI 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5678888888888887777555443
No 42
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=79.99 E-value=3.4 Score=27.00 Aligned_cols=25 Identities=20% Similarity=-0.019 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHCV 185 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~L 185 (264)
+.+||.||+.|-.++..|..++..|
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARN 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHH
Confidence 5678888888877777776555443
No 43
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=79.65 E-value=2.4 Score=27.89 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCV 185 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L 185 (264)
++.+||.||+.|-.++..|...+..|
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RL 27 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARI 27 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHH
Confidence 46778888888887777776555443
No 44
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=79.35 E-value=3.1 Score=31.14 Aligned_cols=33 Identities=24% Similarity=0.287 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 158 KMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 158 KeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
..||..|+.+.+.++.++ ..|..+|..|+++|.
T Consensus 46 ~~yI~~L~~~~~~l~~e~-------~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQI-------DQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Confidence 367777776666555554 555566777777765
No 45
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=79.19 E-value=4 Score=30.55 Aligned_cols=22 Identities=14% Similarity=0.024 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024703 175 CRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 175 N~~L~~ql~~L~~EN~~LRqqL 196 (264)
+..|+.+.+.+..|+..||.+.
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~ 70 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQ 70 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666554
No 46
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=77.65 E-value=3 Score=27.43 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCV 185 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L 185 (264)
++.+||.||+.|=.+|..|+..+..|
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RL 27 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARI 27 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 35678888888777777776555443
No 47
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=77.39 E-value=4 Score=30.92 Aligned_cols=32 Identities=31% Similarity=0.318 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLR 193 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LR 193 (264)
++||.||..|+.....|+-++..|.+|...-.
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ 34 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYESMQ 34 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999988888888888887765433
No 48
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=76.46 E-value=2.3 Score=29.44 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 158 KMYVKDLEMKSRYLESECRKLGRLL 182 (264)
Q Consensus 158 KeYVeeLE~KVk~LE~EN~~L~~ql 182 (264)
+.|++.||.++..|+..+..|+..+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999998888887654
No 49
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=76.19 E-value=5.9 Score=27.14 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLH 183 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~ 183 (264)
....+||.++..|+.||+-|++.+.
T Consensus 17 ~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 17 NKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 4567999999999999999987764
No 50
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=75.91 E-value=4.4 Score=30.18 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 158 KMYVKDLEMKSRYLESECRKLGRLLHCV 185 (264)
Q Consensus 158 KeYVeeLE~KVk~LE~EN~~L~~ql~~L 185 (264)
-.||..|+.+++.|+.++..|+..++..
T Consensus 49 i~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 49 IDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4899999999999999999998877643
No 51
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=74.63 E-value=6.5 Score=30.23 Aligned_cols=37 Identities=11% Similarity=0.066 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFS 195 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqq 195 (264)
.||.+|..++..+..++.+|..++..+..+...+|.+
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555666666666666666666666666666666654
No 52
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=74.56 E-value=2.6 Score=26.28 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 168 SRYLESECRKLGRLLHCVLAENQSL 192 (264)
Q Consensus 168 Vk~LE~EN~~L~~ql~~L~~EN~~L 192 (264)
++.|.+.|.+|++.+..|.-|...|
T Consensus 2 irrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHh
Confidence 3455566666666666666666555
No 53
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=74.48 E-value=11 Score=26.05 Aligned_cols=37 Identities=27% Similarity=0.283 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLESECRKLGRL-------LHCVLAENQSLRFSL 196 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~q-------l~~L~~EN~~LRqqL 196 (264)
.+.+||..|..|+.+|..|+++ +..|..|...||..+
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 4677888888888888777543 456788888888765
No 54
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=73.38 E-value=21 Score=28.17 Aligned_cols=54 Identities=20% Similarity=0.113 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024703 148 DAAVRSRERKKMYVKDLEMKSRY--LES-------------------ECRKLGRLLHCVLAENQSLRFSLQKGNA 201 (264)
Q Consensus 148 eSAqrSRqRKKeYVeeLE~KVk~--LE~-------------------EN~~L~~ql~~L~~EN~~LRqqLq~~~~ 201 (264)
++-.+.|.|=++.++.||.++.. |+. -.++.++.+..|++|+..||.++.....
T Consensus 22 ~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 22 EELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555566666677778877755 111 1245678999999999999999987765
No 55
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=72.98 E-value=11 Score=28.81 Aligned_cols=36 Identities=19% Similarity=0.078 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRF 194 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRq 194 (264)
+-++.||.|++++=..+.-|+..+..|..+|..|.+
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~ 41 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888877665555555555554444444443
No 56
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=71.75 E-value=4.2 Score=31.06 Aligned_cols=30 Identities=20% Similarity=0.103 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 168 SRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 168 Vk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
|..|..++.+|..++.+|..||..||+...
T Consensus 17 VevLKe~I~EL~e~~~qLE~EN~~Lk~~as 46 (78)
T 1dip_A 17 VEILKEQIRELVEKNSQLERENTLLKTLAS 46 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 455666677777777778888999988753
No 57
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=70.94 E-value=16 Score=27.26 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 158 KMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 158 KeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
...+..|+.+...++.+...|..++..+..+-..|+..|+.
T Consensus 64 ~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 64 DELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777788888888888888888888888888764
No 58
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=70.48 E-value=14 Score=27.84 Aligned_cols=42 Identities=21% Similarity=0.152 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 158 KMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 158 KeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
...+..|+.+...++.+...|..++..+..+-..|+..|+..
T Consensus 69 ~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 69 DKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777888888888888888888888888888754
No 59
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=70.47 E-value=5.2 Score=36.34 Aligned_cols=42 Identities=19% Similarity=0.128 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~ 200 (264)
..+.+|+.++..|+.+|..|...++.+..|...||.+|....
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345667777777777777777777777777777777776543
No 60
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=70.28 E-value=2.9 Score=33.86 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 024703 176 RKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 176 ~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
.+|..++++|+.||..||++|..
T Consensus 11 EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 11 EEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 46778888889999999999965
No 61
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=70.22 E-value=31 Score=26.50 Aligned_cols=34 Identities=15% Similarity=0.101 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSL 192 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~L 192 (264)
.-...++.+++..+..|..|...+..+..+-..|
T Consensus 38 ~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 38 TDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455566666666666665555555554443
No 62
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=69.76 E-value=27 Score=26.22 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=35.7
Q ss_pred hHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 136 ISKKRR---RQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVL 186 (264)
Q Consensus 136 eeKR~r---RllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~ 186 (264)
-.||.+ -..|-|+.++.-=.--...+..|+.+...|..++..|...+..|.
T Consensus 17 ~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 17 KIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 244566666555555667788888888888888888888887765
No 63
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=69.07 E-value=7.1 Score=25.67 Aligned_cols=24 Identities=17% Similarity=0.030 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHC 184 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~ 184 (264)
+.+||.||+.|-.++..|..++..
T Consensus 3 MnQledKvEel~~~~~~l~nEv~R 26 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELAR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHH
Confidence 566777777766666665544443
No 64
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=68.70 E-value=5.1 Score=28.65 Aligned_cols=15 Identities=20% Similarity=0.213 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 024703 182 LHCVLAENQSLRFSL 196 (264)
Q Consensus 182 l~~L~~EN~~LRqqL 196 (264)
+..|..|-..+|.-+
T Consensus 33 lskLE~ets~mKevl 47 (54)
T 1deb_A 33 LTKLETEASNMKEVL 47 (54)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHH
Confidence 334444444444433
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=68.17 E-value=37 Score=31.38 Aligned_cols=50 Identities=16% Similarity=-0.025 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 148 DAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 148 eSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
..-+.-|.|.+++++..-.+.+.+++++.+++..++.+..+-..-++.++
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
T 3oja_A 424 VEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQ 473 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHH
Confidence 33344555566666666666667777777777666666555555555554
No 66
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=67.02 E-value=5.9 Score=30.26 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 158 KMYVKDLEMKSRYLESECRKLGRLL 182 (264)
Q Consensus 158 KeYVeeLE~KVk~LE~EN~~L~~ql 182 (264)
|+.|.+|+.++.+||.||.-|+.-.
T Consensus 21 Ke~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 21 KEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5778899999999999998887543
No 67
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=66.19 E-value=8.1 Score=24.85 Aligned_cols=28 Identities=25% Similarity=0.196 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 162 KDLEMKSRYLESECRKLGRLLHCVLAEN 189 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L~~ql~~L~~EN 189 (264)
..||..++.|..-.++|++++..|..-.
T Consensus 2 srlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888888888888887776543
No 68
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=66.10 E-value=3.3 Score=28.99 Aligned_cols=23 Identities=17% Similarity=0.184 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024703 157 KKMYVKDLEMKSRYLESECRKLG 179 (264)
Q Consensus 157 KKeYVeeLE~KVk~LE~EN~~L~ 179 (264)
++.|++.||.++..|+..+..|.
T Consensus 47 ~~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 47 KRARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh
Confidence 34899999999988887776653
No 69
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=65.75 E-value=6.5 Score=35.68 Aligned_cols=39 Identities=13% Similarity=0.110 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 157 KKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFS 195 (264)
Q Consensus 157 KKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqq 195 (264)
++..+..|+.+.+.|..+.+++++++..|..|+..|++.
