BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024705
(264 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HR8|A Chain A, Crystal Structure Of Thermotoga Maritima Reca
Length = 356
Score = 175 bits (444), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 89/194 (45%), Positives = 128/194 (65%)
Query: 65 QKDNALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVE 124
QK + L AL ++ +FGK S++ L + VI TGSL +D+A G+GG P+GRIVE
Sbjct: 6 QKKSVLEKALKRIEENFGKGSIMILGDETQVQPVEVIPTGSLAIDIATGVGGYPRGRIVE 65
Query: 125 IYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAE 184
I+G+E+SGKTTLALH I EAQK+GG A++D E+ALDP A+ +G+D ++LLI+QPD E
Sbjct: 66 IFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGE 125
Query: 185 NLLSVVDTLTKSGXXXXXXXXXXXXLIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLC 244
L +VD L +SG L+P+ EI + M Q+R+M+QALRKI S+
Sbjct: 126 QALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVN 185
Query: 245 QSHTLIIFLNQVKV 258
+S ++IF NQ+++
Sbjct: 186 KSKAVVIFTNQIRM 199
>pdb|1UBC|A Chain A, Structure Of Reca Protein
pdb|1UBE|A Chain A, Msreca-Adp Complex
pdb|1UBF|A Chain A, Msreca-Atpgs Complex
pdb|1UBG|A Chain A, Msreca-Datp Complex
pdb|2G88|A Chain A, Msreca-datp Complex
pdb|2ODN|A Chain A, Msreca-Datp Complex
pdb|2ODW|A Chain A, Msreca-Atp-Gama-S Complex
pdb|2OE2|A Chain A, Msreca-Native-Low Humidity 95%
pdb|2OEP|A Chain A, Msreca-adp-complex
pdb|2OES|A Chain A, Msreca-Native-Ssb
pdb|2OFO|A Chain A, Msreca-native
pdb|2ZR7|A Chain A, Msreca Native Form Ii'
pdb|2ZRM|A Chain A, Msreca Datp Form Iv
pdb|2ZRN|A Chain A, Msreca Form Iv
pdb|2ZRO|A Chain A, Msreca Adp Form Iv
pdb|2ZRP|A Chain A, Msreca Datp Form Ii'
Length = 349
Score = 171 bits (433), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 86/194 (44%), Positives = 127/194 (65%), Gaps = 5/194 (2%)
Query: 66 KDNALRLALSQLANDFGKESMLSLKRFFGSRRGP--VISTGSLKLDLALGIGGLPKGRIV 123
++ AL LA++Q+ +FGK S++ L R P VI TGS+ LD+ALGIGGLP+GR++
Sbjct: 8 REKALELAMAQIDKNFGKGSVMRLGE---EVRQPISVIPTGSISLDVALGIGGLPRGRVI 64
Query: 124 EIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSA 183
EIYG E+SGKTT+ALH + AQ GG A++D E+ALDP A+ +G+D ++LL++QPD+
Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124
Query: 184 ENLLSVVDTLTKSGXXXXXXXXXXXXLIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSL 243
E L + D L +SG L+P+ EI + + Q+R+M+QALRK+ +L
Sbjct: 125 EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184
Query: 244 CQSHTLIIFLNQVK 257
S T IF+NQ++
Sbjct: 185 NNSGTTAIFINQLR 198
>pdb|2ZR0|A Chain A, Msreca-Q196e Mutant
pdb|2ZR9|A Chain A, Msreca Q196e Datp Form Iv
pdb|2ZRA|A Chain A, Msreca Q196e Atpgs
pdb|2ZRB|A Chain A, Msreca Q196e Form Ii'
Length = 349
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 85/194 (43%), Positives = 127/194 (65%), Gaps = 5/194 (2%)
Query: 66 KDNALRLALSQLANDFGKESMLSLKRFFGSRRGP--VISTGSLKLDLALGIGGLPKGRIV 123
++ AL LA++Q+ +FGK S++ L R P VI TGS+ LD+ALGIGGLP+GR++
Sbjct: 8 REKALELAMAQIDKNFGKGSVMRLGE---EVRQPISVIPTGSISLDVALGIGGLPRGRVI 64
Query: 124 EIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSA 183
EIYG E+SGKTT+ALH + AQ GG A++D E+ALDP A+ +G+D ++LL++QPD+
Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124
Query: 184 ENLLSVVDTLTKSGXXXXXXXXXXXXLIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSL 243
E L + D L +SG L+P+ EI + + Q+R+M+QALRK+ +L
Sbjct: 125 EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184
Query: 244 CQSHTLIIFLNQVK 257
S T IF+N+++
Sbjct: 185 NNSGTTAIFINELR 198
>pdb|3CMU|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
Length = 2050
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/196 (47%), Positives = 122/196 (62%), Gaps = 7/196 (3%)
Query: 66 KDNALRLALSQLANDFGKESMLSLKRFFGSRRG---PVISTGSLKLDLALGIGGLPKGRI 122
K AL AL Q+ FGK S++ L G R ISTGSL LD+ALG GGLP GRI
Sbjct: 330 KQKALAAALGQIEKQFGKGSIMRL----GEDRSMDVETISTGSLSLDIALGAGGLPMGRI 385
Query: 123 VEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDS 182
VEIYG E+SGKTTL L VI AQ+ G CA++D E+ALDP A +G+D +NLL +QPD+
Sbjct: 386 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 445
Query: 183 AENLLSVVDTLTKSGXXXXXXXXXXXXLIPKCEIGVPINGMYSDAQSRIMTQALRKIHYS 242
E L + D L +SG L PK EI I + +R+M+QA+RK+ +
Sbjct: 446 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 505
Query: 243 LCQSHTLIIFLNQVKV 258
L QS+TL+IF+NQ+++
Sbjct: 506 LKQSNTLLIFINQIRM 521
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/196 (47%), Positives = 122/196 (62%), Gaps = 7/196 (3%)
Query: 66 KDNALRLALSQLANDFGKESMLSLKRFFGSRRG---PVISTGSLKLDLALGIGGLPKGRI 122
