Query 024705
Match_columns 264
No_of_seqs 349 out of 2662
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 13:00:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024705.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024705hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hr8_A Protein RECA; alpha and 100.0 5.3E-32 1.8E-36 242.3 22.0 200 63-262 4-203 (356)
2 2zr9_A Protein RECA, recombina 100.0 6.4E-31 2.2E-35 235.6 20.7 198 64-262 6-203 (349)
3 1u94_A RECA protein, recombina 100.0 1.7E-30 5.8E-35 233.2 20.2 198 65-263 9-206 (356)
4 1xp8_A RECA protein, recombina 100.0 4.7E-30 1.6E-34 231.0 22.1 200 63-263 18-217 (366)
5 3io5_A Recombination and repai 100.0 1.1E-30 3.8E-35 228.1 17.3 165 97-263 3-177 (333)
6 3cmu_A Protein RECA, recombina 100.0 1.9E-29 6.7E-34 261.8 21.3 198 65-263 1721-1918(2050)
7 3cmw_A Protein RECA, recombina 100.0 4.7E-29 1.6E-33 256.8 21.3 199 64-263 1376-1574(1706)
8 3cmw_A Protein RECA, recombina 100.0 2E-27 6.9E-32 244.7 20.8 199 64-263 328-526 (1706)
9 3cmu_A Protein RECA, recombina 100.0 2.5E-27 8.4E-32 246.2 21.3 198 65-263 329-526 (2050)
10 2z43_A DNA repair and recombin 99.9 6.2E-25 2.1E-29 194.9 14.8 190 64-262 56-263 (324)
11 1v5w_A DMC1, meiotic recombina 99.9 1E-24 3.5E-29 195.0 13.2 189 65-262 72-279 (343)
12 2i1q_A DNA repair and recombin 99.9 4.4E-24 1.5E-28 189.1 15.2 192 62-262 45-264 (322)
13 4a1f_A DNAB helicase, replicat 99.9 2.2E-22 7.5E-27 178.8 15.9 156 97-263 25-212 (338)
14 1n0w_A DNA repair protein RAD5 99.9 4.2E-22 1.4E-26 168.4 16.1 161 97-262 2-179 (243)
15 3lda_A DNA repair protein RAD5 99.9 4.4E-22 1.5E-26 180.9 16.4 159 97-260 156-331 (400)
16 3bh0_A DNAB-like replicative h 99.9 7.8E-22 2.7E-26 174.3 17.5 155 97-262 47-236 (315)
17 2dr3_A UPF0273 protein PH0284; 99.9 1.1E-21 3.6E-26 166.1 14.1 146 99-259 3-175 (247)
18 3bgw_A DNAB-like replicative h 99.9 4.8E-21 1.6E-25 176.6 19.2 156 97-263 176-366 (444)
19 2zts_A Putative uncharacterize 99.9 4.3E-22 1.5E-26 168.8 11.2 151 96-259 7-184 (251)
20 1pzn_A RAD51, DNA repair and r 99.9 5.7E-21 1.9E-25 171.1 16.6 186 67-261 82-290 (349)
21 2q6t_A DNAB replication FORK h 99.8 1.9E-20 6.5E-25 172.8 17.0 158 97-262 179-368 (444)
22 2cvh_A DNA repair and recombin 99.8 4.2E-20 1.4E-24 153.8 15.1 147 100-259 1-158 (220)
23 1q57_A DNA primase/helicase; d 99.8 2.4E-20 8.3E-25 174.6 15.0 152 96-258 219-405 (503)
24 2r6a_A DNAB helicase, replicat 99.8 6.4E-20 2.2E-24 169.7 16.5 156 97-262 182-369 (454)
25 2w0m_A SSO2452; RECA, SSPF, un 99.8 4.8E-20 1.6E-24 154.4 14.1 144 99-257 3-168 (235)
26 4a74_A DNA repair and recombin 99.8 7E-20 2.4E-24 153.4 14.8 158 97-259 3-182 (231)
27 2ehv_A Hypothetical protein PH 99.8 1.5E-19 5E-24 153.3 11.3 151 97-260 8-185 (251)
28 1nlf_A Regulatory protein REPA 99.7 3.2E-18 1.1E-22 148.4 9.2 147 98-260 10-184 (279)
29 1cr0_A DNA primase/helicase; R 99.7 5.3E-17 1.8E-21 141.7 16.8 150 96-257 12-197 (296)
30 1tf7_A KAIC; homohexamer, hexa 99.7 4.1E-16 1.4E-20 146.6 16.1 147 97-257 259-417 (525)
31 3bs4_A Uncharacterized protein 99.7 5.2E-16 1.8E-20 132.9 13.5 73 100-173 2-76 (260)
32 1tf7_A KAIC; homohexamer, hexa 99.6 1.2E-14 4E-19 136.7 13.9 151 97-260 17-188 (525)
33 2vhj_A Ntpase P4, P4; non- hyd 99.6 2.5E-15 8.5E-20 131.8 5.5 130 99-256 104-235 (331)
34 3tui_C Methionine import ATP-b 99.3 8E-12 2.7E-16 111.8 8.8 133 116-264 50-231 (366)
35 3rlf_A Maltose/maltodextrin im 99.3 7E-12 2.4E-16 112.8 8.0 129 116-263 25-200 (381)
36 4g1u_C Hemin import ATP-bindin 99.3 1.4E-11 4.8E-16 106.0 9.5 132 117-264 34-215 (266)
37 3fvq_A Fe(3+) IONS import ATP- 99.3 8.1E-12 2.8E-16 111.6 7.5 129 116-263 26-205 (359)
38 1vpl_A ABC transporter, ATP-bi 99.2 3.1E-11 1.1E-15 103.3 9.0 72 116-187 37-109 (256)
39 3tif_A Uncharacterized ABC tra 99.2 3.8E-11 1.3E-15 101.4 9.1 72 116-187 27-104 (235)
40 1z47_A CYSA, putative ABC-tran 99.2 1.9E-11 6.5E-16 109.1 7.4 71 116-187 37-108 (355)
41 2yyz_A Sugar ABC transporter, 99.2 2.5E-11 8.4E-16 108.6 8.1 70 116-186 25-95 (359)
42 3gfo_A Cobalt import ATP-bindi 99.2 2.6E-11 8.8E-16 104.8 7.7 131 116-264 30-211 (275)
43 2it1_A 362AA long hypothetical 99.2 2.8E-11 9.4E-16 108.4 8.2 71 116-187 25-96 (362)
44 2olj_A Amino acid ABC transpor 99.2 4.3E-11 1.5E-15 102.7 9.0 72 116-187 46-121 (263)
45 3d31_A Sulfate/molybdate ABC t 99.2 7.6E-12 2.6E-16 111.5 4.2 73 116-189 22-95 (348)
46 2pcj_A ABC transporter, lipopr 99.2 5.1E-11 1.7E-15 99.9 8.9 72 116-187 26-103 (224)
47 1v43_A Sugar-binding transport 99.2 3.3E-11 1.1E-15 108.3 8.1 131 116-263 33-208 (372)
48 2b8t_A Thymidine kinase; deoxy 99.2 1.8E-10 6.1E-15 96.4 10.9 117 118-259 10-128 (223)
49 2onk_A Molybdate/tungstate ABC 99.2 3.8E-11 1.3E-15 101.7 6.6 70 116-186 21-90 (240)
