Query 024705
Match_columns 264
No_of_seqs 349 out of 2662
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 06:44:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024705.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024705hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09354 recA recombinase A; P 100.0 1.9E-34 4.1E-39 255.8 20.4 197 64-261 5-201 (349)
2 cd00983 recA RecA is a bacter 100.0 3.5E-34 7.5E-39 252.5 19.2 196 66-262 2-197 (325)
3 TIGR02012 tigrfam_recA protein 100.0 7E-34 1.5E-38 250.4 19.9 195 66-261 2-196 (321)
4 PF00154 RecA: recA bacterial 100.0 4.5E-33 9.8E-38 244.6 19.1 196 68-263 1-196 (322)
5 PRK09519 recA DNA recombinatio 100.0 6.7E-30 1.4E-34 245.7 20.8 197 65-262 6-202 (790)
6 COG0468 RecA RecA/RadA recombi 100.0 9.1E-28 2E-32 207.4 18.3 192 67-263 8-202 (279)
7 TIGR02238 recomb_DMC1 meiotic 99.9 2.1E-25 4.6E-30 197.3 17.8 161 96-261 73-250 (313)
8 COG1066 Sms Predicted ATP-depe 99.9 2.4E-25 5.3E-30 197.3 15.2 151 96-259 70-222 (456)
9 PLN03187 meiotic recombination 99.9 1E-24 2.3E-29 194.3 19.0 160 97-261 104-280 (344)
10 cd01393 recA_like RecA is a b 99.9 1.5E-23 3.4E-28 177.8 15.5 156 101-261 1-173 (226)
11 PTZ00035 Rad51 protein; Provis 99.9 3.2E-23 7E-28 185.3 18.1 161 96-261 95-272 (337)
12 cd01121 Sms Sms (bacterial rad 99.9 1.9E-23 4.1E-28 188.7 16.1 152 96-259 59-212 (372)
13 PRK09361 radB DNA repair and r 99.9 2.2E-23 4.7E-28 177.0 15.5 156 99-261 3-166 (225)
14 TIGR00416 sms DNA repair prote 99.9 1.4E-23 3E-28 194.4 15.5 152 96-259 71-224 (454)
15 PLN03186 DNA repair protein RA 99.9 3.7E-23 8E-28 184.6 17.6 161 96-261 100-277 (342)
16 PF08423 Rad51: Rad51; InterP 99.9 1.2E-23 2.6E-28 181.6 14.0 161 97-262 16-193 (256)
17 cd01394 radB RadB. The archaea 99.9 5.2E-23 1.1E-27 173.8 15.5 154 101-260 1-161 (218)
18 PRK11823 DNA repair protein Ra 99.9 6.2E-23 1.4E-27 189.9 16.6 152 96-259 57-210 (446)
19 TIGR02655 circ_KaiC circadian 99.9 9.6E-24 2.1E-28 197.7 10.6 222 12-257 125-399 (484)
20 TIGR03877 thermo_KaiC_1 KaiC d 99.9 1.6E-22 3.5E-27 173.1 15.1 145 99-258 1-172 (237)
21 TIGR03878 thermo_KaiC_2 KaiC d 99.9 3.2E-22 7E-27 173.2 15.5 144 100-258 3-177 (259)
22 TIGR02239 recomb_RAD51 DNA rep 99.9 5.9E-22 1.3E-26 175.8 17.4 161 96-261 73-250 (316)
23 cd01123 Rad51_DMC1_radA Rad51_ 99.9 3.5E-22 7.6E-27 170.4 14.4 156 101-261 1-174 (235)
24 PRK05973 replicative DNA helic 99.9 4.1E-22 9E-27 169.1 13.8 170 67-263 22-199 (237)
25 PRK04328 hypothetical protein; 99.9 7.2E-22 1.6E-26 170.1 15.0 145 98-257 2-173 (249)
26 PRK04301 radA DNA repair and r 99.9 1.9E-21 4.2E-26 173.2 16.5 160 97-261 80-257 (317)
27 TIGR02236 recomb_radA DNA repa 99.9 5.4E-21 1.2E-25 169.9 16.2 160 96-260 72-250 (310)
28 TIGR02237 recomb_radB DNA repa 99.9 4.9E-21 1.1E-25 160.6 14.6 145 108-260 1-153 (209)
29 PF06745 KaiC: KaiC; InterPro 99.9 1.7E-21 3.7E-26 165.4 11.7 142 101-256 1-160 (226)
30 TIGR03600 phage_DnaB phage rep 99.9 3.4E-20 7.4E-25 171.3 19.6 155 97-263 173-360 (421)
31 PRK06067 flagellar accessory p 99.8 1.6E-20 3.4E-25 160.4 14.3 148 96-258 2-166 (234)
32 TIGR03881 KaiC_arch_4 KaiC dom 99.8 3.4E-20 7.3E-25 157.7 16.0 143 100-257 1-166 (229)
33 PRK09302 circadian clock prote 99.8 2.2E-21 4.8E-26 183.2 9.3 148 97-258 251-410 (509)
34 PF03796 DnaB_C: DnaB-like hel 99.8 3.1E-20 6.7E-25 160.9 15.3 153 100-263 1-186 (259)
35 PRK06321 replicative DNA helic 99.8 1.9E-19 4.2E-24 167.4 20.7 159 97-263 205-395 (472)
36 PHA02542 41 41 helicase; Provi 99.8 3E-20 6.4E-25 172.7 15.0 160 97-263 168-360 (473)
37 PRK08506 replicative DNA helic 99.8 1.4E-19 3E-24 168.9 19.0 156 97-263 171-358 (472)
38 PRK09165 replicative DNA helic 99.8 6.9E-20 1.5E-24 171.8 16.1 158 97-263 196-399 (497)
39 PRK08760 replicative DNA helic 99.8 1.6E-19 3.5E-24 168.4 18.1 156 97-263 208-395 (476)
40 PRK05595 replicative DNA helic 99.8 2.8E-19 6.1E-24 166.1 18.9 156 97-263 180-367 (444)
41 TIGR00665 DnaB replicative DNA 99.8 2.9E-19 6.4E-24 165.7 18.8 155 97-262 174-360 (434)
42 PRK05748 replicative DNA helic 99.8 4.4E-19 9.6E-24 165.0 19.9 157 97-263 182-371 (448)
43 PRK08006 replicative DNA helic 99.8 3.2E-19 7E-24 166.0 16.6 156 97-263 203-392 (471)
44 TIGR02655 circ_KaiC circadian 99.8 1.1E-19 2.5E-24 170.2 13.6 148 99-259 1-169 (484)
45 cd01122 GP4d_helicase GP4d_hel 99.8 2.1E-19 4.7E-24 156.5 13.6 154 97-260 9-194 (271)
46 PRK09302 circadian clock prote 99.8 2E-19 4.3E-24 169.9 14.4 150 96-258 8-178 (509)
47 TIGR03880 KaiC_arch_3 KaiC dom 99.8 5.8E-19 1.2E-23 149.7 14.8 141 104-257 1-154 (224)
48 PRK05636 replicative DNA helic 99.8 6.5E-19 1.4E-23 165.0 15.7 156 97-263 244-431 (505)
49 PRK08840 replicative DNA helic 99.8 1.3E-18 2.9E-23 161.5 16.4 156 97-263 196-385 (464)
50 PRK06904 replicative DNA helic 99.8 1.1E-18 2.4E-23 162.6 15.8 156 97-263 200-390 (472)
51 PRK07004 replicative DNA helic 99.8 1.2E-18 2.6E-23 162.0 15.4 156 97-263 192-380 (460)
52 cd00984 DnaB_C DnaB helicase C 99.8 2E-18 4.4E-23 147.8 13.8 143 107-260 2-176 (242)
53 PRK06749 replicative DNA helic 99.8 2.9E-18 6.3E-23 158.0 15.5 157 97-263 165-356 (428)
54 PRK07773 replicative DNA helic 99.8 5.5E-18 1.2E-22 168.9 16.5 156 97-263 196-383 (886)
55 KOG1434 Meiotic recombination 99.8 1.6E-19 3.4E-24 150.9 4.6 162 96-262 92-271 (335)
56 COG0467 RAD55 RecA-superfamily 99.8 2.1E-17 4.5E-22 143.3 14.9 146 98-256 2-170 (260)
57 COG0305 DnaB Replicative DNA h 99.7 8E-17 1.7E-21 146.5 16.6 155 98-263 176-362 (435)
58 KOG1564 DNA repair protein RHP 99.7 2.3E-17 4.9E-22 139.9 10.7 160 97-261 80-267 (351)
59 PRK08533 flagellar accessory p 99.7 1.8E-16 3.9E-21 135.0 13.4 145 99-257 4-163 (230)
60 PF13481 AAA_25: AAA domain; P 99.7 3.6E-17 7.8E-22 135.3 7.1 151 97-259 10-191 (193)
61 COG2874 FlaH Predicted ATPases 99.7 1.5E-15 3.3E-20 124.6 13.3 143 100-257 9-168 (235)
62 cd01124 KaiC KaiC is a circadi 99.5 7.6E-14 1.6E-18 114.6 11.6 124 122-259 1-142 (187)
63 KOG1433 DNA repair protein RAD 99.5 1E-13 2.2E-18 122.1 10.8 162 96-262 88-260 (326)
64 cd01120 RecA-like_NTPases RecA 99.4 5.6E-12 1.2E-16 100.3 13.4 133 122-261 1-141 (165)
65 cd01125 repA Hexameric Replica 99.4 7.9E-12 1.7E-16 107.1 13.0 128 120-259 1-161 (239)
66 COG1136 SalX ABC-type antimicr 99.4 4.9E-12 1.1E-16 106.3 11.4 74 116-189 27-106 (226)
67 COG1125 OpuBA ABC-type proline 99.4 3.1E-12 6.7E-17 107.9 9.0 140 116-260 23-199 (309)
68 COG4555 NatA ABC-type Na+ tran 99.3 1.7E-11 3.8E-16 100.1 12.2 137 107-264 17-200 (245)
69 COG2884 FtsE Predicted ATPase 99.3 1.8E-12 3.9E-17 104.8 5.9 83 100-184 10-97 (223)
70 COG1121 ZnuC ABC-type Mn/Zn tr 99.3 1.4E-11 3E-16 105.1 10.9 129 116-264 26-206 (254)
71 COG1131 CcmA ABC-type multidru 99.3 5E-12 1.1E-16 111.4 7.6 133 116-264 27-204 (293)
72 COG1120 FepC ABC-type cobalami 99.3 4.1E-11 8.8E-16 102.7 11.2 127 116-261 24-203 (258)
73 COG3842 PotA ABC-type spermidi 99.3 5.1E-12 1.1E-16 112.7 5.1 74 116-189 27-100 (352)
74 COG3598 RepA RecA-family ATPas 99.3 9E-11 1.9E-15 101.9 12.5 133 115-258 84-243 (402)
75 PRK13537 nodulation ABC transp 99.3 4.8E-11 1E-15 105.9 11.1 132 116-264 29-205 (306)
76 COG1122 CbiO ABC-type cobalt t 99.2 3.1E-11 6.8E-16 102.8 8.9 144 116-263 26-205 (235)
77 COG4152 ABC-type uncharacteriz 99.2 7.8E-11 1.7E-15 98.9 11.0 127 116-264 24-197 (300)
78 cd03229 ABC_Class3 This class 99.2 7.7E-11 1.7E-15 96.4 10.8 130 116-263 22-167 (178)
79 COG1126 GlnQ ABC-type polar am 99.2 1E-11 2.2E-16 102.5 5.4 127 116-260 24-199 (240)
80 PRK04296 thymidine kinase; Pro 99.2 1.4E-10 3.1E-15 96.0 11.5 113 120-258 2-117 (190)
81 cd03230 ABC_DR_subfamily_A Thi 99.2 1.2E-10 2.5E-15 94.9 10.8 128 116-262 22-160 (173)
82 TIGR01188 drrA daunorubicin re 99.2 1.3E-10 2.9E-15 102.9 11.6 71 116-186 15-86 (302)
83 cd03216 ABC_Carb_Monos_I This 99.2 1.5E-10 3.2E-15 93.5 10.2 120 116-262 22-147 (163)
84 PRK13536 nodulation factor exp 99.2 1.3E-10 2.8E-15 104.5 10.9 131 117-264 64-239 (340)
85 COG1118 CysA ABC-type sulfate/ 99.2 3.5E-11 7.7E-16 104.0 6.7 145 116-263 24-204 (345)
86 cd03259 ABC_Carb_Solutes_like 99.2 1.4E-10 3E-15 97.4 10.3 38 116-153 22-59 (213)
87 COG1127 Ttg2A ABC-type transpo 99.2 6.4E-11 1.4E-15 99.3 7.9 131 116-264 30-213 (263)
88 COG0410 LivF ABC-type branched 99.2 6.4E-11 1.4E-15 98.7 7.2 144 116-259 25-199 (237)
89 cd03301 ABC_MalK_N The N-termi 99.2 1.6E-10 3.5E-15 97.1 9.8 38 116-153 22-59 (213)
90 cd03261 ABC_Org_Solvent_Resist 99.2 3.1E-10 6.6E-15 96.9 11.1 68 116-183 22-94 (235)
91 cd03265 ABC_DrrA DrrA is the A 99.2 4E-10 8.7E-15 95.2 11.7 62 116-177 22-84 (220)
92 cd03222 ABC_RNaseL_inhibitor T 99.2 2.9E-10 6.2E-15 93.0 10.4 116 116-263 21-138 (177)
93 cd03298 ABC_ThiQ_thiamine_tran 99.2 2.7E-10 5.9E-15 95.6 10.5 37 116-152 20-56 (211)
94 PRK11650 ugpC glycerol-3-phosp 99.2 2.1E-10 4.5E-15 103.8 10.4 71 116-187 26-97 (356)
95 cd03246 ABCC_Protease_Secretio 99.2 4.9E-10 1.1E-14 91.2 11.6 125 116-261 24-160 (173)
96 COG1135 AbcC ABC-type metal io 99.1 4.5E-11 9.7E-16 103.5 5.4 142 105-264 19-209 (339)
97 TIGR03265 PhnT2 putative 2-ami 99.1 2.6E-10 5.5E-15 103.1 10.6 71 116-187 26-97 (353)
98 COG3845 ABC-type uncharacteriz 99.1 2.7E-10 5.8E-15 104.1 10.6 139 104-263 16-206 (501)
99 cd03266 ABC_NatA_sodium_export 99.1 5E-10 1.1E-14 94.4 11.7 64 116-179 27-91 (218)
100 COG3839 MalK ABC-type sugar tr 99.1 7.7E-11 1.7E-15 104.7 6.7 72 116-187 25-96 (338)
101 cd03228 ABCC_MRP_Like The MRP 99.1 4.3E-10 9.3E-15 91.4 10.6 125 116-262 24-160 (171)
102 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.1 3.7E-10 8.1E-15 95.2 10.6 38 116-153 26-63 (218)
103 cd03258 ABC_MetN_methionine_tr 99.1 6E-10 1.3E-14 94.9 11.8 64 116-179 27-95 (233)
104 cd03215 ABC_Carb_Monos_II This 99.1 4.8E-10 1E-14 92.0 10.7 129 116-263 22-170 (182)
105 cd03256 ABC_PhnC_transporter A 99.1 5E-10 1.1E-14 95.8 11.2 38 116-153 23-60 (241)
106 TIGR01288 nodI ATP-binding ABC 99.1 4.4E-10 9.4E-15 99.7 11.1 70 116-185 26-96 (303)
107 PRK11000 maltose/maltodextrin 99.1 3.3E-10 7.2E-15 103.0 10.3 70 116-185 25-94 (369)
108 PRK11432 fbpC ferric transport 99.1 3.9E-10 8.5E-15 101.8 10.6 71 116-187 28-99 (351)
109 cd03293 ABC_NrtD_SsuB_transpor 99.1 3.8E-10 8.2E-15 95.3 9.6 37 116-152 26-62 (220)
110 TIGR03258 PhnT 2-aminoethylpho 99.1 4.5E-10 9.7E-15 101.8 10.6 71 116-187 27-100 (362)
111 TIGR02315 ABC_phnC phosphonate 99.1 7.3E-10 1.6E-14 94.9 11.4 38 116-153 24-61 (243)
112 PRK09452 potA putrescine/sperm 99.1 4.7E-10 1E-14 102.1 10.5 69 116-185 36-105 (375)
113 TIGR01277 thiQ thiamine ABC tr 99.1 5.5E-10 1.2E-14 93.9 10.2 38 116-153 20-57 (213)
114 cd03268 ABC_BcrA_bacitracin_re 99.1 9.6E-10 2.1E-14 92.0 11.6 127 116-262 22-191 (208)
115 TIGR00960 3a0501s02 Type II (G 99.1 6.6E-10 1.4E-14 93.6 10.6 67 116-183 25-97 (216)
116 COG4604 CeuD ABC-type enteroch 99.1 3.1E-11 6.8E-16 98.3 2.4 57 116-173 23-82 (252)
117 cd03296 ABC_CysA_sulfate_impor 99.1 5.1E-10 1.1E-14 95.8 9.9 38 116-153 24-61 (239)
118 TIGR02314 ABC_MetN D-methionin 99.1 6E-10 1.3E-14 100.2 10.8 70 116-185 27-101 (343)
119 PRK11153 metN DL-methionine tr 99.1 5.5E-10 1.2E-14 100.7 10.5 133 116-264 27-208 (343)
120 cd03225 ABC_cobalt_CbiO_domain 99.1 9.5E-10 2.1E-14 92.2 11.2 59 116-174 23-83 (211)
121 PRK10771 thiQ thiamine transpo 99.1 8.3E-10 1.8E-14 94.0 10.8 38 116-153 21-58 (232)
122 PRK11607 potG putrescine trans 99.1 6.1E-10 1.3E-14 101.5 10.5 72 116-188 41-113 (377)
123 cd03213 ABCG_EPDR ABCG transpo 99.1 9.2E-10 2E-14 91.3 10.7 126 116-261 31-176 (194)
124 TIGR03410 urea_trans_UrtE urea 99.1 1.2E-09 2.6E-14 92.9 11.5 63 116-178 22-87 (230)
125 TIGR03522 GldA_ABC_ATP gliding 99.1 8.7E-10 1.9E-14 97.7 11.0 72 116-187 24-96 (301)
126 PRK11144 modC molybdate transp 99.1 7E-10 1.5E-14 100.3 10.6 131 116-263 20-195 (352)
127 cd03214 ABC_Iron-Siderophores_ 99.1 1.6E-09 3.4E-14 88.8 11.8 130 116-263 21-164 (180)
128 cd03292 ABC_FtsE_transporter F 99.1 1.3E-09 2.8E-14 91.5 11.5 38 116-153 23-60 (214)
129 PRK11247 ssuB aliphatic sulfon 99.1 8.7E-10 1.9E-14 95.5 10.6 37 116-152 34-70 (257)
130 cd03269 ABC_putative_ATPase Th 99.1 1E-09 2.2E-14 92.1 10.2 36 117-152 23-58 (210)
131 cd03262 ABC_HisP_GlnQ_permease 99.1 1.6E-09 3.4E-14 91.0 11.4 38 116-153 22-59 (213)
132 COG1116 TauB ABC-type nitrate/ 99.1 9.4E-11 2E-15 99.0 3.9 39 116-154 25-63 (248)
133 PRK10851 sulfate/thiosulfate t 99.1 9.3E-10 2E-14 99.5 10.6 66 117-183 25-91 (353)
134 TIGR02673 FtsE cell division A 99.1 1.3E-09 2.9E-14 91.6 10.8 38 116-153 24-61 (214)
135 cd03237 ABC_RNaseL_inhibitor_d 99.1 1.5E-09 3.2E-14 93.5 11.1 131 115-263 20-182 (246)
136 PRK11629 lolD lipoprotein tran 99.1 1.6E-09 3.5E-14 92.3 11.1 38 116-153 31-68 (233)
137 cd03226 ABC_cobalt_CbiO_domain 99.1 1.1E-09 2.4E-14 91.4 9.8 38 116-153 22-59 (205)
138 cd03218 ABC_YhbG The ABC trans 99.1 1.5E-09 3.3E-14 92.3 10.8 38 116-153 22-59 (232)
139 TIGR03864 PQQ_ABC_ATP ABC tran 99.1 1.7E-09 3.8E-14 92.3 11.2 38 116-153 23-60 (236)
140 cd03300 ABC_PotA_N PotA is an 99.1 1.6E-09 3.4E-14 92.4 10.8 37 117-153 23-59 (232)
141 PRK13548 hmuV hemin importer A 99.0 1.7E-09 3.8E-14 93.6 11.2 38 116-153 24-61 (258)
142 cd03294 ABC_Pro_Gly_Bertaine T 99.0 1.4E-09 3.1E-14 94.8 10.6 38 116-153 46-83 (269)
143 cd03232 ABC_PDR_domain2 The pl 99.0 2.1E-09 4.5E-14 89.0 11.1 122 116-258 29-169 (192)
144 KOG2373 Predicted mitochondria 99.0 4.8E-10 1E-14 98.3 7.5 146 104-259 259-427 (514)
145 cd03263 ABC_subfamily_A The AB 99.0 2.3E-09 5E-14 90.4 11.5 61 116-176 24-85 (220)
146 TIGR01186 proV glycine betaine 99.0 1.2E-09 2.6E-14 99.0 10.3 71 116-187 15-92 (363)
147 TIGR02211 LolD_lipo_ex lipopro 99.0 1.8E-09 4E-14 91.1 10.8 38 116-153 27-64 (221)
148 PRK11248 tauB taurine transpor 99.0 1.3E-09 2.8E-14 94.3 10.0 38 116-153 23-60 (255)
149 COG3638 ABC-type phosphate/pho 99.0 2.1E-09 4.6E-14 90.0 10.7 141 102-263 14-214 (258)
150 TIGR02142 modC_ABC molybdenum 99.0 1.3E-09 2.9E-14 98.6 10.3 38 116-153 19-56 (354)
151 PRK10584 putative ABC transpor 99.0 2.2E-09 4.8E-14 91.1 11.1 38 116-153 32-69 (228)
152 cd00267 ABC_ATPase ABC (ATP-bi 99.0 2.6E-09 5.6E-14 85.5 10.9 120 117-263 22-146 (157)
153 cd03267 ABC_NatA_like Similar 99.0 1.8E-09 3.9E-14 92.3 10.5 38 116-153 43-80 (236)
154 cd03299 ABC_ModC_like Archeal 99.0 1.9E-09 4.2E-14 92.0 10.7 37 117-153 22-58 (235)
155 cd03257 ABC_NikE_OppD_transpor 99.0 1.9E-09 4.1E-14 91.4 10.6 38 116-153 27-64 (228)
156 TIGR01184 ntrCD nitrate transp 99.0 2.5E-09 5.4E-14 91.1 11.2 37 117-153 8-44 (230)
157 PRK13650 cbiO cobalt transport 99.0 1.9E-09 4.1E-14 94.5 10.7 59 116-174 29-89 (279)
158 COG1124 DppF ABC-type dipeptid 99.0 1.9E-09 4.2E-14 90.6 10.1 130 116-264 29-209 (252)
159 cd03247 ABCC_cytochrome_bd The 99.0 2.1E-09 4.5E-14 87.9 10.2 124 116-261 24-161 (178)
160 PRK13635 cbiO cobalt transport 99.0 2.1E-09 4.5E-14 94.3 10.8 59 116-174 29-89 (279)
161 PRK11831 putative ABC transpor 99.0 2.1E-09 4.6E-14 93.6 10.8 38 116-153 29-66 (269)
162 cd03231 ABC_CcmA_heme_exporter 99.0 3E-09 6.5E-14 88.7 11.2 37 117-153 23-59 (201)
163 cd03297 ABC_ModC_molybdenum_tr 99.0 2.2E-09 4.7E-14 90.3 10.5 36 117-153 21-56 (214)
164 PRK11264 putative amino-acid A 99.0 2.9E-09 6.3E-14 91.6 11.4 38 116-153 25-62 (250)
165 PRK13538 cytochrome c biogenes 99.0 3.1E-09 6.6E-14 88.8 11.2 38 116-153 23-60 (204)
166 COG0411 LivG ABC-type branched 99.0 7.7E-10 1.7E-14 93.0 7.4 141 104-264 16-217 (250)
167 TIGR00968 3a0106s01 sulfate AB 99.0 2.3E-09 5.1E-14 91.6 10.6 36 117-152 23-58 (237)
168 cd03238 ABC_UvrA The excision 99.0 8.1E-09 1.8E-13 84.3 13.3 124 116-260 17-152 (176)
169 cd03295 ABC_OpuCA_Osmoprotecti 99.0 3.1E-09 6.8E-14 91.1 11.4 67 116-183 23-92 (242)
170 COG4181 Predicted ABC-type tra 99.0 2.9E-10 6.2E-15 90.8 4.4 126 117-258 33-208 (228)
171 PRK10070 glycine betaine trans 99.0 1.8E-09 3.9E-14 99.0 10.3 72 116-187 50-127 (400)
172 PRK11300 livG leucine/isoleuci 99.0 3.3E-09 7.2E-14 91.5 11.1 38 116-153 27-64 (255)
173 TIGR03005 ectoine_ehuA ectoine 99.0 3.1E-09 6.6E-14 91.7 10.8 38 116-153 22-59 (252)
174 PRK10908 cell division protein 99.0 3.5E-09 7.6E-14 89.5 11.0 38 116-153 24-61 (222)
175 COG3840 ThiQ ABC-type thiamine 99.0 7.6E-10 1.6E-14 89.3 6.4 46 116-161 21-66 (231)
176 PRK14250 phosphate ABC transpo 99.0 2.4E-09 5.3E-14 91.8 10.0 37 117-153 26-62 (241)
177 PRK09493 glnQ glutamine ABC tr 99.0 4.4E-09 9.5E-14 90.0 11.4 38 116-153 23-60 (240)
178 cd00544 CobU Adenosylcobinamid 99.0 2E-09 4.4E-14 87.3 8.8 120 122-255 1-124 (169)
179 COG1129 MglA ABC-type sugar tr 99.0 2.6E-09 5.6E-14 99.1 10.5 139 104-264 20-212 (500)
180 PRK13543 cytochrome c biogenes 99.0 4.3E-09 9.3E-14 88.6 11.0 38 116-153 33-70 (214)
181 PRK13652 cbiO cobalt transport 99.0 4.5E-09 9.8E-14 92.0 11.3 59 116-174 26-86 (277)
182 PRK13647 cbiO cobalt transport 99.0 3.4E-09 7.4E-14 92.6 10.5 59 116-174 27-87 (274)
183 PRK15112 antimicrobial peptide 99.0 3.2E-09 7E-14 92.4 10.3 39 116-154 35-73 (267)
184 PRK10575 iron-hydroxamate tran 99.0 3.5E-09 7.7E-14 92.0 10.5 38 116-153 33-70 (265)
185 PRK13634 cbiO cobalt transport 99.0 2.5E-09 5.5E-14 94.2 9.6 59 116-174 29-93 (290)
186 PRK11614 livF leucine/isoleuci 99.0 4.4E-09 9.6E-14 89.8 10.9 39 116-154 27-65 (237)
187 PRK13637 cbiO cobalt transport 99.0 3.5E-09 7.5E-14 93.2 10.5 60 116-175 29-92 (287)
188 PRK10247 putative ABC transpor 99.0 6.1E-09 1.3E-13 88.3 11.6 38 116-153 29-66 (225)
189 PRK10253 iron-enterobactin tra 99.0 4.4E-09 9.6E-14 91.4 11.0 38 116-153 29-66 (265)
190 PRK09536 btuD corrinoid ABC tr 99.0 4.1E-10 8.9E-15 103.2 4.7 62 116-177 25-88 (402)
191 PRK13540 cytochrome c biogenes 99.0 6.6E-09 1.4E-13 86.5 11.6 58 117-175 24-83 (200)
192 COG1137 YhbG ABC-type (unclass 99.0 6.9E-11 1.5E-15 96.5 -0.4 149 116-264 26-206 (243)
193 PRK10895 lipopolysaccharide AB 99.0 5.1E-09 1.1E-13 89.7 11.0 37 117-153 26-62 (241)
194 cd03224 ABC_TM1139_LivF_branch 99.0 6.5E-10 1.4E-14 93.9 5.4 68 116-183 22-92 (222)
195 cd03235 ABC_Metallic_Cations A 99.0 4.7E-09 1E-13 88.2 10.6 38 116-153 21-58 (213)
196 TIGR03415 ABC_choXWV_ATP choli 99.0 2E-09 4.4E-14 98.0 8.7 69 117-186 47-126 (382)
197 TIGR02324 CP_lyasePhnL phospho 99.0 6.4E-09 1.4E-13 88.0 11.3 38 116-153 30-67 (224)
198 PRK09984 phosphonate/organopho 99.0 7E-09 1.5E-13 90.0 11.8 30 117-146 27-56 (262)
199 PRK13636 cbiO cobalt transport 99.0 4.5E-09 9.7E-14 92.3 10.6 60 116-175 28-91 (283)
200 PRK10619 histidine/lysine/argi 99.0 5.1E-09 1.1E-13 90.6 10.7 40 116-156 27-66 (257)
201 cd03233 ABC_PDR_domain1 The pl 99.0 3.9E-09 8.4E-14 88.1 9.6 128 116-262 29-185 (202)
202 cd03219 ABC_Mj1267_LivG_branch 99.0 7.1E-10 1.5E-14 94.6 5.3 71 116-186 22-95 (236)
203 TIGR02770 nickel_nikD nickel i 99.0 4.9E-09 1.1E-13 89.2 10.4 37 117-153 9-49 (230)
204 TIGR03608 L_ocin_972_ABC putat 99.0 3.9E-09 8.4E-14 88.1 9.6 38 116-153 20-57 (206)
205 TIGR01166 cbiO cobalt transpor 99.0 5.5E-09 1.2E-13 86.2 10.1 38 116-153 14-51 (190)
206 PRK13646 cbiO cobalt transport 99.0 4.8E-09 1E-13 92.3 10.3 59 116-174 29-93 (286)
207 TIGR02769 nickel_nikE nickel i 98.9 6.1E-09 1.3E-13 90.5 10.6 38 116-153 33-70 (265)
208 PRK13648 cbiO cobalt transport 98.9 6.8E-09 1.5E-13 90.5 10.9 58 116-174 31-91 (269)
209 PRK13539 cytochrome c biogenes 98.9 2.7E-09 5.9E-14 89.4 8.1 38 116-153 24-61 (207)
210 cd03264 ABC_drug_resistance_li 98.9 9.5E-09 2.1E-13 86.2 11.4 62 116-178 22-84 (211)
211 PRK13640 cbiO cobalt transport 98.9 7E-09 1.5E-13 91.0 11.0 58 116-174 29-92 (282)
212 PRK11124 artP arginine transpo 98.9 8.6E-09 1.9E-13 88.3 11.2 38 116-153 24-61 (242)
213 PRK11308 dppF dipeptide transp 98.9 5.6E-09 1.2E-13 93.5 10.4 39 117-155 38-76 (327)
214 TIGR03873 F420-0_ABC_ATP propo 98.9 8.1E-09 1.8E-13 89.3 10.8 38 116-153 23-60 (256)
215 PRK13651 cobalt transporter AT 98.9 8.4E-09 1.8E-13 91.5 11.0 38 116-153 29-66 (305)
216 PRK03695 vitamin B12-transport 98.9 9.8E-09 2.1E-13 88.4 11.0 38 117-156 19-56 (248)
217 TIGR03740 galliderm_ABC gallid 98.9 8.4E-09 1.8E-13 87.3 10.4 36 117-152 23-58 (223)
218 PRK15439 autoinducer 2 ABC tra 98.9 6E-09 1.3E-13 98.8 10.3 130 116-264 33-207 (510)
219 cd03217 ABC_FeS_Assembly ABC-t 98.9 6.4E-10 1.4E-14 92.7 3.3 128 116-262 22-169 (200)
220 PRK13638 cbiO cobalt transport 98.9 9.3E-09 2E-13 89.7 10.6 38 116-153 23-60 (271)
221 COG4586 ABC-type uncharacteriz 98.9 8.9E-09 1.9E-13 88.0 10.1 133 116-264 46-224 (325)
222 PRK15079 oligopeptide ABC tran 98.9 8.6E-09 1.9E-13 92.4 10.5 38 116-153 43-80 (331)
223 PRK10418 nikD nickel transport 98.9 8.6E-09 1.9E-13 89.0 10.1 31 116-146 25-55 (254)
224 COG4608 AppF ABC-type oligopep 98.9 1.2E-08 2.5E-13 87.5 10.7 138 106-263 27-176 (268)
225 TIGR03411 urea_trans_UrtD urea 98.9 1.3E-08 2.8E-13 87.2 11.1 39 116-154 24-62 (242)
226 PRK13547 hmuV hemin importer A 98.9 1.3E-08 2.9E-13 88.8 11.3 32 116-147 23-54 (272)
227 PRK09544 znuC high-affinity zi 98.9 1.9E-08 4.1E-13 86.8 12.1 130 116-263 26-187 (251)
228 PRK13645 cbiO cobalt transport 98.9 8E-09 1.7E-13 91.0 9.7 38 116-153 33-70 (289)
229 TIGR01189 ccmA heme ABC export 98.9 1.4E-08 3E-13 84.4 10.6 37 116-152 22-58 (198)
230 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.9 2E-08 4.4E-13 79.3 10.9 109 116-262 22-132 (144)
231 PRK13642 cbiO cobalt transport 98.9 1.2E-08 2.7E-13 89.2 10.6 38 116-153 29-66 (277)
232 PRK13643 cbiO cobalt transport 98.9 9.2E-09 2E-13 90.6 9.8 58 116-174 28-92 (288)
233 PRK11231 fecE iron-dicitrate t 98.9 1.2E-08 2.6E-13 88.2 10.4 38 116-153 24-61 (255)
234 PRK13639 cbiO cobalt transport 98.9 1.4E-08 2.9E-13 88.9 10.7 59 116-174 24-86 (275)
235 PRK13641 cbiO cobalt transport 98.9 1.2E-08 2.5E-13 89.9 10.4 58 116-174 29-93 (287)
236 PRK13632 cbiO cobalt transport 98.9 1.3E-08 2.8E-13 88.9 10.4 38 116-153 31-68 (271)
237 cd03251 ABCC_MsbA MsbA is an e 98.9 2.1E-08 4.5E-13 85.4 11.4 60 116-176 24-86 (234)
238 PRK10419 nikE nickel transport 98.9 1.8E-08 3.9E-13 87.8 11.0 38 116-153 34-71 (268)
239 PRK13644 cbiO cobalt transport 98.9 1.5E-08 3.3E-13 88.6 10.4 59 116-174 24-85 (274)
240 cd03253 ABCC_ATM1_transporter 98.9 1.7E-08 3.7E-13 86.1 10.5 38 116-153 23-60 (236)
241 PRK13633 cobalt transporter AT 98.9 2.1E-08 4.5E-13 88.0 11.2 58 116-174 32-93 (280)
242 PRK13649 cbiO cobalt transport 98.9 1.3E-08 2.8E-13 89.2 9.9 38 116-153 29-66 (280)
243 COG4618 ArpD ABC-type protease 98.9 2.4E-08 5.3E-13 91.7 11.3 63 117-179 359-423 (580)
244 PRK10762 D-ribose transporter 98.9 1.5E-08 3.2E-13 95.9 10.4 38 116-153 26-63 (501)
245 TIGR02982 heterocyst_DevA ABC 98.9 2E-08 4.3E-13 84.9 10.1 38 117-155 28-65 (220)
246 PF13401 AAA_22: AAA domain; P 98.8 3E-08 6.5E-13 76.4 10.2 114 118-256 2-125 (131)
247 PRK13631 cbiO cobalt transport 98.8 2.1E-08 4.5E-13 89.6 10.4 38 116-153 48-85 (320)
248 cd03252 ABCC_Hemolysin The ABC 98.8 2E-08 4.4E-13 85.7 10.0 38 116-153 24-61 (237)
249 cd03260 ABC_PstB_phosphate_tra 98.8 5.4E-09 1.2E-13 88.6 6.4 69 116-186 22-100 (227)
250 cd03234 ABCG_White The White s 98.8 7.9E-09 1.7E-13 87.7 7.3 72 116-188 29-103 (226)
251 COG1117 PstB ABC-type phosphat 98.8 1.7E-08 3.8E-13 83.4 8.9 64 115-178 28-100 (253)
252 PRK09700 D-allose transporter 98.8 1.8E-08 4E-13 95.5 10.5 38 116-153 27-64 (510)
253 PRK09473 oppD oligopeptide tra 98.8 2.5E-08 5.4E-13 89.5 10.8 38 116-153 38-78 (330)
254 TIGR03269 met_CoM_red_A2 methy 98.8 2.2E-08 4.7E-13 95.2 11.0 38 116-153 22-61 (520)
255 PRK11701 phnK phosphonate C-P 98.8 2.9E-08 6.3E-13 85.9 10.9 39 117-155 29-67 (258)
256 PRK11022 dppD dipeptide transp 98.8 2.8E-08 6.1E-13 89.0 11.0 30 116-145 29-58 (326)
257 PRK13541 cytochrome c biogenes 98.8 1E-08 2.2E-13 85.0 7.6 38 116-153 22-59 (195)
258 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.8 2.5E-08 5.3E-13 85.2 10.0 38 116-153 25-62 (238)
259 PRK10938 putative molybdenum t 98.8 3.2E-08 6.9E-13 93.4 11.7 131 116-264 25-202 (490)
260 TIGR01257 rim_protein retinal- 98.8 1.9E-08 4.1E-13 107.2 11.1 132 116-264 1961-2137(2272)
261 COG4619 ABC-type uncharacteriz 98.8 2.6E-08 5.6E-13 79.5 9.2 125 116-259 25-196 (223)
262 cd03369 ABCC_NFT1 Domain 2 of 98.8 3.3E-08 7.1E-13 82.7 10.5 38 116-153 30-67 (207)
263 PRK10261 glutathione transport 98.8 2.3E-08 5E-13 97.0 10.8 40 116-155 346-385 (623)
264 cd03254 ABCC_Glucan_exporter_l 98.8 2.7E-08 5.8E-13 84.5 9.5 37 116-152 25-61 (229)
265 TIGR03771 anch_rpt_ABC anchore 98.8 8.1E-08 1.8E-12 81.4 12.4 35 117-151 3-37 (223)
266 COG4559 ABC-type hemin transpo 98.8 7.4E-08 1.6E-12 79.7 11.6 60 116-175 23-84 (259)
267 smart00382 AAA ATPases associa 98.8 8.5E-08 1.8E-12 73.4 11.5 92 119-212 1-92 (148)
268 PF13479 AAA_24: AAA domain 98.8 4.1E-08 8.8E-13 82.7 10.3 127 120-260 3-140 (213)
269 cd03223 ABCD_peroxisomal_ALDP 98.8 1.2E-07 2.6E-12 76.7 12.6 113 116-259 23-150 (166)
270 PRK13549 xylose transporter AT 98.8 2.6E-08 5.6E-13 94.4 10.0 38 116-153 27-66 (506)
271 PRK10982 galactose/methyl gala 98.8 2.6E-08 5.7E-13 94.0 9.9 38 116-153 20-57 (491)
272 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.8 6.7E-08 1.5E-12 81.9 11.4 37 116-152 44-80 (224)
273 PRK13409 putative ATPase RIL; 98.8 3.1E-08 6.7E-13 95.3 10.3 131 115-263 360-520 (590)
274 cd03244 ABCC_MRP_domain2 Domai 98.8 4.8E-08 1E-12 82.4 10.4 38 116-153 26-63 (221)
275 PRK11288 araG L-arabinose tran 98.8 3.1E-08 6.8E-13 93.7 10.2 38 116-153 26-63 (501)
276 PRK14258 phosphate ABC transpo 98.8 6E-08 1.3E-12 84.1 11.1 31 116-146 29-59 (261)
277 PRK14247 phosphate ABC transpo 98.8 4E-08 8.7E-13 84.6 9.9 30 116-145 25-54 (250)
278 COG1123 ATPase components of v 98.8 4.4E-08 9.4E-13 91.7 10.5 41 117-157 314-354 (539)
279 PRK14259 phosphate ABC transpo 98.8 5.9E-08 1.3E-12 84.6 10.8 29 116-144 35-63 (269)
280 TIGR01187 potA spermidine/putr 98.8 2.6E-08 5.7E-13 89.1 8.8 60 125-184 1-60 (325)
281 PRK14242 phosphate transporter 98.8 8.2E-08 1.8E-12 82.8 11.5 29 116-144 28-56 (253)
282 cd03236 ABC_RNaseL_inhibitor_d 98.8 6.4E-08 1.4E-12 83.7 10.7 36 117-152 23-58 (255)
283 PRK15056 manganese/iron transp 98.8 1E-07 2.3E-12 83.2 12.0 36 116-151 29-64 (272)
284 TIGR00972 3a0107s01c2 phosphat 98.8 1.1E-08 2.4E-13 88.0 5.7 69 116-185 23-100 (247)
285 PRK05800 cobU adenosylcobinami 98.8 1.9E-08 4.1E-13 81.8 6.6 119 121-256 2-125 (170)
286 PRK15093 antimicrobial peptide 98.8 7.4E-08 1.6E-12 86.4 11.1 29 116-144 29-57 (330)
287 cd03250 ABCC_MRP_domain1 Domai 98.7 8E-08 1.7E-12 80.2 10.2 36 116-151 27-62 (204)
288 PRK14273 phosphate ABC transpo 98.7 1.1E-07 2.3E-12 82.2 11.3 31 116-146 29-59 (254)
289 PRK14240 phosphate transporter 98.7 1E-07 2.2E-12 82.0 11.1 29 116-144 25-53 (250)
290 cd03245 ABCC_bacteriocin_expor 98.7 7.1E-08 1.5E-12 81.4 9.8 38 116-153 26-63 (220)
291 PRK09700 D-allose transporter 98.7 5.7E-08 1.2E-12 92.1 10.2 38 117-154 286-323 (510)
292 COG1123 ATPase components of v 98.7 1.1E-07 2.3E-12 89.1 11.7 133 116-264 31-222 (539)
293 PRK14267 phosphate ABC transpo 98.7 7.8E-08 1.7E-12 82.9 10.2 31 116-146 26-56 (253)
294 TIGR01978 sufC FeS assembly AT 98.7 2.1E-08 4.5E-13 85.8 6.6 72 116-188 22-99 (243)
295 PRK11288 araG L-arabinose tran 98.7 6.2E-08 1.4E-12 91.7 10.4 37 117-153 276-312 (501)
296 PRK10261 glutathione transport 98.7 2.9E-08 6.3E-13 96.3 8.2 38 116-153 38-75 (623)
297 PRK10762 D-ribose transporter 98.7 7.2E-08 1.6E-12 91.3 10.5 38 116-153 274-311 (501)
298 COG4175 ProV ABC-type proline/ 98.7 3.6E-08 7.8E-13 85.9 7.6 129 116-260 50-228 (386)
299 PRK14249 phosphate ABC transpo 98.7 1.2E-07 2.7E-12 81.6 11.1 30 117-146 27-56 (251)
300 COG4107 PhnK ABC-type phosphon 98.7 2.6E-07 5.5E-12 74.4 11.8 43 117-159 29-71 (258)
301 TIGR02323 CP_lyasePhnK phospho 98.7 1.5E-07 3.3E-12 81.1 11.5 38 116-153 25-62 (253)
302 PRK14253 phosphate ABC transpo 98.7 1.9E-07 4.1E-12 80.3 12.1 30 116-145 25-54 (249)
303 PRK14248 phosphate ABC transpo 98.7 1.4E-07 2.9E-12 82.2 11.2 29 116-144 43-71 (268)
304 PRK10744 pstB phosphate transp 98.7 1.4E-07 3E-12 81.8 11.2 30 116-145 35-64 (260)
305 COG1134 TagH ABC-type polysacc 98.7 1.4E-07 3E-12 79.7 10.6 132 116-264 49-214 (249)
306 PRK14274 phosphate ABC transpo 98.7 1.8E-07 3.8E-12 81.0 11.7 29 117-145 35-63 (259)
307 PRK14269 phosphate ABC transpo 98.7 1.6E-07 3.5E-12 80.7 11.3 61 116-177 24-90 (246)
308 PRK14270 phosphate ABC transpo 98.7 1.8E-07 4E-12 80.5 11.7 62 116-178 26-97 (251)
309 cd03290 ABCC_SUR1_N The SUR do 98.7 1.5E-07 3.1E-12 79.4 10.6 38 116-153 23-60 (218)
310 COG2274 SunT ABC-type bacterio 98.7 5.8E-08 1.3E-12 94.7 9.2 61 116-176 495-557 (709)
311 PRK13549 xylose transporter AT 98.7 1E-07 2.2E-12 90.4 10.6 39 116-154 284-323 (506)
312 PRK14268 phosphate ABC transpo 98.7 1.1E-07 2.3E-12 82.4 9.9 68 116-185 34-111 (258)
313 PRK14238 phosphate transporter 98.7 2E-07 4.3E-12 81.4 11.6 30 116-145 46-75 (271)
314 TIGR03269 met_CoM_red_A2 methy 98.7 9.3E-08 2E-12 90.9 10.3 71 117-187 307-386 (520)
315 PRK14262 phosphate ABC transpo 98.7 1.7E-07 3.7E-12 80.7 11.0 30 116-145 25-54 (250)
316 PRK14239 phosphate transporter 98.7 1.9E-07 4E-12 80.5 11.1 28 116-143 27-54 (252)
317 PRK13546 teichoic acids export 98.7 3.8E-07 8.3E-12 79.3 12.9 37 116-152 46-82 (264)
318 PRK14272 phosphate ABC transpo 98.7 1.9E-07 4.2E-12 80.4 10.9 30 116-145 26-55 (252)
319 PRK14254 phosphate ABC transpo 98.7 1.6E-07 3.6E-12 82.5 10.6 30 116-145 61-90 (285)
320 cd03248 ABCC_TAP TAP, the Tran 98.7 2.3E-07 5E-12 78.6 11.1 38 116-153 36-73 (226)
321 PRK14246 phosphate ABC transpo 98.7 2.3E-07 4.9E-12 80.4 11.2 33 116-148 32-64 (257)
322 TIGR01257 rim_protein retinal- 98.7 9.8E-08 2.1E-12 101.9 10.6 72 116-187 952-1024(2272)
323 PRK14265 phosphate ABC transpo 98.7 2.1E-07 4.7E-12 81.3 11.1 28 117-144 43-70 (274)
324 PRK14245 phosphate ABC transpo 98.7 3.9E-07 8.4E-12 78.5 12.5 28 116-143 25-52 (250)
325 cd03283 ABC_MutS-like MutS-lik 98.7 3E-07 6.5E-12 76.6 11.4 28 117-144 22-49 (199)
326 TIGR01618 phage_P_loop phage n 98.7 2E-07 4.4E-12 78.6 10.4 129 116-258 7-144 (220)
327 cd03289 ABCC_CFTR2 The CFTR su 98.7 2.1E-07 4.5E-12 81.4 10.9 59 116-176 26-87 (275)
328 PRK14236 phosphate transporter 98.7 2.3E-07 5.1E-12 80.9 11.2 30 116-145 47-76 (272)
329 PRK14251 phosphate ABC transpo 98.7 2.3E-07 5.1E-12 79.9 11.0 30 116-145 26-55 (251)
330 PRK14260 phosphate ABC transpo 98.7 3.7E-07 8E-12 79.1 12.2 30 116-145 29-58 (259)
331 PRK14243 phosphate transporter 98.7 3.4E-07 7.3E-12 79.6 12.0 29 116-144 32-60 (264)
332 PRK14235 phosphate transporter 98.7 1.8E-07 3.8E-12 81.5 10.1 62 116-178 41-112 (267)
333 COG0444 DppD ABC-type dipeptid 98.7 1.4E-08 3.1E-13 88.8 3.2 30 116-145 27-56 (316)
334 PRK14237 phosphate transporter 98.7 3E-07 6.5E-12 80.0 11.4 30 116-145 42-71 (267)
335 PRK14244 phosphate ABC transpo 98.6 3.1E-07 6.7E-12 79.1 11.4 30 116-145 27-56 (251)
336 PRK15134 microcin C ABC transp 98.6 1.8E-07 3.8E-12 89.2 10.7 37 116-153 308-344 (529)
337 TIGR02868 CydC thiol reductant 98.6 1.2E-07 2.7E-12 90.2 9.6 62 116-178 357-420 (529)
338 PRK14241 phosphate transporter 98.6 1.7E-07 3.8E-12 81.1 9.7 30 116-145 26-55 (258)
339 PRK11176 lipid transporter ATP 98.6 2.2E-07 4.8E-12 89.5 11.4 63 116-178 365-429 (582)
340 COG4133 CcmA ABC-type transpor 98.6 2E-07 4.4E-12 75.7 9.2 39 117-155 25-63 (209)
341 PRK14271 phosphate ABC transpo 98.6 3.1E-07 6.6E-12 80.4 11.2 30 116-145 43-72 (276)
342 PRK14266 phosphate ABC transpo 98.6 3.9E-07 8.5E-12 78.4 11.8 29 116-144 25-53 (250)
343 PF01695 IstB_IS21: IstB-like 98.6 2.2E-07 4.9E-12 76.0 9.7 115 116-263 43-157 (178)
344 PRK14275 phosphate ABC transpo 98.6 3.1E-07 6.7E-12 80.8 11.1 29 116-144 61-89 (286)
345 PRK11174 cysteine/glutathione 98.6 1.9E-07 4.2E-12 90.0 10.6 59 117-177 373-434 (588)
346 PF00004 AAA: ATPase family as 98.6 2.6E-07 5.7E-12 70.9 9.4 115 123-261 1-116 (132)
347 PRK09580 sufC cysteine desulfu 98.6 2.8E-07 6E-12 79.2 10.5 40 116-156 23-64 (248)
348 PRK09183 transposase/IS protei 98.6 7.1E-07 1.5E-11 77.4 13.0 42 116-157 98-139 (259)
349 PRK14261 phosphate ABC transpo 98.6 2.8E-07 6.1E-12 79.5 10.4 28 116-143 28-55 (253)
350 PRK14263 phosphate ABC transpo 98.6 2.3E-07 4.9E-12 80.6 9.8 30 116-145 30-59 (261)
351 PRK13545 tagH teichoic acids e 98.6 3.3E-07 7.2E-12 86.1 11.4 37 116-152 46-82 (549)
352 COG0488 Uup ATPase components 98.6 3.8E-07 8.3E-12 86.3 11.8 46 116-161 25-78 (530)
353 PRK14256 phosphate ABC transpo 98.6 2.1E-07 4.6E-12 80.2 9.3 29 116-144 26-54 (252)
354 PRK14252 phosphate ABC transpo 98.6 4.6E-07 9.9E-12 78.8 11.4 29 117-145 39-67 (265)
355 TIGR02633 xylG D-xylose ABC tr 98.6 1.5E-07 3.2E-12 89.1 9.0 38 116-153 23-62 (500)
356 PRK14264 phosphate ABC transpo 98.6 3.7E-07 8E-12 81.0 10.9 29 116-144 67-95 (305)
357 PRK08084 DNA replication initi 98.6 5.9E-07 1.3E-11 76.8 11.8 76 76-158 8-83 (235)
358 PRK08181 transposase; Validate 98.6 6.7E-07 1.5E-11 77.8 12.2 78 117-211 103-180 (269)
359 PRK06893 DNA replication initi 98.6 5.3E-07 1.1E-11 76.8 11.3 37 121-157 40-76 (229)
360 PRK13409 putative ATPase RIL; 98.6 1.9E-07 4.2E-12 89.9 9.5 36 117-152 96-131 (590)
361 PRK15439 autoinducer 2 ABC tra 98.6 4.7E-08 1E-12 92.7 5.0 39 116-154 285-323 (510)
362 cd03288 ABCC_SUR2 The SUR doma 98.6 5.9E-07 1.3E-11 77.7 11.4 38 116-153 43-80 (257)
363 COG4674 Uncharacterized ABC-ty 98.6 1.6E-07 3.4E-12 76.9 7.1 76 104-181 17-96 (249)
364 PF00448 SRP54: SRP54-type pro 98.6 9.5E-07 2.1E-11 73.4 12.1 88 121-211 2-96 (196)
365 TIGR01842 type_I_sec_PrtD type 98.6 3.7E-07 8.1E-12 87.3 11.1 62 116-177 340-403 (544)
366 COG0488 Uup ATPase components 98.6 6.7E-07 1.4E-11 84.7 12.4 129 116-264 344-503 (530)
367 PRK15134 microcin C ABC transp 98.6 7.7E-08 1.7E-12 91.7 6.3 30 116-145 31-60 (529)
368 TIGR02857 CydD thiol reductant 98.6 3E-07 6.6E-12 87.5 10.3 63 116-178 344-408 (529)
369 PRK06526 transposase; Provisio 98.6 2.7E-07 5.7E-12 79.8 8.7 41 116-156 94-134 (254)
370 cd00009 AAA The AAA+ (ATPases 98.6 7.6E-07 1.6E-11 68.7 10.6 79 119-211 18-97 (151)
371 PRK10938 putative molybdenum t 98.6 4.5E-07 9.8E-12 85.6 10.9 38 117-154 283-321 (490)
372 PRK14255 phosphate ABC transpo 98.6 6.4E-07 1.4E-11 77.2 10.8 29 116-144 27-55 (252)
373 CHL00131 ycf16 sulfate ABC tra 98.6 4.6E-07 1E-11 78.0 9.9 38 116-153 29-68 (252)
374 PRK13657 cyclic beta-1,2-gluca 98.6 3.7E-07 8E-12 88.1 10.3 59 117-176 358-419 (588)
375 PRK15064 ABC transporter ATP-b 98.6 3.3E-07 7.3E-12 87.3 9.7 36 116-151 23-58 (530)
376 TIGR02633 xylG D-xylose ABC tr 98.6 1.6E-07 3.5E-12 88.8 7.6 37 117-153 283-320 (500)
377 PRK10789 putative multidrug tr 98.5 4.5E-07 9.9E-12 87.2 10.6 63 116-178 337-401 (569)
378 TIGR03499 FlhF flagellar biosy 98.5 6.2E-07 1.3E-11 78.7 10.5 82 118-207 192-281 (282)
379 PRK10790 putative multidrug tr 98.5 4.5E-07 9.8E-12 87.5 10.4 63 116-178 363-427 (592)
380 PLN03211 ABC transporter G-25; 98.5 3.6E-07 7.7E-12 89.1 9.6 72 115-188 89-162 (659)
381 TIGR02204 MsbA_rel ABC transpo 98.5 5.9E-07 1.3E-11 86.4 10.9 61 117-177 363-425 (576)
382 TIGR03375 type_I_sec_LssB type 98.5 3.5E-07 7.5E-12 90.0 9.4 60 117-176 488-549 (694)
383 TIGR01193 bacteriocin_ABC ABC- 98.5 3.3E-07 7.2E-12 90.3 9.0 61 116-177 496-559 (708)
384 cd03243 ABC_MutS_homologs The 98.5 6.2E-07 1.4E-11 74.8 9.3 26 119-144 28-53 (202)
385 PRK05642 DNA replication initi 98.5 1.7E-06 3.6E-11 73.9 12.1 134 76-256 5-139 (234)
386 PRK10982 galactose/methyl gala 98.5 1E-06 2.2E-11 83.2 11.8 37 117-153 271-307 (491)
387 KOG0058 Peptide exporter, ABC 98.5 8.3E-07 1.8E-11 84.9 11.0 60 116-175 490-551 (716)
388 COG4172 ABC-type uncharacteriz 98.5 9.7E-07 2.1E-11 79.5 10.8 128 117-264 310-494 (534)
389 TIGR01192 chvA glucan exporter 98.5 5.7E-07 1.2E-11 86.8 10.2 61 116-177 357-420 (585)
390 PRK12726 flagellar biosynthesi 98.5 8.8E-07 1.9E-11 80.0 10.6 90 117-211 203-298 (407)
391 TIGR03797 NHPM_micro_ABC2 NHPM 98.5 3.3E-07 7.1E-12 90.0 8.6 63 116-178 475-539 (686)
392 TIGR03796 NHPM_micro_ABC1 NHPM 98.5 2.5E-07 5.3E-12 91.2 7.6 63 116-178 501-565 (710)
393 COG4136 ABC-type uncharacteriz 98.5 7E-07 1.5E-11 70.2 8.5 60 116-175 24-86 (213)
394 PRK15177 Vi polysaccharide exp 98.5 1.4E-06 3E-11 73.4 11.1 37 116-152 9-45 (213)
395 PRK10636 putative ABC transpor 98.5 1.4E-06 2.9E-11 84.9 12.5 36 116-151 23-58 (638)
396 TIGR01846 type_I_sec_HlyB type 98.5 7.4E-07 1.6E-11 87.7 10.7 62 116-177 479-542 (694)
397 PTZ00265 multidrug resistance 98.5 1.1E-06 2.5E-11 92.4 12.6 71 116-187 407-480 (1466)
398 PRK10636 putative ABC transpor 98.5 1.2E-06 2.7E-11 85.2 11.8 34 116-149 334-367 (638)
399 PRK08727 hypothetical protein; 98.5 2.3E-06 5E-11 73.1 12.2 131 76-256 5-135 (233)
400 PRK12724 flagellar biosynthesi 98.5 2.6E-06 5.6E-11 78.0 13.1 84 116-208 219-309 (432)
401 PRK08903 DnaA regulatory inact 98.5 1.7E-06 3.6E-11 73.4 11.3 76 76-157 4-79 (227)
402 cd03115 SRP The signal recogni 98.5 4.7E-06 1E-10 67.6 13.4 87 122-210 2-94 (173)
403 TIGR02203 MsbA_lipidA lipid A 98.5 9E-07 1.9E-11 85.0 10.6 60 117-176 355-416 (571)
404 PRK10416 signal recognition pa 98.5 5.6E-06 1.2E-10 73.9 14.9 92 118-211 112-209 (318)
405 COG4148 ModC ABC-type molybdat 98.5 8.6E-08 1.9E-12 82.3 3.1 138 104-262 11-194 (352)
406 TIGR03719 ABC_ABC_ChvD ATP-bin 98.5 3.6E-07 7.7E-12 87.6 7.6 36 116-151 27-62 (552)
407 PTZ00454 26S protease regulato 98.5 1.2E-06 2.5E-11 80.5 10.6 126 115-262 174-299 (398)
408 PRK10535 macrolide transporter 98.5 1E-06 2.2E-11 86.0 10.7 63 117-180 31-100 (648)
409 COG4988 CydD ABC-type transpor 98.5 1.2E-06 2.7E-11 82.0 10.6 63 116-178 343-407 (559)
410 COG0396 sufC Cysteine desulfur 98.5 7.6E-07 1.6E-11 74.5 8.2 27 117-143 27-53 (251)
411 cd03227 ABC_Class2 ABC-type Cl 98.5 2.3E-06 5.1E-11 68.8 10.9 116 119-260 20-144 (162)
412 PRK11147 ABC transporter ATPas 98.5 1.8E-07 4E-12 91.0 5.2 36 116-151 341-376 (635)
413 PRK11819 putative ABC transpor 98.4 2.2E-07 4.9E-12 89.0 5.6 36 117-152 347-382 (556)
414 PRK14257 phosphate ABC transpo 98.4 1.5E-06 3.1E-11 78.1 10.3 30 116-145 104-133 (329)
415 TIGR00955 3a01204 The Eye Pigm 98.4 2.6E-07 5.7E-12 89.6 6.0 74 115-188 46-121 (617)
416 PRK12377 putative replication 98.4 1.8E-06 3.9E-11 74.3 10.4 75 121-211 102-176 (248)
417 PTZ00361 26 proteosome regulat 98.4 1.8E-06 4E-11 79.9 11.2 125 116-262 213-337 (438)
418 PLN03073 ABC transporter F fam 98.4 1.7E-06 3.8E-11 85.0 11.6 41 117-157 200-243 (718)
419 PRK15064 ABC transporter ATP-b 98.4 2.6E-07 5.6E-12 88.1 5.5 35 117-151 342-376 (530)
420 TIGR00064 ftsY signal recognit 98.4 8.4E-06 1.8E-10 71.2 14.5 91 118-211 70-167 (272)
421 PRK11819 putative ABC transpor 98.4 2.5E-06 5.4E-11 81.9 12.1 35 116-150 29-63 (556)
422 TIGR00958 3a01208 Conjugate Tr 98.4 7.9E-07 1.7E-11 87.7 8.9 63 116-179 503-568 (711)
423 PRK10522 multidrug transporter 98.4 1.1E-06 2.4E-11 84.1 9.7 60 116-175 345-406 (547)
424 COG4161 ArtP ABC-type arginine 98.4 6.5E-06 1.4E-10 65.6 12.2 66 116-181 24-97 (242)
425 PRK10867 signal recognition pa 98.4 5.4E-06 1.2E-10 76.7 13.7 90 120-211 100-196 (433)
426 PF00308 Bac_DnaA: Bacterial d 98.4 1.2E-05 2.6E-10 68.0 14.7 104 120-256 34-139 (219)
427 KOG0061 Transporter, ABC super 98.4 1.4E-06 3E-11 84.3 10.1 68 115-182 51-120 (613)
428 COG1245 Predicted ATPase, RNas 98.4 2.2E-06 4.8E-11 78.2 10.6 127 115-257 362-516 (591)
429 PRK11160 cysteine/glutathione 98.4 1.1E-06 2.5E-11 84.5 9.4 62 116-178 362-426 (574)
430 PRK11889 flhF flagellar biosyn 98.4 2.3E-06 5E-11 77.6 10.6 87 120-211 241-333 (436)
431 PRK11147 ABC transporter ATPas 98.4 1.1E-06 2.3E-11 85.7 9.1 37 116-152 25-61 (635)
432 PF05621 TniB: Bacterial TniB 98.4 8.9E-06 1.9E-10 71.2 13.8 131 105-254 46-187 (302)
433 PRK06921 hypothetical protein; 98.4 2.9E-06 6.2E-11 73.9 10.8 38 119-156 116-154 (266)
434 TIGR03719 ABC_ABC_ChvD ATP-bin 98.4 3.2E-07 7E-12 87.9 5.3 36 116-151 344-379 (552)
435 COG1222 RPT1 ATP-dependent 26S 98.4 1.1E-06 2.4E-11 77.9 8.1 122 116-259 181-302 (406)
436 PRK14722 flhF flagellar biosyn 98.4 1.7E-06 3.7E-11 78.4 9.6 87 116-210 133-227 (374)
437 COG1119 ModF ABC-type molybden 98.4 4E-06 8.7E-11 70.9 11.1 57 115-171 52-111 (257)
438 COG1618 Predicted nucleotide k 98.4 2.2E-06 4.7E-11 68.0 8.8 32 122-153 7-38 (179)
439 cd03280 ABC_MutS2 MutS2 homolo 98.4 2.2E-06 4.8E-11 71.4 9.4 25 118-142 25-50 (200)
440 PRK05703 flhF flagellar biosyn 98.4 1.9E-06 4E-11 79.8 9.8 84 118-209 219-310 (424)
441 PF13173 AAA_14: AAA domain 98.4 3.5E-06 7.7E-11 65.0 9.8 100 120-260 2-102 (128)
442 TIGR01194 cyc_pep_trnsptr cycl 98.4 1.3E-06 2.8E-11 83.8 8.9 59 116-175 364-425 (555)
443 TIGR00959 ffh signal recogniti 98.4 9.3E-06 2E-10 75.1 14.0 90 120-211 99-195 (428)
444 KOG0059 Lipid exporter ABCA1 a 98.4 2.3E-06 4.9E-11 86.2 10.7 133 115-264 586-765 (885)
445 COG4987 CydC ABC-type transpor 98.4 9.2E-07 2E-11 82.0 7.3 62 116-177 360-423 (573)
446 TIGR02858 spore_III_AA stage I 98.4 2.2E-06 4.8E-11 74.6 9.2 114 121-258 112-230 (270)
447 PRK14974 cell division protein 98.4 1.1E-05 2.5E-10 72.3 13.9 90 119-211 139-235 (336)
448 COG1132 MdlB ABC-type multidru 98.4 2.9E-06 6.3E-11 81.6 10.8 63 116-179 351-416 (567)
449 PRK06835 DNA replication prote 98.4 8.3E-06 1.8E-10 73.0 13.0 77 120-211 183-259 (329)
450 KOG0734 AAA+-type ATPase conta 98.4 2.2E-06 4.8E-11 79.5 9.4 123 112-262 332-454 (752)
451 PLN03073 ABC transporter F fam 98.4 4.9E-06 1.1E-10 81.9 12.4 35 116-150 531-565 (718)
452 TIGR03420 DnaA_homol_Hda DnaA 98.4 5.2E-06 1.1E-10 70.0 11.1 50 105-157 26-75 (226)
453 PLN03140 ABC transporter G fam 98.3 1.5E-06 3.3E-11 91.2 8.9 39 115-153 186-227 (1470)
454 cd03272 ABC_SMC3_euk Eukaryoti 98.3 4.3E-06 9.2E-11 71.6 10.2 23 120-142 23-45 (243)
455 COG4598 HisP ABC-type histidin 98.3 4.2E-07 9.1E-12 73.5 3.4 64 117-181 29-108 (256)
456 PLN03232 ABC transporter C fam 98.3 2.9E-06 6.4E-11 89.7 10.5 63 116-179 1258-1323(1495)
457 PTZ00265 multidrug resistance 98.3 3.6E-06 7.7E-11 88.7 11.0 31 116-146 1190-1220(1466)
458 cd03278 ABC_SMC_barmotin Barmo 98.3 1.8E-05 3.8E-10 65.8 13.0 27 117-144 20-46 (197)
459 PLN03140 ABC transporter G fam 98.3 3.4E-06 7.5E-11 88.7 10.6 72 115-187 901-974 (1470)
460 TIGR01425 SRP54_euk signal rec 98.3 1.3E-05 2.9E-10 73.9 13.2 89 120-211 100-195 (429)
461 PRK03992 proteasome-activating 98.3 4.8E-06 1E-10 76.4 10.3 124 116-261 161-284 (389)
462 TIGR03689 pup_AAA proteasome A 98.3 3.9E-06 8.5E-11 79.0 9.7 132 115-261 211-347 (512)
463 cd03281 ABC_MSH5_euk MutS5 hom 98.3 7.1E-06 1.5E-10 69.1 10.4 25 120-144 29-53 (213)
464 COG4615 PvdE ABC-type sideroph 98.3 3.8E-06 8.3E-11 75.5 9.1 39 117-155 346-384 (546)
465 PLN03130 ABC transporter C fam 98.3 3.6E-06 7.9E-11 89.5 10.3 61 116-177 1261-1324(1622)
466 PRK08116 hypothetical protein; 98.3 7.7E-06 1.7E-10 71.3 10.6 38 120-157 114-151 (268)
467 cd03291 ABCC_CFTR1 The CFTR su 98.3 9.5E-06 2.1E-10 71.3 11.3 35 116-150 59-93 (282)
468 cd03285 ABC_MSH2_euk MutS2 hom 98.3 5.3E-06 1.1E-10 70.3 9.3 28 117-144 27-54 (222)
469 COG4525 TauB ABC-type taurine 98.3 1.9E-06 4.1E-11 70.7 5.9 31 116-146 27-57 (259)
470 cd03271 ABC_UvrA_II The excisi 98.3 2.4E-05 5.3E-10 67.8 13.2 27 116-142 17-43 (261)
471 PRK00771 signal recognition pa 98.2 4.5E-05 9.7E-10 70.8 15.5 99 106-211 76-188 (437)
472 KOG0744 AAA+-type ATPase [Post 98.2 5.6E-06 1.2E-10 72.6 8.9 133 119-263 176-313 (423)
473 PTZ00243 ABC transporter; Prov 98.2 5.2E-06 1.1E-10 88.1 10.5 62 117-178 1333-1396(1560)
474 COG1101 PhnK ABC-type uncharac 98.2 1.1E-05 2.4E-10 67.1 10.2 43 116-158 28-70 (263)
475 TIGR01242 26Sp45 26S proteasom 98.2 4.1E-06 8.9E-11 76.2 8.5 124 116-261 152-275 (364)
476 cd03270 ABC_UvrA_I The excisio 98.2 1.4E-05 3.1E-10 67.9 11.2 23 116-138 17-39 (226)
477 TIGR00957 MRP_assoc_pro multi 98.2 5.8E-06 1.3E-10 87.7 10.7 61 117-178 1309-1372(1522)
478 COG1484 DnaC DNA replication p 98.2 9E-06 2E-10 70.3 9.9 42 116-157 101-142 (254)
479 cd01128 rho_factor Transcripti 98.2 4.3E-06 9.3E-11 72.0 7.7 100 106-211 5-116 (249)
480 COG4167 SapF ABC-type antimicr 98.2 1.5E-05 3.2E-10 64.9 10.2 43 116-158 35-77 (267)
481 cd03279 ABC_sbcCD SbcCD and ot 98.2 4E-06 8.7E-11 70.5 7.3 26 117-142 25-50 (213)
482 PRK12723 flagellar biosynthesi 98.2 2.2E-05 4.8E-10 71.7 12.5 85 119-211 173-267 (388)
483 COG4778 PhnL ABC-type phosphon 98.2 1.1E-05 2.5E-10 64.7 9.3 62 116-177 33-104 (235)
484 TIGR00956 3a01205 Pleiotropic 98.2 4.2E-06 9.2E-11 87.9 8.9 58 115-174 784-844 (1394)
485 smart00534 MUTSac ATPase domai 98.2 5.3E-06 1.1E-10 68.2 7.7 22 123-144 2-23 (185)
486 PRK07952 DNA replication prote 98.2 1.4E-05 3E-10 68.6 10.4 76 121-211 100-175 (244)
487 KOG0733 Nuclear AAA ATPase (VC 98.2 8E-06 1.7E-10 76.9 9.4 119 116-260 541-660 (802)
488 PRK12727 flagellar biosynthesi 98.2 1.3E-05 2.9E-10 75.3 10.8 87 116-210 346-440 (559)
489 KOG0733 Nuclear AAA ATPase (VC 98.2 8.4E-06 1.8E-10 76.7 9.4 118 115-257 218-337 (802)
490 cd03240 ABC_Rad50 The catalyti 98.2 5.1E-06 1.1E-10 69.5 7.1 48 197-260 138-186 (204)
491 TIGR00750 lao LAO/AO transport 98.2 2.4E-05 5.2E-10 69.3 11.7 45 116-160 30-74 (300)
492 TIGR01271 CFTR_protein cystic 98.2 1.1E-05 2.5E-10 85.3 11.3 60 117-178 1242-1304(1490)
493 KOG0057 Mitochondrial Fe/S clu 98.2 1.7E-05 3.6E-10 74.0 10.9 60 116-177 374-436 (591)
494 PRK07721 fliI flagellum-specif 98.2 1.1E-05 2.4E-10 74.8 9.8 157 96-258 137-317 (438)
495 KOG0055 Multidrug/pheromone ex 98.2 1.7E-05 3.8E-10 80.3 11.7 58 117-175 376-436 (1228)
496 CHL00195 ycf46 Ycf46; Provisio 98.2 2.7E-05 6E-10 73.2 12.4 120 116-261 255-374 (489)
497 KOG0730 AAA+-type ATPase [Post 98.2 4.9E-06 1.1E-10 78.8 7.4 121 115-260 463-583 (693)
498 PRK06731 flhF flagellar biosyn 98.2 1.9E-05 4E-10 68.8 10.5 88 119-211 74-167 (270)
499 TIGR00954 3a01203 Peroxysomal 98.2 1E-05 2.2E-10 79.2 9.8 35 116-150 474-508 (659)
500 COG1419 FlhF Flagellar GTP-bin 98.2 1.2E-05 2.7E-10 72.8 9.4 86 118-211 201-294 (407)
No 1
>PRK09354 recA recombinase A; Provisional
Probab=100.00 E-value=1.9e-34 Score=255.84 Aligned_cols=197 Identities=53% Similarity=0.795 Sum_probs=182.4
Q ss_pred hHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHH
Q 024705 64 MQKDNALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 64 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~ 143 (264)
+++...|+.++.+++++||++..+++.+... ...+.+|||++.||.+||+||+++|++++|+||+|+|||||+++++.+
T Consensus 5 ~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~-~~~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~ 83 (349)
T PRK09354 5 EEKQKALEAALKQIEKQFGKGSIMRLGDDAA-MDVEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAE 83 (349)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCceEcccccc-cCCceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3678899999999999999999999886443 378899999999999998899999999999999999999999999999
Q ss_pred HhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCC
Q 024705 144 AQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGM 223 (264)
Q Consensus 144 ~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~ 223 (264)
++..|++|+||++|+..++.+++.+|++.+++.+.++.+.++.++.+..++++..+++|||||+.++.++.+++++.++.