T Consensus 59 L~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sP 97 (251)
T 3m9b_A 59 LEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQP 97 (251)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 467789999999999999999999999999999999875
No 70
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=65.57 E-value=28 Score=32.76 Aligned_cols=30 Identities=27% Similarity=0.217 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 167 KSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 167 KVk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
+.+.+++++.+|+++++........|++.+
T Consensus 538 ~~~~~~~~~~~le~~~~~~~~~~~~l~~e~ 567 (597)
T 3oja_B 538 ETEDLEQENIALEKQLDNKRAKQAELRQET 567 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHhhhHHHHHHHhhhhhHHHHHHHHH
Confidence 333333444444444444444444444443
No 71
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=65.30 E-value=2.6 Score=37.31 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhc
Q 024703 163 DLEMKSRYLESECRKLGR---LLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 163 eLE~KVk~LE~EN~~L~~---ql~~L~~EN~~LRqqLq~~ 199 (264)
.|..+.+.|++||.+|+. +++.+..||.+||..|...
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~~~ 62 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQLESEVADLKKENKDLKESLDIT 62 (255)
T ss_dssp ---CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 444556666777766654 4457888999999998654
No 72
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=64.95 E-value=9.4 Score=26.72 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024703 174 ECRKLGRLLHCVLAENQSLRFSLQKGNA 201 (264)
Q Consensus 174 EN~~L~~ql~~L~~EN~~LRqqLq~~~~ 201 (264)
....|..++..|..||..|+.++.....
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888899999999988876543
No 73
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=64.68 E-value=0.097 Score=41.15 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=17.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q 024703 138 KKRRRQLRNRDAAVRSRERKK 158 (264)
Q Consensus 138 KR~rRllRNReSAqrSRqRKK 158 (264)
+..||.-+||.||+.||+||.
T Consensus 66 rdiRRRgKNkvAAqnCRKRKl 86 (90)
T 2lz1_A 66 RDIRRRGKNKVAAQNCRKRKL 86 (90)
T ss_dssp HHHHHHSCSCCCCCCCSCCCC
T ss_pred HHHHHhhhhHHHHHHcchhhc
Confidence 445778899999999999984
No 74
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=64.17 E-value=47 Score=25.52 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 146 NRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 146 NReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
-.+.|..--..-..-+..+|.+....+.++..|+++++.+..+...+..+|
T Consensus 17 e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L 67 (101)
T 3u1c_A 17 DKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEEL 67 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444433444444555555555666666666666665555554444444
No 75
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=63.18 E-value=13 Score=23.56 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 162 KDLEMKSRYLESECRKLGRLLHCVL 186 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L~~ql~~L~ 186 (264)
+.||.|+..|+...+.|.+++..|.
T Consensus 4 ealekkcaalesklqalekkleale 28 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888888888888887777654
No 76
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=62.87 E-value=12 Score=33.14 Aligned_cols=58 Identities=16% Similarity=0.087 Sum_probs=29.0
Q ss_pred CChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 133 DDPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 133 dd~eeKR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
-.|..||.+|++.-=.-=.+.|+-|..-++++=.+.+ .+..+++++..||+.++++|.
T Consensus 115 ~kP~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e-------~~~~~i~ql~~En~~le~~Ie 172 (250)
T 2ve7_C 115 LCPKAKRTSRFLSGIINFIHFREACRETYMEFLWQYK-------SSADKMQQLNAAHQEALMKLE 172 (250)
T ss_dssp HSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHHSCC
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 3566788888875555445555554443333333333 333444444444444444443
No 77
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=62.70 E-value=26 Score=28.66 Aligned_cols=31 Identities=35% Similarity=0.259 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 167 KSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 167 KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
+++.|+.|+..|.++++...+|...||..-.
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~ 102 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQ 102 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 5778889999999999999999999987764
No 78
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=62.63 E-value=10 Score=35.61 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
.+|+.+++.++.++.+|.+++..-..+-..|-.++
T Consensus 20 ~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~ 54 (403)
T 4etp_A 20 AALKEKIKDTELGMKELNEILIKEETVRRTLHNEL 54 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443333333333333
No 79
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=61.71 E-value=13 Score=27.60 Aligned_cols=30 Identities=33% Similarity=0.351 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 157 KKMYVKDLEMKSRYLESECRKLGRLLHCVL 186 (264)
Q Consensus 157 KKeYVeeLE~KVk~LE~EN~~L~~ql~~L~ 186 (264)
|.+.+.+||..+..-..++++|+.++..++
T Consensus 23 Kde~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 23 KEERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777887777777777777776666543
No 80
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=61.32 E-value=33 Score=26.41 Aligned_cols=40 Identities=20% Similarity=0.212 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 156 RKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 156 RKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
|+++--+.|+ ..+.|..++..|+..+..+..+|..||...
T Consensus 37 RR~AL~eaL~-EN~~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 37 RRKALYEALK-ENEKLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 334444555555555555666666665543
No 81
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=60.71 E-value=14 Score=36.94 Aligned_cols=44 Identities=7% Similarity=0.065 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 154 RERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 154 RqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
...+.+|-++||.++..|+.++..--.+|+.|+.-...+|..++
T Consensus 105 dNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQ 148 (562)
T 3ghg_A 105 DNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMK 148 (562)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666688888888877654333445555544444444443
No 82
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=60.21 E-value=36 Score=40.39 Aligned_cols=65 Identities=11% Similarity=0.122 Sum_probs=46.9
Q ss_pred ChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 134 DPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 134 d~eeKR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
.|-.++.+.+.++-..|++.-+.+++.+.+||.++..|+.+...+..+.+.|+.|-.....+|.+
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~r 2074 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDR 2074 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56555566777777888888888888899999999888888777666666666666555555543
No 83
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=60.18 E-value=17 Score=27.25 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLH 183 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~ 183 (264)
+.|.+||.++...+.+++.|+.++.
T Consensus 40 ~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 40 ALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555544443
No 84
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=60.10 E-value=55 Score=30.04 Aligned_cols=15 Identities=20% Similarity=0.208 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 024703 182 LHCVLAENQSLRFSL 196 (264)
Q Consensus 182 l~~L~~EN~~LRqqL 196 (264)
++.+..|...|.++|
T Consensus 445 ~~~~~~~~~~~~~~~ 459 (471)
T 3mq9_A 445 VEELEGEITTLNHKL 459 (471)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 85
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=60.07 E-value=16 Score=24.20 Aligned_cols=31 Identities=16% Similarity=0.143 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 167 KSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 167 KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
++.+|+....+|-.....|..|..+||..|.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 4667777777777777777777777777664
No 86
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=59.93 E-value=79 Score=26.71 Aligned_cols=38 Identities=18% Similarity=0.005 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
++.|-..+..|.-++..+..++..|+.||..|=++++.
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~ 135 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLK 135 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455556667777888999999999998877654
No 87
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=59.62 E-value=25 Score=26.84 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 157 KKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 157 KKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
+++--+.|+ ..+.|..++.+++..+..|..||..|+..+
T Consensus 26 R~AL~eaL~-EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~ 64 (79)
T 2zxx_A 26 RKALYEALK-ENEKLHKEIEQKDSEIARLRKENKDLAEVA 64 (79)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 234455555555555566666666655443
No 88
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=59.03 E-value=13 Score=26.61 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024703 177 KLGRLLHCVLAENQSLRFS 195 (264)
Q Consensus 177 ~L~~ql~~L~~EN~~LRqq 195 (264)
.|..++..|..+|..|+.+
T Consensus 34 ~Le~~v~~L~~eN~~L~~e 52 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHLENE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444433
No 89
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=58.67 E-value=22 Score=22.79 Aligned_cols=28 Identities=18% Similarity=0.135 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 168 SRYLESECRKLGRLLHCVLAENQSLRFS 195 (264)
Q Consensus 168 Vk~LE~EN~~L~~ql~~L~~EN~~LRqq 195 (264)
+..|.+++..|++.+..|.-|...|+|-
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkqg 31 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4556777777777777777777777763
No 90
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=58.13 E-value=16 Score=24.01 Aligned_cols=31 Identities=16% Similarity=0.088 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 167 KSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 167 KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
+..+||.....|-..-..|+.|...||..|.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 4566777777777777777777777776653
No 91
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=58.11 E-value=26 Score=30.40 Aligned_cols=45 Identities=20% Similarity=0.147 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 154 RERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 154 RqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
..-=|++=.+||..+..++..+..|+.++..|..|...+|.++..
T Consensus 37 qesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~ 81 (189)
T 2v71_A 37 QEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEH 81 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555777777777777888888777777777777766654
No 92
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=56.27 E-value=65 Score=25.73 Aligned_cols=31 Identities=29% Similarity=0.236 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 165 EMKSRYLESECRKLGRLLHCVLAENQSLRFS 195 (264)
Q Consensus 165 E~KVk~LE~EN~~L~~ql~~L~~EN~~LRqq 195 (264)
-.+++.|+.+..+|....+.|..||.+-|++
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~~~~ 94 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELHRQQ 94 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3455555555555555555666778877765
No 93
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=56.05 E-value=67 Score=24.71 Aligned_cols=6 Identities=33% Similarity=0.451 Sum_probs=2.5
Q ss_pred HHHHHH
Q 024703 147 RDAAVR 152 (264)
Q Consensus 147 ReSAqr 152 (264)
|++|+.
T Consensus 25 rEaA~E 30 (84)
T 1gmj_A 25 REQAEE 30 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhH
Confidence 344443
No 94
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=55.90 E-value=29 Score=26.77 Aligned_cols=27 Identities=19% Similarity=0.115 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 169 RYLESECRKLGRLLHCVLAENQSLRFS 195 (264)
Q Consensus 169 k~LE~EN~~L~~ql~~L~~EN~~LRqq 195 (264)
+.|..++..++..+..|..||..|+..