50 1g29_1 MALK, maltose transport 99.1 3.4E-11 1.2E-15 108.2 6.1 71 116-187 25-102 (372)
51 1oxx_K GLCV, glucose, ABC tran 99.1 2.4E-11 8.3E-16 108.5 3.4 37 116-152 27-63 (353)
52 1b0u_A Histidine permease; ABC 99.1 2.4E-10 8.3E-15 98.0 9.5 73 116-188 28-115 (262)
53 2qi9_C Vitamin B12 import ATP- 99.1 1.4E-10 4.7E-15 98.8 7.4 128 116-263 22-199 (249)
54 1g6h_A High-affinity branched- 99.1 1.7E-10 5.9E-15 98.6 8.0 60 116-175 29-91 (257)
55 1ji0_A ABC transporter; ATP bi 99.1 2.2E-11 7.5E-16 103.2 0.9 72 116-187 28-102 (240)
56 1sgw_A Putative ABC transporte 99.1 2.2E-11 7.7E-16 101.4 0.6 71 116-189 31-101 (214)
57 2nq2_C Hypothetical ABC transp 99.0 2.6E-10 8.8E-15 97.4 6.6 130 116-263 27-195 (253)
58 2ff7_A Alpha-hemolysin translo 99.0 9.7E-10 3.3E-14 93.4 8.7 61 116-177 31-94 (247)
59 2ixe_A Antigen peptide transpo 99.0 4.5E-10 1.6E-14 96.8 6.7 62 116-178 41-105 (271)
60 2ihy_A ABC transporter, ATP-bi 99.0 2.9E-10 9.9E-15 98.4 4.7 38 116-153 43-80 (279)
61 2yz2_A Putative ABC transporte 99.0 9.9E-11 3.4E-15 100.6 0.9 58 116-174 29-86 (266)
62 2d2e_A SUFC protein; ABC-ATPas 98.9 7.6E-10 2.6E-14 94.2 5.9 73 116-189 25-103 (250)
63 2kjq_A DNAA-related protein; s 98.9 5.3E-09 1.8E-13 82.0 10.2 89 119-256 35-124 (149)
64 3nh6_A ATP-binding cassette SU 98.9 1.3E-09 4.5E-14 95.4 6.5 62 116-178 76-140 (306)
65 3ec2_A DNA replication protein 98.9 1.3E-08 4.5E-13 81.6 11.9 109 116-257 34-143 (180)
66 2ghi_A Transport protein; mult 98.8 4.8E-09 1.6E-13 89.8 6.3 61 116-178 42-105 (260)
67 2zu0_C Probable ATP-dependent 98.8 8E-09 2.7E-13 88.7 7.1 73 116-189 42-120 (267)
68 1mv5_A LMRA, multidrug resista 98.8 4.5E-09 1.5E-13 89.0 5.2 38 116-153 24-61 (243)
69 3ozx_A RNAse L inhibitor; ATP 98.8 2.8E-08 9.6E-13 93.4 10.2 130 117-264 291-453 (538)
70 3j16_B RLI1P; ribosome recycli 98.8 5.9E-08 2E-12 92.4 12.5 131 115-263 373-534 (608)
71 1yqt_A RNAse L inhibitor; ATP- 98.7 9.8E-09 3.4E-13 96.6 6.5 130 117-264 309-469 (538)
72 4b4t_J 26S protease regulatory 98.7 6.6E-08 2.3E-12 87.3 11.4 123 116-260 178-300 (405)
73 3b5x_A Lipid A export ATP-bind 98.7 3.7E-08 1.3E-12 93.5 10.0 62 116-177 365-428 (582)
74 2pjz_A Hypothetical protein ST 98.7 3.5E-09 1.2E-13 90.8 2.7 69 116-189 27-96 (263)
75 4gp7_A Metallophosphoesterase; 98.7 4.4E-09 1.5E-13 84.1 3.1 23 117-139 6-28 (171)
76 1yqt_A RNAse L inhibitor; ATP- 98.7 7.6E-08 2.6E-12 90.5 11.6 51 197-264 175-225 (538)
77 3bk7_A ABC transporter ATP-bin 98.7 8.2E-08 2.8E-12 91.5 11.7 129 117-263 379-538 (607)
78 3qf4_B Uncharacterized ABC tra 98.7 2.7E-08 9.3E-13 94.7 8.3 60 117-177 378-440 (598)
79 4b4t_L 26S protease subunit RP 98.7 1.3E-07 4.5E-12 86.4 12.4 125 115-261 210-334 (437)
80 3b60_A Lipid A export ATP-bind 98.7 3.8E-08 1.3E-12 93.4 9.1 61 117-178 366-429 (582)
81 4b4t_K 26S protease regulatory 98.7 1.1E-07 3.8E-12 86.7 11.6 123 116-260 202-324 (428)
82 4b4t_I 26S protease regulatory 98.7 2.4E-07 8E-12 84.2 13.2 125 115-261 211-335 (437)
83 3e70_C DPA, signal recognition 98.7 3.8E-08 1.3E-12 86.9 7.9 54 118-171 127-186 (328)
84 3ozx_A RNAse L inhibitor; ATP 98.7 2.9E-08 9.9E-13 93.3 7.3 34 116-149 21-54 (538)
85 2orw_A Thymidine kinase; TMTK, 98.7 3.5E-08 1.2E-12 80.0 6.7 110 119-258 2-114 (184)
86 3gd7_A Fusion complex of cysti 98.7 2.6E-08 8.9E-13 89.9 6.4 61 116-178 43-106 (390)
87 1rj9_A FTSY, signal recognitio 98.6 7.2E-08 2.5E-12 84.3 8.7 41 119-159 101-141 (304)
88 2pze_A Cystic fibrosis transme 98.6 2.1E-08 7E-13 84.2 5.0 35 116-150 30-64 (229)
89 4a82_A Cystic fibrosis transme 98.6 2.5E-08 8.4E-13 94.7 5.9 61 117-178 364-427 (578)
90 3qf4_A ABC transporter, ATP-bi 98.6 2.8E-08 9.7E-13 94.4 6.1 61 117-178 366-429 (587)
91 3j16_B RLI1P; ribosome recycli 98.6 3.7E-08 1.3E-12 93.8 6.8 34 117-150 100-133 (608)
92 3bk7_A ABC transporter ATP-bin 98.6 1.8E-07 6.1E-12 89.1 11.3 50 197-263 245-294 (607)
93 2yl4_A ATP-binding cassette SU 98.6 6.3E-08 2.1E-12 92.2 8.0 61 117-178 367-430 (595)
94 1j8m_F SRP54, signal recogniti 98.6 2.5E-07 8.4E-12 80.6 11.0 107 101-210 73-192 (297)
95 2cbz_A Multidrug resistance-as 98.6 3.1E-08 1.1E-12 83.5 4.9 36 116-151 27-62 (237)
96 4b4t_M 26S protease regulatory 98.6 1.5E-07 5.2E-12 85.9 9.5 125 115-261 210-334 (434)
97 2yhs_A FTSY, cell division pro 98.6 1.2E-07 4.3E-12 87.6 8.7 91 117-211 290-388 (503)
98 3h4m_A Proteasome-activating n 98.6 3.9E-07 1.3E-11 78.2 10.9 124 116-261 47-170 (285)
99 3kl4_A SRP54, signal recogniti 98.6 1.2E-06 4E-11 80.1 14.3 101 106-209 77-190 (433)
100 4b4t_H 26S protease regulatory 98.5 3.7E-07 1.3E-11 83.6 10.8 124 115-260 238-361 (467)
101 1c9k_A COBU, adenosylcobinamid 98.5 1.5E-07 5.3E-12 75.8 6.9 83 122-213 1-88 (180)
102 2px0_A Flagellar biosynthesis 98.5 1.1E-06 3.8E-11 76.4 12.8 82 118-207 103-191 (296)