K AL AL Q+ FGK S++ L G R ISTGSL LD+ALG GGLP GRI
Sbjct: 679 KQKALAAALGQIEKQFGKGSIMRL----GEDRSMDVETISTGSLSLDIALGAGGLPMGRI 734
Query: 123 VEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDS 182
VEIYG E+SGKTTL L VI AQ+ G CA++D E+ALDP A +G+D +NLL +QPD+
Sbjct: 735 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 794
Query: 183 AENLLSVVDTLTKSGXXXXXXXXXXXXLIPKCEIGVPINGMYSDAQSRIMTQALRKIHYS 242
E L + D L +SG L PK EI I + +R+M+QA+RK+ +
Sbjct: 795 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 854
Query: 243 LCQSHTLIIFLNQVKV 258
L QS+TL+IF+NQ+++
Sbjct: 855 LKQSNTLLIFINQIRM 870
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/196 (47%), Positives = 122/196 (62%), Gaps = 7/196 (3%)
Query: 66 KDNALRLALSQLANDFGKESMLSLKRFFGSRRG---PVISTGSLKLDLALGIGGLPKGRI 122
K AL AL Q+ FGK S++ L G R ISTGSL LD+ALG GGLP GRI
Sbjct: 1028 KQKALAAALGQIEKQFGKGSIMRL----GEDRSMDVETISTGSLSLDIALGAGGLPMGRI 1083
Query: 123 VEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDS 182
VEIYG E+SGKTTL L VI AQ+ G CA++D E+ALDP A +G+D +NLL +QPD+
Sbjct: 1084 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 1143
Query: 183 AENLLSVVDTLTKSGXXXXXXXXXXXXLIPKCEIGVPINGMYSDAQSRIMTQALRKIHYS 242
E L + D L +SG L PK EI I + +R+M+QA+RK+ +
Sbjct: 1144 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 1203
Query: 243 LCQSHTLIIFLNQVKV 258
L QS+TL+IF+NQ+++
Sbjct: 1204 LKQSNTLLIFINQIRM 1219
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/196 (47%), Positives = 122/196 (62%), Gaps = 7/196 (3%)
Query: 66 KDNALRLALSQLANDFGKESMLSLKRFFGSRRG---PVISTGSLKLDLALGIGGLPKGRI 122
K AL AL Q+ FGK S++ L G R ISTGSL LD+ALG GGLP GRI
Sbjct: 1374 KQKALAAALGQIEKQFGKGSIMRL----GEDRSMDVETISTGSLSLDIALGAGGLPMGRI 1429
Query: 123 VEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDS 182
VEIYG E+SGKTTL L VI AQ+ G CA++D E+ALDP A +G+D +NLL +QPD+
Sbjct: 1430 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 1489
Query: 183 AENLLSVVDTLTKSGXXXXXXXXXXXXLIPKCEIGVPINGMYSDAQSRIMTQALRKIHYS 242
E L + D L +SG L PK EI I + +R+M+QA+RK+ +
Sbjct: 1490 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 1549
Query: 243 LCQSHTLIIFLNQVKV 258
L QS+TL+IF+NQ+++
Sbjct: 1550 LKQSNTLLIFINQIRM 1565
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/196 (47%), Positives = 122/196 (62%), Gaps = 7/196 (3%)
Query: 66 KDNALRLALSQLANDFGKESMLSLKRFFGSRRG---PVISTGSLKLDLALGIGGLPKGRI 122
K AL AL Q+ FGK S++ L G R ISTGSL LD+ALG GGLP GRI
Sbjct: 1722 KQKALAAALGQIEKQFGKGSIMRL----GEDRSMDVETISTGSLSLDIALGAGGLPMGRI 1777
Query: 123 VEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDS 182
VEIYG E+SGKTTL L VI AQ+ G CA++D E+ALDP A +G+D +NLL +QPD+
Sbjct: 1778 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 1837
Query: 183 AENLLSVVDTLTKSGXXXXXXXXXXXXLIPKCEIGVPINGMYSDAQSRIMTQALRKIHYS 242
E L + D L +SG L PK EI I + +R+M+QA+RK+ +
Sbjct: 1838 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 1897
Query: 243 LCQSHTLIIFLNQVKV 258
L QS+TL+IF+NQ+++
Sbjct: 1898 LKQSNTLLIFINQIRM 1913
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 80/159 (50%), Positives = 106/159 (66%)
Query: 100 VISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159
ISTGSL LD+ALG GGLP GRIVEIYG E+SGKTTL L VI AQ+ G CA++D E+A
Sbjct: 14 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 73
Query: 160 LDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGXXXXXXXXXXXXLIPKCEIGVP 219
LDP A +G+D +NLL +QPD+ E L + D L +SG L PK EI
Sbjct: 74 LDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGE 133
Query: 220 INGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKV 258
I + +R+M+QA+RK+ +L QS+TL+IF+NQ+++
Sbjct: 134 IGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 172
>pdb|1U94|A Chain A, Crystal Structure Of E. Coli Reca In A Compressed Helical
Filament Form 2
pdb|1U98|A Chain A, "crystal Structure Of E. Coli Reca In A Compressed Helical
Filament Form3"
pdb|1U99|A Chain A, "crystal Structures Of E. Coli Reca In A Compressed
Helical Filament Form 4"
pdb|1XMS|A Chain A, "e. Coli Reca In Complex With Mnamp-Pnp"
pdb|1XMV|A Chain A, "e. Coli Reca In Complex With Mgadp"
Length = 356
Score = 169 bits (429), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/196 (47%), Positives = 122/196 (62%), Gaps = 7/196 (3%)
Query: 66 KDNALRLALSQLANDFGKESMLSLKRFFGSRRG---PVISTGSLKLDLALGIGGLPKGRI 122
K AL AL Q+ FGK S++ L G R ISTGSL LD+ALG GGLP GRI
Sbjct: 10 KQKALAAALGQIEKQFGKGSIMRL----GEDRSMDVETISTGSLSLDIALGAGGLPMGRI 65
Query: 123 VEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDS 182