T Consensus 41 ~~Lh~~ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 41 EKLHKEIEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555566666666543
No 95
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=55.51 E-value=50 Score=35.01 Aligned_cols=22 Identities=14% Similarity=0.096 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 024703 178 LGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 178 L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
|+.++..|..||+.||+++...
T Consensus 1021 L~~kv~~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A 1021 TEQLVSELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667778888888776543
No 96
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=54.50 E-value=11 Score=27.59 Aligned_cols=19 Identities=16% Similarity=0.130 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024703 176 RKLGRLLHCVLAENQSLRF 194 (264)
Q Consensus 176 ~~L~~ql~~L~~EN~~LRq 194 (264)
..|+.+++.|..++..|++
T Consensus 60 ~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 60 QYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4555566666666666654
No 97
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=54.31 E-value=26 Score=22.95 Aligned_cols=27 Identities=7% Similarity=0.057 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 171 LESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 171 LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
+.++|...++.+..|..+|..|++++.
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666653
No 98
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=54.02 E-value=46 Score=24.85 Aligned_cols=24 Identities=29% Similarity=0.214 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 176 RKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 176 ~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
.++.+.+..-.-|...||+.|.+.
T Consensus 45 k~~~e~Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 45 KTLLEILDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHh
Confidence 333444444445566666666553
No 99
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=53.14 E-value=21 Score=23.39 Aligned_cols=31 Identities=13% Similarity=0.057 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 167 KSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 167 KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
+..+||....+|-.....|+.|..+||..|.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 4567777777777777777777777777663
No 100
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=52.79 E-value=43 Score=24.21 Aligned_cols=34 Identities=24% Similarity=0.192 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNA 201 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~~ 201 (264)
-..|-.|+.+|+.+|.+. ..|+.+|+..|..++-
T Consensus 20 n~~L~~kv~~Le~~c~e~-------eQEieRL~~LLkqHgl 53 (58)
T 3a2a_A 20 NVQLAAKIQHLEFSCSEK-------EQEIERLNKLLRQHGL 53 (58)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHcCC
Confidence 344445555555444443 3556666766666643
No 101
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=52.63 E-value=40 Score=29.89 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024703 161 VKDLEMKSRYLESECRKLGRLL 182 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql 182 (264)
|+.|+..+..|+.+|.+|+..+
T Consensus 124 ie~l~eEi~~LkeEn~eLkeLa 145 (209)
T 2wvr_A 124 IEQKDNEIARLKKENKELAEVA 145 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444544444444333
No 102
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=52.45 E-value=44 Score=27.22 Aligned_cols=13 Identities=8% Similarity=0.169 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 024703 161 VKDLEMKSRYLES 173 (264)
Q Consensus 161 VeeLE~KVk~LE~ 173 (264)
.+.|+.++..+..
T Consensus 77 ~~~L~~~l~~~~k 89 (138)
T 3hnw_A 77 ADSLSLDIENKDK 89 (138)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444443333
No 103
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=52.25 E-value=18 Score=23.98 Aligned_cols=29 Identities=17% Similarity=0.124 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 168 SRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 168 Vk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
+.+|+.+..+|-.....|..|..+||..|
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 45556666666666666666666666554
No 104
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=51.81 E-value=58 Score=22.75 Aligned_cols=18 Identities=17% Similarity=0.023 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 024703 183 HCVLAENQSLRFSLQKGN 200 (264)
Q Consensus 183 ~~L~~EN~~LRqqLq~~~ 200 (264)
..+..|+.+|+..|..++
T Consensus 28 ~~~eQEieRL~~LLkqHg 45 (48)
T 3vmx_A 28 SEKEQEIERLNKLLKQNG 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHcC
Confidence 334456666666666554
No 105
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=51.46 E-value=47 Score=25.49 Aligned_cols=39 Identities=23% Similarity=0.226 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
+-|.+|.-||..|+.|-.+-..++..-.+|.+.|+++|.
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe 64 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVA 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 345566666666666655555666666666666666654
No 106
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=51.35 E-value=48 Score=25.12 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 175 CRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 175 N~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
..++.+.+..-.-|...||+.|.+.
T Consensus 50 lk~l~e~Ld~KI~eL~elRqgLakL 74 (79)
T 3cvf_A 50 VGRAAQLLDVSLFELSELREGLARL 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3344444445556666677776553
No 107
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=50.94 E-value=16 Score=25.52 Aligned_cols=27 Identities=4% Similarity=0.064 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCV 185 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L 185 (264)
+|+..+...+..|..+|..|+.++..+
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l 53 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNEL 53 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555444
No 108
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=50.57 E-value=38 Score=23.82 Aligned_cols=24 Identities=8% Similarity=0.029 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 171 LESECRKLGRLLHCVLAENQSLRF 194 (264)
Q Consensus 171 LE~EN~~L~~ql~~L~~EN~~LRq 194 (264)
|..+...|..++.+|..+...||.
T Consensus 9 Lss~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 9 ASSDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444443
No 109
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=50.38 E-value=20 Score=22.75 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024703 164 LEMKSRYLESECRKLGRLLHCVL 186 (264)
Q Consensus 164 LE~KVk~LE~EN~~L~~ql~~L~ 186 (264)
|..-+..|+.+|.+|+.++..|.
T Consensus 4 lnallasleaenkqlkakveell 26 (31)
T 1p9i_A 4 LNALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666666665555443
No 110
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=49.77 E-value=68 Score=24.08 Aligned_cols=38 Identities=8% Similarity=0.042 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
.+...+.+++.++.+...|..++..+..+...|+.++.
T Consensus 65 ~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 65 LLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555566666556666665554
No 111
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=49.72 E-value=50 Score=23.89 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLH 183 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~ 183 (264)
..|+.||..+...++|+.+|.+.++
T Consensus 25 ~kv~~Le~~c~e~eQEieRL~~LLk 49 (58)
T 3a2a_A 25 AKIQHLEFSCSEKEQEIERLNKLLR 49 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777788888888877766554
No 112
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=49.71 E-value=79 Score=23.65 Aligned_cols=29 Identities=21% Similarity=-0.049 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 171 LESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 171 LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
.+..+..|..+++....+.+.||.+|-+.
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555555666666666666443
No 113
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=49.47 E-value=28 Score=32.89 Aligned_cols=42 Identities=12% Similarity=0.008 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 158 KMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 158 KeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
++..++|+.++++++.++..+.+++.....+...|-..++..
T Consensus 16 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 16 RQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344567777777888888888877777666666776666654
No 114
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=48.91 E-value=36 Score=29.86 Aligned_cols=34 Identities=12% Similarity=0.095 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 163 DLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 163 eLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
.|+.++..|+.++..|+.++..+.+|...+|.+.
T Consensus 63 ~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~ 96 (213)
T 4ani_A 63 AAKAQIAELEAKLSEMEHRYLRLYADFENFRRRT 96 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444555544444443
No 115
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=48.49 E-value=64 Score=23.64 Aligned_cols=35 Identities=20% Similarity=0.104 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFS 195 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqq 195 (264)
+..-|.|+++|-+-|..|+..+..++.+.+.|...
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQse 56 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAE 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhh
Confidence 44568888888888888988888888888887654
No 116
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=48.42 E-value=20 Score=23.37 Aligned_cols=28 Identities=18% Similarity=0.046 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 169 RYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 169 k~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
.+||....+|-.....|..|...||..|
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4555566666655566666666665554
No 117
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=48.19 E-value=45 Score=23.31 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 162 KDLEMKSRYLESECRKLGRLLHCVLAE 188 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L~~ql~~L~~E 188 (264)
..|..+...|.....+.+.+|..|..+
T Consensus 19 ~~L~~rN~rL~~~L~~AR~el~~Lkee 45 (51)
T 3m91_A 19 DSLAARNSKLMETLKEARQQLLALREE 45 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334344444444444444444443333
No 118
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=47.85 E-value=37 Score=22.26 Aligned_cols=31 Identities=13% Similarity=0.019 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 167 KSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 167 KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
+.++|+....+|-.+...++.|..+||..|.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 4677888888888888888888888887764
No 119
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=47.52 E-value=66 Score=22.36 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 168 SRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 168 Vk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
.-+|++.-+.|.+-+..|..|...|...+
T Consensus 19 nlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 19 NLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555555544
No 120
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=47.52 E-value=30 Score=22.57 Aligned_cols=30 Identities=7% Similarity=0.077 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 168 SRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 168 Vk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
..+||....+|-..-..|+.|...||..|.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 456666666666666666677666666653
No 121
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=47.35 E-value=34 Score=22.29 Aligned_cols=29 Identities=10% Similarity=-0.088 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 168 SRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 168 Vk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
..+||....+|-.+...|..|...||..|
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 46777777777777777777777777765
No 122
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=47.19 E-value=11 Score=30.52 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLH 183 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~ 183 (264)
.-+++|..++..|+-||..|++++.
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3478999999999999999998886
No 123
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=46.56 E-value=37 Score=25.29 Aligned_cols=42 Identities=12% Similarity=-0.188 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNA 201 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~~ 201 (264)
.+.-+|.-+..|.....+.+.++..|..+.+.|+.++.....
T Consensus 22 klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 22 RLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455677788888888999999999999999999999876554
No 124
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=46.26 E-value=64 Score=30.79 Aligned_cols=40 Identities=10% Similarity=-0.031 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
.+..||..+...+.++..|+.++..+....+.|++++...