103 2eyu_A Twitching motility prot 98.5 4.9E-07 1.7E-11 77.3 10.0 40 117-156 22-62 (261)
104 2bbs_A Cystic fibrosis transme 98.5 6.7E-08 2.3E-12 83.9 4.5 34 116-149 60-93 (290)
105 3jvv_A Twitching mobility prot 98.5 4.4E-07 1.5E-11 81.0 9.6 113 118-260 121-234 (356)
106 3b9q_A Chloroplast SRP recepto 98.5 3.4E-07 1.2E-11 79.9 8.5 43 117-159 97-139 (302)
107 3b85_A Phosphate starvation-in 98.5 5.9E-08 2E-12 80.2 3.3 35 116-151 18-52 (208)
108 2j9r_A Thymidine kinase; TK1, 98.5 4.2E-07 1.4E-11 75.1 8.2 111 118-258 26-139 (214)
109 2qby_A CDC6 homolog 1, cell di 98.5 1.2E-06 4.1E-11 77.6 11.7 90 118-211 43-141 (386)
110 1xx6_A Thymidine kinase; NESG, 98.4 7.3E-07 2.5E-11 72.6 8.8 110 118-257 6-118 (191)
111 2og2_A Putative signal recogni 98.4 5.6E-07 1.9E-11 80.3 8.3 43 117-159 154-196 (359)
112 1xwi_A SKD1 protein; VPS4B, AA 98.4 2.4E-06 8.2E-11 75.1 12.1 119 115-257 40-159 (322)
113 3ux8_A Excinuclease ABC, A sub 98.4 1.1E-06 3.7E-11 84.8 10.7 22 116-137 40-61 (670)
114 2orv_A Thymidine kinase; TP4A 98.4 2.3E-06 8E-11 71.4 11.3 109 118-258 17-127 (234)
115 3g5u_A MCG1178, multidrug resi 98.4 3.9E-07 1.3E-11 93.8 7.9 62 117-179 413-477 (1284)
116 1vma_A Cell division protein F 98.4 1.5E-06 5E-11 76.0 10.1 89 118-209 102-197 (306)
117 1fnn_A CDC6P, cell division co 98.4 3.2E-06 1.1E-10 75.2 12.4 85 122-210 46-137 (389)
118 2qz4_A Paraplegin; AAA+, SPG7, 98.4 2.3E-06 8E-11 72.1 10.9 78 116-212 35-112 (262)
119 3dm5_A SRP54, signal recogniti 98.4 5.9E-06 2E-10 75.5 14.0 90 119-210 99-194 (443)
120 3bos_A Putative DNA replicatio 98.3 1.5E-06 5.2E-11 71.9 8.9 49 107-158 42-90 (242)
121 3cf0_A Transitional endoplasmi 98.3 2.2E-06 7.6E-11 74.4 10.0 124 115-261 44-168 (301)
122 1lv7_A FTSH; alpha/beta domain 98.3 5.4E-06 1.9E-10 70.0 11.6 117 122-260 47-163 (257)
123 3thx_A DNA mismatch repair pro 98.3 1.2E-06 4.2E-11 87.0 8.1 27 117-143 659-685 (934)
124 2v1u_A Cell division control p 98.3 7.6E-06 2.6E-10 72.5 12.4 90 118-211 42-143 (387)
125 2ce7_A Cell division protein F 98.3 7.8E-06 2.7E-10 75.6 12.7 121 117-261 48-168 (476)
126 2z4s_A Chromosomal replication 98.3 7.1E-06 2.4E-10 75.2 12.4 105 120-256 130-236 (440)
127 1l8q_A Chromosomal replication 98.3 1.6E-05 5.4E-10 69.5 14.1 40 118-157 35-74 (324)
128 3e2i_A Thymidine kinase; Zn-bi 98.3 2.5E-06 8.4E-11 70.5 8.2 110 116-255 24-136 (219)
129 2ewv_A Twitching motility prot 98.3 2.7E-06 9.2E-11 76.3 9.1 112 117-258 133-245 (372)
130 1w4r_A Thymidine kinase; type 98.3 3.9E-06 1.3E-10 68.3 9.2 110 118-259 18-129 (195)
131 2r8r_A Sensor protein; KDPD, P 98.3 3.6E-06 1.2E-10 70.1 9.0 84 119-210 4-96 (228)
132 1sq5_A Pantothenate kinase; P- 98.3 5.2E-06 1.8E-10 72.5 10.5 94 117-211 77-197 (308)
133 1ye8_A Protein THEP1, hypothet 98.2 2.8E-06 9.7E-11 68.2 8.0 23 122-144 2-24 (178)
134 1zu4_A FTSY; GTPase, signal re 98.2 5.2E-06 1.8E-10 72.9 10.2 94 117-211 102-204 (320)
135 3b9p_A CG5977-PA, isoform A; A 98.2 1E-05 3.6E-10 69.6 11.9 75 119-212 53-127 (297)
136 3eie_A Vacuolar protein sortin 98.2 4.1E-06 1.4E-10 73.4 9.4 79 115-212 46-124 (322)
137 1jbk_A CLPB protein; beta barr 98.2 8E-06 2.7E-10 64.7 10.4 81 119-212 42-129 (195)
138 3cf2_A TER ATPase, transitiona 98.2 1.1E-05 3.8E-10 78.8 13.2 122 115-261 233-354 (806)
139 2w58_A DNAI, primosome compone 98.2 6.1E-06 2.1E-10 67.0 9.6 37 121-157 55-91 (202)
140 2i3b_A HCR-ntpase, human cance 98.2 1.5E-07 5E-12 76.7 -0.2 26 120-145 1-26 (189)
141 1ls1_A Signal recognition part 98.2 6.4E-06 2.2E-10 71.5 10.1 87 119-208 97-190 (295)
142 3thx_B DNA mismatch repair pro 98.2 1.3E-06 4.6E-11 86.5 6.4 27 117-143 670-696 (918)
143 2pt7_A CAG-ALFA; ATPase, prote 98.2 5.7E-07 1.9E-11 79.5 3.1 109 117-258 168-276 (330)
144 2o8b_B DNA mismatch repair pro 98.2 2E-05 6.9E-10 79.1 14.7 125 120-262 789-917 (1022)
145 3t15_A Ribulose bisphosphate c 98.2 2.8E-06 9.7E-11 73.6 7.5 83 115-212 31-113 (293)
146 2iw3_A Elongation factor 3A; a 98.2 2.9E-06 9.9E-11 84.4 8.4 26 117-142 458-483 (986)
147 4f4c_A Multidrug resistance pr 98.2 1.4E-06 5E-11 89.8 6.4 60 116-176 440-502 (1321)
148 1oft_A SULA, hypothetical prot 98.2 3E-05 1E-09 60.9 12.4 108 98-205 22-132 (161)
149 1sxj_E Activator 1 40 kDa subu 98.2 8.3E-06 2.9E-10 71.9 10.1 26 123-148 39-64 (354)
150 2ffh_A Protein (FFH); SRP54, s 98.2 1.1E-05 3.9E-10 73.4 10.9 90 119-210 97-192 (425)
151 3g5u_A MCG1178, multidrug resi 98.2 8.7E-07 3E-11 91.2 4.0 60 117-177 1056-1118(1284)
152 2qp9_X Vacuolar protein sortin 98.2 1.4E-05 4.6E-10 71.2 11.2 79 115-212 79-157 (355)
153 2iw3_A Elongation factor 3A; a 98.1 2.4E-06 8.2E-11 85.0 6.6 35 117-151 696-730 (986)
154 4f4c_A Multidrug resistance pr 98.1 8.2E-07 2.8E-11 91.6 3.4 59 117-176 1102-1163(1321)
155 2qgz_A Helicase loader, putati 98.1 2.1E-05 7.2E-10 68.6 11.8 38 120-157 152-190 (308)