T Consensus 84 ~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~~lIVIDSvaaL~~~~E~eg~~gd~ 163 (349)
T PRK09354 84 AQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAVDLIVVDSVAALVPKAEIEGEMGDS 163 (349)
T ss_pred HHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCCCEEEEeChhhhcchhhhcCCcccc
Confidence 99999999999999999999999999999999999999999999999999988999999999999999878888887776
Q ss_pred CcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhh
Q 024705 224 YSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLL 261 (264)
Q Consensus 224 ~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~ 261 (264)
..+.|++.+++.|++|...++++|+++|++||++.++.
T Consensus 164 ~~~~qar~ms~~Lr~L~~~l~k~~itvI~tNQvr~~ig 201 (349)
T PRK09354 164 HVGLQARLMSQALRKLTGNISKSNTTVIFINQIREKIG 201 (349)
T ss_pred chhHHHHHHHHHHHHHHHHHHHcCcEEEEEEeeeeccc
Confidence 77788998999999999999999999999999998764
No 2
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=100.00 E-value=3.5e-34 Score=252.50 Aligned_cols=196 Identities=54% Similarity=0.808 Sum_probs=180.6
Q ss_pred HHHHHHHHHHHHHHhcCCccccccccccCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHh
Q 024705 66 KDNALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 66 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
+...|+.++.++++.||++..+++.+. .....+.+|||++.||.+||+||+|+|.+++|+||||+|||||+++++.+++
T Consensus 2 ~~~~~~~~~~~i~~~~g~~~~~~~~~~-~~~~~~~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~ 80 (325)
T cd00983 2 KQKALELALKQIEKKFGKGSIMKLGDD-AVQDVEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQ 80 (325)
T ss_pred chHHHHHHHHHHHHHhCCcceEECccc-cccCCceecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999988764 3457889999999999999889999999999999999999999999999999
Q ss_pred hcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCc
Q 024705 146 KLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYS 225 (264)
Q Consensus 146 ~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~ 225 (264)
..|++|+|+++|+..++.+++.+|++.+++.+.++.+.++.++.+..++++..+++|||||+.++.++.+++++.++...
T Consensus 81 ~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~~lIVIDSvaal~~~~E~~~~~~~~~~ 160 (325)
T cd00983 81 KLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAVDLIVVDSVAALVPKAEIEGEMGDSHV 160 (325)
T ss_pred HcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCCCEEEEcchHhhcccccccccccccch
Confidence 99999999999999999999999999999999999999999999999988899999999999999987788887777777
Q ss_pred HHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhh
Q 024705 226 DAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLK 262 (264)
Q Consensus 226 ~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~ 262 (264)
+.|++.+++.|++|...++++|+++|++||++.++..
T Consensus 161 ~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQvr~~ig~ 197 (325)
T cd00983 161 GLQARLMSQALRKLTGSINKSNTTVIFINQLREKIGV 197 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEEEcccccccc
Confidence 7888989999999999999999999999999987753
No 3
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=100.00 E-value=7e-34 Score=250.42 Aligned_cols=195 Identities=52% Similarity=0.799 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHHHHhcCCccccccccccCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHh
Q 024705 66 KDNALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 66 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
+.+.|+.++.+++++||++..+++... .....+.+|||++.||.+||+||+++|++++|+||||+|||||+++++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~ 80 (321)
T TIGR02012 2 KQKALEAALAQIEKQFGKGSIMRLGEK-SVMDVETISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQ 80 (321)
T ss_pred hHHHHHHHHHHHHHHcCcceeEECccc-ccccCceecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999888753 2457889999999999999878999999999999999999999999999999
Q ss_pred hcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCc
Q 024705 146 KLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYS 225 (264)
Q Consensus 146 ~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~ 225 (264)
..|++|+||++|+..++.+++++|++.+++.+.++.+.++.++.+..++++..+++|||||++++.++.+++++.++...
T Consensus 81 ~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~~~~lIVIDSv~al~~~~E~e~~~g~~~~ 160 (321)
T TIGR02012 81 KAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSGAVDIIVVDSVAALVPKAEIEGEMGDSHV 160 (321)
T ss_pred HcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhccCCcEEEEcchhhhccchhhcccccccch
Confidence 99999999999999999999999999999999999999999999998888889999999999999987788887777667
Q ss_pred HHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhh
Q 024705 226 DAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLL 261 (264)
Q Consensus 226 ~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~ 261 (264)
+.++|.+++.|++|...++++|+++|++||++.++.
T Consensus 161 ~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQvr~~~g 196 (321)
T TIGR02012 161 GLQARLMSQALRKLTGALSKSNTTAIFINQIREKIG 196 (321)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeccC
Confidence 788888889999999999999999999999988754
No 4
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=100.00 E-value=4.5e-33 Score=244.63 Aligned_cols=196 Identities=53% Similarity=0.781 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHHhcCCccccccccccCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhc
Q 024705 68 NALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL 147 (264)
Q Consensus 68 ~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~ 147 (264)
+.|+.++++++++||++..+++.+.......+.+|||++.||.+||.||+|+|.+++|+||+++|||||++.++.++++.
T Consensus 1 ~~l~~~~~~i~k~~g~~~i~~lg~~~~~~~~~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~ 80 (322)
T PF00154_consen 1 KALEKALKQIEKKFGKGSIMRLGDNAESQNIEVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQ 80 (322)
T ss_dssp HHHHHHHHHHHHHHTTTSSEETTS-C-GCSS-EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHhCCCceeecCCcccccccceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcc
Confidence 36888999999999999999887655456789999999999999988999999999999999999999999999999999
Q ss_pred CCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHH
Q 024705 148 GGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDA 227 (264)
Q Consensus 148 g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~ 227 (264)
++.|+|++.|....+.+++.+|++++++.+.+|++.++.++.++.+++++.+++|||||+.++.|+.+++++.++...+.
T Consensus 81 g~~~a~ID~e~~ld~~~a~~lGvdl~rllv~~P~~~E~al~~~e~lirsg~~~lVVvDSv~al~p~~E~e~~~~~~~~g~ 160 (322)
T PF00154_consen 81 GGICAFIDAEHALDPEYAESLGVDLDRLLVVQPDTGEQALWIAEQLIRSGAVDLVVVDSVAALVPKAELEGEIGDQQVGL 160 (322)
T ss_dssp T-EEEEEESSS---HHHHHHTT--GGGEEEEE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT-B-HHHHTTSTSSTSSSH
T ss_pred cceeEEecCcccchhhHHHhcCccccceEEecCCcHHHHHHHHHHHhhcccccEEEEecCcccCCHHHHhhccccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888899
Q ss_pred HHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 228 QSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 228 q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
++|.+++.++++...+.+.|+++|+|||+++++...
T Consensus 161 ~Ar~ms~~lr~lt~~l~~~~~~~i~INQ~R~~ig~~ 196 (322)
T PF00154_consen 161 QARLMSQALRKLTPLLSKSNTTLIFINQVRDKIGVM 196 (322)
T ss_dssp HHHHHHHHHHHHHHHHHTTT-EEEEEEEESSSSSSS
T ss_pred hHHHHHHHHHHHHHHHHhhceEEEEeehHHHHHhhc
Confidence 999999999999999999999999999999988654
No 5
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=99.97 E-value=6.7e-30 Score=245.72 Aligned_cols=197 Identities=45% Similarity=0.751 Sum_probs=179.1
Q ss_pred HHHHHHHHHHHHHHHhcCCccccccccccCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 65 QKDNALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 65 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
++.+.|..++.++++.||++..+.+.+.. ......++||+++||.+||+||+++|++++|+||+|+|||||+++++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~v~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a 84 (790)
T PRK09519 6 DREKALELAVAQIEKSYGKGSVMRLGDEA-RQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANA 84 (790)
T ss_pred HHHHHHHHHHHHHHHHhccchhccccccc-ccCCceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46778999999999999999998887644 35678999999999999976899999999999999999999999999999
Q ss_pred hhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCC
Q 024705 145 QKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMY 224 (264)
Q Consensus 145 ~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~ 224 (264)
+..|++|+|+++|+...+.+++++|++++++.+.++.+.++++..+..++++.++++|||||+++++++.++++..++..
T Consensus 85 ~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~aL~~r~E~~g~~g~~~ 164 (790)
T PRK09519 85 QAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSH 164 (790)
T ss_pred HHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhhcCCCeEEEEcchhhhcchhhccCCCCccc
Confidence 99999999999999999999999999999999999999999999999988888999999999999998788888766555
Q ss_pred cHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhh
Q 024705 225 SDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLK 262 (264)
Q Consensus 225 ~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~ 262 (264)
.+.|++.+++.|++|.+.++++|+++|++||++.++..
T Consensus 165 ~~~q~rl~~q~L~~L~~~l~~~nvtvi~TNQv~~~~g~ 202 (790)
T PRK09519 165 VGLQARLMSQALRKMTGALNNSGTTAIFINQLRDKIGV 202 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceecCCC
Confidence 67788888899999999999999999999999987753
No 6
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=99.96 E-value=9.1e-28 Score=207.45 Aligned_cols=192 Identities=47% Similarity=0.693 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHhcCCccccccccccCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhh
Q 024705 67 DNALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK 146 (264)
Q Consensus 67 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~ 146 (264)
...+...+.+....++....+......+......++||+..||.+|| ||+++|.++.|+||+||||||+|++++.+++.
T Consensus 8 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~TGs~~LD~~LG-GGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~ 86 (279)
T COG0468 8 EKALEAALAQIEKAFGKGSIMALGGDERREDIEAISTGSLALDEALG-GGLPRGRITEIYGPESSGKTTLALQLVANAQK 86 (279)
T ss_pred hhHHHHHHHHHHHhhcccchhhhhHHHHhhccccccccchhHHHHhc-CCcccceEEEEecCCCcchhhHHHHHHHHhhc
Confidence 34455566677777777666554322223568999999999999999 99999999999999999999999999999999
Q ss_pred cCCeEEEEecCCCCCHHHHHHcCCC-ccceeEeCCCCHHHHHHHHHHHhhcCC--ccEEEEcCccccccccccCCCcCCC
Q 024705 147 LGGYCAYLDVENALDPSLAEAMGID-AENLLIAQPDSAENLLSVVDTLTKSGS--IDVIVVDSVAALIPKCEIGVPINGM 223 (264)
Q Consensus 147 ~g~~v~~~~~e~~~~~~~~~~~g~~-~~~l~~~~~~~~ee~~~~i~~~~~~~~--~~~vvIDsl~~~~~~~~~~~~~~~~ 223 (264)
.|++++|+++|..+++.+++.++.+ .+++.+.++.+.++...++..+..... ++++||||++++++....+ +.
T Consensus 87 ~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~~~~~~i~LvVVDSvaa~~r~~~~~----d~ 162 (279)
T COG0468 87 PGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLARSGAEKIDLLVVDSVAALVRAEEIE----DG 162 (279)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHHHhccCCCCEEEEecCcccchhhhcC----cc
Confidence 9999999999999999999999999 999999999999999998888876666 9999999999999744333 34
Q ss_pred CcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 224 YSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 224 ~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
..+.+++.+++.++.|...++++|++||++||++.+.+..
T Consensus 163 ~~~~~~r~ls~~l~~L~~~a~~~~~~vi~~NQv~~k~~~~ 202 (279)
T COG0468 163 HLGLRARLLSKALRKLTRLANKYNTAVIFTNQVRAKIGVM 202 (279)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCcEEEEECceeeecCcc
Confidence 5568889999999999999999999999999999887654
No 7
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=99.94 E-value=2.1e-25 Score=197.28 Aligned_cols=161 Identities=28% Similarity=0.397 Sum_probs=127.3
Q ss_pred CCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhh------cCCeEEEEecCCCCCHH----HH
Q 024705 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK------LGGYCAYLDVENALDPS----LA 165 (264)
Q Consensus 96 ~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~------~g~~v~~~~~e~~~~~~----~~ 165 (264)
.....++||+++||.+|| ||+++|++++|+||||+|||+|+++++.+++. .+++|+|+++|+++... ++
T Consensus 73 ~~~~~isTG~~~LD~lLg-GGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a 151 (313)
T TIGR02238 73 KKVLKITTGSQALDGILG-GGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIA 151 (313)
T ss_pred ccCceeCCCCHHHHHHhC-CCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 346789999999999999 99999999999999999999999999987653 36799999999987763 56
Q ss_pred HHcCCCcc----ceeEeCCCCHHHHHHHHHH---HhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHH
Q 024705 166 EAMGIDAE----NLLIAQPDSAENLLSVVDT---LTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRK 238 (264)
Q Consensus 166 ~~~g~~~~----~l~~~~~~~~ee~~~~i~~---~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~ 238 (264)
+++|++++ ++.+.+..+.++..+.+.. .+...++++|||||+++++. .++.+.. + .. .+++.+.+.+..
T Consensus 152 ~~~g~d~~~~l~~i~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r-~~~~~~g-~-~~-~r~~~l~~~~~~ 227 (313)
T TIGR02238 152 ERFGVDPDAVLDNILYARAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFR-VDFSGRG-E-LS-ERQQKLAQMLSR 227 (313)
T ss_pred HHcCCChHHhcCcEEEecCCCHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhh-hhccCcc-c-hH-HHHHHHHHHHHH
Confidence 77888754 6778888888877766554 34556899999999999984 4554321 1 11 223336667777
Q ss_pred HHHHHhccCcEEEEEcccchHhh
Q 024705 239 IHYSLCQSHTLIIFLNQVKVLLL 261 (264)
Q Consensus 239 l~~~l~~~g~tVi~i~h~~~~~~ 261 (264)
|.+.++++|++||++||++.+.+
T Consensus 228 L~~la~~~~vavvitNqv~~~~~ 250 (313)
T TIGR02238 228 LNKISEEFNVAVFVTNQVQADPG 250 (313)
T ss_pred HHHHHHHcCcEEEEECceEecCC
Confidence 77778999999999999998754
No 8
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.4e-25 Score=197.30 Aligned_cols=151 Identities=28% Similarity=0.428 Sum_probs=139.6
Q ss_pred CCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH--HHHHHcCCCcc
Q 024705 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAE 173 (264)
Q Consensus 96 ~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~--~~~~~~g~~~~ 173 (264)
.+.++++||+.+||+.|| ||+-+|++++|.|.||.|||||+++++..++.++ +|+|++.|++..+ .|++++|++.+
T Consensus 70 ~~~~Ri~tg~~EldRVLG-GG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES~~QiklRA~RL~~~~~ 147 (456)
T COG1066 70 EEEPRISTGIEELDRVLG-GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEESLQQIKLRADRLGLPTN 147 (456)
T ss_pred eecccccCChHHHHhhhc-CCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcCHHHHHHHHHHhCCCcc
Confidence 567899999999999999 9999999999999999999999999999999888 9999999999998 68999999999
Q ss_pred ceeEeCCCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEE
Q 024705 174 NLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFL 253 (264)
Q Consensus 174 ~l~~~~~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i 253 (264)
++++....+.+++...+.. .+|+++||||++.++. +++++.+++. .|+|+.+..|.+++ |..|++++++
T Consensus 148 ~l~l~aEt~~e~I~~~l~~----~~p~lvVIDSIQT~~s-~~~~SapGsV---sQVRe~t~~L~~~A---K~~~i~~fiV 216 (456)
T COG1066 148 NLYLLAETNLEDIIAELEQ----EKPDLVVIDSIQTLYS-EEITSAPGSV---SQVREVAAELMRLA---KTKNIAIFIV 216 (456)
T ss_pred ceEEehhcCHHHHHHHHHh----cCCCEEEEeccceeec-ccccCCCCcH---HHHHHHHHHHHHHH---HHcCCeEEEE
Confidence 9999999999999888876 5999999999999995 6778878776 89999999998888 9999999999
Q ss_pred cccchH
Q 024705 254 NQVKVL 259 (264)
Q Consensus 254 ~h~~~~ 259 (264)
.|++++
T Consensus 217 GHVTKe 222 (456)
T COG1066 217 GHVTKE 222 (456)
T ss_pred EEEccc
Confidence 999875
No 9
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=99.93 E-value=1e-24 Score=194.34 Aligned_cols=160 Identities=28% Similarity=0.346 Sum_probs=126.7
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhh------cCCeEEEEecCCCCCHH----HHH
Q 024705 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK------LGGYCAYLDVENALDPS----LAE 166 (264)
Q Consensus 97 ~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~------~g~~v~~~~~e~~~~~~----~~~ 166 (264)
...+++||+++||.+|| ||++.|++++|+|+||+|||+|+++++.+.+. .+++++|+++|+++.+. +++
T Consensus 104 ~~~~isTG~~~LD~lLg-GGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~ 182 (344)
T PLN03187 104 SVVRITTGSQALDELLG-GGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAE 182 (344)
T ss_pred cCceecCCcHhHHhhcC-CCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHH
Confidence 56789999999999999 99999999999999999999999999987753 24799999999988773 566
Q ss_pred HcCCCc----cceeEeCCCCHHHHHHHHHH---HhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHH
Q 024705 167 AMGIDA----ENLLIAQPDSAENLLSVVDT---LTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKI 239 (264)
Q Consensus 167 ~~g~~~----~~l~~~~~~~~ee~~~~i~~---~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l 239 (264)
++|+++ +++.+.++.+.++....+.. .+...++++|||||+++++. .++.+.. ... ..++.+.+.+..|
T Consensus 183 ~~g~d~~~~l~~I~~~~~~~~e~~~~~l~~l~~~i~~~~~~LvVIDSital~r-~~~~~rg--~l~-~rq~~L~~~~~~L 258 (344)
T PLN03187 183 RFGMDADAVLDNIIYARAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFR-VDFTGRG--ELA-ERQQKLAQMLSRL 258 (344)
T ss_pred HcCCChhhhcCeEEEecCCCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHhhh-ccccCcc--chH-HHHHHHHHHHHHH
Confidence 788875 46788888888877665544 34557899999999999884 4544321 111 2334466777778
Q ss_pred HHHHhccCcEEEEEcccchHhh
Q 024705 240 HYSLCQSHTLIIFLNQVKVLLL 261 (264)
Q Consensus 240 ~~~l~~~g~tVi~i~h~~~~~~ 261 (264)
.+.++++|++||++||++.+.+
T Consensus 259 ~~lA~~~~vavvvTNqv~~~~~ 280 (344)
T PLN03187 259 TKIAEEFNVAVYMTNQVIADPG 280 (344)
T ss_pred HHHHHHcCCEEEEEecEEEcCC
Confidence 7788999999999999987653
No 10
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=99.91 E-value=1.5e-23 Score=177.76 Aligned_cols=156 Identities=43% Similarity=0.632 Sum_probs=124.0
Q ss_pred cccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcC------CeEEEEecCCCCCHHH----HHHcCC
Q 024705 101 ISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLG------GYCAYLDVENALDPSL----AEAMGI 170 (264)
Q Consensus 101 i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g------~~v~~~~~e~~~~~~~----~~~~g~ 170 (264)
++||+++||.+++ ||+++|++++|.||||+|||+|+++++.+....+ .+|+|++.|......+ ++..+.
T Consensus 1 i~tG~~~lD~~l~-GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~ 79 (226)
T cd01393 1 ISTGSKALDELLG-GGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGL 79 (226)
T ss_pred CCCCcHHHHHHhC-CCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhcc
Confidence 5899999999999 9999999999999999999999999999988777 8999999998876633 333343
Q ss_pred C----ccceeEeCCCCHHHHHHHHHHHhh---cCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHH
Q 024705 171 D----AENLLIAQPDSAENLLSVVDTLTK---SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSL 243 (264)
Q Consensus 171 ~----~~~l~~~~~~~~ee~~~~i~~~~~---~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l 243 (264)
+ .+++.+....+.+++...+..+.+ ..++++|||||++.++.. +..+.. ....+.+.+.+.+..|...+
T Consensus 80 ~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~-~~~~~~---~~~~~~~~l~~~~~~L~~~a 155 (226)
T cd01393 80 DPEEVLDNIYVARPYNGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRK-EFIGRG---MLAERARLLSQALRKLLRLA 155 (226)
T ss_pred chhhhhccEEEEeCCCHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhh-hhcCCc---hHHHHHHHHHHHHHHHHHHH
Confidence 3 457788888888888888877755 678999999999999852 222110 12344455667777777777
Q ss_pred hccCcEEEEEcccchHhh
Q 024705 244 CQSHTLIIFLNQVKVLLL 261 (264)
Q Consensus 244 ~~~g~tVi~i~h~~~~~~ 261 (264)
+++|++||++||+++..+
T Consensus 156 ~~~~~~vi~tnq~~~~~~ 173 (226)
T cd01393 156 DKFNVAVVFTNQVRAKVD 173 (226)
T ss_pred HHhCcEEEEEEEEeeecc
Confidence 999999999999987654
No 11
>PTZ00035 Rad51 protein; Provisional
Probab=99.91 E-value=3.2e-23 Score=185.27 Aligned_cols=161 Identities=25% Similarity=0.368 Sum_probs=126.3
Q ss_pred CCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhh------cCCeEEEEecCCCCCHH----HH
Q 024705 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK------LGGYCAYLDVENALDPS----LA 165 (264)
Q Consensus 96 ~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~------~g~~v~~~~~e~~~~~~----~~ 165 (264)
.....++||+++||.+|+ ||+++|++++|+||||+|||+|+++++..... .+++++|+++|..+.+. .+
T Consensus 95 ~~~~~isTG~~~LD~lLg-GGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia 173 (337)
T PTZ00035 95 KNIIRITTGSTQLDKLLG-GGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIA 173 (337)
T ss_pred ccCccccCCcHHHHHHhC-CCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHH
Confidence 456789999999999999 99999999999999999999999999887762 56789999999987653 46
Q ss_pred HHcCCCc----cceeEeCCCCHHHHHHHHHH---HhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHH
Q 024705 166 EAMGIDA----ENLLIAQPDSAENLLSVVDT---LTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRK 238 (264)
Q Consensus 166 ~~~g~~~----~~l~~~~~~~~ee~~~~i~~---~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~ 238 (264)
+++|+++ +++.+.+..+.++....+.. .+...++++|||||+++++. .++.+.. ....+++.+.+.+..
T Consensus 174 ~~~g~~~~~~l~nI~~~~~~~~e~~~~~l~~~~~~l~~~~~~lvVIDSital~r-~~~~~~~---~~~~r~~~l~~~~~~ 249 (337)
T PTZ00035 174 ERFGLDPEDVLDNIAYARAYNHEHQMQLLSQAAAKMAEERFALLIVDSATALFR-VDYSGRG---ELAERQQHLGKFLRA 249 (337)
T ss_pred HHhCCChHhHhhceEEEccCCHHHHHHHHHHHHHHhhccCccEEEEECcHHhhh-hhccCcc---cHHHHHHHHHHHHHH
Confidence 6677775 56778888888877666543 33457899999999999873 4444321 111234446677777
Q ss_pred HHHHHhccCcEEEEEcccchHhh
Q 024705 239 IHYSLCQSHTLIIFLNQVKVLLL 261 (264)
Q Consensus 239 l~~~l~~~g~tVi~i~h~~~~~~ 261 (264)
|.+.++++|++||++||++.+.+
T Consensus 250 L~~la~~~~vavvvtNqv~~~~~ 272 (337)
T PTZ00035 250 LQKLADEFNVAVVITNQVMADVD 272 (337)
T ss_pred HHHHHHHcCcEEEEecceEEecC
Confidence 77777999999999999987653
No 12
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=99.91 E-value=1.9e-23 Score=188.72 Aligned_cols=152 Identities=28% Similarity=0.403 Sum_probs=125.4
Q ss_pred CCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH--HHHHHcCCCcc
Q 024705 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAE 173 (264)
Q Consensus 96 ~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~--~~~~~~g~~~~ 173 (264)
...++++||+++||++|| ||+++|++++|.|+||+|||||+++++...+..+++++|++.|++..+ .+++++|++.+
T Consensus 59 ~~~~ri~TGi~eLD~vLg-GGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~ 137 (372)
T cd01121 59 EEEERIPTGIEELDRVLG-GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTE 137 (372)
T ss_pred cccCccccCCHHHHHhhc-CCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcc
Confidence 356789999999999999 999999999999999999999999999999988899999999988776 46788999999
Q ss_pred ceeEeCCCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEE
Q 024705 174 NLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFL 253 (264)
Q Consensus 174 ~l~~~~~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i 253 (264)
++.+....+.+++.+.+. ..+++++||||++.++. .+.++.++. ..|.+.+...|.+++ ++.|++++++
T Consensus 138 ~l~l~~e~~le~I~~~i~----~~~~~lVVIDSIq~l~~-~~~~~~~g~---~~qvr~~~~~L~~la---k~~~itvilv 206 (372)
T cd01121 138 NLYLLAETNLEDILASIE----ELKPDLVIIDSIQTVYS-SELTSAPGS---VSQVRECTAELMRFA---KERNIPIFIV 206 (372)
T ss_pred cEEEEccCcHHHHHHHHH----hcCCcEEEEcchHHhhc-cccccCCCC---HHHHHHHHHHHHHHH---HHcCCeEEEE
Confidence 998887777777766654 35899999999999874 343333332 256665555555555 9999999999
Q ss_pred cccchH
Q 024705 254 NQVKVL 259 (264)
Q Consensus 254 ~h~~~~ 259 (264)
+|++++
T Consensus 207 ghvtk~ 212 (372)
T cd01121 207 GHVTKE 212 (372)
T ss_pred eeccCC
Confidence 998764
No 13
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=99.91 E-value=2.2e-23 Score=176.98 Aligned_cols=156 Identities=28% Similarity=0.385 Sum_probs=117.5
Q ss_pred CccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCC-----Ccc
Q 024705 99 PVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGI-----DAE 173 (264)
Q Consensus 99 ~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~-----~~~ 173 (264)
+.++||+++||.+++ ||+++|++++|+|+||+|||+|+++++.+.+..+++|+|+++| .....+...+.- ..+
T Consensus 3 ~~i~tGi~~lD~~l~-GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e-~~~~~r~~~~~~~~~~~~~~ 80 (225)
T PRK09361 3 ERLPTGCKMLDELLG-GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE-GLSPERFKQIAGEDFEELLS 80 (225)
T ss_pred ccccCCcHHHHHHhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC-CCCHHHHHHHHhhChHhHhh
Confidence 478999999999999 9999999999999999999999999999999999999999999 444433322211 234
Q ss_pred ceeEeCCCCHHHHHHHHHHH---hhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEE
Q 024705 174 NLLIAQPDSAENLLSVVDTL---TKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLI 250 (264)
Q Consensus 174 ~l~~~~~~~~ee~~~~i~~~---~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tV 250 (264)
++.+.++.+.++....++.+ +. .+++++||||+.+++. .++.+.. ....+.+.+.+.+..|.+.++++|++|
T Consensus 81 ~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~lvVIDsi~al~~-~~~~~~~---~~~~~~~~l~~~l~~L~~~a~~~~v~v 155 (225)
T PRK09361 81 NIIIFEPSSFEEQSEAIRKAEKLAK-ENVGLIVLDSATSLYR-LELEDEE---DNSKLNRELGRQLTHLLKLARKHDLAV 155 (225)
T ss_pred CeEEEeCCCHHHHHHHHHHHHHHHH-hcccEEEEeCcHHHhH-HHhcCCc---cHHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 67777777776655444433 33 6899999999999874 3322211 112334556676777777779999999
Q ss_pred EEEcccchHhh
Q 024705 251 IFLNQVKVLLL 261 (264)
Q Consensus 251 i~i~h~~~~~~ 261 (264)
+++||+....+
T Consensus 156 i~tnq~~~~~~ 166 (225)
T PRK09361 156 VITNQVYSDID 166 (225)
T ss_pred EEEccceecCC
Confidence 99999886543
No 14
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=99.91 E-value=1.4e-23 Score=194.41 Aligned_cols=152 Identities=25% Similarity=0.309 Sum_probs=125.3
Q ss_pred CCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH--HHHHHcCCCcc
Q 024705 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAE 173 (264)
Q Consensus 96 ~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~--~~~~~~g~~~~ 173 (264)
.+.++++||+++||++|| ||+++|++++|.|+||+|||||+++++.++++.+++|+|++.|++..+ .+++++|++.+
T Consensus 71 ~~~~ri~TGi~~LD~vLg-GGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~ 149 (454)
T TIGR00416 71 EEVPRFSSGFGELDRVLG-GGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEP 149 (454)
T ss_pred cccCccccCcHHHHHHhc-CCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChH
Confidence 456789999999999999 999999999999999999999999999999988899999999998776 46778999999
Q ss_pred ceeEeCCCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEE
Q 024705 174 NLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFL 253 (264)
Q Consensus 174 ~l~~~~~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i 253 (264)
++.+....+.+++...+. ..+++++||||++.++. .+..+.+++ ..|.+.+...|.+++ ++.|+|++++
T Consensus 150 ~l~~~~e~~~~~I~~~i~----~~~~~~vVIDSIq~l~~-~~~~~~~g~---~~q~r~~~~~L~~~a---k~~giTvllt 218 (454)
T TIGR00416 150 NLYVLSETNWEQICANIE----EENPQACVIDSIQTLYS-PDISSAPGS---VSQVRECTAELMRLA---KTRGIAIFIV 218 (454)
T ss_pred HeEEcCCCCHHHHHHHHH----hcCCcEEEEecchhhcc-cccccCCCC---HHHHHHHHHHHHHHH---HHhCCEEEEE
Confidence 998888777777666554 45899999999999874 343333332 256665555555555 9999999999
Q ss_pred cccchH
Q 024705 254 NQVKVL 259 (264)
Q Consensus 254 ~h~~~~ 259 (264)
+|+.++
T Consensus 219 ~hvtke 224 (454)
T TIGR00416 219 GHVTKE 224 (454)
T ss_pred eccccC
Confidence 998764
No 15
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=99.91 E-value=3.7e-23 Score=184.60 Aligned_cols=161 Identities=27% Similarity=0.355 Sum_probs=125.4
Q ss_pred CCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhh------cCCeEEEEecCCCCCHH----HH
Q 024705 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK------LGGYCAYLDVENALDPS----LA 165 (264)
Q Consensus 96 ~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~------~g~~v~~~~~e~~~~~~----~~ 165 (264)
.....++||+++||.+|+ ||+++|++++|+|+||+|||+|+++++.++.. .+++|+|+++|+++.+. .+
T Consensus 100 ~~~~~i~tG~~~LD~lL~-GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia 178 (342)
T PLN03186 100 QEIIQITTGSRELDKILE-GGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIA 178 (342)
T ss_pred cCcceeCCCCHHHHHhhc-CCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHH
Confidence 356789999999999999 99999999999999999999999999987652 23589999999987764 46
Q ss_pred HHcCCCc----cceeEeCCCCHHHHHHHHHH---HhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHH
Q 024705 166 EAMGIDA----ENLLIAQPDSAENLLSVVDT---LTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRK 238 (264)
Q Consensus 166 ~~~g~~~----~~l~~~~~~~~ee~~~~i~~---~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~ 238 (264)
+++|+++ +++.+....+.+++...+.. .+...++++|||||+++++. .++.+.. + . ...++.+.+.++.
T Consensus 179 ~~~~~~~~~~l~~i~~~~~~~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr-~~~~~~g-~-l-~~r~~~L~~~l~~ 254 (342)
T PLN03186 179 ERFGLNGADVLENVAYARAYNTDHQSELLLEAASMMAETRFALMIVDSATALYR-TEFSGRG-E-L-SARQMHLGKFLRS 254 (342)
T ss_pred HHcCCChhhhccceEEEecCCHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHH-HHhcCCc-c-H-HHHHHHHHHHHHH
Confidence 6678876 46777777888877665543 34567899999999999884 4444321 1 1 1223346677777
Q ss_pred HHHHHhccCcEEEEEcccchHhh
Q 024705 239 IHYSLCQSHTLIIFLNQVKVLLL 261 (264)
Q Consensus 239 l~~~l~~~g~tVi~i~h~~~~~~ 261 (264)
|.+.++++|++||++||+..+.+
T Consensus 255 L~~lA~~~~vaVviTNqv~~~~~ 277 (342)
T PLN03186 255 LQRLADEFGVAVVITNQVVAQVD 277 (342)
T ss_pred HHHHHHHcCCEEEEEcCEEEccC
Confidence 77777999999999999987654
No 16
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=99.91 E-value=1.2e-23 Score=181.59 Aligned_cols=161 Identities=34% Similarity=0.506 Sum_probs=120.0
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhh------cCCeEEEEecCCCCCHHH----HH
Q 024705 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK------LGGYCAYLDVENALDPSL----AE 166 (264)
Q Consensus 97 ~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~------~g~~v~~~~~e~~~~~~~----~~ 166 (264)
....++||++.||.+|+ ||++.|.+++|+||||+|||.||++++.+++. .+++|+||++|..+...| ++
T Consensus 16 ~~~~i~Tg~~~lD~~L~-GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~ 94 (256)
T PF08423_consen 16 RWSRISTGCKSLDELLG-GGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAE 94 (256)
T ss_dssp TS-EE--SSHHHHHHTT-SSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHH
T ss_pred cCCeeCCCCHHHHHhhC-CCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhh
Confidence 45679999999999999 99999999999999999999999999988763 367899999999988743 45
Q ss_pred HcCCCc----cceeEeCCCCHHHHHHHHHHH---hhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHH
Q 024705 167 AMGIDA----ENLLIAQPDSAENLLSVVDTL---TKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKI 239 (264)
Q Consensus 167 ~~g~~~----~~l~~~~~~~~ee~~~~i~~~---~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l 239 (264)
+.+.+. +++.+....+.+++...+..+ +...++++|||||+.+++. .++.+.. ......+.+.+.+..|
T Consensus 95 ~~~~~~~~~l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr-~e~~~~~---~~~~R~~~L~~~~~~L 170 (256)
T PF08423_consen 95 RFGLDPEEILDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAALFR-SEFSGRG---DLAERQRMLARLARIL 170 (256)
T ss_dssp HTTS-HHHHHHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHH-HHSGSTT---THHHHHHHHHHHHHHH
T ss_pred ccccccchhhhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHHHHH-HHHccch---hhHHHHHHHHHHHHHH
Confidence 556553 477788888888777666543 4457899999999999983 5554321 1123445566666667
Q ss_pred HHHHhccCcEEEEEcccchHhhh
Q 024705 240 HYSLCQSHTLIIFLNQVKVLLLK 262 (264)
Q Consensus 240 ~~~l~~~g~tVi~i~h~~~~~~~ 262 (264)
.+++++++++||++||+..+.+.
T Consensus 171 ~~lA~~~~iaVvvTNqv~~~~~~ 193 (256)
T PF08423_consen 171 KRLARKYNIAVVVTNQVTTKIDS 193 (256)
T ss_dssp HHHHHHTT-EEEEEEEECSSTT-
T ss_pred HHHHHhCCceEEeeceeeecCCc
Confidence 77779999999999999977654
No 17
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=99.90 E-value=5.2e-23 Score=173.78 Aligned_cols=154 Identities=25% Similarity=0.413 Sum_probs=114.4
Q ss_pred cccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCC----Ccccee
Q 024705 101 ISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGI----DAENLL 176 (264)
Q Consensus 101 i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~----~~~~l~ 176 (264)
++||+++||.+++ ||+++|++++|+|+||+|||||+++++.+.+..|++|+|++.|........+..+. ...++.
T Consensus 1 i~TGi~~LD~~l~-GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~~~~~~ 79 (218)
T cd01394 1 LPTGCKGLDELLG-GGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGDRPERAASSII 79 (218)
T ss_pred CCcchhHHHHHhc-CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhHChHhhhcCEE
Confidence 5899999999999 99999999999999999999999999999998999999999987765422222221 234667
Q ss_pred EeCCCCHHHHHHHH---HHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEE
Q 024705 177 IAQPDSAENLLSVV---DTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFL 253 (264)
Q Consensus 177 ~~~~~~~ee~~~~i---~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i 253 (264)
+.++.+.++....+ ....+ .++++|||||++.++. .+..+... ...+.+.+.+.+..|...++++|++||++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~-~~~~lvvIDsi~~l~~-~~~~~~~~---~~~~~~~l~~~~~~L~~~a~~~~~~vi~t 154 (218)
T cd01394 80 VFEPMDFNEQGRAIQETETFAD-EKVDLVVVDSATALYR-LELGDDDT---TIKNYRELAKQLTFLLWLARKHDVAVVIT 154 (218)
T ss_pred EEeCCCHHHHHHHHHHHHHHHh-cCCcEEEEechHHhhh-HHhcCccc---hHHHHHHHHHHHHHHHHHHHHhCCEEEEe
Confidence 77776666555433 33333 3589999999999873 33322211 12344556666777777779999999999
Q ss_pred cccchHh
Q 024705 254 NQVKVLL 260 (264)
Q Consensus 254 ~h~~~~~ 260 (264)
||+.+..
T Consensus 155 ~q~~~~~ 161 (218)
T cd01394 155 NQVYSDV 161 (218)
T ss_pred cCCEEcC
Confidence 9997644
No 18
>PRK11823 DNA repair protein RadA; Provisional
Probab=99.90 E-value=6.2e-23 Score=189.93 Aligned_cols=152 Identities=28% Similarity=0.410 Sum_probs=124.8
Q ss_pred CCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH--HHHHHcCCCcc
Q 024705 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAE 173 (264)
Q Consensus 96 ~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~--~~~~~~g~~~~ 173 (264)
...++++||+++||+++| ||+++|++++|.|+||+|||||+++++...+..+++|+|+++|++..+ .+++++|++.+
T Consensus 57 ~~~~ri~TGi~~LD~~Lg-GGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~ 135 (446)
T PRK11823 57 EEEPRISTGIGELDRVLG-GGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSD 135 (446)
T ss_pred ccCCcccCCcHHHHHHhc-CCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChh
Confidence 456789999999999999 999999999999999999999999999999888999999999998877 46888999988
Q ss_pred ceeEeCCCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEE
Q 024705 174 NLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFL 253 (264)
Q Consensus 174 ~l~~~~~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i 253 (264)
++.+....+.+++.+.++ ..++++|||||++.++. .++++.+++ ..|.+.+...|.+++ +++|++++++
T Consensus 136 ~l~~~~e~~l~~i~~~i~----~~~~~lVVIDSIq~l~~-~~~~~~~g~---~~qvr~~~~~L~~~a---k~~~itvilv 204 (446)
T PRK11823 136 NLYLLAETNLEAILATIE----EEKPDLVVIDSIQTMYS-PELESAPGS---VSQVRECAAELMRLA---KQRGIAVFLV 204 (446)
T ss_pred cEEEeCCCCHHHHHHHHH----hhCCCEEEEechhhhcc-ccccCCCCC---HHHHHHHHHHHHHHH---HHcCCEEEEE
Confidence 888887777777666554 35899999999999884 444433332 256665555555554 9999999999
Q ss_pred cccchH
Q 024705 254 NQVKVL 259 (264)
Q Consensus 254 ~h~~~~ 259 (264)
+|++++
T Consensus 205 ~hvtk~ 210 (446)
T PRK11823 205 GHVTKE 210 (446)
T ss_pred eeccCC
Confidence 998753
No 19
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.90 E-value=9.6e-24 Score=197.70 Aligned_cols=222 Identities=20% Similarity=0.173 Sum_probs=157.6
Q ss_pred ccccccccccccccccchhhHHHHHhhhhhcCCcccccCCCCCCCCCCcccchHHHHH---H-HHH------HHHHHHhc
Q 024705 12 SIAPRRFFSLFPSFSQNGRRDAITCIGMNIHSLSSAAEVPEFDDEPHDDAKIMQKDNA---L-RLA------LSQLANDF 81 (264)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~r~~~~~l~~~~~~~~~t~~~~~~~~~~~~dd~~~~~~~~~---l-~~~------l~~l~~~~ 81 (264)
.+||++.+...+......|+++.++..+++..++|+ ++.........+.. + +.. |++...
T Consensus 125 vIDSl~aL~~~~~~~~~~r~~l~~Li~~L~~~g~Tv--------LLtsh~~~~~~~~~~~~~~e~laDgVI~L~~~~~-- 194 (484)
T TIGR02655 125 SIDSVTAVFQQYDAVSVVRREIFRLVARLKQIGVTT--------VMTTERIEEYGPIARYGVEEFVSDNVVILRNVLE-- 194 (484)
T ss_pred EEeehhHhhhhcCchHHHHHHHHHHHHHHHHCCCEE--------EEEecCcccccccccCCceeEeeeeEEEEEEEec--
Confidence 688888876555555578999999999999999998 55443221100000 1 110 111100
Q ss_pred CCcc-c-ccccc---------------------cc--------CCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCC
Q 024705 82 GKES-M-LSLKR---------------------FF--------GSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREA 130 (264)
Q Consensus 82 ~~~~-~-~~~~~---------------------~~--------~~~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~G 130 (264)
+... + +++.. .+ .......++||+++||++|| ||+++|++++|.||||
T Consensus 195 ~~~~~R~l~I~K~Rgs~~~~~~~~~~It~~Gi~v~p~~~~~~~~~~~~~~~~tGi~~lD~~lg-GG~~~gs~~li~G~~G 273 (484)
T TIGR02655 195 GERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFPLGAMRLTQRSSNVRVSSGVVRLDEMCG-GGFFKDSIILATGATG 273 (484)
T ss_pred CCEEEEEEEEEECCCCCcCCceEEEEEcCCcEEEEecccccccccccccccCCChHhHHHHhc-CCccCCcEEEEECCCC
Confidence 1101 1 11110 00 01235579999999999999 9999999999999999
Q ss_pred CChHHHHHHHHHHHhhcCCeEEEEecCCCCCH--HHHHHcCCCccc------eeEeCC----CCHHHHHHHHHHHhhcCC
Q 024705 131 SGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAEN------LLIAQP----DSAENLLSVVDTLTKSGS 198 (264)
Q Consensus 131 sGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~--~~~~~~g~~~~~------l~~~~~----~~~ee~~~~i~~~~~~~~ 198 (264)
+|||||+.+++.+.+++|++|+|+++|++..+ .+++++|++.++ +.+... ...++++..+.+.++..+
T Consensus 274 ~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~ 353 (484)
T TIGR02655 274 TGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGLEDHLQIIKSEIADFK 353 (484)
T ss_pred CCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCChHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999988 578899998764 444332 345788888888888889
Q ss_pred ccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccc
Q 024705 199 IDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVK 257 (264)
Q Consensus 199 ~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~ 257 (264)
+++|||||++.+... + ...+.+ ..+.+|...+|+.|+|+++++...
T Consensus 354 ~~~vvIDsi~~~~~~--~--------~~~~~r---~~~~~l~~~lk~~~it~~~t~~~~ 399 (484)
T TIGR02655 354 PARIAIDSLSALARG--V--------SNNAFR---QFVIGVTGYAKQEEITGFFTNTSD 399 (484)
T ss_pred CCEEEEcCHHHHHHh--c--------CHHHHH---HHHHHHHHHHhhCCCeEEEeeccc
Confidence 999999999998731 2 113333 345666667799999999997654
No 20
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=99.89 E-value=1.6e-22 Score=173.08 Aligned_cols=145 Identities=23% Similarity=0.348 Sum_probs=114.7
Q ss_pred CccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH--HHHHHcCCCcc---
Q 024705 99 PVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAE--- 173 (264)
Q Consensus 99 ~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~--~~~~~~g~~~~--- 173 (264)
++++||++.||++++ ||+++|++++|+||||+|||+|+.+++.+.+.+|++++|+++|++..+ .+++.+|++.+
T Consensus 1 ~ri~tGi~~LD~~l~-GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~g~~~~~~~ 79 (237)
T TIGR03877 1 KRVKTGIPGMDEILH-GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWDVRKYE 79 (237)
T ss_pred CccccCcHhHHHHhc-CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHhCCCHHHHh
Confidence 358999999999999 999999999999999999999999999988888999999999998776 45667787653
Q ss_pred ---ceeEe-------------------CCCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHH
Q 024705 174 ---NLLIA-------------------QPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRI 231 (264)
Q Consensus 174 ---~l~~~-------------------~~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~ 231 (264)
++.+. .+.+.+++...+...++..+++++||||++.++... ....+
T Consensus 80 ~~g~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~~~~-----------~~~~r- 147 (237)
T TIGR03877 80 EEGKFAIVDAFTGGIGEAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLYITK-----------PAMAR- 147 (237)
T ss_pred hcCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhhcCC-----------hHHHH-
Confidence 22222 234567788888888777889999999999876310 12222
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcccch
Q 024705 232 MTQALRKIHYSLCQSHTLIIFLNQVKV 258 (264)
Q Consensus 232 i~~~L~~l~~~l~~~g~tVi~i~h~~~ 258 (264)
+.+.++.+.+++.|+|+++++|...
T Consensus 148 --~~l~~l~~~lk~~~~t~llt~~~~~ 172 (237)
T TIGR03877 148 --SIVMQLKRVLSGLGCTSIFVSQVSV 172 (237)
T ss_pred --HHHHHHHHHHHhCCCEEEEEECccc
Confidence 3455566666899999999998753
No 21
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=99.89 E-value=3.2e-22 Score=173.22 Aligned_cols=144 Identities=22% Similarity=0.348 Sum_probs=112.5
Q ss_pred ccccCcHHHHHHh--------------cCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH---
Q 024705 100 VISTGSLKLDLAL--------------GIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--- 162 (264)
Q Consensus 100 ~i~tG~~~LD~~l--------------~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~--- 162 (264)
+++||++.||+++ + ||+++|++++|+|+||+|||+|+.+++.+.+.+|++++|+++|++...
T Consensus 3 ~~~tGi~glD~~l~~~~~~~~~~~~~~~-GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~ 81 (259)
T TIGR03878 3 GVPTGVEGLDELFFKVEIEEGKIVRKPL-GGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYT 81 (259)
T ss_pred CccCCchhHHHhhccccccccccccccC-CCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHH
Confidence 5799999999999 6 899999999999999999999999999998888999999999976542
Q ss_pred ---HHHHHcCCCcc----ceeEeCCC-------CHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHH
Q 024705 163 ---SLAEAMGIDAE----NLLIAQPD-------SAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQ 228 (264)
Q Consensus 163 ---~~~~~~g~~~~----~l~~~~~~-------~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q 228 (264)
.++..+|++.+ ++.+.++. +.+++...+...++..+++++||||++.+.... ..+
T Consensus 82 ~l~~~a~~~g~d~~~~~~~l~~id~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~-----------~~~ 150 (259)
T TIGR03878 82 SLKERAKAMGVDFDKIEENIILIDAASSTELRENVPNLLATLAYAIKEYKVKNTVIDSITGLYEAK-----------EMM 150 (259)
T ss_pred HHHHHHHHcCCCHHHHhCCEEEEECCCchhhhhhHHHHHHHHHHHHHhhCCCEEEEcCchHhcccc-----------hHH
Confidence 24566888754 45555443 245666677777777899999999999876310 022
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEEcccch
Q 024705 229 SRIMTQALRKIHYSLCQSHTLIIFLNQVKV 258 (264)
Q Consensus 229 ~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~ 258 (264)
.+ +.+.++...+++.|+|+++++|...
T Consensus 151 ~r---~~~~~L~~~lk~~~~t~ll~~e~~~ 177 (259)
T TIGR03878 151 AR---EIVRQLFNFMKKWYQTALFVSQKRS 177 (259)
T ss_pred HH---HHHHHHHHHHHHcCCeEEEEecccc
Confidence 23 4455556666899999999999643
No 22
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=99.89 E-value=5.9e-22 Score=175.78 Aligned_cols=161 Identities=27% Similarity=0.395 Sum_probs=122.1
Q ss_pred CCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhh---cC---CeEEEEecCCCCCHH----HH
Q 024705 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK---LG---GYCAYLDVENALDPS----LA 165 (264)
Q Consensus 96 ~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~---~g---~~v~~~~~e~~~~~~----~~ 165 (264)
.....++||+++||.+|+ ||+++|++++|+||||+|||+|+++++.++.. .| ++|+|+++|+.+.+. ++
T Consensus 73 ~~~~~~~tg~~~lD~ll~-gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia 151 (316)
T TIGR02239 73 QEVIQLTTGSKELDKLLG-GGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIA 151 (316)
T ss_pred cccceeCCCCHHHHHHhc-CCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHH
Confidence 456789999999999999 99999999999999999999999999986542 22 589999999987663 56
Q ss_pred HHcCCCcc----ceeEeCCCCHHHHHHHHHHH---hhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHH
Q 024705 166 EAMGIDAE----NLLIAQPDSAENLLSVVDTL---TKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRK 238 (264)
Q Consensus 166 ~~~g~~~~----~l~~~~~~~~ee~~~~i~~~---~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~ 238 (264)
++++++++ ++.+....+.+++...+... +...++++|||||+++++. .++.+.. . ...++..+.+.+..
T Consensus 152 ~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r-~~~~~~~--~-~~~rq~~l~~~~~~ 227 (316)
T TIGR02239 152 ERYGLNPEDVLDNVAYARAYNTDHQLQLLQQAAAMMSESRFALLIVDSATALYR-TDFSGRG--E-LSARQMHLARFLRS 227 (316)
T ss_pred HHcCCChHHhhccEEEEecCChHHHHHHHHHHHHhhccCCccEEEEECcHHHhh-hhcCCcc--h-HHHHHHHHHHHHHH
Confidence 66787754 45666667777665555443 4456899999999999973 4443321 1 11223345667777
Q ss_pred HHHHHhccCcEEEEEcccchHhh
Q 024705 239 IHYSLCQSHTLIIFLNQVKVLLL 261 (264)
Q Consensus 239 l~~~l~~~g~tVi~i~h~~~~~~ 261 (264)
|.+.++++|++||++||++.+.+
T Consensus 228 L~~la~~~~vavv~tNqv~~~~~ 250 (316)
T TIGR02239 228 LQRLADEFGVAVVITNQVVAQVD 250 (316)
T ss_pred HHHHHHHhCCEEEEECceEEecC
Confidence 77777999999999999997654
No 23
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=99.88 E-value=3.5e-22 Score=170.41 Aligned_cols=156 Identities=29% Similarity=0.457 Sum_probs=116.1
Q ss_pred cccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhc------CCeEEEEecCCCCCHH----HHHHcCC
Q 024705 101 ISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL------GGYCAYLDVENALDPS----LAEAMGI 170 (264)
Q Consensus 101 i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~------g~~v~~~~~e~~~~~~----~~~~~g~ 170 (264)
+|||++.||.+++ ||+++|++++|.||||+|||+|+.+++.+.... +++|+|++.|...... .++..+.
T Consensus 1 ~~tG~~~lD~~l~-GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~ 79 (235)
T cd01123 1 LTTGSKALDELLG-GGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGL 79 (235)
T ss_pred CCCCchhhHhhcc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhcc
Confidence 5899999999999 999999999999999999999999999876544 3799999999976652 3444555
Q ss_pred Cc----cceeEeCCCCHHHHHHH---HHHHhhcC-CccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHH
Q 024705 171 DA----ENLLIAQPDSAENLLSV---VDTLTKSG-SIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYS 242 (264)
Q Consensus 171 ~~----~~l~~~~~~~~ee~~~~---i~~~~~~~-~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~ 242 (264)
++ +++.+....+.+++... +...+... ++++|||||++.++. ....+.. ......+.+.+.+..|.+.
T Consensus 80 ~~~~~~~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~-~~~~~~~---~~~~r~~~l~~~~~~L~~l 155 (235)
T cd01123 80 DPEEVLDNIYVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVTALFR-AEFDGRG---ELAERQQHLAKLLRTLKRL 155 (235)
T ss_pred ChHhHhcCEEEEecCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHH-HHhcCCc---cHHHHHHHHHHHHHHHHHH
Confidence 43 35677777666665544 44445556 899999999999873 2222211 0123444566666677667
Q ss_pred HhccCcEEEEEcccchHhh
Q 024705 243 LCQSHTLIIFLNQVKVLLL 261 (264)
Q Consensus 243 l~~~g~tVi~i~h~~~~~~ 261 (264)
++++|++||++||+....+
T Consensus 156 a~~~~~avl~tn~~~~~~~ 174 (235)
T cd01123 156 ADEFNVAVVITNQVTARPD 174 (235)
T ss_pred HHHhCCEEEEeccEeecCC
Confidence 7999999999999986543
No 24
>PRK05973 replicative DNA helicase; Provisional
Probab=99.88 E-value=4.1e-22 Score=169.08 Aligned_cols=170 Identities=19% Similarity=0.235 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHhcCCccccccccccCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhh
Q 024705 67 DNALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK 146 (264)
Q Consensus 67 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~ 146 (264)
+..+|.+|++++.+-|-.+|..+..... ...| .|++. ||+++|++++|.|+||+|||+|+++++.+++.
T Consensus 22 ~~~~~~~~~~~a~~~g~~~w~~~~~~~~----~~~p-----~~~l~--GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~ 90 (237)
T PRK05973 22 NIPLHEALDRIAAEEGFSSWSLLAAKAA----ATTP-----AEELF--SQLKPGDLVLLGARPGHGKTLLGLELAVEAMK 90 (237)
T ss_pred CCcHHHHHHHHHHHhccchHHHHHHhcc----CCCC-----HHHhc--CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 3468899999999999999966654321 1112 58766 59999999999999999999999999999998
Q ss_pred cCCeEEEEecCCCCCH--HHHHHcCCCccce----eEe--CCCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCC
Q 024705 147 LGGYCAYLDVENALDP--SLAEAMGIDAENL----LIA--QPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGV 218 (264)
Q Consensus 147 ~g~~v~~~~~e~~~~~--~~~~~~g~~~~~l----~~~--~~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~ 218 (264)
+|++++||++|++..+ .++..+|++.++. .+. +..+.+++ ++.+....++++|||||++.+... ...
T Consensus 91 ~Ge~vlyfSlEes~~~i~~R~~s~g~d~~~~~~~~~~d~~d~~~~~~i---i~~l~~~~~~~lVVIDsLq~l~~~--~~~ 165 (237)
T PRK05973 91 SGRTGVFFTLEYTEQDVRDRLRALGADRAQFADLFEFDTSDAICADYI---IARLASAPRGTLVVIDYLQLLDQR--REK 165 (237)
T ss_pred cCCeEEEEEEeCCHHHHHHHHHHcCCChHHhccceEeecCCCCCHHHH---HHHHHHhhCCCEEEEEcHHHHhhc--ccc
Confidence 9999999999999876 5677788887643 222 12334443 334444467899999999988521 110
Q ss_pred CcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 219 PINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 219 ~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
.. +...++.|...+++.|+|||+++|+.+.++.+
T Consensus 166 --------~e---l~~~~~~Lk~~Ak~~gitvIl~sQl~r~~e~~ 199 (237)
T PRK05973 166 --------PD---LSVQVRALKSFARERGLIIVFISQIDRSFDPS 199 (237)
T ss_pred --------hh---HHHHHHHHHHHHHhCCCeEEEEecCccccccC
Confidence 11 22334555555699999999999999988764
No 25
>PRK04328 hypothetical protein; Provisional
Probab=99.88 E-value=7.2e-22 Score=170.14 Aligned_cols=145 Identities=23% Similarity=0.354 Sum_probs=114.8
Q ss_pred CCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH--HHHHHcCCCccc-
Q 024705 98 GPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAEN- 174 (264)
Q Consensus 98 ~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~--~~~~~~g~~~~~- 174 (264)
.++++||++.||++++ ||+++|++++|.|+||+|||+|+.+++.+.+.+|++++|+++|++... ..++.+|++.++
T Consensus 2 ~~rv~tGi~~LD~lL~-GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~ 80 (249)
T PRK04328 2 VKRVKTGIPGMDEILY-GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRNMRQFGWDVRKY 80 (249)
T ss_pred CceecCCchhHHHHhc-CCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHHHHHcCCCHHHH
Confidence 3578999999999999 999999999999999999999999999998889999999999998776 456778886542
Q ss_pred -----eeEe-------------------CCCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHH
Q 024705 175 -----LLIA-------------------QPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSR 230 (264)
Q Consensus 175 -----l~~~-------------------~~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r 230 (264)
+.+. ++.+.+++...+...++..+++++||||++.+... . ....+
T Consensus 81 ~~~~~l~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSlt~l~~~-~----------~~~~r 149 (249)
T PRK04328 81 EEEGKFAIVDAFTGGIGSAAKREKYVVKDPDDVRELIDVLRQAIKDIGAKRVVIDSVSTLYLT-K----------PAMAR 149 (249)
T ss_pred hhcCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHhhCCCEEEEeChhHhhcC-C----------hHHHH
Confidence 2222 22345677777777777789999999999988631 0 12223
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcccc
Q 024705 231 IMTQALRKIHYSLCQSHTLIIFLNQVK 257 (264)
Q Consensus 231 ~i~~~L~~l~~~l~~~g~tVi~i~h~~ 257 (264)
..+..+.+.+++.|+|+++++|..
T Consensus 150 ---~~~~~l~~~lk~~g~t~llt~e~~ 173 (249)
T PRK04328 150 ---SIVMQLKRVLSGLGCTAIFVSQVS 173 (249)
T ss_pred ---HHHHHHHHHHHhCCCEEEEEECcc
Confidence 344555555689999999999986
No 26
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=99.88 E-value=1.9e-21 Score=173.21 Aligned_cols=160 Identities=27% Similarity=0.381 Sum_probs=119.7
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhc------CCeEEEEecCCCCCH----HHHH
Q 024705 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL------GGYCAYLDVENALDP----SLAE 166 (264)
Q Consensus 97 ~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~------g~~v~~~~~e~~~~~----~~~~ 166 (264)
....++||+++||.+|+ ||+++|.+++|+||||+|||+|+++++.+++.+ +++++|+++|+.+.. .+++
T Consensus 80 s~~~~~Tg~~~lD~~l~-GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~ 158 (317)
T PRK04301 80 NVGKITTGSKELDELLG-GGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAE 158 (317)
T ss_pred cCCccCCCCHHHHHHhc-CCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHH
Confidence 45679999999999999 999999999999999999999999999987643 358999999998765 3456
Q ss_pred HcCCCcc----ceeEeCCCCHHHH---HHHHHHHhhc-CCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHH
Q 024705 167 AMGIDAE----NLLIAQPDSAENL---LSVVDTLTKS-GSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRK 238 (264)
Q Consensus 167 ~~g~~~~----~l~~~~~~~~ee~---~~~i~~~~~~-~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~ 238 (264)
++|++++ ++.+.+..+.++. +..+...+.. .++++|||||+++++. .++.+.. + . ...++.+.+.+..
T Consensus 159 ~~g~~~~~~l~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~-~~~~~~~-~-~-~~r~~~l~~~~~~ 234 (317)
T PRK04301 159 ALGLDPDEVLDNIHVARAYNSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFR-AEYVGRG-N-L-AERQQKLNKHLHD 234 (317)
T ss_pred HcCCChHhhhccEEEEeCCCHHHHHHHHHHHHHHHhccCceeEEEEECchHHhh-hhccCCc-c-H-HHHHHHHHHHHHH
Confidence 6787764 4666666655543 3344445554 6899999999999873 3443321 1 1 1223335566666
Q ss_pred HHHHHhccCcEEEEEcccchHhh
Q 024705 239 IHYSLCQSHTLIIFLNQVKVLLL 261 (264)
Q Consensus 239 l~~~l~~~g~tVi~i~h~~~~~~ 261 (264)
|.+.++++|++||++||+.++.+
T Consensus 235 L~~la~~~~vavl~tnqv~~~~~ 257 (317)
T PRK04301 235 LLRLADLYNAAVVVTNQVMARPD 257 (317)
T ss_pred HHHHHHHhCCEEEEeceEEeccc
Confidence 77777999999999999887653
No 27
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=99.86 E-value=5.4e-21 Score=169.86 Aligned_cols=160 Identities=27% Similarity=0.402 Sum_probs=118.5
Q ss_pred CCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhh------cCCeEEEEecCCCCCHH----HH
Q 024705 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK------LGGYCAYLDVENALDPS----LA 165 (264)
Q Consensus 96 ~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~------~g~~v~~~~~e~~~~~~----~~ 165 (264)
.....++||.+.+|.+|+ ||++.|.+++|+||||+|||+|+.+++.+++. .+++++|+++|+.+... .+
T Consensus 72 ~s~~~~~Tg~~~lD~~l~-GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~ 150 (310)
T TIGR02236 72 KTIGKITTGSKELDELLG-GGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMA 150 (310)
T ss_pred ccCCeecCCCHHHHHHhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHH
Confidence 346679999999999999 99999999999999999999999999998763 24599999999987763 34
Q ss_pred HHcCCCc----cceeEeCCCCHHHH---HHHHHHHhhcC--CccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHH
Q 024705 166 EAMGIDA----ENLLIAQPDSAENL---LSVVDTLTKSG--SIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQAL 236 (264)
Q Consensus 166 ~~~g~~~----~~l~~~~~~~~ee~---~~~i~~~~~~~--~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L 236 (264)
+.+|++. +++.+....+.++. +..+...+... ++++|||||++.++. .++.+.. . ....++.+.+.+
T Consensus 151 ~~~gl~~~~~~~~i~i~~~~~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r-~e~~~~~-~--~~~r~~~l~~~~ 226 (310)
T TIGR02236 151 EARGLDPDEVLKNIYVARAYNSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFR-AEYVGRG-A--LAERQQKLNKHL 226 (310)
T ss_pred HHcCCCHHHHhhceEEEecCCHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhh-HhhcCch-h--HHHHHHHHHHHH
Confidence 5567764 45667666655442 33334444443 488999999999873 4444321 1 112234455666
Q ss_pred HHHHHHHhccCcEEEEEcccchHh
Q 024705 237 RKIHYSLCQSHTLIIFLNQVKVLL 260 (264)
Q Consensus 237 ~~l~~~l~~~g~tVi~i~h~~~~~ 260 (264)
..|...++++|++||++||++.+.
T Consensus 227 ~~L~~~a~~~~~~v~~tnqv~~~~ 250 (310)
T TIGR02236 227 HDLLRLADLYNAAVVVTNQVMARP 250 (310)
T ss_pred HHHHHHHHHhCcEEEEeceeeecC
Confidence 777777799999999999998764
No 28
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=99.86 E-value=4.9e-21 Score=160.64 Aligned_cols=145 Identities=24% Similarity=0.370 Sum_probs=106.8
Q ss_pred HHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHc-----CCCccceeEeCCCC
Q 024705 108 LDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAM-----GIDAENLLIAQPDS 182 (264)
Q Consensus 108 LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~-----g~~~~~l~~~~~~~ 182 (264)
||.+|+ ||+++|++++|+||||+|||+|+++++.+.+..|++|+|+++|+ ....+...+ +...+++.+.++.+
T Consensus 1 lD~~l~-GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~-~~~~rl~~~~~~~~~~~~~~i~~~~~~~ 78 (209)
T TIGR02237 1 IDELLG-GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG-LSPERFKQIAEDRPERALSNFIVFEVFD 78 (209)
T ss_pred Chhhhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CCHHHHHHHHHhChHHHhcCEEEEECCC
Confidence 699999 99999999999999999999999999999988899999999997 444322221 22246777777777
Q ss_pred HHHH---HHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchH
Q 024705 183 AENL---LSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVL 259 (264)
Q Consensus 183 ~ee~---~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~ 259 (264)
.++. +..+...+...++++|||||+++++. .+..+.. ..+.+.+...+..|.+.++++|++++++||+...
T Consensus 79 ~~~~~~~~~~l~~~~~~~~~~lvVIDSis~l~~-~~~~~~~-----~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~~~ 152 (209)
T TIGR02237 79 FDEQGVAIQKTSKFIDRDSASLVVVDSFTALYR-LELSDDR-----ISRNRELARQLTLLLSLARKKNLAVVITNQVYTD 152 (209)
T ss_pred HHHHHHHHHHHHHHHhhcCccEEEEeCcHHHhH-HHhCCcc-----HHHHHHHHHHHHHHHHHHHHcCCEEEEEcccEEe
Confidence 6655 44444445556899999999999873 2322211 1233445555566666669999999999998764
Q ss_pred h
Q 024705 260 L 260 (264)
Q Consensus 260 ~ 260 (264)
.
T Consensus 153 ~ 153 (209)
T TIGR02237 153 V 153 (209)
T ss_pred c
Confidence 4
No 29
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=99.86 E-value=1.7e-21 Score=165.41 Aligned_cols=142 Identities=32% Similarity=0.446 Sum_probs=109.6
Q ss_pred cccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhc-CCeEEEEecCCCCCH--HHHHHcCCCccc---
Q 024705 101 ISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVENALDP--SLAEAMGIDAEN--- 174 (264)
Q Consensus 101 i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~-g~~v~~~~~e~~~~~--~~~~~~g~~~~~--- 174 (264)
++||++.||++++ ||+++|++++|.|+||+|||+|+.+++.+.+.+ |++|+|++++++... ..++.+|++.+.
T Consensus 1 V~TGI~~LD~~l~-GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~ 79 (226)
T PF06745_consen 1 VPTGIPGLDELLG-GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYED 79 (226)
T ss_dssp E--SSTTHHHHTT-TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHH
T ss_pred CCCCchhHHHhhc-CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhh
Confidence 6899999999999 999999999999999999999999999999998 999999999998876 456678887653
Q ss_pred ---eeEeC---------CCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHH
Q 024705 175 ---LLIAQ---------PDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYS 242 (264)
Q Consensus 175 ---l~~~~---------~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~ 242 (264)
+.+.+ +.+.+++...+...++..+++++||||++.+.. .. . + .+ +...+..+...
T Consensus 80 ~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~-~~--~-~------~~---~r~~l~~l~~~ 146 (226)
T PF06745_consen 80 SGKLKIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSALLL-YD--D-P------EE---LRRFLRALIKF 146 (226)
T ss_dssp TTSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTT-SS--S-G------GG---HHHHHHHHHHH
T ss_pred cCCEEEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhh-cC--C-H------HH---HHHHHHHHHHH
Confidence 43332 346788888888888777889999999999931 11 0 0 12 23466777777
Q ss_pred HhccCcEEEEEccc
Q 024705 243 LCQSHTLIIFLNQV 256 (264)
Q Consensus 243 l~~~g~tVi~i~h~ 256 (264)
+++.|+|++++.|.
T Consensus 147 l~~~~~t~llt~~~ 160 (226)
T PF06745_consen 147 LKSRGVTTLLTSEM 160 (226)
T ss_dssp HHHTTEEEEEEEEE
T ss_pred HHHCCCEEEEEEcc
Confidence 79999999999985
No 30
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=99.86 E-value=3.4e-20 Score=171.29 Aligned_cols=155 Identities=24% Similarity=0.322 Sum_probs=116.5
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHh-hcCCeEEEEecCCCCCHHH----HHHcCCC
Q 024705 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQ-KLGGYCAYLDVENALDPSL----AEAMGID 171 (264)
Q Consensus 97 ~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~-~~g~~v~~~~~e~~~~~~~----~~~~g~~ 171 (264)
...+++||++.||.+++ |+.+|++++|+|+||+|||+|+++++.+++ ..|.+|+||+.|++..+.. +...|++
T Consensus 173 ~~~gi~tG~~~LD~~~~--G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~~~l~~Rl~~~~~~v~ 250 (421)
T TIGR03600 173 ELTGLSTGLPKLDRLTN--GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERLLASKSGIN 250 (421)
T ss_pred CCcceeCCChhHHHHhc--CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 35789999999999996 999999999999999999999999998887 6788999999999876622 2233443
Q ss_pred cc-------------------------ceeEeCC--CCHHHHHHHHHHHhhcC-CccEEEEcCccccccccccCCCcCCC
Q 024705 172 AE-------------------------NLLIAQP--DSAENLLSVVDTLTKSG-SIDVIVVDSVAALIPKCEIGVPINGM 223 (264)
Q Consensus 172 ~~-------------------------~l~~~~~--~~~ee~~~~i~~~~~~~-~~~~vvIDsl~~~~~~~~~~~~~~~~ 223 (264)
.. ++++.+. .+++++...++.+.... ++++||||+++.+.+. .+ .