VEIYG E+SGKTTL L VI AQ+ G CA++D E+ALDP A +G+D +NLL +QPD+
Sbjct: 66 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 125
Query: 183 AENLLSVVDTLTKSGXXXXXXXXXXXXLIPKCEIGVPINGMYSDAQSRIMTQALRKIHYS 242
E L + D L +SG L PK EI I + +R+M+QA+RK+ +
Sbjct: 126 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 185
Query: 243 LCQSHTLIIFLNQVKV 258
L QS+TL+IF+NQ+++
Sbjct: 186 LKQSNTLLIFINQIRM 201
>pdb|2REC|A Chain A, Reca Hexamer Model, Electron Microscopy
pdb|2REC|B Chain B, Reca Hexamer Model, Electron Microscopy
pdb|2REC|C Chain C, Reca Hexamer Model, Electron Microscopy
pdb|2REC|D Chain D, Reca Hexamer Model, Electron Microscopy
pdb|2REC|E Chain E, Reca Hexamer Model, Electron Microscopy
pdb|2REC|F Chain F, Reca Hexamer Model, Electron Microscopy
Length = 353
Score = 169 bits (428), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/196 (47%), Positives = 122/196 (62%), Gaps = 7/196 (3%)
Query: 66 KDNALRLALSQLANDFGKESMLSLKRFFGSRRG---PVISTGSLKLDLALGIGGLPKGRI 122
K AL AL Q+ FGK S++ L G R ISTGSL LD+ALG GGLP GRI
Sbjct: 7 KQKALAAALGQIEKQFGKGSIMRL----GEDRSMDVETISTGSLSLDIALGAGGLPMGRI 62
Query: 123 VEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDS 182
VEIYG E+SGKTTL L VI AQ+ G CA++D E+ALDP A +G+D +NLL +QPD+
Sbjct: 63 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 122
Query: 183 AENLLSVVDTLTKSGXXXXXXXXXXXXLIPKCEIGVPINGMYSDAQSRIMTQALRKIHYS 242
E L + D L +SG L PK EI I + +R+M+QA+RK+ +
Sbjct: 123 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 182
Query: 243 LCQSHTLIIFLNQVKV 258
L QS+TL+IF+NQ+++
Sbjct: 183 LKQSNTLLIFINQIRM 198
>pdb|1N03|A Chain A, Model For Active Reca Filament
pdb|1N03|B Chain B, Model For Active Reca Filament
pdb|1N03|C Chain C, Model For Active Reca Filament
pdb|1N03|D Chain D, Model For Active Reca Filament
pdb|1N03|E Chain E, Model For Active Reca Filament
pdb|1N03|F Chain F, Model For Active Reca Filament
pdb|1N03|G Chain G, Model For Active Reca Filament
pdb|1REA|A Chain A, Structure Of The Reca Protein-Adp Complex
pdb|2REB|A Chain A, The Structure Of The E. Coli Reca Protein Monomer And
Polymer
Length = 352
Score = 169 bits (428), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/196 (47%), Positives = 122/196 (62%), Gaps = 7/196 (3%)
Query: 66 KDNALRLALSQLANDFGKESMLSLKRFFGSRRG---PVISTGSLKLDLALGIGGLPKGRI 122
K AL AL Q+ FGK S++ L G R ISTGSL LD+ALG GGLP GRI
Sbjct: 6 KQKALAAALGQIEKQFGKGSIMRL----GEDRSMDVETISTGSLSLDIALGAGGLPMGRI 61
Query: 123 VEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDS 182
VEIYG E+SGKTTL L VI AQ+ G CA++D E+ALDP A +G+D +NLL +QPD+
Sbjct: 62 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 121
Query: 183 AENLLSVVDTLTKSGXXXXXXXXXXXXLIPKCEIGVPINGMYSDAQSRIMTQALRKIHYS 242
E L + D L +SG L PK EI I + +R+M+QA+RK+ +
Sbjct: 122 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 181
Query: 243 LCQSHTLIIFLNQVKV 258
L QS+TL+IF+NQ+++
Sbjct: 182 LKQSNTLLIFINQIRM 197
>pdb|3CMT|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMT|D Chain D, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMW|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMW|C Chain C, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMX|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMX|D Chain D, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
Length = 1706
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/196 (47%), Positives = 122/196 (62%), Gaps = 7/196 (3%)
Query: 66 KDNALRLALSQLANDFGKESMLSLKRFFGSRRG---PVISTGSLKLDLALGIGGLPKGRI 122
K AL AL Q+ FGK S++ L G R ISTGSL LD+ALG GGLP GRI
Sbjct: 330 KQKALAAALGQIEKQFGKGSIMRL----GEDRSMDVETISTGSLSLDIALGAGGLPMGRI 385
Query: 123 VEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDS 182
VEIYG E+SGKTTL L VI AQ+ G CA++D E+ALDP A +G+D +NLL +QPD+
Sbjct: 386 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 445
Query: 183 AENLLSVVDTLTKSGXXXXXXXXXXXXLIPKCEIGVPINGMYSDAQSRIMTQALRKIHYS 242
E L + D L +SG L PK EI I + +R+M+QA+RK+ +
Sbjct: 446 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 505
Query: 243 LCQSHTLIIFLNQVKV 258
L QS+TL+IF+NQ+++
Sbjct: 506 LKQSNTLLIFINQIRM 521
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/196 (47%), Positives = 122/196 (62%), Gaps = 7/196 (3%)
Query: 66 KDNALRLALSQLANDFGKESMLSLKRFFGSRRG---PVISTGSLKLDLALGIGGLPKGRI 122
K AL AL Q+ FGK S++ L G R ISTGSL LD+ALG GGLP GRI
Sbjct: 679 KQKALAAALGQIEKQFGKGSIMRL----GEDRSMDVETISTGSLSLDIALGAGGLPMGRI 734
Query: 123 VEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDS 182
VEIYG E+SGKTTL L VI AQ+ G CA++D E+ALDP A +G+D +NLL +QPD+