156 2npi_A Protein CLP1; CLP1-PCF1 98.1 2.3E-06 7.7E-11 78.9 5.6 40 117-156 135-175 (460)
157 2p65_A Hypothetical protein PF 98.1 2.7E-05 9.2E-10 61.5 11.1 80 119-212 42-129 (187)
158 2v3c_C SRP54, signal recogniti 98.1 6.3E-06 2.1E-10 75.4 8.1 100 107-211 80-193 (432)
159 4fcw_A Chaperone protein CLPB; 98.1 1.8E-05 6E-10 68.4 10.5 85 120-211 47-132 (311)
160 2x8a_A Nuclear valosin-contain 98.1 1.9E-05 6.5E-10 67.7 10.0 75 117-212 43-117 (274)
161 2chg_A Replication factor C sm 98.1 4.2E-05 1.4E-09 61.9 11.5 68 123-211 41-115 (226)
162 2qm8_A GTPase/ATPase; G protei 98.1 4.2E-06 1.4E-10 74.1 5.7 43 116-158 51-93 (337)
163 1zp6_A Hypothetical protein AT 98.0 3.1E-06 1.1E-10 67.9 4.2 39 116-157 5-43 (191)
164 1wb9_A DNA mismatch repair pro 98.0 1.2E-05 4.1E-10 78.8 8.8 28 118-145 605-632 (800)
165 3vfd_A Spastin; ATPase, microt 98.0 5.5E-05 1.9E-09 67.9 12.4 76 118-212 146-221 (389)
166 3d8b_A Fidgetin-like protein 1 98.0 3.3E-05 1.1E-09 68.7 10.7 76 118-212 115-190 (357)
167 3ice_A Transcription terminati 98.0 1.8E-05 6.2E-10 70.9 8.7 107 98-211 155-274 (422)
168 3hu3_A Transitional endoplasmi 98.0 1.7E-05 5.9E-10 73.6 8.9 120 116-260 234-353 (489)
169 2qby_B CDC6 homolog 3, cell di 98.0 3E-05 1E-09 68.8 9.9 87 120-211 45-146 (384)
170 2xxa_A Signal recognition part 98.0 3.7E-05 1.3E-09 70.3 10.5 85 120-209 100-194 (433)
171 3c8u_A Fructokinase; YP_612366 98.0 8.8E-06 3E-10 66.6 5.6 42 117-158 19-60 (208)
172 2zan_A Vacuolar protein sortin 98.0 8.3E-06 2.9E-10 74.8 6.0 80 115-212 162-241 (444)
173 2j37_W Signal recognition part 97.9 7.5E-05 2.6E-09 69.4 12.3 102 106-211 81-196 (504)
174 3n70_A Transport activator; si 97.9 1.2E-05 4.1E-10 62.0 5.9 38 119-157 23-60 (145)
175 1htw_A HI0065; nucleotide-bind 97.9 4.7E-06 1.6E-10 65.7 3.6 36 116-152 29-64 (158)
176 1ypw_A Transitional endoplasmi 97.9 2.3E-05 7.9E-10 77.0 9.2 121 116-261 234-354 (806)
177 2obl_A ESCN; ATPase, hydrolase 97.9 6.9E-06 2.4E-10 73.0 4.8 46 98-146 52-97 (347)
178 3ux8_A Excinuclease ABC, A sub 97.9 0.00012 4E-09 70.5 13.6 56 188-260 553-609 (670)
179 1ewq_A DNA mismatch repair pro 97.9 3E-05 1E-09 75.6 9.3 26 120-145 576-601 (765)
180 4aby_A DNA repair protein RECN 97.9 3.4E-05 1.1E-09 69.7 9.1 28 116-144 57-84 (415)
181 3syl_A Protein CBBX; photosynt 97.9 0.00014 4.7E-09 62.7 12.6 77 117-212 64-144 (309)
182 2r6f_A Excinuclease ABC subuni 97.9 4.9E-05 1.7E-09 75.3 10.8 25 117-141 647-671 (972)
183 4dzz_A Plasmid partitioning pr 97.9 5.5E-05 1.9E-09 61.1 9.5 84 122-210 3-87 (206)
184 1g5t_A COB(I)alamin adenosyltr 97.9 9.1E-05 3.1E-09 60.3 10.6 92 120-211 28-133 (196)
185 3uie_A Adenylyl-sulfate kinase 97.9 1.1E-05 3.7E-10 65.6 5.1 41 117-157 22-62 (200)
186 1rz3_A Hypothetical protein rb 97.9 2.6E-05 8.8E-10 63.5 6.9 43 116-158 18-60 (201)
187 2ygr_A Uvrabc system protein A 97.9 5.1E-05 1.8E-09 75.4 10.2 25 117-141 665-689 (993)
188 1ixz_A ATP-dependent metallopr 97.8 3.3E-05 1.1E-09 65.0 7.4 35 116-155 47-81 (254)
189 2pez_A Bifunctional 3'-phospho 97.8 1.6E-05 5.3E-10 63.4 5.0 39 118-156 3-41 (179)
190 2gza_A Type IV secretion syste 97.8 1.1E-05 3.7E-10 72.1 4.4 38 117-155 172-209 (361)
191 3cf2_A TER ATPase, transitiona 97.8 3E-05 1E-09 75.8 7.8 120 115-256 506-625 (806)
192 2vf7_A UVRA2, excinuclease ABC 97.8 5.9E-05 2E-09 74.1 9.9 26 117-142 520-546 (842)
193 2dpy_A FLII, flagellum-specifi 97.8 1.7E-05 5.7E-10 72.7 5.5 55 99-157 139-193 (438)
194 4eun_A Thermoresistant glucoki 97.8 2.6E-05 8.8E-10 63.4 6.1 51 118-173 27-79 (200)
195 2yvu_A Probable adenylyl-sulfa 97.8 2E-05 6.9E-10 63.1 5.1 48 107-157 3-50 (186)
196 3oaa_A ATP synthase subunit al 97.8 0.00013 4.5E-09 67.2 11.0 114 95-211 140-267 (513)
197 1znw_A Guanylate kinase, GMP k 97.8 1.2E-05 4.2E-10 65.7 3.7 29 116-144 16-44 (207)
198 1e69_A Chromosome segregation 97.8 0.00015 5.2E-09 63.4 10.9 25 117-142 22-46 (322)
199 2ck3_A ATP synthase subunit al 97.8 0.00014 4.8E-09 67.2 10.8 114 95-211 140-275 (510)
200 2qe7_A ATP synthase subunit al 97.8 9.8E-05 3.4E-09 68.1 9.7 114 95-211 140-267 (502)
201 3aez_A Pantothenate kinase; tr 97.8 2.8E-05 9.7E-10 68.0 5.8 43 117-159 87-131 (312)
202 1njg_A DNA polymerase III subu 97.8 3.2E-05 1.1E-09 63.3 5.9 26 121-146 46-71 (250)
203 1sxj_A Activator 1 95 kDa subu 97.8 0.0001 3.5E-09 68.7 9.9 42 118-162 75-116 (516)
204 3tr0_A Guanylate kinase, GMP k 97.7 1.7E-05 5.9E-10 64.2 3.9 27 117-143 4-30 (205)
205 2r9v_A ATP synthase subunit al 97.7 9E-05 3.1E-09 68.4 9.0 114 95-211 153-280 (515)
206 1kgd_A CASK, peripheral plasma 97.7 1.8E-05 6E-10 63.3 3.8 29 116-144 1-29 (180)
207 3end_A Light-independent proto 97.7 7.5E-05 2.6E-09 64.7 8.1 42 119-160 40-81 (307)
208 2r2a_A Uncharacterized protein 97.7 5.1E-05 1.7E-09 62.0 6.5 124 121-261 6-137 (199)