T Consensus 251 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~---~~----~ 323 (421)
T TIGR03600 251 TGNIRTGRFNDSDFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPT---RG----R 323 (421)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCCC---CC----C
Confidence 22 2334333 56888888888776554 7999999999988641 11 1
Q ss_pred CcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 224 YSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 224 ~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
....+...+++.|+.++ ++++++||+++|+++..+.|
T Consensus 324 ~~~~~~~~i~~~Lk~lA---ke~~i~Vi~lsQlnr~~~~r 360 (421)
T TIGR03600 324 DRNEELGGISRGLKALA---KELDVPVVLLAQLNRGSEKR 360 (421)
T ss_pred CHHHHHHHHHHHHHHHH---HHhCCcEEEecccCcchhhc
Confidence 11233334555555555 99999999999999887654
No 31
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.85 E-value=1.6e-20 Score=160.37 Aligned_cols=148 Identities=26% Similarity=0.361 Sum_probs=111.1
Q ss_pred CCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH--HHHHHcCCCcc
Q 024705 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAE 173 (264)
Q Consensus 96 ~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~--~~~~~~g~~~~ 173 (264)
+..+.++||++.||.+++ ||+++|++++|+|+||+|||+|+.+++.+.+.+|++|+|+++|++... ..++++|++..
T Consensus 2 ~~~~~~~tGi~~LD~~l~-gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~ 80 (234)
T PRK06067 2 GKKEIISTGNEELDRKLG-GGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDIS 80 (234)
T ss_pred CCceEEecCCHHHHHhhC-CCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChh
Confidence 346789999999999999 999999999999999999999999999998889999999999988766 34567887765
Q ss_pred ce------eEe---------CCCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHH
Q 024705 174 NL------LIA---------QPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRK 238 (264)
Q Consensus 174 ~l------~~~---------~~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~ 238 (264)
.. .+. .....++++..+...++..++++++||+++.+... . +... +..++..
T Consensus 81 ~~~~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~--~--------~~~~---~~~~l~~ 147 (234)
T PRK06067 81 DFFLWGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATY--A--------EEDD---ILNFLTE 147 (234)
T ss_pred HHHhCCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhc--C--------CHHH---HHHHHHH
Confidence 42 121 12344677777888887789999999999976521 0 0111 2233333
Q ss_pred HHHHHhccCcEEEEEcccch
Q 024705 239 IHYSLCQSHTLIIFLNQVKV 258 (264)
Q Consensus 239 l~~~l~~~g~tVi~i~h~~~ 258 (264)
+. .+++.|+++++++|...
T Consensus 148 l~-~l~~~g~tvllt~~~~~ 166 (234)
T PRK06067 148 AK-NLVDLGKTILITLHPYA 166 (234)
T ss_pred HH-HHHhCCCEEEEEecCCc
Confidence 32 22456899999998654
No 32
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=99.85 E-value=3.4e-20 Score=157.75 Aligned_cols=143 Identities=29% Similarity=0.346 Sum_probs=110.3
Q ss_pred ccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH--HHHHHcCCCccc---
Q 024705 100 VISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAEN--- 174 (264)
Q Consensus 100 ~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~--~~~~~~g~~~~~--- 174 (264)
+++||+++||++++ ||+++|++++|.|+||+|||+|+.+++.+.+.+|++++|++.|++..+ .+++.+|++.++
T Consensus 1 ri~tGi~~LD~~l~-GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~~~~~~g~~~~~~~~ 79 (229)
T TIGR03881 1 RLSTGVEGLDKLLE-GGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIRQAAQFGMDFEKAIE 79 (229)
T ss_pred CcCCChhhHHHhhc-CCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHhCCCHHHHhh
Confidence 37999999999999 999999999999999999999999999888888999999999988765 356678887653
Q ss_pred ---eeEeC-------------CCCHHHHHHHHHHHhhcC--CccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHH
Q 024705 175 ---LLIAQ-------------PDSAENLLSVVDTLTKSG--SIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQAL 236 (264)
Q Consensus 175 ---l~~~~-------------~~~~ee~~~~i~~~~~~~--~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L 236 (264)
+.+.+ ..+.+++...++...+.. ++++++||+++.+.. . ++ .+.+ +.+
T Consensus 80 ~~~l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~-~----~~------~~~r---~~~ 145 (229)
T TIGR03881 80 EGKLVIIDALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWL-D----KP------AMAR---KYS 145 (229)
T ss_pred cCCEEEEEccccccccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhc-c----Ch------HHHH---HHH
Confidence 22221 235677777777776553 578999999999863 1 11 2223 334
Q ss_pred HHHHHHHhccCcEEEEEcccc
Q 024705 237 RKIHYSLCQSHTLIIFLNQVK 257 (264)
Q Consensus 237 ~~l~~~l~~~g~tVi~i~h~~ 257 (264)
..+.+.+++.|+|+|+++|..
T Consensus 146 ~~l~~~l~~~~~tvil~~~~~ 166 (229)
T TIGR03881 146 YYLKRVLNRWNFTILLTSQYA 166 (229)
T ss_pred HHHHHHHHhCCCEEEEEeccc
Confidence 455555588999999999964
No 33
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.85 E-value=2.2e-21 Score=183.15 Aligned_cols=148 Identities=24% Similarity=0.286 Sum_probs=119.1
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH--HHHHHcCCCccc
Q 024705 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAEN 174 (264)
Q Consensus 97 ~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~--~~~~~~g~~~~~ 174 (264)
..+.++||+++||.+++ ||+++|++++|.|+||+|||+|+.+++.+.+..|++++|+++|++..+ ..++.+|++.+.
T Consensus 251 ~~~~~~tGi~~lD~~l~-GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~ 329 (509)
T PRK09302 251 SNERISSGVPDLDEMLG-GGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEK 329 (509)
T ss_pred ccccccCCcHHHHHhhc-CCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHH
Confidence 35689999999999999 999999999999999999999999999999999999999999998776 456778887653
Q ss_pred e------eEeC----CCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHh
Q 024705 175 L------LIAQ----PDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLC 244 (264)
Q Consensus 175 l------~~~~----~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~ 244 (264)
. .+.. ....++.+..+...++..+++++||||++.+..... .. .+.+.+..+...++
T Consensus 330 ~~~~g~l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDslt~l~~~~~----------~~---~~~~~l~~l~~~~k 396 (509)
T PRK09302 330 MEEKGLLKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPLSALARGGS----------LN---EFRQFVIRLTDYLK 396 (509)
T ss_pred HhhcCCceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHHhCC----------HH---HHHHHHHHHHHHHH
Confidence 2 2221 224567777788888778999999999999873110 01 23456777777779
Q ss_pred ccCcEEEEEcccch
Q 024705 245 QSHTLIIFLNQVKV 258 (264)
Q Consensus 245 ~~g~tVi~i~h~~~ 258 (264)
+.|+|+|+++|...
T Consensus 397 ~~~~t~l~t~~~~~ 410 (509)
T PRK09302 397 SEEITGLFTNLTPD 410 (509)
T ss_pred hCCCeEEEEecccc
Confidence 99999999998754
No 34
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=99.85 E-value=3.1e-20 Score=160.94 Aligned_cols=153 Identities=24% Similarity=0.294 Sum_probs=113.4
Q ss_pred ccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhc-CCeEEEEecCCCCCHH----HHHHcCCCcc-
Q 024705 100 VISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVENALDPS----LAEAMGIDAE- 173 (264)
Q Consensus 100 ~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~-g~~v~~~~~e~~~~~~----~~~~~g~~~~- 173 (264)
+++||++.||+++| |+.+|++++|.|+||+|||+|+++++.+++.. +.+|+||+.|++..+. .+...+++..
T Consensus 1 Gi~TG~~~LD~~lg--G~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~~ 78 (259)
T PF03796_consen 1 GIPTGFPALDRLLG--GLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYNK 78 (259)
T ss_dssp SB-SSTHHHHHHHS--SB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHHH
T ss_pred CCCCChHHHHHHhc--CCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhhh
Confidence 58999999999996 99999999999999999999999999999987 5899999999987662 2222343321
Q ss_pred ------------------------ceeEeC--CCCHHHHHHHHHHHhhc-CCccEEEEcCccccccccccCCCcCCCCcH
Q 024705 174 ------------------------NLLIAQ--PDSAENLLSVVDTLTKS-GSIDVIVVDSVAALIPKCEIGVPINGMYSD 226 (264)
Q Consensus 174 ------------------------~l~~~~--~~~~ee~~~~i~~~~~~-~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~ 226 (264)
.+.+.+ ..+.+++...++.+... .++++||||+++.+.+... .....
T Consensus 79 i~~g~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~------~~~~~ 152 (259)
T PF03796_consen 79 IRSGDLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDS------SDNRR 152 (259)
T ss_dssp HHCCGCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCS------SSCCH
T ss_pred hhccccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCC------CCCHH
Confidence 123322 34788888888887766 7899999999998875321 11223
Q ss_pred HHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 227 AQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 227 ~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
.+...+++.|+.++ +++|++||+++|+++..+++
T Consensus 153 ~~~~~i~~~Lk~lA---~~~~i~vi~~sQlnr~~~~~ 186 (259)
T PF03796_consen 153 QEIGEISRELKALA---KELNIPVIALSQLNREAEDR 186 (259)
T ss_dssp HHHHHHHHHHHHHH---HHHTSEEEEEEEBSGGGGGS
T ss_pred HHHHHHHHHHHHHH---HHcCCeEEEccccChhhhcc
Confidence 55555666666666 99999999999999887654
No 35
>PRK06321 replicative DNA helicase; Provisional
Probab=99.84 E-value=1.9e-19 Score=167.37 Aligned_cols=159 Identities=17% Similarity=0.209 Sum_probs=117.4
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHh-hcCCeEEEEecCCCCCHHHHH----HcCCC
Q 024705 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQ-KLGGYCAYLDVENALDPSLAE----AMGID 171 (264)
Q Consensus 97 ~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~-~~g~~v~~~~~e~~~~~~~~~----~~g~~ 171 (264)
...+++||+..||.+++ |+++|++++|+|+||+|||+|+++++.+++ ..|.+|+||+.|++..+...+ ..+++
T Consensus 205 ~~~Gi~tG~~~LD~~t~--Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~Rlla~~s~v~ 282 (472)
T PRK06321 205 MISGIPTHFIDLDKMIN--GFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHRIICSRSEVE 282 (472)
T ss_pred CCCccccCcHHHHHHhc--CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHhhcCCC
Confidence 35689999999999996 999999999999999999999999999987 458899999999987763222 11232
Q ss_pred cc-------------------------ceeEeC--CCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCC
Q 024705 172 AE-------------------------NLLIAQ--PDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMY 224 (264)
Q Consensus 172 ~~-------------------------~l~~~~--~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~ 224 (264)
.. .+++.+ ..+++++...++.+....++++||||+++.+........ .
T Consensus 283 ~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~idd~~~~ti~~i~~~~r~~~~~~~~~lvvIDyLql~~~~~~~~~---~-- 357 (472)
T PRK06321 283 SKKISVGDLSGRDFQRIVSVVNEMQEHTLLIDDQPGLKITDLRARARRMKESYDIQFLIIDYLQLLSGSGNLRN---S-- 357 (472)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHHcCCCCccCC---c--
Confidence 21 123332 346788888888887778899999999998753111100 0
Q ss_pred cHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 225 SDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 225 ~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
+.+..++..+.+.|+.++++.|++||+++|+++.++.|
T Consensus 358 -~~r~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r 395 (472)
T PRK06321 358 -ESRQTEISEISRMLKNLARELNIPILCLSQLSRKVEDR 395 (472)
T ss_pred -chHHHHHHHHHHHHHHHHHHhCCcEEEEeecChhhhcc
Confidence 12223344555555555599999999999999998765
No 36
>PHA02542 41 41 helicase; Provisional
Probab=99.84 E-value=3e-20 Score=172.70 Aligned_cols=160 Identities=16% Similarity=0.169 Sum_probs=117.8
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHH--H--HHHcCCCc
Q 024705 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPS--L--AEAMGIDA 172 (264)
Q Consensus 97 ~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~--~--~~~~g~~~ 172 (264)
...+++||++.||.+++ ||+.+|++++|+|+||+|||+|+++++.+++..|.+|+||+.|++..+. | +...+++.
T Consensus 168 ~~~gi~TG~~~LD~~t~-gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql~~Rl~a~~~~i~~ 246 (473)
T PHA02542 168 KANKIPFKLEILNKITK-GGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVIAKRIDANLLDVSL 246 (473)
T ss_pred CCCccCCCcHHHHHhcc-CCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHcCCCH
Confidence 36789999999999997 8999999999999999999999999999998889999999999988762 1 22234443
Q ss_pred c-----------------------ceeEeC----CCCHHHHHHHHHHHhhcCC--ccEEEEcCccccccccccCCCcCCC
Q 024705 173 E-----------------------NLLIAQ----PDSAENLLSVVDTLTKSGS--IDVIVVDSVAALIPKCEIGVPINGM 223 (264)
Q Consensus 173 ~-----------------------~l~~~~----~~~~ee~~~~i~~~~~~~~--~~~vvIDsl~~~~~~~~~~~~~~~~ 223 (264)
+ ++++.. ..++.++...++++....+ +++||||+++.+.+ ....+.. .
T Consensus 247 ~~l~~l~~~~~~~~~~~~~~~~~~~l~I~~~d~~~lt~~~ir~~~rrlk~~~g~~~dlVvIDYLqL~~~-~~~~~~~--~ 323 (473)
T PHA02542 247 DDIDDLSKAEYKAKMEKLRSKTQGKLIIKQYPTGGAHAGHFRALLNELKLKKNFKPDVIIVDYLGICAS-SRLRVSS--E 323 (473)
T ss_pred HHHhhcCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEechhhccC-CcccCCC--C
Confidence 2 222221 2356788888877764443 89999999998863 1111111 1
Q ss_pred CcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 224 YSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 224 ~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
....+...+++.|+.++ +++|++||+++|+++.++.+
T Consensus 324 nr~~ei~~Isr~LK~lA---kel~vpVi~lsQLnR~~e~r 360 (473)
T PHA02542 324 NSYTYVKAIAEELRGLA---VEHDVVVWTAAQTTRSGWDS 360 (473)
T ss_pred ChHHHHHHHHHHHHHHH---HHhCCeEEEEEeeCcccccc
Confidence 11233444555555555 99999999999999998765
No 37
>PRK08506 replicative DNA helicase; Provisional
Probab=99.84 E-value=1.4e-19 Score=168.87 Aligned_cols=156 Identities=19% Similarity=0.225 Sum_probs=116.9
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHH----HHHcCCCc
Q 024705 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSL----AEAMGIDA 172 (264)
Q Consensus 97 ~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~----~~~~g~~~ 172 (264)
...+++||++.||.+++ |+.+|++++|+|+||+|||+|+++++.+++..|.+|+||+.|++..+.. +...|++.
T Consensus 171 ~~~Gi~TG~~~LD~~~~--G~~~G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql~~Rlla~~s~v~~ 248 (472)
T PRK08506 171 DIIGLDTGFVELNKMTK--GFNKGDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQLMLRMLSAKTSIPL 248 (472)
T ss_pred CCCcccCChHHHHhhcC--CCCCCceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHHHHHHHHHhcCCCH
Confidence 35689999999999985 9999999999999999999999999999988899999999999877622 22223322
Q ss_pred c-------------------------ceeEeC--CCCHHHHHHHHHHHhhc-CCccEEEEcCccccccccccCCCcCCCC
Q 024705 173 E-------------------------NLLIAQ--PDSAENLLSVVDTLTKS-GSIDVIVVDSVAALIPKCEIGVPINGMY 224 (264)
Q Consensus 173 ~-------------------------~l~~~~--~~~~ee~~~~i~~~~~~-~~~~~vvIDsl~~~~~~~~~~~~~~~~~ 224 (264)
+ ++++.+ ..+++++...++.+... +++++||||+++.+...... ..
T Consensus 249 ~~i~~~~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~~~------~~ 322 (472)
T PRK08506 249 QNLRTGDLDDDEWERLSDACDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSGNF------KD 322 (472)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCCCC------CC
Confidence 1 234433 24688888888887654 46899999999977531110 11
Q ss_pred cHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 225 SDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 225 ~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
...+...+++.|+.++ +++|++||+++|+++.++.|
T Consensus 323 r~~ev~~isr~LK~lA---kel~ipVi~lsQLnR~~e~r 358 (472)
T PRK08506 323 RHLQISEISRGLKLLA---RELDIPIIALSQLNRSLESR 358 (472)
T ss_pred HHHHHHHHHHHHHHHH---HHhCCcEEEEeecCcchhhc
Confidence 1233444555565555 99999999999999988754
No 38
>PRK09165 replicative DNA helicase; Provisional
Probab=99.84 E-value=6.9e-20 Score=171.81 Aligned_cols=158 Identities=25% Similarity=0.309 Sum_probs=118.7
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhc---------------CCeEEEEecCCCCC
Q 024705 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL---------------GGYCAYLDVENALD 161 (264)
Q Consensus 97 ~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~---------------g~~v~~~~~e~~~~ 161 (264)
...+++||+++||.++| |+.+|++++|+|+||+|||+|+++++.+++.. |.+|+||+.|++..
T Consensus 196 ~~~gi~TG~~~LD~~~g--G~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ 273 (497)
T PRK09165 196 HLSGISTGLRDLDSKLG--GLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAE 273 (497)
T ss_pred CCCcccCChHHHhhhcC--CCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHH
Confidence 45789999999999996 99999999999999999999999999988753 68899999999987
Q ss_pred HHH----HHHcCCCccc-------------------------eeEeC--CCCHHHHHHHHHHHhhcCCccEEEEcCcccc
Q 024705 162 PSL----AEAMGIDAEN-------------------------LLIAQ--PDSAENLLSVVDTLTKSGSIDVIVVDSVAAL 210 (264)
Q Consensus 162 ~~~----~~~~g~~~~~-------------------------l~~~~--~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~ 210 (264)
+.. +...|++..+ +++.+ ..+++++...++++...+++++||||+++.+
T Consensus 274 ql~~R~la~~s~v~~~~i~~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~~~~~~lvvIDyLqli 353 (497)
T PRK09165 274 QLATRILSEQSEISSSKIRRGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKRQHGLDLLVVDYLQLI 353 (497)
T ss_pred HHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhc
Confidence 732 2333443321 33332 2468889888888877788999999999987
Q ss_pred ccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 211 IPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 211 ~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
..... . . ......+...+++.|+.++ ++.|++||+++|+++.++.|
T Consensus 354 ~~~~~-~--~-~~~r~~ev~~is~~LK~lA---kel~ipVi~lsQLnR~~e~r 399 (497)
T PRK09165 354 RGSSK-R--S-SDNRVQEISEITQGLKALA---KELNIPVIALSQLSRQVEQR 399 (497)
T ss_pred cCCCC-C--C-CCchHHHHHHHHHHHHHHH---HHhCCeEEEeecccchhhcc
Confidence 63111 0 0 1111234455555555555 99999999999999998764
No 39
>PRK08760 replicative DNA helicase; Provisional
Probab=99.83 E-value=1.6e-19 Score=168.42 Aligned_cols=156 Identities=21% Similarity=0.214 Sum_probs=116.6
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhh-cCCeEEEEecCCCCCHHHHHH----cCCC
Q 024705 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAYLDVENALDPSLAEA----MGID 171 (264)
Q Consensus 97 ~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~-~g~~v~~~~~e~~~~~~~~~~----~g~~ 171 (264)
...+++||++.||.+++ |+.+|++++|+|+||+|||+|+++++.+++. .|.+|+||+.|++..+...+. -+++
T Consensus 208 ~~~Gi~TG~~~LD~~t~--G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~Rl~a~~s~i~ 285 (476)
T PRK08760 208 NITGLPTGYNDFDAMTA--GLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLISSNGRIN 285 (476)
T ss_pred CCCcccCCcHHHHHHhc--CCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHHHHHhhCCCc
Confidence 45689999999999986 8999999999999999999999999998875 488999999999877622111 1222
Q ss_pred cc-------------------------ceeEeCC--CCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCC
Q 024705 172 AE-------------------------NLLIAQP--DSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMY 224 (264)
Q Consensus 172 ~~-------------------------~l~~~~~--~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~ 224 (264)
.. ++++.+. .+++++...++.+....++++||||+++.+..... ...
T Consensus 286 ~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~~~~~~lVvIDyLql~~~~~~------~~~ 359 (476)
T PRK08760 286 AQRLRTGALEDEDWARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDYLQLMSVPGN------SEN 359 (476)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecHHhcCCCCC------Ccc
Confidence 11 2333332 46888988888888778899999999997752111 011
Q ss_pred cHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 225 SDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 225 ~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
...+...+++.|+.++ ++++++||+++|+++.++.|
T Consensus 360 r~~ei~~Isr~LK~lA---kel~ipVi~lsQLnR~~e~r 395 (476)
T PRK08760 360 RATEISEISRSLKGLA---KELNVPVIALSQLNRSLETR 395 (476)
T ss_pred cHHHHHHHHHHHHHHH---HHhCCEEEEeeccCcccccc
Confidence 2234445555566555 99999999999999988754
No 40
>PRK05595 replicative DNA helicase; Provisional
Probab=99.83 E-value=2.8e-19 Score=166.09 Aligned_cols=156 Identities=19% Similarity=0.250 Sum_probs=116.4
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHh-hcCCeEEEEecCCCCCHHH----HHHcCCC
Q 024705 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQ-KLGGYCAYLDVENALDPSL----AEAMGID 171 (264)
Q Consensus 97 ~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~-~~g~~v~~~~~e~~~~~~~----~~~~g~~ 171 (264)
...+++||++.||.+++ |+.+|++++|+|+||+|||+|+++++.+++ ..|.+|+||+.|++..+.. +...+++
T Consensus 180 ~~~gi~tg~~~ld~~~~--G~~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~~~l~~R~~a~~~~v~ 257 (444)
T PRK05595 180 ETTGVASGFRELDAKTS--GFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSKEQLAYKLLCSEANVD 257 (444)
T ss_pred CCCcccCChHHHHHhcC--CCCCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCHHHHHHHHHHHhcCCC
Confidence 35689999999999985 999999999999999999999999998765 5688999999999876621 2223333
Q ss_pred cc-------------------------ceeEeC--CCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCC
Q 024705 172 AE-------------------------NLLIAQ--PDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMY 224 (264)
Q Consensus 172 ~~-------------------------~l~~~~--~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~ 224 (264)
.. ++++.+ ..+++++...++.+....++++||||+++.+..... ...
T Consensus 258 ~~~~~~~~l~~~e~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~vvIDylql~~~~~~------~~~ 331 (444)
T PRK05595 258 MLRLRTGNLEDKDWENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKIEHGIDMILIDYLQLMSGGKG------SES 331 (444)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEeHHHhccCCCC------Ccc
Confidence 22 233333 245788888888887777899999999998753111 111
Q ss_pred cHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 225 SDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 225 ~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
...+...+++.|+.++ ++.|++||+++|+++..++|
T Consensus 332 r~~~v~~is~~LK~lA---ke~~i~vi~lsQLnR~~e~r 367 (444)
T PRK05595 332 RQQEVSEISRSIKALA---KEMECPVIALSQLSRAPEQR 367 (444)
T ss_pred HHHHHHHHHHHHHHHH---HHhCCeEEEeeccCcchhcc
Confidence 2233444555555555 99999999999999988764
No 41
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=99.83 E-value=2.9e-19 Score=165.69 Aligned_cols=155 Identities=18% Similarity=0.234 Sum_probs=114.3
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhh-cCCeEEEEecCCCCCHHH----HHHcCCC
Q 024705 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAYLDVENALDPSL----AEAMGID 171 (264)
Q Consensus 97 ~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~-~g~~v~~~~~e~~~~~~~----~~~~g~~ 171 (264)
...+++||++.||.+++ |+++|++++|.|+||+|||+|+++++.+++. .|.+|+||+.|++..+.. +...+++
T Consensus 174 ~~~gi~tG~~~LD~~~~--G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~R~~~~~~~v~ 251 (434)
T TIGR00665 174 GITGVPTGFTDLDKLTS--GLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAMRMLSSESRVD 251 (434)
T ss_pred CCCcccCCchhhHhhcC--CCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHHHHHHHhcCCC
Confidence 46789999999999985 9999999999999999999999999998775 588999999999877622 1112332
Q ss_pred cc-------------------------ceeEeC--CCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCC
Q 024705 172 AE-------------------------NLLIAQ--PDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMY 224 (264)
Q Consensus 172 ~~-------------------------~l~~~~--~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~ 224 (264)
.. .+++.+ ..+++++...++.+....++++||||+++.+..... . ..
T Consensus 252 ~~~~~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~i~~~~~--~----~~ 325 (434)
T TIGR00665 252 SQKLRTGKLSDEDWEKLTSAAGKLSEAPLYIDDTPGLTITELRAKARRLKREHGLGLIVIDYLQLMSGSGR--S----EN 325 (434)
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcCCCCC--C----CC
Confidence 11 223322 246788888888888778899999999998753111 0 11
Q ss_pred cHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhh
Q 024705 225 SDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLK 262 (264)
Q Consensus 225 ~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~ 262 (264)
...+...+++.|+. .++++|++||+++|+++..+.
T Consensus 326 r~~~i~~i~~~Lk~---lA~e~~i~vi~lsqlnr~~~~ 360 (434)
T TIGR00665 326 RQQEVSEISRSLKA---LAKELNVPVIALSQLSRSVEQ 360 (434)
T ss_pred HHHHHHHHHHHHHH---HHHHhCCeEEEEeccCcchhc
Confidence 11223334444444 459999999999999987654
No 42
>PRK05748 replicative DNA helicase; Provisional
Probab=99.83 E-value=4.4e-19 Score=165.03 Aligned_cols=157 Identities=17% Similarity=0.204 Sum_probs=115.5
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhh-cCCeEEEEecCCCCCHHHHHH----cCCC
Q 024705 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAYLDVENALDPSLAEA----MGID 171 (264)
Q Consensus 97 ~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~-~g~~v~~~~~e~~~~~~~~~~----~g~~ 171 (264)
...+++||++.||.+++ |+++|++++|+|+||+|||+|+++++.+++. .|.+|+||+.|++..+...+. -+++
T Consensus 182 ~~~gi~TG~~~LD~~~~--G~~~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~l~~R~l~~~~~v~ 259 (448)
T PRK05748 182 DITGIPTGFTDLDKMTS--GLQPNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESLVMRMLCAEGNID 259 (448)
T ss_pred CCCCccCChHHHHHhcC--CCCCCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHhcCCC
Confidence 45789999999999985 9999999999999999999999999998774 588999999999887632221 1222
Q ss_pred cc-------------------------ceeEeC--CCCHHHHHHHHHHHhhcC-CccEEEEcCccccccccccCCCcCCC
Q 024705 172 AE-------------------------NLLIAQ--PDSAENLLSVVDTLTKSG-SIDVIVVDSVAALIPKCEIGVPINGM 223 (264)
Q Consensus 172 ~~-------------------------~l~~~~--~~~~ee~~~~i~~~~~~~-~~~~vvIDsl~~~~~~~~~~~~~~~~ 223 (264)
.. ++++.+ ..+++++...++.+.... ++++||||+++.+... . ..++
T Consensus 260 ~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~-~---~~~~- 334 (448)
T PRK05748 260 AQRLRTGQLTDDDWPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGS-G---RSGE- 334 (448)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCC-C---CCCc-
Confidence 11 223322 246788888888887765 7999999999988531 1 1101
Q ss_pred CcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 224 YSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 224 ~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
....++....+.|+..++++|++||+++|+++.++.|
T Consensus 335 ---~r~~~i~~i~~~LK~lAke~~i~vi~lsQlnr~~~~r 371 (448)
T PRK05748 335 ---NRQQEVSEISRSLKALAKELKVPVIALSQLSRGVEQR 371 (448)
T ss_pred ---CHHHHHHHHHHHHHHHHHHhCCeEEEecccChhHhhc
Confidence 1222344444555555599999999999999987654
No 43
>PRK08006 replicative DNA helicase; Provisional
Probab=99.82 E-value=3.2e-19 Score=165.97 Aligned_cols=156 Identities=15% Similarity=0.190 Sum_probs=115.4
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhh-cCCeEEEEecCCCCCHHHHHH----cCCC
Q 024705 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAYLDVENALDPSLAEA----MGID 171 (264)
Q Consensus 97 ~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~-~g~~v~~~~~e~~~~~~~~~~----~g~~ 171 (264)
...+++||+++||.+++ |+.+|++++|+|+||+|||+|+++++.+++. .|.+|+||+.|++..+...+. .+++
T Consensus 203 ~~~Gi~TG~~~LD~~~~--Gl~~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~~ql~~Rlla~~~~v~ 280 (471)
T PRK08006 203 GVTGVNTGYDDLNKKTA--GLQPSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMRMLASLSRVD 280 (471)
T ss_pred CCCcccCCCHHHHHhhc--CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHHhcCCC
Confidence 35689999999999985 9999999999999999999999999999874 588999999999876522111 1111
Q ss_pred c--------------------------cceeEeC--CCCHHHHHHHHHHHhhcC-CccEEEEcCccccccccccCCCcCC
Q 024705 172 A--------------------------ENLLIAQ--PDSAENLLSVVDTLTKSG-SIDVIVVDSVAALIPKCEIGVPING 222 (264)
Q Consensus 172 ~--------------------------~~l~~~~--~~~~ee~~~~i~~~~~~~-~~~~vvIDsl~~~~~~~~~~~~~~~ 222 (264)
. .++++.+ ..++.++...++++...+ ++++||||+++.+..... .
T Consensus 281 ~~~i~~~~l~~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~------~ 354 (471)
T PRK08006 281 QTRIRTGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSL------S 354 (471)
T ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCC------C
Confidence 1 1234433 246888888888876654 699999999998753111 0
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 223 MYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 223 ~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
.....+...+++.|+.++ ++.|++||+++|+++.++.|
T Consensus 355 ~~r~~ei~~isr~LK~lA---kel~ipVi~LsQLnR~~e~r 392 (471)
T PRK08006 355 DNRTLEIAEISRSLKALA---KELQVPVVALSQLNRSLEQR 392 (471)
T ss_pred CCcHHHHHHHHHHHHHHH---HHhCCeEEEEEecCcccccc
Confidence 111233444555555555 99999999999999988765
No 44
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=99.82 E-value=1.1e-19 Score=170.25 Aligned_cols=148 Identities=18% Similarity=0.208 Sum_probs=112.1
Q ss_pred CccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhc-CCeEEEEecCCCCCH--HHHHHcCCCccc-
Q 024705 99 PVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVENALDP--SLAEAMGIDAEN- 174 (264)
Q Consensus 99 ~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~-g~~v~~~~~e~~~~~--~~~~~~g~~~~~- 174 (264)
++++||++.||.+++ ||+++|++++|.|+||+|||||+.+++.+.+.+ |++++|+++|++..+ ..++++|++.+.
T Consensus 1 ~r~~TGI~gLD~il~-GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~ 79 (484)
T TIGR02655 1 AKIRTMIEGFDDISH-GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKL 79 (484)
T ss_pred CcCCCCchhHHHhcC-CCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHH
Confidence 358999999999999 999999999999999999999999999887666 899999999988877 467789998763
Q ss_pred -----eeEeC------------CCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHH
Q 024705 175 -----LLIAQ------------PDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALR 237 (264)
Q Consensus 175 -----l~~~~------------~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~ 237 (264)
+.+.+ ....++++..+...+..++++.|+||++..+....+ .. .... +.+.
T Consensus 80 ~~~g~l~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~--~~------~~~r----~~l~ 147 (484)
T TIGR02655 80 VDEGKLFILDASPDPEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVFQQYD--AV------SVVR----REIF 147 (484)
T ss_pred hhcCceEEEecCchhccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhhhhcC--ch------HHHH----HHHH
Confidence 33322 124456666666777778999999999998763111 10 0122 2333
Q ss_pred HHHHHHhccCcEEEEEcccchH
Q 024705 238 KIHYSLCQSHTLIIFLNQVKVL 259 (264)
Q Consensus 238 ~l~~~l~~~g~tVi~i~h~~~~ 259 (264)
++...+++.|+|+|+++|..+.
T Consensus 148 ~Li~~L~~~g~TvLLtsh~~~~ 169 (484)
T TIGR02655 148 RLVARLKQIGVTTVMTTERIEE 169 (484)
T ss_pred HHHHHHHHCCCEEEEEecCccc
Confidence 4444447789999999997653
No 45
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=99.81 E-value=2.1e-19 Score=156.50 Aligned_cols=154 Identities=14% Similarity=0.169 Sum_probs=112.9
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhc-CCeEEEEecCCCCCHH--H--HHHcCCC
Q 024705 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVENALDPS--L--AEAMGID 171 (264)
Q Consensus 97 ~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~-g~~v~~~~~e~~~~~~--~--~~~~g~~ 171 (264)
+.++++||++.||.++| |+++|++++|.|+||+|||+|+.+++.+++.. |.+|+|++.|+..... + +...|++
T Consensus 9 ~~~~~~tg~~~Ld~~~g--G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~~~~~~~~ 86 (271)
T cd01122 9 SNEEVWWPFPVLNKLTK--GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLLGQYAGKR 86 (271)
T ss_pred cccCCCCCcceeeeeeE--EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHHHHHhCCC
Confidence 34589999999999985 99999999999999999999999999998877 9999999999976552 1 1112332
Q ss_pred cc------------------------ceeEeCC---CCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCC
Q 024705 172 AE------------------------NLLIAQP---DSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMY 224 (264)
Q Consensus 172 ~~------------------------~l~~~~~---~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~ 224 (264)
.. .+.++.. .+.+++...++.++...++++||||+++.+..... .. .
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~-~~----~- 160 (271)
T cd01122 87 LHLPDTVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDER-AS----G- 160 (271)
T ss_pred cccCCccccccHHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHHhcCCceEEEECCHHHHhccCC-Cc----h-
Confidence 21 2333332 25778888888887778999999999999874210 00 0
Q ss_pred cHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHh
Q 024705 225 SDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLL 260 (264)
Q Consensus 225 ~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~ 260 (264)
.....+...+..|...++++|++|++++|.++..
T Consensus 161 --~~~~~~~~~~~~L~~la~~~~vtvll~sq~~~~~ 194 (271)
T cd01122 161 --DERKALDEIMTKLRGFATEHGIHITLVSHLRRPD 194 (271)
T ss_pred --hHHHHHHHHHHHHHHHHHHhCCEEEEEecccCcc
Confidence 1122233445555555599999999999998643
No 46
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=99.81 E-value=2e-19 Score=169.94 Aligned_cols=150 Identities=23% Similarity=0.282 Sum_probs=116.5
Q ss_pred CCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhc-CCeEEEEecCCCCCH--HHHHHcCCCc
Q 024705 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVENALDP--SLAEAMGIDA 172 (264)
Q Consensus 96 ~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~-g~~v~~~~~e~~~~~--~~~~~~g~~~ 172 (264)
...++++||++.||.+++ ||+++|++++|.|+||+|||+|+.+++.+.+.+ |++|+|+++|++..+ ..+..+|++.
T Consensus 8 ~~~~ri~TGI~~LD~~l~-GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~ 86 (509)
T PRK09302 8 PGIEKLPTGIEGFDDITH-GGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDL 86 (509)
T ss_pred CCCccccCCchhHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCH
Confidence 356799999999999999 999999999999999999999999999988877 999999999998887 4566788876
Q ss_pred cc------eeEeC------------CCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHH
Q 024705 173 EN------LLIAQ------------PDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQ 234 (264)
Q Consensus 173 ~~------l~~~~------------~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~ 234 (264)
.+ +.+.. ..+.+++...+...+...+++.+||||++.+... .+. ..+ +..
T Consensus 87 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~--~d~-------~~~---~r~ 154 (509)
T PRK09302 87 QKLIDEGKLFILDASPDPSEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSG--FSN-------EAV---VRR 154 (509)
T ss_pred HHHhhCCeEEEEecCcccccccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhh--ccC-------HHH---HHH
Confidence 54 22221 1234567777777777789999999999987631 111 122 224
Q ss_pred HHHHHHHHHhccCcEEEEEcccch
Q 024705 235 ALRKIHYSLCQSHTLIIFLNQVKV 258 (264)
Q Consensus 235 ~L~~l~~~l~~~g~tVi~i~h~~~ 258 (264)
.+.++.+.+++.|+|+|+++|...
T Consensus 155 ~l~~L~~~Lk~~g~TvLlt~~~~~ 178 (509)
T PRK09302 155 ELRRLFAWLKQKGVTAVITGERGD 178 (509)
T ss_pred HHHHHHHHHHhCCCEEEEEECCcc
Confidence 455565666888999999999754
No 47
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=99.81 E-value=5.8e-19 Score=149.75 Aligned_cols=141 Identities=25% Similarity=0.391 Sum_probs=104.9
Q ss_pred CcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH--HHHHHcCCCccc-----ee
Q 024705 104 GSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAEN-----LL 176 (264)
Q Consensus 104 G~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~--~~~~~~g~~~~~-----l~ 176 (264)
|+++||++++ ||+++|++++|.|+||+|||+|+.+++.+.+.+|++|+|+++|++..+ .++..+|++.+. +.
T Consensus 1 Gi~~LD~~l~-gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~ 79 (224)
T TIGR03880 1 GIPGLDEMLG-GGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLY 79 (224)
T ss_pred CchhhHHHhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeE
Confidence 7899999999 999999999999999999999999999999889999999999998776 456678876543 34
Q ss_pred EeCCCC------HHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEE
Q 024705 177 IAQPDS------AENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLI 250 (264)
Q Consensus 177 ~~~~~~------~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tV 250 (264)
+.+..+ ..++...+...++..+++++||||++.+.+. ..+ .....+ .+.++.+.+++.|+|+
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~vVIDsls~l~~~--~~~------~~~~r~----~l~~l~~~lk~~~~tv 147 (224)
T TIGR03880 80 IVRLDPSDFKTSLNRIKNELPILIKELGASRVVIDPISLLETL--FDD------DAERRT----ELFRFYSSLRETGVTT 147 (224)
T ss_pred EEecCHHHHHhhHHHHHHHHHHHHHHhCCCEEEEcChHHHhhh--cCC------HHHHHH----HHHHHHHHHHhCCCEE
Confidence 443221 3344455566666778999999999987421 111 112222 3344444447889999
Q ss_pred EEEcccc
Q 024705 251 IFLNQVK 257 (264)
Q Consensus 251 i~i~h~~ 257 (264)
++++|..
T Consensus 148 ll~s~~~ 154 (224)
T TIGR03880 148 ILTSEAD 154 (224)
T ss_pred EEEEccc
Confidence 9999975
No 48
>PRK05636 replicative DNA helicase; Provisional
Probab=99.81 E-value=6.5e-19 Score=164.97 Aligned_cols=156 Identities=18% Similarity=0.214 Sum_probs=115.8
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHh-hcCCeEEEEecCCCCCHHHHH----HcCCC
Q 024705 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQ-KLGGYCAYLDVENALDPSLAE----AMGID 171 (264)
Q Consensus 97 ~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~-~~g~~v~~~~~e~~~~~~~~~----~~g~~ 171 (264)
...+++||+..||.+++ |+.+|++++|+|+||+|||+|+++++.+++ ..+.+|+||+.|++..+...+ ..+++
T Consensus 244 ~~~Gi~TG~~~LD~~t~--Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~ls~~s~v~ 321 (505)
T PRK05636 244 IATGIPTGFKDLDDLTN--GLRGGQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRLLSAEAEVR 321 (505)
T ss_pred CCCceecChHHHhhhcC--CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHHHHHHhcCCC
Confidence 35689999999999875 999999999999999999999999998876 457899999999987662211 11221
Q ss_pred c-------------------------cceeEeC--CCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCC
Q 024705 172 A-------------------------ENLLIAQ--PDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMY 224 (264)
Q Consensus 172 ~-------------------------~~l~~~~--~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~ 224 (264)
. .++++.+ ..++.++...++.+....++++||||+++.+.+.... .
T Consensus 322 ~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~~~~lvvIDYLql~~~~~~~------~- 394 (505)
T PRK05636 322 LSDMRGGKMDEDAWEKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQKHDLKLIVVDYLQLMSSGKRV------E- 394 (505)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcCCCCCC------C-
Confidence 1 1234433 2467888888888877788999999999987531110 1
Q ss_pred cHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 225 SDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 225 ~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
....++..+.+.|+.++++.+|+||+++|+++.+++|
T Consensus 395 --~r~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~r 431 (505)
T PRK05636 395 --SRQQEVSEFSRQLKLLAKELDVPLIAISQLNRGPESR 431 (505)
T ss_pred --cHHHHHHHHHHHHHHHHHHhCCeEEEEeecCcccccc
Confidence 1223344455555555599999999999999988765
No 49
>PRK08840 replicative DNA helicase; Provisional
Probab=99.80 E-value=1.3e-18 Score=161.54 Aligned_cols=156 Identities=15% Similarity=0.204 Sum_probs=113.9
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhh-cCCeEEEEecCCCCCHHHH----HHcCCC
Q 024705 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAYLDVENALDPSLA----EAMGID 171 (264)
Q Consensus 97 ~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~-~g~~v~~~~~e~~~~~~~~----~~~g~~ 171 (264)
...+++||++.||.+++ |+.+|++++|+|+||+|||+|+++++.+++. .|.+|+||+.|++..+... ..-+++
T Consensus 196 ~~~gi~TG~~~LD~~~~--G~~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~~ql~~Rlla~~s~v~ 273 (464)
T PRK08840 196 GVTGVDTGFTDLNKKTA--GLQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQLMMRMLASLSRVD 273 (464)
T ss_pred CCCCcCCCcHHHHHhhc--CCCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHhhCCCC
Confidence 45789999999999996 8999999999999999999999999999874 5889999999998766221 111221
Q ss_pred c--------------------------cceeEeC--CCCHHHHHHHHHHHhhcC-CccEEEEcCccccccccccCCCcCC
Q 024705 172 A--------------------------ENLLIAQ--PDSAENLLSVVDTLTKSG-SIDVIVVDSVAALIPKCEIGVPING 222 (264)
Q Consensus 172 ~--------------------------~~l~~~~--~~~~ee~~~~i~~~~~~~-~~~~vvIDsl~~~~~~~~~~~~~~~ 222 (264)
. .++++.+ ..++.++...++.+.... ++++||||+++.+..... .
T Consensus 274 ~~~i~~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~~~~------~ 347 (464)
T PRK08840 274 QTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMRVPAL------S 347 (464)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCCCCC------C
Confidence 1 1234433 246788888888776554 589999999998753111 0
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 223 MYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 223 ~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
.....+...+++.|+.+ +++.|++||+++|+++.++.|
T Consensus 348 ~~r~~ei~~isr~LK~l---Akel~ipVi~LsQLnR~~e~r 385 (464)
T PRK08840 348 DNRTLEIAEISRSLKAL---AKELNVPVVALSQLNRSLEQR 385 (464)
T ss_pred CchHHHHHHHHHHHHHH---HHHhCCeEEEEEecCcccccc
Confidence 11112333444455555 499999999999999988765
No 50
>PRK06904 replicative DNA helicase; Validated
Probab=99.80 E-value=1.1e-18 Score=162.59 Aligned_cols=156 Identities=18% Similarity=0.231 Sum_probs=115.0
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhh-cCCeEEEEecCCCCCHHHHH----HcCCC
Q 024705 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAYLDVENALDPSLAE----AMGID 171 (264)
Q Consensus 97 ~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~-~g~~v~~~~~e~~~~~~~~~----~~g~~ 171 (264)
...+++||++.||.+++ |+.+|++++|+|+||+|||+|+++++.+++. .|.+|+||+.|++..+...+ .-+++
T Consensus 200 ~~~Gi~TG~~~LD~~t~--Gl~~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~~ql~~Rlla~~s~v~ 277 (472)
T PRK06904 200 GVTGVTTGFTDLDKKTA--GLQPSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIMMRMLASLSRVD 277 (472)
T ss_pred CCCCccCChHHHHHHHh--ccCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHhhCCCC
Confidence 45789999999999985 9999999999999999999999999998875 58899999999987662211 11111
Q ss_pred c---------------------------cceeEeC--CCCHHHHHHHHHHHhhc-CCccEEEEcCccccccccccCCCcC
Q 024705 172 A---------------------------ENLLIAQ--PDSAENLLSVVDTLTKS-GSIDVIVVDSVAALIPKCEIGVPIN 221 (264)
Q Consensus 172 ~---------------------------~~l~~~~--~~~~ee~~~~i~~~~~~-~~~~~vvIDsl~~~~~~~~~~~~~~ 221 (264)
. .++++.+ ..++.++...++.+... +++++||||+++.+... ..
T Consensus 278 ~~~i~~g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~-~~----- 351 (472)
T PRK06904 278 QTKIRTGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAP-GF----- 351 (472)
T ss_pred HHHhccCCCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCC-CC-----
Confidence 1 1244433 24678888888777654 36899999999977531 11
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 222 GMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 222 ~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
......+...+++.|+.++ ++.|++||+++|+++.++.|
T Consensus 352 ~~~r~~ei~~isr~LK~lA---kel~ipVi~lsQLnR~~e~r 390 (472)
T PRK06904 352 EDNRTLEIAEISRSLKALA---KELKVPVVALSQLNRTLENR 390 (472)
T ss_pred CCcHHHHHHHHHHHHHHHH---HHhCCeEEEEEecCchhhcc
Confidence 0112233444555555555 99999999999999988765
No 51
>PRK07004 replicative DNA helicase; Provisional
Probab=99.80 E-value=1.2e-18 Score=162.01 Aligned_cols=156 Identities=17% Similarity=0.224 Sum_probs=114.7
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHh-hcCCeEEEEecCCCCCHHHHHHc----CCC
Q 024705 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQ-KLGGYCAYLDVENALDPSLAEAM----GID 171 (264)
Q Consensus 97 ~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~-~~g~~v~~~~~e~~~~~~~~~~~----g~~ 171 (264)
...+++||++.||++++ |+.+|++++|+|+||+|||+|+++++.+++ ..|.+|+||+.|++..+...+.+ +++
T Consensus 192 ~~~gi~TG~~~LD~~t~--G~~~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql~~R~la~~~~v~ 269 (460)
T PRK07004 192 DVTGTPTGFVDLDRMTS--GMHGGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLAMRMLGSVGRLD 269 (460)
T ss_pred CCCCccCCcHHhccccc--CCCCCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhhcCCC
Confidence 35689999999999986 999999999999999999999999998876 46889999999999876322211 222
Q ss_pred cc-------------------------ceeEeC--CCCHHHHHHHHHHHhhcC-CccEEEEcCccccccccccCCCcCCC
Q 024705 172 AE-------------------------NLLIAQ--PDSAENLLSVVDTLTKSG-SIDVIVVDSVAALIPKCEIGVPINGM 223 (264)
Q Consensus 172 ~~-------------------------~l~~~~--~~~~ee~~~~i~~~~~~~-~~~~vvIDsl~~~~~~~~~~~~~~~~ 223 (264)
.+ ++++.+ ..++.++...++++.... ++++||||+++.+..... . .
T Consensus 270 ~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~~-----~-~ 343 (460)
T PRK07004 270 QHRMRTGRLTDEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQ-----G-E 343 (460)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCCC-----C-C
Confidence 11 233332 236778888888776654 589999999998863211 1 1
Q ss_pred CcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 224 YSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 224 ~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
....++....+.|+.++++.+|+||+++|+++.++.|
T Consensus 344 ---~r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r 380 (460)
T PRK07004 344 ---NRATEISEISRSLKSLAKELDVPVIALSQLNRGLEQR 380 (460)
T ss_pred ---cHHHHHHHHHHHHHHHHHHhCCeEEEEeccChhhhcc
Confidence 1223344445555555599999999999999988764
No 52
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=99.79 E-value=2e-18 Score=147.80 Aligned_cols=143 Identities=22% Similarity=0.285 Sum_probs=105.0
Q ss_pred HHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhc-CCeEEEEecCCCCCHHH----HHHcCCCcc--------
Q 024705 107 KLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVENALDPSL----AEAMGIDAE-------- 173 (264)
Q Consensus 107 ~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~-g~~v~~~~~e~~~~~~~----~~~~g~~~~-------- 173 (264)
+||.+++ |+++|++++|+|+||+|||+|+.+++.+++.. |.+++||+.|++....+ +...|++..
T Consensus 2 ~LD~~~~--Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 79 (242)
T cd00984 2 DLDNLTG--GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLASESGISLSKLRTGSLS 79 (242)
T ss_pred chhhhhc--CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHHHHhcCCCHHHHhcCCCC
Confidence 5899996 99999999999999999999999999999887 99999999999876522 223344322
Q ss_pred -----------------ceeEe--CCCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHH
Q 024705 174 -----------------NLLIA--QPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQ 234 (264)
Q Consensus 174 -----------------~l~~~--~~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~ 234 (264)
++.+. ...+.+++...++.+....++++||||+++.+.... . ........ ..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~--~----~~~~~~~~---~~ 150 (242)
T cd00984 80 DEDWERLAEAIGELKELPIYIDDSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSK--K----KGNRQQEV---AE 150 (242)
T ss_pred HHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCchhcCCCC--C----CCCHHHHH---HH
Confidence 12222 234678888888888777899999999999876321 0 01111233 34
Q ss_pred HHHHHHHHHhccCcEEEEEcccchHh
Q 024705 235 ALRKIHYSLCQSHTLIIFLNQVKVLL 260 (264)
Q Consensus 235 ~L~~l~~~l~~~g~tVi~i~h~~~~~ 260 (264)
.+..|...++++|+++|+++|.++..
T Consensus 151 ~~~~L~~la~~~~~~ii~~~q~~r~~ 176 (242)
T cd00984 151 ISRSLKLLAKELNVPVIALSQLSRGV 176 (242)
T ss_pred HHHHHHHHHHHhCCeEEEecccChhh
Confidence 44444445599999999999998754
No 53
>PRK06749 replicative DNA helicase; Provisional
Probab=99.78 E-value=2.9e-18 Score=158.05 Aligned_cols=157 Identities=18% Similarity=0.174 Sum_probs=113.3
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHH----cCCCc
Q 024705 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEA----MGIDA 172 (264)
Q Consensus 97 ~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~----~g~~~ 172 (264)
...+++||++.||.+++ |+.+|++++|+|+||+|||+|+++++.+++..|.+|+||+.|++..+...+. .+++.
T Consensus 165 ~~~Gi~TG~~~LD~~t~--Gl~~G~LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEMs~~ql~~R~ls~~~~i~~ 242 (428)
T PRK06749 165 EITGIETGYTSLNKMTC--GLQEGDFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMSSKQLLKRMASCVGEVSG 242 (428)
T ss_pred CCCCccCCcHHHHHHhC--CCCCCcEEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHhccCCCH
Confidence 45789999999999985 9999999999999999999999999999998888999999999877622111 12221
Q ss_pred c---------------------------ceeEeC--CCCHHHHHHHHHHHhhcCC--ccEEEEcCccccccccccCCCcC
Q 024705 173 E---------------------------NLLIAQ--PDSAENLLSVVDTLTKSGS--IDVIVVDSVAALIPKCEIGVPIN 221 (264)
Q Consensus 173 ~---------------------------~l~~~~--~~~~ee~~~~i~~~~~~~~--~~~vvIDsl~~~~~~~~~~~~~~ 221 (264)
. ++++.+ ..+..++...++.+....+ ..+||||+++.+..... ..
T Consensus 243 ~~l~~~~~~l~~~e~~~~~~a~~~l~~~~i~i~d~~~~t~~~I~~~~r~~~~~~~~~~~lvvIDyLqli~~~~~----~~ 318 (428)
T PRK06749 243 GRLKNPKHRFAMEDWEKVSKAFAEIGELPLEIYDNAGVTVQDIWMQTRKLKRKHGDKKILIIVDYLQLITGDPK----HK 318 (428)
T ss_pred HHHhcCcccCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeChhhcCCCCC----CC
Confidence 1 123333 2357788887887766544 55999999997753111 00
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 222 GMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 222 ~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
.....+...+++.|+.+ +++.+|+||+++|+++.++.|
T Consensus 319 -~~r~~ei~~isr~LK~l---Akel~vpVi~lsQLnR~~e~r 356 (428)
T PRK06749 319 -GNRFQEISEISRKLKLL---ARELNVCVVALSQLSRSVESR 356 (428)
T ss_pred -CCHHHHHHHHHHHHHHH---HHHhCCeEEEEEecCcccccc
Confidence 11112333344455555 499999999999999988765
No 54
>PRK07773 replicative DNA helicase; Validated
Probab=99.77 E-value=5.5e-18 Score=168.93 Aligned_cols=156 Identities=16% Similarity=0.203 Sum_probs=116.5
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhc-CCeEEEEecCCCCCHHHHH----HcCCC
Q 024705 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVENALDPSLAE----AMGID 171 (264)
Q Consensus 97 ~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~-g~~v~~~~~e~~~~~~~~~----~~g~~ 171 (264)
...+++||++.||.+++ |+++|++++|+|+||+|||+|+++++.+++.. +.+|+||+.|++..+...+ ..+++
T Consensus 196 ~~~Gi~TG~~~LD~l~~--Gl~~G~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~~R~~s~~~~i~ 273 (886)
T PRK07773 196 LARGVPTGFTELDAMTN--GLHPGQLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLVMRLLSAEAKIK 273 (886)
T ss_pred CCCCccCChhHhccccC--CCCCCcEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHhcCCC
Confidence 46789999999999885 99999999999999999999999999998754 7899999999998763221 12332
Q ss_pred cc-------------------------ceeEeC--CCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCC
Q 024705 172 AE-------------------------NLLIAQ--PDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMY 224 (264)
Q Consensus 172 ~~-------------------------~l~~~~--~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~ 224 (264)
.+ ++++.+ ..+++++...++.+....++++||||+++.+... . . ..
T Consensus 274 ~~~i~~g~l~~~~~~~~~~a~~~l~~~~i~i~d~~~~~i~~i~~~~r~~~~~~~~~lvvIDyLql~~~~-~---~--~~- 346 (886)
T PRK07773 274 LSDMRSGRMSDDDWTRLARAMGEISEAPIFIDDTPNLTVMEIRAKARRLRQEANLGLIVVDYLQLMTSG-K---K--YE- 346 (886)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchhhcCCC-C---C--CC-
Confidence 21 223322 2467888888888877788999999999987531 1 0 01
Q ss_pred cHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 225 SDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 225 ~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
....++..+.+.|+.++++.|++||+++|+++.++.|
T Consensus 347 --~r~~ei~~isr~LK~lAkel~vpvi~lsQLnR~~e~r 383 (886)
T PRK07773 347 --NRQQEVSEISRHLKLLAKELEVPVVALSQLSRGVEQR 383 (886)
T ss_pred --CHHHHHHHHHHHHHHHHHHHCCcEEEecccCcchhcc
Confidence 1123344444555555599999999999999988765
No 55
>KOG1434 consensus Meiotic recombination protein Dmc1 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.77 E-value=1.6e-19 Score=150.89 Aligned_cols=162 Identities=28% Similarity=0.417 Sum_probs=129.4
Q ss_pred CCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHh------hcCCeEEEEecCCCCCHH----HH
Q 024705 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQ------KLGGYCAYLDVENALDPS----LA 165 (264)
Q Consensus 96 ~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~------~~g~~v~~~~~e~~~~~~----~~ 165 (264)
.....|+||..+||.+|| ||++.=++++|.|.+|+|||.+..+++..++ ..+++++|||+|.++.+. ++
T Consensus 92 ~~v~~ItTgs~~lD~ILG-GGI~~m~iTEifGefr~GKTQlshtLcVt~QlPr~~Gg~~Gk~ifIDTEgtFrpdRi~~IA 170 (335)
T KOG1434|consen 92 KTVGSITTGSSALDDILG-GGIPSMSITEIFGEFRCGKTQLSHTLCVTVQLPREMGGVGGKAIFIDTEGTFRPDRIKDIA 170 (335)
T ss_pred hccceeecchHHHhhhhc-CCccchhhHHHcCCCCcCccceeeEEEEEeecchhhCCCCceEEEEecCCccchHHHHHHH
Confidence 457789999999999999 9999999999999999999999998877665 246899999999998874 46
Q ss_pred HHcCCCcc----ceeEeCCCCHHHHHHHHHHH---h-hcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHH
Q 024705 166 EAMGIDAE----NLLIAQPDSAENLLSVVDTL---T-KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALR 237 (264)
Q Consensus 166 ~~~g~~~~----~l~~~~~~~~ee~~~~i~~~---~-~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~ 237 (264)
++++++++ |+.+.+..+.++..+.+..+ . +.++.++||+||+...+ +-+++++. .++ ..++.+.+.+.
T Consensus 171 e~~~~d~d~~LdNI~y~Ra~~se~qmelv~~L~~~~se~g~~rlvIVDsIma~F-RvDy~grg--eLs-eRqqkLn~ml~ 246 (335)
T KOG1434|consen 171 ERFKVDPDFTLDNILYFRAYNSEEQMELVYLLGDFLSEHGKYRLVIVDSIMALF-RVDYDGRG--ELS-ERQQKLNQMLQ 246 (335)
T ss_pred HHhCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHhhcCcEEEEEEeceehhe-eecccccc--cHH-HHHHHHHHHHH
Confidence 77787765 66777777777666655433 3 33689999999999999 46777653 233 33444777888
Q ss_pred HHHHHHhccCcEEEEEcccchHhhh
Q 024705 238 KIHYSLCQSHTLIIFLNQVKVLLLK 262 (264)
Q Consensus 238 ~l~~~l~~~g~tVi~i~h~~~~~~~ 262 (264)
++.+.++++|++|+++||+..+...
T Consensus 247 kl~~laeefnvAVfltNQvttdpga 271 (335)
T KOG1434|consen 247 KLNKLAEEFNVAVFLTNQVTTDPGA 271 (335)
T ss_pred HHHHHHHhccEEEEEecceecCCcc
Confidence 8888889999999999999887653
No 56
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=99.75 E-value=2.1e-17 Score=143.32 Aligned_cols=146 Identities=29% Similarity=0.379 Sum_probs=111.7
Q ss_pred CCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH--HHHHHcCCCccce
Q 024705 98 GPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAENL 175 (264)
Q Consensus 98 ~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~--~~~~~~g~~~~~l 175 (264)
.+++|||++.||++++ ||+++|++++|.|+||+|||+|+.+++.+.+..|++|+|+++++.... ..+.++|++++..
T Consensus 2 ~~~~~TGI~glD~~l~-GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~ 80 (260)
T COG0467 2 MERIPTGIPGLDEILG-GGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVY 80 (260)
T ss_pred CccccCCCcchHHHhc-CCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHHcCCCHHHH
Confidence 4678999999999999 999999999999999999999999999999999999999999998887 4466688876521
Q ss_pred ------eEe---------------CCCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHH
Q 024705 176 ------LIA---------------QPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQ 234 (264)
Q Consensus 176 ------~~~---------------~~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~ 234 (264)
.+. .+...+.+...+...+...++..+|+||+..+..... . ....+ .
T Consensus 81 ~~~g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~~~~~ViDsi~~~~~~~~--~-------~~~~r---~ 148 (260)
T COG0467 81 IEKGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEGADRVVIDSITELTLYLN--D-------PALVR---R 148 (260)
T ss_pred hhcCCEEEEEccccccccccccccCCccHHHHHHHHHHHHHHhCCCEEEEeCCchHhhhcC--c-------hHHHH---H
Confidence 111 0234566777788887777899999999996552111 0 12223 3
Q ss_pred HHHHHHHHHhccCcEEEEEccc
Q 024705 235 ALRKIHYSLCQSHTLIIFLNQV 256 (264)
Q Consensus 235 ~L~~l~~~l~~~g~tVi~i~h~ 256 (264)
.+..+.+.+++.++|.+++++.
T Consensus 149 ~~~~l~~~~~~~~~t~~~~~~~ 170 (260)
T COG0467 149 ILLLLKRFLKKLGVTSLLTTEA 170 (260)
T ss_pred HHHHHHHHHHhCCCEEEEEecc
Confidence 4444455558888999988864
No 57
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=99.74 E-value=8e-17 Score=146.49 Aligned_cols=155 Identities=18% Similarity=0.213 Sum_probs=120.6
Q ss_pred CCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhc-CCeEEEEecCCCCCHHHHHHc----CCCc
Q 024705 98 GPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVENALDPSLAEAM----GIDA 172 (264)
Q Consensus 98 ~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~-g~~v~~~~~e~~~~~~~~~~~----g~~~ 172 (264)
..++|||+..||.+++ |+.+|++++++|+||.|||+|+++++.+++.. +.+|++|+.|++..+...+.+ +++.
T Consensus 176 ~~Gi~tgf~~LD~~t~--G~~~~dLii~AaRP~mGKTafalnia~n~a~~~~~~v~iFSLEM~~eql~~R~Ls~~s~v~~ 253 (435)
T COG0305 176 LIGVPTGFTDLDEITS--GFRPGDLIIVAARPGMGKTALALNIALNAAADGRKPVAIFSLEMSEEQLVMRLLSSESGIES 253 (435)
T ss_pred CcccccCchhhHHHhc--CCccCCEEEEccCCCCChHHHHHHHHHHHHHhcCCCeEEEEccCCHHHHHHHhhccccccch
Confidence 7899999999999997 89999999999999999999999999999875 556999999999877433322 2221
Q ss_pred c-------------------------ceeEeC--CCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCc
Q 024705 173 E-------------------------NLLIAQ--PDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYS 225 (264)
Q Consensus 173 ~-------------------------~l~~~~--~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~ 225 (264)
. .+++.+ ..+..++...++++...++.++++||+++.+......
T Consensus 254 ~kirtg~l~~~d~~~l~~a~~~l~~~~i~IdD~~~~si~eir~~aRrlk~~~~l~~i~iDYLqLm~~~~~~--------- 324 (435)
T COG0305 254 SKLRTGRLSDDEWERLIKAASELSEAPIFIDDTPGLTITEIRSKARRLKLKHNLGLIVIDYLQLMTGGKKS--------- 324 (435)
T ss_pred hccccccccHHHHHHHHHHHHHHhhCCeeecCCCcCCHHHHHHHHHHHHHhcCccEEEEEEEEeecccccc---------
Confidence 1 123322 2467788888999988888999999999998842111
Q ss_pred HHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 226 DAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 226 ~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
.....+++..-+.|...+++.+++||..+|+++.+|.|
T Consensus 325 ~~r~qevs~iSr~LK~lAkEl~vpvialSQLsR~~E~R 362 (435)
T COG0305 325 ENRKQEVSEISRSLKGLAKELGVPVIALSQLNRSVEQR 362 (435)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCcEEehhhhcccchhc
Confidence 23444455555555556699999999999999999986
No 58
>KOG1564 consensus DNA repair protein RHP57 [Replication, recombination and repair]
Probab=99.73 E-value=2.3e-17 Score=139.85 Aligned_cols=160 Identities=24% Similarity=0.381 Sum_probs=118.8
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhh------cCCeEEEEecCCCCCHHHHHHc--
Q 024705 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK------LGGYCAYLDVENALDPSLAEAM-- 168 (264)
Q Consensus 97 ~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~------~g~~v~~~~~e~~~~~~~~~~~-- 168 (264)
..+.++||...||+.++ ||++.+.+++|+|++|+|||.|+++++...+- -|++++|+.+|..+...|...+
T Consensus 80 ~~~~lttgc~~LD~~L~-GGi~~~giTEi~GeSg~GKtQL~lQL~L~VQLp~~~GGL~~~~vYI~TE~~fP~rRL~qL~~ 158 (351)
T KOG1564|consen 80 NRSKLTTGCVALDECLR-GGIPTDGITEICGESGCGKTQLLLQLSLCVQLPRSHGGLGGGAVYICTESPFPTRRLHQLSH 158 (351)
T ss_pred CchhcccccHHHHHHhc-CCcccccHHHHhhccCCcHHHHHHHHHHHhhCchhhCCCCCceEEEEcCCCCcHHHHHHHHH
Confidence 34679999999999999 99999999999999999999999999887652 4678999999999886442111
Q ss_pred --C---------C----CccceeEeCCCCHHHHHHHHHHH----hhcCCccEEEEcCccccccccccCCCcCCC-CcHHH
Q 024705 169 --G---------I----DAENLLIAQPDSAENLLSVVDTL----TKSGSIDVIVVDSVAALIPKCEIGVPINGM-YSDAQ 228 (264)
Q Consensus 169 --g---------~----~~~~l~~~~~~~~ee~~~~i~~~----~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~-~~~~q 228 (264)
. . +-+++++....+++.+.+.+... ....++++|||||+.+.+ +.+++..+.+. ..+.+
T Consensus 159 ~~~~rp~~~~~~~~~~Npgd~IFv~~~~d~d~l~~iv~~qlPiL~~r~~i~LVIiDSVAa~f-R~E~d~~~Sdl~~r~~~ 237 (351)
T KOG1564|consen 159 TLPQRPNPEKELNYNDNPGDHIFVENVHDVDHLLHIVNRQLPILLNRKKIKLVIIDSVAALF-RSEFDYNPSDLKKRARH 237 (351)
T ss_pred hcccCCCcchhhhhccCCCceEEEEeccchhhHHHHHhhhccceeccCcceEEEEehhhHHH-HHHhccChhhhhhHHHH
Confidence 1 1 11236666677788777777654 356789999999999999 46766433211 11233
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEEcccchHhh
Q 024705 229 SRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLL 261 (264)
Q Consensus 229 ~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~ 261 (264)
...++..|+.++ .+++++|+++||+.+.++
T Consensus 238 l~rla~~Lr~LA---~~~~~aVV~~NQVtd~~~ 267 (351)
T KOG1564|consen 238 LFRLAGKLRQLA---SKFDLAVVCANQVTDRVE 267 (351)
T ss_pred HHHHHHHHHHHH---HhcCccEEEeeccccccc
Confidence 333555555555 899999999999998754
No 59
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.71 E-value=1.8e-16 Score=135.00 Aligned_cols=145 Identities=22% Similarity=0.333 Sum_probs=102.0
Q ss_pred CccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH--HHHHHcCCCccce-
Q 024705 99 PVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAENL- 175 (264)
Q Consensus 99 ~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~--~~~~~~g~~~~~l- 175 (264)
..+.++++.||..++ ||+++|++++|.|+||+|||||+.+++...+++|++++|++++++... ..++++|++.+..
T Consensus 4 ~~~~~~~~~ld~~l~-ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~ 82 (230)
T PRK08533 4 AKIELSRDELHKRLG-GGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKL 82 (230)
T ss_pred EEEEEEEeeeehhhC-CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHh
Confidence 457889999999999 999999999999999999999999999998889999999999998776 3345678776532
Q ss_pred -----eEeCC----CC---HHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHH
Q 024705 176 -----LIAQP----DS---AENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSL 243 (264)
Q Consensus 176 -----~~~~~----~~---~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l 243 (264)
.+.+. .. .+..+..+.......++++++||+++..... . .+....+.+.+.++.+
T Consensus 83 ~~~~l~~~~~~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~-~--------~d~~~~~~l~~~l~~l---- 149 (230)
T PRK08533 83 ISGKLLYIPVYPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISN-D--------ASEVAVNDLMAFFKRI---- 149 (230)
T ss_pred hcCcEEEEEecccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcC-C--------cchHHHHHHHHHHHHH----
Confidence 11111 11 2333333333344468999999999987621 0 1112334455555555
Q ss_pred hccCcEEEEEcccc
Q 024705 244 CQSHTLIIFLNQVK 257 (264)
Q Consensus 244 ~~~g~tVi~i~h~~ 257 (264)
++.|++++++++..
T Consensus 150 ~~~g~tvi~t~~~~ 163 (230)
T PRK08533 150 SSLNKVIILTANPK 163 (230)
T ss_pred HhCCCEEEEEeccc
Confidence 45588887776643
No 60
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=99.69 E-value=3.6e-17 Score=135.25 Aligned_cols=151 Identities=24% Similarity=0.322 Sum_probs=84.6
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhh----------cCCeEEEEecCCCCCH--HH
Q 024705 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK----------LGGYCAYLDVENALDP--SL 164 (264)
Q Consensus 97 ~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~----------~g~~v~~~~~e~~~~~--~~ 164 (264)
....++++.+.+|.+++ |++++|++++|+||+|+|||+++.+++..++. .+.+|+|+++|.+... .+
T Consensus 10 ~~~~~~~~~~~~~~li~-g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~r 88 (193)
T PF13481_consen 10 SFEDLDTGFPPLDWLID-GLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARR 88 (193)
T ss_dssp ---HHHS------EEET-TEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHH
T ss_pred hhhhccCCCCCcceeEC-CcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHH
Confidence 34568899999999999 89999999999999999999999999998886 5779999999998644 23
Q ss_pred HHHcCCCc---cc-----------eeEeCCC----CHHHHHHHHHHHhhc-CCccEEEEcCccccccccccCCCcCCCCc
Q 024705 165 AEAMGIDA---EN-----------LLIAQPD----SAENLLSVVDTLTKS-GSIDVIVVDSVAALIPKCEIGVPINGMYS 225 (264)
Q Consensus 165 ~~~~g~~~---~~-----------l~~~~~~----~~ee~~~~i~~~~~~-~~~~~vvIDsl~~~~~~~~~~~~~~~~~~ 225 (264)
...++... ++ +.+.... ..+..++.+...+.. .++++||||+++.+... . ..+
T Consensus 89 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~-~-------~~~ 160 (193)
T PF13481_consen 89 LRALLQDYDDDANLFFVDLSNWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG-D-------ENS 160 (193)
T ss_dssp HHHHHTTS-HHHHHHHHHH--E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S---------TT-
T ss_pred HHHHhcccCCccceEEeeccccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC-C-------CCC
Confidence 22222211 11 1111111 124445555666555 68999999999999853 1 111
Q ss_pred HHHHHHHHHHHHHHHHHHhccCcEEEEEcccchH
Q 024705 226 DAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVL 259 (264)
Q Consensus 226 ~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~ 259 (264)
......+.+.|++++ +++|++|++++|.++.