Sbjct: 735 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 794
Query: 183 AENLLSVVDTLTKSGXXXXXXXXXXXXLIPKCEIGVPINGMYSDAQSRIMTQALRKIHYS 242
E L + D L +SG L PK EI I + +R+M+QA+RK+ +
Sbjct: 795 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 854
Query: 243 LCQSHTLIIFLNQVKV 258
L QS+TL+IF+NQ+++
Sbjct: 855 LKQSNTLLIFINQIRM 870
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/196 (47%), Positives = 122/196 (62%), Gaps = 7/196 (3%)
Query: 66 KDNALRLALSQLANDFGKESMLSLKRFFGSRRG---PVISTGSLKLDLALGIGGLPKGRI 122
K AL AL Q+ FGK S++ L G R ISTGSL LD+ALG GGLP GRI
Sbjct: 1029 KQKALAAALGQIEKQFGKGSIMRL----GEDRSMDVETISTGSLSLDIALGAGGLPMGRI 1084
Query: 123 VEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDS 182
VEIYG E+SGKTTL L VI AQ+ G CA++D E+ALDP A +G+D +NLL +QPD+
Sbjct: 1085 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 1144
Query: 183 AENLLSVVDTLTKSGXXXXXXXXXXXXLIPKCEIGVPINGMYSDAQSRIMTQALRKIHYS 242
E L + D L +SG L PK EI I + +R+M+QA+RK+ +
Sbjct: 1145 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 1204
Query: 243 LCQSHTLIIFLNQVKV 258
L QS+TL+IF+NQ+++
Sbjct: 1205 LKQSNTLLIFINQIRM 1220
Score = 169 bits (428), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/196 (47%), Positives = 122/196 (62%), Gaps = 7/196 (3%)
Query: 66 KDNALRLALSQLANDFGKESMLSLKRFFGSRRG---PVISTGSLKLDLALGIGGLPKGRI 122
K AL AL Q+ FGK S++ L G R ISTGSL LD+ALG GGLP GRI
Sbjct: 1378 KQKALAAALGQIEKQFGKGSIMRL----GEDRSMDVETISTGSLSLDIALGAGGLPMGRI 1433
Query: 123 VEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDS 182
VEIYG E+SGKTTL L VI AQ+ G CA++D E+ALDP A +G+D +NLL +QPD+
Sbjct: 1434 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 1493
Query: 183 AENLLSVVDTLTKSGXXXXXXXXXXXXLIPKCEIGVPINGMYSDAQSRIMTQALRKIHYS 242
E L + D L +SG L PK EI I + +R+M+QA+RK+ +
Sbjct: 1494 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 1553
Query: 243 LCQSHTLIIFLNQVKV 258
L QS+TL+IF+NQ+++
Sbjct: 1554 LKQSNTLLIFINQIRM 1569
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 80/159 (50%), Positives = 106/159 (66%)
Query: 100 VISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159
ISTGSL LD+ALG GGLP GRIVEIYG E+SGKTTL L VI AQ+ G CA++D E+A
Sbjct: 14 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 73
Query: 160 LDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGXXXXXXXXXXXXLIPKCEIGVP 219
LDP A +G+D +NLL +QPD+ E L + D L +SG L PK EI
Sbjct: 74 LDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGE 133
Query: 220 INGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKV 258
I + +R+M+QA+RK+ +L QS+TL+IF+NQ+++
Sbjct: 134 IGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 172
>pdb|3CMV|A Chain A, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|B Chain B, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|C Chain C, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|D Chain D, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|E Chain E, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|F Chain F, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|G Chain G, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
pdb|3CMV|H Chain H, Mechanism Of Homologous Recombination From The Reca-
SsdnaDSDNA STRUCTURES
Length = 1357
Score = 169 bits (427), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/196 (47%), Positives = 122/196 (62%), Gaps = 7/196 (3%)
Query: 66 KDNALRLALSQLANDFGKESMLSLKRFFGSRRG---PVISTGSLKLDLALGIGGLPKGRI 122
K AL AL Q+ FGK S++ L G R ISTGSL LD+ALG GGLP GRI
Sbjct: 330 KQKALAAALGQIEKQFGKGSIMRL----GEDRSMDVETISTGSLSLDIALGAGGLPMGRI 385
Query: 123 VEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDS 182
VEIYG E+SGKTTL L VI AQ+ G CA++D E+ALDP A +G+D +NLL +QPD+
Sbjct: 386 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 445
Query: 183 AENLLSVVDTLTKSGXXXXXXXXXXXXLIPKCEIGVPINGMYSDAQSRIMTQALRKIHYS 242
E L + D L +SG L PK EI I + +R+M+QA+RK+ +
Sbjct: 446 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 505
Query: 243 LCQSHTLIIFLNQVKV 258
L QS+TL+IF+NQ+++
Sbjct: 506 LKQSNTLLIFINQIRM 521
Score = 169 bits (427), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/196 (47%), Positives = 122/196 (62%), Gaps = 7/196 (3%)
Query: 66 KDNALRLALSQLANDFGKESMLSLKRFFGSRRG---PVISTGSLKLDLALGIGGLPKGRI 122
K AL AL Q+ FGK S++ L G R ISTGSL LD+ALG GGLP GRI
Sbjct: 679 KQKALAAALGQIEKQFGKGSIMRL----GEDRSMDVETISTGSLSLDIALGAGGLPMGRI 734
Query: 123 VEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDS 182
VEIYG E+SGKTTL L VI AQ+ G CA++D E+ALDP A +G+D +NLL +QPD+