209 2ck3_D ATP synthase subunit be 97.7 0.00023 7.8E-09 65.4 11.4 64 95-161 131-195 (482)
210 1fx0_B ATP synthase beta chain 97.7 0.0003 1E-08 64.8 12.3 65 95-162 143-208 (498)
211 2dhr_A FTSH; AAA+ protein, hex 97.7 8E-05 2.7E-09 69.2 8.4 73 116-212 62-137 (499)
212 3te6_A Regulatory protein SIR3 97.7 0.00026 8.8E-09 62.0 11.1 96 108-211 36-145 (318)
213 3asz_A Uridine kinase; cytidin 97.7 3.4E-05 1.2E-09 62.9 5.2 38 118-158 4-41 (211)
214 1sxj_C Activator 1 40 kDa subu 97.7 0.00013 4.5E-09 64.1 9.2 26 123-148 49-74 (340)
215 3zq6_A Putative arsenical pump 97.7 0.00018 6.3E-09 63.0 10.0 39 121-159 15-53 (324)
216 1sxj_D Activator 1 41 kDa subu 97.7 0.00045 1.5E-08 60.4 12.5 37 106-145 47-83 (353)
217 1d2n_A N-ethylmaleimide-sensit 97.7 6.7E-05 2.3E-09 63.8 6.6 79 116-212 60-138 (272)
218 1s96_A Guanylate kinase, GMP k 97.7 2.5E-05 8.5E-10 64.8 3.8 30 116-145 12-41 (219)
219 2v9p_A Replication protein E1; 97.7 5.7E-05 2E-09 65.8 6.0 43 106-153 114-156 (305)
220 1iy2_A ATP-dependent metallopr 97.7 7.1E-05 2.4E-09 63.9 6.6 35 116-155 71-105 (278)
221 1z6g_A Guanylate kinase; struc 97.6 2.3E-05 7.8E-10 64.8 3.3 29 116-144 19-47 (218)
222 3pih_A Uvrabc system protein A 97.6 0.00069 2.4E-08 67.2 14.2 47 198-261 826-872 (916)
223 1w5s_A Origin recognition comp 97.6 0.00018 6.3E-09 64.2 9.4 89 119-211 49-151 (412)
224 3szr_A Interferon-induced GTP- 97.6 6.4E-06 2.2E-10 78.5 -0.3 127 123-258 48-197 (608)
225 1tue_A Replication protein E1; 97.6 2.8E-05 9.5E-10 63.8 3.5 60 82-144 23-82 (212)
226 2jeo_A Uridine-cytidine kinase 97.6 5.4E-05 1.9E-09 63.5 5.2 43 116-158 21-68 (245)
227 3u61_B DNA polymerase accessor 97.6 0.00056 1.9E-08 59.4 11.9 78 107-211 37-118 (324)
228 3co5_A Putative two-component 97.6 3.4E-05 1.2E-09 59.4 3.5 24 120-143 27-50 (143)
229 3cio_A ETK, tyrosine-protein k 97.6 0.00032 1.1E-08 60.8 10.1 41 119-159 103-144 (299)
230 3l0o_A Transcription terminati 97.6 0.00028 9.4E-09 63.3 9.7 57 99-158 157-215 (427)
231 3ug7_A Arsenical pump-driving 97.6 0.00059 2E-08 60.4 11.9 54 116-171 22-75 (349)
232 1ypw_A Transitional endoplasmi 97.6 5.6E-06 1.9E-10 81.4 -1.6 125 115-261 506-630 (806)
233 2j41_A Guanylate kinase; GMP, 97.6 4.2E-05 1.4E-09 61.9 3.9 28 117-144 3-30 (207)
234 1wcv_1 SOJ, segregation protei 97.6 0.00026 8.7E-09 59.7 8.9 90 119-210 5-123 (257)
235 3pvs_A Replication-associated 97.6 0.00033 1.1E-08 64.2 10.2 69 121-211 51-119 (447)
236 3iqw_A Tail-anchored protein t 97.6 0.00051 1.7E-08 60.5 11.0 48 108-158 7-54 (334)
237 1lvg_A Guanylate kinase, GMP k 97.6 3.7E-05 1.3E-09 62.5 3.3 27 118-144 2-28 (198)
238 1knq_A Gluconate kinase; ALFA/ 97.6 5.8E-05 2E-09 59.6 4.4 38 118-160 6-43 (175)
239 3kjh_A CO dehydrogenase/acetyl 97.6 9.3E-05 3.2E-09 61.5 5.8 37 123-159 3-39 (254)
240 3fkq_A NTRC-like two-domain pr 97.6 0.00054 1.8E-08 61.2 11.1 39 119-157 142-181 (373)
241 1fx0_A ATP synthase alpha chai 97.5 9.8E-05 3.4E-09 68.2 6.2 65 95-162 141-205 (507)
242 1ofh_A ATP-dependent HSL prote 97.5 0.00049 1.7E-08 59.0 10.3 35 120-157 50-84 (310)
243 1p9r_A General secretion pathw 97.5 7.9E-05 2.7E-09 67.7 5.4 40 118-157 165-204 (418)
244 1sxj_B Activator 1 37 kDa subu 97.5 0.00037 1.3E-08 60.1 9.4 81 107-211 32-120 (323)
245 2bjv_A PSP operon transcriptio 97.5 0.00019 6.4E-09 60.7 7.4 40 120-159 29-68 (265)
246 3bfv_A CAPA1, CAPB2, membrane 97.5 0.00064 2.2E-08 58.0 10.7 42 119-160 81-123 (271)
247 1sky_E F1-ATPase, F1-ATP synth 97.5 0.00012 4.3E-09 67.1 6.3 58 95-155 129-187 (473)
248 2rhm_A Putative kinase; P-loop 97.5 8.1E-05 2.8E-09 59.5 4.4 29 116-144 1-29 (193)
249 3tau_A Guanylate kinase, GMP k 97.5 6.5E-05 2.2E-09 61.5 3.9 27 118-144 6-32 (208)
250 1m7g_A Adenylylsulfate kinase; 97.5 8.9E-05 3E-09 60.7 4.7 40 117-156 22-62 (211)
251 3pxi_A Negative regulator of g 97.5 0.00029 9.8E-09 68.7 8.9 70 122-211 523-592 (758)
252 3p32_A Probable GTPase RV1496/ 97.5 0.00042 1.4E-08 61.4 9.0 41 119-159 78-118 (355)
253 3lnc_A Guanylate kinase, GMP k 97.5 3.6E-05 1.2E-09 63.9 2.0 28 117-144 24-52 (231)
254 3q9l_A Septum site-determining 97.5 0.0014 4.8E-08 54.7 11.9 39 121-159 3-42 (260)
255 3a4m_A L-seryl-tRNA(SEC) kinas 97.4 0.00012 4.1E-09 62.1 5.0 39 119-157 3-41 (260)
256 3la6_A Tyrosine-protein kinase 97.4 0.00086 2.9E-08 57.7 10.5 42 119-160 91-133 (286)
257 1qvr_A CLPB protein; coiled co 97.4 0.00049 1.7E-08 68.0 10.1 79 120-212 191-277 (854)
258 3a00_A Guanylate kinase, GMP k 97.4 6.1E-05 2.1E-09 60.4 3.0 26 120-145 1-26 (186)
259 3e1s_A Exodeoxyribonuclease V, 97.4 3.5E-05 1.2E-09 72.9 1.7 38 119-156 203-240 (574)
260 1jr3_A DNA polymerase III subu 97.4 0.00063 2.2E-08 59.9 9.8 25 121-145 39-63 (373)
261 3tqc_A Pantothenate kinase; bi 97.4 0.00038 1.3E-08 61.0 8.0 39 121-159 93-133 (321)