T Consensus 161 ~~~~~~~~~~l~~la---~~~~~~vi~v~H~~K~ 191 (193)
T PF13481_consen 161 NSAVAQLMQELKRLA---KEYGVAVILVHHTNKS 191 (193)
T ss_dssp HHHHHHHHHHHHHHH---HHH--EEEEEEEE---
T ss_pred HHHHHHHHHHHHHHH---HHcCCEEEEEECCCCC
Confidence 122244455555554 8899999999998764
No 61
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.66 E-value=1.5e-15 Score=124.61 Aligned_cols=143 Identities=27% Similarity=0.376 Sum_probs=109.7
Q ss_pred ccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH--HHHHHcCCCccce--
Q 024705 100 VISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAENL-- 175 (264)
Q Consensus 100 ~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~--~~~~~~g~~~~~l-- 175 (264)
-+++|.++||+-+| ||+|-|++++|-|++|+|||.|+.++++.++.+|.++.|+++|.+... ...+.++++..+.
T Consensus 9 ii~~gndelDkrLG-GGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l 87 (235)
T COG2874 9 IIKSGNDELDKRLG-GGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLL 87 (235)
T ss_pred hccCCcHHHHhhcc-CCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHh
Confidence 47999999999999 999999999999999999999999999999999999999999988766 3456678776532
Q ss_pred ----eEeC---------CCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHH
Q 024705 176 ----LIAQ---------PDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYS 242 (264)
Q Consensus 176 ----~~~~---------~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~ 242 (264)
.+++ ......+++.+-...+..+.++++|||++.....+ +..++..+...++++
T Consensus 88 ~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~----------~~~~vl~fm~~~r~l--- 154 (235)
T COG2874 88 SGRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD----------SEDAVLNFMTFLRKL--- 154 (235)
T ss_pred cceeEEEEecccccccChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc----------cHHHHHHHHHHHHHH---
Confidence 2222 11244566666666666789999999999988532 123444444444444
Q ss_pred HhccCcEEEEEcccc
Q 024705 243 LCQSHTLIIFLNQVK 257 (264)
Q Consensus 243 l~~~g~tVi~i~h~~ 257 (264)
...|.+||++-|..
T Consensus 155 -~d~gKvIilTvhp~ 168 (235)
T COG2874 155 -SDLGKVIILTVHPS 168 (235)
T ss_pred -HhCCCEEEEEeChh
Confidence 57799999998864
No 62
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.54 E-value=7.6e-14 Score=114.60 Aligned_cols=124 Identities=22% Similarity=0.304 Sum_probs=87.3
Q ss_pred EEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH--HHHHHcCCCccce------eEeCCC----CH------
Q 024705 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAENL------LIAQPD----SA------ 183 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~--~~~~~~g~~~~~l------~~~~~~----~~------ 183 (264)
+++|.||||+|||+|+.+++...++.|++|+|+++|++... .+++++|++.+.+ .+.+.. ..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~ 80 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLR 80 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhh
Confidence 47899999999999999999999999999999999998876 4667788875532 222211 11
Q ss_pred HHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchH
Q 024705 184 ENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVL 259 (264)
Q Consensus 184 ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~ 259 (264)
.++...+...+...++++++||+++.+... +. .... ..+..+...+++.|+++|+++|....
T Consensus 81 ~~~~~~i~~~~~~~~~~~lviD~~~~~~~~----~~------~~~~----~~i~~l~~~l~~~g~tvi~v~~~~~~ 142 (187)
T cd01124 81 LELIQRLKDAIEEFKAKRVVIDSVSGLLLM----EQ------STAR----LEIRRLLFALKRFGVTTLLTSEQSGL 142 (187)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCcHHHhhc----Ch------HHHH----HHHHHHHHHHHHCCCEEEEEeccccC
Confidence 134455666666678999999999988731 00 0122 23333444446679999999997654
No 63
>KOG1433 consensus DNA repair protein RAD51/RHP55 [Replication, recombination and repair]
Probab=99.51 E-value=1e-13 Score=122.09 Aligned_cols=162 Identities=24% Similarity=0.353 Sum_probs=113.7
Q ss_pred CCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH----HHHHHcCCC
Q 024705 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP----SLAEAMGID 171 (264)
Q Consensus 96 ~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~----~~~~~~g~~ 171 (264)
.....++||..+||.+|+ ||++-|.+++|+||||+|||.|++.++.....-+++++|+|.+..+.. .++.+.|..
T Consensus 88 ~~~~~l~Tg~~~lD~lL~-gGi~~g~~TEi~G~p~~GKtQlc~~~~v~~~gge~~~l~IDs~s~~~~~~~~~ia~~~~~~ 166 (326)
T KOG1433|consen 88 SELGFLSTGSKALDKLLG-GGIETGSLTELVGPPGSGKTQLCHTLAVTCGGGEGKVLYIDTESTFRLERLTEIAGRSGLR 166 (326)
T ss_pred ccceeeccchhhhhHhhc-cCcccCceeEEecCCCccHHHHHHHHHHhccCCcceEEEEecchhcccchhhhhhhhhhhh
Confidence 456779999999999999 999999999999999999999998888766455678999999885332 455555554
Q ss_pred cc----ceeEeCCCCHHHHHHH---HHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHh
Q 024705 172 AE----NLLIAQPDSAENLLSV---VDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLC 244 (264)
Q Consensus 172 ~~----~l~~~~~~~~ee~~~~---i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~ 244 (264)
.. ++.+....+.++.... ...........++++|+...... .++.+ .++ ....+..++..++.+.+.++
T Consensus 167 ~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~l~~vds~ta~~~-~~~~g-~~~--~~a~~~~~~~~~~~l~~la~ 242 (326)
T KOG1433|consen 167 GRDTLSNLMLARAYNLDHQLQLIQEAEIMINQSRVKLLIVDSATALYR-TTFKG-RGE--LSARQMLLAKFLRSLKKLAD 242 (326)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccceeEEEecccccccc-ccccc-ccc--hHHHHHHHHHHHHHHHHHHH
Confidence 44 2222222222222221 22223445778999999999884 44444 211 12333446677777777779
Q ss_pred ccCcEEEEEcccchHhhh
Q 024705 245 QSHTLIIFLNQVKVLLLK 262 (264)
Q Consensus 245 ~~g~tVi~i~h~~~~~~~ 262 (264)
++|..||+.||+...++.
T Consensus 243 ~~g~~vvitn~v~~~~d~ 260 (326)
T KOG1433|consen 243 EFGVAVVITNQVTAQVDG 260 (326)
T ss_pred hcCceEEEeccccccccc
Confidence 999999999999987754
No 64
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.41 E-value=5.6e-12 Score=100.34 Aligned_cols=133 Identities=25% Similarity=0.356 Sum_probs=89.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHH----cCCCccceeEeCCC----CHHHHHHHHHHH
Q 024705 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEA----MGIDAENLLIAQPD----SAENLLSVVDTL 193 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~----~g~~~~~l~~~~~~----~~ee~~~~i~~~ 193 (264)
+++|+|+||+|||+++..++..+...+++++|++.+.......... .....++..+.... ............
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERL 80 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHH
Confidence 3789999999999999999999998999999999998876533221 11122333333222 233333344455
Q ss_pred hhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhh
Q 024705 194 TKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLL 261 (264)
Q Consensus 194 ~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~ 261 (264)
....+++++|||+++.+...... ... .....+...+..+...+++.|+++|+++|..+..+
T Consensus 81 ~~~~~~~~lviDe~~~~~~~~~~-~~~------~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~ 141 (165)
T cd01120 81 RERGGDDLIILDELTRLVRALRE-IRE------GYPGELDEELRELLERARKGGVTVIFTLQVPSGDK 141 (165)
T ss_pred HhCCCCEEEEEEcHHHHHHHHHH-HHh------cCChHHHHHHHHHHHHHhcCCceEEEEEecCCccc
Confidence 56678999999999998742111 000 01122446677777777889999999999887654
No 65
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=99.38 E-value=7.9e-12 Score=107.08 Aligned_cols=128 Identities=20% Similarity=0.304 Sum_probs=80.8
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHhh------------cCCeEEEEecCCCCCH--HHHHHcCCC------ccceeE--
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQK------------LGGYCAYLDVENALDP--SLAEAMGID------AENLLI-- 177 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~~------------~g~~v~~~~~e~~~~~--~~~~~~g~~------~~~l~~-- 177 (264)
|++.+|+||+|+|||+|+++++..++. .+++|+|++.|++... .+...++.. .+++.+
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~ 80 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDS 80 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEec
Confidence 678999999999999999999987652 5678999999998764 333333221 112221
Q ss_pred --------eCC---CCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhcc
Q 024705 178 --------AQP---DSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQS 246 (264)
Q Consensus 178 --------~~~---~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~ 246 (264)
... ...+.+...++ .+...+++++|||++..+....+ .+....+.+.+.|.+++ ++.
T Consensus 81 g~~~~l~~~~~~~~~~~~~~~~l~~-~~~~~~~~lvviDpl~~~~~~~~--------~d~~~~~~~~~~L~~~a---~~~ 148 (239)
T cd01125 81 GRIQPISIAREGRIIVVPEFERIIE-QLLIRRIDLVVIDPLVSFHGVSE--------NDNGAMDAVIKALRRIA---AQT 148 (239)
T ss_pred cCCCceecccCCcccccHHHHHHHH-HHHhcCCCEEEECChHHhCCCCc--------CCHHHHHHHHHHHHHHH---HHh
Confidence 111 11223333333 23346899999999888742111 11233443444555554 888
Q ss_pred CcEEEEEcccchH
Q 024705 247 HTLIIFLNQVKVL 259 (264)
Q Consensus 247 g~tVi~i~h~~~~ 259 (264)
|++|++++|..+.
T Consensus 149 g~avl~v~H~~K~ 161 (239)
T cd01125 149 GAAILLVHHVRKG 161 (239)
T ss_pred CCEEEEEeccCcc
Confidence 9999999998753
No 66
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.38 E-value=4.9e-12 Score=106.29 Aligned_cols=74 Identities=16% Similarity=0.123 Sum_probs=53.7
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC-C-----HHHHHHcCCCccceeEeCCCCHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-D-----PSLAEAMGIDAENLLIAQPDSAENLLSV 189 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~-~-----~~~~~~~g~~~~~l~~~~~~~~ee~~~~ 189 (264)
-+++|+++.|.||+|||||||+..+..-..+.++.+.+...+... . ..|.+.+|+..|++.+.+..++.|.+..
T Consensus 27 ~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~l 106 (226)
T COG1136 27 EIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVEL 106 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHh
Confidence 488999999999999999997666655555545555554433321 1 2567789999999988888888777653
No 67
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.36 E-value=3.1e-12 Score=107.92 Aligned_cols=140 Identities=16% Similarity=0.181 Sum_probs=86.0
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH---HHHHHcCCCccceeEeCCCCHHHHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP---SLAEAMGIDAENLLIAQPDSAENLLSVVDT 192 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~---~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~ 192 (264)
-++.|+++++.||+||||||++..+ ..+.....+-++++.+...+. ...+++||..|.+-+++..++++.+..+-.
T Consensus 23 ~I~~gef~vliGpSGsGKTTtLkMI-NrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~ 101 (309)
T COG1125 23 TIEEGEFLVLIGPSGSGKTTTLKMI-NRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPK 101 (309)
T ss_pred EecCCeEEEEECCCCCcHHHHHHHH-hcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhh
Confidence 4889999999999999999965554 444444444556666554442 678889999999988888887777655543
Q ss_pred Hhhc----------CCccEEEEcC--ccccccccccCC----------------------CcCCCCcHHHHHHHHHHHHH
Q 024705 193 LTKS----------GSIDVIVVDS--VAALIPKCEIGV----------------------PINGMYSDAQSRIMTQALRK 238 (264)
Q Consensus 193 ~~~~----------~~~~~vvIDs--l~~~~~~~~~~~----------------------~~~~~~~~~q~r~i~~~L~~ 238 (264)
+..= .-.+++-+|. +..-+| .+++| +|.++++.-....+...+.+
T Consensus 102 L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~ 180 (309)
T COG1125 102 LLGWDKERIKKRADELLDLVGLDPSEYADRYP-HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKE 180 (309)
T ss_pred hcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-hhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHH
Confidence 3200 0011222221 111111 11111 23333333333345556677
Q ss_pred HHHHHhccCcEEEEEcccchHh
Q 024705 239 IHYSLCQSHTLIIFLNQVKVLL 260 (264)
Q Consensus 239 l~~~l~~~g~tVi~i~h~~~~~ 260 (264)
+. ++.|.|+|+++|+.++.
T Consensus 181 lq---~~l~kTivfVTHDidEA 199 (309)
T COG1125 181 LQ---KELGKTIVFVTHDIDEA 199 (309)
T ss_pred HH---HHhCCEEEEEecCHHHH
Confidence 76 78899999999998764
No 68
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.34 E-value=1.7e-11 Score=100.09 Aligned_cols=137 Identities=15% Similarity=0.127 Sum_probs=93.6
Q ss_pred HHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH-HHHHHcCCCccceeEeCCCCHHH
Q 024705 107 KLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP-SLAEAMGIDAENLLIAQPDSAEN 185 (264)
Q Consensus 107 ~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~-~~~~~~g~~~~~l~~~~~~~~ee 185 (264)
+++.+.= -.+.|+++.|.||||+||||++..++.-+.+..+++..-..+....+ ...+.+|+.....-++...+++|
T Consensus 17 AvrdVSF--~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rE 94 (245)
T COG4555 17 AVRDVSF--EAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARE 94 (245)
T ss_pred hhhheeE--EeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHH
Confidence 3444432 47899999999999999999888888877777776666556655555 45667888776655555555544
Q ss_pred HHHH----------------------------------------------HHHHhhcCCccEEEEcCccccccccccCCC
Q 024705 186 LLSV----------------------------------------------VDTLTKSGSIDVIVVDSVAALIPKCEIGVP 219 (264)
Q Consensus 186 ~~~~----------------------------------------------i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~ 219 (264)
.+.. .+.++ ++|+++++|...+-..
T Consensus 95 nl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlv--h~P~i~vlDEP~sGLD------- 165 (245)
T COG4555 95 NLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALV--HDPSILVLDEPTSGLD------- 165 (245)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHh--cCCCeEEEcCCCCCcc-------
Confidence 3321 11111 5788999997654431
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhcC
Q 024705 220 INGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKHF 264 (264)
Q Consensus 220 ~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~~ 264 (264)
-.-. +.++++...+++.|.+||+.+|...++++.|
T Consensus 166 ------i~~~----r~~~dfi~q~k~egr~viFSSH~m~EvealC 200 (245)
T COG4555 166 ------IRTR----RKFHDFIKQLKNEGRAVIFSSHIMQEVEALC 200 (245)
T ss_pred ------HHHH----HHHHHHHHHhhcCCcEEEEecccHHHHHHhh
Confidence 0122 3445555555888999999999999999876
No 69
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.33 E-value=1.8e-12 Score=104.85 Aligned_cols=83 Identities=19% Similarity=0.194 Sum_probs=63.6
Q ss_pred ccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC-----HHHHHHcCCCccc
Q 024705 100 VISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD-----PSLAEAMGIDAEN 174 (264)
Q Consensus 100 ~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~-----~~~~~~~g~~~~~ 174 (264)
.++.|-+.|+.+-= -+++|+++.++||+|+|||||+..+.....+..+.+.+.+.+-+.- +...+++|+..|+
T Consensus 10 ~Y~~g~~aL~~vs~--~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD 87 (223)
T COG2884 10 AYPGGREALRDVSF--HIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQD 87 (223)
T ss_pred hcCCCchhhhCceE--eecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeee
Confidence 44556557777643 6899999999999999999999999888888888888887765532 2567889999887
Q ss_pred eeEeCCCCHH
Q 024705 175 LLIAQPDSAE 184 (264)
Q Consensus 175 l~~~~~~~~e 184 (264)
..+....++.
T Consensus 88 ~rLL~~~tvy 97 (223)
T COG2884 88 FRLLPDRTVY 97 (223)
T ss_pred ccccccchHh
Confidence 7665544433
No 70
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.32 E-value=1.4e-11 Score=105.10 Aligned_cols=129 Identities=14% Similarity=0.228 Sum_probs=79.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeC--CCCHHHHHH-----
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQ--PDSAENLLS----- 188 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~--~~~~ee~~~----- 188 (264)
-+++|+++.|.||||+|||||+..++.-+.+..+.+.++........ ...++|+.||+..+.. |.++.+++.
T Consensus 26 ~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~-~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~ 104 (254)
T COG1121 26 SVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRR-KRLRIGYVPQKSSVDRSFPITVKDVVLLGRYG 104 (254)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccc-cCCeEEEcCcccccCCCCCcCHHHHHHccCcc
Confidence 58899999999999999999999988877666666655543221111 1234566666432111 222222211
Q ss_pred ---------------------------------------------HHHHHhhcCCccEEEEcCccccccccccCCCcCCC
Q 024705 189 ---------------------------------------------VVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGM 223 (264)
Q Consensus 189 ---------------------------------------------~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~ 223 (264)
+.+.+ ..+++++++|+...-..
T Consensus 105 ~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL--~~~p~lllLDEP~~gvD----------- 171 (254)
T COG1121 105 KKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARAL--AQNPDLLLLDEPFTGVD----------- 171 (254)
T ss_pred cccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHh--ccCCCEEEecCCcccCC-----------
Confidence 11111 24678888886554331
Q ss_pred CcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhcC
Q 024705 224 YSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKHF 264 (264)
Q Consensus 224 ~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~~ 264 (264)
...+..+...|+++. ++ |+||++++|+...+.+.|
T Consensus 172 --~~~~~~i~~lL~~l~---~e-g~tIl~vtHDL~~v~~~~ 206 (254)
T COG1121 172 --VAGQKEIYDLLKELR---QE-GKTVLMVTHDLGLVMAYF 206 (254)
T ss_pred --HHHHHHHHHHHHHHH---HC-CCEEEEEeCCcHHhHhhC
Confidence 133344666777775 55 999999999998876654
No 71
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.30 E-value=5e-12 Score=111.42 Aligned_cols=133 Identities=14% Similarity=0.145 Sum_probs=92.5
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC-HHHHHHcCCCccceeEeCCCCHHHHHHHHHHHh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD-PSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~-~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~ 194 (264)
-+++|+++++.||||+||||++..++....+.++.+.+...+.... ....+++|+.++...+++..++.|.+..+..+.
T Consensus 27 ~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~ 106 (293)
T COG1131 27 EVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLY 106 (293)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHh
Confidence 6889999999999999999999998888877777777776555443 355667899888877777666666554433321
Q ss_pred h--------------------------------------------cCCccEEEEcCccccccccccCCCcCCCCcHHHHH
Q 024705 195 K--------------------------------------------SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSR 230 (264)
Q Consensus 195 ~--------------------------------------------~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r 230 (264)
. ..+|+++++|..+.- ++...++
T Consensus 107 ~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~G-------------LDp~~~~ 173 (293)
T COG1131 107 GLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSG-------------LDPESRR 173 (293)
T ss_pred CCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcC-------------CCHHHHH
Confidence 1 133455555543332 2234445
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcccchHhhhcC
Q 024705 231 IMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKHF 264 (264)
Q Consensus 231 ~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~~ 264 (264)
.+.+.|++++ ++.|+||++++|..++++..|
T Consensus 174 ~~~~~l~~l~---~~g~~tvlissH~l~e~~~~~ 204 (293)
T COG1131 174 EIWELLRELA---KEGGVTILLSTHILEEAEELC 204 (293)
T ss_pred HHHHHHHHHH---hCCCcEEEEeCCcHHHHHHhC
Confidence 5566666665 555599999999999998765
No 72
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.27 E-value=4.1e-11 Score=102.67 Aligned_cols=127 Identities=20% Similarity=0.258 Sum_probs=82.5
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC---CHHHHHHcCCCcccee----------------
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL---DPSLAEAMGIDAENLL---------------- 176 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~---~~~~~~~~g~~~~~l~---------------- 176 (264)
-+++|+++.|.||||||||||+..++.-..+..|.| +++..... ...+++.+++.+|...
T Consensus 24 ~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V-~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~ 102 (258)
T COG1120 24 SIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV-LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRY 102 (258)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEE-EECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCC
Confidence 478999999999999999999988888776555555 44443322 2368888888776421
Q ss_pred ----EeCCCCHHH---H---H------------------------HHHHHHhhcCCccEEEEcCccccccccccCCCcCC
Q 024705 177 ----IAQPDSAEN---L---L------------------------SVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPING 222 (264)
Q Consensus 177 ----~~~~~~~ee---~---~------------------------~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~ 222 (264)
+....+.++ + + .+.+.+ ..+++++++|+.++...
T Consensus 103 p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArAL--aQ~~~iLLLDEPTs~LD---------- 170 (258)
T COG1120 103 PHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARAL--AQETPILLLDEPTSHLD---------- 170 (258)
T ss_pred cccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHH--hcCCCEEEeCCCccccC----------
Confidence 011111111 1 1 111111 24678899998887762
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhh
Q 024705 223 MYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLL 261 (264)
Q Consensus 223 ~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~ 261 (264)
-..+-++.+.++++. ++.|.|||++.|+.+-.-
T Consensus 171 ---i~~Q~evl~ll~~l~---~~~~~tvv~vlHDlN~A~ 203 (258)
T COG1120 171 ---IAHQIEVLELLRDLN---REKGLTVVMVLHDLNLAA 203 (258)
T ss_pred ---HHHHHHHHHHHHHHH---HhcCCEEEEEecCHHHHH
Confidence 133444667777776 788999999999876543
No 73
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.26 E-value=5.1e-12 Score=112.72 Aligned_cols=74 Identities=19% Similarity=0.195 Sum_probs=58.4
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSV 189 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~ 189 (264)
-+++|+++.+.|||||||||+++.++.--.+.++.+.+-..+...-+...+.+|+..|+..+++..++.+++..
T Consensus 27 ~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVaf 100 (352)
T COG3842 27 DIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAF 100 (352)
T ss_pred eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhh
Confidence 58899999999999999999888888776666776655544444445567779999999998888888776543
No 74
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=99.26 E-value=9e-11 Score=101.91 Aligned_cols=133 Identities=20% Similarity=0.277 Sum_probs=96.5
Q ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHHHHhh----------cCCeEEEEecCCCCCHH------HHHHcCCCccceeEe
Q 024705 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQK----------LGGYCAYLDVENALDPS------LAEAMGIDAENLLIA 178 (264)
Q Consensus 115 gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~----------~g~~v~~~~~e~~~~~~------~~~~~g~~~~~l~~~ 178 (264)
+-+..|-..+|+|++|+||||+++.++..++. .-++|+|++.|...... ...++|+.+.++...
T Consensus 84 ~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvrn~ 163 (402)
T COG3598 84 EFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVRNM 163 (402)
T ss_pred HHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhhhhe
Confidence 45567878889999999999999888776542 45789999999887762 345678877655333
Q ss_pred CCCC-----------HHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccC
Q 024705 179 QPDS-----------AENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSH 247 (264)
Q Consensus 179 ~~~~-----------~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g 247 (264)
+..+ ...+.........+..+++||||++..++.. +..+..|.+++.+.+++++ ...+
T Consensus 164 dltd~~Gaa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~v~f~~G--------~s~s~vqv~~fi~~~rkla---~~l~ 232 (402)
T COG3598 164 DLTDVSGAADESDVLSPKLYRRFEKILEQKRPDFVVIDPFVAFYEG--------KSISDVQVKEFIKKTRKLA---RNLE 232 (402)
T ss_pred eccccccCCCccccccHHHHHHHHHHHHHhCCCeEEEcchhhhcCC--------ccchhHHHHHHHHHHHHHH---HhcC
Confidence 2211 1144455555556678999999999988842 2233478888888888887 8889
Q ss_pred cEEEEEcccch
Q 024705 248 TLIIFLNQVKV 258 (264)
Q Consensus 248 ~tVi~i~h~~~ 258 (264)
|.||+++|...
T Consensus 233 caIiy~hHtsk 243 (402)
T COG3598 233 CAIIYIHHTSK 243 (402)
T ss_pred CeEEEEecccc
Confidence 99999999764
No 75
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.25 E-value=4.8e-11 Score=105.91 Aligned_cols=132 Identities=14% Similarity=0.122 Sum_probs=80.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH-HHHHHcCCCccceeEeCCCCHHHHHHHHHHHh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP-SLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~-~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~ 194 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.+...+..... ...+.+|+.+++..++...++.+.+.......
T Consensus 29 ~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~ 108 (306)
T PRK13537 29 HVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF 108 (306)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc
Confidence 47899999999999999999999988766666666654433322222 34456788777655554444444433211110
Q ss_pred --------------------------------------------hcCCccEEEEcCccccccccccCCCcCCCCcHHHHH
Q 024705 195 --------------------------------------------KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSR 230 (264)
Q Consensus 195 --------------------------------------------~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r 230 (264)
--.+|+++++|..+.-+ +...++
T Consensus 109 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gL-------------D~~~~~ 175 (306)
T PRK13537 109 GLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGL-------------DPQARH 175 (306)
T ss_pred CCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCC-------------CHHHHH
Confidence 01344555555444333 123333
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcccchHhhhcC
Q 024705 231 IMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKHF 264 (264)
Q Consensus 231 ~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~~ 264 (264)
.+.+.++++ ++.|+|||+++|..+.++..|
T Consensus 176 ~l~~~l~~l----~~~g~till~sH~l~e~~~~~ 205 (306)
T PRK13537 176 LMWERLRSL----LARGKTILLTTHFMEEAERLC 205 (306)
T ss_pred HHHHHHHHH----HhCCCEEEEECCCHHHHHHhC
Confidence 444455554 455999999999999987654
No 76
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.24 E-value=3.1e-11 Score=102.76 Aligned_cols=144 Identities=19% Similarity=0.195 Sum_probs=99.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC----CHHHHHHcCCCccce--eEeCCC--------
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL----DPSLAEAMGIDAENL--LIAQPD-------- 181 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~----~~~~~~~~g~~~~~l--~~~~~~-------- 181 (264)
.+++|+.++|.|+||||||||+..+...+.+..+.+ +++..... .....+.+|+..|+. .++.+.
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v-~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg 104 (235)
T COG1122 26 EIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV-LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFG 104 (235)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEE-EECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhc
Confidence 688999999999999999999998888777777777 55443322 224566788877754 222222
Q ss_pred ------CHHHHHHHHHHHh----------------hcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHH
Q 024705 182 ------SAENLLSVVDTLT----------------KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKI 239 (264)
Q Consensus 182 ------~~ee~~~~i~~~~----------------~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l 239 (264)
+.+++...+.... ..+.-+.|.|.++-++.|.--+-+++...++....+.+.+.++++
T Consensus 105 ~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L 184 (235)
T COG1122 105 LENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKL 184 (235)
T ss_pred hhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 2223333332221 123345677777777776555666777777778888888888888
Q ss_pred HHHHhccCcEEEEEcccchHhhhc
Q 024705 240 HYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 240 ~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
. .+.|.|+|+++|..+.+...
T Consensus 185 ~---~~~~~tii~~tHd~~~~~~~ 205 (235)
T COG1122 185 K---EEGGKTIIIVTHDLELVLEY 205 (235)
T ss_pred H---hcCCCeEEEEeCcHHHHHhh
Confidence 7 67789999999999887654
No 77
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.24 E-value=7.8e-11 Score=98.92 Aligned_cols=127 Identities=16% Similarity=0.209 Sum_probs=85.7
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHH-------
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLS------- 188 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~------- 188 (264)
-+++|++..+.||||+||||+.+.+..-+.+..+.+-|...+. .+....++|+.|+.--+++..++++.+.
T Consensus 24 ~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~--~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkG 101 (300)
T COG4152 24 EVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPL--SQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKG 101 (300)
T ss_pred eecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcch--hhhhhhhcccChhhhccCccCcHHHHHHHHHHhcC
Confidence 4789999999999999999988888877766677777766443 2344556777776555554444332221
Q ss_pred ---------------------------------------HHHHHhhcCCccEEEEcCc-cccccccccCCCcCCCCcHHH
Q 024705 189 ---------------------------------------VVDTLTKSGSIDVIVVDSV-AALIPKCEIGVPINGMYSDAQ 228 (264)
Q Consensus 189 ---------------------------------------~i~~~~~~~~~~~vvIDsl-~~~~~~~~~~~~~~~~~~~~q 228 (264)
.+..+ -+.|+++|+|.. +.+- ...
T Consensus 102 m~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisav--iHePeLlILDEPFSGLD--------------PVN 165 (300)
T COG4152 102 MPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAV--IHEPELLILDEPFSGLD--------------PVN 165 (300)
T ss_pred CcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHH--hcCCCEEEecCCccCCC--------------hhh
Confidence 11111 157888888853 3333 244
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhcC
Q 024705 229 SRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKHF 264 (264)
Q Consensus 229 ~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~~ 264 (264)
++ .|++....+++.|+|||+.+|.++.++..|
T Consensus 166 ~e----lLk~~I~~lk~~GatIifSsH~Me~vEeLC 197 (300)
T COG4152 166 VE----LLKDAIFELKEEGATIIFSSHRMEHVEELC 197 (300)
T ss_pred HH----HHHHHHHHHHhcCCEEEEecchHHHHHHHh
Confidence 44 344444444899999999999999999887
No 78
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.24 E-value=7.7e-11 Score=96.44 Aligned_cols=130 Identities=15% Similarity=0.189 Sum_probs=83.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC----CHHHHHHcCCCccceeEeCCCCHHHHH----
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL----DPSLAEAMGIDAENLLIAQPDSAENLL---- 187 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~----~~~~~~~~g~~~~~l~~~~~~~~ee~~---- 187 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.+...+... ...+.+.+++.+++..+....++.+.+
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~l 101 (178)
T cd03229 22 NIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGL 101 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecC
Confidence 377999999999999999999999887655555555543322211 123344566666665444444444332
Q ss_pred --------HHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchH
Q 024705 188 --------SVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVL 259 (264)
Q Consensus 188 --------~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~ 259 (264)
..++.+. .+++++++|....-.. ...+..+.+.++++. ++.|.++|+++|....
T Consensus 102 S~G~~qr~~la~al~--~~p~llilDEP~~~LD-------------~~~~~~l~~~l~~~~---~~~~~tiii~sH~~~~ 163 (178)
T cd03229 102 SGGQQQRVALARALA--MDPDVLLLDEPTSALD-------------PITRREVRALLKSLQ---AQLGITVVLVTHDLDE 163 (178)
T ss_pred CHHHHHHHHHHHHHH--CCCCEEEEeCCcccCC-------------HHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHH
Confidence 1223332 5889999998776552 133444556666664 4458999999999888
Q ss_pred hhhc
Q 024705 260 LLKH 263 (264)
Q Consensus 260 ~~~~ 263 (264)
+++.
T Consensus 164 ~~~~ 167 (178)
T cd03229 164 AARL 167 (178)
T ss_pred HHHh
Confidence 7643
No 79
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.23 E-value=1e-11 Score=102.49 Aligned_cols=127 Identities=15% Similarity=0.157 Sum_probs=82.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC--H--HHHHHcCCCccceeEeCCCCHHHHHH---
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD--P--SLAEAMGIDAENLLIAQPDSAENLLS--- 188 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~--~--~~~~~~g~~~~~l~~~~~~~~ee~~~--- 188 (264)
-+.+|+++.|+||+|||||||++++-..-.. ..+-++++.+.... . ...+.+|+..|++.+++..++-+++-
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~-~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap 102 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP-DSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAP 102 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHHHHHHHCCcCC-CCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhh
Confidence 4789999999999999999988877654433 44456676643322 1 45677999999988887665443321
Q ss_pred -------------HHHHHhh-----------------------------cCCccEEEEcCccccccccccCCCcCCCCcH
Q 024705 189 -------------VVDTLTK-----------------------------SGSIDVIVVDSVAALIPKCEIGVPINGMYSD 226 (264)
Q Consensus 189 -------------~i~~~~~-----------------------------~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~ 226 (264)
....+++ .-+|+++..|..+ +++++
T Consensus 103 ~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPT-------------SALDP 169 (240)
T COG1126 103 VKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPT-------------SALDP 169 (240)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCc-------------ccCCH
Confidence 1111100 1234555555444 34444
Q ss_pred HHHHHHHHHHHHHHHHHhccCcEEEEEcccchHh
Q 024705 227 AQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLL 260 (264)
Q Consensus 227 ~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~ 260 (264)
..+.++...++.| .+.|.|.+++||.....
T Consensus 170 Elv~EVL~vm~~L----A~eGmTMivVTHEM~FA 199 (240)
T COG1126 170 ELVGEVLDVMKDL----AEEGMTMIIVTHEMGFA 199 (240)
T ss_pred HHHHHHHHHHHHH----HHcCCeEEEEechhHHH
Confidence 6666777777777 46799999999987543
No 80
>PRK04296 thymidine kinase; Provisional
Probab=99.22 E-value=1.4e-10 Score=95.95 Aligned_cols=113 Identities=16% Similarity=0.240 Sum_probs=79.9
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEec--CCCCC-HHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhc
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV--ENALD-PSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKS 196 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~--e~~~~-~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~ 196 (264)
|.+++++||+|+||||+++.++..+...|.+|+++.. +.... ..+..++|+......+ ...+++...+.. ..
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~---~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPV---SSDTDIFELIEE--EG 76 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEe---CChHHHHHHHHh--hC
Confidence 7899999999999999999999999888999998843 33222 2355666765554322 345666666555 45
Q ss_pred CCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccch
Q 024705 197 GSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKV 258 (264)
Q Consensus 197 ~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~ 258 (264)
.++++|+||+++.+.. . .+.++.+.++..|++||++.+..+
T Consensus 77 ~~~dvviIDEaq~l~~--------------~-------~v~~l~~~l~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 77 EKIDCVLIDEAQFLDK--------------E-------QVVQLAEVLDDLGIPVICYGLDTD 117 (190)
T ss_pred CCCCEEEEEccccCCH--------------H-------HHHHHHHHHHHcCCeEEEEecCcc
Confidence 6889999999965421 1 123344444788999999988744
No 81
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.22 E-value=1.2e-10 Score=94.90 Aligned_cols=128 Identities=16% Similarity=0.204 Sum_probs=83.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC-HHHHHHcCCCccceeEeCCCCHHHHH-------
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD-PSLAEAMGIDAENLLIAQPDSAENLL------- 187 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~-~~~~~~~g~~~~~l~~~~~~~~ee~~------- 187 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.+...+.... ..+.+.+++.+++..+....++.+.+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~ 101 (173)
T cd03230 22 TVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMK 101 (173)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHH
Confidence 3679999999999999999999988876655555554432221111 23344567777765555444444432
Q ss_pred ---HHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhh
Q 024705 188 ---SVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLK 262 (264)
Q Consensus 188 ---~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~ 262 (264)
...+.++ .+++++++|...+-.. ....+.+.+.++++. ++ |.++|+++|....+..
T Consensus 102 qrv~laral~--~~p~illlDEPt~~LD-------------~~~~~~l~~~l~~~~---~~-g~tiii~th~~~~~~~ 160 (173)
T cd03230 102 QRLALAQALL--HDPELLILDEPTSGLD-------------PESRREFWELLRELK---KE-GKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHH--cCCCEEEEeCCccCCC-------------HHHHHHHHHHHHHHH---HC-CCEEEEECCCHHHHHH
Confidence 2223332 5899999998876652 133444666666664 44 8999999999887654
No 82
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.21 E-value=1.3e-10 Score=102.90 Aligned_cols=71 Identities=14% Similarity=0.220 Sum_probs=46.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH-HHHHHcCCCccceeEeCCCCHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP-SLAEAMGIDAENLLIAQPDSAENL 186 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~-~~~~~~g~~~~~l~~~~~~~~ee~ 186 (264)
-+++|+++.|.||||+|||||+..++....+..|.+.+...+..... ...+.+|+.+++..++...++.+.
T Consensus 15 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 86 (302)
T TIGR01188 15 KVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGREN 86 (302)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHH
Confidence 47899999999999999999998888766555666654433222222 334557777776554444444433
No 83
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.19 E-value=1.5e-10 Score=93.50 Aligned_cols=120 Identities=14% Similarity=0.287 Sum_probs=76.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCC-CC-CH--HHHHHcCCCccceeEeCCCCHHH--HHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN-AL-DP--SLAEAMGIDAENLLIAQPDSAEN--LLSV 189 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~-~~-~~--~~~~~~g~~~~~l~~~~~~~~ee--~~~~ 189 (264)
-+++|+++.|.||||+|||||+..++....+..+.+. ++... .. .. .+.+.+++.++ .+..+ .+..
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~-~~g~~~~~~~~~~~~~~~i~~~~q-------LS~G~~qrl~l 93 (163)
T cd03216 22 SVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEIL-VDGKEVSFASPRDARRAGIAMVYQ-------LSVGERQMVEI 93 (163)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE-ECCEECCcCCHHHHHhcCeEEEEe-------cCHHHHHHHHH
Confidence 3789999999999999999999988877655566654 44322 11 11 12223444332 34333 2333
Q ss_pred HHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhh
Q 024705 190 VDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLK 262 (264)
Q Consensus 190 i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~ 262 (264)
.+.++ .+++++++|+...-.. ....+.+.+.++++. +.+.|+|+++|....+..
T Consensus 94 aral~--~~p~illlDEP~~~LD-------------~~~~~~l~~~l~~~~----~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 94 ARALA--RNARLLILDEPTAALT-------------PAEVERLFKVIRRLR----AQGVAVIFISHRLDEVFE 147 (163)
T ss_pred HHHHh--cCCCEEEEECCCcCCC-------------HHHHHHHHHHHHHHH----HCCCEEEEEeCCHHHHHH
Confidence 44443 5899999998776552 134444556666653 448999999999887654
No 84
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.19 E-value=1.3e-10 Score=104.52 Aligned_cols=131 Identities=12% Similarity=0.133 Sum_probs=79.6
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC-HHHHHHcCCCccceeEeCCCCHHHHHHHHHHH--
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD-PSLAEAMGIDAENLLIAQPDSAENLLSVVDTL-- 193 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~-~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~-- 193 (264)
+++|+++.|.||||+|||||+..++....+..|.+.+...+.... ....+.+|+.+++..++...++.+.+......
T Consensus 64 i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~ 143 (340)
T PRK13536 64 VASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG 143 (340)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC
Confidence 789999999999999999999988887666666655544332211 13344577776665544444444333221110
Q ss_pred -------------h-----------------------------hcCCccEEEEcCccccccccccCCCcCCCCcHHHHHH
Q 024705 194 -------------T-----------------------------KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRI 231 (264)
Q Consensus 194 -------------~-----------------------------~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~ 231 (264)
. -..+|+++++|..+.-+ +...++.
T Consensus 144 ~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gL-------------D~~~r~~ 210 (340)
T PRK13536 144 MSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGL-------------DPHARHL 210 (340)
T ss_pred CCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCC-------------CHHHHHH
Confidence 0 01345566666544333 1233344
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcccchHhhhcC
Q 024705 232 MTQALRKIHYSLCQSHTLIIFLNQVKVLLLKHF 264 (264)
Q Consensus 232 i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~~ 264 (264)
+.+.++++ ++.|.|||+++|..+.++..|
T Consensus 211 l~~~l~~l----~~~g~tilisSH~l~e~~~~~ 239 (340)
T PRK13536 211 IWERLRSL----LARGKTILLTTHFMEEAERLC 239 (340)
T ss_pred HHHHHHHH----HhCCCEEEEECCCHHHHHHhC
Confidence 55555555 345999999999999987755
No 85
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.19 E-value=3.5e-11 Score=104.02 Aligned_cols=145 Identities=14% Similarity=0.141 Sum_probs=81.5
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEec---CCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV---ENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDT 192 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~---e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~ 192 (264)
-++.|+++.+.|||||||||++..|+....+..+++.+-+. +.+.-..+.+++|+..|+...+...++.+.+..-..
T Consensus 24 ~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~ 103 (345)
T COG1118 24 DIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLK 103 (345)
T ss_pred eecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccchHHhhhhhccc
Confidence 47899999999999999999888888776666665544332 222223567788988886655554443332221100
Q ss_pred Hhhc------------CCccEEEEcCcccccc---------------------ccccCCCcCCCCcHHHHHHHHHHHHHH
Q 024705 193 LTKS------------GSIDVIVVDSVAALIP---------------------KCEIGVPINGMYSDAQSRIMTQALRKI 239 (264)
Q Consensus 193 ~~~~------------~~~~~vvIDsl~~~~~---------------------~~~~~~~~~~~~~~~q~r~i~~~L~~l 239 (264)
..+. .-.+++-++.+..-+| .--+-++|.+.++..-.+++.+.|+++
T Consensus 104 ~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~ 183 (345)
T COG1118 104 VRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKL 183 (345)
T ss_pred ccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHH
Confidence 0000 0001111222222221 000111233333334444566677777
Q ss_pred HHHHhccCcEEEEEcccchHhhhc
Q 024705 240 HYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 240 ~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
. .+.|+|++++||+-.+..+.
T Consensus 184 ~---~~~~~ttvfVTHD~eea~~l 204 (345)
T COG1118 184 H---DRLGVTTVFVTHDQEEALEL 204 (345)
T ss_pred H---HhhCceEEEEeCCHHHHHhh
Confidence 6 67799999999998876553
No 86
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.19 E-value=1.4e-10 Score=97.45 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=30.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.|
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 59 (213)
T cd03259 22 TVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILI 59 (213)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 47899999999999999999998888766555555543
No 87
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.19 E-value=6.4e-11 Score=99.25 Aligned_cols=131 Identities=14% Similarity=0.166 Sum_probs=85.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC-H----HHHHHcCCCccceeEeCCCCHHHHH---
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD-P----SLAEAMGIDAENLLIAQPDSAENLL--- 187 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~-~----~~~~~~g~~~~~l~~~~~~~~ee~~--- 187 (264)
-+++|+++.|.||+|+||||++..++....+..+.+.++..+...- . ...+++|+..|.=.++...++.|++
T Consensus 30 ~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafp 109 (263)
T COG1127 30 DVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFP 109 (263)
T ss_pred eecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhhee
Confidence 4889999999999999999999999988887777776665543321 1 3466788877643333322221111
Q ss_pred -------------H--------------------------------HHHHHhhcCCccEEEEcCccccccccccCCCcCC
Q 024705 188 -------------S--------------------------------VVDTLTKSGSIDVIVVDSVAALIPKCEIGVPING 222 (264)
Q Consensus 188 -------------~--------------------------------~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~ 222 (264)
+ ..+.+ .-+|++++.|..++-.
T Consensus 110 lre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAi--aldPell~~DEPtsGL----------- 176 (263)
T COG1127 110 LREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAI--ALDPELLFLDEPTSGL----------- 176 (263)
T ss_pred hHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHH--hcCCCEEEecCCCCCC-----------
Confidence 0 01111 1356777777655433
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhcC
Q 024705 223 MYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKHF 264 (264)
Q Consensus 223 ~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~~ 264 (264)
+......+.+.++++. +..|.|++++||....+.+.|
T Consensus 177 --DPI~a~~~~~LI~~L~---~~lg~T~i~VTHDl~s~~~i~ 213 (263)
T COG1127 177 --DPISAGVIDELIRELN---DALGLTVIMVTHDLDSLLTIA 213 (263)
T ss_pred --CcchHHHHHHHHHHHH---HhhCCEEEEEECChHHHHhhh
Confidence 2233445667777776 668999999999998876543
No 88
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.17 E-value=6.4e-11 Score=98.74 Aligned_cols=144 Identities=18% Similarity=0.193 Sum_probs=91.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH--HHH-HHcCCCccceeEeCCCCHHHHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLA-EAMGIDAENLLIAQPDSAENLLSVVDT 192 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~--~~~-~~~g~~~~~l~~~~~~~~ee~~~~i~~ 192 (264)
-+++|+++.+.|+||+||||++..++.......+.+.|-..+.+..+ .++ ..+++.++.-.++...+++|++..-..
T Consensus 25 ~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~ 104 (237)
T COG0410 25 EVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAY 104 (237)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhh
Confidence 36799999999999999999999999877766777777655554333 333 346678888888888899888876443
Q ss_pred HhhcCCccEEEEcCcccccccc-ccCCCcCCCCcHHHHHH--------------------------HHHHHHHHHHHH-h
Q 024705 193 LTKSGSIDVIVVDSVAALIPKC-EIGVPINGMYSDAQSRI--------------------------MTQALRKIHYSL-C 244 (264)
Q Consensus 193 ~~~~~~~~~vvIDsl~~~~~~~-~~~~~~~~~~~~~q~r~--------------------------i~~~L~~l~~~l-~ 244 (264)
.........-.+|.+-.++|+. +..+.....++|.+++. +.+.+.+..+.+ +
T Consensus 105 ~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~ 184 (237)
T COG0410 105 ARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRK 184 (237)
T ss_pred cccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHH
Confidence 3222122222267777777642 33344444455444442 112222222233 4
Q ss_pred ccCcEEEEEcccchH
Q 024705 245 QSHTLIIFLNQVKVL 259 (264)
Q Consensus 245 ~~g~tVi~i~h~~~~ 259 (264)
+.|+||+++-|....
T Consensus 185 ~~g~tIlLVEQn~~~ 199 (237)
T COG0410 185 EGGMTILLVEQNARF 199 (237)
T ss_pred cCCcEEEEEeccHHH
Confidence 668999999997654
No 89
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.17 E-value=1.6e-10 Score=97.06 Aligned_cols=38 Identities=21% Similarity=0.271 Sum_probs=31.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||+|||||+..++....+.++.+.|
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~ 59 (213)
T cd03301 22 DIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYI 59 (213)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 37899999999999999999998888866555555544
No 90
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.16 E-value=3.1e-10 Score=96.86 Aligned_cols=68 Identities=19% Similarity=0.178 Sum_probs=42.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC-C----HHHHHHcCCCccceeEeCCCCH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-D----PSLAEAMGIDAENLLIAQPDSA 183 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~-~----~~~~~~~g~~~~~l~~~~~~~~ 183 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.+...+... . ..+.+.+++.+++..++...++
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 94 (235)
T cd03261 22 DVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTV 94 (235)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcH
Confidence 378999999999999999999998887665555555443322111 1 1223446666665444333333
No 91
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.16 E-value=4e-10 Score=95.17 Aligned_cols=62 Identities=18% Similarity=0.273 Sum_probs=39.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC-HHHHHHcCCCccceeE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD-PSLAEAMGIDAENLLI 177 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~-~~~~~~~g~~~~~l~~ 177 (264)
-+.+|+++.|.||||+|||||+..++....+..+.+.+...+.... ....+.+++.+++..+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~ 84 (220)
T cd03265 22 RVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSV 84 (220)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccc
Confidence 4779999999999999999999988876555555554432221111 1233446665555433
No 92
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.16 E-value=2.9e-10 Score=92.99 Aligned_cols=116 Identities=14% Similarity=0.148 Sum_probs=74.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHH--HHHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAE--NLLSVVDTL 193 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~e--e~~~~i~~~ 193 (264)
-+++|+++.|.||||+|||||+..++....+.++.+.+-.. .+++.++... .+.- +.+...+.+
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~----------~i~~~~q~~~----LSgGq~qrv~laral 86 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI----------TPVYKPQYID----LSGGELQRVAIAAAL 86 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE----------EEEEEcccCC----CCHHHHHHHHHHHHH
Confidence 37899999999999999999998888766665666554221 1233232211 3332 233344444
Q ss_pred hhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 194 TKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 194 ~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
+ .+++++++|+...-... ...+.+...+.++. ++.+.+||+++|....+...
T Consensus 87 ~--~~p~lllLDEPts~LD~-------------~~~~~l~~~l~~~~---~~~~~tiiivsH~~~~~~~~ 138 (177)
T cd03222 87 L--RNATFYLFDEPSAYLDI-------------EQRLNAARAIRRLS---EEGKKTALVVEHDLAVLDYL 138 (177)
T ss_pred h--cCCCEEEEECCcccCCH-------------HHHHHHHHHHHHHH---HcCCCEEEEEECCHHHHHHh
Confidence 3 47899999987765521 33344555666554 44458999999998877643
No 93
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.15 E-value=2.7e-10 Score=95.56 Aligned_cols=37 Identities=27% Similarity=0.326 Sum_probs=30.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~ 152 (264)
-+.+|+++.|.||||+|||||+..++....+..+.+.
T Consensus 20 ~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~ 56 (211)
T cd03298 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVL 56 (211)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence 4789999999999999999999888776655555543
No 94
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.15 E-value=2.1e-10 Score=103.83 Aligned_cols=71 Identities=14% Similarity=0.149 Sum_probs=46.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC-CCHHHHHHcCCCccceeEeCCCCHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA-LDPSLAEAMGIDAENLLIAQPDSAENLL 187 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~-~~~~~~~~~g~~~~~l~~~~~~~~ee~~ 187 (264)
-+++|+++.|.||||||||||+..++....+..+.+ +++.+.. ......+.+|+.+|+..++...++.+.+
T Consensus 26 ~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I-~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi 97 (356)
T PRK11650 26 DVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEI-WIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENM 97 (356)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEE-EECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHH
Confidence 377999999999999999998888887665555554 4443322 1112235577777766655554544433
No 95
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.15 E-value=4.9e-10 Score=91.24 Aligned_cols=125 Identities=20% Similarity=0.252 Sum_probs=81.0
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC--C-HHHHHHcCCCccceeEeCCCCHHHH------
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL--D-PSLAEAMGIDAENLLIAQPDSAENL------ 186 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~--~-~~~~~~~g~~~~~l~~~~~~~~ee~------ 186 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.+ +.+... . ..+.+.+++.+++..++.. ++.+.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~-~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~lLS~G~ 101 (173)
T cd03246 24 SIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRL-DGADISQWDPNELGDHVGYLPQDDELFSG-SIAENILSGGQ 101 (173)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEE-CCEEcccCCHHHHHhheEEECCCCccccC-cHHHHCcCHHH
Confidence 36799999999999999999999888876655665544 332211 1 1334557777776554432 44432
Q ss_pred ---HHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhh
Q 024705 187 ---LSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLL 261 (264)
Q Consensus 187 ---~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~ 261 (264)
+...+.++ .+++++++|....-... ...+.+.+.++++ ++.|.++|+++|..+.++
T Consensus 102 ~qrv~la~al~--~~p~~lllDEPt~~LD~-------------~~~~~l~~~l~~~----~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 102 RQRLGLARALY--GNPRILVLDEPNSHLDV-------------EGERALNQAIAAL----KAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHh--cCCCEEEEECCccccCH-------------HHHHHHHHHHHHH----HhCCCEEEEEeCCHHHHH
Confidence 22233333 58899999987766521 3334455566655 345899999999887653
No 96
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.15 E-value=4.5e-11 Score=103.53 Aligned_cols=142 Identities=15% Similarity=0.186 Sum_probs=91.1
Q ss_pred cHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC---CH--HHHHHcCCCccceeEeC
Q 024705 105 SLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL---DP--SLAEAMGIDAENLLIAQ 179 (264)
Q Consensus 105 ~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~---~~--~~~~~~g~~~~~l~~~~ 179 (264)
+..||..-= -+++|+++.|.|++|+|||||.+.+-..-.+..+++.+...+-.. .. ...+.+|+-+|++.+..
T Consensus 19 ~~al~~vsL--~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLs 96 (339)
T COG1135 19 VTALDDVSL--EIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLS 96 (339)
T ss_pred eeeeccceE--EEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccc
Confidence 455665532 589999999999999999997776544434455666554433221 11 34667899988877665
Q ss_pred CCCHHHHH---------------HHHHHHh-----------------------------hcCCccEEEEcCccccccccc
Q 024705 180 PDSAENLL---------------SVVDTLT-----------------------------KSGSIDVIVVDSVAALIPKCE 215 (264)
Q Consensus 180 ~~~~ee~~---------------~~i~~~~-----------------------------~~~~~~~vvIDsl~~~~~~~~ 215 (264)
..++.+.+ ..+..++ -..+|+++..|..++-.
T Consensus 97 srTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSAL---- 172 (339)
T COG1135 97 SRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSAL---- 172 (339)
T ss_pred cchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccC----
Confidence 44433222 1111110 01356677777665544
Q ss_pred cCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhcC
Q 024705 216 IGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKHF 264 (264)
Q Consensus 216 ~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~~ 264 (264)
++.-.+.+...|+++. ++.|.||++|||.++-+.+.|
T Consensus 173 ---------DP~TT~sIL~LL~~In---~~lglTIvlITHEm~Vvk~ic 209 (339)
T COG1135 173 ---------DPETTQSILELLKDIN---RELGLTIVLITHEMEVVKRIC 209 (339)
T ss_pred ---------ChHHHHHHHHHHHHHH---HHcCCEEEEEechHHHHHHHh
Confidence 2344455777888887 889999999999999888766
No 97
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.15 E-value=2.6e-10 Score=103.13 Aligned_cols=71 Identities=18% Similarity=0.212 Sum_probs=47.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC-HHHHHHcCCCccceeEeCCCCHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD-PSLAEAMGIDAENLLIAQPDSAENLL 187 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~-~~~~~~~g~~~~~l~~~~~~~~ee~~ 187 (264)
-+++|+++.|.||||||||||+..++....+..+.+. ++.+.... ....+.+|+.+|+..+++..++.+.+
T Consensus 26 ~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~-i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi 97 (353)
T TIGR03265 26 SVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIY-QGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNI 97 (353)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEE-ECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHH
Confidence 3678999999999999999998888886655555554 44332211 12344577777776666555555444
No 98
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.14 E-value=2.7e-10 Score=104.09 Aligned_cols=139 Identities=17% Similarity=0.269 Sum_probs=89.8
Q ss_pred CcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC-H--HHHHHcCCCccceeEeCC
Q 024705 104 GSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD-P--SLAEAMGIDAENLLIAQP 180 (264)
Q Consensus 104 G~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~-~--~~~~~~g~~~~~l~~~~~ 180 (264)
|+...|..-= .+++|+++.|.|+||+|||||+..+.....+..+.+.+-..+-... + ..+..+|+..|.+.+++.
T Consensus 16 ~~~And~V~l--~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~ 93 (501)
T COG3845 16 GVVANDDVSL--SVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPT 93 (501)
T ss_pred CEEecCceee--eecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccc
Confidence 6666776643 6899999999999999999988888777766655544333332222 2 233334555554433332
Q ss_pred CCH-------------------------------------------------HHHHHHHHHHhhcCCccEEEEcCccccc
Q 024705 181 DSA-------------------------------------------------ENLLSVVDTLTKSGSIDVIVVDSVAALI 211 (264)
Q Consensus 181 ~~~-------------------------------------------------ee~~~~i~~~~~~~~~~~vvIDsl~~~~ 211 (264)
.++ .+-+++++.+. .+++++++|..++.+
T Consensus 94 lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLy--r~a~iLILDEPTaVL 171 (501)
T COG3845 94 LTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALY--RGARLLILDEPTAVL 171 (501)
T ss_pred cchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHh--cCCCEEEEcCCcccC
Confidence 221 22334444443 578999999998888
Q ss_pred cccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 212 PKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 212 ~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
+. .....+...++.+ ++.|++||+|||-.+++-..
T Consensus 172 TP-------------~E~~~lf~~l~~l----~~~G~tIi~ITHKL~Ev~~i 206 (501)
T COG3845 172 TP-------------QEADELFEILRRL----AAEGKTIIFITHKLKEVMAI 206 (501)
T ss_pred CH-------------HHHHHHHHHHHHH----HHCCCEEEEEeccHHHHHHh
Confidence 53 4445455555555 78899999999988776543
No 99
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.14 E-value=5e-10 Score=94.36 Aligned_cols=64 Identities=13% Similarity=0.198 Sum_probs=42.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC-HHHHHHcCCCccceeEeC
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD-PSLAEAMGIDAENLLIAQ 179 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~-~~~~~~~g~~~~~l~~~~ 179 (264)
-+++|+++.|.|+||+|||||+..++....+..+.+.+.+.+.... ..+.+.+++.+++..++.
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (218)
T cd03266 27 TVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYD 91 (218)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCc
Confidence 4779999999999999999999888876655566655433222111 123445666666544433
No 100
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.14 E-value=7.7e-11 Score=104.69 Aligned_cols=72 Identities=14% Similarity=0.130 Sum_probs=53.0
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLL 187 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~ 187 (264)
-++.|+++.|.|||||||||++..+|.-....+|.+.+-+.+.+.-+...+.+++.+|+..+++..++.+.+
T Consensus 25 ~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Ni 96 (338)
T COG3839 25 DIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENI 96 (338)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHh
Confidence 377999999999999999998888887666666655544444433345567788888888888877665544
No 101
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.14 E-value=4.3e-10 Score=91.39 Aligned_cols=125 Identities=16% Similarity=0.266 Sum_probs=79.7
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC--C-HHHHHHcCCCccceeEeCCCCHHHH------
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL--D-PSLAEAMGIDAENLLIAQPDSAENL------ 186 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~--~-~~~~~~~g~~~~~l~~~~~~~~ee~------ 186 (264)
-+++|+++.|.||||+|||||+..++....+..+.+. ++.+... . ..+.+.+++.+++..+.+ .++.+.
T Consensus 24 ~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e~lLS~G~ 101 (171)
T cd03228 24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL-IDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRENILSGGQ 101 (171)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEE-ECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHHHHhhCHHH
Confidence 3789999999999999999999988887665566654 4433211 1 133455777666654443 344332
Q ss_pred ---HHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhh
Q 024705 187 ---LSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLK 262 (264)
Q Consensus 187 ---~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~ 262 (264)
+...+.++ .+++++++|...+-... .....+.+.++++ ++ +.++|+++|..+.++.
T Consensus 102 ~~rl~la~al~--~~p~llllDEP~~gLD~-------------~~~~~l~~~l~~~----~~-~~tii~~sh~~~~~~~ 160 (171)
T cd03228 102 RQRIAIARALL--RDPPILILDEATSALDP-------------ETEALILEALRAL----AK-GKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHh--cCCCEEEEECCCcCCCH-------------HHHHHHHHHHHHh----cC-CCEEEEEecCHHHHHh
Confidence 22233332 58899999987765521 2233344555544 33 6999999999887754
No 102
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.14 E-value=3.7e-10 Score=95.16 Aligned_cols=38 Identities=29% Similarity=0.313 Sum_probs=31.5
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.|
T Consensus 26 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~ 63 (218)
T cd03255 26 SIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRV 63 (218)
T ss_pred EEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEE
Confidence 47899999999999999999999988776555665544
No 103
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.13 E-value=6e-10 Score=94.89 Aligned_cols=64 Identities=22% Similarity=0.312 Sum_probs=41.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC-C-H---HHHHHcCCCccceeEeC
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-D-P---SLAEAMGIDAENLLIAQ 179 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~-~-~---~~~~~~g~~~~~l~~~~ 179 (264)
-+++|+++.|.||||||||||+..++....+..+.+.+...+... . . ...+.+++.+++..++.
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 27 SVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 478999999999999999999998887766556665443322111 1 1 12345666666544443
No 104
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.13 E-value=4.8e-10 Score=92.04 Aligned_cols=129 Identities=14% Similarity=0.131 Sum_probs=81.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC-C-H-HHHHHcCCCccce---eEeCCCCHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-D-P-SLAEAMGIDAENL---LIAQPDSAENLLSV 189 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~-~-~-~~~~~~g~~~~~l---~~~~~~~~ee~~~~ 189 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.+...+... . . .+.+.+++.+++. .+....++.+.+..
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~ 101 (182)
T cd03215 22 EVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIAL 101 (182)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHH
Confidence 478999999999999999999988888766556665443322211 1 1 2334567766653 23334455544322
Q ss_pred --------------HHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcc
Q 024705 190 --------------VDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQ 255 (264)
Q Consensus 190 --------------i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h 255 (264)
.+.+ -.+++++++|...+-.. ....+.+.+.++++. +.+.++|+++|
T Consensus 102 ~~~LS~G~~qrl~la~al--~~~p~llllDEP~~~LD-------------~~~~~~l~~~l~~~~----~~~~tiii~sh 162 (182)
T cd03215 102 SSLLSGGNQQKVVLARWL--ARDPRVLILDEPTRGVD-------------VGAKAEIYRLIRELA----DAGKAVLLISS 162 (182)
T ss_pred HhhcCHHHHHHHHHHHHH--ccCCCEEEECCCCcCCC-------------HHHHHHHHHHHHHHH----HCCCEEEEEeC
Confidence 1222 25889999998776552 133444556666553 34899999999
Q ss_pred cchHhhhc
Q 024705 256 VKVLLLKH 263 (264)
Q Consensus 256 ~~~~~~~~ 263 (264)
..+.+.+.
T Consensus 163 ~~~~~~~~ 170 (182)
T cd03215 163 ELDELLGL 170 (182)
T ss_pred CHHHHHHh
Confidence 98877653
No 105
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.13 E-value=5e-10 Score=95.79 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=31.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||||||||+..++....+..+.+.+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 60 (241)
T cd03256 23 SINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60 (241)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEE
Confidence 47899999999999999999999888766555555544
No 106
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.13 E-value=4.4e-10 Score=99.67 Aligned_cols=70 Identities=14% Similarity=0.141 Sum_probs=44.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC-HHHHHHcCCCccceeEeCCCCHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD-PSLAEAMGIDAENLLIAQPDSAEN 185 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~-~~~~~~~g~~~~~l~~~~~~~~ee 185 (264)
-+++|+++.|.||||+|||||+..++....+..|.+.+...+.... ....+.+|+.+++..++...++.+
T Consensus 26 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e 96 (303)
T TIGR01288 26 TIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRE 96 (303)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCCcHHH
Confidence 4789999999999999999999888876655556555433222111 123445676666544443334433
No 107
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.12 E-value=3.3e-10 Score=103.04 Aligned_cols=70 Identities=16% Similarity=0.137 Sum_probs=43.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAEN 185 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee 185 (264)
-+++|+++.|.||||||||||+..++....+..+.+.|...+........+.+|+.+++..++...++.+
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~e 94 (369)
T PRK11000 25 DIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAE 94 (369)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCHHH
Confidence 3779999999999999999999888876555555554432222111112234666666554444444433
No 108
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.12 E-value=3.9e-10 Score=101.81 Aligned_cols=71 Identities=17% Similarity=0.201 Sum_probs=46.4
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC-CHHHHHHcCCCccceeEeCCCCHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-DPSLAEAMGIDAENLLIAQPDSAENLL 187 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~-~~~~~~~~g~~~~~l~~~~~~~~ee~~ 187 (264)
-+++|+++.|.||||||||||+..++....+..+.+ +++..... .....+.+|+.+++..+++..++.+.+
T Consensus 28 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I-~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi 99 (351)
T PRK11432 28 TIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI-FIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENV 99 (351)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEE-EECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHH
Confidence 477999999999999999999888887665555554 44433221 122334577777766555554544433
No 109
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.11 E-value=3.8e-10 Score=95.33 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=29.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~ 152 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~ 62 (220)
T cd03293 26 SVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVL 62 (220)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 4779999999999999999999888876554455443
No 110
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.11 E-value=4.5e-10 Score=101.81 Aligned_cols=71 Identities=17% Similarity=0.260 Sum_probs=47.0
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcC--CeEEEEecCCCC-CHHHHHHcCCCccceeEeCCCCHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLG--GYCAYLDVENAL-DPSLAEAMGIDAENLLIAQPDSAENLL 187 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g--~~v~~~~~e~~~-~~~~~~~~g~~~~~l~~~~~~~~ee~~ 187 (264)
-+++|+++.|.||||||||||+..++....+.. +.+ +++.+... .....+.+|+.+++..++...++.+.+
T Consensus 27 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i-~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl 100 (362)
T TIGR03258 27 EIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRI-AIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNV 100 (362)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEE-EECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHH
Confidence 377999999999999999998888887655444 554 44433221 122345577777776666555555444
No 111
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.11 E-value=7.3e-10 Score=94.93 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=30.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||||||||+..++....+..+.+.+
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (243)
T TIGR02315 24 NINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL 61 (243)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEE
Confidence 37899999999999999999998888765555565544
No 112
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.11 E-value=4.7e-10 Score=102.10 Aligned_cols=69 Identities=14% Similarity=0.149 Sum_probs=44.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC-CHHHHHHcCCCccceeEeCCCCHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-DPSLAEAMGIDAENLLIAQPDSAEN 185 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~-~~~~~~~~g~~~~~l~~~~~~~~ee 185 (264)
-+++|+++.|.||||||||||+..++....+..+.+ +++.+... .....+.+|+.+++..++...++.+
T Consensus 36 ~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I-~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~e 105 (375)
T PRK09452 36 TINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI-MLDGQDITHVPAENRHVNTVFQSYALFPHMTVFE 105 (375)
T ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE-EECCEECCCCCHHHCCEEEEecCcccCCCCCHHH
Confidence 477999999999999999999988887665555554 44433221 1123345677766655554444443
No 113
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.11 E-value=5.5e-10 Score=93.90 Aligned_cols=38 Identities=26% Similarity=0.346 Sum_probs=31.4
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+.+|+++.|.||||+|||||+..++....+..+.+.+
T Consensus 20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 57 (213)
T TIGR01277 20 NVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKV 57 (213)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 37799999999999999999999998876655555543
No 114
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.11 E-value=9.6e-10 Score=92.04 Aligned_cols=127 Identities=15% Similarity=0.153 Sum_probs=72.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC-HHHHHHcCCCccceeEeCCCCHHHHHHH-----
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD-PSLAEAMGIDAENLLIAQPDSAENLLSV----- 189 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~-~~~~~~~g~~~~~l~~~~~~~~ee~~~~----- 189 (264)
-+++|+++.|.||||+|||||+..++....+..+.+. ++.+.... ..+.+.+++.+++..+....++.+.+..
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~-~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~ 100 (208)
T cd03268 22 HVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT-FDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLL 100 (208)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEE-ECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhc
Confidence 3679999999999999999999888876655555554 43322111 1223345655554333322222222111
Q ss_pred -------------------------------------HHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHH
Q 024705 190 -------------------------------------VDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIM 232 (264)
Q Consensus 190 -------------------------------------i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i 232 (264)
++.+ ..+++++++|...+-.. ....+.+
T Consensus 101 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al--~~~p~llllDEPt~~LD-------------~~~~~~l 165 (208)
T cd03268 101 GIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALAL--LGNPDLLILDEPTNGLD-------------PDGIKEL 165 (208)
T ss_pred CCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHH--hcCCCEEEECCCcccCC-------------HHHHHHH
Confidence 0111 13566777776554441 1333334
Q ss_pred HHHHHHHHHHHhccCcEEEEEcccchHhhh
Q 024705 233 TQALRKIHYSLCQSHTLIIFLNQVKVLLLK 262 (264)
Q Consensus 233 ~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~ 262 (264)
.+.++++. +.|.++|+++|....+..
T Consensus 166 ~~~l~~~~----~~~~tii~~tH~~~~~~~ 191 (208)
T cd03268 166 RELILSLR----DQGITVLISSHLLSEIQK 191 (208)
T ss_pred HHHHHHHH----HCCCEEEEEcCCHHHHHH
Confidence 45555553 368999999999887654
No 115
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.10 E-value=6.6e-10 Score=93.58 Aligned_cols=67 Identities=15% Similarity=0.239 Sum_probs=42.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC--CH----HHHHHcCCCccceeEeCCCCH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL--DP----SLAEAMGIDAENLLIAQPDSA 183 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~--~~----~~~~~~g~~~~~l~~~~~~~~ 183 (264)
-+++|+++.|.||||||||||+..++....+..+.+. ++..... .. .+.+.+++.+++..++...++
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~-~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 97 (216)
T TIGR00960 25 HITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIR-FNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTV 97 (216)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE-ECCEehhhcChhHHHHHHHhceEEecCccccccccH
Confidence 4789999999999999999999888876555555554 4332211 11 133456766665544433333
No 116
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.10 E-value=3.1e-11 Score=98.34 Aligned_cols=57 Identities=28% Similarity=0.314 Sum_probs=37.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEec-CCC--CCHHHHHHcCCCcc
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV-ENA--LDPSLAEAMGIDAE 173 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~-e~~--~~~~~~~~~g~~~~ 173 (264)
-+++|.++.|.||||+|||||+..++... +...+.++++. +.. .....++.+.+..|
T Consensus 23 ~i~~g~iTs~IGPNGAGKSTLLS~~sRL~-~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ 82 (252)
T COG4604 23 DIPKGGITSIIGPNGAGKSTLLSMMSRLL-KKDSGEITIDGLELTSTPSKELAKKLSILKQ 82 (252)
T ss_pred eecCCceeEEECCCCccHHHHHHHHHHhc-cccCceEEEeeeecccCChHHHHHHHHHHHh
Confidence 48899999999999999999665555544 44444555554 332 33356666655444
No 117
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.10 E-value=5.1e-10 Score=95.79 Aligned_cols=38 Identities=29% Similarity=0.456 Sum_probs=30.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.|
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (239)
T cd03296 24 DIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILF 61 (239)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 47799999999999999999999988766555555443
No 118
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.10 E-value=6e-10 Score=100.22 Aligned_cols=70 Identities=16% Similarity=0.195 Sum_probs=45.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC-C-HH---HHHHcCCCccceeEeCCCCHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-D-PS---LAEAMGIDAENLLIAQPDSAEN 185 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~-~-~~---~~~~~g~~~~~l~~~~~~~~ee 185 (264)
-+++|+++.|.||||||||||+..++....+..+.+.+-..+... . .. ..+.+|+.+++..+....++.+
T Consensus 27 ~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~e 101 (343)
T TIGR02314 27 HVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFG 101 (343)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHH
Confidence 378999999999999999999888887665555555443322211 1 11 2345787777665554444443
No 119
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.10 E-value=5.5e-10 Score=100.67 Aligned_cols=133 Identities=14% Similarity=0.196 Sum_probs=77.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC-C-H---HHHHHcCCCccceeEeCCCCHHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-D-P---SLAEAMGIDAENLLIAQPDSAENLLSVV 190 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~-~-~---~~~~~~g~~~~~l~~~~~~~~ee~~~~i 190 (264)
-+++|+++.|.||||||||||+..++....+..+.+.|...+... . . ...+.+|+.+++..++...++.+.+...