T Consensus 92 ~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l 131 (409)
T 1m1j_C 92 EIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQL 131 (409)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4555566666666666666666666666666666655443
No 125
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=45.54 E-value=1.1e+02 Score=25.80 Aligned_cols=13 Identities=0% Similarity=-0.051 Sum_probs=6.7
Q ss_pred CChhHHHHHHHHH
Q 024703 133 DDPISKKRRRQLR 145 (264)
Q Consensus 133 dd~eeKR~rRllR 145 (264)
.+++++.+-+.++
T Consensus 68 LT~EQq~ql~~I~ 80 (175)
T 3lay_A 68 LTTEQQATAQKIY 80 (175)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 4555555544443
No 126
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=45.54 E-value=26 Score=23.01 Aligned_cols=31 Identities=13% Similarity=0.109 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 167 KSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 167 KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
+..+||....+|-.+...|+.|..+||..|.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 3466777777777777777777777776653
No 127
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=45.08 E-value=50 Score=24.83 Aligned_cols=41 Identities=15% Similarity=0.228 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~ 200 (264)
.+.+++.+...+..+...|+.....+..+...|+..+....
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~ 44 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELK 44 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666666677777777777777777777777777666543
No 128
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=43.64 E-value=1.2e+02 Score=23.95 Aligned_cols=39 Identities=15% Similarity=0.092 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
.+.+|+.++...+..|..|...-..+..++..|+.+|..
T Consensus 84 ~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 84 KVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555556666666666666777777777777653
No 129
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=43.35 E-value=63 Score=29.66 Aligned_cols=38 Identities=8% Similarity=0.070 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
..+.||.++.+-+..+++|..++..+..+.+.++.++.
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 430 LMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566766666555555666666555555555555543
No 130
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=42.90 E-value=59 Score=28.76 Aligned_cols=46 Identities=15% Similarity=0.113 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGA 204 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~~~g~ 204 (264)
+-++.||......-.+-+.|+.....+++|+..||..|.+..+.-.
T Consensus 30 ~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~s 75 (206)
T 3oa7_A 30 EALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGNTS 75 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCCHH
Confidence 6678888888888888999999999999999999999988765543
No 131
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=42.84 E-value=39 Score=22.09 Aligned_cols=23 Identities=9% Similarity=0.066 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024703 163 DLEMKSRYLESECRKLGRLLHCV 185 (264)
Q Consensus 163 eLE~KVk~LE~EN~~L~~ql~~L 185 (264)
.....+.+|+++|..|..++..|
T Consensus 11 a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHhhHHHHHHHHHHHHHHHHhc
Confidence 34445666667777777666544
No 132
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=42.66 E-value=42 Score=31.13 Aligned_cols=29 Identities=10% Similarity=0.069 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 167 KSRYLESECRKLGRLLHCVLAENQSLRFS 195 (264)
Q Consensus 167 KVk~LE~EN~~L~~ql~~L~~EN~~LRqq 195 (264)
+++.|+.....++.+|+.|......|+.+
T Consensus 27 ~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 27 QIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444443
No 133
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=42.24 E-value=28 Score=22.80 Aligned_cols=30 Identities=13% Similarity=0.141 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 167 KSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 167 KVk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
+..+||....+|-..-+.|..|..+||..|
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 455666667777666667777777776655
No 134
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=42.14 E-value=1.1e+02 Score=29.75 Aligned_cols=48 Identities=8% Similarity=-0.036 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccC
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASLT 207 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~~~g~~t~ 207 (264)
-.+.|-.+++.+..+...|..++..+..+...+-..|.+.....++.+
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~~~~~vP~g 164 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQTHPDVPVG 164 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTCCCS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 344555566666666666666666665555554444444433334433
No 135
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=42.07 E-value=45 Score=21.86 Aligned_cols=31 Identities=13% Similarity=0.062 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 167 KSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 167 KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
++.+|+....+|-..-..|+.|..+||..|.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 4566777777777777777777777776653
No 136
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=41.99 E-value=1.1e+02 Score=27.49 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=13.5
Q ss_pred HHHHHhHHHHH-HHHHHHHHHHHHH
Q 024703 141 RRQLRNRDAAV-RSRERKKMYVKDL 164 (264)
Q Consensus 141 rRllRNReSAq-rSRqRKKeYVeeL 164 (264)
-.-+|||+..- .+|.||+.-..++
T Consensus 96 LK~IR~~E~svqp~R~~R~~l~~~I 120 (234)
T 3plt_A 96 LKSIRNIEASVQPSRDRKEKITDEI 120 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 35678998774 4555554433333
No 137
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=41.58 E-value=47 Score=26.23 Aligned_cols=29 Identities=24% Similarity=0.213 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCVLAE 188 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L~~E 188 (264)
-+..|..++..|+.+|.+|.+++..|..+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~ 41 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQ 41 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777665555443
No 138
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=41.44 E-value=20 Score=27.99 Aligned_cols=29 Identities=21% Similarity=0.117 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 167 KSRYLESECRKLGRLLHCVLAENQSLRFS 195 (264)
Q Consensus 167 KVk~LE~EN~~L~~ql~~L~~EN~~LRqq 195 (264)
+.++|+.+...|++++..+..|+..|++.
T Consensus 8 ~~~~l~~~~~~l~~~i~~lkeel~~L~~~ 36 (109)
T 2wg5_A 8 RMKQLEDKVEELLSKNYHLENEVARLRSP 36 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45667777777777777777777777754
No 139
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=41.32 E-value=1.1e+02 Score=28.77 Aligned_cols=33 Identities=6% Similarity=-0.141 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 163 DLEMKSRYLESECRKLGRLLHCVLAENQSLRFS 195 (264)
Q Consensus 163 eLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqq 195 (264)
.+...++.++++..+....-..|-++.+.||..
T Consensus 28 ~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gn 60 (412)
T 3u06_A 28 QQAAELETCKEQLFQSNMERKELHNTVMDLRDN 60 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 333333444433333334444455555555544
No 140
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=41.23 E-value=48 Score=31.66 Aligned_cols=51 Identities=18% Similarity=0.131 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccch
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASLTKQES 211 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~~~g~~t~~qes 211 (264)
.+.|-.+++.+..+...|..++..+..+...+-..|.+.....++.+..+.
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vP~g~~e~ 121 (455)
T 2dq0_A 71 VDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITHPSVPVGKDEN 121 (455)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSCCCSSGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCCC
Confidence 345556666666666666666666666665555555555444555554443
No 141
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=41.22 E-value=1e+02 Score=22.50 Aligned_cols=52 Identities=25% Similarity=0.235 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 146 NRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 146 NReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
--+.|...-..-..-+...+.+....+.++..|+++++.+..+......+|.
T Consensus 14 e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~ 65 (81)
T 1ic2_A 14 DKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLK 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334443333334445555555666666666666666666666655555543
No 142
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=41.03 E-value=1.4e+02 Score=24.15 Aligned_cols=30 Identities=3% Similarity=-0.015 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 167 KSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 167 KVk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
++..++.++..+.+.+..+..++..|..++
T Consensus 97 el~~~~~k~e~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 97 ELIAAQIKAESSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444444443
No 143
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=41.02 E-value=80 Score=26.58 Aligned_cols=13 Identities=8% Similarity=0.071 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 024703 183 HCVLAENQSLRFS 195 (264)
Q Consensus 183 ~~L~~EN~~LRqq 195 (264)
..++.+...||..
T Consensus 132 ~~lq~ql~~LK~v 144 (154)
T 2ocy_A 132 DTLTLQLKNLKKV 144 (154)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 144
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=40.79 E-value=1.1e+02 Score=22.95 Aligned_cols=33 Identities=9% Similarity=-0.045 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLRF 194 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRq 194 (264)
-+|-.++..|+.++.+|+-++..+..+...|++
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 345555555555555555555555555554444
No 145
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=40.56 E-value=17 Score=28.81 Aligned_cols=36 Identities=14% Similarity=0.167 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
+||..|..+++.|+.+. .+...|..+|..|+.+++.
T Consensus 74 eYIk~Lq~~~~~l~~~~----~~~~~l~~~n~~L~~riqe 109 (118)
T 4ati_A 74 DYIRKLQREQQRAKDLE----NRQKKLEHANRHLLLRVQE 109 (118)
T ss_dssp HHHHHHHHHHHHHHHHC----C------------------
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 45555555555444322 2233455666666666543
No 146
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=40.52 E-value=1.2e+02 Score=22.93 Aligned_cols=61 Identities=10% Similarity=0.092 Sum_probs=43.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 138 KR~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
.|..++.|--.+..++--.-...++.|...+..|..++.++..++..+......+-+.|-.
T Consensus 6 ~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD~ 66 (83)
T 2xdj_A 6 DRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDS 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554423333344455667888999999999999999999999998887777666643
No 147
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=40.33 E-value=94 Score=28.61 Aligned_cols=29 Identities=10% Similarity=-0.061 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 171 LESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 171 LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
+++.....+++++++.+||+.|+..+...
T Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (487)
T 3oja_A 433 AIRDWDMYQHKETQLAEENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhHHHHHHHHhhhhhhhhhhh
Confidence 33444556677778888888888776543
No 148
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=40.16 E-value=63 Score=27.34 Aligned_cols=15 Identities=13% Similarity=0.306 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHH
Q 024703 155 ERKKMYVKDLEMKSR 169 (264)
Q Consensus 155 qRKKeYVeeLE~KVk 169 (264)
++|++|+++|..+..