262 2bdt_A BH3686; alpha-beta prot 97.4 0.00012 4E-09 58.6 4.4 23 120-142 2-24 (189)
263 2qen_A Walker-type ATPase; unk 97.4 0.00019 6.5E-09 62.5 6.1 87 120-211 31-141 (350)
264 3vaa_A Shikimate kinase, SK; s 97.4 0.0001 3.5E-09 59.7 4.1 29 116-144 21-49 (199)
265 1qvr_A CLPB protein; coiled co 97.4 0.00042 1.4E-08 68.5 9.1 84 121-211 589-673 (854)
266 3pfi_A Holliday junction ATP-d 97.4 0.0013 4.5E-08 57.3 11.2 64 121-211 56-119 (338)
267 3vr4_D V-type sodium ATPase su 97.4 0.00037 1.3E-08 63.7 7.6 61 96-159 130-194 (465)
268 4eaq_A DTMP kinase, thymidylat 97.4 0.00023 7.8E-09 59.3 5.8 39 115-154 21-59 (229)
269 3mfy_A V-type ATP synthase alp 97.4 0.001 3.5E-08 62.0 10.5 62 96-162 206-267 (588)
270 1np6_A Molybdopterin-guanine d 97.4 0.00026 8.8E-09 56.5 5.8 41 117-157 3-43 (174)
271 1xjc_A MOBB protein homolog; s 97.4 0.00025 8.4E-09 56.4 5.5 85 121-209 5-107 (169)
272 1nks_A Adenylate kinase; therm 97.3 0.00023 7.9E-09 56.6 5.3 34 122-155 3-36 (194)
273 2ius_A DNA translocase FTSK; n 97.3 0.00097 3.3E-08 62.0 10.1 30 117-146 164-193 (512)
274 2c61_A A-type ATP synthase non 97.3 0.00033 1.1E-08 64.3 6.8 62 95-159 130-195 (469)
275 1ojl_A Transcriptional regulat 97.3 0.00086 2.9E-08 58.1 9.3 85 119-211 24-109 (304)
276 1kht_A Adenylate kinase; phosp 97.3 0.0002 6.9E-09 56.9 4.9 37 120-156 3-39 (192)
277 1hqc_A RUVB; extended AAA-ATPa 97.3 0.00094 3.2E-08 57.7 9.5 66 120-211 38-103 (324)
278 1kag_A SKI, shikimate kinase I 97.3 0.00014 4.7E-09 57.2 3.5 26 119-144 3-28 (173)
279 1r6b_X CLPA protein; AAA+, N-t 97.3 0.0008 2.7E-08 65.5 9.6 81 121-211 489-570 (758)
280 2p67_A LAO/AO transport system 97.3 0.00031 1.1E-08 62.0 6.0 43 117-159 53-95 (341)
281 1hyq_A MIND, cell division inh 97.3 0.0015 5.2E-08 54.8 10.0 38 122-159 5-42 (263)
282 2qor_A Guanylate kinase; phosp 97.3 0.00016 5.4E-09 58.8 3.7 29 116-144 8-36 (204)
283 2a5y_B CED-4; apoptosis; HET: 97.3 0.002 6.7E-08 60.4 11.6 91 119-209 151-254 (549)
284 2woo_A ATPase GET3; tail-ancho 97.3 0.0012 4.2E-08 57.9 9.6 40 120-159 19-58 (329)
285 3gqb_B V-type ATP synthase bet 97.3 0.0004 1.4E-08 63.4 6.6 48 95-145 125-172 (464)
286 2vp4_A Deoxynucleoside kinase; 97.3 0.00013 4.4E-09 60.6 3.0 36 116-155 16-51 (230)
287 2plr_A DTMP kinase, probable t 97.3 0.00032 1.1E-08 56.7 5.3 35 119-154 3-37 (213)
288 1iqp_A RFCS; clamp loader, ext 97.3 0.00054 1.8E-08 59.1 7.1 24 122-145 48-71 (327)
289 3vr4_A V-type sodium ATPase ca 97.2 0.0017 5.7E-08 60.8 10.4 59 96-159 211-269 (600)
290 1a5t_A Delta prime, HOLB; zinc 97.2 0.003 1E-07 55.3 11.7 86 121-211 25-121 (334)
291 3fwy_A Light-independent proto 97.2 0.00038 1.3E-08 60.8 5.6 43 117-159 45-87 (314)
292 2axn_A 6-phosphofructo-2-kinas 97.2 0.0024 8.2E-08 59.6 11.3 40 119-158 34-73 (520)
293 1yrb_A ATP(GTP)binding protein 97.2 0.00043 1.5E-08 58.1 5.7 41 118-159 12-52 (262)
294 2www_A Methylmalonic aciduria 97.2 0.0004 1.4E-08 61.5 5.8 42 118-159 72-113 (349)
295 2qt1_A Nicotinamide riboside k 97.2 0.00022 7.5E-09 57.9 3.7 40 116-159 17-56 (207)
296 2c9o_A RUVB-like 1; hexameric 97.2 0.00057 2E-08 62.6 6.9 81 115-212 58-140 (456)
297 2gno_A DNA polymerase III, gam 97.2 0.0009 3.1E-08 58.2 7.8 81 108-211 9-95 (305)
298 3ney_A 55 kDa erythrocyte memb 97.2 0.00025 8.6E-09 57.8 3.8 27 118-144 17-43 (197)
299 3cr8_A Sulfate adenylyltranfer 97.2 0.00019 6.6E-09 67.4 3.5 41 117-157 366-407 (552)
300 1nn5_A Similar to deoxythymidy 97.2 0.00051 1.8E-08 55.7 5.7 38 118-155 7-44 (215)
301 2bbw_A Adenylate kinase 4, AK4 97.2 0.00028 9.6E-09 59.0 4.0 26 119-144 26-51 (246)
302 1qhx_A CPT, protein (chloramph 97.1 0.00029 9.7E-09 55.6 3.9 25 120-144 3-27 (178)
303 3cm0_A Adenylate kinase; ATP-b 97.1 0.00025 8.7E-09 56.3 3.6 27 118-144 2-28 (186)
304 3igf_A ALL4481 protein; two-do 97.1 0.0011 3.9E-08 59.2 8.2 36 121-156 3-38 (374)
305 1um8_A ATP-dependent CLP prote 97.1 0.00084 2.9E-08 59.7 7.2 36 118-156 70-105 (376)
306 1svm_A Large T antigen; AAA+ f 97.1 0.00037 1.3E-08 62.4 4.8 35 116-153 165-199 (377)
307 1gvn_B Zeta; postsegregational 97.1 0.00046 1.6E-08 59.4 5.3 37 118-157 31-67 (287)
308 4a8j_A Elongator complex prote 97.1 0.00017 5.9E-09 63.8 2.5 39 97-138 17-55 (361)
309 3kta_A Chromosome segregation 97.1 0.0003 1E-08 55.8 3.7 27 117-144 24-50 (182)
310 2wwf_A Thymidilate kinase, put 97.1 0.00082 2.8E-08 54.4 6.2 40 116-155 6-45 (212)
311 1z6t_A APAF-1, apoptotic prote 97.1 0.00067 2.3E-08 63.8 6.4 101 106-208 134-246 (591)
312 1cp2_A CP2, nitrogenase iron p 97.0 0.00076 2.6E-08 56.9 5.8 39 122-160 3-41 (269)
313 1odf_A YGR205W, hypothetical 3 97.0 0.00035 1.2E-08 60.3 3.7 44 116-159 27-73 (290)
314 3kb2_A SPBC2 prophage-derived 97.0 0.0004 1.4E-08 54.2 3.7 23 122-144 3-25 (173)
315 3uk6_A RUVB-like 2; hexameric 97.0 0.00058 2E-08 60.2 5.1 35 110-145 61-95 (368)