T Consensus 27 ~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~ 106 (343)
T PRK11153 27 HIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALP 106 (343)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHH
Confidence 478999999999999999999988887665556655543332211 1 1 1234567666654443333333222111
Q ss_pred H---------------HHh-----------------------------hcCCccEEEEcCccccccccccCCCcCCCCcH
Q 024705 191 D---------------TLT-----------------------------KSGSIDVIVVDSVAALIPKCEIGVPINGMYSD 226 (264)
Q Consensus 191 ~---------------~~~-----------------------------~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~ 226 (264)
. .++ -..+|+++++|..++-. +.
T Consensus 107 ~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~L-------------D~ 173 (343)
T PRK11153 107 LELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSAL-------------DP 173 (343)
T ss_pred HHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC-------------CH
Confidence 0 000 01345566666544333 22
Q ss_pred HHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhcC
Q 024705 227 AQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKHF 264 (264)
Q Consensus 227 ~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~~ 264 (264)
...+.+.+.|+++. ++.|+|||+++|..+.+...|
T Consensus 174 ~~~~~l~~~L~~l~---~~~g~tiilvtH~~~~i~~~~ 208 (343)
T PRK11153 174 ATTRSILELLKDIN---RELGLTIVLITHEMDVVKRIC 208 (343)
T ss_pred HHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHHHhC
Confidence 33344555666554 566999999999998876543
No 120
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.10 E-value=9.5e-10 Score=92.21 Aligned_cols=59 Identities=24% Similarity=0.191 Sum_probs=39.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC--CHHHHHHcCCCccc
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL--DPSLAEAMGIDAEN 174 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~--~~~~~~~~g~~~~~ 174 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.|...+... ...+.+.+++.+++
T Consensus 23 ~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~ 83 (211)
T cd03225 23 TIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQN 83 (211)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecC
Confidence 377999999999999999999988887665555655443322111 11234456665554
No 121
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.09 E-value=8.3e-10 Score=94.04 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=31.4
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+.+|++++|.||||+|||||+..++....+..+.+.|
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 58 (232)
T PRK10771 21 TVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTL 58 (232)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 47899999999999999999999888776655665544
No 122
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.09 E-value=6.1e-10 Score=101.47 Aligned_cols=72 Identities=19% Similarity=0.229 Sum_probs=48.3
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC-CHHHHHHcCCCccceeEeCCCCHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-DPSLAEAMGIDAENLLIAQPDSAENLLS 188 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~-~~~~~~~~g~~~~~l~~~~~~~~ee~~~ 188 (264)
-+++|+++.|.||||||||||+..++.......+.+ +++.+... .....+.+|+.+++..++...++.+.+.
T Consensus 41 ~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I-~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~ 113 (377)
T PRK11607 41 TIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQI-MLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIA 113 (377)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE-EECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHH
Confidence 377999999999999999999888887655545544 45543321 1233456788777766666555555443
No 123
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.09 E-value=9.2e-10 Score=91.32 Aligned_cols=126 Identities=13% Similarity=0.168 Sum_probs=79.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHH--hhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHH----
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEA--QKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSV---- 189 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~--~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~---- 189 (264)
-+++|+++.|.||||+|||||+..++... .+..+.+.| +.+........+.+++.+++..+....++.+.+..
T Consensus 31 ~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~-~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~ 109 (194)
T cd03213 31 KAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLI-NGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL 109 (194)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEE-CCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh
Confidence 47899999999999999999998888766 555555544 33322111233456776666554444454443321
Q ss_pred -------------HHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEccc
Q 024705 190 -------------VDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQV 256 (264)
Q Consensus 190 -------------i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~ 256 (264)
.+.++ .+++++++|....-.. ....+.+.+.++++ ++.+.|+|+++|.
T Consensus 110 ~~LS~G~~qrv~laral~--~~p~illlDEP~~~LD-------------~~~~~~l~~~l~~~----~~~~~tiii~sh~ 170 (194)
T cd03213 110 RGLSGGERKRVSIALELV--SNPSLLFLDEPTSGLD-------------SSSALQVMSLLRRL----ADTGRTIICSIHQ 170 (194)
T ss_pred ccCCHHHHHHHHHHHHHH--cCCCEEEEeCCCcCCC-------------HHHHHHHHHHHHHH----HhCCCEEEEEecC
Confidence 12222 5789999998776552 13334455556555 3348999999998
Q ss_pred ch-Hhh
Q 024705 257 KV-LLL 261 (264)
Q Consensus 257 ~~-~~~ 261 (264)
.. .+.
T Consensus 171 ~~~~~~ 176 (194)
T cd03213 171 PSSEIF 176 (194)
T ss_pred chHHHH
Confidence 75 444
No 124
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.08 E-value=1.2e-09 Score=92.88 Aligned_cols=63 Identities=21% Similarity=0.235 Sum_probs=41.5
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC-CH--HHHHHcCCCccceeEe
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-DP--SLAEAMGIDAENLLIA 178 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~-~~--~~~~~~g~~~~~l~~~ 178 (264)
-+++|+++.|.||||||||||+..++....+..+.+.+...+... .. ...+.+++.+++..++
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 87 (230)
T TIGR03410 22 EVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIF 87 (230)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCccc
Confidence 478999999999999999999998887766666665543322111 11 1234466666654433
No 125
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.08 E-value=8.7e-10 Score=97.66 Aligned_cols=72 Identities=19% Similarity=0.193 Sum_probs=47.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH-HHHHHcCCCccceeEeCCCCHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP-SLAEAMGIDAENLLIAQPDSAENLL 187 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~-~~~~~~g~~~~~l~~~~~~~~ee~~ 187 (264)
-+++|++++|.||||+|||||+..++....+..|.+.+...+..... ...+.+|+.+++..++...++.+.+
T Consensus 24 ~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l 96 (301)
T TIGR03522 24 EAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYL 96 (301)
T ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHH
Confidence 47899999999999999999998888765555665544332221111 3345577777765555444554444
No 126
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.08 E-value=7e-10 Score=100.34 Aligned_cols=131 Identities=17% Similarity=0.222 Sum_probs=75.7
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC-------CHHHHHHcCCCccceeEeCCCCHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-------DPSLAEAMGIDAENLLIAQPDSAENLLS 188 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~-------~~~~~~~~g~~~~~l~~~~~~~~ee~~~ 188 (264)
-+++|+++.|.||||||||||+..++....+..+.+. ++.+... .....+.+|+.+++..++...++.+.+.
T Consensus 20 ~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~-~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~ 98 (352)
T PRK11144 20 TLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIV-LNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLR 98 (352)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE-ECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHHHHH
Confidence 3679999999999999999999888876555555554 4332211 1122345666666654444444433221
Q ss_pred H---------HHHHh-----------------------------hcCCccEEEEcCccccccccccCCCcCCCCcHHHHH
Q 024705 189 V---------VDTLT-----------------------------KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSR 230 (264)
Q Consensus 189 ~---------i~~~~-----------------------------~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r 230 (264)
. +..++ -..+++++++|...+-. +....+
T Consensus 99 ~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~L-------------D~~~~~ 165 (352)
T PRK11144 99 YGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASL-------------DLPRKR 165 (352)
T ss_pred hhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC-------------CHHHHH
Confidence 1 00000 01345566666544333 123333
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 231 IMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 231 ~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
.+.+.|+++. ++.|+|+|+++|..+.+...
T Consensus 166 ~l~~~L~~l~---~~~g~tii~vTHd~~~~~~~ 195 (352)
T PRK11144 166 ELLPYLERLA---REINIPILYVSHSLDEILRL 195 (352)
T ss_pred HHHHHHHHHH---HhcCCeEEEEecCHHHHHHh
Confidence 4555555554 56699999999999876543
No 127
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.08 E-value=1.6e-09 Score=88.79 Aligned_cols=130 Identities=17% Similarity=0.183 Sum_probs=77.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC-CH-HHHHHcCCCcc--------ce--eEeCCCCH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-DP-SLAEAMGIDAE--------NL--LIAQPDSA 183 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~-~~-~~~~~~g~~~~--------~l--~~~~~~~~ 183 (264)
-+.+|+++.|.||||+|||||+..++....+..+.+.+-..+... .. .+...+++.++ .. ......+.
T Consensus 21 ~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 21 SIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 478999999999999999999988887665556655443222111 11 22223333221 00 00112222
Q ss_pred H--HHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhh
Q 024705 184 E--NLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLL 261 (264)
Q Consensus 184 e--e~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~ 261 (264)
- ..+...+.++ .+++++++|....-.. ....+.+.+.+.++. ++.|+++|+++|..+.+.
T Consensus 101 G~~qrl~laral~--~~p~llllDEP~~~LD-------------~~~~~~~~~~l~~~~---~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 101 GERQRVLLARALA--QEPPILLLDEPTSHLD-------------IAHQIELLELLRRLA---RERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHHHh--cCCCEEEEeCCccCCC-------------HHHHHHHHHHHHHHH---HhcCCEEEEEeCCHHHHH
Confidence 2 2233344443 5899999998776552 133344556666654 444899999999988765
Q ss_pred hc
Q 024705 262 KH 263 (264)
Q Consensus 262 ~~ 263 (264)
+.
T Consensus 163 ~~ 164 (180)
T cd03214 163 RY 164 (180)
T ss_pred Hh
Confidence 43
No 128
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.08 E-value=1.3e-09 Score=91.52 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=30.7
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+.+|+++.|.||||||||||+..++....+..+.+.|
T Consensus 23 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 60 (214)
T cd03292 23 SISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV 60 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 37799999999999999999998888765555555543
No 129
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.08 E-value=8.7e-10 Score=95.49 Aligned_cols=37 Identities=27% Similarity=0.396 Sum_probs=30.4
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~ 152 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.
T Consensus 34 ~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~ 70 (257)
T PRK11247 34 HIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELL 70 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE
Confidence 4779999999999999999999988876655555553
No 130
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.07 E-value=1e-09 Score=92.06 Aligned_cols=36 Identities=25% Similarity=0.309 Sum_probs=29.4
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEE
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~ 152 (264)
+.+|+++.|.||||||||||+..++....+..+.+.
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 58 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL 58 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 679999999999999999999888876544444443
No 131
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.07 E-value=1.6e-09 Score=90.97 Aligned_cols=38 Identities=29% Similarity=0.308 Sum_probs=31.4
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||||||||+..++....+..+.+.+
T Consensus 22 ~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (213)
T cd03262 22 TVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIII 59 (213)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 47799999999999999999999988766555665544
No 132
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.07 E-value=9.4e-11 Score=99.03 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=30.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYL 154 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~ 154 (264)
-+++|+++.|.||+|||||||+..++.-..+..+.|.+.
T Consensus 25 ~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~ 63 (248)
T COG1116 25 SVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLD 63 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 378999999999999999998777776655555554443
No 133
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.07 E-value=9.3e-10 Score=99.48 Aligned_cols=66 Identities=18% Similarity=0.253 Sum_probs=42.3
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC-CCHHHHHHcCCCccceeEeCCCCH
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA-LDPSLAEAMGIDAENLLIAQPDSA 183 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~-~~~~~~~~~g~~~~~l~~~~~~~~ 183 (264)
+++|+++.|.||||||||||+..++....+..+.+. ++.+.. ......+.+|+.+++..+++..++
T Consensus 25 i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~-i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv 91 (353)
T PRK10851 25 IPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIR-FHGTDVSRLHARDRKVGFVFQHYALFRHMTV 91 (353)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-ECCEECCCCCHHHCCEEEEecCcccCCCCcH
Confidence 679999999999999999999888886655555554 443221 111223446666665444433333
No 134
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.06 E-value=1.3e-09 Score=91.55 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=30.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||||||||+..++....+..+.+.+
T Consensus 24 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~ 61 (214)
T TIGR02673 24 HIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRI 61 (214)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 47899999999999999999998887765555555544
No 135
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.06 E-value=1.5e-09 Score=93.46 Aligned_cols=131 Identities=15% Similarity=0.202 Sum_probs=73.8
Q ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCC-------eEEEEecCCCCC--HHHHHHc-------CCCcc-----
Q 024705 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGG-------YCAYLDVENALD--PSLAEAM-------GIDAE----- 173 (264)
Q Consensus 115 gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~-------~v~~~~~e~~~~--~~~~~~~-------g~~~~----- 173 (264)
|-+.+|+++.|.||||+|||||+..++....+..+ .+.|+..+.... ....+.+ +....
T Consensus 20 ~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 99 (246)
T cd03237 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEI 99 (246)
T ss_pred CCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHH
Confidence 46889999999999999999999988776554433 334443322110 0000000 00000
Q ss_pred --ceeE-------eCCCCHH--HHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHH
Q 024705 174 --NLLI-------AQPDSAE--NLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYS 242 (264)
Q Consensus 174 --~l~~-------~~~~~~e--e~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~ 242 (264)
.+.+ ....+.- +.+.+++.+. .+++++++|...+.+. ......+.+.++++.
T Consensus 100 l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~--~~p~llllDEPt~~LD-------------~~~~~~l~~~l~~~~-- 162 (246)
T cd03237 100 AKPLQIEQILDREVPELSGGELQRVAIAACLS--KDADIYLLDEPSAYLD-------------VEQRLMASKVIRRFA-- 162 (246)
T ss_pred HHHcCCHHHhhCChhhCCHHHHHHHHHHHHHh--cCCCEEEEeCCcccCC-------------HHHHHHHHHHHHHHH--
Confidence 0000 0001111 1122223332 5788999998776652 134444566666665
Q ss_pred HhccCcEEEEEcccchHhhhc
Q 024705 243 LCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 243 l~~~g~tVi~i~h~~~~~~~~ 263 (264)
++.+.+||+++|....+...
T Consensus 163 -~~~~~tiiivsHd~~~~~~~ 182 (246)
T cd03237 163 -ENNEKTAFVVEHDIIMIDYL 182 (246)
T ss_pred -HhcCCEEEEEeCCHHHHHHh
Confidence 56789999999998877653
No 136
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.05 E-value=1.6e-09 Score=92.31 Aligned_cols=38 Identities=24% Similarity=0.340 Sum_probs=30.5
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||||||||+..++....+..+.+.+
T Consensus 31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 68 (233)
T PRK11629 31 SIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIF 68 (233)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 37899999999999999999998888765544555443
No 137
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.05 E-value=1.1e-09 Score=91.45 Aligned_cols=38 Identities=29% Similarity=0.387 Sum_probs=30.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||||||||+..++....+..+.+.+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 59 (205)
T cd03226 22 DLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILL 59 (205)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 37799999999999999999998888765555555543
No 138
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.05 E-value=1.5e-09 Score=92.34 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=31.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||||||||+..++....+..+.+.+
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 59 (232)
T cd03218 22 SVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILL 59 (232)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 37799999999999999999998888766555665544
No 139
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.05 E-value=1.7e-09 Score=92.30 Aligned_cols=38 Identities=21% Similarity=0.278 Sum_probs=30.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+.+|+++.|.||||+|||||+..++....+..|.+.+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 60 (236)
T TIGR03864 23 TVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISV 60 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 47899999999999999999999988766555555544
No 140
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.05 E-value=1.6e-09 Score=92.35 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=31.0
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
+.+|++++|.||||+|||||+..++....+..+.+.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~ 59 (232)
T cd03300 23 IKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILL 59 (232)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 6799999999999999999999988777655565544
No 141
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.05 E-value=1.7e-09 Score=93.64 Aligned_cols=38 Identities=29% Similarity=0.364 Sum_probs=31.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||+|||||+..++....+..|.+.+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~ 61 (258)
T PRK13548 24 TLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRL 61 (258)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 37799999999999999999998888866555555544
No 142
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.05 E-value=1.4e-09 Score=94.77 Aligned_cols=38 Identities=26% Similarity=0.333 Sum_probs=30.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||+|||||+..++....+..|.+.+
T Consensus 46 ~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i 83 (269)
T cd03294 46 DVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLI 83 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence 47799999999999999999999888766555555543
No 143
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.05 E-value=2.1e-09 Score=89.05 Aligned_cols=122 Identities=13% Similarity=0.146 Sum_probs=77.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHh--hcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHH----
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ--KLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSV---- 189 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~--~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~---- 189 (264)
-+++|+++.|.||||+|||||+..++.... +..+.+ +++.+... ..+.+.+++.++...++...++.+.+..
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i-~~~g~~~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~ 106 (192)
T cd03232 29 YVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEI-LINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALL 106 (192)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEE-EECCEehH-HHhhhceEEecccCccccCCcHHHHHHHHHHH
Confidence 478999999999999999999988876432 234444 44433211 2233456776665555444455544432
Q ss_pred -------------HHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEccc
Q 024705 190 -------------VDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQV 256 (264)
Q Consensus 190 -------------i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~ 256 (264)
.+.+ -.+++++++|...+-.. ....+.+.+.++++ ++.|.|||+++|.
T Consensus 107 ~~LSgGe~qrv~la~al--~~~p~vlllDEP~~~LD-------------~~~~~~l~~~l~~~----~~~~~tiiivtH~ 167 (192)
T cd03232 107 RGLSVEQRKRLTIGVEL--AAKPSILFLDEPTSGLD-------------SQAAYNIVRFLKKL----ADSGQAILCTIHQ 167 (192)
T ss_pred hcCCHHHhHHHHHHHHH--hcCCcEEEEeCCCcCCC-------------HHHHHHHHHHHHHH----HHcCCEEEEEEcC
Confidence 1111 24789999998776652 13344455566655 3458999999999
Q ss_pred ch
Q 024705 257 KV 258 (264)
Q Consensus 257 ~~ 258 (264)
.+
T Consensus 168 ~~ 169 (192)
T cd03232 168 PS 169 (192)
T ss_pred Ch
Confidence 76
No 144
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=99.05 E-value=4.8e-10 Score=98.28 Aligned_cols=146 Identities=14% Similarity=0.117 Sum_probs=101.1
Q ss_pred CcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHH----HHHHcCCCccc-ee--
Q 024705 104 GSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPS----LAEAMGIDAEN-LL-- 176 (264)
Q Consensus 104 G~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~----~~~~~g~~~~~-l~-- 176 (264)
-++.|+++|+ |..+|+++++.||.|+|||||+...+..++.+|-..+|-++|...... ..+-.|+...+ +.
T Consensus 259 RFpvLNk~Lk--GhR~GElTvlTGpTGsGKTTFlsEYsLDL~~QGVnTLwgSFEi~n~rla~~mL~Qyagyrl~drl~~y 336 (514)
T KOG2373|consen 259 RFPVLNKYLK--GHRPGELTVLTGPTGSGKTTFLSEYSLDLFTQGVNTLWGSFEIPNKRLAHWMLVQYAGYRLLDRLNSY 336 (514)
T ss_pred hhhHHHHHhc--cCCCCceEEEecCCCCCceeEehHhhHHHHhhhhhheeeeeecchHHHHHHHHHHHccCchHhhhhhh
Confidence 4678999996 999999999999999999999999999999999999999999875541 22334544321 10
Q ss_pred ----------------EeCCCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHH
Q 024705 177 ----------------IAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIH 240 (264)
Q Consensus 177 ----------------~~~~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~ 240 (264)
+......+..++.+...+--+++.-||||.++-++....+.... -..+..+...+++++
T Consensus 337 ~HWadrFErlplyfmtfhgqq~~~~vi~~i~ha~yV~di~HViIDNLQFmmg~~~~~~Dr-----f~~QD~iig~fR~fA 411 (514)
T KOG2373|consen 337 KHWADRFERLPLYFMTFHGQQFMEKVINEIAHAIYVEDIQHVIIDNLQFMMGQGMMALDR-----FHLQDRIIGYFRQFA 411 (514)
T ss_pred hHHHHHHhccchHhhhhcccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHhccchhccch-----hhhHHHHHHHHHHHh
Confidence 11111233344444444333568889999999998643332211 122233556677777
Q ss_pred HHHhccCcEEEEEcccchH
Q 024705 241 YSLCQSHTLIIFLNQVKVL 259 (264)
Q Consensus 241 ~~l~~~g~tVi~i~h~~~~ 259 (264)
.+.||.|-++-|.+++
T Consensus 412 ---T~nn~HvTlVvHPRKe 427 (514)
T KOG2373|consen 412 ---TQNNIHVTLVVHPRKE 427 (514)
T ss_pred ---hccceeEEEEeccccc
Confidence 9999999999998764
No 145
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.04 E-value=2.3e-09 Score=90.44 Aligned_cols=61 Identities=20% Similarity=0.197 Sum_probs=40.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC-HHHHHHcCCCcccee
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD-PSLAEAMGIDAENLL 176 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~-~~~~~~~g~~~~~l~ 176 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.+...+.... ..+.+.+++.+++..
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~ 85 (220)
T cd03263 24 NVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDA 85 (220)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCC
Confidence 3789999999999999999999888887655566555432221111 123344666655443
No 146
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.04 E-value=1.2e-09 Score=98.98 Aligned_cols=71 Identities=23% Similarity=0.329 Sum_probs=49.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC--CH-HH----HHHcCCCccceeEeCCCCHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL--DP-SL----AEAMGIDAENLLIAQPDSAENLL 187 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~--~~-~~----~~~~g~~~~~l~~~~~~~~ee~~ 187 (264)
-+++|+++.|.||||||||||+..++....+..+.+ +++.+... .. .+ .+.+|+.+++..++...++.+.+
T Consensus 15 ~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I-~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~TV~eNi 92 (363)
T TIGR01186 15 AIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI-FIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNT 92 (363)
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEE-EECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCCHHHHH
Confidence 378999999999999999999988888776666665 44443222 11 12 44678888877666655655444
No 147
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.04 E-value=1.8e-09 Score=91.12 Aligned_cols=38 Identities=32% Similarity=0.390 Sum_probs=31.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.|
T Consensus 27 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 64 (221)
T TIGR02211 27 SIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLF 64 (221)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 47899999999999999999999988876555665544
No 148
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.04 E-value=1.3e-09 Score=94.35 Aligned_cols=38 Identities=24% Similarity=0.272 Sum_probs=30.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.|
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 60 (255)
T PRK11248 23 TLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITL 60 (255)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 47899999999999999999999888766555555543
No 149
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.04 E-value=2.1e-09 Score=89.97 Aligned_cols=141 Identities=16% Similarity=0.159 Sum_probs=86.6
Q ss_pred ccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCC-CCCH-----HHHHHcCCCccce
Q 024705 102 STGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN-ALDP-----SLAEAMGIDAENL 175 (264)
Q Consensus 102 ~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~-~~~~-----~~~~~~g~~~~~l 175 (264)
|.|-..|+.+-= -+++|+++.|.||+|+|||||+.++........+ -+++...+ ..-. .+.+.+|+-.+.+
T Consensus 14 p~~~~aL~~Vnl--~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G-~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~ 90 (258)
T COG3638 14 PGGHQALKDVNL--EINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSG-EILFNGVQITKLKGKELRKLRRDIGMIFQQF 90 (258)
T ss_pred CCCceeeeeEeE--EeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcc-eEEecccchhccchHHHHHHHHhceeEeccC
Confidence 345555555432 5889999999999999999999998885544444 44444432 2221 3456688877765
Q ss_pred eEeCCCCHHHHH------------------------------------------------------HHHHHHhhcCCccE
Q 024705 176 LIAQPDSAENLL------------------------------------------------------SVVDTLTKSGSIDV 201 (264)
Q Consensus 176 ~~~~~~~~ee~~------------------------------------------------------~~i~~~~~~~~~~~ 201 (264)
.+++..++-+.+ .+.+.++ .++++
T Consensus 91 nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~--Q~pki 168 (258)
T COG3638 91 NLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALV--QQPKI 168 (258)
T ss_pred CcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHh--cCCCE
Confidence 444332211111 1112221 35677
Q ss_pred EEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 202 IVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 202 vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
+.-|...+.+ +....+.+...|+++. ++.|+|||+.-|..+-.-+.
T Consensus 169 ILADEPvasL-------------Dp~~a~~Vm~~l~~in---~~~g~Tvi~nLH~vdlA~~Y 214 (258)
T COG3638 169 ILADEPVASL-------------DPESAKKVMDILKDIN---QEDGITVIVNLHQVDLAKKY 214 (258)
T ss_pred EecCCccccc-------------ChhhHHHHHHHHHHHH---HHcCCEEEEEechHHHHHHH
Confidence 7777655443 2234455666777776 88999999999987655443
No 150
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.04 E-value=1.3e-09 Score=98.60 Aligned_cols=38 Identities=32% Similarity=0.402 Sum_probs=30.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||||||||+..++....+..+.+.+
T Consensus 19 ~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~ 56 (354)
T TIGR02142 19 TLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVL 56 (354)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 37899999999999999999998888766555555544
No 151
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.04 E-value=2.2e-09 Score=91.09 Aligned_cols=38 Identities=21% Similarity=0.310 Sum_probs=30.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.|
T Consensus 32 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~ 69 (228)
T PRK10584 32 VVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSL 69 (228)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEE
Confidence 36799999999999999999999888766555555543
No 152
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.04 E-value=2.6e-09 Score=85.48 Aligned_cols=120 Identities=19% Similarity=0.233 Sum_probs=75.1
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC---HHHHHHcCCCccceeEeCCCCHHH--HHHHHH
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD---PSLAEAMGIDAENLLIAQPDSAEN--LLSVVD 191 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~---~~~~~~~g~~~~~l~~~~~~~~ee--~~~~i~ 191 (264)
+++|+++.|.|+||+|||||+..++.......+.+ +++...... ..+...+++.++ .+.-+ .+...+
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i-~~~~~~~~~~~~~~~~~~i~~~~q-------lS~G~~~r~~l~~ 93 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEI-LIDGKDIAKLPLEELRRRIGYVPQ-------LSGGQRQRVALAR 93 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEE-EECCEEcccCCHHHHHhceEEEee-------CCHHHHHHHHHHH
Confidence 67999999999999999999998887665444544 555432221 122233444333 33332 233334
Q ss_pred HHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 192 TLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 192 ~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
.+. .+++++++|+...-... .....+.+.+.++. . .+.++++++|..+.+...
T Consensus 94 ~l~--~~~~i~ilDEp~~~lD~-------------~~~~~l~~~l~~~~---~-~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 94 ALL--LNPDLLLLDEPTSGLDP-------------ASRERLLELLRELA---E-EGRTVIIVTHDPELAELA 146 (157)
T ss_pred HHh--cCCCEEEEeCCCcCCCH-------------HHHHHHHHHHHHHH---H-CCCEEEEEeCCHHHHHHh
Confidence 443 46899999987765521 22333455555553 3 379999999998887653
No 153
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.03 E-value=1.8e-09 Score=92.32 Aligned_cols=38 Identities=29% Similarity=0.289 Sum_probs=30.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.+
T Consensus 43 ~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~ 80 (236)
T cd03267 43 TIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRV 80 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 36799999999999999999999988766555554443
No 154
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.03 E-value=1.9e-09 Score=92.02 Aligned_cols=37 Identities=22% Similarity=0.246 Sum_probs=29.8
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
+.+|+++.|.||||+|||||+..++....+..+.+.+
T Consensus 22 i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i 58 (235)
T cd03299 22 VERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILL 58 (235)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 6799999999999999999999887765555554433
No 155
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.03 E-value=1.9e-09 Score=91.36 Aligned_cols=38 Identities=26% Similarity=0.446 Sum_probs=31.3
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.+
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 64 (228)
T cd03257 27 SIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIF 64 (228)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 47899999999999999999998888876555565544
No 156
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.03 E-value=2.5e-09 Score=91.07 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=30.6
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
+++|+++.|.||||+|||||+..++....+..+.+.+
T Consensus 8 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 44 (230)
T TIGR01184 8 IQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVIL 44 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 6799999999999999999999988776555565544
No 157
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.03 E-value=1.9e-09 Score=94.49 Aligned_cols=59 Identities=17% Similarity=0.135 Sum_probs=39.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC-C-HHHHHHcCCCccc
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-D-PSLAEAMGIDAEN 174 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~-~-~~~~~~~g~~~~~ 174 (264)
-+++|+++.|.||||+|||||+..++....+..|.+.+.+.+... . ..+.+.+|+.+++
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~ 89 (279)
T PRK13650 29 HVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQN 89 (279)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcC
Confidence 478999999999999999999998887665555655443322211 1 1334556766654
No 158
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.03 E-value=1.9e-09 Score=90.64 Aligned_cols=130 Identities=15% Similarity=0.214 Sum_probs=78.7
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH----HHHHHcCCCcccee------------EeC
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP----SLAEAMGIDAENLL------------IAQ 179 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~----~~~~~~g~~~~~l~------------~~~ 179 (264)
-+.+|+.+.|.|++||||||++..++.-..+..|. ++++....... .+.+.+.+.+|+.+ +..
T Consensus 29 ~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~-I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~E 107 (252)
T COG1124 29 EIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS-ILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSE 107 (252)
T ss_pred EecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCce-EEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhh
Confidence 37899999999999999999999888766554444 44544322221 12222222222110 000
Q ss_pred C---------------------------------CCHH--HHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCC
Q 024705 180 P---------------------------------DSAE--NLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMY 224 (264)
Q Consensus 180 ~---------------------------------~~~e--e~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~ 224 (264)
+ .+.- +-+.+++.+ .-+|++++.|...+....
T Consensus 108 pl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL--~~~PklLIlDEptSaLD~----------- 174 (252)
T COG1124 108 PLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARAL--IPEPKLLILDEPTSALDV----------- 174 (252)
T ss_pred hhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHh--ccCCCEEEecCchhhhcH-----------
Confidence 0 0111 111222333 247899999987776621
Q ss_pred cHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhcC
Q 024705 225 SDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKHF 264 (264)
Q Consensus 225 ~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~~ 264 (264)
.-+..+.+.|.++. +++|.|.|+|+|..+-++..|
T Consensus 175 --siQa~IlnlL~~l~---~~~~lt~l~IsHdl~~v~~~c 209 (252)
T COG1124 175 --SVQAQILNLLLELK---KERGLTYLFISHDLALVEHMC 209 (252)
T ss_pred --HHHHHHHHHHHHHH---HhcCceEEEEeCcHHHHHHHh
Confidence 33334667777777 889999999999998877654
No 159
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.03 E-value=2.1e-09 Score=87.90 Aligned_cols=124 Identities=15% Similarity=0.237 Sum_probs=79.3
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC--CHHHHHHcCCCccceeEeCCCCHHHH-------
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL--DPSLAEAMGIDAENLLIAQPDSAENL------- 186 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~--~~~~~~~~g~~~~~l~~~~~~~~ee~------- 186 (264)
-+++|+++.|.||||+|||||+..++....+..+.+. ++..... ...+.+.+++.+++..+.. .++.+.
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~i~~~LS~ 101 (178)
T cd03247 24 ELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT-LDGVPVSDLEKALSSLISVLNQRPYLFD-TTLRNNLGRRFSG 101 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEE-ECCEEHHHHHHHHHhhEEEEccCCeeec-ccHHHhhcccCCH
Confidence 4789999999999999999999999887666566654 4432111 1123445677666655443 233322
Q ss_pred -----HHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhh
Q 024705 187 -----LSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLL 261 (264)
Q Consensus 187 -----~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~ 261 (264)
+...+.++ .+++++++|....-... ...+.+.+.++++ ++ +.+||+++|..+.++
T Consensus 102 G~~qrv~laral~--~~p~~lllDEP~~~LD~-------------~~~~~l~~~l~~~----~~-~~tii~~sh~~~~~~ 161 (178)
T cd03247 102 GERQRLALARILL--QDAPIVLLDEPTVGLDP-------------ITERQLLSLIFEV----LK-DKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHHHh--cCCCEEEEECCcccCCH-------------HHHHHHHHHHHHH----cC-CCEEEEEecCHHHHH
Confidence 22233333 58899999987766521 2334444555544 33 799999999988764
No 160
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.03 E-value=2.1e-09 Score=94.26 Aligned_cols=59 Identities=22% Similarity=0.186 Sum_probs=40.4
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC--HHHHHHcCCCccc
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD--PSLAEAMGIDAEN 174 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~--~~~~~~~g~~~~~ 174 (264)
-+.+|+++.|.||||+|||||+..++....+..|.+.+-+.+.... ..+.+.+|+.+++
T Consensus 29 ~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~ 89 (279)
T PRK13635 29 SVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQN 89 (279)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeC
Confidence 4789999999999999999999888877666666665543322211 1234456666554
No 161
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.03 E-value=2.1e-09 Score=93.63 Aligned_cols=38 Identities=29% Similarity=0.397 Sum_probs=31.0
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.+
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 66 (269)
T PRK11831 29 TVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILF 66 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 37899999999999999999999888776555555544
No 162
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.02 E-value=3e-09 Score=88.68 Aligned_cols=37 Identities=30% Similarity=0.387 Sum_probs=30.4
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
+++|+++.|.|+||+|||||+..++....+..+.+.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (201)
T cd03231 23 LAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLL 59 (201)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 7899999999999999999988888766555555543
No 163
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.02 E-value=2.2e-09 Score=90.33 Aligned_cols=36 Identities=25% Similarity=0.396 Sum_probs=29.6
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
+.+ +++.|.||||+|||||+..++....+..+.+.+
T Consensus 21 i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 56 (214)
T cd03297 21 LNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVL 56 (214)
T ss_pred Ecc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 678 999999999999999999888766555666544
No 164
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.02 E-value=2.9e-09 Score=91.63 Aligned_cols=38 Identities=32% Similarity=0.321 Sum_probs=30.7
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.+
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 62 (250)
T PRK11264 25 EVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRV 62 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence 47899999999999999999999888765554555543
No 165
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.02 E-value=3.1e-09 Score=88.82 Aligned_cols=38 Identities=29% Similarity=0.369 Sum_probs=31.5
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.|
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~ 60 (204)
T PRK13538 23 TLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLW 60 (204)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 47899999999999999999999888876666666544
No 166
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.02 E-value=7.7e-10 Score=93.03 Aligned_cols=141 Identities=16% Similarity=0.169 Sum_probs=87.1
Q ss_pred CcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC-HHHHHHcCC--CccceeEeCC
Q 024705 104 GSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD-PSLAEAMGI--DAENLLIAQP 180 (264)
Q Consensus 104 G~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~-~~~~~~~g~--~~~~l~~~~~ 180 (264)
|+..+|..-= .+++|+++.|+||||+||||+...+.....+.++.+.|-..+...- +....+.|+ ..|+..+++.
T Consensus 16 Gl~Al~~Vsl--~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~ 93 (250)
T COG0411 16 GLTAVNDVSL--EVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPG 93 (250)
T ss_pred CEEEEeceeE--EEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCC
Confidence 3444554432 5889999999999999999988777777777777776655444322 233334444 2343333332
Q ss_pred CCHHHH----------------------------------------------------------HHHHHHHhhcCCccEE
Q 024705 181 DSAENL----------------------------------------------------------LSVVDTLTKSGSIDVI 202 (264)
Q Consensus 181 ~~~ee~----------------------------------------------------------~~~i~~~~~~~~~~~v 202 (264)
.++.|. +++.+.+. .+|+++
T Consensus 94 lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa--~~P~lL 171 (250)
T COG0411 94 LTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALA--TQPKLL 171 (250)
T ss_pred CcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHh--cCCCEE
Confidence 222211 11122221 467888
Q ss_pred EEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhcC
Q 024705 203 VVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKHF 264 (264)
Q Consensus 203 vIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~~ 264 (264)
++|...+=+.. .....+...++++. ++.|+||++|-|..+-+-..|
T Consensus 172 LLDEPaAGln~-------------~e~~~l~~~i~~i~---~~~g~tillIEHdM~~Vm~l~ 217 (250)
T COG0411 172 LLDEPAAGLNP-------------EETEELAELIRELR---DRGGVTILLIEHDMKLVMGLA 217 (250)
T ss_pred EecCccCCCCH-------------HHHHHHHHHHHHHH---hcCCcEEEEEEeccHHHhhhc
Confidence 88877665532 34455667777775 668899999999998765543
No 167
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.02 E-value=2.3e-09 Score=91.63 Aligned_cols=36 Identities=31% Similarity=0.424 Sum_probs=30.1
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEE
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~ 152 (264)
+.+|+++.|.||||+|||||+..++.......+.+.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~ 58 (237)
T TIGR00968 23 VPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIR 58 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence 779999999999999999999999876655555553
No 168
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.02 E-value=8.1e-09 Score=84.35 Aligned_cols=124 Identities=13% Similarity=0.174 Sum_probs=71.3
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC---------HHHHHHcCCCccce-eEeCCCCHH-
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD---------PSLAEAMGIDAENL-LIAQPDSAE- 184 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~---------~~~~~~~g~~~~~l-~~~~~~~~e- 184 (264)
-+++|+++.|.||||||||||+..+.. ..+.+.+........ ....+.+|+..... ......+..
T Consensus 17 ~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq 92 (176)
T cd03238 17 SIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGE 92 (176)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHH
Confidence 378999999999999999999987642 223333221110000 12344455432110 011122222
Q ss_pred -HHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHh
Q 024705 185 -NLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLL 260 (264)
Q Consensus 185 -e~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~ 260 (264)
..+...+.+....+++++++|+...-... ...+.+.+.++++ ++.|.+||+++|..+.+
T Consensus 93 ~qrl~laral~~~~~p~llLlDEPt~~LD~-------------~~~~~l~~~l~~~----~~~g~tvIivSH~~~~~ 152 (176)
T cd03238 93 LQRVKLASELFSEPPGTLFILDEPSTGLHQ-------------QDINQLLEVIKGL----IDLGNTVILIEHNLDVL 152 (176)
T ss_pred HHHHHHHHHHhhCCCCCEEEEeCCcccCCH-------------HHHHHHHHHHHHH----HhCCCEEEEEeCCHHHH
Confidence 33444555554334999999988766531 3334455555555 34699999999998765
No 169
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.02 E-value=3.1e-09 Score=91.08 Aligned_cols=67 Identities=22% Similarity=0.299 Sum_probs=42.4
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC--CH-HHHHHcCCCccceeEeCCCCH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL--DP-SLAEAMGIDAENLLIAQPDSA 183 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~--~~-~~~~~~g~~~~~l~~~~~~~~ 183 (264)
-+++|+++.|.||||+|||||+..++....+.++.+. ++..... .. .....+++.+++..++...++
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~-~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 92 (242)
T cd03295 23 EIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF-IDGEDIREQDPVELRRKIGYVIQQIGLFPHMTV 92 (242)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE-ECCeEcCcCChHHhhcceEEEccCccccCCCcH
Confidence 4789999999999999999999988876655555554 4332211 11 223345665555444433333
No 170
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.01 E-value=2.9e-10 Score=90.84 Aligned_cols=126 Identities=18% Similarity=0.207 Sum_probs=82.1
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC-C-----HHHHHHcCCCccceeEeCCCCHHHHHHH-
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-D-----PSLAEAMGIDAENLLIAQPDSAENLLSV- 189 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~-~-----~~~~~~~g~~~~~l~~~~~~~~ee~~~~- 189 (264)
+.+|+.+.|+||+|||||||+..++..-...++.|.++...-.. + ..|.+.+|+..|.+.+.+..+..|.+..
T Consensus 33 v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lP 112 (228)
T COG4181 33 VKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALP 112 (228)
T ss_pred ecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccch
Confidence 67999999999999999998877776555666777666543221 1 1467778999988877766554433211
Q ss_pred --------------HHHHh-----------------------------hcCCccEEEEcCccccccccccCCCcCCCCcH
Q 024705 190 --------------VDTLT-----------------------------KSGSIDVIVVDSVAALIPKCEIGVPINGMYSD 226 (264)
Q Consensus 190 --------------i~~~~-----------------------------~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~ 226 (264)
.+.++ -...|++++-|..+.-. +.
T Consensus 113 leL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNL-------------D~ 179 (228)
T COG4181 113 LELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNL-------------DR 179 (228)
T ss_pred hhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCc-------------ch
Confidence 11111 01345566666544333 22
Q ss_pred HHHHHHHHHHHHHHHHHhccCcEEEEEcccch
Q 024705 227 AQSRIMTQALRKIHYSLCQSHTLIIFLNQVKV 258 (264)
Q Consensus 227 ~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~ 258 (264)
.-.+.++..|..+. ++.|+|+|+++|+..
T Consensus 180 ~Tg~~iaDLlF~ln---re~G~TlVlVTHD~~ 208 (228)
T COG4181 180 ATGDKIADLLFALN---RERGTTLVLVTHDPQ 208 (228)
T ss_pred hHHHHHHHHHHHHh---hhcCceEEEEeCCHH
Confidence 33344677888887 899999999999854
No 171
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.01 E-value=1.8e-09 Score=98.96 Aligned_cols=72 Identities=15% Similarity=0.176 Sum_probs=46.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC-CCH-H----HHHHcCCCccceeEeCCCCHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA-LDP-S----LAEAMGIDAENLLIAQPDSAENLL 187 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~-~~~-~----~~~~~g~~~~~l~~~~~~~~ee~~ 187 (264)
-+++|+++.|.||||||||||+..++....+..+.+.+-..+.. ... . +.+.+|+.+++..++...++.+.+
T Consensus 50 ~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl 127 (400)
T PRK10070 50 AIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNT 127 (400)
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHH
Confidence 37899999999999999999998888776666666544332221 111 1 123577777765555444544443
No 172
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.00 E-value=3.3e-09 Score=91.53 Aligned_cols=38 Identities=24% Similarity=0.275 Sum_probs=31.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+.+|+++.|.||||+|||||+..++....+..|.+.+
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 64 (255)
T PRK11300 27 EVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILL 64 (255)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEE
Confidence 36799999999999999999999888876555565544
No 173
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.00 E-value=3.1e-09 Score=91.67 Aligned_cols=38 Identities=21% Similarity=0.257 Sum_probs=31.0
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (252)
T TIGR03005 22 SVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQV 59 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 37899999999999999999999888766555555543
No 174
>PRK10908 cell division protein FtsE; Provisional
Probab=99.00 E-value=3.5e-09 Score=89.53 Aligned_cols=38 Identities=18% Similarity=0.269 Sum_probs=30.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+.+|+++.|.||||+|||||+..++....+..+.+.+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 61 (222)
T PRK10908 24 HMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWF 61 (222)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 47899999999999999999999988765545555443
No 175
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.00 E-value=7.6e-10 Score=89.25 Aligned_cols=46 Identities=26% Similarity=0.339 Sum_probs=34.0
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD 161 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~ 161 (264)
-++.|+++.|.||+|+|||||+..++.-..+..+.+.+-+.+....
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~ 66 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTAS 66 (231)
T ss_pred eecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcC
Confidence 3789999999999999999977666665556666555555554433
No 176
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.00 E-value=2.4e-09 Score=91.75 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=30.9
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
+.+|+++.|.||||||||||+..++....+..+.+.+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 62 (241)
T PRK14250 26 FEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILI 62 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 6799999999999999999999888866555565554
No 177
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.00 E-value=4.4e-09 Score=90.01 Aligned_cols=38 Identities=29% Similarity=0.356 Sum_probs=30.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+.+|+++.|.||||+|||||+..++....+..|.+.+
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 60 (240)
T PRK09493 23 NIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV 60 (240)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 47899999999999999999999888866555555443
No 178
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=98.99 E-value=2e-09 Score=87.29 Aligned_cols=120 Identities=19% Similarity=0.352 Sum_probs=71.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCC----CccceeEeCCCCHHHHHHHHHHHhhcC
Q 024705 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGI----DAENLLIAQPDSAENLLSVVDTLTKSG 197 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~----~~~~l~~~~~~~~ee~~~~i~~~~~~~ 197 (264)
+++|+|++|||||+|+.+++.. .+++++|+......+.+..+++.- .+...... ....++.+.+... .
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~--E~~~~l~~~l~~~---~ 72 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---LGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTI--ETPRDLVSALKEL---D 72 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEe--ecHHHHHHHHHhc---C
Confidence 4789999999999999999865 678999999988877654443221 12222111 1123333333222 2
Q ss_pred CccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcc
Q 024705 198 SIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQ 255 (264)
Q Consensus 198 ~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h 255 (264)
+.++|+||+++.+....-..+ ... ... .+...+.++...+++.++++|+++.
T Consensus 73 ~~~~VLIDclt~~~~n~l~~~-~~~--~~~---~~~~~i~~l~~~l~~~~~~~viVsn 124 (169)
T cd00544 73 PGDVVLIDCLTLWVTNLLFAD-LEE--WEA---AIADEIDALLAAVRNKPGTLILVSN 124 (169)
T ss_pred CCCEEEEEcHhHHHHHhCCCc-ccc--chh---HHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 577999999999985322211 100 001 1223455555555777877777764
No 179
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.99 E-value=2.6e-09 Score=99.08 Aligned_cols=139 Identities=18% Similarity=0.223 Sum_probs=86.0
Q ss_pred CcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC--CCHHHHHHcCCC--ccceeEeC
Q 024705 104 GSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA--LDPSLAEAMGID--AENLLIAQ 179 (264)
Q Consensus 104 G~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~--~~~~~~~~~g~~--~~~l~~~~ 179 (264)
|+..||..-= -+.+|+++.+.|.||+|||||+..++....+.++. ++++.+.. ..+.-++..|+. .|++.+.+
T Consensus 20 gV~AL~~v~l--~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~-I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p 96 (500)
T COG1129 20 GVKALDGVSL--TVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGE-ILIDGKPVAFSSPRDALAAGIATVHQELSLVP 96 (500)
T ss_pred Cceeecccee--EEeCceEEEEecCCCCCHHHHHHHHhCcccCCCce-EEECCEEccCCCHHHHHhCCcEEEeechhccC
Confidence 4555665532 47899999999999999999998888877765554 44544332 122334444432 12111111
Q ss_pred CCC--------------------------------------------------HHHHHHHHHHHhhcCCccEEEEcCccc
Q 024705 180 PDS--------------------------------------------------AENLLSVVDTLTKSGSIDVIVVDSVAA 209 (264)
Q Consensus 180 ~~~--------------------------------------------------~ee~~~~i~~~~~~~~~~~vvIDsl~~ 209 (264)
..+ ..+++++.+.+. .+++++++|..++
T Consensus 97 ~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~--~~arllIlDEPTa 174 (500)
T COG1129 97 NLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALS--FDARVLILDEPTA 174 (500)
T ss_pred CccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHh--cCCCEEEEcCCcc
Confidence 100 113334444442 4788999998888
Q ss_pred cccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhcC
Q 024705 210 LIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKHF 264 (264)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~~ 264 (264)
.++. .+.+.+...+++| ++.|++||+|||-.+++-+.|
T Consensus 175 aLt~-------------~E~~~Lf~~ir~L----k~~Gv~ii~ISHrl~Ei~~i~ 212 (500)
T COG1129 175 ALTV-------------KETERLFDLIRRL----KAQGVAIIYISHRLDEVFEIA 212 (500)
T ss_pred cCCH-------------HHHHHHHHHHHHH----HhCCCEEEEEcCcHHHHHHhc
Confidence 7742 3344445555555 789999999999988876654
No 180
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.99 E-value=4.3e-09 Score=88.62 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=30.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+.+|+++.|.|+||+|||||+..++.......|.+.|
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 70 (214)
T PRK13543 33 HVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQI 70 (214)
T ss_pred EECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEE
Confidence 47899999999999999999999888766554554433
No 181
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.99 E-value=4.5e-09 Score=92.00 Aligned_cols=59 Identities=17% Similarity=0.197 Sum_probs=39.4
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC-C-HHHHHHcCCCccc
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-D-PSLAEAMGIDAEN 174 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~-~-~~~~~~~g~~~~~ 174 (264)
-+++|+++.|.|+||+|||||+..++....+..|.+.+-..+... . ..+...+|+.+++
T Consensus 26 ~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 86 (277)
T PRK13652 26 IAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQN 86 (277)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecC
Confidence 378999999999999999999999887665555655443222111 1 1334456665554
No 182
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=3.4e-09 Score=92.62 Aligned_cols=59 Identities=20% Similarity=0.313 Sum_probs=39.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC-C-HHHHHHcCCCccc
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-D-PSLAEAMGIDAEN 174 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~-~-~~~~~~~g~~~~~ 174 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.+.+.+... . ..+...+|+.+++
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 87 (274)
T PRK13647 27 SIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQD 87 (274)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecC
Confidence 478999999999999999999988887665555555443322111 1 1334456766554
No 183
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.98 E-value=3.2e-09 Score=92.41 Aligned_cols=39 Identities=28% Similarity=0.318 Sum_probs=32.0
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYL 154 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~ 154 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.|.
T Consensus 35 ~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~ 73 (267)
T PRK15112 35 TLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLID 73 (267)
T ss_pred EecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEEC
Confidence 478999999999999999999988887766556665543
No 184
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=3.5e-09 Score=92.04 Aligned_cols=38 Identities=24% Similarity=0.386 Sum_probs=30.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+.+|+++.|.||||+|||||+..++....+..+.+.|
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 70 (265)
T PRK10575 33 TFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL 70 (265)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE
Confidence 47799999999999999999999888765555555543
No 185
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=2.5e-09 Score=94.22 Aligned_cols=59 Identities=27% Similarity=0.321 Sum_probs=40.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC---C---HHHHHHcCCCccc
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL---D---PSLAEAMGIDAEN 174 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~---~---~~~~~~~g~~~~~ 174 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.|...+... . ..+.+.+|+.+++
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~ 93 (290)
T PRK13634 29 SIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQF 93 (290)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeC
Confidence 578999999999999999999999887765555555443322110 1 1234456766664
No 186
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=4.4e-09 Score=89.82 Aligned_cols=39 Identities=26% Similarity=0.407 Sum_probs=31.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYL 154 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~ 154 (264)
-+.+|+++.|.||||+|||||+..++....+.++.+.+.
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~ 65 (237)
T PRK11614 27 HINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFD 65 (237)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEEC
Confidence 478999999999999999999998887665556665543
No 187
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=3.5e-09 Score=93.20 Aligned_cols=60 Identities=20% Similarity=0.257 Sum_probs=40.4
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC---C-HHHHHHcCCCccce
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL---D-PSLAEAMGIDAENL 175 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~---~-~~~~~~~g~~~~~l 175 (264)
-+.+|+++.|.||||+|||||+..++....+..|.+.+-+.+... . ..+...+|+.+++.
T Consensus 29 ~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~ 92 (287)
T PRK13637 29 EIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYP 92 (287)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCc
Confidence 478999999999999999999998887665555555443222211 1 13345677766653
No 188
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.98 E-value=6.1e-09 Score=88.34 Aligned_cols=38 Identities=26% Similarity=0.286 Sum_probs=30.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.+
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 66 (225)
T PRK10247 29 SLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLF 66 (225)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEE
Confidence 47899999999999999999999888765555555543
No 189
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.98 E-value=4.4e-09 Score=91.42 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=30.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+.+|+++.|.||||+|||||+..++.......+.+.|
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 66 (265)
T PRK10253 29 EIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWL 66 (265)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEE
Confidence 47799999999999999999998888766555555543
No 190
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.98 E-value=4.1e-10 Score=103.22 Aligned_cols=62 Identities=15% Similarity=0.187 Sum_probs=43.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC-C-HHHHHHcCCCccceeE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-D-PSLAEAMGIDAENLLI 177 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~-~-~~~~~~~g~~~~~l~~ 177 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.+...+... . ..+++.+|+.+++..+
T Consensus 25 ~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l 88 (402)
T PRK09536 25 SVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSL 88 (402)
T ss_pred EECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCC
Confidence 478999999999999999999998887666666666554433221 1 2445567776665443
No 191
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.98 E-value=6.6e-09 Score=86.52 Aligned_cols=58 Identities=19% Similarity=0.265 Sum_probs=38.3
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC-C-HHHHHHcCCCccce
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-D-PSLAEAMGIDAENL 175 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~-~-~~~~~~~g~~~~~l 175 (264)
+.+|++++|.||||+|||||+..++....+..+. ++++.+... . ..+.+.+++.+++.
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~-v~~~g~~~~~~~~~~~~~i~~~~q~~ 83 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGE-ILFERQSIKKDLCTYQKQLCFVGHRS 83 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCee-EEECCCccccCHHHHHhheEEecccc
Confidence 6799999999999999999998887765454554 455543221 1 12334456555443
No 192
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=98.98 E-value=6.9e-11 Score=96.52 Aligned_cols=149 Identities=15% Similarity=0.096 Sum_probs=87.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH--HHHH-HcCCCccceeEeCCCCHHHHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAE-AMGIDAENLLIAQPDSAENLLSVVDT 192 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~--~~~~-~~g~~~~~l~~~~~~~~ee~~~~i~~ 192 (264)
.+.+|+++.+.||||+||||.-..+..-..+..+++.+-+.+.+.-+ .|++ .+|+.+|...++...++++.+..+-+
T Consensus 26 ~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE 105 (243)
T COG1137 26 EVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLE 105 (243)
T ss_pred EEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHh
Confidence 47899999999999999999665555555555666665555555444 3333 35788998888888887776655433
Q ss_pred HhhcC-C--ccEEEEcCccccccccccCCCcCCCCcHHHHHH--------------------------HHHHHHHHHHHH
Q 024705 193 LTKSG-S--IDVIVVDSVAALIPKCEIGVPINGMYSDAQSRI--------------------------MTQALRKIHYSL 243 (264)
Q Consensus 193 ~~~~~-~--~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~--------------------------i~~~L~~l~~~l 243 (264)
..... . .+-.-+|.+..-+.-..+...++..++|.+.|. ....++++...+
T Consensus 106 ~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L 185 (243)
T COG1137 106 IREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHL 185 (243)
T ss_pred hhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHH
Confidence 32110 0 000001222221111222233333333333321 122566777777
Q ss_pred hccCcEEEEEcccchHhhhcC
Q 024705 244 CQSHTLIIFLNQVKVLLLKHF 264 (264)
Q Consensus 244 ~~~g~tVi~i~h~~~~~~~~~ 264 (264)
++.|+-|+++.|..++.-+.|
T Consensus 186 ~~rgiGvLITDHNVREtL~i~ 206 (243)
T COG1137 186 KDRGIGVLITDHNVRETLDIC 206 (243)
T ss_pred HhCCceEEEccccHHHHHhhh
Confidence 899999999999988765543
No 193
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.97 E-value=5.1e-09 Score=89.66 Aligned_cols=37 Identities=27% Similarity=0.361 Sum_probs=30.9
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
+++|+++.|.||||+|||||+..++....+..+.+.+
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 62 (241)
T PRK10895 26 VNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIII 62 (241)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 6799999999999999999999888876555565544
No 194
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.97 E-value=6.5e-10 Score=93.89 Aligned_cols=68 Identities=24% Similarity=0.304 Sum_probs=43.0
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC-CH-H-HHHHcCCCccceeEeCCCCH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-DP-S-LAEAMGIDAENLLIAQPDSA 183 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~-~~-~-~~~~~g~~~~~l~~~~~~~~ 183 (264)
-+.+|+++.|.||||||||||+..++....+..+.+.+...+... .. . ..+.+++.+++..++...++
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (222)
T cd03224 22 TVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPELTV 92 (222)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCCcH
Confidence 478999999999999999999988877665556665543322211 11 1 23346766665444433333
No 195
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.97 E-value=4.7e-09 Score=88.17 Aligned_cols=38 Identities=21% Similarity=0.327 Sum_probs=30.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.|
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~ 58 (213)
T cd03235 21 EVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE
Confidence 47899999999999999999999888765555555443
No 196
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.97 E-value=2e-09 Score=98.01 Aligned_cols=69 Identities=16% Similarity=0.164 Sum_probs=45.5
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCC---C---CCH-H----HHHHcCCCccceeEeCCCCHHH
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN---A---LDP-S----LAEAMGIDAENLLIAQPDSAEN 185 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~---~---~~~-~----~~~~~g~~~~~l~~~~~~~~ee 185 (264)
+++|+++.|.|+||||||||+..++....+..+.+ +++.+. . ... . +.+.+++.+++..+++..++.+
T Consensus 47 i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I-~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~e 125 (382)
T TIGR03415 47 IEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSV-LVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEE 125 (382)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE-EECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHH
Confidence 67999999999999999999999888766666665 455421 1 111 1 1235777777665555444443
Q ss_pred H
Q 024705 186 L 186 (264)
Q Consensus 186 ~ 186 (264)
.
T Consensus 126 N 126 (382)
T TIGR03415 126 N 126 (382)
T ss_pred H
Confidence 3
No 197
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.97 E-value=6.4e-09 Score=88.04 Aligned_cols=38 Identities=21% Similarity=0.233 Sum_probs=31.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+.+|+++.|.||||+|||||+..++....+..+.+.|
T Consensus 30 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 67 (224)
T TIGR02324 30 TVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILV 67 (224)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEE
Confidence 36799999999999999999999888766555666544
No 198
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.97 E-value=7e-09 Score=89.97 Aligned_cols=30 Identities=30% Similarity=0.459 Sum_probs=26.6
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhh
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQK 146 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~ 146 (264)
+.+|+++.|.||||+|||||+..++....+
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p 56 (262)
T PRK09984 27 IHHGEMVALLGPSGSGKSTLLRHLSGLITG 56 (262)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 679999999999999999999988876544
No 199
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.97 E-value=4.5e-09 Score=92.32 Aligned_cols=60 Identities=20% Similarity=0.267 Sum_probs=40.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC---C-HHHHHHcCCCccce
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL---D-PSLAEAMGIDAENL 175 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~---~-~~~~~~~g~~~~~l 175 (264)
-+++|+++.|.||||+|||||+..++....+..|.+.+...+... . ..+...+|+.+++.
T Consensus 28 ~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~ 91 (283)
T PRK13636 28 NIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDP 91 (283)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCc
Confidence 378999999999999999999999888765555655543322211 1 12345577666653
No 200
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.97 E-value=5.1e-09 Score=90.59 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=31.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEec
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~ 156 (264)
-+++|+++.|.|+||+|||||+..++....+..+.+ +++.
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i-~~~g 66 (257)
T PRK10619 27 QANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSI-VVNG 66 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EECC
Confidence 478999999999999999999998887665555554 4443
No 201
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.96 E-value=3.9e-09 Score=88.13 Aligned_cols=128 Identities=14% Similarity=0.120 Sum_probs=73.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHh---hcCCeEEEEecCCCCC--HHHHHHcCCCccceeEeCCCCHHHHHHH-
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ---KLGGYCAYLDVENALD--PSLAEAMGIDAENLLIAQPDSAENLLSV- 189 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~---~~g~~v~~~~~e~~~~--~~~~~~~g~~~~~l~~~~~~~~ee~~~~- 189 (264)
-+++|+++.|.||||+|||||+..++.... +..+.+ +++...... ....+.+++.+++..++...++.+.+..
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i-~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~ 107 (202)
T cd03233 29 VVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDI-HYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFA 107 (202)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEE-EECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhh
Confidence 478999999999999999999888887665 344544 443322111 1233345665554433333344333221
Q ss_pred ----------------------HHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccC
Q 024705 190 ----------------------VDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSH 247 (264)
Q Consensus 190 ----------------------i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g 247 (264)
.+.++ .+++++++|....-.. ....+.+.+.++++. ++.+
T Consensus 108 ~~~~~~~~~~~LS~Ge~qrl~laral~--~~p~llllDEPt~~LD-------------~~~~~~~~~~l~~~~---~~~~ 169 (202)
T cd03233 108 LRCKGNEFVRGISGGERKRVSIAEALV--SRASVLCWDNSTRGLD-------------SSTALEILKCIRTMA---DVLK 169 (202)
T ss_pred hhhccccchhhCCHHHHHHHHHHHHHh--hCCCEEEEcCCCccCC-------------HHHHHHHHHHHHHHH---HhCC
Confidence 12221 4678999997665542 134444566666664 5556
Q ss_pred cEEE-EEcccchHhhh
Q 024705 248 TLII-FLNQVKVLLLK 262 (264)
Q Consensus 248 ~tVi-~i~h~~~~~~~ 262 (264)
.++| +++|..+.+..
T Consensus 170 ~t~ii~~~h~~~~~~~ 185 (202)
T cd03233 170 TTTFVSLYQASDEIYD 185 (202)
T ss_pred CEEEEEEcCCHHHHHH
Confidence 6655 55666555543
No 202
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.96 E-value=7.1e-10 Score=94.59 Aligned_cols=71 Identities=15% Similarity=0.111 Sum_probs=44.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC-CH-HH-HHHcCCCccceeEeCCCCHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-DP-SL-AEAMGIDAENLLIAQPDSAENL 186 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~-~~-~~-~~~~g~~~~~l~~~~~~~~ee~ 186 (264)
-+++|+++.|.||||||||||+..++....+..|.+.+...+... .. .+ ...+++.+++..++...++.+.
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~ 95 (236)
T cd03219 22 SVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLEN 95 (236)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHH
Confidence 377999999999999999999988887665555555443222111 11 12 2346666666544444444443
No 203
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.96 E-value=4.9e-09 Score=89.20 Aligned_cols=37 Identities=22% Similarity=0.386 Sum_probs=30.3
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhh----cCCeEEE
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQK----LGGYCAY 153 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~----~g~~v~~ 153 (264)
+++|+++.|.||||+|||||+..++....+ ..+.+.+
T Consensus 9 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~ 49 (230)
T TIGR02770 9 LKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILL 49 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEE
Confidence 679999999999999999999988887654 4555543
No 204
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.96 E-value=3.9e-09 Score=88.13 Aligned_cols=38 Identities=26% Similarity=0.271 Sum_probs=31.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.|
T Consensus 20 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 57 (206)
T TIGR03608 20 TIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYL 57 (206)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence 36799999999999999999999988866555565544
No 205
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.95 E-value=5.5e-09 Score=86.24 Aligned_cols=38 Identities=24% Similarity=0.417 Sum_probs=30.4
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||||||||+..++....+..+.+.+
T Consensus 14 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 51 (190)
T TIGR01166 14 AAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLI 51 (190)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEE
Confidence 47899999999999999999988887765544555544
No 206
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.95 E-value=4.8e-09 Score=92.28 Aligned_cols=59 Identities=20% Similarity=0.279 Sum_probs=40.5
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC---C---HHHHHHcCCCccc
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL---D---PSLAEAMGIDAEN 174 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~---~---~~~~~~~g~~~~~ 174 (264)
-+++|+++.|.||||||||||+..++....+..|.+.+-+.+... . ..+.+.+|+.+++
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~ 93 (286)
T PRK13646 29 EFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQF 93 (286)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecC
Confidence 578999999999999999999999887666556655443222211 1 1234557776665
No 207
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.95 E-value=6.1e-09 Score=90.54 Aligned_cols=38 Identities=26% Similarity=0.476 Sum_probs=30.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.|
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 70 (265)
T TIGR02769 33 SIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSF 70 (265)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 37899999999999999999988888766555555544
No 208
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.95 E-value=6.8e-09 Score=90.47 Aligned_cols=58 Identities=28% Similarity=0.434 Sum_probs=38.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC--C-HHHHHHcCCCccc
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL--D-PSLAEAMGIDAEN 174 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~--~-~~~~~~~g~~~~~ 174 (264)
-+++|+++.|.||||+|||||+..++....+..|.+ +++..... . ..+.+.+++.+++
T Consensus 31 ~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i-~~~g~~~~~~~~~~~~~~i~~v~q~ 91 (269)
T PRK13648 31 NIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI-FYNNQAITDDNFEKLRKHIGIVFQN 91 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE-EECCEECCcCCHHHHHhheeEEEeC
Confidence 478999999999999999999988887665555554 44433211 1 1233446655554
No 209
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.95 E-value=2.7e-09 Score=89.37 Aligned_cols=38 Identities=26% Similarity=0.278 Sum_probs=30.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||+|||||+..++.......|.+.|
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 61 (207)
T PRK13539 24 TLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKL 61 (207)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 47799999999999999999988888765555565544
No 210
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.95 E-value=9.5e-09 Score=86.19 Aligned_cols=62 Identities=18% Similarity=0.179 Sum_probs=39.7
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC-HHHHHHcCCCccceeEe
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD-PSLAEAMGIDAENLLIA 178 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~-~~~~~~~g~~~~~l~~~ 178 (264)
-+++| ++.|.||||+|||||+..++....+..+.+.+...+.... ....+.+++.+++..++
T Consensus 22 ~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~ 84 (211)
T cd03264 22 TLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVY 84 (211)
T ss_pred EEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCccc
Confidence 36688 9999999999999999888876655566655433221111 22344566655554433
No 211
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.94 E-value=7e-09 Score=91.02 Aligned_cols=58 Identities=21% Similarity=0.236 Sum_probs=38.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcC---CeEEEEecCCCCC---HHHHHHcCCCccc
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLG---GYCAYLDVENALD---PSLAEAMGIDAEN 174 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g---~~v~~~~~e~~~~---~~~~~~~g~~~~~ 174 (264)
-+++|+++.|.||||+|||||+..++....+.. +.+ +++.+.... ..+...+|+.+++
T Consensus 29 ~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i-~i~g~~~~~~~~~~~~~~ig~v~q~ 92 (282)
T PRK13640 29 SIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKI-TVDGITLTAKTVWDIREKVGIVFQN 92 (282)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEE-EECCEECCcCCHHHHHhheEEEEEC
Confidence 478999999999999999999999887765543 444 444432211 1233456665554
No 212
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.94 E-value=8.6e-09 Score=88.31 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=30.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 61 (242)
T PRK11124 24 DCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNI 61 (242)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 36799999999999999999999888765555555543
No 213
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.94 E-value=5.6e-09 Score=93.54 Aligned_cols=39 Identities=28% Similarity=0.436 Sum_probs=31.6
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEe
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~ 155 (264)
+.+|+++.|.|+||||||||+..++.......+.+.|.+
T Consensus 38 i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g 76 (327)
T PRK11308 38 LERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQG 76 (327)
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECC
Confidence 679999999999999999999998876555556555533
No 214
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.93 E-value=8.1e-09 Score=89.28 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=30.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 60 (256)
T TIGR03873 23 TAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDL 60 (256)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEE
Confidence 36799999999999999999999888766555555544
No 215
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.93 E-value=8.4e-09 Score=91.52 Aligned_cols=38 Identities=26% Similarity=0.369 Sum_probs=31.4
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+.+|+++.|.||||||||||+..++....+..+.+.+
T Consensus 29 ~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~ 66 (305)
T PRK13651 29 EINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEW 66 (305)
T ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE
Confidence 47899999999999999999999888876555555544
No 216
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.93 E-value=9.8e-09 Score=88.42 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=29.5
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEec
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~ 156 (264)
+++|+++.|.||||||||||+..++... +..+.+ +++.
T Consensus 19 i~~Gei~~l~G~nGsGKSTLl~~l~Gl~-~~~G~i-~~~g 56 (248)
T PRK03695 19 VRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSI-QFAG 56 (248)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCeEE-EECC
Confidence 7799999999999999999998887754 344444 4443
No 217
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.93 E-value=8.4e-09 Score=87.27 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=29.5
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEE
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~ 152 (264)
+.+|++++|.||||+|||||+..++....+..+.+.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 58 (223)
T TIGR03740 23 VPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEII 58 (223)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 679999999999999999999988876555445443
No 218
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.92 E-value=6e-09 Score=98.82 Aligned_cols=130 Identities=15% Similarity=0.165 Sum_probs=74.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC-CH-H-HHHHcCCCccceeEeCCCCHHHHHH----
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-DP-S-LAEAMGIDAENLLIAQPDSAENLLS---- 188 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~-~~-~-~~~~~g~~~~~l~~~~~~~~ee~~~---- 188 (264)
-+++|+++.|.||||||||||+..++....+..|.+.+-..+... .. . +...+|+.+++..++...++.+.+.
T Consensus 33 ~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~ 112 (510)
T PRK15439 33 TLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP 112 (510)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc
Confidence 478999999999999999999988887655555555432222111 11 1 1223555555433333223322211
Q ss_pred --------------------------------------HHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHH
Q 024705 189 --------------------------------------VVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSR 230 (264)
Q Consensus 189 --------------------------------------~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r 230 (264)
+.+.+ ..+|+++++|...+-. +....+
T Consensus 113 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL--~~~p~lllLDEPt~~L-------------D~~~~~ 177 (510)
T PRK15439 113 KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGL--MRDSRILILDEPTASL-------------TPAETE 177 (510)
T ss_pred cchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHH--HcCCCEEEEECCCCCC-------------CHHHHH
Confidence 11111 1356677777655544 223344
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcccchHhhhcC
Q 024705 231 IMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKHF 264 (264)
Q Consensus 231 ~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~~ 264 (264)
.+.+.|+++ ++.|.+||+++|..+.+...|
T Consensus 178 ~l~~~l~~~----~~~g~tiiivtHd~~~~~~~~ 207 (510)
T PRK15439 178 RLFSRIREL----LAQGVGIVFISHKLPEIRQLA 207 (510)
T ss_pred HHHHHHHHH----HHCCCEEEEEeCCHHHHHHhC
Confidence 455556655 345899999999988876543
No 219
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.92 E-value=6.4e-10 Score=92.71 Aligned_cols=128 Identities=15% Similarity=0.195 Sum_probs=78.7
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHH--hhcCCeEEEEecCCCC-CH-HH-HHHcCCCccceeEeCCCCHHHHHH--
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEA--QKLGGYCAYLDVENAL-DP-SL-AEAMGIDAENLLIAQPDSAENLLS-- 188 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~--~~~g~~v~~~~~e~~~-~~-~~-~~~~g~~~~~l~~~~~~~~ee~~~-- 188 (264)
-+.+|+++.|.|+||+|||||+..++... .+..+.+.+...+... .. .+ ...+++.+++.......+.+++..
T Consensus 22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~ 101 (200)
T cd03217 22 TIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYV 101 (200)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhc
Confidence 46799999999999999999998887763 3445555443322111 11 22 223666666544443334443332
Q ss_pred -------------HHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcc
Q 024705 189 -------------VVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQ 255 (264)
Q Consensus 189 -------------~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h 255 (264)
..+.++ .+++++++|....-.. ....+.+.+.|+++ ++.+.|||+++|
T Consensus 102 ~~~LS~G~~qrv~laral~--~~p~illlDEPt~~LD-------------~~~~~~l~~~L~~~----~~~~~tiii~sh 162 (200)
T cd03217 102 NEGFSGGEKKRNEILQLLL--LEPDLAILDEPDSGLD-------------IDALRLVAEVINKL----REEGKSVLIITH 162 (200)
T ss_pred cccCCHHHHHHHHHHHHHh--cCCCEEEEeCCCccCC-------------HHHHHHHHHHHHHH----HHCCCEEEEEec
Confidence 122222 5789999998776552 13334455566655 345899999999
Q ss_pred cchHhhh
Q 024705 256 VKVLLLK 262 (264)
Q Consensus 256 ~~~~~~~ 262 (264)
..+.++.