T Consensus 22 ~~K~~~LqeL~~Q~v 36 (155)
T 2aze_A 22 KQKQSQLQELILQQI 36 (155)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 567788877775543
No 149
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=40.01 E-value=41 Score=23.43 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024703 161 VKDLEMKSRYLESECRKLGRLL 182 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql 182 (264)
+.+|..|+..|..++.+|+.++
T Consensus 28 ~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 28 LAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666665555554
No 150
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=40.00 E-value=97 Score=21.87 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCV 185 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L 185 (264)
.+++|+.+...|+.++..|+..+..|
T Consensus 31 ~~~~L~~~N~~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 31 ECKELEKKNEALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 151
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=39.87 E-value=11 Score=26.58 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024703 157 KKMYVKDLEMKSRYLESECRKLG 179 (264)
Q Consensus 157 KKeYVeeLE~KVk~LE~EN~~L~ 179 (264)
++.|++.|+.++..||..+..|.
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC----
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Confidence 45799999999999987766654
No 152
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=39.77 E-value=87 Score=21.28 Aligned_cols=15 Identities=33% Similarity=0.605 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHH
Q 024703 158 KMYVKDLEMKSRYLE 172 (264)
Q Consensus 158 KeYVeeLE~KVk~LE 172 (264)
|.|+++||.+...|.
T Consensus 9 knyiqeleernaelk 23 (46)
T 3he4_B 9 KNYIQELEERNAELK 23 (46)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHH
Confidence 578888887765544
No 153
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=39.49 E-value=38 Score=21.00 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024703 171 LESECRKLGRLLHCVLAENQSLR 193 (264)
Q Consensus 171 LE~EN~~L~~ql~~L~~EN~~LR 193 (264)
|+-+|..|.+++..|......|+
T Consensus 5 lefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 5 LEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhc
Confidence 44555555555555444444443
No 154
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=38.63 E-value=1.5e+02 Score=25.30 Aligned_cols=32 Identities=22% Similarity=0.134 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLR 193 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LR 193 (264)
..+|..++.|...+..|...-..|..++..|.
T Consensus 44 ~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQ 75 (168)
T 3o0z_A 44 SQLESLNRELQERNRILENSKSQTDKDYYQLQ 75 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333333333333333
No 155
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=38.28 E-value=92 Score=23.82 Aligned_cols=25 Identities=32% Similarity=0.294 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 162 KDLEMKSRYLESECRKLGRLLHCVL 186 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L~~ql~~L~ 186 (264)
.+.|.+.+.|+..|.+|-.+++.|+
T Consensus 52 ~e~e~r~k~le~~n~~l~~riqELE 76 (83)
T 4ath_A 52 KDLENRQKKLEHANRHLLLRVQELE 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3345555555555555555555443
No 156
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=37.92 E-value=38 Score=26.10 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024703 161 VKDLEMKSRYLESECRKLGR 180 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ 180 (264)
|+.|+..+..|+.+|.+|+.
T Consensus 55 ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 55 IEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 157
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=37.84 E-value=42 Score=31.61 Aligned_cols=49 Identities=18% Similarity=0.125 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccC
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASLT 207 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~~~g~~t~ 207 (264)
+-.+.|-.+++.+..+...|..++..+..+...+-..|.+.....++.+
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vp~g 112 (421)
T 1ses_A 64 EEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWPGAPVG 112 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCSS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 4445566666666666777776666666666555555555444444443
No 158
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=37.44 E-value=99 Score=24.88 Aligned_cols=20 Identities=10% Similarity=0.049 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024703 178 LGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 178 L~~ql~~L~~EN~~LRqqLq 197 (264)
+......|..++..|..++.
T Consensus 88 l~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 88 LVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 44555556666666655543
No 159
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=37.42 E-value=1.2e+02 Score=25.43 Aligned_cols=27 Identities=7% Similarity=-0.002 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCV 185 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L 185 (264)
.-..+|+.++..++.++++|.-+.+.+
T Consensus 29 ~l~~~l~~~i~q~d~elqQLefq~kr~ 55 (150)
T 4dci_A 29 EAEREISNGIANADQQLAQLEQEGQTV 55 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444333333
No 160
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=36.66 E-value=85 Score=24.33 Aligned_cols=31 Identities=13% Similarity=0.251 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSL 192 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L~~ql~~L~~EN~~L 192 (264)
+.|+..++.++.....++.++..+..+.+.+
T Consensus 98 ~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~ 128 (133)
T 1fxk_C 98 NELESTLQKMGENLRAITDIMMKLSPQAEEL 128 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555444443
No 161
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=36.06 E-value=35 Score=24.24 Aligned_cols=21 Identities=14% Similarity=0.165 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024703 158 KMYVKDLEMKSRYLESECRKL 178 (264)
Q Consensus 158 KeYVeeLE~KVk~LE~EN~~L 178 (264)
+.|+..||.++..||.....|
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l 64 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLI 64 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 458999999998888777665
No 162
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=35.71 E-value=1.1e+02 Score=21.26 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024703 176 RKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 176 ~~L~~ql~~L~~EN~~LRqqL 196 (264)
..|+..+..|..+|..|+..+
T Consensus 25 ~~Le~~v~~L~~~n~~L~~~v 45 (62)
T 1jnm_A 25 ARLEEKVKTLKAQNSELASTA 45 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555554444
No 163
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=35.20 E-value=1.5e+02 Score=22.79 Aligned_cols=47 Identities=17% Similarity=0.159 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 152 RSRERKKMYVKDLEM----KSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 152 rSRqRKKeYVeeLE~----KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
+-|-+-+-|-..=-. +...||.++..|+.++..|..||..++..+..
T Consensus 30 RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~ 80 (90)
T 2wt7_B 30 RRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDA 80 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667664433 34679999999999999999999999877643
No 164
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=34.76 E-value=99 Score=26.69 Aligned_cols=31 Identities=6% Similarity=-0.150 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAEN 189 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN 189 (264)
+++.-+=.++..|+.+|.+|++..+.|..|-
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~E~ 175 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLRDW 175 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443
No 165
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=34.21 E-value=1.5e+02 Score=22.41 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHCVLA 187 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~L~~ 187 (264)
+..+|.+...++.++..|+++++.+..
T Consensus 32 ~k~~e~~~~~~E~ei~sL~kKiq~lE~ 58 (101)
T 3u59_A 32 KKQAEDRCKQLEEEQQGLQKKLKGTED 58 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444333
No 166
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=34.03 E-value=1.9e+02 Score=25.67 Aligned_cols=54 Identities=17% Similarity=0.046 Sum_probs=40.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 139 KRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 139 R~rRllRNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
..|+-+..|-.+-+ +.+..|+.++++.+.|++.+..++.+++..-+.+|.+--+
T Consensus 164 ~Ik~yLa~R~~~lK------~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~ 217 (228)
T 3q0x_A 164 VVKQFLAFRLSEVK------GTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDK 217 (228)
T ss_dssp HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444433 3567899999999999999999999999998999887544
No 167
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=33.99 E-value=76 Score=30.92 Aligned_cols=49 Identities=12% Similarity=-0.074 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCcc
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASLTKQ 209 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~~~g~~t~~q 209 (264)
.+.|-.+++.|..++..|..++..+..+...+-..|.+.....++.+..
T Consensus 73 ~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~~~vP~g~~ 121 (485)
T 3qne_A 73 AKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIVHESVVDSQD 121 (485)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCC
Confidence 3455556666666666666666666666555544444443344444433
No 168
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=33.50 E-value=89 Score=20.74 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 170 YLESECRKLGRLLHCVLAENQSLR 193 (264)
Q Consensus 170 ~LE~EN~~L~~ql~~L~~EN~~LR 193 (264)
.|..++.+-..++..|..||..|+
T Consensus 11 kLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 11 KLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344444444556666666666664
No 169
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=33.19 E-value=33 Score=24.90 Aligned_cols=19 Identities=21% Similarity=0.144 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024703 158 KMYVKDLEMKSRYLESECR 176 (264)
Q Consensus 158 KeYVeeLE~KVk~LE~EN~ 176 (264)
+.|+..||.++..||..+.
T Consensus 47 ~~~~~~Le~rl~~le~~l~ 65 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLK 65 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3588888888877765443
No 170
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=33.12 E-value=74 Score=28.87 Aligned_cols=35 Identities=20% Similarity=0.204 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 158 KMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSL 192 (264)
Q Consensus 158 KeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~L 192 (264)
.+.++.|+.+.+.|+.|+.+|++....+...|..-
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~~r 218 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANKANAER 218 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 34677777777777777777776666655544433
No 171
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=33.07 E-value=71 Score=26.28 Aligned_cols=32 Identities=16% Similarity=-0.131 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSL 192 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~L 192 (264)
+..||.++..++.++..+..+++.+..+.+.|
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (192)
T 2gkw_A 2 TGLLESQLSRHDQMLSVHDIRLADMDLRFQVL 33 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666666666666665555554443333
No 172
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=33.05 E-value=1.5e+02 Score=22.37 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 024703 157 KKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (264)
Q Consensus 157 KKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~ 200 (264)
|...+..|+..++---+-..+|.-.+-.+--||.-|+++|+...
T Consensus 30 Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 30 KEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 33456666655544444445677777788889999999987653
No 173
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.22 E-value=92 Score=29.50 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
.++++|.+++..++..++|+.+...|..+...++..+...