Sbjct: 735 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 794
Query: 183 AENLLSVVDTLTKSGXXXXXXXXXXXXLIPKCEIGVPINGMYSDAQSRIMTQALRKIHYS 242
E L + D L +SG L PK EI I + +R+M+QA+RK+ +
Sbjct: 795 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 854
Query: 243 LCQSHTLIIFLNQVKV 258
L QS+TL+IF+NQ+++
Sbjct: 855 LKQSNTLLIFINQIRM 870
Score = 169 bits (427), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/196 (47%), Positives = 122/196 (62%), Gaps = 7/196 (3%)
Query: 66 KDNALRLALSQLANDFGKESMLSLKRFFGSRRG---PVISTGSLKLDLALGIGGLPKGRI 122
K AL AL Q+ FGK S++ L G R ISTGSL LD+ALG GGLP GRI
Sbjct: 1029 KQKALAAALGQIEKQFGKGSIMRL----GEDRSMDVETISTGSLSLDIALGAGGLPMGRI 1084
Query: 123 VEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDS 182
VEIYG E+SGKTTL L VI AQ+ G CA++D E+ALDP A +G+D +NLL +QPD+
Sbjct: 1085 VEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDT 1144
Query: 183 AENLLSVVDTLTKSGXXXXXXXXXXXXLIPKCEIGVPINGMYSDAQSRIMTQALRKIHYS 242
E L + D L +SG L PK EI I + +R+M+QA+RK+ +
Sbjct: 1145 GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 1204
Query: 243 LCQSHTLIIFLNQVKV 258
L QS+TL+IF+NQ+++
Sbjct: 1205 LKQSNTLLIFINQIRM 1220
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 80/159 (50%), Positives = 106/159 (66%)
Query: 100 VISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159
ISTGSL LD+ALG GGLP GRIVEIYG E+SGKTTL L VI AQ+ G CA++D E+A
Sbjct: 14 TISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 73
Query: 160 LDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGXXXXXXXXXXXXLIPKCEIGVP 219
LDP A +G+D +NLL +QPD+ E L + D L +SG L PK EI
Sbjct: 74 LDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGE 133
Query: 220 INGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKV 258
I + +R+M+QA+RK+ +L QS+TL+IF+NQ+++
Sbjct: 134 IGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRM 172
>pdb|2ZRC|A Chain A, Msreca Q196n Form Iv
pdb|2ZRD|A Chain A, Msreca Q196n Adp Form Iv
pdb|2ZRE|A Chain A, Msreca Q196n Atpgs Form Iv
pdb|2ZRF|A Chain A, Msreca Q196n Datp Form Iv
pdb|2ZRG|A Chain A, Msreca Q196n Datp Form Ii'
Length = 349
Score = 169 bits (427), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 85/194 (43%), Positives = 126/194 (64%), Gaps = 5/194 (2%)
Query: 66 KDNALRLALSQLANDFGKESMLSLKRFFGSRRGP--VISTGSLKLDLALGIGGLPKGRIV 123
++ AL LA++Q+ +FGK S++ L R P VI TGS+ LD+ALGIGGLP+GR++
Sbjct: 8 REKALELAMAQIDKNFGKGSVMRLGE---EVRQPISVIPTGSISLDVALGIGGLPRGRVI 64
Query: 124 EIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSA 183
EIYG E+SGKTT+ALH + AQ GG A++D E+ALDP A+ +G+D ++LL++QPD+
Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124
Query: 184 ENLLSVVDTLTKSGXXXXXXXXXXXXLIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSL 243
E L + D L +SG L+P+ EI + + Q+R+M+QALRK+ +L
Sbjct: 125 EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184
Query: 244 CQSHTLIIFLNQVK 257
S T IF+N ++
Sbjct: 185 NNSGTTAIFINNLR 198
>pdb|2ZRH|A Chain A, Msreca Q196a Form Iv
pdb|2ZRI|A Chain A, Msreca Q196a Adp Form Iv
pdb|2ZRJ|A Chain A, Msreca Q196a Atpgs Form Iv
pdb|2ZRK|A Chain A, Msreca Q196a Datp Form Iv
pdb|2ZRL|A Chain A, Msreca Q196a Datp Form Ii'
Length = 349
Score = 168 bits (426), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 85/194 (43%), Positives = 126/194 (64%), Gaps = 5/194 (2%)
Query: 66 KDNALRLALSQLANDFGKESMLSLKRFFGSRRGP--VISTGSLKLDLALGIGGLPKGRIV 123
++ AL LA++Q+ +FGK S++ L R P VI TGS+ LD+ALGIGGLP+GR++
Sbjct: 8 REKALELAMAQIDKNFGKGSVMRLGE---EVRQPISVIPTGSISLDVALGIGGLPRGRVI 64
Query: 124 EIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSA 183
EIYG E+SGKTT+ALH + AQ GG A++D E+ALDP A+ +G+D ++LL++QPD+
Sbjct: 65 EIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTG 124
Query: 184 ENLLSVVDTLTKSGXXXXXXXXXXXXLIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSL 243
E L + D L +SG L+P+ EI + + Q+R+M+QALRK+ +L
Sbjct: 125 EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGAL 184
Query: 244 CQSHTLIIFLNQVK 257
S T IF+N ++
Sbjct: 185 NNSGTTAIFINALR 198
>pdb|1G18|A Chain A, Reca-Adp-Alf4 Complex
pdb|1G19|A Chain A, Structure Of Reca Protein
pdb|1MO3|A Chain A, Reca-Adp Complex
pdb|1MO4|A Chain A, Reca-Atp-Gamma-S Complex
pdb|1MO5|A Chain A, Reca-Atp-Gamma-S-Mg Complex
pdb|1MO6|A Chain A, Reca-datp-mg Complex
Length = 350
Score = 167 bits (424), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 84/194 (43%), Positives = 126/194 (64%), Gaps = 5/194 (2%)
Query: 66 KDNALRLALSQLANDFGKESMLSLKRFFGSRRGP--VISTGSLKLDLALGIGGLPKGRIV 123
++ AL LA++Q+ +GK S++ R R P VI TGS+ LD+ALGIGGLP+GR++