T Consensus 163 ~~~~~~~ 169 (200)
T cd03217 163 YQRLLDY 169 (200)
T ss_pred CHHHHHH
Confidence 9887654
No 220
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.92 E-value=9.3e-09 Score=89.70 Aligned_cols=38 Identities=16% Similarity=0.276 Sum_probs=31.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||+|||||+..++....+..|.+.+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 60 (271)
T PRK13638 23 DFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLW 60 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEE
Confidence 47799999999999999999999888766555665544
No 221
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.92 E-value=8.9e-09 Score=87.95 Aligned_cols=133 Identities=14% Similarity=0.178 Sum_probs=82.4
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH-HHHHHcCCCcc---ceeEeCC-----------
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP-SLAEAMGIDAE---NLLIAQP----------- 180 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~-~~~~~~g~~~~---~l~~~~~----------- 180 (264)
-+|+|+++++.|+||+||||++..+.....+.+++|-.-..+.-..+ ...+++|+... .+.+.-+
T Consensus 46 ~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~I 125 (325)
T COG4586 46 EIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLI 125 (325)
T ss_pred ecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHH
Confidence 48999999999999999999999998888888888876665443322 22333332211 1111100
Q ss_pred --CCHHHHHH-------H----------HHHH------------hhcCCccEEEEcCccccccccccCCCcCCCCcHHHH
Q 024705 181 --DSAENLLS-------V----------VDTL------------TKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQS 229 (264)
Q Consensus 181 --~~~ee~~~-------~----------i~~~------------~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~ 229 (264)
.+..++.+ + ++++ .--++|+++++|..+--.. . ..+
T Consensus 126 y~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLD-----V--------~aq 192 (325)
T COG4586 126 YEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLD-----V--------NAQ 192 (325)
T ss_pred HhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcc-----h--------hHH
Confidence 00001110 0 1100 0126889999998774331 1 222
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEcccchHhhhcC
Q 024705 230 RIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKHF 264 (264)
Q Consensus 230 r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~~ 264 (264)
..+.+++++.. .++++||++++|..++++..|
T Consensus 193 ~~ir~Flke~n---~~~~aTVllTTH~~~di~~lc 224 (325)
T COG4586 193 ANIREFLKEYN---EERQATVLLTTHIFDDIATLC 224 (325)
T ss_pred HHHHHHHHHHH---HhhCceEEEEecchhhHHHhh
Confidence 33556777776 789999999999999998765
No 222
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.91 E-value=8.6e-09 Score=92.45 Aligned_cols=38 Identities=26% Similarity=0.414 Sum_probs=31.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+.+|+++.|.|+||||||||+..++.......+.+.|
T Consensus 43 ~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~ 80 (331)
T PRK15079 43 RLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAW 80 (331)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEE
Confidence 37799999999999999999999988766555565544
No 223
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.91 E-value=8.6e-09 Score=89.04 Aligned_cols=31 Identities=23% Similarity=0.392 Sum_probs=27.0
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQK 146 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~ 146 (264)
-+++|+++.|.||||+|||||+..++....+
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 55 (254)
T PRK10418 25 TLQRGRVLALVGGSGSGKSLTCAAALGILPA 55 (254)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3779999999999999999999888876544
No 224
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.91 E-value=1.2e-08 Score=87.46 Aligned_cols=138 Identities=14% Similarity=0.168 Sum_probs=89.6
Q ss_pred HHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC--CH-------HHHHHcCCCcccee
Q 024705 106 LKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL--DP-------SLAEAMGIDAENLL 176 (264)
Q Consensus 106 ~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~--~~-------~~~~~~g~~~~~l~ 176 (264)
.++|.+-= -+.+|+++.|.|++||||||++..++....+.+|.+.|-..+... .. ...+.+|...+.+.
T Consensus 27 ~avd~Vsf--~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ 104 (268)
T COG4608 27 KAVDGVSF--SIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLY 104 (268)
T ss_pred EEecceeE--EEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhh
Confidence 44554432 478999999999999999999999988777667766554333211 11 23445675544332
Q ss_pred EeC-CCCH--HHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEE
Q 024705 177 IAQ-PDSA--ENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFL 253 (264)
Q Consensus 177 ~~~-~~~~--ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i 253 (264)
-++ ..+. .+.+.+.+.+. -+|+++|.|...+.+.. .-+..+.+.|.++. ++.|.+.++|
T Consensus 105 ryPhelSGGQrQRi~IARALa--l~P~liV~DEpvSaLDv-------------SiqaqIlnLL~dlq---~~~~lt~lFI 166 (268)
T COG4608 105 RYPHELSGGQRQRIGIARALA--LNPKLIVADEPVSALDV-------------SVQAQILNLLKDLQ---EELGLTYLFI 166 (268)
T ss_pred cCCcccCchhhhhHHHHHHHh--hCCcEEEecCchhhcch-------------hHHHHHHHHHHHHH---HHhCCeEEEE
Confidence 222 1222 23444445443 58999999998877631 22233567778887 8889999999
Q ss_pred cccchHhhhc
Q 024705 254 NQVKVLLLKH 263 (264)
Q Consensus 254 ~h~~~~~~~~ 263 (264)
+|+...+...
T Consensus 167 sHDL~vv~~i 176 (268)
T COG4608 167 SHDLSVVRYI 176 (268)
T ss_pred EEEHHhhhhh
Confidence 9998776543
No 225
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.91 E-value=1.3e-08 Score=87.18 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=31.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYL 154 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~ 154 (264)
-+.+|+++.|.||||+|||||+..++....+..+.+.+.
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~ 62 (242)
T TIGR03411 24 YVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFG 62 (242)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEC
Confidence 477999999999999999999999888765555655443
No 226
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.91 E-value=1.3e-08 Score=88.82 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=27.3
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhc
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKL 147 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~ 147 (264)
-+.+|+++.|.||||+|||||+..++....+.
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~ 54 (272)
T PRK13547 23 RIEPGRVTALLGRNGAGKSTLLKALAGDLTGG 54 (272)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCc
Confidence 37799999999999999999999888765443
No 227
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.91 E-value=1.9e-08 Score=86.82 Aligned_cols=130 Identities=15% Similarity=0.231 Sum_probs=71.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCe--------EEEEecCCCCCH----HHHHHcCCCc----cc-----
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGY--------CAYLDVENALDP----SLAEAMGIDA----EN----- 174 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~--------v~~~~~e~~~~~----~~~~~~g~~~----~~----- 174 (264)
-+++|+++.|.||||+|||||+..++....+..+. +.|+..+..... ...+.+.+.. +.
T Consensus 26 ~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l 105 (251)
T PRK09544 26 ELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPAL 105 (251)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHH
Confidence 37899999999999999999999888765444443 334433321110 0011110000 00
Q ss_pred --eeE-------eCCCCHHH--HHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHH
Q 024705 175 --LLI-------AQPDSAEN--LLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSL 243 (264)
Q Consensus 175 --l~~-------~~~~~~ee--~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l 243 (264)
+.+ ....+..+ .+...+.++ .+++++++|...+-.. ....+.+.+.|+++.
T Consensus 106 ~~~gl~~~~~~~~~~LSgGq~qrv~laral~--~~p~lllLDEPt~~LD-------------~~~~~~l~~~L~~~~--- 167 (251)
T PRK09544 106 KRVQAGHLIDAPMQKLSGGETQRVLLARALL--NRPQLLVLDEPTQGVD-------------VNGQVALYDLIDQLR--- 167 (251)
T ss_pred HHcCChHHHhCChhhCCHHHHHHHHHHHHHh--cCCCEEEEeCCCcCCC-------------HHHHHHHHHHHHHHH---
Confidence 000 00011111 112222222 5789999998776552 133344556666654
Q ss_pred hccCcEEEEEcccchHhhhc
Q 024705 244 CQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 244 ~~~g~tVi~i~h~~~~~~~~ 263 (264)
++.|.+||+++|..+.+.+.
T Consensus 168 ~~~g~tiiivsH~~~~i~~~ 187 (251)
T PRK09544 168 RELDCAVLMVSHDLHLVMAK 187 (251)
T ss_pred HhcCCEEEEEecCHHHHHHh
Confidence 55689999999999887654
No 228
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.90 E-value=8e-09 Score=90.97 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=31.5
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|++++|.||||||||||+..++....+..+.+.+
T Consensus 33 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 70 (289)
T PRK13645 33 TFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIV 70 (289)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 47899999999999999999999988876555565544
No 229
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.90 E-value=1.4e-08 Score=84.38 Aligned_cols=37 Identities=24% Similarity=0.250 Sum_probs=30.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~ 152 (264)
-+.+|+++.|.||||+|||||+..++....+..+.+.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 58 (198)
T TIGR01189 22 TLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVR 58 (198)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEE
Confidence 3779999999999999999999988876655555443
No 230
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.90 E-value=2e-08 Score=79.32 Aligned_cols=109 Identities=17% Similarity=0.234 Sum_probs=68.3
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHH--HHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENL--LSVVDTL 193 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~--~~~i~~~ 193 (264)
-+++|+++.|.||||+|||||+..++....+..+.+ +++.. ..+++.+ ..+..+. +...+.+
T Consensus 22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i-~~~~~--------~~i~~~~-------~lS~G~~~rv~laral 85 (144)
T cd03221 22 TINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV-TWGST--------VKIGYFE-------QLSGGEKMRLALAKLL 85 (144)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEE-EECCe--------EEEEEEc-------cCCHHHHHHHHHHHHH
Confidence 478999999999999999999988887665555544 44321 1122222 2443332 3334444
Q ss_pred hhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhh
Q 024705 194 TKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLK 262 (264)
Q Consensus 194 ~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~ 262 (264)
+ .+++++++|....-... .....+.+.++ +.+.++++++|..+.+..
T Consensus 86 ~--~~p~illlDEP~~~LD~-------------~~~~~l~~~l~-------~~~~til~~th~~~~~~~ 132 (144)
T cd03221 86 L--ENPNLLLLDEPTNHLDL-------------ESIEALEEALK-------EYPGTVILVSHDRYFLDQ 132 (144)
T ss_pred h--cCCCEEEEeCCccCCCH-------------HHHHHHHHHHH-------HcCCEEEEEECCHHHHHH
Confidence 3 58899999987765521 22222333333 335799999999877654
No 231
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.89 E-value=1.2e-08 Score=89.25 Aligned_cols=38 Identities=29% Similarity=0.367 Sum_probs=31.4
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+.+|+++.|.|+||+|||||+..++....+..+.+.|
T Consensus 29 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 66 (277)
T PRK13642 29 SITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKI 66 (277)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEE
Confidence 37799999999999999999999888776655665544
No 232
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.89 E-value=9.2e-09 Score=90.56 Aligned_cols=58 Identities=21% Similarity=0.221 Sum_probs=40.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC----C---HHHHHHcCCCccc
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL----D---PSLAEAMGIDAEN 174 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~----~---~~~~~~~g~~~~~ 174 (264)
-+++|+++.|.||||+|||||+..++....+..+.+ +++..... . ..+.+.+|+.+++
T Consensus 28 ~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~~i~~~~~~~~~~~~~~~ig~v~q~ 92 (288)
T PRK13643 28 EVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKV-TVGDIVVSSTSKQKEIKPVRKKVGVVFQF 92 (288)
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEE-EECCEECccccccccHHHHHhhEEEEecC
Confidence 478999999999999999999999887665555555 44433211 1 1234557776665
No 233
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.89 E-value=1.2e-08 Score=88.18 Aligned_cols=38 Identities=26% Similarity=0.409 Sum_probs=30.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.|+||+|||||+..++....+..+.+.+
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (255)
T PRK11231 24 SLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFL 61 (255)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEE
Confidence 36799999999999999999999888766555555544
No 234
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.89 E-value=1.4e-08 Score=88.89 Aligned_cols=59 Identities=24% Similarity=0.286 Sum_probs=39.4
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC--C--HHHHHHcCCCccc
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL--D--PSLAEAMGIDAEN 174 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~--~--~~~~~~~g~~~~~ 174 (264)
-+.+|+++.|.||||+|||||+..++.......+.+.|-..+... . ..+.+.+++.+++
T Consensus 24 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~ 86 (275)
T PRK13639 24 KAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQN 86 (275)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeC
Confidence 478999999999999999999998887655555555443322111 1 1234556766665
No 235
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.89 E-value=1.2e-08 Score=89.85 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=39.3
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC-----C--HHHHHHcCCCccc
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-----D--PSLAEAMGIDAEN 174 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~-----~--~~~~~~~g~~~~~ 174 (264)
-+++|+++.|.||||+|||||+..++....+..+.+ +++..... . ..+...+|+.+++
T Consensus 29 ~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i-~~~g~~~~~~~~~~~~~~~~~~ig~v~q~ 93 (287)
T PRK13641 29 ELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTI-TIAGYHITPETGNKNLKKLRKKVSLVFQF 93 (287)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEECccccccchHHHHHhceEEEEeC
Confidence 478999999999999999999988887655555554 44433211 1 1233456766665
No 236
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.89 E-value=1.3e-08 Score=88.86 Aligned_cols=38 Identities=24% Similarity=0.332 Sum_probs=30.7
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||+|||||+..++....+..|.+.+
T Consensus 31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~ 68 (271)
T PRK13632 31 EINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKI 68 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 57899999999999999999998887766555555443
No 237
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.88 E-value=2.1e-08 Score=85.40 Aligned_cols=60 Identities=23% Similarity=0.366 Sum_probs=40.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC--CC-HHHHHHcCCCcccee
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA--LD-PSLAEAMGIDAENLL 176 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~--~~-~~~~~~~g~~~~~l~ 176 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.+ +.+.. .. ..+.+.+++.+++..
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~-~g~~~~~~~~~~~~~~i~~~~q~~~ 86 (234)
T cd03251 24 DIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILI-DGHDVRDYTLASLRRQIGLVSQDVF 86 (234)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEE-CCEEhhhCCHHHHHhhEEEeCCCCe
Confidence 37899999999999999999999888776666666544 33221 11 123445666555433
No 238
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.88 E-value=1.8e-08 Score=87.77 Aligned_cols=38 Identities=29% Similarity=0.462 Sum_probs=30.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+.+|+++.|.||||+|||||+..++....+..+.+.+
T Consensus 34 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~ 71 (268)
T PRK10419 34 SLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSW 71 (268)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 47899999999999999999999888765555555544
No 239
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.87 E-value=1.5e-08 Score=88.56 Aligned_cols=59 Identities=27% Similarity=0.383 Sum_probs=39.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC-C--HHHHHHcCCCccc
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-D--PSLAEAMGIDAEN 174 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~-~--~~~~~~~g~~~~~ 174 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.+.+.+... . ..+.+.+|+.+++
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~ 85 (274)
T PRK13644 24 VIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQN 85 (274)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEC
Confidence 378999999999999999999999888665555555443322111 1 2334456665554
No 240
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.87 E-value=1.7e-08 Score=86.06 Aligned_cols=38 Identities=26% Similarity=0.360 Sum_probs=31.5
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.+
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~ 60 (236)
T cd03253 23 TIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEE
Confidence 47899999999999999999999988876555665544
No 241
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.87 E-value=2.1e-08 Score=87.96 Aligned_cols=58 Identities=28% Similarity=0.331 Sum_probs=39.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC----HHHHHHcCCCccc
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD----PSLAEAMGIDAEN 174 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~----~~~~~~~g~~~~~ 174 (264)
-+.+|+++.|.|+||+|||||+..++....+..|.+. ++...... ..+.+.+|+.+++
T Consensus 32 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~-i~g~~i~~~~~~~~~~~~i~~v~q~ 93 (280)
T PRK13633 32 EVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVY-VDGLDTSDEENLWDIRNKAGMVFQN 93 (280)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE-ECCEeccccccHHHHhhheEEEecC
Confidence 4789999999999999999999888877665555554 44332211 1234456665554
No 242
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.87 E-value=1.3e-08 Score=89.19 Aligned_cols=38 Identities=18% Similarity=0.202 Sum_probs=31.3
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.+
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~ 66 (280)
T PRK13649 29 TIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRV 66 (280)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 47899999999999999999998888766555555544
No 243
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=98.85 E-value=2.4e-08 Score=91.71 Aligned_cols=63 Identities=21% Similarity=0.226 Sum_probs=47.8
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC--CCHHHHHHcCCCccceeEeC
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA--LDPSLAEAMGIDAENLLIAQ 179 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~--~~~~~~~~~g~~~~~l~~~~ 179 (264)
+.+|+...|+||+|||||||++.+.....+..+.|-+-..+-. .....-+.+||-+|++.+++
T Consensus 359 l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~ 423 (580)
T COG4618 359 LQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD 423 (580)
T ss_pred ecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecC
Confidence 6799999999999999999999999888776666554333322 22256778899999887654
No 244
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.85 E-value=1.5e-08 Score=95.95 Aligned_cols=38 Identities=21% Similarity=0.371 Sum_probs=30.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+.+|+++.|.||||||||||+..++....+..+.+.+
T Consensus 26 ~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~ 63 (501)
T PRK10762 26 NVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILY 63 (501)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 47799999999999999999998888766555555544
No 245
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.85 E-value=2e-08 Score=84.86 Aligned_cols=38 Identities=29% Similarity=0.230 Sum_probs=30.3
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEe
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~ 155 (264)
+++|+++.|.|+||+|||||+..++....+..+.+ +++
T Consensus 28 i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i-~~~ 65 (220)
T TIGR02982 28 INPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSL-KVL 65 (220)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE-EEC
Confidence 67999999999999999999988887654445544 444
No 246
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.85 E-value=3e-08 Score=76.36 Aligned_cols=114 Identities=20% Similarity=0.325 Sum_probs=77.4
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhhc-----CCeEEEEecCCCCCH-----HHHHHcCCCccceeEeCCCCHHHHH
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQKL-----GGYCAYLDVENALDP-----SLAEAMGIDAENLLIAQPDSAENLL 187 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~-----g~~v~~~~~e~~~~~-----~~~~~~g~~~~~l~~~~~~~~ee~~ 187 (264)
+.+.++.|.||+|+|||+++..++...... ...++++........ .....++..... ..+..++.
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~l~ 76 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS-----RQTSDELR 76 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-----TS-HHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-----cCCHHHHH
Confidence 356789999999999999999999988653 667888876554432 345556655444 45677788
Q ss_pred HHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEccc
Q 024705 188 SVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQV 256 (264)
Q Consensus 188 ~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~ 256 (264)
..+...+...+..+++||.+..+. . ......|+.+. .+.++.+|++.+.
T Consensus 77 ~~~~~~l~~~~~~~lviDe~~~l~-~----------------~~~l~~l~~l~---~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 77 SLLIDALDRRRVVLLVIDEADHLF-S----------------DEFLEFLRSLL---NESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHHCTEEEEEEETTHHHH-T----------------HHHHHHHHHHT---CSCBEEEEEEESS
T ss_pred HHHHHHHHhcCCeEEEEeChHhcC-C----------------HHHHHHHHHHH---hCCCCeEEEEECh
Confidence 888777777777899999999863 1 11334555554 6889999999876
No 247
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.84 E-value=2.1e-08 Score=89.61 Aligned_cols=38 Identities=29% Similarity=0.281 Sum_probs=31.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.|+||||||||+..++....+..|.+.+
T Consensus 48 ~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i 85 (320)
T PRK13631 48 TFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQV 85 (320)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEE
Confidence 47899999999999999999998888766555665544
No 248
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.84 E-value=2e-08 Score=85.69 Aligned_cols=38 Identities=29% Similarity=0.357 Sum_probs=31.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.|
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 61 (237)
T cd03252 24 RIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLV 61 (237)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEE
Confidence 37899999999999999999999988877666666554
No 249
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.84 E-value=5.4e-09 Score=88.65 Aligned_cols=69 Identities=23% Similarity=0.266 Sum_probs=44.7
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHH-----hhcCCeEEEEecCCCC--C---HHHHHHcCCCccceeEeCCCCHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEA-----QKLGGYCAYLDVENAL--D---PSLAEAMGIDAENLLIAQPDSAEN 185 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~-----~~~g~~v~~~~~e~~~--~---~~~~~~~g~~~~~l~~~~~~~~ee 185 (264)
-+++|+++.|.||||+|||||+..++... .+..+.+.+ +.+... . ..+.+.+++.+++..++ ..++.+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~-~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e 99 (227)
T cd03260 22 DIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLL-DGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYD 99 (227)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEE-CCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHH
Confidence 47799999999999999999999888876 555555544 332211 1 12344577766665444 344443
Q ss_pred H
Q 024705 186 L 186 (264)
Q Consensus 186 ~ 186 (264)
.
T Consensus 100 ~ 100 (227)
T cd03260 100 N 100 (227)
T ss_pred H
Confidence 3
No 250
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.84 E-value=7.9e-09 Score=87.67 Aligned_cols=72 Identities=15% Similarity=0.238 Sum_probs=46.7
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHh---hcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ---KLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLS 188 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~---~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~ 188 (264)
-+++|+++.|.||||+|||||+..++.... +..+.+.+ +........+.+.+++.+++..++...++.+.+.
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~-~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 103 (226)
T cd03234 29 HVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILF-NGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLT 103 (226)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEE-CCEECChHHhcccEEEeCCCCccCcCCcHHHHHH
Confidence 478999999999999999999998887765 44555544 3322211233445676666655544445554443
No 251
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.84 E-value=1.7e-08 Score=83.40 Aligned_cols=64 Identities=17% Similarity=0.156 Sum_probs=42.7
Q ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHHHHhh-----cCCeEEEEecCCCC---CH-HHHHHcCCCccceeEe
Q 024705 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQK-----LGGYCAYLDVENAL---DP-SLAEAMGIDAENLLIA 178 (264)
Q Consensus 115 gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~-----~g~~v~~~~~e~~~---~~-~~~~~~g~~~~~l~~~ 178 (264)
..+++++++.+.||+|||||||+..+-.-... -.|.+.|...+.-. +. ...+++|+..|....+
T Consensus 28 l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPF 100 (253)
T COG1117 28 LDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPF 100 (253)
T ss_pred eeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCC
Confidence 47999999999999999999998876432221 22445554433221 12 5678899988865443
No 252
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.84 E-value=1.8e-08 Score=95.50 Aligned_cols=38 Identities=21% Similarity=0.255 Sum_probs=31.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||||||||+..++....+..|.+.+
T Consensus 27 ~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~ 64 (510)
T PRK09700 27 TVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITI 64 (510)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEE
Confidence 47799999999999999999998888766555565544
No 253
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.84 E-value=2.5e-08 Score=89.47 Aligned_cols=38 Identities=26% Similarity=0.440 Sum_probs=30.3
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhc---CCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKL---GGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~---g~~v~~ 153 (264)
-+.+|+++.|.|+||||||||+..++....+. .|.+.|
T Consensus 38 ~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~ 78 (330)
T PRK09473 38 SLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATF 78 (330)
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEE
Confidence 37899999999999999999999888766443 455544
No 254
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.84 E-value=2.2e-08 Score=95.23 Aligned_cols=38 Identities=24% Similarity=0.424 Sum_probs=30.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHH--hhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEA--QKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~--~~~g~~v~~ 153 (264)
-+.+|+++.|.||||||||||+..++... .+..+.+.+
T Consensus 22 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~ 61 (520)
T TIGR03269 22 TIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIY 61 (520)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEE
Confidence 47899999999999999999999988875 344555544
No 255
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.84 E-value=2.9e-08 Score=85.92 Aligned_cols=39 Identities=31% Similarity=0.328 Sum_probs=31.9
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEe
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~ 155 (264)
+.+|+++.|.||||+|||||+..++....+..|.+.|..
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 67 (258)
T PRK11701 29 LYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRM 67 (258)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECC
Confidence 789999999999999999999988887655566655433
No 256
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=98.83 E-value=2.8e-08 Score=88.97 Aligned_cols=30 Identities=27% Similarity=0.489 Sum_probs=26.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
-+.+|+++.|.|+||||||||+..++....
T Consensus 29 ~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 29 SVKQGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 478999999999999999999999887654
No 257
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.83 E-value=1e-08 Score=85.01 Aligned_cols=38 Identities=24% Similarity=0.252 Sum_probs=31.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|++++|.|+||+|||||+..++....+..+.+.+
T Consensus 22 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (195)
T PRK13541 22 TFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYY 59 (195)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 47799999999999999999999888876555555543
No 258
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.83 E-value=2.5e-08 Score=85.22 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=31.7
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.+
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 62 (238)
T cd03249 25 TIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILL 62 (238)
T ss_pred EecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEE
Confidence 37899999999999999999999888876666666544
No 259
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.83 E-value=3.2e-08 Score=93.38 Aligned_cols=131 Identities=15% Similarity=0.150 Sum_probs=75.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC--C-HHHHHHcCCCccceeE--e-C-----CCCHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL--D-PSLAEAMGIDAENLLI--A-Q-----PDSAE 184 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~--~-~~~~~~~g~~~~~l~~--~-~-----~~~~e 184 (264)
-+++|+++.|.||||||||||+..++....+..+.+. ++..... . ..+.+.+|+.+++... . . ..++.
T Consensus 25 ~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~-~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~ 103 (490)
T PRK10938 25 TLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQ-SQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTA 103 (490)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEE-ECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHH
Confidence 4789999999999999999999888876655555554 3332211 1 1233446666554211 0 0 11111
Q ss_pred HHH-------HHHHHHh-----------------------------hcCCccEEEEcCccccccccccCCCcCCCCcHHH
Q 024705 185 NLL-------SVVDTLT-----------------------------KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQ 228 (264)
Q Consensus 185 e~~-------~~i~~~~-----------------------------~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q 228 (264)
+.+ ..+..++ -..+++++++|...+-. +...
T Consensus 104 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~L-------------D~~~ 170 (490)
T PRK10938 104 EIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGL-------------DVAS 170 (490)
T ss_pred HhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC-------------CHHH
Confidence 110 0010000 01356777777665544 2244
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhcC
Q 024705 229 SRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKHF 264 (264)
Q Consensus 229 ~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~~ 264 (264)
.+.+.+.|++++ + .|.|||+++|..+.+...|
T Consensus 171 ~~~l~~~l~~~~---~-~g~tvii~tH~~~~~~~~~ 202 (490)
T PRK10938 171 RQQLAELLASLH---Q-SGITLVLVLNRFDEIPDFV 202 (490)
T ss_pred HHHHHHHHHHHH---h-cCCeEEEEeCCHHHHHhhC
Confidence 455666666653 3 4899999999988776543
No 260
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.83 E-value=1.9e-08 Score=107.19 Aligned_cols=132 Identities=13% Similarity=0.138 Sum_probs=81.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC-HHHHHHcCCCccceeEeCCCCHHHHHHHHHHH-
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD-PSLAEAMGIDAENLLIAQPDSAENLLSVVDTL- 193 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~-~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~- 193 (264)
++++|+++.|.||||+||||++..++....+..|.+.+.+.+.... ....+.+|+-+|...+....++.|.+......
T Consensus 1961 ~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~ 2040 (2272)
T TIGR01257 1961 GVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR 2040 (2272)
T ss_pred EEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhc
Confidence 6899999999999999999999888887766666664433222111 12344578777765444444444333221100
Q ss_pred -------------------------------------------hhcCCccEEEEcCccccccccccCCCcCCCCcHHHHH
Q 024705 194 -------------------------------------------TKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSR 230 (264)
Q Consensus 194 -------------------------------------------~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r 230 (264)
.--++|+++++|+.++-+ +...++
T Consensus 2041 g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGL-------------Dp~sr~ 2107 (2272)
T TIGR01257 2041 GVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGM-------------DPQARR 2107 (2272)
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCC-------------CHHHHH
Confidence 001456667777655443 223444
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcccchHhhhcC
Q 024705 231 IMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKHF 264 (264)
Q Consensus 231 ~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~~ 264 (264)
.+.+.++++ ++.|++||+++|..++++..|
T Consensus 2108 ~l~~lL~~l----~~~g~TIILtTH~mee~e~lc 2137 (2272)
T TIGR01257 2108 MLWNTIVSI----IREGRAVVLTSHSMEECEALC 2137 (2272)
T ss_pred HHHHHHHHH----HhCCCEEEEEeCCHHHHHHhC
Confidence 455555555 344999999999999988755
No 261
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.83 E-value=2.6e-08 Score=79.53 Aligned_cols=125 Identities=17% Similarity=0.347 Sum_probs=78.4
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC--H-HHHHHcCCCc-----------cceeEe---
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD--P-SLAEAMGIDA-----------ENLLIA--- 178 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~--~-~~~~~~g~~~-----------~~l~~~--- 178 (264)
-+.+|+.+.|.||+|||||||...++....+..+ .++|..+.-.. + ....++.+.. +|+.+-
T Consensus 25 ~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G-~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~ 103 (223)
T COG4619 25 SVRAGEFIAITGPSGCGKSTLLKIVASLISPTSG-TLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQI 103 (223)
T ss_pred eecCCceEEEeCCCCccHHHHHHHHHhccCCCCc-eEEEcCccccccChHHHHHHHHHHHcCccccccchhhccccchHH
Confidence 4789999999999999999988888776655544 56666554322 2 2333332221 122110
Q ss_pred ---CCC--------------------------CHH-HHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHH
Q 024705 179 ---QPD--------------------------SAE-NLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQ 228 (264)
Q Consensus 179 ---~~~--------------------------~~e-e~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q 228 (264)
.++ ..| +....++.+ ...|+++.+|.+++-.. ...
T Consensus 104 r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~L--q~~P~ILLLDE~TsALD-------------~~n 168 (223)
T COG4619 104 RNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNL--QFMPKILLLDEITSALD-------------ESN 168 (223)
T ss_pred hccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHh--hcCCceEEecCchhhcC-------------hhh
Confidence 000 011 223334444 36789999998887662 134
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEEcccchH
Q 024705 229 SRIMTQALRKIHYSLCQSHTLIIFLNQVKVL 259 (264)
Q Consensus 229 ~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~ 259 (264)
.+.+...+.++. ++.+++|+-|+|.-+.
T Consensus 169 kr~ie~mi~~~v---~~q~vAv~WiTHd~dq 196 (223)
T COG4619 169 KRNIEEMIHRYV---REQNVAVLWITHDKDQ 196 (223)
T ss_pred HHHHHHHHHHHh---hhhceEEEEEecChHH
Confidence 455667777776 6889999999998765
No 262
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.83 E-value=3.3e-08 Score=82.70 Aligned_cols=38 Identities=26% Similarity=0.384 Sum_probs=31.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.|+||+|||||+..++....+..+.+.+
T Consensus 30 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 67 (207)
T cd03369 30 KVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEI 67 (207)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEE
Confidence 37899999999999999999999888766555555544
No 263
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.82 E-value=2.3e-08 Score=96.99 Aligned_cols=40 Identities=23% Similarity=0.369 Sum_probs=31.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEe
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~ 155 (264)
-+++|+++.|.|+||||||||+..++....+..|.+.|..
T Consensus 346 ~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g 385 (623)
T PRK10261 346 DLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNG 385 (623)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECC
Confidence 3679999999999999999999888876655566665533
No 264
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.81 E-value=2.7e-08 Score=84.46 Aligned_cols=37 Identities=27% Similarity=0.327 Sum_probs=30.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~ 152 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.
T Consensus 25 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~ 61 (229)
T cd03254 25 SIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQIL 61 (229)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence 4789999999999999999999999887655555543
No 265
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.81 E-value=8.1e-08 Score=81.37 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=29.1
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeE
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v 151 (264)
+++|+++.|.|+||||||||+..++.......+.+
T Consensus 3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i 37 (223)
T TIGR03771 3 ADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTV 37 (223)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 67999999999999999999998887665545544
No 266
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.81 E-value=7.4e-08 Score=79.68 Aligned_cols=60 Identities=23% Similarity=0.218 Sum_probs=48.4
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC--HHHHHHcCCCccce
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD--PSLAEAMGIDAENL 175 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~--~~~~~~~g~~~~~l 175 (264)
-+++|++..|.||||+|||||+..+...+.+.++.|.|+...-..- ..+++..++-+|+-
T Consensus 23 ~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s 84 (259)
T COG4559 23 DLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNS 84 (259)
T ss_pred eccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCc
Confidence 3789999999999999999999999999998899999887554332 25676667766654
No 267
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.81 E-value=8.5e-08 Score=73.40 Aligned_cols=92 Identities=28% Similarity=0.338 Sum_probs=57.8
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhcCC
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGS 198 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~~ 198 (264)
++..++|.||||+||||++..++..+...+..+++++.+............ ..................+....+...
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLL--IIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHh--hhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 367899999999999999999999887665578888877665542221110 000000011222333334444444445
Q ss_pred ccEEEEcCcccccc
Q 024705 199 IDVIVVDSVAALIP 212 (264)
Q Consensus 199 ~~~vvIDsl~~~~~ 212 (264)
+.+++||++..+..
T Consensus 79 ~~viiiDei~~~~~ 92 (148)
T smart00382 79 PDVLILDEITSLLD 92 (148)
T ss_pred CCEEEEECCcccCC
Confidence 79999999998874
No 268
>PF13479 AAA_24: AAA domain
Probab=98.80 E-value=4.1e-08 Score=82.70 Aligned_cols=127 Identities=24% Similarity=0.201 Sum_probs=77.0
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhh-cCC
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK-SGS 198 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~-~~~ 198 (264)
+-.++|+|+||+||||++..+ .+++|+++|........ . .+...++..+.+++.+.+..+.. ..+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~--------~k~l~id~E~g~~~~~~----~--~~~~~i~i~s~~~~~~~~~~l~~~~~~ 68 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL--------PKPLFIDTENGSDSLKF----L--DDGDVIPITSWEDFLEALDELEEDEAD 68 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC--------CCeEEEEeCCCccchhh----h--cCCCeeCcCCHHHHHHHHHHHHhccCC
Confidence 346899999999999998876 67999999987433110 0 02222334477788777765533 358
Q ss_pred ccEEEEcCccccccc--cccC-------CCcCCCCcHHHHHHHHHHHHHHHHH-HhccCcEEEEEcccchHh
Q 024705 199 IDVIVVDSVAALIPK--CEIG-------VPINGMYSDAQSRIMTQALRKIHYS-LCQSHTLIIFLNQVKVLL 260 (264)
Q Consensus 199 ~~~vvIDsl~~~~~~--~~~~-------~~~~~~~~~~q~r~i~~~L~~l~~~-l~~~g~tVi~i~h~~~~~ 260 (264)
++.||||+++.+... .... .+.+..........+.+.+.++... +...|..||++.|...+-
T Consensus 69 y~tiVIDsis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~i~~l~~~~~~~VI~tah~~~~~ 140 (213)
T PF13479_consen 69 YDTIVIDSISWLEDMCLEYICRQNKKKIKRSGDPDYGKGYGELQQEFMRFIDKLLNALGKNVIFTAHAKEEE 140 (213)
T ss_pred CCEEEEECHHHHHHHHHHHHhhhhcccccccCCCcccchHHHHHHHHHHHHHHHHHHCCCcEEEEEEEEEEE
Confidence 999999999986421 1111 0101111112222334444444443 356899999999986543
No 269
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.80 E-value=1.2e-07 Score=76.69 Aligned_cols=113 Identities=14% Similarity=0.111 Sum_probs=65.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEe-------------CCCC
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIA-------------QPDS 182 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~-------------~~~~ 182 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.+ +.. +.+++.+++..+. ...+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~-~~~--------~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS 93 (166)
T cd03223 23 EIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM-PEG--------EDLLFLPQRPYLPLGTLREQLIYPWDDVLS 93 (166)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE-CCC--------ceEEEECCCCccccccHHHHhhccCCCCCC
Confidence 37799999999999999999999988766555554432 211 1122222221111 1122
Q ss_pred HH--HHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchH
Q 024705 183 AE--NLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVL 259 (264)
Q Consensus 183 ~e--e~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~ 259 (264)
.- ..+...+.++ .+++++++|+..+-... ..++.+.+.++ +.+.++|+++|....
T Consensus 94 ~G~~~rv~laral~--~~p~~lllDEPt~~LD~-------------~~~~~l~~~l~-------~~~~tiiivsh~~~~ 150 (166)
T cd03223 94 GGEQQRLAFARLLL--HKPKFVFLDEATSALDE-------------ESEDRLYQLLK-------ELGITVISVGHRPSL 150 (166)
T ss_pred HHHHHHHHHHHHHH--cCCCEEEEECCccccCH-------------HHHHHHHHHHH-------HhCCEEEEEeCChhH
Confidence 22 2222333333 58899999987766521 22232333333 336899999998754
No 270
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.80 E-value=2.6e-08 Score=94.42 Aligned_cols=38 Identities=24% Similarity=0.355 Sum_probs=29.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhh--cCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQK--LGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~--~g~~v~~ 153 (264)
-+++|+++.|.||||||||||+..++....+ ..+.+.|
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~ 66 (506)
T PRK13549 27 KVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIF 66 (506)
T ss_pred EEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEE
Confidence 4779999999999999999998888876543 3444443
No 271
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.79 E-value=2.6e-08 Score=93.99 Aligned_cols=38 Identities=24% Similarity=0.278 Sum_probs=30.4
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||||||||+..++....+..+.+.+
T Consensus 20 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 57 (491)
T PRK10982 20 KVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILF 57 (491)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEE
Confidence 47899999999999999999988888765554555443
No 272
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.79 E-value=6.7e-08 Score=81.94 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=30.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~ 152 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.
T Consensus 44 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~ 80 (224)
T cd03220 44 EVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVT 80 (224)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 3779999999999999999999988886655455443
No 273
>PRK13409 putative ATPase RIL; Provisional
Probab=98.79 E-value=3.1e-08 Score=95.31 Aligned_cols=131 Identities=18% Similarity=0.187 Sum_probs=74.6
Q ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEE------EEecCCCCCH------HHHH----------------
Q 024705 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA------YLDVENALDP------SLAE---------------- 166 (264)
Q Consensus 115 gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~------~~~~e~~~~~------~~~~---------------- 166 (264)
+-+.+|+++.|.||||+|||||+..++....+..+.+. |+..+..... ....
T Consensus 360 ~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~ 439 (590)
T PRK13409 360 GEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIK 439 (590)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHH
Confidence 35789999999999999999999998876655455442 3332211110 0000
Q ss_pred HcCCCccceeEeCCCCHHHH--HHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHh
Q 024705 167 AMGIDAENLLIAQPDSAENL--LSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLC 244 (264)
Q Consensus 167 ~~g~~~~~l~~~~~~~~ee~--~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~ 244 (264)
.+|+....-......+.-+. +.+.+.+ ..+++++++|..++... ...+..+.+.|++++ +
T Consensus 440 ~l~l~~~~~~~~~~LSGGe~QRvaiAraL--~~~p~llLLDEPt~~LD-------------~~~~~~l~~~l~~l~---~ 501 (590)
T PRK13409 440 PLQLERLLDKNVKDLSGGELQRVAIAACL--SRDADLYLLDEPSAHLD-------------VEQRLAVAKAIRRIA---E 501 (590)
T ss_pred HCCCHHHHhCCcccCCHHHHHHHHHHHHH--hcCCCEEEEeCCccCCC-------------HHHHHHHHHHHHHHH---H
Confidence 00110000000001111111 1122222 25788999998776652 245555667777775 6
Q ss_pred ccCcEEEEEcccchHhhhc
Q 024705 245 QSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 245 ~~g~tVi~i~h~~~~~~~~ 263 (264)
+.|.+||+++|....+...
T Consensus 502 ~~g~tviivsHD~~~~~~~ 520 (590)
T PRK13409 502 EREATALVVDHDIYMIDYI 520 (590)
T ss_pred hCCCEEEEEeCCHHHHHHh
Confidence 6799999999998876543
No 274
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.79 E-value=4.8e-08 Score=82.43 Aligned_cols=38 Identities=29% Similarity=0.418 Sum_probs=31.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.+
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 63 (221)
T cd03244 26 SIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILI 63 (221)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEE
Confidence 47899999999999999999999888776655666544
No 275
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.79 E-value=3.1e-08 Score=93.70 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=31.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||+|||||+..++....+..|.+.|
T Consensus 26 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~ 63 (501)
T PRK11288 26 DCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILI 63 (501)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 57899999999999999999998888766555555544
No 276
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.78 E-value=6e-08 Score=84.12 Aligned_cols=31 Identities=16% Similarity=0.288 Sum_probs=27.3
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQK 146 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~ 146 (264)
-+++|+++.|.|+||+|||||+..++.....
T Consensus 29 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~ 59 (261)
T PRK14258 29 EIYQSKVTAIIGPSGCGKSTFLKCLNRMNEL 59 (261)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcccCC
Confidence 3789999999999999999999888877654
No 277
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.78 E-value=4e-08 Score=84.56 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=26.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
-+++|+++.|.||||||||||+..++....
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14247 25 EIPDNTITALMGPSGSGKSTLLRVFNRLIE 54 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 477999999999999999999998887654
No 278
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.77 E-value=4.4e-08 Score=91.68 Aligned_cols=41 Identities=24% Similarity=0.308 Sum_probs=35.8
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecC
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e 157 (264)
+.+|+++.|.|++||||||++..++....+.++.+.|...+
T Consensus 314 l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~ 354 (539)
T COG1123 314 LREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD 354 (539)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc
Confidence 67899999999999999999999998887877777776654
No 279
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.77 E-value=5.9e-08 Score=84.60 Aligned_cols=29 Identities=21% Similarity=0.525 Sum_probs=25.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
-+++|+++.|.||||||||||+..++...
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 63 (269)
T PRK14259 35 DIPRGKVTALIGPSGCGKSTVLRSLNRMN 63 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 47899999999999999999988888754
No 280
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=98.77 E-value=2.6e-08 Score=89.15 Aligned_cols=60 Identities=17% Similarity=0.097 Sum_probs=34.0
Q ss_pred EEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHH
Q 024705 125 IYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAE 184 (264)
Q Consensus 125 I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~e 184 (264)
|.||||||||||+..++....+..|.+.+-..+........+.+|+.+++..++...++.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~ 60 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVE 60 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHH
Confidence 579999999999988887665555555443222111112233456655554444333333
No 281
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.77 E-value=8.2e-08 Score=82.78 Aligned_cols=29 Identities=14% Similarity=0.304 Sum_probs=25.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
-+++|+++.|.||||+|||||+..++...
T Consensus 28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 28 EFEQNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 47899999999999999999998888754
No 282
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.77 E-value=6.4e-08 Score=83.75 Aligned_cols=36 Identities=17% Similarity=0.197 Sum_probs=31.2
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEE
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~ 152 (264)
+.+|+++.|.||||+|||||+..++....+..|.+.
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~ 58 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFD 58 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEe
Confidence 679999999999999999999888887766666664
No 283
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.76 E-value=1e-07 Score=83.15 Aligned_cols=36 Identities=28% Similarity=0.386 Sum_probs=29.3
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v 151 (264)
-+++|+++.|.||||+|||||+..++....+..+.+
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i 64 (272)
T PRK15056 29 TVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKI 64 (272)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 377999999999999999999998887655444444
No 284
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.76 E-value=1.1e-08 Score=87.96 Aligned_cols=69 Identities=17% Similarity=0.191 Sum_probs=44.5
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhc-----CCeEEEEecCCCC---CH-HHHHHcCCCccceeEeCCCCHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKL-----GGYCAYLDVENAL---DP-SLAEAMGIDAENLLIAQPDSAEN 185 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~-----g~~v~~~~~e~~~---~~-~~~~~~g~~~~~l~~~~~~~~ee 185 (264)
-+++|+++.|.|+||+|||||+..++....+. .+.+.+...+... .. .+.+.+++.+++..+.. .++.+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e 100 (247)
T TIGR00972 23 DIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYD 100 (247)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHH
Confidence 47899999999999999999999888766554 5555543222111 11 23456777766654443 44443
No 285
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.76 E-value=1.9e-08 Score=81.76 Aligned_cols=119 Identities=13% Similarity=0.223 Sum_probs=69.5
Q ss_pred cEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCC----Cccce-eEeCCCCHHHHHHHHHHHhh
Q 024705 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGI----DAENL-LIAQPDSAENLLSVVDTLTK 195 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~----~~~~l-~~~~~~~~ee~~~~i~~~~~ 195 (264)
.+++|.|+||||||+++..++... +.+++|+.+....+.+..+++.. .++.. .+..+.+..+ .+...
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~---~~~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~---~i~~~-- 73 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS---GLQVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAE---LLRAD-- 73 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc---CCCcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHH---HHHhh--
Confidence 468999999999999999997653 55788998876665544333211 12222 2222333333 33322
Q ss_pred cCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEccc
Q 024705 196 SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQV 256 (264)
Q Consensus 196 ~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~ 256 (264)
..+.++|+||+++.+... .+..+. ... +...+.++...+++.++++|+|+..
T Consensus 74 ~~~~~~VlID~Lt~~~~n-~l~~~~-----~~~---~~~~l~~li~~L~~~~~tvVlVs~E 125 (170)
T PRK05800 74 AAPGRCVLVDCLTTWVTN-LLFEEG-----EEA---IAAEIDALLAALQQLPAKIILVTNE 125 (170)
T ss_pred cCCCCEEEehhHHHHHHH-Hhcccc-----hHH---HHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 135678999999999742 211110 011 2234445555557788888877753
No 286
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.76 E-value=7.4e-08 Score=86.45 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=26.0
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
-+.+|+++.|.|+||||||||+..++...
T Consensus 29 ~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 29 TLTEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 47899999999999999999999887755
No 287
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.74 E-value=8e-08 Score=80.16 Aligned_cols=36 Identities=39% Similarity=0.621 Sum_probs=30.0
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v 151 (264)
-+++|+++.|.||||+|||||+..++....+..+.+
T Consensus 27 ~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i 62 (204)
T cd03250 27 EVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSV 62 (204)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeE
Confidence 478999999999999999999999888765555544
No 288
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.74 E-value=1.1e-07 Score=82.16 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=26.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQK 146 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~ 146 (264)
-+++|+++.|.|+||+|||||+..++....+
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~ 59 (254)
T PRK14273 29 KILKNSITALIGPSGCGKSTFLRTLNRMNDL 59 (254)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccccC
Confidence 3779999999999999999999888876543
No 289
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.74 E-value=1e-07 Score=82.04 Aligned_cols=29 Identities=14% Similarity=0.331 Sum_probs=25.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
-+.+|+++.|.||||||||||+..++...
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14240 25 DIEENQVTALIGPSGCGKSTFLRTLNRMN 53 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 37799999999999999999988888754
No 290
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.74 E-value=7.1e-08 Score=81.36 Aligned_cols=38 Identities=29% Similarity=0.309 Sum_probs=30.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.|
T Consensus 26 ~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 63 (220)
T cd03245 26 TIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLL 63 (220)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEE
Confidence 36799999999999999999999888766555555443
No 291
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.74 E-value=5.7e-08 Score=92.14 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=31.0
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEE
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYL 154 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~ 154 (264)
+++|+++.|.||||||||||+..++....+..+.+.|.
T Consensus 286 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~ 323 (510)
T PRK09700 286 VCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLN 323 (510)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEEC
Confidence 67899999999999999999998887665555655443
No 292
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.74 E-value=1.1e-07 Score=89.10 Aligned_cols=133 Identities=12% Similarity=0.114 Sum_probs=79.4
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhc----CCeEEEEecCCCCCH------HHHHHcCCCccce-eEeCC-CC-
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKL----GGYCAYLDVENALDP------SLAEAMGIDAENL-LIAQP-DS- 182 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~----g~~v~~~~~e~~~~~------~~~~~~g~~~~~l-~~~~~-~~- 182 (264)
-+.+|+++.|.|++||||||+++.++...... ++.++|-..|...-. .+.+.+++.+|+. ...+| .+
T Consensus 31 ~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tI 110 (539)
T COG1123 31 EVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTI 110 (539)
T ss_pred EecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhH
Confidence 37899999999999999999999998876544 455655543322111 1233444444431 11111 11
Q ss_pred ---------------HHHHHHHHHH-------------------------------HhhcCCccEEEEcCcccccccccc
Q 024705 183 ---------------AENLLSVVDT-------------------------------LTKSGSIDVIVVDSVAALIPKCEI 216 (264)
Q Consensus 183 ---------------~ee~~~~i~~-------------------------------~~~~~~~~~vvIDsl~~~~~~~~~ 216 (264)
.++....+.+ ..-..+|++++.|..+...
T Consensus 111 g~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaL----- 185 (539)
T COG1123 111 GDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTAL----- 185 (539)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCcccc-----
Confidence 1111111100 0112467777777666554
Q ss_pred CCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhcC
Q 024705 217 GVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKHF 264 (264)
Q Consensus 217 ~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~~ 264 (264)
+..-+.++.+.|+++. ++.|+++|+|||+..-+...|
T Consensus 186 --------Dvt~q~qIL~llk~l~---~e~g~a~l~ITHDl~Vva~~a 222 (539)
T COG1123 186 --------DVTTQAQILDLLKDLQ---RELGMAVLFITHDLGVVAELA 222 (539)
T ss_pred --------CHHHHHHHHHHHHHHH---HHcCcEEEEEcCCHHHHHHhc
Confidence 2244455677778777 899999999999987776543
No 293
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.73 E-value=7.8e-08 Score=82.91 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=26.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQK 146 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~ 146 (264)
-+.+|+++.|.||||+|||||+..++....+
T Consensus 26 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~ 56 (253)
T PRK14267 26 KIPQNGVFALMGPSGCGKSTLLRTFNRLLEL 56 (253)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCc
Confidence 4789999999999999999999888876543
No 294
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.73 E-value=2.1e-08 Score=85.85 Aligned_cols=72 Identities=21% Similarity=0.239 Sum_probs=44.4
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHH--hhcCCeEEEEecCCCC--CH-HH-HHHcCCCccceeEeCCCCHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEA--QKLGGYCAYLDVENAL--DP-SL-AEAMGIDAENLLIAQPDSAENLLS 188 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~--~~~g~~v~~~~~e~~~--~~-~~-~~~~g~~~~~l~~~~~~~~ee~~~ 188 (264)
-+++|+++.|.||||||||||+..++... .+..+.+ +++..... .. .+ ...+++.+++..+....++.+.+.
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i-~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~ 99 (243)
T TIGR01978 22 TVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTI-LFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLR 99 (243)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceE-EECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHH
Confidence 47899999999999999999998888763 2344544 44433211 11 11 223566666655554455555443
No 295
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.73 E-value=6.2e-08 Score=91.68 Aligned_cols=37 Identities=19% Similarity=0.387 Sum_probs=30.8
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
+++|+++.|.||||||||||+..++....+..+.+.|
T Consensus 276 i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~ 312 (501)
T PRK11288 276 VRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYL 312 (501)
T ss_pred EeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEE
Confidence 6899999999999999999999988766555565544
No 296
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=98.73 E-value=2.9e-08 Score=96.32 Aligned_cols=38 Identities=29% Similarity=0.536 Sum_probs=31.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||||||||+..++....+..+.+.+
T Consensus 38 ~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~ 75 (623)
T PRK10261 38 SLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQC 75 (623)
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEE
Confidence 47899999999999999999999998776555555543
No 297
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.72 E-value=7.2e-08 Score=91.27 Aligned_cols=38 Identities=26% Similarity=0.428 Sum_probs=30.7
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||||||||+..++....+..+.+.|
T Consensus 274 ~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~ 311 (501)
T PRK10762 274 TLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTL 311 (501)
T ss_pred EEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 36899999999999999999998888765555555544
No 298
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.72 E-value=3.6e-08 Score=85.92 Aligned_cols=129 Identities=13% Similarity=0.116 Sum_probs=79.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC-C-----HHHHHHcCCCccceeEeCCCCHHHHH--
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-D-----PSLAEAMGIDAENLLIAQPDSAENLL-- 187 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~-~-----~~~~~~~g~~~~~l~~~~~~~~ee~~-- 187 (264)
-++.|++.+|.|-+|||||||+.++-..+.+..+++++-..+... . ..|.+.+++..|++-+.+..++.+..
T Consensus 50 ~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~f 129 (386)
T COG4175 50 DVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAF 129 (386)
T ss_pred eecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhc
Confidence 377999999999999999998888766665556665543333221 1 13566677777776555544332221
Q ss_pred -------------HHHHHHh-----------------------------hcCCccEEEEcCccccccccccCCCcCCCCc
Q 024705 188 -------------SVVDTLT-----------------------------KSGSIDVIVVDSVAALIPKCEIGVPINGMYS 225 (264)
Q Consensus 188 -------------~~i~~~~-----------------------------~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~ 225 (264)
+.....+ -..++++++.|..- +.++
T Consensus 130 GLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaF-------------SALD 196 (386)
T COG4175 130 GLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAF-------------SALD 196 (386)
T ss_pred ceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCch-------------hhcC
Confidence 1111110 01345566555422 2233
Q ss_pred HHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHh
Q 024705 226 DAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLL 260 (264)
Q Consensus 226 ~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~ 260 (264)
+--..++...|.+|. ++.+.|||+|+|+.++.
T Consensus 197 PLIR~~mQdeLl~Lq---~~l~KTIvFitHDLdEA 228 (386)
T COG4175 197 PLIRTEMQDELLELQ---AKLKKTIVFITHDLDEA 228 (386)
T ss_pred hHHHHHHHHHHHHHH---HHhCCeEEEEecCHHHH
Confidence 344445667777887 77889999999998764
No 299
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.72 E-value=1.2e-07 Score=81.59 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=26.6
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhh
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQK 146 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~ 146 (264)
+.+|++++|.||||+|||||+..++....+
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~ 56 (251)
T PRK14249 27 FPERQITAIIGPSGCGKSTLLRALNRMNDI 56 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCc
Confidence 679999999999999999999988876554
No 300
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.72 E-value=2.6e-07 Score=74.35 Aligned_cols=43 Identities=28% Similarity=0.331 Sum_probs=38.4
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~ 159 (264)
+.||++..|.|++|||||||+.++...+.+..+.+.|...+..
T Consensus 29 l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~ 71 (258)
T COG4107 29 LYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQ 71 (258)
T ss_pred ecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCC
Confidence 6799999999999999999999999999988888988775544
No 301
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.72 E-value=1.5e-07 Score=81.13 Aligned_cols=38 Identities=29% Similarity=0.367 Sum_probs=31.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|++++|.||||+|||||+..++....+..+.+.+
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 62 (253)
T TIGR02323 25 DLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATY 62 (253)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 47899999999999999999998888766555555544
No 302
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.72 E-value=1.9e-07 Score=80.30 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=26.4
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
-+.+|+++.|.||||+|||||+..++....
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (249)
T PRK14253 25 PIPARQVTALIGPSGCGKSTLLRCLNRMND 54 (249)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 477999999999999999999998887554
No 303
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.72 E-value=1.4e-07 Score=82.21 Aligned_cols=29 Identities=17% Similarity=0.326 Sum_probs=25.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
-+.+|+++.|.|+||+|||||+..++...
T Consensus 43 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 43 DIEKHAVTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 36799999999999999999998888754
No 304
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.72 E-value=1.4e-07 Score=81.76 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=26.7
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
-+++|+++.|.||||+|||||+..++....
T Consensus 35 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 64 (260)
T PRK10744 35 DIAKNQVTAFIGPSGCGKSTLLRTFNRMYE 64 (260)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 478999999999999999999999887653
No 305
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.71 E-value=1.4e-07 Score=79.66 Aligned_cols=132 Identities=18% Similarity=0.256 Sum_probs=73.3
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE-------EecCCCCCH---------HHHHHcCCCcccee---
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY-------LDVENALDP---------SLAEAMGIDAENLL--- 176 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~-------~~~e~~~~~---------~~~~~~g~~~~~l~--- 176 (264)
-+++|+.+.|.|+||||||||+..++....+..+++.. ++....+.+ .+..-+|+..+.+.
T Consensus 49 ~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~G~~~~ei~~~~ 128 (249)
T COG1134 49 EIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEKV 128 (249)
T ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHhCccHHHHHHHH
Confidence 47899999999999999999888887777665554331 222111211 11222343322110
Q ss_pred ------------EeCC---CCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHH
Q 024705 177 ------------IAQP---DSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHY 241 (264)
Q Consensus 177 ------------~~~~---~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~ 241 (264)
+..| .+.--.....-......+|+++++|...+.-.. . -+.+ ....+.++
T Consensus 129 ~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~-~-----------F~~K-~~~rl~e~-- 193 (249)
T COG1134 129 DEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDA-A-----------FQEK-CLERLNEL-- 193 (249)
T ss_pred HHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCH-H-----------HHHH-HHHHHHHH--
Confidence 0000 000001111112223458999999998877631 1 1112 12233333
Q ss_pred HHhccCcEEEEEcccchHhhhcC
Q 024705 242 SLCQSHTLIIFLNQVKVLLLKHF 264 (264)
Q Consensus 242 ~l~~~g~tVi~i~h~~~~~~~~~ 264 (264)
.+.+.++|+++|....+.+.|
T Consensus 194 --~~~~~tiv~VSHd~~~I~~~C 214 (249)
T COG1134 194 --VEKNKTIVLVSHDLGAIKQYC 214 (249)
T ss_pred --HHcCCEEEEEECCHHHHHHhc
Confidence 455799999999999988776
No 306
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.71 E-value=1.8e-07 Score=81.04 Aligned_cols=29 Identities=24% Similarity=0.400 Sum_probs=26.2
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHh
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
+++|+++.|.||||+|||||+..++....
T Consensus 35 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 35 IPENEVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 77999999999999999999998887654
No 307
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.71 E-value=1.6e-07 Score=80.65 Aligned_cols=61 Identities=15% Similarity=0.294 Sum_probs=38.5
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHh---hcCCeEEEEecCCCCC---HHHHHHcCCCccceeE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ---KLGGYCAYLDVENALD---PSLAEAMGIDAENLLI 177 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~---~~g~~v~~~~~e~~~~---~~~~~~~g~~~~~l~~ 177 (264)
-+.+|+++.|.||||+|||||+..++.... +..+.+ +++.+.... ....+.+++.+++..+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i-~~~g~~i~~~~~~~~~~~i~~~~q~~~l 90 (246)
T PRK14269 24 QIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLV-EIEGKDVKNQDVVALRKNVGMVFQQPNV 90 (246)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEE-EECCEecccCCHHHHhhhEEEEecCCcc
Confidence 367999999999999999999988887543 234444 444322111 1233456666555433
No 308
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.71 E-value=1.8e-07 Score=80.54 Aligned_cols=62 Identities=19% Similarity=0.236 Sum_probs=40.0
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhh-----cCCeEEEEecCCCC----CH-HHHHHcCCCccceeEe
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQK-----LGGYCAYLDVENAL----DP-SLAEAMGIDAENLLIA 178 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~-----~g~~v~~~~~e~~~----~~-~~~~~~g~~~~~l~~~ 178 (264)
-+++|+++.|.|+||+|||||+..++....+ ..+.+. ++.+... .. ...+.+++.+++..++
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~-~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (251)
T PRK14270 26 PIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVL-LDGKNIYDKDVDVVELRKRVGMVFQKPNPF 97 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEE-ECCEecccccccHHHHHhheEEEecCCCcC
Confidence 3679999999999999999999998876542 344444 4432211 11 2344567666654433
No 309
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.70 E-value=1.5e-07 Score=79.41 Aligned_cols=38 Identities=32% Similarity=0.601 Sum_probs=30.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.+
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 60 (218)
T cd03290 23 RIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHW 60 (218)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEE
Confidence 36799999999999999999998888776555555543
No 310
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.70 E-value=5.8e-08 Score=94.71 Aligned_cols=61 Identities=28% Similarity=0.324 Sum_probs=46.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC-C-HHHHHHcCCCcccee
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-D-PSLAEAMGIDAENLL 176 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~-~-~~~~~~~g~~~~~l~ 176 (264)
-+++|+.+.|.|++|||||||++.+..-..+..|.+.+-+.+... + ...++.+|+.+++..
T Consensus 495 ~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~ 557 (709)
T COG2274 495 EIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPF 557 (709)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccch
Confidence 589999999999999999999998888777777766654433322 2 256777888877544
No 311
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.70 E-value=1e-07 Score=90.35 Aligned_cols=39 Identities=23% Similarity=0.254 Sum_probs=30.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhh-cCCeEEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAYL 154 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~-~g~~v~~~ 154 (264)
-+++|+++.|.||||||||||+..++....+ ..+.+.|.
T Consensus 284 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~ 323 (506)
T PRK13549 284 SLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFID 323 (506)
T ss_pred EEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEEC
Confidence 3789999999999999999999888876542 45555443
No 312
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.69 E-value=1.1e-07 Score=82.39 Aligned_cols=68 Identities=18% Similarity=0.256 Sum_probs=42.0
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhh-----cCCeEEEEecCCCC----CH-HHHHHcCCCccceeEeCCCCHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQK-----LGGYCAYLDVENAL----DP-SLAEAMGIDAENLLIAQPDSAEN 185 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~-----~g~~v~~~~~e~~~----~~-~~~~~~g~~~~~l~~~~~~~~ee 185 (264)
-+++|+++.|.|+||+|||||+..++..... ..+.+. ++..... .. .+.+.+++.+++..++. .++.+
T Consensus 34 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~-~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e 111 (258)
T PRK14268 34 QIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVS-IEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYD 111 (258)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEE-ECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHH
Confidence 4789999999999999999999888875432 244444 4332211 11 23345677666544443 34443
No 313
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.69 E-value=2e-07 Score=81.37 Aligned_cols=30 Identities=17% Similarity=0.322 Sum_probs=26.7
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
-+++|+++.|.|+||+|||||+..++....
T Consensus 46 ~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 46 DIHENEVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 378999999999999999999999888654
No 314
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.69 E-value=9.3e-08 Score=90.91 Aligned_cols=71 Identities=20% Similarity=0.172 Sum_probs=44.0
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEE-ecCC---C-CC--H--HHHHHcCCCccceeEeCCCCHHHHH
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYL-DVEN---A-LD--P--SLAEAMGIDAENLLIAQPDSAENLL 187 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~-~~e~---~-~~--~--~~~~~~g~~~~~l~~~~~~~~ee~~ 187 (264)
+++|+++.|.||||||||||+..++....+..+.+.|- ..+. . .. . .+.+.+|+.+++..+....++.+.+
T Consensus 307 i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l 386 (520)
T TIGR03269 307 VKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNL 386 (520)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHH
Confidence 78999999999999999999988887665555555442 2210 1 11 1 1234577766665444444444433
No 315
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.69 E-value=1.7e-07 Score=80.67 Aligned_cols=30 Identities=30% Similarity=0.375 Sum_probs=26.3
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
-+.+|+++.|.||||+|||||+..++....
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 54 (250)
T PRK14262 25 KIFKNQITAIIGPSGCGKTTLLRSINRMND 54 (250)
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 478999999999999999999988886543
No 316
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.69 E-value=1.9e-07 Score=80.49 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=25.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~ 143 (264)
-+++|+++.|.||||+|||||+..++..
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 27 DFYPNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3779999999999999999999888765
No 317
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.68 E-value=3.8e-07 Score=79.30 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=30.3
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~ 152 (264)
-+++|+++.|.||||+|||||+..++....+..|.+.
T Consensus 46 ~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~ 82 (264)
T PRK13546 46 KAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD 82 (264)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence 3779999999999999999999999887655555443
No 318
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.68 E-value=1.9e-07 Score=80.39 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=26.5
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
-+.+|+++.|.||||+|||||+..++....
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (252)
T PRK14272 26 DVQRGTVNALIGPSGCGKTTFLRAINRMHD 55 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 477999999999999999999988887654
No 319
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.68 E-value=1.6e-07 Score=82.51 Aligned_cols=30 Identities=17% Similarity=0.420 Sum_probs=26.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
-+.+|++++|.||||+|||||+..++....
T Consensus 61 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 90 (285)
T PRK14254 61 DIPENQVTAMIGPSGCGKSTFLRCINRMND 90 (285)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 377999999999999999999888877653
No 320
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.67 E-value=2.3e-07 Score=78.56 Aligned_cols=38 Identities=26% Similarity=0.342 Sum_probs=30.7
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.+
T Consensus 36 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 73 (226)
T cd03248 36 TLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLL 73 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEE
Confidence 47899999999999999999999888766555555433
No 321
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.67 E-value=2.3e-07 Score=80.38 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=28.0
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcC
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLG 148 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g 148 (264)
-+.+|+++.|.|+||+|||||+..++....+..
T Consensus 32 ~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~ 64 (257)
T PRK14246 32 KIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYD 64 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 367999999999999999999998887665444
No 322
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=98.67 E-value=9.8e-08 Score=101.89 Aligned_cols=72 Identities=11% Similarity=0.140 Sum_probs=46.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH-HHHHHcCCCccceeEeCCCCHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP-SLAEAMGIDAENLLIAQPDSAENLL 187 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~-~~~~~~g~~~~~l~~~~~~~~ee~~ 187 (264)
.+.+|+++.|.||||+|||||+..++....+..|.+.+...+..... ...+.+|+.+++..+....++.+.+
T Consensus 952 ~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L 1024 (2272)
T TIGR01257 952 TFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHI 1024 (2272)
T ss_pred EEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHH
Confidence 47899999999999999999888887776666666544332222111 2334577777765444444544433
No 323
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.67 E-value=2.1e-07 Score=81.29 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=25.1
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
+.+|+++.|.||||+|||||+..++...
T Consensus 43 i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~ 70 (274)
T PRK14265 43 IPAKKIIAFIGPSGCGKSTLLRCFNRMN 70 (274)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 6799999999999999999998887654
No 324
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.67 E-value=3.9e-07 Score=78.47 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=25.0
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~ 143 (264)
-+++|+++.|.||||+|||||+..++..
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14245 25 EIEEKSVVAFIGPSGCGKSTFLRLFNRM 52 (250)
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhhh
Confidence 3779999999999999999999888764
No 325
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.67 E-value=3e-07 Score=76.63 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=24.3
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
+..|++++|.||||+|||||+..++...
T Consensus 22 l~~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 22 MEKKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred EcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 3457999999999999999999998755
No 326
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.67 E-value=2e-07 Score=78.57 Aligned_cols=129 Identities=14% Similarity=0.104 Sum_probs=72.7
Q ss_pred CCCC-CcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCC-ccceeEeCCCCHHHHHHHHHHH
Q 024705 116 GLPK-GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGID-AENLLIAQPDSAENLLSVVDTL 193 (264)
Q Consensus 116 Gl~~-G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~-~~~l~~~~~~~~ee~~~~i~~~ 193 (264)
.+++ ...++|+|+||+||||++..+. ++.++++.+...... .|.. .+-+.+..+.+.+.+.+.+..+
T Consensus 7 ~~~~~~~~~liyG~~G~GKtt~a~~~~-------~~~~~~~~d~~~~~l----~g~~~~~v~~~d~~~~~~~~~d~l~~~ 75 (220)
T TIGR01618 7 NIKRIPNMYLIYGKPGTGKTSTIKYLP-------GKTLVLSFDMSSKVL----IGDENVDIADHDDMPPIQAMVEFYVMQ 75 (220)
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHhcC-------CCCEEEeccccchhc----cCCCCCceeecCCCCCHHHHHHHHHHH
Confidence 4444 5779999999999999988762 457777777653221 1111 1111122344556666655433
Q ss_pred h-hcCCccEEEEcCcccccccc----ccCCCcC--CCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccch
Q 024705 194 T-KSGSIDVIVVDSVAALIPKC----EIGVPIN--GMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKV 258 (264)
Q Consensus 194 ~-~~~~~~~vvIDsl~~~~~~~----~~~~~~~--~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~ 258 (264)
- ...+++.||||++..+.... ...+..+ ....... +...+..+...+.+.|.+||+++|...
T Consensus 76 ~~~~~~ydtVVIDsI~~l~~~~~~~~~r~~k~~~~~~~~yg~---~~~~fl~~l~~L~~~g~nII~tAhe~~ 144 (220)
T TIGR01618 76 NIQAVKYDNIVIDNISALQNLWLENIGRAAKNGQPELQHYQK---LDLWFLDLLTVLKESNKNIYATAWELT 144 (220)
T ss_pred HhccccCCEEEEecHHHHHHHHHHHHhhhcCCCCcccccHHH---HHHHHHHHHHHHHhCCCcEEEEEeecc
Confidence 2 12578999999999876300 1111110 1111111 223333344444678999999999854
No 327
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.67 E-value=2.1e-07 Score=81.41 Aligned_cols=59 Identities=22% Similarity=0.315 Sum_probs=40.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC--C-HHHHHHcCCCcccee
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL--D-PSLAEAMGIDAENLL 176 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~--~-~~~~~~~g~~~~~l~ 176 (264)
-+++|+++.|.||+|+|||||+..++.... ..+. ++++..... . ..+.+.+++.+++..
T Consensus 26 ~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~-I~i~g~~i~~~~~~~lr~~i~~v~q~~~ 87 (275)
T cd03289 26 SISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGD-IQIDGVSWNSVPLQKWRKAFGVIPQKVF 87 (275)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcE-EEECCEEhhhCCHHHHhhhEEEECCCcc
Confidence 377999999999999999999988887765 4544 455543221 1 134455676665543
No 328
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.66 E-value=2.3e-07 Score=80.94 Aligned_cols=30 Identities=27% Similarity=0.438 Sum_probs=26.4
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
-+++|+++.|.||||+|||||+..++....
T Consensus 47 ~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~ 76 (272)
T PRK14236 47 RIPKNRVTAFIGPSGCGKSTLLRCFNRMND 76 (272)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 478999999999999999999988887543
No 329
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.66 E-value=2.3e-07 Score=79.86 Aligned_cols=30 Identities=13% Similarity=0.278 Sum_probs=26.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
-+.+|+++.|.|+||+|||||+..++....
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14251 26 DFEEKELTALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhccc
Confidence 378999999999999999999988887654
No 330
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.66 E-value=3.7e-07 Score=79.07 Aligned_cols=30 Identities=17% Similarity=0.367 Sum_probs=26.5
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
-+.+|+++.|.|+||+|||||+..++....