T Consensus 26 ~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l 65 (405)
T 4b4t_J 26 KIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLL 65 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555555555555555555555555443
No 174
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=32.07 E-value=1.3e+02 Score=28.15 Aligned_cols=43 Identities=23% Similarity=0.122 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 154 RERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 154 RqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
....++++++++.+++.++++..+.+..-..|-++.+.||..+
T Consensus 19 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnI 61 (403)
T 4etp_A 19 IAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNI 61 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 3445567777888887777777766666667777777777554
No 175
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=31.89 E-value=73 Score=25.11 Aligned_cols=27 Identities=15% Similarity=0.032 Sum_probs=13.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 024703 142 RQLRNRDAAVRSRERKKMYVKDLEMKS 168 (264)
Q Consensus 142 RllRNReSAqrSRqRKKeYVeeLE~KV 168 (264)
|....-.+.++-|.+=..++..|..-|
T Consensus 27 kr~~Hn~~ERrRR~~In~~~~~L~~lv 53 (118)
T 4ati_A 27 KKDNHNLIERRRRFNINDRIKELGTLI 53 (118)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555666567777776643
No 176
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=31.64 E-value=1.1e+02 Score=22.70 Aligned_cols=22 Identities=41% Similarity=0.594 Sum_probs=14.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH
Q 024703 144 LRNRDAAVRSRERKKMYVKDLE 165 (264)
Q Consensus 144 lRNReSAqrSRqRKKeYVeeLE 165 (264)
.+|+..|..+=+|||.|=..|+
T Consensus 41 ~knK~~Al~aLkrKK~~E~qL~ 62 (79)
T 4abm_A 41 TKNKRAALQALKRKKRYEKQLA 62 (79)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHhHHHHHHH
Confidence 4567777777777776644443
No 177
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=30.99 E-value=1.4e+02 Score=20.92 Aligned_cols=30 Identities=3% Similarity=0.048 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQ 190 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~L~~EN~ 190 (264)
|..|..+|..|..+..+|+..+..+..+.+
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666555555555554444
No 178
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=30.52 E-value=95 Score=25.01 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 156 RKKMYVKDLEMKSRYLESECRKLGRLL 182 (264)
Q Consensus 156 RKKeYVeeLE~KVk~LE~EN~~L~~ql 182 (264)
+.++....++.+++.|..+..+|++++
T Consensus 135 ~~~~~~~~l~~~i~~L~~~l~~le~~~ 161 (166)
T 3pjs_K 135 SEKAAEEAYTRTTRALHERFDRLERML 161 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555443
No 179
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=30.11 E-value=2e+02 Score=22.62 Aligned_cols=59 Identities=19% Similarity=0.120 Sum_probs=37.3
Q ss_pred HHhHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 024703 144 LRNRDAAVRSRERKKMYVK--------------DLEMKSRYLESEC-------RKLGRLLHCVLAENQSLRFSLQKGNAY 202 (264)
Q Consensus 144 lRNReSAqrSRqRKKeYVe--------------eLE~KVk~LE~EN-------~~L~~ql~~L~~EN~~LRqqLq~~~~~ 202 (264)
.++|-..+.-|+.|+.|+. +|..+++.|...+ -.|..++..-.-|...|+.++..++..
T Consensus 13 e~~~~k~q~e~EeKkkiLaER~~pL~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dlgKf 92 (107)
T 1ytz_T 13 DQKRGKKQTARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQAQKH 92 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HhcccHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHhcCc
Confidence 3344455556666777776 4555555555444 345566666677889999998777443
No 180
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=30.00 E-value=1.5e+02 Score=28.87 Aligned_cols=43 Identities=14% Similarity=0.148 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccc
Q 024703 168 SRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASLTKQE 210 (264)
Q Consensus 168 Vk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~~~g~~t~~qe 210 (264)
++.+..+...|..++..+..+...+-..|.+.....++.+..+
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~~~vP~g~~e 155 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKLMLNVGNILHESVPIAQDE 155 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCCCSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCc
Confidence 5555566666666666665555554444444433344444333
No 181
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=29.85 E-value=1.5e+02 Score=22.66 Aligned_cols=38 Identities=21% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
+..|+..++.++.+=.+|...+..|..+...|...|..
T Consensus 6 ~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~ 43 (96)
T 3q8t_A 6 SEQLQRELKELALEEERLIQELEDVEKNRKVVAENLEK 43 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
No 182
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=29.70 E-value=74 Score=27.46 Aligned_cols=30 Identities=20% Similarity=0.133 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAE 188 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L~~ql~~L~~E 188 (264)
..+.+|..++.+|+++|.+|+.....+..+
T Consensus 152 d~~~~L~~~n~~LqkeNeRL~~E~n~~l~q 181 (184)
T 3w03_C 152 DTIAENQAKNEHLQKENERLLRDWNDVQGR 181 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888877766544
No 183
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=29.52 E-value=80 Score=24.79 Aligned_cols=13 Identities=15% Similarity=0.169 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 024703 177 KLGRLLHCVLAEN 189 (264)
Q Consensus 177 ~L~~ql~~L~~EN 189 (264)
.|+.+++.|+.|.
T Consensus 100 ~L~~~i~~Le~el 112 (117)
T 3kin_B 100 ALKSVIQHLEVEL 112 (117)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 184
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=29.46 E-value=1.7e+02 Score=21.55 Aligned_cols=22 Identities=18% Similarity=0.172 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024703 161 VKDLEMKSRYLESECRKLGRLL 182 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql 182 (264)
++.|+.++..|+.+...|+.++
T Consensus 24 le~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777766555
No 185
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=29.46 E-value=1.2e+02 Score=24.30 Aligned_cols=35 Identities=9% Similarity=-0.015 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 164 LEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 164 LE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
-..+++.|+.||....+++.....|...|..++..
T Consensus 90 Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~ 124 (132)
T 1ykh_B 90 QLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDS 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577888888888888888888887777777653
No 186
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=28.79 E-value=1.9e+02 Score=21.98 Aligned_cols=38 Identities=18% Similarity=0.144 Sum_probs=20.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 145 RNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLL 182 (264)
Q Consensus 145 RNReSAqrSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql 182 (264)
.....+...+.++-.-|..|..|++.++.+...++.++
T Consensus 30 ~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L 67 (101)
T 3u1c_A 30 ADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEEL 67 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555666666666666666554444333
No 187
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=28.77 E-value=1.4e+02 Score=25.63 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 152 RSRERKKMYVKDLEMKSRYLESECRKLGRLLHC 184 (264)
Q Consensus 152 rSRqRKKeYVeeLE~KVk~LE~EN~~L~~ql~~ 184 (264)
++-.+.+.-+..||.++.....++..+++.+.+
T Consensus 135 rtV~kLqkeiD~LEDeL~~eKek~k~i~~eLDq 167 (175)
T 3mud_A 135 DTTAKNEKSIDDLEEKVAHAKEENLNMHQMLDQ 167 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555555444444444444443
No 188
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=28.67 E-value=2.6e+02 Score=23.50 Aligned_cols=38 Identities=18% Similarity=0.157 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
.+.+|+..++.-...+..|+-.+..|..++..+..++.
T Consensus 83 ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~ 120 (152)
T 3a7p_A 83 EIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLS 120 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444433333333333444444444444444444433
No 189
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=28.56 E-value=1.8e+02 Score=26.82 Aligned_cols=40 Identities=15% Similarity=0.041 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
-+..||..+...+.+++.|+.++..+....+.|++++...
T Consensus 13 ~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 13 EVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666666666666666666666666655433
No 190
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=28.26 E-value=1.7e+02 Score=21.10 Aligned_cols=14 Identities=7% Similarity=0.181 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 024703 183 HCVLAENQSLRFSL 196 (264)
Q Consensus 183 ~~L~~EN~~LRqqL 196 (264)
..|+.+++.|+.++
T Consensus 60 ~~L~~~~~~L~~e~ 73 (80)
T 1hlo_A 60 QYMRRKNHTHQQDI 73 (80)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 191
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.07 E-value=1.3e+02 Score=28.38 Aligned_cols=39 Identities=13% Similarity=0.044 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
++.||.....|+.++..++.++..+..|...++.++...
T Consensus 51 lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l 89 (428)
T 4b4t_K 51 LKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRI 89 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666666666666665443
No 192
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=27.82 E-value=1.3e+02 Score=24.81 Aligned_cols=35 Identities=9% Similarity=0.004 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 163 DLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 163 eLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
+-..+++.|+.||....+++.....|...|..++.
T Consensus 89 eQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~ 123 (151)
T 1yke_B 89 EQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVD 123 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557888888888888888877777777766654
No 193
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=27.69 E-value=3.7e+02 Score=26.52 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 151 VRSRERKKMYVKDLEMKSRYLESECRKLG 179 (264)
Q Consensus 151 qrSRqRKKeYVeeLE~KVk~LE~EN~~L~ 179 (264)
+.-+++.++.-+.+|.+-+.++....+|.