Sbjct: 7 REKALELAVAQIEKSYGKGSVM---RLGDEARQPISVIPTGSIALDVALGIGGLPRGRVI 63
Query: 124 EIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSA 183
EIYG E+SGKTT+ALH + AQ GG A++D E+ALDP A+ +G+D ++LL++QPD+
Sbjct: 64 EIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTG 123
Query: 184 ENLLSVVDTLTKSGXXXXXXXXXXXXLIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSL 243
E L + D L +SG L+P+ E+ + + Q+R+M+QALRK+ +L
Sbjct: 124 EQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGAL 183
Query: 244 CQSHTLIIFLNQVK 257
S T IF+NQ++
Sbjct: 184 NNSGTTAIFINQLR 197
>pdb|1XP8|A Chain A, "deinococcus Radiodurans Reca In Complex With Atp-Gamma-S"
Length = 366
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 88/201 (43%), Positives = 128/201 (63%), Gaps = 9/201 (4%)
Query: 60 DAKIMQKDNALRLALSQLANDFGKESMLSLKRFFGSRRG---PVISTGSLKLDLALGIGG 116
DAK ++ A+ A+SQ+ FGK S++ L G+ V+STGSL LDLALG+GG
Sbjct: 17 DAK--ERSKAIETAMSQIEKAFGKGSIMKL----GAESKLDVQVVSTGSLSLDLALGVGG 70
Query: 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLL 176
+P+GRI EIYG E+ GKTTLAL ++ +AQK GG CA++D E+ALDP A A+G++ + LL
Sbjct: 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELL 130
Query: 177 IAQPDSAENLLSVVDTLTKSGXXXXXXXXXXXXLIPKCEIGVPINGMYSDAQSRIMTQAL 236
++QPD+ E L +++ L +SG L P+ EI + Q+R+M+QAL
Sbjct: 131 VSQPDNGEQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQAL 190
Query: 237 RKIHYSLCQSHTLIIFLNQVK 257
RK+ L ++ T IF+NQV+
Sbjct: 191 RKLTAILSKTGTAAIFINQVR 211
>pdb|2CVF|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVF|B Chain B, Crystal Structure Of The Radb Recombinase
pdb|2CVH|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVH|B Chain B, Crystal Structure Of The Radb Recombinase
Length = 220
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 100 VISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159
++STG+ LD LG GG G + ++YG ASGKTTLAL G AY+D E
Sbjct: 1 MLSTGTKSLDSLLG-GGFAPGVLTQVYGPYASGKTTLALQT---GLLSGKKVAYVDTEGG 56
Query: 160 LDPS----LAEAMGIDAE----NLLIAQPDSAENLLSVVDTLTKS 196
P +AE G++ E ++ P + V+ +L K+
Sbjct: 57 FSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKT 101
>pdb|4B2I|A Chain A, Humanised Monomeric Rada In Complex With Indazole
pdb|4B2L|A Chain A, Humanised Monomeric Rada In Complex With L-methylester
Tryptophan
pdb|4B32|A Chain A, Humanised Monomeric Rada In Complex With Napht-1-ol
pdb|4B33|A Chain A, Humanised Monomeric Rada In Complex With Napht-2-ol
pdb|4B34|A Chain A, Humanised Monomeric Rada In Complex With 2-amino
Benzothiazole
pdb|4B35|A Chain A, Humanised Monomeric Rada In Complex With 4-methylester
Indole
pdb|4B3C|A Chain A, Humanised Monomeric Rada In Complex With 5-hydroxy Indole
pdb|4B3D|A Chain A, Humanised Monomeric Rada In Complex With 5-methyl Indole
pdb|4B3D|C Chain C, Humanised Monomeric Rada In Complex With 5-methyl Indole
pdb|4B3B|A Chain A, Humanised Monomeric Rada In Complex With Fhta Tetrapeptide
Length = 231
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 11/86 (12%)
Query: 101 ISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLA------LHVIKEAQKLGGYCAYL 154
ISTGS LD LG GG+ I E++G SGKT LA + + E L G ++
Sbjct: 7 ISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVMWI 65
Query: 155 DVENALDP----SLAEAMGIDAENLL 176
D EN P +A+ G+D + +L
Sbjct: 66 DTENTFRPERIREIAQNRGLDPDEVL 91
>pdb|4A6P|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
pdb|4A6X|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Atp
pdb|4A6X|B Chain B, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Atp
pdb|4A74|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Amppnp
pdb|4A74|B Chain B, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Amppnp
pdb|4A7O|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus
Bound To Adp
Length = 231
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 11/86 (12%)
Query: 101 ISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLA------LHVIKEAQKLGGYCAYL 154
ISTGS LD LG GG+ I E++G SGKT LA + + E L G ++
Sbjct: 7 ISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWI 65
Query: 155 DVENALDP----SLAEAMGIDAENLL 176
D EN P +A+ G+D + +L
Sbjct: 66 DTENTFRPERIREIAQNRGLDPDEVL 91
>pdb|1PZN|A Chain A, Rad51 (Rada)
pdb|1PZN|B Chain B, Rad51 (Rada)
pdb|1PZN|C Chain C, Rad51 (Rada)
pdb|1PZN|D Chain D, Rad51 (Rada)
pdb|1PZN|E Chain E, Rad51 (Rada)
pdb|1PZN|F Chain F, Rad51 (Rada)
pdb|1PZN|G Chain G, Rad51 (Rada)
Length = 349
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 11/86 (12%)