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~ 58 (259)
T PRK14260 29 DIYRNKVTAIIGPSGCGKSTFIKTLNRISE 58 (259)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 377999999999999999999988887654
No 331
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.66 E-value=3.4e-07 Score=79.59 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=25.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
-+++|+++.|.|+||+|||||+..++...
T Consensus 32 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 60 (264)
T PRK14243 32 DIPKNQITAFIGPSGCGKSTILRCFNRLN 60 (264)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 47799999999999999999999888654
No 332
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.66 E-value=1.8e-07 Score=81.50 Aligned_cols=62 Identities=19% Similarity=0.260 Sum_probs=40.3
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhh-----cCCeEEEEecCCCC----CH-HHHHHcCCCccceeEe
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQK-----LGGYCAYLDVENAL----DP-SLAEAMGIDAENLLIA 178 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~-----~g~~v~~~~~e~~~----~~-~~~~~~g~~~~~l~~~ 178 (264)
-+++|+++.|.||||+|||||+..++....+ ..|.+ +++.+... .. .+...+++.++...++
T Consensus 41 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I-~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 112 (267)
T PRK14235 41 DIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKI-TLDGEDIYDPRLDVVELRARVGMVFQKPNPF 112 (267)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEE-EECCEECcccccchHHHhhceEEEecCCCCC
Confidence 4789999999999999999999888876643 34554 44432211 11 2334566666654433
No 333
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.66 E-value=1.4e-08 Score=88.79 Aligned_cols=30 Identities=37% Similarity=0.509 Sum_probs=27.5
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
.+.+|+++.|+|++|||||+++..++..+-
T Consensus 27 ~i~~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 27 ELKKGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence 478999999999999999999999998775
No 334
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.65 E-value=3e-07 Score=80.03 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=26.4
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
-+.+|+++.|.||||+|||||+..++....
T Consensus 42 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 71 (267)
T PRK14237 42 QFEKNKITALIGPSGSGKSTYLRSLNRMND 71 (267)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 477999999999999999999998887653
No 335
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.65 E-value=3.1e-07 Score=79.12 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=26.3
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
-+.+|+++.|.|+||+|||||+..++....
T Consensus 27 ~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~ 56 (251)
T PRK14244 27 DIYKREVTAFIGPSGCGKSTFLRCFNRMND 56 (251)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 377999999999999999999998887653
No 336
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.65 E-value=1.8e-07 Score=89.21 Aligned_cols=37 Identities=24% Similarity=0.382 Sum_probs=29.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||||||||+..++... +..|.+.|
T Consensus 308 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~ 344 (529)
T PRK15134 308 TLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWF 344 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEE
Confidence 37799999999999999999998888765 44555443
No 337
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.65 E-value=1.2e-07 Score=90.18 Aligned_cols=62 Identities=29% Similarity=0.380 Sum_probs=42.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC--CCHHHHHHcCCCccceeEe
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA--LDPSLAEAMGIDAENLLIA 178 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~--~~~~~~~~~g~~~~~l~~~ 178 (264)
-+++|+.+.|.||+|||||||+..++....+..|.+. ++...- ....+.+.+++.+|+..++
T Consensus 357 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~-i~g~~i~~~~~~lr~~i~~V~Q~~~lF 420 (529)
T TIGR02868 357 DLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVT-LDGVSVSSLQDELRRRISVFAQDAHLF 420 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE-ECCEEhhhHHHHHHhheEEEccCcccc
Confidence 3789999999999999999999888876666555554 443111 1224455677776655433
No 338
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.65 E-value=1.7e-07 Score=81.06 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=26.5
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
-+++|+++.|.||||||||||+..++....
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~ 55 (258)
T PRK14241 26 NIEPRSVTAFIGPSGCGKSTVLRTLNRMHE 55 (258)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 478999999999999999999988887654
No 339
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.64 E-value=2.2e-07 Score=89.47 Aligned_cols=63 Identities=22% Similarity=0.283 Sum_probs=44.5
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC-CC-HHHHHHcCCCccceeEe
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA-LD-PSLAEAMGIDAENLLIA 178 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~-~~-~~~~~~~g~~~~~l~~~ 178 (264)
-+++|+.++|.|++|||||||+..++....+..|.+.+-..+.. .. ..+.+.+++.+|+..+.
T Consensus 365 ~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf 429 (582)
T PRK11176 365 KIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLF 429 (582)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceee
Confidence 37899999999999999999999998877776666544322211 11 24566688877765443
No 340
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2e-07 Score=75.67 Aligned_cols=39 Identities=26% Similarity=0.288 Sum_probs=33.3
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEe
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~ 155 (264)
+.+|+.+.|.||||+|||||++.++.-+.+..+.|.|-+
T Consensus 25 l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~ 63 (209)
T COG4133 25 LNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQG 63 (209)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecC
Confidence 569999999999999999999998888877777765543
No 341
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=3.1e-07 Score=80.42 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=26.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
-+++|+++.|.||||+|||||+..++....
T Consensus 43 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 72 (276)
T PRK14271 43 GFPARAVTSLMGPTGSGKTTFLRTLNRMND 72 (276)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 377999999999999999999999887654
No 342
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=3.9e-07 Score=78.41 Aligned_cols=29 Identities=21% Similarity=0.432 Sum_probs=25.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
-+++|+++.|.||||+|||||+..++...
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (250)
T PRK14266 25 DIPKNSVTALIGPSGCGKSTFIRTLNRMN 53 (250)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 47799999999999999999999888754
No 343
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.64 E-value=2.2e-07 Score=76.01 Aligned_cols=115 Identities=23% Similarity=0.277 Sum_probs=65.3
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~ 195 (264)
-++.+..++|.||+|+|||+|+..++..+...|.+|.|+.... ....+... ......++.. ..+
T Consensus 43 ~~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~-----L~~~l~~~------~~~~~~~~~~---~~l-- 106 (178)
T PF01695_consen 43 FIENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASD-----LLDELKQS------RSDGSYEELL---KRL-- 106 (178)
T ss_dssp S-SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHH-----HHHHHHCC------HCCTTHCHHH---HHH--
T ss_pred CcccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCc-----eecccccc------ccccchhhhc---Ccc--
Confidence 4567888999999999999999999999999999999998543 22212111 0112233333 333
Q ss_pred cCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 196 SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 196 ~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
.+++++|||.+...... + ... ..+.++.....+.+.|||.+|...+++.+.
T Consensus 107 -~~~dlLilDDlG~~~~~-~-----------~~~----~~l~~ii~~R~~~~~tIiTSN~~~~~l~~~ 157 (178)
T PF01695_consen 107 -KRVDLLILDDLGYEPLS-E-----------WEA----ELLFEIIDERYERKPTIITSNLSPSELEEV 157 (178)
T ss_dssp -HTSSCEEEETCTSS----H-----------HHH----HCTHHHHHHHHHT-EEEEEESS-HHHHHT-
T ss_pred -ccccEecccccceeeec-c-----------ccc----ccchhhhhHhhcccCeEeeCCCchhhHhhc
Confidence 37899999998754321 1 111 233444433334456777777666666543
No 344
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.64 E-value=3.1e-07 Score=80.81 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=25.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
-+.+|+++.|.||||+|||||+..++...
T Consensus 61 ~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 89 (286)
T PRK14275 61 DILSKYVTAIIGPSGCGKSTFLRAINRMN 89 (286)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 47899999999999999999998888753
No 345
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.63 E-value=1.9e-07 Score=90.01 Aligned_cols=59 Identities=19% Similarity=0.230 Sum_probs=42.5
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCC-C--CCHHHHHHcCCCccceeE
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN-A--LDPSLAEAMGIDAENLLI 177 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~-~--~~~~~~~~~g~~~~~l~~ 177 (264)
+++|+.+.|.||+|||||||+..++... +..|.+. ++... . ....+.+.+++.+|+..+
T Consensus 373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~-i~g~~i~~~~~~~lr~~i~~v~Q~~~L 434 (588)
T PRK11174 373 LPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLK-INGIELRELDPESWRKHLSWVGQNPQL 434 (588)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEE-ECCEecccCCHHHHHhheEEecCCCcC
Confidence 7899999999999999999999888877 6665554 44321 1 112456678887776543
No 346
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.63 E-value=2.6e-07 Score=70.86 Aligned_cols=115 Identities=21% Similarity=0.234 Sum_probs=66.6
Q ss_pred EEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhcCCccEE
Q 024705 123 VEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSIDVI 202 (264)
Q Consensus 123 ~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~~~~~v 202 (264)
++|.||||+|||+++..++..+ +..++.++....... ........+...+........+.++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~vl 62 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPCVL 62 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhc---ccccccccccccccc---------------cccccccccccccccccccccceee
Confidence 5799999999999999998865 566766764321100 0011223333444443222238999
Q ss_pred EEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhc-cCcEEEEEcccchHhh
Q 024705 203 VVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQ-SHTLIIFLNQVKVLLL 261 (264)
Q Consensus 203 vIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~-~g~tVi~i~h~~~~~~ 261 (264)
+||.+..+.+.. . ........+.+...+..+...... .++.||++++..+.+.
T Consensus 63 ~iDe~d~l~~~~--~----~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~ 116 (132)
T PF00004_consen 63 FIDEIDKLFPKS--Q----PSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKID 116 (132)
T ss_dssp EEETGGGTSHHC--S----TSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSC
T ss_pred eeccchhccccc--c----cccccccccccceeeecccccccccccceeEEeeCChhhCC
Confidence 999999998632 1 112223333333444444322222 4588998888766654
No 347
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.63 E-value=2.8e-07 Score=79.18 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=30.4
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHH--hhcCCeEEEEec
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEA--QKLGGYCAYLDV 156 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~--~~~g~~v~~~~~ 156 (264)
-+.+|+++.|.||||+|||||+..++... .+..+.+ +++.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i-~~~g 64 (248)
T PRK09580 23 EVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV-EFKG 64 (248)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEE-EECC
Confidence 47899999999999999999998888764 2334444 4443
No 348
>PRK09183 transposase/IS protein; Provisional
Probab=98.63 E-value=7.1e-07 Score=77.40 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=37.4
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecC
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e 157 (264)
-+++|+.++|+||||+|||+|+..++..+...|.+|.|++..
T Consensus 98 ~i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~ 139 (259)
T PRK09183 98 FIERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAA 139 (259)
T ss_pred chhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHH
Confidence 378899999999999999999999988888889899998743
No 349
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.63 E-value=2.8e-07 Score=79.46 Aligned_cols=28 Identities=29% Similarity=0.500 Sum_probs=25.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~ 143 (264)
-+++|++++|.||||+|||||+..++..
T Consensus 28 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14261 28 SIPKNRVTALIGPSGCGKSTLLRCFNRM 55 (253)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3779999999999999999998888764
No 350
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.62 E-value=2.3e-07 Score=80.56 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=26.5
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
-+++|+++.|.|+||+|||||+..++....
T Consensus 30 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (261)
T PRK14263 30 PIRKNEITGFIGPSGCGKSTVLRSLNRMND 59 (261)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcccc
Confidence 478999999999999999999988877654
No 351
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.62 E-value=3.3e-07 Score=86.14 Aligned_cols=37 Identities=32% Similarity=0.427 Sum_probs=30.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~ 152 (264)
-+++|++++|.||||+|||||+..++....+..|.+.
T Consensus 46 sI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~ 82 (549)
T PRK13545 46 EVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVD 82 (549)
T ss_pred EEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 4789999999999999999999998886655555544
No 352
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.61 E-value=3.8e-07 Score=86.27 Aligned_cols=46 Identities=30% Similarity=0.383 Sum_probs=36.3
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcC--------CeEEEEecCCCCC
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLG--------GYCAYLDVENALD 161 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g--------~~v~~~~~e~~~~ 161 (264)
.+.+|+.++|+|+||+|||||+..++....+.. .++.|+..+....
T Consensus 25 ~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~ 78 (530)
T COG0488 25 TLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLD 78 (530)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcC
Confidence 478999999999999999999999988765432 3577777665544
No 353
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.61 E-value=2.1e-07 Score=80.17 Aligned_cols=29 Identities=21% Similarity=0.417 Sum_probs=26.0
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
-+++|+++.|.|+||||||||+..++...
T Consensus 26 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 26 DFPENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 37799999999999999999998888765
No 354
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.61 E-value=4.6e-07 Score=78.77 Aligned_cols=29 Identities=14% Similarity=0.268 Sum_probs=25.9
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHh
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
+.+|+++.|.|+||+|||||+..++....
T Consensus 39 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 67 (265)
T PRK14252 39 VHEKQVTALIGPSGCGKSTFLRCFNRMHD 67 (265)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcccC
Confidence 77999999999999999999988877554
No 355
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.61 E-value=1.5e-07 Score=89.11 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=29.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhh--cCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQK--LGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~--~g~~v~~ 153 (264)
-+++|+++.|.||||||||||+..++....+ ..+.+.|
T Consensus 23 ~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~ 62 (500)
T TIGR02633 23 EVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYW 62 (500)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEE
Confidence 4789999999999999999998888875533 2444433
No 356
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.61 E-value=3.7e-07 Score=81.04 Aligned_cols=29 Identities=17% Similarity=0.376 Sum_probs=25.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
-+.+|+++.|.|+||+|||||+..++...
T Consensus 67 ~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~ 95 (305)
T PRK14264 67 DIPEKSVTALIGPSGCGKSTFLRCLNRMN 95 (305)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 36799999999999999999998888755
No 357
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.61 E-value=5.9e-07 Score=76.78 Aligned_cols=76 Identities=17% Similarity=0.277 Sum_probs=51.6
Q ss_pred HHHHhcCCccccccccccCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEe
Q 024705 76 QLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (264)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~ 155 (264)
|+..+++.....+..++....+...+ ..+..+.. .+.+..++|+||+|+|||+|+..++..+...|.++.|++
T Consensus 8 Ql~l~~~~~~~~~fd~f~~~~n~~a~----~~l~~~~~---~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~ 80 (235)
T PRK08084 8 QLSLPLYLPDDETFASFYPGDNDSLL----AALQNALR---QEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP 80 (235)
T ss_pred ceecCCCCCCcCCccccccCccHHHH----HHHHHHHh---CCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 56666665555555555533222222 33555543 123457899999999999999999998888889999998
Q ss_pred cCC
Q 024705 156 VEN 158 (264)
Q Consensus 156 ~e~ 158 (264)
.+.
T Consensus 81 ~~~ 83 (235)
T PRK08084 81 LDK 83 (235)
T ss_pred HHH
Confidence 653
No 358
>PRK08181 transposase; Validated
Probab=98.61 E-value=6.7e-07 Score=77.80 Aligned_cols=78 Identities=18% Similarity=0.268 Sum_probs=53.2
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhc
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKS 196 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~ 196 (264)
+..+..++|+||+|+|||+|+..++..++..|.+|+|++..+-....... . ...+.++.+ ..+
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a-----~------~~~~~~~~l---~~l--- 165 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVA-----R------RELQLESAI---AKL--- 165 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHH-----H------hCCcHHHHH---HHH---
Confidence 45778899999999999999999999999899999998853311111000 0 011223332 222
Q ss_pred CCccEEEEcCccccc
Q 024705 197 GSIDVIVVDSVAALI 211 (264)
Q Consensus 197 ~~~~~vvIDsl~~~~ 211 (264)
.+++++|||.+....
T Consensus 166 ~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 166 DKFDLLILDDLAYVT 180 (269)
T ss_pred hcCCEEEEecccccc
Confidence 478999999997654
No 359
>PRK06893 DNA replication initiation factor; Validated
Probab=98.60 E-value=5.3e-07 Score=76.78 Aligned_cols=37 Identities=22% Similarity=0.256 Sum_probs=33.3
Q ss_pred cEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecC
Q 024705 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e 157 (264)
..++|+||||+|||+|+..++..+...+.++.|++.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 4678999999999999999999998888899998864
No 360
>PRK13409 putative ATPase RIL; Provisional
Probab=98.60 E-value=1.9e-07 Score=89.90 Aligned_cols=36 Identities=25% Similarity=0.218 Sum_probs=29.9
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEE
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~ 152 (264)
+++|+++.|.||||+|||||+..++....+..|.+.
T Consensus 96 i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~ 131 (590)
T PRK13409 96 PKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYE 131 (590)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccCCCcccc
Confidence 679999999999999999998888876665555553
No 361
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.59 E-value=4.7e-08 Score=92.71 Aligned_cols=39 Identities=23% Similarity=0.275 Sum_probs=31.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYL 154 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~ 154 (264)
-+++|+++.|.||||||||||+..++....+..+.+.+.
T Consensus 285 ~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~ 323 (510)
T PRK15439 285 EVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLN 323 (510)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEEC
Confidence 368999999999999999999988887655555555443
No 362
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.59 E-value=5.9e-07 Score=77.71 Aligned_cols=38 Identities=29% Similarity=0.442 Sum_probs=30.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|++++|.|+||+|||||+..++....+..+.+.+
T Consensus 43 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i 80 (257)
T cd03288 43 YIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVI 80 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEE
Confidence 37799999999999999999999988866555555443
No 363
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=98.59 E-value=1.6e-07 Score=76.86 Aligned_cols=76 Identities=16% Similarity=0.130 Sum_probs=48.1
Q ss_pred CcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEe-cCCCCCH-HHHHH--cCCCccceeEeC
Q 024705 104 GSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD-VENALDP-SLAEA--MGIDAENLLIAQ 179 (264)
Q Consensus 104 G~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~-~e~~~~~-~~~~~--~g~~~~~l~~~~ 179 (264)
|+.+|..+-= -+.+|++-+|+||||+||||++-.+.....+..++|.|-+ .+...-+ .+..+ +|-..|...++.
T Consensus 17 GF~Aln~ls~--~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe 94 (249)
T COG4674 17 GFKALNDLSF--SVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFE 94 (249)
T ss_pred ceeeeeeeEE--EecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehh
Confidence 4555555532 5789999999999999999998888887766666665544 3333222 23333 444455444444
Q ss_pred CC
Q 024705 180 PD 181 (264)
Q Consensus 180 ~~ 181 (264)
..
T Consensus 95 ~l 96 (249)
T COG4674 95 NL 96 (249)
T ss_pred hc
Confidence 33
No 364
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.59 E-value=9.5e-07 Score=73.41 Aligned_cols=88 Identities=14% Similarity=0.246 Sum_probs=59.0
Q ss_pred cEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH------HHHHHcCCCccceeEeCCCCHHHHH-HHHHHH
Q 024705 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP------SLAEAMGIDAENLLIAQPDSAENLL-SVVDTL 193 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~------~~~~~~g~~~~~l~~~~~~~~ee~~-~~i~~~ 193 (264)
.++.++||+|+||||.+..+++....++.+|.+++.|..... .+++.+|++.-.. ....+..++. +.++..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~--~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVA--RTESDPAEIAREALEKF 79 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEES--STTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchh--hcchhhHHHHHHHHHHH
Confidence 578999999999999999999999988999999998865442 3566677653221 1122333444 334433
Q ss_pred hhcCCccEEEEcCccccc
Q 024705 194 TKSGSIDVIVVDSVAALI 211 (264)
Q Consensus 194 ~~~~~~~~vvIDsl~~~~ 211 (264)
...+.++|+||+.....
T Consensus 80 -~~~~~D~vlIDT~Gr~~ 96 (196)
T PF00448_consen 80 -RKKGYDLVLIDTAGRSP 96 (196)
T ss_dssp -HHTTSSEEEEEE-SSSS
T ss_pred -hhcCCCEEEEecCCcch
Confidence 44679999999866443
No 365
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.59 E-value=3.7e-07 Score=87.27 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=41.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC--CCHHHHHHcCCCccceeE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA--LDPSLAEAMGIDAENLLI 177 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~--~~~~~~~~~g~~~~~l~~ 177 (264)
-+++|+.+.|.||+|||||||+..++....+..|.+.+-..+.. ....+.+.+++.+++..+
T Consensus 340 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~l 403 (544)
T TIGR01842 340 RLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVEL 403 (544)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCccc
Confidence 37899999999999999999999998877666665544222111 111344556766665443
No 366
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.58 E-value=6.7e-07 Score=84.66 Aligned_cols=129 Identities=14% Similarity=0.149 Sum_probs=80.0
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhc--------CCeEEEEecCCCCC---H---H----------------HH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKL--------GGYCAYLDVENALD---P---S----------------LA 165 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~--------g~~v~~~~~e~~~~---~---~----------------~~ 165 (264)
.+.+|+-+.|+||||+|||||+..++....+. +-++.||+.+...- . . ..
T Consensus 344 ~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L 423 (530)
T COG0488 344 RIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYL 423 (530)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHH
Confidence 57899999999999999999999987766432 24477887655211 0 0 11
Q ss_pred HHcCCCccce-eEeCCCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHh
Q 024705 166 EAMGIDAENL-LIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLC 244 (264)
Q Consensus 166 ~~~g~~~~~l-~~~~~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~ 244 (264)
.++++..+.. ..+...+.-|-....-..+--.++.++++|..++-+.. ..+..|...+.
T Consensus 424 ~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi--------------------~s~~aLe~aL~ 483 (530)
T COG0488 424 GRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDI--------------------ESLEALEEALL 483 (530)
T ss_pred HHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCH--------------------HHHHHHHHHHH
Confidence 1223332221 11112233333333333333468999999998887631 12333344448
Q ss_pred ccCcEEEEEcccchHhhhcC
Q 024705 245 QSHTLIIFLNQVKVLLLKHF 264 (264)
Q Consensus 245 ~~g~tVi~i~h~~~~~~~~~ 264 (264)
++.-|||+|||++..++..|
T Consensus 484 ~f~Gtvl~VSHDr~Fl~~va 503 (530)
T COG0488 484 DFEGTVLLVSHDRYFLDRVA 503 (530)
T ss_pred hCCCeEEEEeCCHHHHHhhc
Confidence 88999999999999887643
No 367
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=98.58 E-value=7.7e-08 Score=91.66 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=26.7
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
-+.+|+++.|.||||||||||+..++....
T Consensus 31 ~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~ 60 (529)
T PRK15134 31 QIEAGETLALVGESGSGKSVTALSILRLLP 60 (529)
T ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 477999999999999999999988887664
No 368
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.58 E-value=3e-07 Score=87.54 Aligned_cols=63 Identities=22% Similarity=0.249 Sum_probs=43.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC-CC-HHHHHHcCCCccceeEe
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA-LD-PSLAEAMGIDAENLLIA 178 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~-~~-~~~~~~~g~~~~~l~~~ 178 (264)
-+++|+.+.|.||+|+|||||+..++....+..|.+.+-+.+.. .. ..+.+.+++.+|+..++
T Consensus 344 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf 408 (529)
T TIGR02857 344 TVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLF 408 (529)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCccc
Confidence 47899999999999999999998888877666666544332221 11 24556677777665443
No 369
>PRK06526 transposase; Provisional
Probab=98.57 E-value=2.7e-07 Score=79.78 Aligned_cols=41 Identities=22% Similarity=0.195 Sum_probs=36.0
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEec
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~ 156 (264)
-+..+..++|+||||+|||+++..++..++..|.+|.|++.
T Consensus 94 fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~ 134 (254)
T PRK06526 94 FVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATA 134 (254)
T ss_pred hhhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhH
Confidence 35677889999999999999999999999988988888654
No 370
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.57 E-value=7.6e-07 Score=68.72 Aligned_cols=79 Identities=24% Similarity=0.370 Sum_probs=51.5
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHH-HcCCCccceeEeCCCCHHHHHHHHHHHhhcC
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAE-AMGIDAENLLIAQPDSAENLLSVVDTLTKSG 197 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~-~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~ 197 (264)
.+..++|+||+|+|||+++..++..+...+..+++++........... ..+.. ............
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~ 83 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF--------------LVRLLFELAEKA 83 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhh--------------hHhHHHHhhccC
Confidence 467899999999999999999999887777888888765433321110 00000 111112222335
Q ss_pred CccEEEEcCccccc
Q 024705 198 SIDVIVVDSVAALI 211 (264)
Q Consensus 198 ~~~~vvIDsl~~~~ 211 (264)
+..++++|.+..+.
T Consensus 84 ~~~~lilDe~~~~~ 97 (151)
T cd00009 84 KPGVLFIDEIDSLS 97 (151)
T ss_pred CCeEEEEeChhhhh
Confidence 67899999998773
No 371
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.56 E-value=4.5e-07 Score=85.60 Aligned_cols=38 Identities=18% Similarity=0.279 Sum_probs=29.5
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhh-cCCeEEEE
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAYL 154 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~-~g~~v~~~ 154 (264)
+++|+++.|.||||||||||+..++..... ..+.+.|.
T Consensus 283 i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~ 321 (490)
T PRK10938 283 VNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLF 321 (490)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEe
Confidence 789999999999999999999998874322 24555443
No 372
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.56 E-value=6.4e-07 Score=77.17 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=25.5
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
-+.+|+++.|.||||+|||||+..++...
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (252)
T PRK14255 27 DFNQNEITALIGPSGCGKSTYLRTLNRMN 55 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 37799999999999999999988887743
No 373
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.56 E-value=4.6e-07 Score=78.00 Aligned_cols=38 Identities=32% Similarity=0.470 Sum_probs=29.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHH--hhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEA--QKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~--~~~g~~v~~ 153 (264)
-+.+|+++.|.|+||+|||||+..++... .+..+.+.+
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~ 68 (252)
T CHL00131 29 SINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILF 68 (252)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEE
Confidence 47899999999999999999998887742 233444433
No 374
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.56 E-value=3.7e-07 Score=88.10 Aligned_cols=59 Identities=20% Similarity=0.228 Sum_probs=41.1
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCC-C--CCHHHHHHcCCCcccee
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN-A--LDPSLAEAMGIDAENLL 176 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~-~--~~~~~~~~~g~~~~~l~ 176 (264)
+++|+.++|.|++|+|||||+..++....+..|.+. ++... . ....+.+.+++.+|+..
T Consensus 358 i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~-i~g~~i~~~~~~~~r~~i~~v~Q~~~ 419 (588)
T PRK13657 358 AKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRIL-IDGTDIRTVTRASLRRNIAVVFQDAG 419 (588)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE-ECCEEhhhCCHHHHHhheEEEecCcc
Confidence 679999999999999999999888877766555544 44321 1 11245566777666543
No 375
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.55 E-value=3.3e-07 Score=87.33 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=29.3
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v 151 (264)
-+.+|+++.|.||||||||||+..++....+..+.+
T Consensus 23 ~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i 58 (530)
T PRK15064 23 KFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNV 58 (530)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 478999999999999999999998887665444433
No 376
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.55 E-value=1.6e-07 Score=88.80 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=29.7
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhh-cCCeEEE
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAY 153 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~-~g~~v~~ 153 (264)
+.+|+++.|.||||||||||+..++....+ ..+.+.+
T Consensus 283 i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~ 320 (500)
T TIGR02633 283 LRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFI 320 (500)
T ss_pred EeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEE
Confidence 789999999999999999998888876543 3555544
No 377
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.55 E-value=4.5e-07 Score=87.16 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=42.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC--CCHHHHHHcCCCccceeEe
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA--LDPSLAEAMGIDAENLLIA 178 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~--~~~~~~~~~g~~~~~l~~~ 178 (264)
-+++|+.+.|.||+|||||||+..++....+..|.+.+-..+.. ....+.+.+++.+++..++
T Consensus 337 ~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf 401 (569)
T PRK10789 337 TLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLF 401 (569)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeec
Confidence 37899999999999999999998888877666666654322211 1123455567666655443
No 378
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.55 E-value=6.2e-07 Score=78.73 Aligned_cols=82 Identities=20% Similarity=0.307 Sum_probs=58.9
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhhc-C-CeEEEEecCCCCCH------HHHHHcCCCccceeEeCCCCHHHHHHH
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQKL-G-GYCAYLDVENALDP------SLAEAMGIDAENLLIAQPDSAENLLSV 189 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~-g-~~v~~~~~e~~~~~------~~~~~~g~~~~~l~~~~~~~~ee~~~~ 189 (264)
+.|.++.|+||+|+||||++..++..+... | .+|.+++.|..... .+++.+|++... ..+..++...
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~-----~~~~~~l~~~ 266 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKV-----ARDPKELRKA 266 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceec-----cCCHHHHHHH
Confidence 467899999999999999999999988876 4 79999998864321 234445654322 2345566555
Q ss_pred HHHHhhcCCccEEEEcCc
Q 024705 190 VDTLTKSGSIDVIVVDSV 207 (264)
Q Consensus 190 i~~~~~~~~~~~vvIDsl 207 (264)
+..+ .+.++|+||..
T Consensus 267 l~~~---~~~d~vliDt~ 281 (282)
T TIGR03499 267 LDRL---RDKDLILIDTA 281 (282)
T ss_pred HHHc---cCCCEEEEeCC
Confidence 5554 45899999974
No 379
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.54 E-value=4.5e-07 Score=87.53 Aligned_cols=63 Identities=17% Similarity=0.202 Sum_probs=44.7
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC--CHHHHHHcCCCccceeEe
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL--DPSLAEAMGIDAENLLIA 178 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~--~~~~~~~~g~~~~~l~~~ 178 (264)
-+++|+.++|.|++|||||||+..++....+.+|.+.+-+.+... ...+.+.+++.+|+..++
T Consensus 363 ~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF 427 (592)
T PRK10790 363 SVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVL 427 (592)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccc
Confidence 378999999999999999999999888777766665443322221 124566777777765444
No 380
>PLN03211 ABC transporter G-25; Provisional
Probab=98.54 E-value=3.6e-07 Score=89.14 Aligned_cols=72 Identities=18% Similarity=0.229 Sum_probs=44.7
Q ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHHHHhhc--CCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHH
Q 024705 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKL--GGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLS 188 (264)
Q Consensus 115 gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~--g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~ 188 (264)
+-+++|+++.|.||||+|||||+..++....+. .|.+ +++.... .....+.+|+.+|+..+....++.|.+.
T Consensus 89 ~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I-~inG~~~-~~~~~~~i~yv~Q~~~l~~~lTV~E~l~ 162 (659)
T PLN03211 89 GMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTI-LANNRKP-TKQILKRTGFVTQDDILYPHLTVRETLV 162 (659)
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEE-EECCEEC-chhhccceEEECcccccCCcCCHHHHHH
Confidence 468999999999999999999988887755432 3444 4443221 1222334666666554444445554443
No 381
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=98.53 E-value=5.9e-07 Score=86.42 Aligned_cols=61 Identities=21% Similarity=0.307 Sum_probs=43.0
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC-CC-HHHHHHcCCCccceeE
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA-LD-PSLAEAMGIDAENLLI 177 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~-~~-~~~~~~~g~~~~~l~~ 177 (264)
+++|+.++|.|++|+|||||+..++....+..|.+.+-+.+.. .. ..+.+.+++.+|+..+
T Consensus 363 i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~l 425 (576)
T TIGR02204 363 VRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVL 425 (576)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCcc
Confidence 7899999999999999999999998887766665544332211 11 2345567777765443
No 382
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=98.53 E-value=3.5e-07 Score=89.95 Aligned_cols=60 Identities=25% Similarity=0.237 Sum_probs=41.0
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC--CCHHHHHHcCCCcccee
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA--LDPSLAEAMGIDAENLL 176 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~--~~~~~~~~~g~~~~~l~ 176 (264)
+++|+.+.|.|++|||||||+..++....+..|.+.+-+.+.. ....+.+.+++.+|+..
T Consensus 488 i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~ 549 (694)
T TIGR03375 488 IRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPR 549 (694)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChh
Confidence 7899999999999999999998888777666665544322211 11245556776666543
No 383
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=98.52 E-value=3.3e-07 Score=90.29 Aligned_cols=61 Identities=21% Similarity=0.141 Sum_probs=42.5
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCC-C--CCHHHHHHcCCCccceeE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN-A--LDPSLAEAMGIDAENLLI 177 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~-~--~~~~~~~~~g~~~~~l~~ 177 (264)
-+++|+.+.|.||+|||||||+..++....+..|.+. ++... . ....+.+.+|+.+|+..+
T Consensus 496 ~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~-idg~~i~~~~~~~lr~~i~~v~Q~~~l 559 (708)
T TIGR01193 496 TIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEIL-LNGFSLKDIDRHTLRQFINYLPQEPYI 559 (708)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEE-ECCEEHHHcCHHHHHHheEEEecCcee
Confidence 3789999999999999999999888887766666554 44321 1 112455667777765443
No 384
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.52 E-value=6.2e-07 Score=74.77 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=22.9
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
+|+.++|+||||+|||||+..++...
T Consensus 28 ~~~~~~l~G~Ng~GKStll~~i~~~~ 53 (202)
T cd03243 28 SGRLLLITGPNMGGKSTYLRSIGLAV 53 (202)
T ss_pred CCeEEEEECCCCCccHHHHHHHHHHH
Confidence 45999999999999999999998544
No 385
>PRK05642 DNA replication initiation factor; Validated
Probab=98.51 E-value=1.7e-06 Score=73.94 Aligned_cols=134 Identities=14% Similarity=0.235 Sum_probs=76.8
Q ss_pred HHHHhcCCccccccccccCCCCCCccccCcHHHHHHhc-CCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEE
Q 024705 76 QLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALG-IGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYL 154 (264)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~~~~~i~tG~~~LD~~l~-~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~ 154 (264)
|+..++......+..++....+ ..-...++.+.. .++. ....+.|+||+|+|||+|+..++..+...+.+|+|+
T Consensus 5 Ql~l~~~~~~~~tfdnF~~~~~----~~a~~~~~~~~~~~~~~-~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~ 79 (234)
T PRK05642 5 QLPLGVRLRDDATFANYYPGAN----AAALGYVERLCEADAGW-TESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYL 79 (234)
T ss_pred ccccCCCCCCcccccccCcCCh----HHHHHHHHHHhhccccC-CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEe
Confidence 5555666555555555543221 111222333222 0122 235688999999999999999988887778899999
Q ss_pred ecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHH
Q 024705 155 DVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQ 234 (264)
Q Consensus 155 ~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~ 234 (264)
+.+.-... ..++.+.+ .++++++||.+....... ... .
T Consensus 80 ~~~~~~~~--------------------~~~~~~~~------~~~d~LiiDDi~~~~~~~------------~~~----~ 117 (234)
T PRK05642 80 PLAELLDR--------------------GPELLDNL------EQYELVCLDDLDVIAGKA------------DWE----E 117 (234)
T ss_pred eHHHHHhh--------------------hHHHHHhh------hhCCEEEEechhhhcCCh------------HHH----H
Confidence 86431100 12222222 256899999998665311 111 2
Q ss_pred HHHHHHHHHhccCcEEEEEccc
Q 024705 235 ALRKIHYSLCQSHTLIIFLNQV 256 (264)
Q Consensus 235 ~L~~l~~~l~~~g~tVi~i~h~ 256 (264)
.|..+-+.+.+.|..+|+++..
T Consensus 118 ~Lf~l~n~~~~~g~~ilits~~ 139 (234)
T PRK05642 118 ALFHLFNRLRDSGRRLLLAASK 139 (234)
T ss_pred HHHHHHHHHHhcCCEEEEeCCC
Confidence 3444444446777888877764
No 386
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.51 E-value=1e-06 Score=83.20 Aligned_cols=37 Identities=24% Similarity=0.306 Sum_probs=30.2
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
+++|+++.|.||||||||||+..++....+..+.+.+
T Consensus 271 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 307 (491)
T PRK10982 271 LHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITL 307 (491)
T ss_pred EeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEE
Confidence 7899999999999999999998888765555555544
No 387
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=8.3e-07 Score=84.91 Aligned_cols=60 Identities=20% Similarity=0.305 Sum_probs=40.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC-CCH-HHHHHcCCCccce
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA-LDP-SLAEAMGIDAENL 175 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~-~~~-~~~~~~g~~~~~l 175 (264)
-++||+.+.+.||+|+||||++..+..-..+.+|+++.-..+.. .+. .+.+.+|+..|+.
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEP 551 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEP 551 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccc
Confidence 58999999999999999999877777766677776654332221 111 3445666665543
No 388
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=98.51 E-value=9.7e-07 Score=79.46 Aligned_cols=128 Identities=17% Similarity=0.268 Sum_probs=76.4
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH------HHHHHcCCCccce---------------
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP------SLAEAMGIDAENL--------------- 175 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~------~~~~~~g~~~~~l--------------- 175 (264)
+.+|+.+.|.|++|||||||...+....... +.+ +|..+.-... ...+++-+..++.
T Consensus 310 L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I-~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~ 387 (534)
T COG4172 310 LRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEI-RFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIE 387 (534)
T ss_pred ecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceE-EECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhh
Confidence 6789999999999999999999988866544 444 4443322111 1122232222211
Q ss_pred ---eEeCC-CCH--------------------------------HHHHHHHHHHhhcCCccEEEEcCccccccccccCCC
Q 024705 176 ---LIAQP-DSA--------------------------------ENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVP 219 (264)
Q Consensus 176 ---~~~~~-~~~--------------------------------ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~ 219 (264)
.+.++ .+. .+-+.+.+.++ -+|.+|++|..++-..+
T Consensus 388 EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAli--LkP~~i~LDEPTSALD~------ 459 (534)
T COG4172 388 EGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALI--LKPELILLDEPTSALDR------ 459 (534)
T ss_pred hhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHh--cCCcEEEecCCchHhhH------
Confidence 11110 011 11222233332 46788889877765521
Q ss_pred cCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhcC
Q 024705 220 INGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKHF 264 (264)
Q Consensus 220 ~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~~ 264 (264)
.-+..+...|++|. +++|.+-++|+|+..-+-..|
T Consensus 460 -------SVQaQvv~LLr~LQ---~k~~LsYLFISHDL~VvrAl~ 494 (534)
T COG4172 460 -------SVQAQVLDLLRDLQ---QKHGLSYLFISHDLAVVRALC 494 (534)
T ss_pred -------HHHHHHHHHHHHHH---HHhCCeEEEEeccHHHHHHhh
Confidence 23334667888888 899999999999988776544
No 389
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=98.51 E-value=5.7e-07 Score=86.76 Aligned_cols=61 Identities=21% Similarity=0.193 Sum_probs=41.3
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC---CCHHHHHHcCCCccceeE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA---LDPSLAEAMGIDAENLLI 177 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~---~~~~~~~~~g~~~~~l~~ 177 (264)
-+++|+.+.|.||+|+|||||+..++....+..|.+. ++.... ....+.+.+++.+|+..+
T Consensus 357 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~-~~g~~~~~~~~~~~~~~i~~v~q~~~l 420 (585)
T TIGR01192 357 EAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQIL-IDGIDINTVTRESLRKSIATVFQDAGL 420 (585)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEE-ECCEEhhhCCHHHHHhheEEEccCCcc
Confidence 3789999999999999999999888877666566554 433211 112345566766665443
No 390
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.51 E-value=8.8e-07 Score=80.01 Aligned_cols=90 Identities=20% Similarity=0.294 Sum_probs=66.6
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH------HHHHHcCCCccceeEeCCCCHHHHHHHH
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP------SLAEAMGIDAENLLIAQPDSAENLLSVV 190 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~------~~~~~~g~~~~~l~~~~~~~~ee~~~~i 190 (264)
+.+|.++.|+||+|+||||++..++..+...|.+|.+++.|..... .+++.+|++. ....++.++...+
T Consensus 203 ~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv-----~~~~dp~dL~~al 277 (407)
T PRK12726 203 LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVEL-----IVATSPAELEEAV 277 (407)
T ss_pred ecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCE-----EecCCHHHHHHHH
Confidence 5679999999999999999999999988888999999998865431 2344445432 1234567776666
Q ss_pred HHHhhcCCccEEEEcCccccc
Q 024705 191 DTLTKSGSIDVIVVDSVAALI 211 (264)
Q Consensus 191 ~~~~~~~~~~~vvIDsl~~~~ 211 (264)
..+....+.++|+||......
T Consensus 278 ~~l~~~~~~D~VLIDTAGr~~ 298 (407)
T PRK12726 278 QYMTYVNCVDHILIDTVGRNY 298 (407)
T ss_pred HHHHhcCCCCEEEEECCCCCc
Confidence 665433578999999887654
No 391
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.51 E-value=3.3e-07 Score=90.02 Aligned_cols=63 Identities=25% Similarity=0.319 Sum_probs=46.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC-CC-HHHHHHcCCCccceeEe
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA-LD-PSLAEAMGIDAENLLIA 178 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~-~~-~~~~~~~g~~~~~l~~~ 178 (264)
-+++|+.+.|.|++|||||||+..++....+..|.+.+-+.+.. .+ ..+.+.+|+.+|+..++
T Consensus 475 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf 539 (686)
T TIGR03797 475 QIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLM 539 (686)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccC
Confidence 37899999999999999999999988887777776654333322 12 25667788888876554
No 392
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.50 E-value=2.5e-07 Score=91.24 Aligned_cols=63 Identities=22% Similarity=0.319 Sum_probs=44.7
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC-CC-HHHHHHcCCCccceeEe
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA-LD-PSLAEAMGIDAENLLIA 178 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~-~~-~~~~~~~g~~~~~l~~~ 178 (264)
-+++|+.+.|.||+|||||||+..++....+..|.+.+-+.+.. .+ ..+.+.+|+.+|+..++
T Consensus 501 ~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf 565 (710)
T TIGR03796 501 TLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLF 565 (710)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhh
Confidence 37899999999999999999998888877666665544322221 11 24667788887765443
No 393
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.50 E-value=7e-07 Score=70.19 Aligned_cols=60 Identities=23% Similarity=0.279 Sum_probs=37.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcC--CeEEEEe-cCCCCCHHHHHHcCCCccce
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLG--GYCAYLD-VENALDPSLAEAMGIDAENL 175 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g--~~v~~~~-~e~~~~~~~~~~~g~~~~~l 175 (264)
-+.+|+++-+.||+|||||||..-++..+...- ..-++++ .....-+...+.+|+..++-
T Consensus 24 Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~ 86 (213)
T COG4136 24 TIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDA 86 (213)
T ss_pred EecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccc
Confidence 478999999999999999998877777665431 1123333 22222223445577766543
No 394
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.50 E-value=1.4e-06 Score=73.39 Aligned_cols=37 Identities=22% Similarity=0.087 Sum_probs=30.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~ 152 (264)
-+++|+++.|.||||+|||||+..++....+..+.+.
T Consensus 9 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~ 45 (213)
T PRK15177 9 VMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFI 45 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEE
Confidence 3789999999999999999999888876655555554
No 395
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.50 E-value=1.4e-06 Score=84.94 Aligned_cols=36 Identities=28% Similarity=0.415 Sum_probs=29.7
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v 151 (264)
.+.+|+.++|.||||||||||+..++....+..|.+
T Consensus 23 ~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I 58 (638)
T PRK10636 23 TINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSY 58 (638)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 478999999999999999999999888655544444
No 396
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=98.49 E-value=7.4e-07 Score=87.66 Aligned_cols=62 Identities=24% Similarity=0.293 Sum_probs=43.3
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC-CC-HHHHHHcCCCccceeE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA-LD-PSLAEAMGIDAENLLI 177 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~-~~-~~~~~~~g~~~~~l~~ 177 (264)
-+++|+.+.|.|++|||||||+..++....+..|.+.+-+.+.. .+ ..+.+.+++.+++..+
T Consensus 479 ~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~l 542 (694)
T TIGR01846 479 DIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVL 542 (694)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCee
Confidence 37899999999999999999998888877666666544332221 11 2455667777765443
No 397
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.49 E-value=1.1e-06 Score=92.35 Aligned_cols=71 Identities=17% Similarity=0.232 Sum_probs=47.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecC-CC-CCH-HHHHHcCCCccceeEeCCCCHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE-NA-LDP-SLAEAMGIDAENLLIAQPDSAENLL 187 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e-~~-~~~-~~~~~~g~~~~~l~~~~~~~~ee~~ 187 (264)
-+++|+.+.|.||+|||||||+..++....+..|.+.+-+.. .. ... .+.+.+|+.+|+..++. .++.+.+
T Consensus 407 ~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~-~TI~eNI 480 (1466)
T PTZ00265 407 TLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFS-NSIKNNI 480 (1466)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchh-ccHHHHH
Confidence 478999999999999999999888888776666666543322 11 122 34566888877755543 2444333
No 398
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.49 E-value=1.2e-06 Score=85.24 Aligned_cols=34 Identities=29% Similarity=0.474 Sum_probs=28.5
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCC
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGG 149 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~ 149 (264)
-+.+|+++.|.||||||||||+..++....+..|
T Consensus 334 ~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G 367 (638)
T PRK10636 334 NLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSG 367 (638)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 4789999999999999999999998876654333
No 399
>PRK08727 hypothetical protein; Validated
Probab=98.49 E-value=2.3e-06 Score=73.06 Aligned_cols=131 Identities=18% Similarity=0.263 Sum_probs=76.4
Q ss_pred HHHHhcCCccccccccccCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEe
Q 024705 76 QLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (264)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~ 155 (264)
|+..+++.....+..++..... .. ...+-.+.. |. ....++|+||+|+|||+|+..++..+...|.++.|++
T Consensus 5 Ql~l~~~~~~~~~f~~f~~~~~-n~----~~~~~~~~~-~~--~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 5 QLPLALRYPSDQRFDSYIAAPD-GL----LAQLQALAA-GQ--SSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred CccccCCCCCcCChhhccCCcH-HH----HHHHHHHHh-cc--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 5555666555555555542211 11 111222222 22 3456999999999999999999999888888999998
Q ss_pred cCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHH
Q 024705 156 VENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQA 235 (264)
Q Consensus 156 ~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~ 235 (264)
.+... ..+...+..+ .++++++||.+..+.... .... .
T Consensus 77 ~~~~~-----------------------~~~~~~~~~l---~~~dlLiIDDi~~l~~~~------------~~~~----~ 114 (233)
T PRK08727 77 LQAAA-----------------------GRLRDALEAL---EGRSLVALDGLESIAGQR------------EDEV----A 114 (233)
T ss_pred HHHhh-----------------------hhHHHHHHHH---hcCCEEEEeCcccccCCh------------HHHH----H
Confidence 53211 1111222222 467899999987665210 1112 2
Q ss_pred HHHHHHHHhccCcEEEEEccc
Q 024705 236 LRKIHYSLCQSHTLIIFLNQV 256 (264)
Q Consensus 236 L~~l~~~l~~~g~tVi~i~h~ 256 (264)
+..+....++.+..||++++.
T Consensus 115 lf~l~n~~~~~~~~vI~ts~~ 135 (233)
T PRK08727 115 LFDFHNRARAAGITLLYTARQ 135 (233)
T ss_pred HHHHHHHHHHcCCeEEEECCC
Confidence 233444446667888887763
No 400
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.49 E-value=2.6e-06 Score=78.04 Aligned_cols=84 Identities=18% Similarity=0.253 Sum_probs=56.4
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHH-hhcCCeEEEEecCCCCCH------HHHHHcCCCccceeEeCCCCHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEA-QKLGGYCAYLDVENALDP------SLAEAMGIDAENLLIAQPDSAENLLS 188 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~-~~~g~~v~~~~~e~~~~~------~~~~~~g~~~~~l~~~~~~~~ee~~~ 188 (264)
|..++.+++++||+|+||||++.+++... ...|.+|.+++.|..... .+++.+|++... .....++..
T Consensus 219 g~~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~-----~~~~~~l~~ 293 (432)
T PRK12724 219 GKNQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYP-----VKDIKKFKE 293 (432)
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeee-----hHHHHHHHH
Confidence 34567899999999999999999999866 567889999998873322 234555654311 111222222
Q ss_pred HHHHHhhcCCccEEEEcCcc
Q 024705 189 VVDTLTKSGSIDVIVVDSVA 208 (264)
Q Consensus 189 ~i~~~~~~~~~~~vvIDsl~ 208 (264)
. +...+.++|+||+..
T Consensus 294 ~----l~~~~~D~VLIDTaG 309 (432)
T PRK12724 294 T----LARDGSELILIDTAG 309 (432)
T ss_pred H----HHhCCCCEEEEeCCC
Confidence 2 234688999999843
No 401
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.48 E-value=1.7e-06 Score=73.40 Aligned_cols=76 Identities=22% Similarity=0.385 Sum_probs=51.1
Q ss_pred HHHHhcCCccccccccccCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEe
Q 024705 76 QLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (264)
Q Consensus 76 ~l~~~~~~~~~~~~~~~~~~~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~ 155 (264)
|+..++...+..++.++....+...+ ..+..+.. |...+..++|+||+|+|||+|+..++..+...+..+.|++
T Consensus 4 ql~~~~~~~~~~~~d~f~~~~~~~~~----~~l~~~~~--~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~ 77 (227)
T PRK08903 4 QLTLDLGPPPPPTFDNFVAGENAELV----ARLRELAA--GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD 77 (227)
T ss_pred ccccCCCCCChhhhcccccCCcHHHH----HHHHHHHh--ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 55556666655555554422222211 22344433 3466788999999999999999999998878888899988
Q ss_pred cC
Q 024705 156 VE 157 (264)
Q Consensus 156 ~e 157 (264)
..
T Consensus 78 ~~ 79 (227)
T PRK08903 78 AA 79 (227)
T ss_pred hH
Confidence 53
No 402
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.48 E-value=4.7e-06 Score=67.55 Aligned_cols=87 Identities=17% Similarity=0.224 Sum_probs=56.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHH--H----HHHcCCCccceeEeCCCCHHHHHHHHHHHhh
Q 024705 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPS--L----AEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~--~----~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~ 195 (264)
++++.|++|+||||++..++..+...|.++++++.+...... . ++..|++.. ....+.++.++.........
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVF--EEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEE--ecCCCCCHHHHHHHHHHHHH
Confidence 678999999999999999999988888999999988643321 1 222232211 11122344444432222233
Q ss_pred cCCccEEEEcCcccc
Q 024705 196 SGSIDVIVVDSVAAL 210 (264)
Q Consensus 196 ~~~~~~vvIDsl~~~ 210 (264)
..+.++++||.....
T Consensus 80 ~~~~d~viiDt~g~~ 94 (173)
T cd03115 80 EENFDVVIVDTAGRL 94 (173)
T ss_pred hCCCCEEEEECcccc
Confidence 467889999987654
No 403
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.48 E-value=9e-07 Score=85.02 Aligned_cols=60 Identities=22% Similarity=0.253 Sum_probs=42.0
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC--CCHHHHHHcCCCcccee
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA--LDPSLAEAMGIDAENLL 176 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~--~~~~~~~~~g~~~~~l~ 176 (264)
+++|+.+.|.|++|+|||||+..++....+..|.+.+-+.+.. ....+.+.+++.+|+..
T Consensus 355 i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~ 416 (571)
T TIGR02203 355 IEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVV 416 (571)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcc
Confidence 6799999999999999999999988877766666654332221 11234556676666543
No 404
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.48 E-value=5.6e-06 Score=73.86 Aligned_cols=92 Identities=18% Similarity=0.223 Sum_probs=60.2
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC----H--HHHHHcCCCccceeEeCCCCHHHHHHHHH
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD----P--SLAEAMGIDAENLLIAQPDSAENLLSVVD 191 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~----~--~~~~~~g~~~~~l~~~~~~~~ee~~~~i~ 191 (264)
.+|.++.++||||+||||++..++..+...|++|++++.+.... + .++.+.+++.-... ...++.....+.+.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~-~~~dpa~~v~~~l~ 190 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQK-EGADPASVAFDAIQ 190 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeC-CCCCHHHHHHHHHH
Confidence 46899999999999999999999999988899999998875322 1 24455554321100 11122222222232
Q ss_pred HHhhcCCccEEEEcCccccc
Q 024705 192 TLTKSGSIDVIVVDSVAALI 211 (264)
Q Consensus 192 ~~~~~~~~~~vvIDsl~~~~ 211 (264)
.. ...+.++|+||+.....
T Consensus 191 ~~-~~~~~D~ViIDTaGr~~ 209 (318)
T PRK10416 191 AA-KARGIDVLIIDTAGRLH 209 (318)
T ss_pred HH-HhCCCCEEEEeCCCCCc
Confidence 22 23678999999887654
No 405
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.48 E-value=8.6e-08 Score=82.31 Aligned_cols=138 Identities=18% Similarity=0.289 Sum_probs=81.5
Q ss_pred CcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEE-----EEecCCCCC-HHHHHHcCCCccceeE
Q 024705 104 GSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA-----YLDVENALD-PSLAEAMGIDAENLLI 177 (264)
Q Consensus 104 G~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~-----~~~~e~~~~-~~~~~~~g~~~~~l~~ 177 (264)
|--+||.-+. ++...++.|.|++|+||||+...++....+..+.+. ++|.+.... +.-.+++|+..|+-.+
T Consensus 11 G~~~l~a~~~---~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARL 87 (352)
T COG4148 11 GNFALDANFT---LPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARL 87 (352)
T ss_pred CceEEEEecc---CCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeecccc
Confidence 3344454442 444489999999999999976666665544443332 333333322 2446678988875443
Q ss_pred eCCCC-------------H---HHHHHH------------------------HHHHhhcCCccEEEEcCccccccccccC
Q 024705 178 AQPDS-------------A---ENLLSV------------------------VDTLTKSGSIDVIVVDSVAALIPKCEIG 217 (264)
Q Consensus 178 ~~~~~-------------~---ee~~~~------------------------i~~~~~~~~~~~vvIDsl~~~~~~~~~~ 217 (264)
++..+ . +++... -+.+. ..|+++..|..-+-.
T Consensus 88 FpH~tVrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALL--t~P~LLLmDEPLaSL------ 159 (352)
T COG4148 88 FPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALL--TAPELLLMDEPLASL------ 159 (352)
T ss_pred ccceEEecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHh--cCCCeeeecCchhhc------
Confidence 33221 1 111111 11111 356777777544333
Q ss_pred CCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhh
Q 024705 218 VPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLK 262 (264)
Q Consensus 218 ~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~ 262 (264)
+....+++...|.+|. ++.+++|+.+||-..++..
T Consensus 160 -------D~~RK~EilpylERL~---~e~~IPIlYVSHS~~Ev~R 194 (352)
T COG4148 160 -------DLPRKREILPYLERLR---DEINIPILYVSHSLDEVLR 194 (352)
T ss_pred -------ccchhhHHHHHHHHHH---HhcCCCEEEEecCHHHHHh
Confidence 2234456777888887 8999999999999888754
No 406
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.47 E-value=3.6e-07 Score=87.58 Aligned_cols=36 Identities=19% Similarity=0.311 Sum_probs=29.4
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v 151 (264)
-+++|+++.|.||||||||||+..++....+..|.+
T Consensus 27 ~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i 62 (552)
T TIGR03719 27 SFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEA 62 (552)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 478999999999999999999998887655444433
No 407
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.47 E-value=1.2e-06 Score=80.49 Aligned_cols=126 Identities=18% Similarity=0.181 Sum_probs=70.5
Q ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHh
Q 024705 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (264)
Q Consensus 115 gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~ 194 (264)
-|++++.-++|+||||+|||+++..++... +...+.+... ......+|- .+..+..+-...
T Consensus 174 ~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~fi~i~~s----~l~~k~~ge------------~~~~lr~lf~~A 234 (398)
T PTZ00454 174 IGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATFIRVVGS----EFVQKYLGE------------GPRMVRDVFRLA 234 (398)
T ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCEEEEehH----HHHHHhcch------------hHHHHHHHHHHH
Confidence 478888899999999999999999988754 2222222210 111111111 111122222223
Q ss_pred hcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhh
Q 024705 195 KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLK 262 (264)
Q Consensus 195 ~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~ 262 (264)
....+.+++||.+..+... ..+.. ...+...++.+...+..+...-...++.||+++|.-+.++.
T Consensus 235 ~~~~P~ILfIDEID~i~~~-r~~~~--~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDp 299 (398)
T PTZ00454 235 RENAPSIIFIDEVDSIATK-RFDAQ--TGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP 299 (398)
T ss_pred HhcCCeEEEEECHhhhccc-ccccc--CCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCH
Confidence 3467899999999988742 21111 11122333445555555543323457889998886666543
No 408
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=98.47 E-value=1e-06 Score=86.01 Aligned_cols=63 Identities=21% Similarity=0.231 Sum_probs=41.7
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC--H-HH----HHHcCCCccceeEeCC
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD--P-SL----AEAMGIDAENLLIAQP 180 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~--~-~~----~~~~g~~~~~l~~~~~ 180 (264)
+++|+++.|.||||+|||||+..++....+..+.+. ++.+.... . .+ .+.+++.+++..+++.
T Consensus 31 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~-~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 100 (648)
T PRK10535 31 IYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYR-VAGQDVATLDADALAQLRREHFGFIFQRYHLLSH 100 (648)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE-ECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCC
Confidence 779999999999999999999998887655555554 44332211 1 22 2346666665544433
No 409
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=1.2e-06 Score=81.98 Aligned_cols=63 Identities=13% Similarity=0.155 Sum_probs=44.4
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC--CCHHHHHHcCCCccceeEe
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA--LDPSLAEAMGIDAENLLIA 178 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~--~~~~~~~~~g~~~~~l~~~ 178 (264)
-+++|+.+.|+|++||||||++..++.-..+..+.+.+-+.+.. ....+.+.+.+.+++.+++
T Consensus 343 t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf 407 (559)
T COG4988 343 TIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLF 407 (559)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccc
Confidence 37899999999999999999888887776655555555443322 2235677777777665444
No 410
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=7.6e-07 Score=74.53 Aligned_cols=27 Identities=33% Similarity=0.598 Sum_probs=25.0
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHH
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~ 143 (264)
+.+|+++.|.||||||||||+..++..
T Consensus 27 v~~GEvhaiMGPNGsGKSTLa~~i~G~ 53 (251)
T COG0396 27 VKEGEVHAIMGPNGSGKSTLAYTIMGH 53 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 679999999999999999999998874
No 411
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.46 E-value=2.3e-06 Score=68.81 Aligned_cols=116 Identities=14% Similarity=0.144 Sum_probs=65.5
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCC--Cccce---e-EeC-CCCHHHHHHHHH
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGI--DAENL---L-IAQ-PDSAENLLSVVD 191 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~--~~~~l---~-~~~-~~~~ee~~~~i~ 191 (264)
.+.+++|+||||+|||+++..+.........+...-+ +. ..|. ....+ . ... .....+.....+
T Consensus 20 ~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~--------~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~ 90 (162)
T cd03227 20 EGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV--------KAGCIVAAVSAELIFTRLQLSGGEKELSALAL 90 (162)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc--------cCCCcceeeEEEEehheeeccccHHHHHHHHH
Confidence 3479999999999999999998776665432222200 00 0111 00010 0 001 111234444444
Q ss_pred HHhhc--CCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHh
Q 024705 192 TLTKS--GSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLL 260 (264)
Q Consensus 192 ~~~~~--~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~ 260 (264)
.+... .+++++++|++..-... .....+...+.+.. ++ ++++|+++|..+..
T Consensus 91 ~L~~~~~~~~~llllDEp~~gld~-------------~~~~~l~~~l~~~~---~~-~~~vii~TH~~~~~ 144 (162)
T cd03227 91 ILALASLKPRPLYILDEIDRGLDP-------------RDGQALAEAILEHL---VK-GAQVIVITHLPELA 144 (162)
T ss_pred HHHhcCCCCCCEEEEeCCCCCCCH-------------HHHHHHHHHHHHHH---hc-CCEEEEEcCCHHHH
Confidence 44332 37899999988766531 22333445555543 55 89999999987654
No 412
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.45 E-value=1.8e-07 Score=90.95 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v 151 (264)
-+.+|+++.|.||||||||||+..++....+..|.+
T Consensus 341 ~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i 376 (635)
T PRK11147 341 QVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI 376 (635)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE
Confidence 378999999999999999999988887654444443
No 413
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.45 E-value=2.2e-07 Score=89.03 Aligned_cols=36 Identities=36% Similarity=0.479 Sum_probs=29.5
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEE
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~ 152 (264)
+.+|+++.|.||||||||||+..++....+..|.+.
T Consensus 347 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~ 382 (556)
T PRK11819 347 LPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIK 382 (556)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 789999999999999999999988876544455443
No 414
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.44 E-value=1.5e-06 Score=78.06 Aligned_cols=30 Identities=13% Similarity=0.334 Sum_probs=26.5
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
-+++|++++|.||+|||||||+..++....
T Consensus 104 ~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~ 133 (329)
T PRK14257 104 DIKRNKVTAFIGPSGCGKSTFLRNLNQLND 133 (329)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 478999999999999999999998887653
No 415
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=98.44 E-value=2.6e-07 Score=89.57 Aligned_cols=74 Identities=18% Similarity=0.154 Sum_probs=49.1
Q ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHHHHhhc--CCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHH
Q 024705 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKL--GGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLS 188 (264)
Q Consensus 115 gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~--g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~ 188 (264)
+-+++|++++|.||||+|||||+..++...... ..+-++++..........+.+|+.+|+..+....++.|.+.
T Consensus 46 ~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~ 121 (617)
T TIGR00955 46 GVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLM 121 (617)
T ss_pred EEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHHH
Confidence 478999999999999999999998888755332 12334555443222344556788777665555555555443
No 416
>PRK12377 putative replication protein; Provisional
Probab=98.44 E-value=1.8e-06 Score=74.27 Aligned_cols=75 Identities=20% Similarity=0.284 Sum_probs=50.6
Q ss_pred cEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhcCCcc
Q 024705 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSID 200 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~~~~ 200 (264)
..++|+||||+|||+|+..++..+...|..|+|++..+-..... ... + ...+..+ .++.+ ..++
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~-~~~--~-------~~~~~~~---~l~~l---~~~d 165 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLH-ESY--D-------NGQSGEK---FLQEL---CKVD 165 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHH-HHH--h-------ccchHHH---HHHHh---cCCC
Confidence 56899999999999999999999998898999988643222111 110 0 0111122 23332 5899
Q ss_pred EEEEcCccccc
Q 024705 201 VIVVDSVAALI 211 (264)
Q Consensus 201 ~vvIDsl~~~~ 211 (264)
++|||.+....
T Consensus 166 LLiIDDlg~~~ 176 (248)
T PRK12377 166 LLVLDEIGIQR 176 (248)
T ss_pred EEEEcCCCCCC
Confidence 99999997654
No 417
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.44 E-value=1.8e-06 Score=79.92 Aligned_cols=125 Identities=18% Similarity=0.183 Sum_probs=70.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~ 195 (264)
|+.++.-++|+||||+|||+++..++.... ...+.+.... .....+| . ....+..+-....
T Consensus 213 gi~~p~gVLL~GPPGTGKT~LAraIA~el~---~~fi~V~~se----L~~k~~G-----------e-~~~~vr~lF~~A~ 273 (438)
T PTZ00361 213 GIKPPKGVILYGPPGTGKTLLAKAVANETS---ATFLRVVGSE----LIQKYLG-----------D-GPKLVRELFRVAE 273 (438)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHhhC---CCEEEEecch----hhhhhcc-----------h-HHHHHHHHHHHHH
Confidence 677888899999999999999999988653 2222222111 0000011 0 1112222222233
Q ss_pred cCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhh
Q 024705 196 SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLK 262 (264)
Q Consensus 196 ~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~ 262 (264)
...+.+++||.+..+..... .... ......++.+...|..+.......++.||+++|..+.++.
T Consensus 274 ~~~P~ILfIDEID~l~~kR~-~~~s--gg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDp 337 (438)
T PTZ00361 274 ENAPSIVFIDEIDAIGTKRY-DATS--GGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDP 337 (438)
T ss_pred hCCCcEEeHHHHHHHhccCC-CCCC--cccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhH
Confidence 45788999999998874211 1111 1111234445556666544434568899999987666653
No 418
>PLN03073 ABC transporter F family; Provisional
Probab=98.44 E-value=1.7e-06 Score=85.01 Aligned_cols=41 Identities=27% Similarity=0.259 Sum_probs=33.8
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHH---hhcCCeEEEEecC
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEA---QKLGGYCAYLDVE 157 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~---~~~g~~v~~~~~e 157 (264)
+.+|+.++|+||||||||||+..++... .+.++.+.|+..+
T Consensus 200 i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~ 243 (718)
T PLN03073 200 LAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQE 243 (718)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEecc
Confidence 7899999999999999999999887532 3456788887654
No 419
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.43 E-value=2.6e-07 Score=88.09 Aligned_cols=35 Identities=31% Similarity=0.417 Sum_probs=28.6
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeE
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v 151 (264)
+++|+++.|.||||||||||+..++....+..+.+
T Consensus 342 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i 376 (530)
T PRK15064 342 LEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376 (530)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 67999999999999999999998887654444443
No 420
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.43 E-value=8.4e-06 Score=71.20 Aligned_cols=91 Identities=19% Similarity=0.278 Sum_probs=59.8
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH------HHHHHcCCCccceeEeCCCCHHHH-HHHH
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP------SLAEAMGIDAENLLIAQPDSAENL-LSVV 190 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~------~~~~~~g~~~~~l~~~~~~~~ee~-~~~i 190 (264)
.++.++.++||+|+||||++.+++..+...|.+|++++.|..... .++++.|++.- ......++.+. ...+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~--~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVI--KQKEGADPAAVAFDAI 147 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEE--eCCCCCCHHHHHHHHH
Confidence 346789999999999999999999999888899999998853221 24555563311 00111222222 2333
Q ss_pred HHHhhcCCccEEEEcCccccc
Q 024705 191 DTLTKSGSIDVIVVDSVAALI 211 (264)
Q Consensus 191 ~~~~~~~~~~~vvIDsl~~~~ 211 (264)
... ...+.++|+||+.....
T Consensus 148 ~~~-~~~~~D~ViIDT~G~~~ 167 (272)
T TIGR00064 148 QKA-KARNIDVVLIDTAGRLQ 167 (272)
T ss_pred HHH-HHCCCCEEEEeCCCCCc
Confidence 332 23678999999877654
No 421
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.43 E-value=2.5e-06 Score=81.86 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=28.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCe
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGY 150 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~ 150 (264)
-+++|+++.|.||||||||||+..++....+..|.
T Consensus 29 ~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~ 63 (556)
T PRK11819 29 SFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGE 63 (556)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 47899999999999999999998888766544443
No 422
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.43 E-value=7.9e-07 Score=87.67 Aligned_cols=63 Identities=24% Similarity=0.267 Sum_probs=45.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC---CCHHHHHHcCCCccceeEeC
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA---LDPSLAEAMGIDAENLLIAQ 179 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~---~~~~~~~~~g~~~~~l~~~~ 179 (264)
-+++|+.+.|.||+|+||||++..+.....+.+|.+. ++...- ....+.+.+++.+|+..+++
T Consensus 503 ~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~-idg~~i~~~~~~~lr~~i~~v~Q~~~lF~ 568 (711)
T TIGR00958 503 TLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVL-LDGVPLVQYDHHYLHRQVALVGQEPVLFS 568 (711)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEE-ECCEEHHhcCHHHHHhhceEEecCccccc
Confidence 3789999999999999999999888887776666654 443221 11245667888777655443
No 423
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.42 E-value=1.1e-06 Score=84.07 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=39.3
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC-C-HHHHHHcCCCccce
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-D-PSLAEAMGIDAENL 175 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~-~-~~~~~~~g~~~~~l 175 (264)
-+++|+.+.|.||+|||||||+..++....+..|.+.+-..+... . ..+.+.+++.+++.
T Consensus 345 ~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 406 (547)
T PRK10522 345 TIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDF 406 (547)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecCh
Confidence 368999999999999999999988887665555555443222111 1 13444556555543
No 424
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.42 E-value=6.5e-06 Score=65.58 Aligned_cols=66 Identities=15% Similarity=0.189 Sum_probs=42.4
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE----EecCCCCCH----HHHHHcCCCccceeEeCCC
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY----LDVENALDP----SLAEAMGIDAENLLIAQPD 181 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~----~~~e~~~~~----~~~~~~g~~~~~l~~~~~~ 181 (264)
..+.|+.+++.||+|+|||+|+..+-..-.++.+...+ |++...... ...+.+|+..++..+.+..
T Consensus 24 ~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphl 97 (242)
T COG4161 24 DCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHL 97 (242)
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchh
Confidence 36789999999999999999877664443444444332 222222222 3456689888877665544
No 425
>PRK10867 signal recognition particle protein; Provisional
Probab=98.42 E-value=5.4e-06 Score=76.67 Aligned_cols=90 Identities=19% Similarity=0.221 Sum_probs=63.1
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHhhc-CCeEEEEecCCCCCH------HHHHHcCCCccceeEeCCCCHHHHHHHHHH
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVENALDP------SLAEAMGIDAENLLIAQPDSAENLLSVVDT 192 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~~~-g~~v~~~~~e~~~~~------~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~ 192 (264)
..++.++|++|+||||++..++..+... |.+|++++.|..... .+++..|++.-. .....++.++......
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~--~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFP--SGDGQDPVDIAKAALE 177 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEe--cCCCCCHHHHHHHHHH
Confidence 5789999999999999999999998888 889999999865442 134555544211 1112345566644444
Q ss_pred HhhcCCccEEEEcCccccc
Q 024705 193 LTKSGSIDVIVVDSVAALI 211 (264)
Q Consensus 193 ~~~~~~~~~vvIDsl~~~~ 211 (264)
.....++++|+||......
T Consensus 178 ~a~~~~~DvVIIDTaGrl~ 196 (433)
T PRK10867 178 EAKENGYDVVIVDTAGRLH 196 (433)
T ss_pred HHHhcCCCEEEEeCCCCcc
Confidence 4445679999999887553
No 426
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.42 E-value=1.2e-05 Score=68.05 Aligned_cols=104 Identities=25% Similarity=0.338 Sum_probs=64.5
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHhh--cCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhcC
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQK--LGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSG 197 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~~--~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~ 197 (264)
...+.|+||+|+|||+|+..++..+.. .+.+|+|++.+.-... ....+. ....+++...+ .
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~-~~~~~~----------~~~~~~~~~~~------~ 96 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIRE-FADALR----------DGEIEEFKDRL------R 96 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHH-HHHHHH----------TTSHHHHHHHH------C
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHH-HHHHHH----------cccchhhhhhh------h
Confidence 346889999999999999999988775 4778999986431111 000000 11223332222 4
Q ss_pred CccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEccc
Q 024705 198 SIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQV 256 (264)
Q Consensus 198 ~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~ 256 (264)
..++++||.+..+.... . ....+..+.+.+.+.|..+|++++.