316 1a7j_A Phosphoribulokinase; tr 97.0 0.00042 1.4E-08 59.8 4.0 42 119-160 4-45 (290)
317 4e22_A Cytidylate kinase; P-lo 97.0 0.00038 1.3E-08 58.7 3.6 26 118-143 25-50 (252)
318 2z0h_A DTMP kinase, thymidylat 97.0 0.00081 2.8E-08 53.7 5.4 34 122-155 2-35 (197)
319 2p5t_B PEZT; postsegregational 97.0 0.00039 1.3E-08 58.6 3.6 38 118-158 30-67 (253)
320 2pbr_A DTMP kinase, thymidylat 97.0 0.00085 2.9E-08 53.3 5.4 34 122-155 2-35 (195)
321 3llm_A ATP-dependent RNA helic 97.0 0.0038 1.3E-07 51.6 9.5 92 117-210 73-188 (235)
322 1y63_A LMAJ004144AAA protein; 97.0 0.00056 1.9E-08 54.6 4.1 37 117-157 7-43 (184)
323 3sop_A Neuronal-specific septi 97.0 0.00043 1.5E-08 59.1 3.6 32 122-153 4-35 (270)
324 3euj_A Chromosome partition pr 97.0 0.00031 1E-08 64.9 2.8 36 117-153 27-62 (483)
325 3io3_A DEHA2D07832P; chaperone 97.0 0.0013 4.6E-08 58.2 6.8 58 108-170 9-68 (348)
326 2oap_1 GSPE-2, type II secreti 97.0 0.00028 9.7E-09 65.7 2.5 38 117-155 257-294 (511)
327 3t61_A Gluconokinase; PSI-biol 97.0 0.00052 1.8E-08 55.4 3.8 36 120-160 18-53 (202)
328 3qxc_A Dethiobiotin synthetase 97.0 0.008 2.7E-07 50.4 11.2 90 120-211 21-144 (242)
329 2fna_A Conserved hypothetical 97.0 0.003 1E-07 54.8 9.0 35 121-158 31-65 (357)
330 2afh_E Nitrogenase iron protei 96.9 0.001 3.6E-08 56.8 5.8 39 122-160 4-42 (289)
331 2c95_A Adenylate kinase 1; tra 96.9 0.00056 1.9E-08 54.6 3.9 26 119-144 8-33 (196)
332 4ag6_A VIRB4 ATPase, type IV s 96.9 0.001 3.6E-08 59.5 6.0 42 118-159 33-74 (392)
333 3trf_A Shikimate kinase, SK; a 96.9 0.00059 2E-08 54.1 3.9 25 120-144 5-29 (185)
334 3iij_A Coilin-interacting nucl 96.9 0.00058 2E-08 54.0 3.8 28 117-144 8-35 (180)
335 1ly1_A Polynucleotide kinase; 96.9 0.00049 1.7E-08 54.1 3.3 32 121-156 3-34 (181)
336 3lw7_A Adenylate kinase relate 96.9 0.00073 2.5E-08 52.5 4.3 19 122-140 3-21 (179)
337 2f1r_A Molybdopterin-guanine d 96.9 0.00056 1.9E-08 54.4 3.5 28 121-148 3-30 (171)
338 1cke_A CK, MSSA, protein (cyti 96.9 0.00068 2.3E-08 55.5 4.2 25 120-144 5-29 (227)
339 1gtv_A TMK, thymidylate kinase 96.9 0.00034 1.2E-08 56.8 2.2 33 122-154 2-34 (214)
340 1in4_A RUVB, holliday junction 96.9 0.00056 1.9E-08 60.0 3.7 24 121-144 52-75 (334)
341 1tev_A UMP-CMP kinase; ploop, 96.9 0.00064 2.2E-08 54.1 3.8 26 119-144 2-27 (196)
342 3ea0_A ATPase, para family; al 96.9 0.0012 4.2E-08 54.6 5.6 41 119-159 3-45 (245)
343 4b3f_X DNA-binding protein smu 96.9 0.00066 2.3E-08 65.0 4.4 42 118-159 203-244 (646)
344 3zvl_A Bifunctional polynucleo 96.9 0.0023 8E-08 57.9 7.9 25 118-142 256-280 (416)
345 2yv5_A YJEQ protein; hydrolase 96.9 0.00034 1.2E-08 60.7 2.2 36 117-153 162-197 (302)
346 3umf_A Adenylate kinase; rossm 96.9 0.00076 2.6E-08 55.7 4.2 30 115-144 24-53 (217)
347 1r6b_X CLPA protein; AAA+, N-t 96.9 0.0013 4.3E-08 64.1 6.4 81 118-212 205-292 (758)
348 2ze6_A Isopentenyl transferase 96.8 0.00067 2.3E-08 57.2 3.7 23 122-144 3-25 (253)
349 2v54_A DTMP kinase, thymidylat 96.8 0.00083 2.8E-08 54.0 3.9 36 118-155 2-37 (204)
350 2qag_B Septin-6, protein NEDD5 96.8 0.00062 2.1E-08 61.9 3.4 28 116-143 36-65 (427)
351 3fgn_A Dethiobiotin synthetase 96.8 0.018 6.3E-07 48.4 12.3 89 121-211 27-139 (251)
352 2iut_A DNA translocase FTSK; n 96.8 0.003 1E-07 59.4 8.0 39 120-158 214-256 (574)
353 4edh_A DTMP kinase, thymidylat 96.8 0.0015 5E-08 53.8 5.2 38 118-155 4-41 (213)
354 1ihu_A Arsenical pump-driving 96.8 0.001 3.5E-08 62.9 4.8 53 106-159 313-366 (589)
355 1ihu_A Arsenical pump-driving 96.8 0.0015 5.2E-08 61.7 6.0 41 119-159 7-47 (589)
356 1zd8_A GTP:AMP phosphotransfer 96.8 0.00088 3E-08 55.2 3.8 28 116-143 3-30 (227)
357 2woj_A ATPase GET3; tail-ancho 96.8 0.0016 5.5E-08 57.7 5.6 49 108-159 9-59 (354)
358 1aky_A Adenylate kinase; ATP:A 96.8 0.001 3.5E-08 54.5 4.0 26 119-144 3-28 (220)
359 2dy1_A Elongation factor G; tr 96.7 0.0035 1.2E-07 60.2 8.3 91 117-209 6-110 (665)
360 1uj2_A Uridine-cytidine kinase 96.7 0.0011 3.9E-08 55.5 4.3 41 120-160 22-67 (252)
361 2cdn_A Adenylate kinase; phosp 96.7 0.0011 3.8E-08 53.4 4.1 27 118-144 18-44 (201)
362 2bwj_A Adenylate kinase 5; pho 96.7 0.0011 3.8E-08 53.0 4.0 27 118-144 10-36 (199)
363 3v9p_A DTMP kinase, thymidylat 96.7 0.0014 4.9E-08 54.4 4.8 41 115-155 20-64 (227)
364 3k9g_A PF-32 protein; ssgcid, 96.7 0.0015 5.3E-08 55.0 5.0 41 119-160 26-67 (267)
365 1via_A Shikimate kinase; struc 96.7 0.0009 3.1E-08 52.7 3.3 31 122-157 6-36 (175)
366 2vli_A Antibiotic resistance p 96.7 0.00078 2.7E-08 53.2 2.9 25 119-143 4-28 (183)
367 1nij_A Hypothetical protein YJ 96.7 0.00099 3.4E-08 58.1 3.7 35 120-156 4-38 (318)
368 2oze_A ORF delta'; para, walke 96.7 0.0017 5.9E-08 55.6 5.2 42 120-161 34-78 (298)
369 1jjv_A Dephospho-COA kinase; P 96.7 0.00091 3.1E-08 54.1 3.2 21 122-142 4-24 (206)