T Consensus 504 ~~l~~~~~~~~~~~~~~~~~~~e~~~ql~ 532 (592)
T 1f5n_A 504 KMLHEMQRKNEQMMEQKERSYQEHLKQLT 532 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 194
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=27.53 E-value=29 Score=22.11 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHCV 185 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~L 185 (264)
+..||+|+..|++.+....+++..|
T Consensus 2 iaaleqkiaaleqkcaaceqkiaal 26 (32)
T 4g1a_A 2 IAALEQKIAALEQKCAACEQKIAAL 26 (32)
T ss_dssp CHHHHHHHHHHHHHTSSHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777777777776666666554
No 195
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=27.21 E-value=1.7e+02 Score=20.74 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 170 YLESECRKLGRLLHCVLAENQSLR 193 (264)
Q Consensus 170 ~LE~EN~~L~~ql~~L~~EN~~LR 193 (264)
..+.++.+|+..++.|..|...||
T Consensus 53 ~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 53 QAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345556666666666666666655
No 196
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=26.89 E-value=2.1e+02 Score=22.77 Aligned_cols=40 Identities=8% Similarity=0.003 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHh
Q 024703 159 MYVKDLEMKSRYLESECRKL-------GRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN~~L-------~~ql~~L~~EN~~LRqqLq~ 198 (264)
.-++++|..+.++.+++... +.....|..+...||.+|..
T Consensus 37 D~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 37 DMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666655555443 44444555666666666644
No 197
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=26.81 E-value=2e+02 Score=21.94 Aligned_cols=33 Identities=21% Similarity=0.157 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 166 MKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 166 ~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
.|++.-..++..|++++..-.+|...|..+|..
T Consensus 47 kKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~~ 79 (81)
T 3qh9_A 47 WKLKATKAEVAQLQEQVALKDAEIERLHSQLSR 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 344444467788889988888899988888753
No 198
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.75 E-value=71 Score=30.24 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRF 194 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRq 194 (264)
.++-|+.+...++.+...+++++..++.|...|++
T Consensus 57 ~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 57 EYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQS 91 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34455666667777888888888888888877765
No 199
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=26.72 E-value=21 Score=33.14 Aligned_cols=33 Identities=15% Similarity=0.039 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLRF 194 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRq 194 (264)
..||.++..++.+...|+..+..+.++.+.|++
T Consensus 7 ~~lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~ 39 (319)
T 1fzc_C 7 MKYEASILTHDSSIRYLQEIYNSNNQKIVNLKE 39 (319)
T ss_dssp ---CTTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443
No 200
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=26.69 E-value=77 Score=22.15 Aligned_cols=18 Identities=22% Similarity=0.006 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024703 166 MKSRYLESECRKLGRLLH 183 (264)
Q Consensus 166 ~KVk~LE~EN~~L~~ql~ 183 (264)
.++..++.+..+++..+.
T Consensus 7 ~~i~~le~el~~~r~e~~ 24 (59)
T 1gk6_A 7 DKVEELLSKNYHLENEVA 24 (59)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444443333
No 201
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=26.67 E-value=1.6e+02 Score=20.48 Aligned_cols=25 Identities=12% Similarity=0.057 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 174 ECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 174 EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
.+..|+.++..|..+|..|+..+..
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~ 48 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIAN 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666543
No 202
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=26.47 E-value=1.6e+02 Score=20.27 Aligned_cols=35 Identities=17% Similarity=0.098 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 163 DLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 163 eLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
.-|..|..|+.++.+|...+.+-...+..+++.|-
T Consensus 9 fAERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD 43 (52)
T 2z5i_A 9 HLENEVARLKKLVDDLEDELYAQKLKYKAISEELD 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34556666666666666666666666666666654
No 203
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=26.37 E-value=1.2e+02 Score=20.77 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024703 179 GRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 179 ~~ql~~L~~EN~~LRqqLq 197 (264)
...++.|......|+..|+
T Consensus 26 eselqalekklaalksklq 44 (48)
T 1g6u_A 26 ESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444443
No 204
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=25.76 E-value=63 Score=25.05 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q 024703 176 RKLGRLLHCVLAENQSLRFSLQKGN 200 (264)
Q Consensus 176 ~~L~~ql~~L~~EN~~LRqqLq~~~ 200 (264)
.+|+.++..+..+...||..+...+
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666666666665544
No 205
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=25.14 E-value=1.2e+02 Score=22.28 Aligned_cols=33 Identities=24% Similarity=0.159 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 024703 168 SRYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (264)
Q Consensus 168 Vk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~~ 200 (264)
++.-.....+|+..+..-..|++.||.+|.+..
T Consensus 20 i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~q 52 (67)
T 1zxa_A 20 LMLKEERIKELEKRLSEKEEEIQELKRKLHKCQ 52 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455666666666777777777776554
No 206
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=25.09 E-value=1.1e+02 Score=24.29 Aligned_cols=37 Identities=5% Similarity=-0.006 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
..-|+.+...++++..+|+..+..|......+++.+.
T Consensus 97 ~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~ 133 (148)
T 3gpv_A 97 LKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEIS 133 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666655555555543
No 207
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=24.45 E-value=82 Score=24.04 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024703 161 VKDLEMKSRYLESECRKLGR 180 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ 180 (264)
+..|+.+++.|+.++.+|+.
T Consensus 6 l~~l~~~~~~l~~~l~~l~~ 25 (149)
T 1rtm_1 6 LANMEAEINTLKSKLELTNK 25 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 45555555555555554443
No 208
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=24.22 E-value=1.4e+02 Score=26.40 Aligned_cols=33 Identities=21% Similarity=0.206 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 163 DLEMKSRYLESECRKLGRLLHCVLAENQSLRFS 195 (264)
Q Consensus 163 eLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqq 195 (264)
+++..+..+..+...|..++..|..+...|+++
T Consensus 96 ~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 96 EAEAVLRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 334444444444444444444444444444444
No 209
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=24.03 E-value=2.6e+02 Score=26.76 Aligned_cols=38 Identities=13% Similarity=0.023 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
..+|.-+...+.++..|+..+.......+.|++.+...
T Consensus 94 ~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l 131 (411)
T 3ghg_C 94 MKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQL 131 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555545555555555443
No 210
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=23.77 E-value=2.1e+02 Score=30.15 Aligned_cols=9 Identities=22% Similarity=1.018 Sum_probs=4.2
Q ss_pred hhhhhcChh
Q 024703 6 FLEDEFDWN 14 (264)
Q Consensus 6 ~~~~~~~w~ 14 (264)
...+.|+|.
T Consensus 504 y~~Egi~~~ 512 (1184)
T 1i84_S 504 YQREGIEWN 512 (1184)
T ss_dssp HHHHTCSCC
T ss_pred HHhcCCCcc
Confidence 334455554
No 211
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=23.23 E-value=1.1e+02 Score=20.65 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 162 KDLEMKSRYLESECRKLGRLLHCVL 186 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L~~ql~~L~ 186 (264)
.+|-.+-..||..+..|..++..|.
T Consensus 12 sel~~r~e~LE~Ri~~LE~KLd~L~ 36 (43)
T 2pnv_A 12 SDLNERSEDFEKRIVTLETKLETLI 36 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 212
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=22.85 E-value=1.3e+02 Score=24.04 Aligned_cols=37 Identities=11% Similarity=0.125 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq 197 (264)
++.|+..++.++.....++.++..+....+.+-++++
T Consensus 107 i~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~~ 143 (151)
T 2zdi_C 107 LKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQS 143 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777777777777766666655555443
No 213
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=22.76 E-value=1e+02 Score=23.62 Aligned_cols=19 Identities=32% Similarity=0.254 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLESECRKL 178 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L 178 (264)
.+..|+.+..+|++++.++
T Consensus 9 ~i~~L~~q~~~L~~ei~~~ 27 (85)
T 3viq_B 9 RVHLLEQQKEQLESSLQDA 27 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544444
No 214
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=22.72 E-value=1.2e+02 Score=20.81 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024703 161 VKDLEMKSRYLESECRKLGRLLH 183 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~~ql~ 183 (264)
+..||..++.|+.....|+.+++
T Consensus 22 laaleselqalekklaalksklq 44 (48)
T 1g6u_A 22 LAALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 215
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=22.54 E-value=1.6e+02 Score=18.80 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024703 178 LGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 178 L~~ql~~L~~EN~~LRqqL 196 (264)
|+++++.|.+.|-.-+|.+
T Consensus 6 lkkrvqalkarnyaakqkv 24 (33)
T 1fmh_B 6 LKKRVQALKARNYAAKQKV 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH
Confidence 3334444444444333333
No 216
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=22.31 E-value=99 Score=20.64 Aligned_cols=17 Identities=29% Similarity=0.136 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESEC 175 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN 175 (264)
+.|..|+.++..|..+-
T Consensus 15 eQi~~l~~kl~~LkeEK 31 (38)
T 2l5g_A 15 EQILKLEEKLLALQEEK 31 (38)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444443333
No 217
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=22.19 E-value=2.6e+02 Score=21.09 Aligned_cols=29 Identities=21% Similarity=0.107 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 150 AVRSRERKKMYVKDLEMKSRYLESECRKL 178 (264)
Q Consensus 150 AqrSRqRKKeYVeeLE~KVk~LE~EN~~L 178 (264)
|...+.++-.-|..|..|++.++.+...+
T Consensus 35 ~e~~~~~~E~ei~sL~kKiq~lE~eld~~ 63 (101)
T 3u59_A 35 AEDRCKQLEEEQQGLQKKLKGTEDEVEKY 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455556666666555554433
No 218
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=22.14 E-value=2.7e+02 Score=26.77 Aligned_cols=38 Identities=16% Similarity=0.206 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 024703 159 MYVKDLEMKSRYLESEC-------RKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN-------~~L~~ql~~L~~EN~~LRqqL 196 (264)
+|.++||.++..|+..+ +.|+..|..+..+.++|-.-+
T Consensus 113 e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 113 QINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888888776643 334444455555555554333
No 219
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=22.10 E-value=2.1e+02 Score=25.35 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 167 KSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 167 KVk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
+...+..++..|...++..++|+..++.+|
T Consensus 172 R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~ 201 (228)
T 3q0x_A 172 RLSEVKGTCHDLSDDLSRTRDDRDSMVAQL 201 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444
No 220
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=22.07 E-value=5.4e+02 Score=24.86 Aligned_cols=32 Identities=13% Similarity=0.181 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 167 KSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 167 KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
....|..+...|..++..+.++...+..+|..