T Consensus 97 ~~DlL~iDDi~~l~~~~------------~----~q~~lf~l~n~~~~~~k~li~ts~~ 139 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQ------------R----TQEELFHLFNRLIESGKQLILTSDR 139 (219)
T ss_dssp TSSEEEEETGGGGTTHH------------H----HHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred cCCEEEEecchhhcCch------------H----HHHHHHHHHHHHHhhCCeEEEEeCC
Confidence 79999999998876310 1 1234444555557778889888854
No 427
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.41 E-value=1.4e-06 Score=84.33 Aligned_cols=68 Identities=19% Similarity=0.134 Sum_probs=45.1
Q ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHHHHhhc--CCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCC
Q 024705 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKL--GGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDS 182 (264)
Q Consensus 115 gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~--g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~ 182 (264)
|-..+|+++.|.||+|||||||+..++...... -.+.+.++.+........+..|+..|+-.+....+
T Consensus 51 g~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LT 120 (613)
T KOG0061|consen 51 GTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLT 120 (613)
T ss_pred EEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEccccccccccc
Confidence 578999999999999999999999988877532 22344555544444444555566655443333333
No 428
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.41 E-value=2.2e-06 Score=78.21 Aligned_cols=127 Identities=19% Similarity=0.255 Sum_probs=80.2
Q ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCC-----eEE----EEecCCCCC--HHHHHHcC--CCcc--ceeEeC
Q 024705 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGG-----YCA----YLDVENALD--PSLAEAMG--IDAE--NLLIAQ 179 (264)
Q Consensus 115 gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~-----~v~----~~~~e~~~~--~~~~~~~g--~~~~--~l~~~~ 179 (264)
|.+..|+++.+.||||.|||||+..++..+.+..+ ++- |+..+-... +....... +... ...+..
T Consensus 362 G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~ 441 (591)
T COG1245 362 GEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVK 441 (591)
T ss_pred CeeecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcC
Confidence 78999999999999999999999999988765433 222 444332222 21211111 1111 112223
Q ss_pred CCCHH-------------HHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhcc
Q 024705 180 PDSAE-------------NLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQS 246 (264)
Q Consensus 180 ~~~~e-------------e~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~ 246 (264)
|.+.+ |+....-.+.-...+++.++|..++++.. .|.-.+++.+++++ .+.
T Consensus 442 pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDv-------------EqR~~vakvIRR~~---e~~ 505 (591)
T COG1245 442 PLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDV-------------EQRIIVAKVIRRFI---ENN 505 (591)
T ss_pred ccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccH-------------HHHHHHHHHHHHHH---hhc
Confidence 33333 33333223333468899999999888731 55556778888887 888
Q ss_pred CcEEEEEcccc
Q 024705 247 HTLIIFLNQVK 257 (264)
Q Consensus 247 g~tVi~i~h~~ 257 (264)
+.+.+++.|+.
T Consensus 506 ~kta~vVdHDi 516 (591)
T COG1245 506 EKTALVVDHDI 516 (591)
T ss_pred CceEEEEecce
Confidence 99999999975
No 429
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.41 E-value=1.1e-06 Score=84.50 Aligned_cols=62 Identities=21% Similarity=0.317 Sum_probs=44.3
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCC-C--CCHHHHHHcCCCccceeEe
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN-A--LDPSLAEAMGIDAENLLIA 178 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~-~--~~~~~~~~~g~~~~~l~~~ 178 (264)
-+++|+.+.|.||+|+|||||+..++....+..|.+. ++... . ....+.+.+++.+|+..++
T Consensus 362 ~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~-i~g~~i~~~~~~~~r~~i~~v~Q~~~lf 426 (574)
T PRK11160 362 QIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEIL-LNGQPIADYSEAALRQAISVVSQRVHLF 426 (574)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE-ECCEEhhhCCHHHHHhheeEEcccchhh
Confidence 3789999999999999999999888887766666654 44322 1 1124556688877765444
No 430
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.40 E-value=2.3e-06 Score=77.65 Aligned_cols=87 Identities=10% Similarity=0.200 Sum_probs=62.2
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH------HHHHHcCCCccceeEeCCCCHHHHHHHHHHH
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP------SLAEAMGIDAENLLIAQPDSAENLLSVVDTL 193 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~------~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~ 193 (264)
+..++|+||+|+||||++..++..+...|.++.+++.|..... ..++.+|++. ....+..++...+..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv-----~v~~d~~~L~~aL~~l 315 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEV-----IAVRDEAAMTRALTYF 315 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcE-----EecCCHHHHHHHHHHH
Confidence 4789999999999999999999999888889999998764321 2333444332 2233556666666555
Q ss_pred hhcCCccEEEEcCccccc
Q 024705 194 TKSGSIDVIVVDSVAALI 211 (264)
Q Consensus 194 ~~~~~~~~vvIDsl~~~~ 211 (264)
....+.++|+||......
T Consensus 316 k~~~~~DvVLIDTaGRs~ 333 (436)
T PRK11889 316 KEEARVDYILIDTAGKNY 333 (436)
T ss_pred HhccCCCEEEEeCccccC
Confidence 433468999999877644
No 431
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.40 E-value=1.1e-06 Score=85.67 Aligned_cols=37 Identities=24% Similarity=0.231 Sum_probs=30.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~ 152 (264)
-+++|+.+.|.||||||||||+..++....+..|.+.
T Consensus 25 ~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~ 61 (635)
T PRK11147 25 HIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRII 61 (635)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEE
Confidence 4789999999999999999999988876555455443
No 432
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.40 E-value=8.9e-06 Score=71.22 Aligned_cols=131 Identities=18% Similarity=0.163 Sum_probs=89.9
Q ss_pred cHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhc------CCeEEEEecCCCCCH-----HHHHHcCCCcc
Q 024705 105 SLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL------GGYCAYLDVENALDP-----SLAEAMGIDAE 173 (264)
Q Consensus 105 ~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~------g~~v~~~~~e~~~~~-----~~~~~~g~~~~ 173 (264)
+..|..++....-.+=-..+|+|+++.|||+++..+...-... .-+|+++..-..++. .+...+|.+..
T Consensus 46 L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~ 125 (302)
T PF05621_consen 46 LDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYR 125 (302)
T ss_pred HHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccC
Confidence 3446666652222233568999999999999999998644321 125777776554444 24566777654
Q ss_pred ceeEeCCCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEE
Q 024705 174 NLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFL 253 (264)
Q Consensus 174 ~l~~~~~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i 253 (264)
. ..+..+....+..+++..+++++|||.+..+... +..+++++.+.|+.|. .+..+++|.+
T Consensus 126 ~-----~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaG-----------s~~~qr~~Ln~LK~L~---NeL~ipiV~v 186 (302)
T PF05621_consen 126 P-----RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAG-----------SYRKQREFLNALKFLG---NELQIPIVGV 186 (302)
T ss_pred C-----CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcc-----------cHHHHHHHHHHHHHHh---hccCCCeEEe
Confidence 3 3455666666667777789999999999998731 1267787888888887 7889999987
Q ss_pred c
Q 024705 254 N 254 (264)
Q Consensus 254 ~ 254 (264)
.
T Consensus 187 G 187 (302)
T PF05621_consen 187 G 187 (302)
T ss_pred c
Confidence 5
No 433
>PRK06921 hypothetical protein; Provisional
Probab=98.40 E-value=2.9e-06 Score=73.88 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=34.1
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHHhhc-CCeEEEEec
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDV 156 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~~~~-g~~v~~~~~ 156 (264)
.+..++|+|++|+|||+|+..++..+... |..|+|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 36779999999999999999999999887 889999985
No 434
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.40 E-value=3.2e-07 Score=87.87 Aligned_cols=36 Identities=33% Similarity=0.463 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v 151 (264)
-+.+|+++.|.||||||||||+..++....+..|.+
T Consensus 344 ~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i 379 (552)
T TIGR03719 344 KLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379 (552)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEE
Confidence 378999999999999999999988887654444444
No 435
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=1.1e-06 Score=77.90 Aligned_cols=122 Identities=18% Similarity=0.226 Sum_probs=71.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~ 195 (264)
|+.|..=++++||||+|||.||..+|... .+.|+-.- .+....+-+|--. --+.+++. +.+
T Consensus 181 GI~PPKGVLLYGPPGTGKTLLAkAVA~~T-----~AtFIrvv--gSElVqKYiGEGa--------RlVRelF~----lAr 241 (406)
T COG1222 181 GIDPPKGVLLYGPPGTGKTLLAKAVANQT-----DATFIRVV--GSELVQKYIGEGA--------RLVRELFE----LAR 241 (406)
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhcc-----CceEEEec--cHHHHHHHhccch--------HHHHHHHH----HHh
Confidence 68888889999999999999999887743 23343211 1111222222110 00223333 334
Q ss_pred cCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchH
Q 024705 196 SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVL 259 (264)
Q Consensus 196 ~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~ 259 (264)
.+.|.+|+||.+.++-. ..++... ..+..-+|.+.+.|.+|-.+=..-|+-||+.|+--+.
T Consensus 242 ekaPsIIFiDEIDAIg~-kR~d~~t--~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~ 302 (406)
T COG1222 242 EKAPSIIFIDEIDAIGA-KRFDSGT--SGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDI 302 (406)
T ss_pred hcCCeEEEEechhhhhc-ccccCCC--CchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccc
Confidence 56899999999999985 3333222 1222444556666666654444568888887764443
No 436
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.39 E-value=1.7e-06 Score=78.41 Aligned_cols=87 Identities=15% Similarity=0.263 Sum_probs=59.4
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhc-C-CeEEEEecCCCCC----H--HHHHHcCCCccceeEeCCCCHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKL-G-GYCAYLDVENALD----P--SLAEAMGIDAENLLIAQPDSAENLL 187 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~-g-~~v~~~~~e~~~~----~--~~~~~~g~~~~~l~~~~~~~~ee~~ 187 (264)
-+++|.++++.||+|+||||++..++..+... | .+|.++..+.... + .+++.+|++... ..+..++.
T Consensus 133 ~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~-----~~~~~~l~ 207 (374)
T PRK14722 133 LMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHA-----VKDGGDLQ 207 (374)
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEe-----cCCcccHH
Confidence 35789999999999999999999999987644 5 5888988776432 1 345666765432 22223333
Q ss_pred HHHHHHhhcCCccEEEEcCcccc
Q 024705 188 SVVDTLTKSGSIDVIVVDSVAAL 210 (264)
Q Consensus 188 ~~i~~~~~~~~~~~vvIDsl~~~ 210 (264)
..+..+ .+.++|+||.....
T Consensus 208 ~~l~~l---~~~DlVLIDTaG~~ 227 (374)
T PRK14722 208 LALAEL---RNKHMVLIDTIGMS 227 (374)
T ss_pred HHHHHh---cCCCEEEEcCCCCC
Confidence 333333 46799999988644
No 437
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.39 E-value=4e-06 Score=70.91 Aligned_cols=57 Identities=23% Similarity=0.202 Sum_probs=40.9
Q ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC---HHHHHHcCCC
Q 024705 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD---PSLAEAMGID 171 (264)
Q Consensus 115 gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~---~~~~~~~g~~ 171 (264)
--+++|+-..|.||||||||||+..+++..-+..+.+..+....... ..+.+.+|+.
T Consensus 52 W~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~v 111 (257)
T COG1119 52 WQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLV 111 (257)
T ss_pred eeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCcc
Confidence 35889999999999999999988877776655555566655433222 3566677765
No 438
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.39 E-value=2.2e-06 Score=68.01 Aligned_cols=32 Identities=31% Similarity=0.357 Sum_probs=27.2
Q ss_pred EEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+.|+|+||+||||++..++..+...|.+|.=
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgG 38 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKLREKGYKVGG 38 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhcCceeee
Confidence 47899999999999999999988877766553
No 439
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.39 E-value=2.2e-06 Score=71.37 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=21.4
Q ss_pred CCC-cEEEEEecCCCChHHHHHHHHH
Q 024705 118 PKG-RIVEIYGREASGKTTLALHVIK 142 (264)
Q Consensus 118 ~~G-~~~~I~G~~GsGKTtl~~~l~~ 142 (264)
.+| ++++|.||||+|||||+..+..
T Consensus 25 ~~~~~~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 25 GENKRVLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred CCCceEEEEECCCCCChHHHHHHHHH
Confidence 355 5899999999999999998873
No 440
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.39 E-value=1.9e-06 Score=79.82 Aligned_cols=84 Identities=23% Similarity=0.292 Sum_probs=59.5
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHh--hcCCeEEEEecCCCCC----H--HHHHHcCCCccceeEeCCCCHHHHHHH
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQ--KLGGYCAYLDVENALD----P--SLAEAMGIDAENLLIAQPDSAENLLSV 189 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~--~~g~~v~~~~~e~~~~----~--~~~~~~g~~~~~l~~~~~~~~ee~~~~ 189 (264)
.+|.++.++||+|+||||++..++..+. ..+.+|.+++.|.... + .+++.+|++.. ...+..++...
T Consensus 219 ~~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~-----~~~~~~~l~~~ 293 (424)
T PRK05703 219 KQGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE-----VVYDPKELAKA 293 (424)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE-----ccCCHHhHHHH
Confidence 4478999999999999999999999887 4567999999876422 1 23445565432 22344566665
Q ss_pred HHHHhhcCCccEEEEcCccc
Q 024705 190 VDTLTKSGSIDVIVVDSVAA 209 (264)
Q Consensus 190 i~~~~~~~~~~~vvIDsl~~ 209 (264)
+..+ .+.++|+||....
T Consensus 294 l~~~---~~~DlVlIDt~G~ 310 (424)
T PRK05703 294 LEQL---RDCDVILIDTAGR 310 (424)
T ss_pred HHHh---CCCCEEEEeCCCC
Confidence 5544 3689999998754
No 441
>PF13173 AAA_14: AAA domain
Probab=98.38 E-value=3.5e-06 Score=64.99 Aligned_cols=100 Identities=24% Similarity=0.298 Sum_probs=64.0
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhcCCc
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSI 199 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~~~ 199 (264)
+.+++|.||.|+||||++.+++.... ....++|++++........ ..+ +.+.+.+.. ..+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~~~~----------------~~~-~~~~~~~~~-~~~~ 62 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDRRLA----------------DPD-LLEYFLELI-KPGK 62 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHHHHh----------------hhh-hHHHHHHhh-ccCC
Confidence 56899999999999999999998776 5677899987654321100 000 223333221 1267
Q ss_pred cEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhc-cCcEEEEEcccchHh
Q 024705 200 DVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQ-SHTLIIFLNQVKVLL 260 (264)
Q Consensus 200 ~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~-~g~tVi~i~h~~~~~ 260 (264)
.+++||.++.+-. ....++.+. .+ .++.++++......+
T Consensus 63 ~~i~iDEiq~~~~-------------------~~~~lk~l~---d~~~~~~ii~tgS~~~~l 102 (128)
T PF13173_consen 63 KYIFIDEIQYLPD-------------------WEDALKFLV---DNGPNIKIILTGSSSSLL 102 (128)
T ss_pred cEEEEehhhhhcc-------------------HHHHHHHHH---HhccCceEEEEccchHHH
Confidence 8999999987741 123455554 33 367888887655443
No 442
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=98.38 E-value=1.3e-06 Score=83.75 Aligned_cols=59 Identities=22% Similarity=0.191 Sum_probs=40.3
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC---HHHHHHcCCCccce
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD---PSLAEAMGIDAENL 175 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~---~~~~~~~g~~~~~l 175 (264)
-+++|+.+.|.||+|+|||||+..++....+..|.+. ++...... ..+.+.+++.+++.
T Consensus 364 ~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~-~~g~~i~~~~~~~~~~~i~~v~q~~ 425 (555)
T TIGR01194 364 RIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEIL-LDGAAVSADSRDDYRDLFSAIFADF 425 (555)
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-ECCEECCCCCHHHHHhhCcEEccCh
Confidence 3789999999999999999998888876666666555 44332211 13445566655543
No 443
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.37 E-value=9.3e-06 Score=75.09 Aligned_cols=90 Identities=19% Similarity=0.235 Sum_probs=62.2
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHh-hcCCeEEEEecCCCCCH------HHHHHcCCCccceeEeCCCCHHHHHHHHHH
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQ-KLGGYCAYLDVENALDP------SLAEAMGIDAENLLIAQPDSAENLLSVVDT 192 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~-~~g~~v~~~~~e~~~~~------~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~ 192 (264)
..++.++|++|+||||++..++..+. ..|.+|+++++|..... .+++..|++.-. .....++.++......
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~--~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA--LGKGQSPVEIARRALE 176 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEe--cCCCCCHHHHHHHHHH
Confidence 47899999999999999999999876 57889999999865432 234555654221 1223445555543333
Q ss_pred HhhcCCccEEEEcCccccc
Q 024705 193 LTKSGSIDVIVVDSVAALI 211 (264)
Q Consensus 193 ~~~~~~~~~vvIDsl~~~~ 211 (264)
.....++++|+||+.....
T Consensus 177 ~~~~~~~DvVIIDTaGr~~ 195 (428)
T TIGR00959 177 YAKENGFDVVIVDTAGRLQ 195 (428)
T ss_pred HHHhcCCCEEEEeCCCccc
Confidence 3445678999999877543
No 444
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=98.37 E-value=2.3e-06 Score=86.23 Aligned_cols=133 Identities=14% Similarity=0.150 Sum_probs=84.1
Q ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH---HHHHHcCCCccceeEeCCCCHHHHHHHH-
Q 024705 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP---SLAEAMGIDAENLLIAQPDSAENLLSVV- 190 (264)
Q Consensus 115 gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~---~~~~~~g~~~~~l~~~~~~~~ee~~~~i- 190 (264)
-.+++|++..+.|+||+||||+...+.+.....+|.+..-..+..... ...+.+|+-||...+.+..+..|.+...
T Consensus 586 ~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~a 665 (885)
T KOG0059|consen 586 FAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYA 665 (885)
T ss_pred EEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHH
Confidence 479999999999999999999888777766666665544222222221 3567789988865544444444333211
Q ss_pred --------------HHHh-----------------------------hcCCccEEEEcCccccccccccCCCcCCCCcHH
Q 024705 191 --------------DTLT-----------------------------KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDA 227 (264)
Q Consensus 191 --------------~~~~-----------------------------~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~ 227 (264)
..++ --+.|.+|++|..++-+ +..
T Consensus 666 rlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGm-------------DP~ 732 (885)
T KOG0059|consen 666 RLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGL-------------DPK 732 (885)
T ss_pred HHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCC-------------CHH
Confidence 1110 11457888888754433 113
Q ss_pred HHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhcC
Q 024705 228 QSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKHF 264 (264)
Q Consensus 228 q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~~ 264 (264)
.+|.+-..+.++ ++.|..||+++|-.++.|..|
T Consensus 733 arr~lW~ii~~~----~k~g~aiiLTSHsMeE~EaLC 765 (885)
T KOG0059|consen 733 ARRHLWDIIARL----RKNGKAIILTSHSMEEAEALC 765 (885)
T ss_pred HHHHHHHHHHHH----HhcCCEEEEEcCCHHHHHHHh
Confidence 344444455444 555559999999999998876
No 445
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=9.2e-07 Score=82.03 Aligned_cols=62 Identities=27% Similarity=0.302 Sum_probs=47.5
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC--HHHHHHcCCCccceeE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD--PSLAEAMGIDAENLLI 177 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~--~~~~~~~g~~~~~l~~ 177 (264)
-+.+|+-+.|.|++||||||++..++.....+.|.+.+-+.+...- +...+.+++..|+.++
T Consensus 360 ~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hl 423 (573)
T COG4987 360 TLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHL 423 (573)
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHH
Confidence 4789999999999999999998888888888778777766554432 2466777777765543
No 446
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.36 E-value=2.2e-06 Score=74.60 Aligned_cols=114 Identities=18% Similarity=0.063 Sum_probs=63.6
Q ss_pred cEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC---CHHHHHHcCCCccceeEeCCCCHH--HHHHHHHHHhh
Q 024705 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL---DPSLAEAMGIDAENLLIAQPDSAE--NLLSVVDTLTK 195 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~---~~~~~~~~g~~~~~l~~~~~~~~e--e~~~~i~~~~~ 195 (264)
..++|.||||+|||||+..++.......+.+.+...+-.. ..+++..++..++.-.....+..+ .-..-+..++.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 5789999999999999999988776655554433322221 123444444444432111111111 11222344444
Q ss_pred cCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccch
Q 024705 196 SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKV 258 (264)
Q Consensus 196 ~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~ 258 (264)
..+|+++++|.+... ..+...+..+ + .|++||+++|..+
T Consensus 192 ~~~P~villDE~~~~-------------------e~~~~l~~~~----~-~G~~vI~ttH~~~ 230 (270)
T TIGR02858 192 SMSPDVIVVDEIGRE-------------------EDVEALLEAL----H-AGVSIIATAHGRD 230 (270)
T ss_pred hCCCCEEEEeCCCcH-------------------HHHHHHHHHH----h-CCCEEEEEechhH
Confidence 568999999995311 1112222222 3 5999999999643
No 447
>PRK14974 cell division protein FtsY; Provisional
Probab=98.36 E-value=1.1e-05 Score=72.28 Aligned_cols=90 Identities=18% Similarity=0.218 Sum_probs=59.5
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH------HHHHHcCCCccceeEeCCCCHHHHH-HHHH
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP------SLAEAMGIDAENLLIAQPDSAENLL-SVVD 191 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~------~~~~~~g~~~~~l~~~~~~~~ee~~-~~i~ 191 (264)
++.+++++|+||+||||++..++..+...|.+|++++.+..... .++..+|++.-.. ....++.++. ..+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~--~~g~dp~~v~~~ai~ 216 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKH--KYGADPAAVAYDAIE 216 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecc--cCCCCHHHHHHHHHH
Confidence 35799999999999999999999988888889999887743221 2455666643221 1112222332 2222
Q ss_pred HHhhcCCccEEEEcCccccc
Q 024705 192 TLTKSGSIDVIVVDSVAALI 211 (264)
Q Consensus 192 ~~~~~~~~~~vvIDsl~~~~ 211 (264)
. ....+.++|+||+.....
T Consensus 217 ~-~~~~~~DvVLIDTaGr~~ 235 (336)
T PRK14974 217 H-AKARGIDVVLIDTAGRMH 235 (336)
T ss_pred H-HHhCCCCEEEEECCCccC
Confidence 2 233578899999887664
No 448
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=98.36 E-value=2.9e-06 Score=81.57 Aligned_cols=63 Identities=25% Similarity=0.290 Sum_probs=46.5
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC---CCHHHHHHcCCCccceeEeC
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA---LDPSLAEAMGIDAENLLIAQ 179 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~---~~~~~~~~~g~~~~~l~~~~ 179 (264)
.+++|+.+.|.||+||||||++..+..-..+..|.+.+ +..+- ....+.+.+++.+|+..+++
T Consensus 351 ~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i-dg~dI~~i~~~~lr~~I~~V~Qd~~LF~ 416 (567)
T COG1132 351 SIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI-DGIDIRDISLDSLRKRIGIVSQDPLLFS 416 (567)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEE-CCEehhhcCHHHHHHhccEEcccceeec
Confidence 48899999999999999999888888777665666655 32211 11256778898888776655
No 449
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.36 E-value=8.3e-06 Score=73.03 Aligned_cols=77 Identities=21% Similarity=0.288 Sum_probs=51.7
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhcCCc
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSI 199 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~~~ 199 (264)
+..++|+||+|+|||+|+..++..+...|..|+|++...-......... + . ..+....+..+ ..+
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~--~--------~--~~~~~~~~~~l---~~~ 247 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRF--N--------N--DKELEEVYDLL---INC 247 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHh--c--------c--chhHHHHHHHh---ccC
Confidence 4679999999999999999999999999999999986442222111000 0 0 01111112332 478
Q ss_pred cEEEEcCccccc
Q 024705 200 DVIVVDSVAALI 211 (264)
Q Consensus 200 ~~vvIDsl~~~~ 211 (264)
+++|||.+....
T Consensus 248 DLLIIDDlG~e~ 259 (329)
T PRK06835 248 DLLIIDDLGTEK 259 (329)
T ss_pred CEEEEeccCCCC
Confidence 999999998764
No 450
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=2.2e-06 Score=79.47 Aligned_cols=123 Identities=25% Similarity=0.305 Sum_probs=73.5
Q ss_pred hcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHH
Q 024705 112 LGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVD 191 (264)
Q Consensus 112 l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~ 191 (264)
|| |-+|+| +++.||||+|||.||..++.++ + |-||....+...+.. +|+-..+ +.+++...
T Consensus 332 LG-GKLPKG--VLLvGPPGTGKTlLARAvAGEA---~--VPFF~~sGSEFdEm~--VGvGArR--------VRdLF~aA- 392 (752)
T KOG0734|consen 332 LG-GKLPKG--VLLVGPPGTGKTLLARAVAGEA---G--VPFFYASGSEFDEMF--VGVGARR--------VRDLFAAA- 392 (752)
T ss_pred cc-CcCCCc--eEEeCCCCCchhHHHHHhhccc---C--CCeEeccccchhhhh--hcccHHH--------HHHHHHHH-
Confidence 56 789999 8999999999999999998854 3 334433222111111 1211111 22333322
Q ss_pred HHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhh
Q 024705 192 TLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLK 262 (264)
Q Consensus 192 ~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~ 262 (264)
+...|.+|+||.+.++-.+.. . .......+.+.+.|.++-..-...|+.||..+.--+.++.
T Consensus 393 ---k~~APcIIFIDEiDavG~kR~-~-----~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~ 454 (752)
T KOG0734|consen 393 ---KARAPCIIFIDEIDAVGGKRN-P-----SDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDK 454 (752)
T ss_pred ---HhcCCeEEEEechhhhcccCC-c-----cHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhH
Confidence 345899999999999874211 1 0011233446667777766656678888877776666543
No 451
>PLN03073 ABC transporter F family; Provisional
Probab=98.35 E-value=4.9e-06 Score=81.87 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=28.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCe
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGY 150 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~ 150 (264)
.+.+|+++.|.||||||||||+..++....+..|.
T Consensus 531 ~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~ 565 (718)
T PLN03073 531 GIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGT 565 (718)
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCce
Confidence 47899999999999999999999988766544443
No 452
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.35 E-value=5.2e-06 Score=70.03 Aligned_cols=50 Identities=24% Similarity=0.351 Sum_probs=39.3
Q ss_pred cHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecC
Q 024705 105 SLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (264)
Q Consensus 105 ~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e 157 (264)
+..+..++. + ..+..++|+||+|+|||+++..++......+..++|++..
T Consensus 26 ~~~l~~~~~-~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~ 75 (226)
T TIGR03420 26 LAALRQLAA-G--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA 75 (226)
T ss_pred HHHHHHHHh-c--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH
Confidence 345666553 2 4567899999999999999999999887777888888754
No 453
>PLN03140 ABC transporter G family member; Provisional
Probab=98.33 E-value=1.5e-06 Score=91.22 Aligned_cols=39 Identities=31% Similarity=0.431 Sum_probs=31.1
Q ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHHHHhhc---CCeEEE
Q 024705 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKL---GGYCAY 153 (264)
Q Consensus 115 gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~---g~~v~~ 153 (264)
|-+++|++++|.||||||||||+..++....+. .|.+.|
T Consensus 186 ~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~ 227 (1470)
T PLN03140 186 GIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITY 227 (1470)
T ss_pred EEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEE
Confidence 468999999999999999999999888766443 444544
No 454
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.33 E-value=4.3e-06 Score=71.56 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCChHHHHHHHHH
Q 024705 120 GRIVEIYGREASGKTTLALHVIK 142 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~ 142 (264)
|++++|.||||+|||||+..+..
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~~ 45 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIRF 45 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999888873
No 455
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.32 E-value=4.2e-07 Score=73.48 Aligned_cols=64 Identities=17% Similarity=0.195 Sum_probs=41.1
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC------------CCH----HHHHHcCCCccceeEeCC
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA------------LDP----SLAEAMGIDAENLLIAQP 180 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~------------~~~----~~~~~~g~~~~~l~~~~~ 180 (264)
-..|+++.|+|-+|||||||+.++-..-.+ ....+.+..|+- .+. ....++|+..+++.+...
T Consensus 29 A~~GdVisIIGsSGSGKSTfLRCiN~LE~P-~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsH 107 (256)
T COG4598 29 ANAGDVISIIGSSGSGKSTFLRCINFLEKP-SAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSH 107 (256)
T ss_pred cCCCCEEEEecCCCCchhHHHHHHHhhcCC-CCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHH
Confidence 357999999999999999998877543333 333444444431 111 234568888887765543
Q ss_pred C
Q 024705 181 D 181 (264)
Q Consensus 181 ~ 181 (264)
.
T Consensus 108 m 108 (256)
T COG4598 108 M 108 (256)
T ss_pred H
Confidence 3
No 456
>PLN03232 ABC transporter C family member; Provisional
Probab=98.32 E-value=2.9e-06 Score=89.75 Aligned_cols=63 Identities=14% Similarity=0.208 Sum_probs=44.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC--C-HHHHHHcCCCccceeEeC
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL--D-PSLAEAMGIDAENLLIAQ 179 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~--~-~~~~~~~g~~~~~l~~~~ 179 (264)
-+++|+.+.|+||+||||||++..+..-..+..|.+ +++...-. . ..+.+++++.+|+..+++
T Consensus 1258 ~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I-~IdG~di~~i~~~~lR~~i~iVpQdp~LF~ 1323 (1495)
T PLN03232 1258 FVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRI-MIDDCDVAKFGLTDLRRVLSIIPQSPVLFS 1323 (1495)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceE-EECCEEhhhCCHHHHHhhcEEECCCCeeeC
Confidence 378999999999999999999888888766666655 44432211 1 245667888877665543
No 457
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=98.31 E-value=3.6e-06 Score=88.72 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=27.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQK 146 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~ 146 (264)
-+++|+.+.|.||+||||||++..+..-..+
T Consensus 1190 ~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1190 SCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 3789999999999999999988888776654
No 458
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.31 E-value=1.8e-05 Score=65.85 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=23.1
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
+.+| +++|+||||+|||||+..+....
T Consensus 20 ~~~g-~~~i~G~nGsGKStll~al~~l~ 46 (197)
T cd03278 20 FPPG-LTAIVGPNGSGKSNIIDAIRWVL 46 (197)
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHh
Confidence 5568 99999999999999998887554
No 459
>PLN03140 ABC transporter G family member; Provisional
Probab=98.30 E-value=3.4e-06 Score=88.66 Aligned_cols=72 Identities=18% Similarity=0.198 Sum_probs=43.4
Q ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHHHHhh--cCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHH
Q 024705 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQK--LGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLL 187 (264)
Q Consensus 115 gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~--~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~ 187 (264)
+-+++|+++.|.||||+|||||+..++..... ..+.+ .++..........+.+|+..|+.......++.|.+
T Consensus 901 ~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I-~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L 974 (1470)
T PLN03140 901 GAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDI-RISGFPKKQETFARISGYCEQNDIHSPQVTVRESL 974 (1470)
T ss_pred EEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceE-EECCccCChHHhhhheEEEccccccCCCCcHHHHH
Confidence 47899999999999999999998888875321 12333 34332211122334467666654444444444443
No 460
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.30 E-value=1.3e-05 Score=73.86 Aligned_cols=89 Identities=19% Similarity=0.131 Sum_probs=58.5
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH------HHHHHcCCCccceeEeCCCCHHHHHH-HHHH
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP------SLAEAMGIDAENLLIAQPDSAENLLS-VVDT 192 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~------~~~~~~g~~~~~l~~~~~~~~ee~~~-~i~~ 192 (264)
..++.++|++|+||||++..++..+...|.+|++++.|..... ..++..+++.- ......++.++.. .+..
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~--~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFY--GSYTESDPVKIASEGVEK 177 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEE--eecCCCCHHHHHHHHHHH
Confidence 4789999999999999999999988888889999998754332 12333444321 1122223333332 3333
Q ss_pred HhhcCCccEEEEcCccccc
Q 024705 193 LTKSGSIDVIVVDSVAALI 211 (264)
Q Consensus 193 ~~~~~~~~~vvIDsl~~~~ 211 (264)
+ +..+.++|+||......
T Consensus 178 ~-~~~~~DvViIDTaGr~~ 195 (429)
T TIGR01425 178 F-KKENFDIIIVDTSGRHK 195 (429)
T ss_pred H-HhCCCCEEEEECCCCCc
Confidence 2 23578999999887543
No 461
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.30 E-value=4.8e-06 Score=76.42 Aligned_cols=124 Identities=19% Similarity=0.195 Sum_probs=66.4
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~ 195 (264)
|+.+..-++|+||||+|||+++..++... +...+.++... ......| ..+.....+-....
T Consensus 161 g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~~i~v~~~~----l~~~~~g------------~~~~~i~~~f~~a~ 221 (389)
T PRK03992 161 GIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGSE----LVQKFIG------------EGARLVRELFELAR 221 (389)
T ss_pred CCCCCCceEEECCCCCChHHHHHHHHHHh---CCCEEEeehHH----HhHhhcc------------chHHHHHHHHHHHH
Confidence 56666679999999999999999998754 33344443211 0111011 11222222222233
Q ss_pred cCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhh
Q 024705 196 SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLL 261 (264)
Q Consensus 196 ~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~ 261 (264)
...+.+++||.+..+..... .+ ....+...++.+.+.+..+...-...++.||++++..+.++
T Consensus 222 ~~~p~IlfiDEiD~l~~~r~-~~--~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld 284 (389)
T PRK03992 222 EKAPSIIFIDEIDAIAAKRT-DS--GTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILD 284 (389)
T ss_pred hcCCeEEEEechhhhhcccc-cC--CCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCC
Confidence 45788999999999874211 11 11112233444455544443222234777887776554443
No 462
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.29 E-value=3.9e-06 Score=79.01 Aligned_cols=132 Identities=16% Similarity=0.231 Sum_probs=70.0
Q ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHHHHhhc-----CCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHH
Q 024705 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKL-----GGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSV 189 (264)
Q Consensus 115 gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~-----g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~ 189 (264)
-|+++..-++|+||||+|||+++..++..+... +....|++.... .......|-. ......++..
T Consensus 211 ~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~--eLl~kyvGet--------e~~ir~iF~~ 280 (512)
T TIGR03689 211 YDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP--ELLNKYVGET--------ERQIRLIFQR 280 (512)
T ss_pred ccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch--hhcccccchH--------HHHHHHHHHH
Confidence 367777779999999999999999999877543 223334332110 0000000000 0011223333
Q ss_pred HHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhh
Q 024705 190 VDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLL 261 (264)
Q Consensus 190 i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~ 261 (264)
++.....+.+.+++||.+..+..... . +..++.+.+.+.++|..+-..-...++.||.++..-+.++
T Consensus 281 Ar~~a~~g~p~IIfIDEiD~L~~~R~-~----~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LD 347 (512)
T TIGR03689 281 AREKASDGRPVIVFFDEMDSIFRTRG-S----GVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMID 347 (512)
T ss_pred HHHHhhcCCCceEEEehhhhhhcccC-C----CccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCC
Confidence 33333445788999999999874211 1 1122233444455555543322334677776665544443
No 463
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.29 E-value=7.1e-06 Score=69.08 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=21.7
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHH
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
+..++|+||||+|||||+..++...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~ 53 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIV 53 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHH
Confidence 4789999999999999999988543
No 464
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.29 E-value=3.8e-06 Score=75.49 Aligned_cols=39 Identities=28% Similarity=0.346 Sum_probs=33.5
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEe
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~ 155 (264)
+.+|+++.|+|.||||||||++.+.....++.+.+.+-+
T Consensus 346 ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg 384 (546)
T COG4615 346 IKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDG 384 (546)
T ss_pred EecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECC
Confidence 679999999999999999999999888877777665544
No 465
>PLN03130 ABC transporter C family member; Provisional
Probab=98.28 E-value=3.6e-06 Score=89.45 Aligned_cols=61 Identities=18% Similarity=0.268 Sum_probs=43.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC--C-HHHHHHcCCCccceeE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL--D-PSLAEAMGIDAENLLI 177 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~--~-~~~~~~~g~~~~~l~~ 177 (264)
-+++|+.+.|+||+||||||++..+..-..+..|.+ +++..... . ..+.+++++.+|+..+
T Consensus 1261 ~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I-~IDG~dI~~i~l~~LR~~IsiVpQdp~L 1324 (1622)
T PLN03130 1261 EISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRI-LIDGCDISKFGLMDLRKVLGIIPQAPVL 1324 (1622)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceE-EECCEecccCCHHHHHhccEEECCCCcc
Confidence 378999999999999999998888887666655554 55543221 1 2456678877776544
No 466
>PRK08116 hypothetical protein; Validated
Probab=98.28 E-value=7.7e-06 Score=71.29 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=33.4
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecC
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e 157 (264)
+..++|+|++|+|||+|+..++..+...+.+++|++..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~ 151 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFP 151 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 34589999999999999999999998888899998853
No 467
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.28 E-value=9.5e-06 Score=71.26 Aligned_cols=35 Identities=31% Similarity=0.517 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCe
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGY 150 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~ 150 (264)
-+++|+++.|.||||+|||||+..++....+..+.
T Consensus 59 ~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~ 93 (282)
T cd03291 59 KIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGK 93 (282)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 37899999999999999999999888766554444
No 468
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.27 E-value=5.3e-06 Score=70.32 Aligned_cols=28 Identities=25% Similarity=0.232 Sum_probs=24.1
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
.+++++++|.||||+||||++..++...
T Consensus 27 ~~~~~~~~l~G~n~~GKstll~~i~~~~ 54 (222)
T cd03285 27 RGKSRFLIITGPNMGGKSTYIRQIGVIV 54 (222)
T ss_pred ecCCeEEEEECCCCCChHHHHHHHHHHH
Confidence 4578999999999999999988887653
No 469
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.26 E-value=1.9e-06 Score=70.65 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=24.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQK 146 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~ 146 (264)
++.+|+++++.||+||||||++..++.-..+
T Consensus 27 ~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P 57 (259)
T COG4525 27 TIASGELVVVLGPSGCGKTTLLNLIAGFVTP 57 (259)
T ss_pred eecCCCEEEEEcCCCccHHHHHHHHhcCcCc
Confidence 6889999999999999999965555444333
No 470
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.26 E-value=2.4e-05 Score=67.82 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=24.4
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIK 142 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~ 142 (264)
.+|.|.++.|+|++|||||||+..+..
T Consensus 17 ~ip~g~~~~vtGvSGsGKStL~~~~l~ 43 (261)
T cd03271 17 DIPLGVLTCVTGVSGSGKSSLINDTLY 43 (261)
T ss_pred eccCCcEEEEECCCCCchHHHHHHHHH
Confidence 478999999999999999999987754
No 471
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.25 E-value=4.5e-05 Score=70.80 Aligned_cols=99 Identities=23% Similarity=0.254 Sum_probs=63.6
Q ss_pred HHHHHHhcCCCC------CCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH------HHHHHcCCCcc
Q 024705 106 LKLDLALGIGGL------PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP------SLAEAMGIDAE 173 (264)
Q Consensus 106 ~~LD~~l~~gGl------~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~------~~~~~~g~~~~ 173 (264)
.+|-.+++ ++- .+..++.++|++|+||||++..++..+...|.+|++++.+..... .+++.+|++.
T Consensus 76 ~~L~~~l~-~~~~~~~~~~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~- 153 (437)
T PRK00771 76 EELVKLLG-EETEPLVLPLKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPF- 153 (437)
T ss_pred HHHHHHhC-CCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcE-
Confidence 35556665 321 246789999999999999999999988888889999998764332 2345556542
Q ss_pred ceeEe-CCCCHHHHH-HHHHHHhhcCCccEEEEcCccccc
Q 024705 174 NLLIA-QPDSAENLL-SVVDTLTKSGSIDVIVVDSVAALI 211 (264)
Q Consensus 174 ~l~~~-~~~~~ee~~-~~i~~~~~~~~~~~vvIDsl~~~~ 211 (264)
... ...++.+++ ..+... ...++|+||......
T Consensus 154 --~~~~~~~d~~~i~~~al~~~---~~~DvVIIDTAGr~~ 188 (437)
T PRK00771 154 --YGDPDNKDAVEIAKEGLEKF---KKADVIIVDTAGRHA 188 (437)
T ss_pred --EecCCccCHHHHHHHHHHHh---hcCCEEEEECCCccc
Confidence 111 112333333 233332 234999999876544
No 472
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=5.6e-06 Score=72.57 Aligned_cols=133 Identities=11% Similarity=0.128 Sum_probs=78.3
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHHhhc----CCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHh
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEAQKL----GGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~~~~----g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~ 194 (264)
-..++++.||||+|||+||..++..+.-+ ..+...+.. .......+.++- ...-+..+++.+.+++
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEi--nshsLFSKWFsE--------SgKlV~kmF~kI~ELv 245 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEI--NSHSLFSKWFSE--------SGKLVAKMFQKIQELV 245 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEE--ehhHHHHHHHhh--------hhhHHHHHHHHHHHHH
Confidence 35789999999999999999998876532 111112111 011111111111 1223456777788887
Q ss_pred hcCC-ccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 195 KSGS-IDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 195 ~~~~-~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
+..+ .-.|.||.+.++.....-.....+.+ ...|.+...|.++-+.-+..|+.++.++.+.+.++..
T Consensus 246 ~d~~~lVfvLIDEVESLa~aR~s~~S~~Eps--DaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~A 313 (423)
T KOG0744|consen 246 EDRGNLVFVLIDEVESLAAARTSASSRNEPS--DAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVA 313 (423)
T ss_pred hCCCcEEEEEeHHHHHHHHHHHhhhcCCCCc--hHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHH
Confidence 6644 45688998887763211111111111 3355566666766655566799999999999888754
No 473
>PTZ00243 ABC transporter; Provisional
Probab=98.24 E-value=5.2e-06 Score=88.08 Aligned_cols=62 Identities=23% Similarity=0.282 Sum_probs=43.4
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC-C-HHHHHHcCCCccceeEe
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-D-PSLAEAMGIDAENLLIA 178 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~-~-~~~~~~~g~~~~~l~~~ 178 (264)
+++|+.+.|+|++|||||||+..+..-....+|.+.+-+.+... . ..+.+.+++.+|+..++
T Consensus 1333 I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF 1396 (1560)
T PTZ00243 1333 IAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLF 1396 (1560)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccc
Confidence 67999999999999999999988887776666665443322221 1 24566788877765443
No 474
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.24 E-value=1.1e-05 Score=67.09 Aligned_cols=43 Identities=21% Similarity=0.333 Sum_probs=36.4
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCC
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN 158 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~ 158 (264)
-++.|+++.|.|-||+|||||+..++......++++.+-..+-
T Consensus 28 ~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dV 70 (263)
T COG1101 28 EIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDV 70 (263)
T ss_pred eecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceec
Confidence 4789999999999999999999999999888888776544443
No 475
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.24 E-value=4.1e-06 Score=76.18 Aligned_cols=124 Identities=19% Similarity=0.184 Sum_probs=65.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~ 195 (264)
|+.+..-++|+||||+|||+++..++.... ...+.+. ........+| ........+-....
T Consensus 152 g~~~p~gvLL~GppGtGKT~lakaia~~l~---~~~~~v~----~~~l~~~~~g------------~~~~~i~~~f~~a~ 212 (364)
T TIGR01242 152 GIEPPKGVLLYGPPGTGKTLLAKAVAHETN---ATFIRVV----GSELVRKYIG------------EGARLVREIFELAK 212 (364)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHhCC---CCEEecc----hHHHHHHhhh------------HHHHHHHHHHHHHH
Confidence 566666799999999999999999987542 2211111 0111111111 01112222222333
Q ss_pred cCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhh
Q 024705 196 SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLL 261 (264)
Q Consensus 196 ~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~ 261 (264)
...+.+++||.+..+... .. +.. ...+...++.+.+.+..+...-...++.||++++..+.++
T Consensus 213 ~~~p~il~iDEiD~l~~~-~~-~~~-~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld 275 (364)
T TIGR01242 213 EKAPSIIFIDEIDAIAAK-RT-DSG-TSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILD 275 (364)
T ss_pred hcCCcEEEhhhhhhhccc-cc-cCC-CCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCC
Confidence 457889999999988742 11 111 1112234444555555543221234788888887655443
No 476
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.24 E-value=1.4e-05 Score=67.85 Aligned_cols=23 Identities=39% Similarity=0.745 Sum_probs=20.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLAL 138 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~ 138 (264)
-+++|+++.|.|+||||||||+.
T Consensus 17 ~i~~Ge~~~l~G~sGsGKSTL~~ 39 (226)
T cd03270 17 DIPRNKLVVITGVSGSGKSSLAF 39 (226)
T ss_pred ecCCCcEEEEEcCCCCCHHHHHH
Confidence 37899999999999999999973
No 477
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=98.24 E-value=5.8e-06 Score=87.66 Aligned_cols=61 Identities=25% Similarity=0.319 Sum_probs=43.3
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCC-CC-C-HHHHHHcCCCccceeEe
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN-AL-D-PSLAEAMGIDAENLLIA 178 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~-~~-~-~~~~~~~g~~~~~l~~~ 178 (264)
+++|+.++|+|++|||||||+..+..-....+|.+ +++... .. . ....+++++.+|+..++
T Consensus 1309 I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I-~IdG~dI~~i~~~~LR~~i~iVpQdp~LF 1372 (1522)
T TIGR00957 1309 IHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEI-IIDGLNIAKIGLHDLRFKITIIPQDPVLF 1372 (1522)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeE-EECCEEccccCHHHHHhcCeEECCCCccc
Confidence 78999999999999999999888877666666654 444322 21 1 24566788777765443
No 478
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.23 E-value=9e-06 Score=70.29 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=37.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecC
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e 157 (264)
-++++..++++||||+|||.|+..++..++..|..|+|+..-
T Consensus 101 ~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~ 142 (254)
T COG1484 101 FFERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAP 142 (254)
T ss_pred HhccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 355888999999999999999999999999889999999853
No 479
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.22 E-value=4.3e-06 Score=72.02 Aligned_cols=100 Identities=24% Similarity=0.249 Sum_probs=58.1
Q ss_pred HHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhc--CCeEEEE-ecCCCCCH-HHHHHcCCCccceeEeCCC
Q 024705 106 LKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL--GGYCAYL-DVENALDP-SLAEAMGIDAENLLIAQPD 181 (264)
Q Consensus 106 ~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~--g~~v~~~-~~e~~~~~-~~~~~~g~~~~~l~~~~~~ 181 (264)
..+|.++. +.+|+.++|.||+|+||||++..++...... +..+.++ ..+...+. ...+.+ ..-+.....+
T Consensus 5 ~~id~~~~---i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I---~~~~v~~~~~ 78 (249)
T cd01128 5 RVVDLFAP---IGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSV---KGEVIASTFD 78 (249)
T ss_pred hheeeecc---cCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHh---ccEEEEecCC
Confidence 45677765 7799999999999999999999988877543 2232323 44432332 233322 1111111111
Q ss_pred -CH-------HHHHHHHHHHhhcCCccEEEEcCccccc
Q 024705 182 -SA-------ENLLSVVDTLTKSGSIDVIVVDSVAALI 211 (264)
Q Consensus 182 -~~-------ee~~~~i~~~~~~~~~~~vvIDsl~~~~ 211 (264)
+. .......+.....++.-++++|+++.+.
T Consensus 79 ~~~~~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a 116 (249)
T cd01128 79 EPPERHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLA 116 (249)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHhh
Confidence 11 1223333443344566789999999876
No 480
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.22 E-value=1.5e-05 Score=64.87 Aligned_cols=43 Identities=28% Similarity=0.293 Sum_probs=35.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCC
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN 158 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~ 158 (264)
-++.|+...|.|.||||||||+..++.-+.+.++.+++-+..-
T Consensus 35 tL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L 77 (267)
T COG4167 35 TLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPL 77 (267)
T ss_pred EecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccc
Confidence 3678999999999999999999999988888788777655443
No 481
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.21 E-value=4e-06 Score=70.49 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=22.5
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHH
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIK 142 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~ 142 (264)
...|+++.|+||||+||||++..+..
T Consensus 25 ~~~~~~~~i~G~NGsGKSTll~~i~~ 50 (213)
T cd03279 25 LDNNGLFLICGPTGAGKSTILDAITY 50 (213)
T ss_pred CCccCEEEEECCCCCCHHHHHHHhee
Confidence 34588999999999999999988764
No 482
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.21 E-value=2.2e-05 Score=71.74 Aligned_cols=85 Identities=19% Similarity=0.213 Sum_probs=59.3
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHHhh----cCCeEEEEecCCCCCH------HHHHHcCCCccceeEeCCCCHHHHHH
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEAQK----LGGYCAYLDVENALDP------SLAEAMGIDAENLLIAQPDSAENLLS 188 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~~~----~g~~v~~~~~e~~~~~------~~~~~~g~~~~~l~~~~~~~~ee~~~ 188 (264)
.+.+++++||+|+||||++..++..+.. .|.+|.+++.|..... .+++.+|++. ....+.+++..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv-----~~~~~~~~l~~ 247 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV-----KAIESFKDLKE 247 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcce-----EeeCcHHHHHH
Confidence 3579999999999999999999987763 4678999998864321 2345556543 12234455555
Q ss_pred HHHHHhhcCCccEEEEcCccccc
Q 024705 189 VVDTLTKSGSIDVIVVDSVAALI 211 (264)
Q Consensus 189 ~i~~~~~~~~~~~vvIDsl~~~~ 211 (264)
.+... .+.++|+||......
T Consensus 248 ~L~~~---~~~DlVLIDTaGr~~ 267 (388)
T PRK12723 248 EITQS---KDFDLVLVDTIGKSP 267 (388)
T ss_pred HHHHh---CCCCEEEEcCCCCCc
Confidence 55443 578999999887554
No 483
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.21 E-value=1.1e-05 Score=64.74 Aligned_cols=62 Identities=21% Similarity=0.213 Sum_probs=44.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC-----H-----HHHHHcCCCccceeE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD-----P-----SLAEAMGIDAENLLI 177 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~-----~-----~~~~~~g~~~~~l~~ 177 (264)
.+..|+++++.||+|+||||++..+.++....++.+..=..++..+ + .+...+|+..|-+.+
T Consensus 33 sV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRv 104 (235)
T COG4778 33 SVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRV 104 (235)
T ss_pred EecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHh
Confidence 4778999999999999999999999999988777765443333221 1 245567777664433
No 484
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=98.21 E-value=4.2e-06 Score=87.89 Aligned_cols=58 Identities=22% Similarity=0.347 Sum_probs=38.1
Q ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHHHHh---hcCCeEEEEecCCCCCHHHHHHcCCCccc
Q 024705 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQ---KLGGYCAYLDVENALDPSLAEAMGIDAEN 174 (264)
Q Consensus 115 gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~---~~g~~v~~~~~e~~~~~~~~~~~g~~~~~ 174 (264)
+-+++|+++.|.||||+|||||+..++.... ...|.+ +++.... .....+.+|+.+|+
T Consensus 784 ~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I-~i~G~~~-~~~~~~~i~yv~Q~ 844 (1394)
T TIGR00956 784 GWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDR-LVNGRPL-DSSFQRSIGYVQQQ 844 (1394)
T ss_pred EEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEE-EECCEEC-Chhhhcceeeeccc
Confidence 4689999999999999999999888877543 122434 4443322 12234456666654
No 485
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.21 E-value=5.3e-06 Score=68.25 Aligned_cols=22 Identities=32% Similarity=0.228 Sum_probs=19.2
Q ss_pred EEEEecCCCChHHHHHHHHHHH
Q 024705 123 VEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 123 ~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
++|+||||+||||++..++...
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~ 23 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIV 23 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6799999999999999998544
No 486
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.20 E-value=1.4e-05 Score=68.64 Aligned_cols=76 Identities=22% Similarity=0.390 Sum_probs=49.8
Q ss_pred cEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhcCCcc
Q 024705 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSID 200 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~~~~ 200 (264)
..++++|++|+|||+|+..++..+...|..|+|++...-... +...+. + ...+.++++. .+ ..++
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~-l~~~~~----~----~~~~~~~~l~---~l---~~~d 164 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSA-MKDTFS----N----SETSEEQLLN---DL---SNVD 164 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHH-HHHHHh----h----ccccHHHHHH---Hh---ccCC
Confidence 468999999999999999999999988999999974321111 111110 0 0112223332 22 3799
Q ss_pred EEEEcCccccc
Q 024705 201 VIVVDSVAALI 211 (264)
Q Consensus 201 ~vvIDsl~~~~ 211 (264)
+++||.+....
T Consensus 165 lLvIDDig~~~ 175 (244)
T PRK07952 165 LLVIDEIGVQT 175 (244)
T ss_pred EEEEeCCCCCC
Confidence 99999997654
No 487
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=8e-06 Score=76.88 Aligned_cols=119 Identities=24% Similarity=0.300 Sum_probs=73.7
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHH-HHHHcCCCccceeEeCCCCHHHHHHHHHHHh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPS-LAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~-~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~ 194 (264)
|+...+=++++||||||||.+|..++.++- .=|++-. .++ .-..+|- .|..+..+-...
T Consensus 541 Gi~~PsGvLL~GPPGCGKTLlAKAVANEag-----~NFisVK---GPELlNkYVGE------------SErAVR~vFqRA 600 (802)
T KOG0733|consen 541 GIDAPSGVLLCGPPGCGKTLLAKAVANEAG-----ANFISVK---GPELLNKYVGE------------SERAVRQVFQRA 600 (802)
T ss_pred CCCCCCceEEeCCCCccHHHHHHHHhhhcc-----CceEeec---CHHHHHHHhhh------------HHHHHHHHHHHh
Confidence 465566699999999999999998887542 2233321 111 1111110 121222222222
Q ss_pred hcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHh
Q 024705 195 KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLL 260 (264)
Q Consensus 195 ~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~ 260 (264)
+...|.+|++|.+.++.++..-++ .....|.+.+.|.+|-..-.+.|+.||..+.-=+.+
T Consensus 601 R~saPCVIFFDEiDaL~p~R~~~~------s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiI 660 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDALVPRRSDEG------SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDII 660 (802)
T ss_pred hcCCCeEEEecchhhcCcccCCCC------chhHHHHHHHHHHHhcccccccceEEEeecCCCccc
Confidence 345799999999999997533222 235567788888888776677899999877644433
No 488
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.19 E-value=1.3e-05 Score=75.31 Aligned_cols=87 Identities=21% Similarity=0.344 Sum_probs=59.4
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhc--CCeEEEEecCCCCCH--H----HHHHcCCCccceeEeCCCCHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKL--GGYCAYLDVENALDP--S----LAEAMGIDAENLLIAQPDSAENLL 187 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~--g~~v~~~~~e~~~~~--~----~~~~~g~~~~~l~~~~~~~~ee~~ 187 (264)
.+++|.++.|+||+|+||||++.+++..+... +.+|.+++.|..... . +.+.+|+.. ....+..++.
T Consensus 346 ~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v-----~~a~d~~~L~ 420 (559)
T PRK12727 346 PLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAV-----HEADSAESLL 420 (559)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCcee-----EecCcHHHHH
Confidence 46789999999999999999999999887665 467999988753321 1 122233322 2233445555
Q ss_pred HHHHHHhhcCCccEEEEcCcccc
Q 024705 188 SVVDTLTKSGSIDVIVVDSVAAL 210 (264)
Q Consensus 188 ~~i~~~~~~~~~~~vvIDsl~~~ 210 (264)
..+..+ .+.++|+||.....
T Consensus 421 ~aL~~l---~~~DLVLIDTaG~s 440 (559)
T PRK12727 421 DLLERL---RDYKLVLIDTAGMG 440 (559)
T ss_pred HHHHHh---ccCCEEEecCCCcc
Confidence 555544 46899999988654
No 489
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=8.4e-06 Score=76.75 Aligned_cols=118 Identities=21% Similarity=0.298 Sum_probs=71.2
Q ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHh
Q 024705 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (264)
Q Consensus 115 gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~ 194 (264)
-|+.|..=+++.||||||||.||..++.++ +-+.+-++.-+ .. -|+. -.+-+.+.+.++..
T Consensus 218 lGv~PprGvLlHGPPGCGKT~lA~AiAgel---~vPf~~isApe-----iv--SGvS--------GESEkkiRelF~~A- 278 (802)
T KOG0733|consen 218 LGVRPPRGVLLHGPPGCGKTSLANAIAGEL---GVPFLSISAPE-----IV--SGVS--------GESEKKIRELFDQA- 278 (802)
T ss_pred cCCCCCCceeeeCCCCccHHHHHHHHhhhc---CCceEeecchh-----hh--cccC--------cccHHHHHHHHHHH-
Confidence 478887889999999999999999998865 22222222111 00 0111 12223444444443
Q ss_pred hcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhc--cCcEEEEEcccc
Q 024705 195 KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQ--SHTLIIFLNQVK 257 (264)
Q Consensus 195 ~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~--~g~tVi~i~h~~ 257 (264)
....|.+++||.+.++.++.+ ..+.+..+|.+++.|.-+-..-.+ .|..|++|.-.+
T Consensus 279 ~~~aPcivFiDeIDAI~pkRe------~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATn 337 (802)
T KOG0733|consen 279 KSNAPCIVFIDEIDAITPKRE------EAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATN 337 (802)
T ss_pred hccCCeEEEeecccccccchh------hHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCC
Confidence 346899999999999997432 123445666677766655433322 366777765443
No 490
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.18 E-value=5.1e-06 Score=69.49 Aligned_cols=48 Identities=8% Similarity=0.217 Sum_probs=32.6
Q ss_pred CCccEEEEcCccccccccccCCCcCCCCcHHHHH-HHHHHHHHHHHHHhccCcEEEEEcccchHh
Q 024705 197 GSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSR-IMTQALRKIHYSLCQSHTLIIFLNQVKVLL 260 (264)
Q Consensus 197 ~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r-~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~ 260 (264)
.+++++++|....-... ...+ .+.+.+.++. ++.+.+||+++|....+
T Consensus 138 ~~p~illlDEP~~~LD~-------------~~~~~~l~~~l~~~~---~~~~~~iiiitH~~~~~ 186 (204)
T cd03240 138 SNCGILALDEPTTNLDE-------------ENIEESLAEIIEERK---SQKNFQLIVITHDEELV 186 (204)
T ss_pred cCCCEEEEcCCccccCH-------------HHHHHHHHHHHHHHH---hccCCEEEEEEecHHHH
Confidence 57899999987766521 2333 4555665554 44588999999987654
No 491
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.18 E-value=2.4e-05 Score=69.34 Aligned_cols=45 Identities=24% Similarity=0.196 Sum_probs=39.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL 160 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~ 160 (264)
-..++.++.|.|+||+|||||+..++..+...|.++.+++.+...
T Consensus 30 ~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~ 74 (300)
T TIGR00750 30 YTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSS 74 (300)
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 445789999999999999999999999988889999999988554
No 492
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=98.18 E-value=1.1e-05 Score=85.30 Aligned_cols=60 Identities=23% Similarity=0.320 Sum_probs=42.2
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC--C-HHHHHHcCCCccceeEe
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL--D-PSLAEAMGIDAENLLIA 178 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~--~-~~~~~~~g~~~~~l~~~ 178 (264)
+++|+.+.|+|++|||||||+..+..-.. .+|.+ +++..... . ....+++++.+|+..++
T Consensus 1242 I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I-~IdG~di~~i~~~~lR~~is~IpQdp~LF 1304 (1490)
T TIGR01271 1242 VEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEI-QIDGVSWNSVTLQTWRKAFGVIPQKVFIF 1304 (1490)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEE-EECCEEcccCCHHHHHhceEEEeCCCccC
Confidence 78999999999999999999988888764 45544 55543221 1 24556677777765443
No 493
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=1.7e-05 Score=73.95 Aligned_cols=60 Identities=25% Similarity=0.463 Sum_probs=42.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC---HHHHHHcCCCccceeE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD---PSLAEAMGIDAENLLI 177 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~---~~~~~~~g~~~~~l~~ 177 (264)
-+++|+-+.|.|+|||||||++..+..-.. ..|. ++++.-+-.. ....+.+|+.||+-.+
T Consensus 374 ~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~-I~IdG~dik~~~~~SlR~~Ig~VPQd~~L 436 (591)
T KOG0057|consen 374 TIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGS-ILIDGQDIKEVSLESLRQSIGVVPQDSVL 436 (591)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCc-EEECCeeHhhhChHHhhhheeEeCCcccc
Confidence 589999999999999999998887776555 4444 4555433221 1456678988885433
No 494
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=98.17 E-value=1.1e-05 Score=74.77 Aligned_cols=157 Identities=15% Similarity=0.168 Sum_probs=87.2
Q ss_pred CCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH-HH-HHHcCCC--
Q 024705 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP-SL-AEAMGID-- 171 (264)
Q Consensus 96 ~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~-~~-~~~~g~~-- 171 (264)
...+.+.||+..+|.++. +.+|+.+.|.|++|+|||||+..++..... ...++.+..+...+- .. .+.++-.
T Consensus 137 ~i~~~l~tg~~vid~l~~---i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~-~~gvI~~~Gerg~ev~e~~~~~l~~~~l 212 (438)
T PRK07721 137 PIREPMEVGVRAIDSLLT---VGKGQRVGIFAGSGVGKSTLMGMIARNTSA-DLNVIALIGERGREVREFIERDLGPEGL 212 (438)
T ss_pred Ccccccccchhhhheeee---ecCCcEEEEECCCCCCHHHHHHHHhcccCC-CeEEEEEEecCCccHHHHHHhhcChhhh
Confidence 345678999999999975 899999999999999999998777665433 333444433333221 11 1112211
Q ss_pred ccceeEeC--CCC-HHHH------HHHHHHHhhcCCccEEEEcCcccccccc-cc---CCCcC--CCCcHHHHHHHHHHH
Q 024705 172 AENLLIAQ--PDS-AENL------LSVVDTLTKSGSIDVIVVDSVAALIPKC-EI---GVPIN--GMYSDAQSRIMTQAL 236 (264)
Q Consensus 172 ~~~l~~~~--~~~-~ee~------~~~i~~~~~~~~~~~vvIDsl~~~~~~~-~~---~~~~~--~~~~~~q~r~i~~~L 236 (264)
.+.+.+.. ..+ ...+ ....+.....++--++++||++.+.... +. .+++. ..+++.....+.+.+
T Consensus 213 ~r~v~vv~~~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ll 292 (438)
T PRK07721 213 KRSIVVVATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLL 292 (438)
T ss_pred cCeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHH
Confidence 11222221 111 1211 1122333344555578899999876311 11 12322 123344444555555
Q ss_pred HHHHHHHhccCc-----EEEEEcccch
Q 024705 237 RKIHYSLCQSHT-----LIIFLNQVKV 258 (264)
Q Consensus 237 ~~l~~~l~~~g~-----tVi~i~h~~~ 258 (264)
.++.. .+.|. ||++.+|..+
T Consensus 293 er~~~--~~~GsIT~~~TVlv~~hdm~ 317 (438)
T PRK07721 293 ERTGT--NASGSITAFYTVLVDGDDMN 317 (438)
T ss_pred HHhcC--CCCCCeeeEEEEEEECCCCC
Confidence 55531 13575 9999999765
No 495
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.17 E-value=1.7e-05 Score=80.26 Aligned_cols=58 Identities=22% Similarity=0.306 Sum_probs=40.1
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH---HHHHHcCCCccce
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP---SLAEAMGIDAENL 175 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~---~~~~~~g~~~~~l 175 (264)
+++|+.+.|.||+||||||+...+..-..+ ..+-++++.+.-..- .....+|+..|..
T Consensus 376 i~~G~~valVG~SGsGKST~i~LL~RfydP-~~G~V~idG~di~~~~~~~lr~~iglV~QeP 436 (1228)
T KOG0055|consen 376 IPSGQTVALVGPSGSGKSTLIQLLARFYDP-TSGEVLIDGEDIRNLNLKWLRSQIGLVSQEP 436 (1228)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHHhcCC-CCceEEEcCccchhcchHHHHhhcCeeeech
Confidence 799999999999999999965555544444 444567776554332 3456788776653
No 496
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.17 E-value=2.7e-05 Score=73.22 Aligned_cols=120 Identities=18% Similarity=0.188 Sum_probs=67.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~ 195 (264)
|++...-++++||||+|||+++..++... +.+.+.++...-. ...+| ..+..+..+-...+
T Consensus 255 gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~~~l~~~~l~----~~~vG------------ese~~l~~~f~~A~ 315 (489)
T CHL00195 255 GLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPLLRLDVGKLF----GGIVG------------ESESRMRQMIRIAE 315 (489)
T ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEEEEEhHHhc----ccccC------------hHHHHHHHHHHHHH
Confidence 66777779999999999999999998865 4444444421100 00011 11222222222233
Q ss_pred cCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhh
Q 024705 196 SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLL 261 (264)
Q Consensus 196 ~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~ 261 (264)
...+.+++||.+..++...... ..++...+.+..++..+.. ++.++.||.+++..+.++
T Consensus 316 ~~~P~IL~IDEID~~~~~~~~~-----~d~~~~~rvl~~lL~~l~~--~~~~V~vIaTTN~~~~Ld 374 (489)
T CHL00195 316 ALSPCILWIDEIDKAFSNSESK-----GDSGTTNRVLATFITWLSE--KKSPVFVVATANNIDLLP 374 (489)
T ss_pred hcCCcEEEehhhhhhhccccCC-----CCchHHHHHHHHHHHHHhc--CCCceEEEEecCChhhCC
Confidence 4578999999999887421111 1223444545555554431 234677777776554443
No 497
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=4.9e-06 Score=78.85 Aligned_cols=121 Identities=21% Similarity=0.218 Sum_probs=77.5
Q ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHh
Q 024705 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (264)
Q Consensus 115 gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~ 194 (264)
=|+.+..=++++||||||||+++..++..+. -.-+++...+- ....+| ..|..+..+-...
T Consensus 463 ~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~---~nFlsvkgpEL----~sk~vG------------eSEr~ir~iF~kA 523 (693)
T KOG0730|consen 463 FGISPPKGVLLYGPPGCGKTLLAKALANEAG---MNFLSVKGPEL----FSKYVG------------ESERAIREVFRKA 523 (693)
T ss_pred hcCCCCceEEEECCCCcchHHHHHHHhhhhc---CCeeeccCHHH----HHHhcC------------chHHHHHHHHHHH
Confidence 3577778899999999999999999988653 23333332221 111122 1233333332333
Q ss_pred hcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHh
Q 024705 195 KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLL 260 (264)
Q Consensus 195 ~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~ 260 (264)
++..+.++++|.+.++... ..++. .+.+-|.+++.|.++-..-...++.||.-+.--+.+
T Consensus 524 R~~aP~IiFfDEiDsi~~~--R~g~~----~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~I 583 (693)
T KOG0730|consen 524 RQVAPCIIFFDEIDALAGS--RGGSS----SGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMI 583 (693)
T ss_pred hhcCCeEEehhhHHhHhhc--cCCCc----cchHHHHHHHHHHHcccccccCcEEEEeccCChhhc
Confidence 3457799999999998742 22222 256778899999999877777788888766544443
No 498
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.16 E-value=1.9e-05 Score=68.80 Aligned_cols=88 Identities=10% Similarity=0.214 Sum_probs=62.7
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH------HHHHHcCCCccceeEeCCCCHHHHHHHHHH
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP------SLAEAMGIDAENLLIAQPDSAENLLSVVDT 192 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~------~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~ 192 (264)
+|+.+.+.|++|+||||++..++..+...+.++.+++.+..... .+++.++++ +....+.+++...+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~-----~~~~~~~~~l~~~l~~ 148 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFE-----VIAVRDEAAMTRALTY 148 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCce-----EEecCCHHHHHHHHHH
Confidence 66899999999999999999999988777889999998754321 122333332 2223455666666655
Q ss_pred HhhcCCccEEEEcCccccc
Q 024705 193 LTKSGSIDVIVVDSVAALI 211 (264)
Q Consensus 193 ~~~~~~~~~vvIDsl~~~~ 211 (264)
+....+.++|+||......
T Consensus 149 l~~~~~~D~ViIDt~Gr~~ 167 (270)
T PRK06731 149 FKEEARVDYILIDTAGKNY 167 (270)
T ss_pred HHhcCCCCEEEEECCCCCc
Confidence 5444578999999887664
No 499
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=98.16 E-value=1e-05 Score=79.18 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=28.7
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCe
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGY 150 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~ 150 (264)
-+++|+.+.|.||||||||||+..++......+|.
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~ 508 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGR 508 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCe
Confidence 37899999999999999999998887765444443
No 500
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.15 E-value=1.2e-05 Score=72.78 Aligned_cols=86 Identities=23% Similarity=0.286 Sum_probs=65.7
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHh--hcCCeEEEEecCCCCC----H--HHHHHcCCCccceeEeCCCCHHHHHHH
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQ--KLGGYCAYLDVENALD----P--SLAEAMGIDAENLLIAQPDSAENLLSV 189 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~--~~g~~v~~~~~e~~~~----~--~~~~~~g~~~~~l~~~~~~~~ee~~~~ 189 (264)
.++.++.+.||.|+||||.+..+++... ....+|.+++.|.-.- + .+++-+|++..- ..++.++...
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~v-----v~~~~el~~a 275 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEV-----VYSPKELAEA 275 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEE-----ecCHHHHHHH
Confidence 3489999999999999999999999887 4567899999876422 2 356677777544 4567888877
Q ss_pred HHHHhhcCCccEEEEcCccccc
Q 024705 190 VDTLTKSGSIDVIVVDSVAALI 211 (264)
Q Consensus 190 i~~~~~~~~~~~vvIDsl~~~~ 211 (264)
+..+ ..+++|+||....-.
T Consensus 276 i~~l---~~~d~ILVDTaGrs~ 294 (407)
T COG1419 276 IEAL---RDCDVILVDTAGRSQ 294 (407)
T ss_pred HHHh---hcCCEEEEeCCCCCc
Confidence 7766 467999999876443
Done!