Query: 101 ISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLA------LHVIKEAQKLGGYCAYL 154
ISTGS LD LG GG+ I E++G SGKT LA + + E L G ++
Sbjct: 113 ISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLAHTLAVXVQLPPEEGGLNGSVIWI 171
Query: 155 DVENALDP----SLAEAMGIDAENLL 176
D EN P +A+ G+D + +L
Sbjct: 172 DTENTFRPERIREIAQNRGLDPDEVL 197
>pdb|2W0M|A Chain A, Crystal Structure Of Sso2452 From Sulfolobus Solfataricus
P2
Length = 235
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 101 ISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL 160
+STG L D L GG+P+G + + G +GKT +LH I + + G C Y+ E +
Sbjct: 5 LSTGILDFD-KLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESR 63
Query: 161 DPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKS 196
D + +A + + + E L ++D L K
Sbjct: 64 DSIIRQAKQFNWDF-----EEYIEKKLIIIDALMKE 94
>pdb|1SZP|A Chain A, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|B Chain B, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|C Chain C, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|D Chain D, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|E Chain E, A Crystal Structure Of The Rad51 Filament
pdb|1SZP|F Chain F, A Crystal Structure Of The Rad51 Filament
Length = 321
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 17/115 (14%)
Query: 93 FGSRRGPVI--STGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQ---KL 147
F RR +I +TGS LD LG GG+ G I E++G +GK+ L + Q +
Sbjct: 71 FHMRRSELICLTTGSKNLDTLLG-GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDI 129
Query: 148 G---GYCAYLDVENALDP----SLAEAMGIDAE----NLLIAQPDSAENLLSVVD 191
G G C Y+D E P S+A+ G+D + N+ A+ +A++ L ++D
Sbjct: 130 GGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLD 184
>pdb|3LDA|A Chain A, Yeast Rad51 H352y Filament Interface Mutant
Length = 400
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 17/115 (14%)
Query: 93 FGSRRGPVI--STGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQ---KL 147
F RR +I +TGS LD LG GG+ G I E++G +GK+ L + Q +
Sbjct: 150 FHMRRSELICLTTGSKNLDTLLG-GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDI 208
Query: 148 G---GYCAYLDVENALDP----SLAEAMGIDAE----NLLIAQPDSAENLLSVVD 191
G G C Y+D E P S+A+ G+D + N+ A+ +A++ L ++D
Sbjct: 209 GGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLD 263
>pdb|1V5W|A Chain A, Crystal Structure Of The Human Dmc1 Protein
pdb|1V5W|B Chain B, Crystal Structure Of The Human Dmc1 Protein
Length = 343
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 15/105 (14%)
Query: 101 ISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLA--LHVIKEAQKLGGYCA----YL 154
I+TGS + D LG GG+ I E +G +GKT L+ L V + GGY ++
Sbjct: 104 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFI 162
Query: 155 DVENALDP----SLAEAMGIDA----ENLLIAQPDSAENLLSVVD 191
D EN P +A+ +D +N+L A+ ++E+ + ++D
Sbjct: 163 DTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLD 207
>pdb|2ZJB|A Chain A, Crystal Structure Of The Human Dmc1-M200v Polymorphic
Variant
pdb|2ZJB|B Chain B, Crystal Structure Of The Human Dmc1-M200v Polymorphic
Variant
Length = 343
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 15/105 (14%)
Query: 101 ISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLA--LHVIKEAQKLGGYCA----YL 154
I+TGS + D LG GG+ I E +G +GKT L+ L V + GGY ++
Sbjct: 104 ITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFI 162
Query: 155 DVENALDP----SLAEAMGIDA----ENLLIAQPDSAENLLSVVD 191
D EN P +A+ +D +N+L A+ ++E+ + ++D
Sbjct: 163 DTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQVELLD 207
>pdb|2DFL|A Chain A, Crystal Structure Of Left-Handed Rada Filament
pdb|2Z43|A Chain A, Structure Of A Twinned Crystal Of Rada
pdb|2Z43|B Chain B, Structure Of A Twinned Crystal Of Rada
pdb|2Z43|C Chain C, Structure Of A Twinned Crystal Of Rada
pdb|2ZUB|A Chain A, Left Handed Rada
pdb|2ZUB|B Chain B, Left Handed Rada
pdb|2ZUC|A Chain A, Crystal Structure Of Left-Handed Rada Filament
pdb|2ZUC|B Chain B, Crystal Structure Of Left-Handed Rada Filament
pdb|2ZUD|A Chain A, Crystal Structure Of Left-Handed Rada Filament
pdb|2ZUD|B Chain B, Crystal Structure Of Left-Handed Rada Filament
Length = 324
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 11/86 (12%)
Query: 101 ISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLA------LHVIKEAQKLGGYCAYL 154
ISTGS LD L GG+ + E +G SGKT L + + E L G Y+
Sbjct: 89 ISTGSQALDGLLA-GGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYI 147
Query: 155 DVENALD----PSLAEAMGIDAENLL 176
D E ++A+A+G+D +N++
Sbjct: 148 DTEGTFRWERIENMAKALGLDIDNVM 173