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~ 148 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777888888888777777766643
No 221
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=22.02 E-value=2.4e+02 Score=22.60 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 162 KDLEMKSRYLESECRKLGRLLHCVL 186 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L~~ql~~L~ 186 (264)
..|+.+++.|+..|..|+.++..+.
T Consensus 53 ~eL~~~~~~Le~~n~~L~~~lke~~ 77 (155)
T 2oto_A 53 EELEKAKQALEDQRKDLETKLKELQ 77 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556555555555444443
No 222
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=21.87 E-value=2e+02 Score=19.76 Aligned_cols=20 Identities=15% Similarity=0.096 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024703 177 KLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 177 ~L~~ql~~L~~EN~~LRqqL 196 (264)
.|+.++..|..+|..|+..+
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i 45 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEV 45 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 223
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=21.86 E-value=2.9e+02 Score=33.19 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024703 158 KMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 158 KeYVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
++.+...+.+++.++.+..+|+.+.+....|-+.|+.++..
T Consensus 2027 ~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~ 2067 (3245)
T 3vkg_A 2027 KLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSK 2067 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555556666666666666666666666543
No 224
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=21.82 E-value=1.9e+02 Score=25.28 Aligned_cols=15 Identities=20% Similarity=0.372 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 024703 161 VKDLEMKSRYLESEC 175 (264)
Q Consensus 161 VeeLE~KVk~LE~EN 175 (264)
++.|..++..++.+.
T Consensus 43 i~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 43 IKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 333333333333333
No 225
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=21.73 E-value=1.2e+02 Score=23.35 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024703 161 VKDLEMKSRYLESECRKLG 179 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~ 179 (264)
++.++..+..|+.+|.+|+
T Consensus 47 ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 47 IEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 226
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=21.72 E-value=2.2e+02 Score=21.09 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024703 165 EMKSRYLESECRKLGRLLHCVL 186 (264)
Q Consensus 165 E~KVk~LE~EN~~L~~ql~~L~ 186 (264)
+..++.|+.+...++.++..+.
T Consensus 83 e~~i~~le~~~~~l~~~l~~lk 104 (117)
T 2zqm_A 83 EVRLNALERQEKKLNEKLKELT 104 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 227
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=21.71 E-value=1.1e+02 Score=23.37 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 164 LEMKSRYLESECRKLGRLLHCVLA 187 (264)
Q Consensus 164 LE~KVk~LE~EN~~L~~ql~~L~~ 187 (264)
|.+++..|+.+.++|+.++..+..
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~ 25 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNK 25 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666666666666666655543
No 228
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=21.69 E-value=30 Score=22.49 Aligned_cols=28 Identities=14% Similarity=0.108 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCVLA 187 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L~~ 187 (264)
.++.+..|++.|+.++..++.++.++..
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~~~~~~ 32 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEVARLKK 32 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777666666665543
No 229
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=21.18 E-value=2.3e+02 Score=20.13 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 024703 176 RKLGRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 176 ~~L~~ql~~L~~EN~~LRqqLq~ 198 (264)
.+|-+|+.+|..||..||+.|..
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~d 28 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELED 28 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHh
Confidence 46777778888888888877753
No 230
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=20.85 E-value=4e+02 Score=22.89 Aligned_cols=30 Identities=17% Similarity=0.086 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 163 DLEMKSRYLESECRKLGRLLHCVLAENQSL 192 (264)
Q Consensus 163 eLE~KVk~LE~EN~~L~~ql~~L~~EN~~L 192 (264)
.|+..+..|...+..|+.++..|...|-.|
T Consensus 92 ~Lq~el~~l~~~~~~l~~~ireLEq~NDdl 121 (189)
T 2v71_A 92 VLEDDLSQTRAIKEQLHKYVRELEQANDDL 121 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 333344444444444444444444444433
No 231
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=20.78 E-value=2.9e+02 Score=21.81 Aligned_cols=20 Identities=15% Similarity=0.089 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 024703 179 GRLLHCVLAENQSLRFSLQK 198 (264)
Q Consensus 179 ~~ql~~L~~EN~~LRqqLq~ 198 (264)
+.+++.|+.|...|.+.|+.
T Consensus 66 q~~v~elqgEI~~Lnq~Lqd 85 (99)
T 3ni0_A 66 QARIKELENEVTKLNQELEN 85 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566666777777776654
No 232
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=20.71 E-value=2e+02 Score=19.32 Aligned_cols=13 Identities=23% Similarity=0.217 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLE 172 (264)
Q Consensus 160 YVeeLE~KVk~LE 172 (264)
++.+++.++....
T Consensus 13 ~~~~~~~~~~~~~ 25 (60)
T 3htk_A 13 QVEELTEKCSLKT 25 (60)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 233
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=20.70 E-value=1.9e+02 Score=24.60 Aligned_cols=41 Identities=10% Similarity=-0.020 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHhc
Q 024703 159 MYVKDLEMKSRYLESEC----------RKLGRLLHCVLAENQSLRFSLQKG 199 (264)
Q Consensus 159 eYVeeLE~KVk~LE~EN----------~~L~~ql~~L~~EN~~LRqqLq~~ 199 (264)
..+..|+.|+.+.+.+. .+++..++++..|-..+|+.+.+.
T Consensus 76 ~~~d~lekKl~~aq~kL~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~kA 126 (158)
T 3tul_A 76 SVYDAATKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDKA 126 (158)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666655543 345666777777777777777654
No 234
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=20.53 E-value=2.3e+02 Score=23.66 Aligned_cols=37 Identities=8% Similarity=0.077 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
..+-|+.+.+.++++..+|+..+..|..-...++...
T Consensus 80 ~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~~ 116 (278)
T 1r8e_A 80 LFAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQM 116 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455677777777777777777776666555555443
No 235
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=20.51 E-value=1.8e+02 Score=22.42 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024703 162 KDLEMKSRYLESECRKL 178 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L 178 (264)
+.++.+++.+..+..+|
T Consensus 114 ~~l~~~~~~l~~~l~~l 130 (139)
T 3eff_K 114 EAYTRTTRALHERFDRL 130 (139)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444433333333
No 236
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=20.46 E-value=1.9e+02 Score=22.99 Aligned_cols=35 Identities=11% Similarity=-0.016 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (264)
Q Consensus 162 eeLE~KVk~LE~EN~~L~~ql~~L~~EN~~LRqqL 196 (264)
+-|+.|++.++.....|...+..+......+...|
T Consensus 101 ~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l 135 (151)
T 2zdi_C 101 SFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKA 135 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555544444444443
No 237
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=20.31 E-value=2.9e+02 Score=21.10 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=21.1
Q ss_pred HHHHhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 142 RQLRNRDAAVRSRERKKM--YVKDLEMKSRYLESECRKLGRLLHCV 185 (264)
Q Consensus 142 RllRNReSAqrSRqRKKe--YVeeLE~KVk~LE~EN~~L~~ql~~L 185 (264)
+-.|.++.++....|++. -|..-..+++.|+.++.+.+..|..|
T Consensus 32 ~YfrqkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 32 RYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666666666666552 23333333444444444444444443
No 238
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=20.30 E-value=1.4e+02 Score=23.83 Aligned_cols=30 Identities=17% Similarity=0.212 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 160 YVKDLEMKSRYLESECRKLGRLLHCVLAEN 189 (264)
Q Consensus 160 YVeeLE~KVk~LE~EN~~L~~ql~~L~~EN 189 (264)
-|.+|+.++..++..+++|++....-..|-
T Consensus 5 e~~~l~~qi~~~ekr~~RLKevF~~ks~eF 34 (123)
T 4dzo_A 5 EVAELKKQVESAELKNQRLKEVFQTKIQEF 34 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888888888888888776554443
No 239
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=20.24 E-value=4.1e+02 Score=22.74 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024703 158 KMYVKDLEMKSRYLESECRKLGRLL 182 (264)
Q Consensus 158 KeYVeeLE~KVk~LE~EN~~L~~ql 182 (264)
|.||.-|+.+...+++.+.+..+++
T Consensus 77 ~~yI~llrErea~lEqkVaeq~e~V 101 (169)
T 3k29_A 77 KAYIKVVAIQLSEEEEKVNKQKENV 101 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666667777777777665554444
No 240
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=20.10 E-value=1e+02 Score=22.29 Aligned_cols=43 Identities=26% Similarity=0.316 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCCC
Q 024703 161 VKDLEMKSRYLESECRKLG--RLLHCVLAENQSLRFSLQKGNAYG 203 (264)
Q Consensus 161 VeeLE~KVk~LE~EN~~L~--~ql~~L~~EN~~LRqqLq~~~~~g 203 (264)
+..||.+++.|+.....|- -++..|...-..|+..+...++.|
T Consensus 4 vkaleekvkaleekvkalggggrieelkkkweelkkkieelgggg 48 (67)
T 1lq7_A 4 VKALEEKVKALEEKVKALGGGGRIEELKKKWEELKKKIEELGGGG 48 (67)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHHTTSSS
T ss_pred hHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHhCCCc
Confidence 4567777777776665542 244445555556666666655544
Done!