>pdb|2BKE|A Chain A, Conformational Flexibility Revealed By The Crystal
Structure Of A Crenarchaeal Rada
Length = 324
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 101 ISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLA------LHVIKEAQKLGGYCAYL 154
ISTGS LD L GG+ E +G SGKT L + + E L G Y+
Sbjct: 89 ISTGSQALDGLLA-GGIETRTXTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYI 147
Query: 155 DVENALD----PSLAEAMGIDAENL 175
D E + A+A+G+D +N+
Sbjct: 148 DTEGTFRWERIENXAKALGLDIDNV 172
>pdb|1N0W|A Chain A, Crystal Structure Of A Rad51-Brca2 Brc Repeat Complex
Length = 243
Score = 33.9 bits (76), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 11/86 (12%)
Query: 101 ISTGSLKLDLALGIGGLPKGRIVEIYGREASGKT----TLALHVIKEAQKLG--GYCAYL 154
I+TGS +LD L GG+ G I E +G +GKT TLA+ + G G Y+
Sbjct: 6 ITTGSKELDKLLQ-GGIETGSITEXFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAXYI 64
Query: 155 DVENALDP----SLAEAMGIDAENLL 176
D E P ++AE G+ ++L
Sbjct: 65 DTEGTFRPERLLAVAERYGLSGSDVL 90
>pdb|2KJQ|A Chain A, Solution Structure Of Protein Nmb1076 From Neisseria
Meningi Northeast Structural Genomics Consortium Target
Mr101b
Length = 149
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQ 179
G+ + ++G E +GK+ L + +A + G AY+D A L +A +AE L + Q
Sbjct: 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID---AASMPLTDA-AFEAEYLAVDQ 91
Query: 180 PDSAEN-----LLSVVDTLTKSG 197
+ N L S+ + SG
Sbjct: 92 VEKLGNEEQALLFSIFNRFRNSG 114
>pdb|3IO5|A Chain A, Crystal Structure Of A Dimeric Form Of The Uvsx
Recombinase Core Domain From Enterobacteria Phage T4
pdb|3IO5|B Chain B, Crystal Structure Of A Dimeric Form Of The Uvsx
Recombinase Core Domain From Enterobacteria Phage T4
Length = 333
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 100 VISTGSLKLDLALG---IGGLPKGRIVEIYGREASGKTTLALHVIKEA--QKLGGYCAYL 154
V+ T +++AL GG+ G ++ + G S K+ L ++ Q C +
Sbjct: 6 VVRTKIPMMNIALSGEITGGMQSGLLI-LAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFY 64
Query: 155 DVENALDPSLAEAMGIDAENLLIAQPDSAENL 186
D E + P+ +MG+D E ++ S E L
Sbjct: 65 DSEFGITPAYLRSMGVDPERVIHTPVQSLEQL 96
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 8/85 (9%)
Query: 117 LPKGRIVEIYGREASGKTTLALHVI-KEAQK-----LGGYCAYLDVENALDPSLAEAMGI 170
+PK R+V I G SGK++LA+ I E Q+ L Y + N P + E G+
Sbjct: 21 IPKNRLVVITGVSGSGKSSLAMDTIYAEGQRRYLESLSTYARQF-LGNLKKPDVDEIEGL 79
Query: 171 DAENLLIAQPDSAENLLSVVDTLTK 195
+ + I Q + N S V T+T+
Sbjct: 80 -SPAIAIDQKTVSHNPRSTVGTVTE 103
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 117 LPKGRIVEIYGREASGKTTLA 137
+P+G+ V + GR SGK+T+A
Sbjct: 366 IPQGKTVALVGRSGSGKSTIA 386
>pdb|2WHX|A Chain A, A Second Conformation Of The Ns3 Protease-Helicase From
Dengue Virus
Length = 618
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 104 GSLKLDLALGIGGLP----KGRIVEIYGREASGKTTLALHVIKEAQKLG 148
G++ LD G G P KG+++ +YG K+ + I +A+++G
Sbjct: 124 GAVTLDFKPGTSGSPIINKKGKVIGLYGNGVVTKSGDYVSAITQAERIG 172
>pdb|2VBC|A Chain A, Crystal Structure Of The Ns3 Protease-Helicase From Dengue
Virus
Length = 618
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 104 GSLKLDLALGIGGLP----KGRIVEIYGREASGKTTLALHVIKEAQKLG 148
G++ LD G G P KG+++ +YG K+ + I +A+++G
Sbjct: 124 GAVTLDFKPGTSGSPIINKKGKVIGLYGNGVVTKSGDYVSAITQAERIG 172
>pdb|2WZQ|A Chain A, Insertion Mutant E173gp174 Of The Ns3 Protease-Helicase
From Dengue Virus
Length = 619
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 104 GSLKLDLALGIGGLP----KGRIVEIYGREASGKTTLALHVIKEAQKLG 148
G++ LD G G P KG+++ +YG K+ + I +A+++G
Sbjct: 124 GAVTLDFKPGTSGSPIINKKGKVIGLYGNGVVTKSGDYVSAITQAERIG 172
>pdb|2R9V|A Chain A, Crystal Structure Of Atp Synthase Subunit Alpha (Tm1612)
From Thermotoga Maritima At 2.10 A Resolution
Length = 515
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 97 RGPV---ISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153
R PV + TG +D + IG +G+ I G +GKT +A+ I + G YC Y
Sbjct: 152 RKPVDTPLQTGIKAIDSXIPIG---RGQRELIIGDRQTGKTAIAIDTIINQKGQGVYCIY 208
Query: 154 LDV 156
+ +
Sbjct: 209 VAI 211
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,334,673
Number of Sequences: 62578
Number of extensions: 226395
Number of successful extensions: 669
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 637
Number of HSP's gapped (non-prelim): 49
length of query: 264
length of database: 14,973,337
effective HSP length: 97
effective length of query: 167
effective length of database: 8,903,271
effective search space: 1486846257
effective search space used: 1486846257
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)