370 2xau_A PRE-mRNA-splicing facto 96.7 0.01 3.4E-07 58.0 11.1 93 117-209 106-219 (773)
371 2if2_A Dephospho-COA kinase; a 96.7 0.001 3.5E-08 53.6 3.4 21 122-142 3-23 (204)
372 1u0l_A Probable GTPase ENGC; p 96.7 0.00038 1.3E-08 60.3 0.9 37 117-153 166-202 (301)
373 1bif_A 6-phosphofructo-2-kinas 96.7 0.015 5E-07 53.4 11.5 38 119-156 38-75 (469)
374 1lw7_A Transcriptional regulat 96.6 0.00073 2.5E-08 60.1 2.6 34 115-148 163-198 (365)
375 2rcn_A Probable GTPase ENGC; Y 96.6 0.0013 4.6E-08 58.3 4.3 44 103-152 204-248 (358)
376 2ph1_A Nucleotide-binding prot 96.6 0.002 6.8E-08 54.3 5.2 42 120-161 18-60 (262)
377 1zak_A Adenylate kinase; ATP:A 96.6 0.0013 4.4E-08 53.9 3.9 26 119-144 4-29 (222)
378 3nwj_A ATSK2; P loop, shikimat 96.6 0.0012 4.1E-08 55.7 3.6 29 116-144 41-72 (250)
379 1g3q_A MIND ATPase, cell divis 96.6 0.0021 7.2E-08 52.9 5.1 39 121-159 3-42 (237)
380 2jaq_A Deoxyguanosine kinase; 96.6 0.0013 4.6E-08 52.6 3.7 23 122-144 2-24 (205)
381 2iyv_A Shikimate kinase, SK; t 96.6 0.0012 4E-08 52.4 3.3 24 121-144 3-26 (184)
382 2r62_A Cell division protease 96.6 0.00068 2.3E-08 57.2 2.0 23 122-144 46-68 (268)
383 3cwq_A Para family chromosome 96.6 0.0022 7.7E-08 52.2 5.1 38 123-161 4-41 (209)
384 3upu_A ATP-dependent DNA helic 96.6 0.0014 4.7E-08 60.1 4.1 36 122-157 47-83 (459)
385 3lv8_A DTMP kinase, thymidylat 96.6 0.0028 9.5E-08 53.0 5.6 41 115-155 22-63 (236)
386 3gqb_A V-type ATP synthase alp 96.6 0.0023 7.9E-08 59.6 5.4 59 96-159 200-258 (578)
387 1qf9_A UMP/CMP kinase, protein 96.5 0.0017 5.7E-08 51.5 3.9 25 120-144 6-30 (194)
388 3be4_A Adenylate kinase; malar 96.5 0.0016 5.5E-08 53.3 3.9 27 118-144 3-29 (217)
389 3qf7_A RAD50; ABC-ATPase, ATPa 96.5 0.0015 5.2E-08 58.1 4.0 28 117-145 21-48 (365)
390 3sr0_A Adenylate kinase; phosp 96.5 0.0016 5.4E-08 53.3 3.7 30 122-156 2-31 (206)
391 1f2t_A RAD50 ABC-ATPase; DNA d 96.5 0.0019 6.4E-08 50.0 3.9 24 121-144 24-47 (149)
392 1u0j_A DNA replication protein 96.5 0.0025 8.4E-08 54.3 5.0 36 108-144 93-128 (267)
393 1ex7_A Guanylate kinase; subst 96.5 0.0014 4.6E-08 52.9 3.2 22 122-143 3-24 (186)
394 3tlx_A Adenylate kinase 2; str 96.5 0.0018 6.1E-08 54.2 4.1 27 118-144 27-53 (243)
395 3fb4_A Adenylate kinase; psych 96.5 0.0016 5.5E-08 52.9 3.7 23 122-144 2-24 (216)
396 1tq4_A IIGP1, interferon-induc 96.5 0.00045 1.6E-08 62.6 0.3 25 120-144 69-93 (413)
397 4tmk_A Protein (thymidylate ki 96.5 0.0035 1.2E-07 51.5 5.6 36 119-154 2-38 (213)
398 1zuh_A Shikimate kinase; alpha 96.5 0.0018 6.2E-08 50.5 3.7 24 121-144 8-31 (168)
399 1ukz_A Uridylate kinase; trans 96.5 0.002 6.7E-08 51.9 3.8 25 119-143 14-38 (203)
400 1t9h_A YLOQ, probable GTPase E 96.5 0.00037 1.3E-08 60.7 -0.6 36 117-152 170-205 (307)
401 1e6c_A Shikimate kinase; phosp 96.5 0.0016 5.6E-08 50.8 3.2 24 121-144 3-26 (173)
402 3m6a_A ATP-dependent protease 96.4 0.0016 5.3E-08 61.2 3.5 26 119-144 107-132 (543)
403 3pxg_A Negative regulator of g 96.4 0.0034 1.2E-07 57.7 5.8 29 118-146 199-227 (468)
404 1pui_A ENGB, probable GTP-bind 96.4 0.001 3.5E-08 53.6 2.0 27 117-143 23-49 (210)
405 1ofu_X SULA, hypothetical prot 96.4 0.098 3.4E-06 38.7 12.7 86 120-205 2-90 (119)
406 1q3t_A Cytidylate kinase; nucl 96.4 0.0023 7.9E-08 53.0 4.2 28 117-144 13-40 (236)
407 2qmh_A HPR kinase/phosphorylas 96.4 0.0018 6.2E-08 52.7 3.4 25 119-143 33-57 (205)
408 2wsm_A Hydrogenase expression/ 96.4 0.0038 1.3E-07 50.7 5.3 38 121-159 31-68 (221)
409 3d3q_A TRNA delta(2)-isopenten 96.4 0.0026 9E-08 56.0 4.6 33 121-158 8-40 (340)
410 3ld9_A DTMP kinase, thymidylat 96.4 0.0031 1.1E-07 52.3 4.7 40 118-157 19-59 (223)
411 3dl0_A Adenylate kinase; phosp 96.4 0.0021 7.1E-08 52.3 3.5 22 122-143 2-23 (216)
412 3r20_A Cytidylate kinase; stru 96.4 0.0022 7.5E-08 53.6 3.7 25 120-144 9-33 (233)
413 1vht_A Dephospho-COA kinase; s 96.4 0.0022 7.6E-08 52.3 3.7 24 119-142 3-26 (218)
414 1uf9_A TT1252 protein; P-loop, 96.4 0.0024 8.1E-08 51.2 3.8 32 120-157 8-39 (203)
415 2pt5_A Shikimate kinase, SK; a 96.3 0.0026 8.7E-08 49.5 3.7 23 122-144 2-24 (168)
416 3k1j_A LON protease, ATP-depen 96.3 0.0017 5.7E-08 61.7 3.1 39 117-155 57-95 (604)
417 1ak2_A Adenylate kinase isoenz 96.3 0.0029 9.9E-08 52.3 4.2 26 119-144 15-40 (233)
418 3hws_A ATP-dependent CLP prote 96.3 0.0032 1.1E-07 55.6 4.5 34 119-155 50-83 (363)
419 2o5v_A DNA replication and rep 96.3 0.0027 9.1E-08 56.5 3.8 25 117-142 24-48 (359)
420 1w1w_A Structural maintenance 96.2 0.0028 9.6E-08 57.5 3.9 28 117-144 23-50 (430)
421 2xb4_A Adenylate kinase; ATP-b 96.2 0.003 1E-07 51.9 3.7 23 122-144 2-24 (223)
422 2v6i_A RNA helicase; membrane, 96.2 0.016 5.6E-07 52.5 8.9 37 119-155 1-38 (431)
423 2xj4_A MIPZ; replication, cell 96.2 0.0041 1.4E-07 53.2 4.6 37 122-158 6-43 (286)
424 2va8_A SSO2462, SKI2-type heli 96.2 0.029 9.9E-07 54.0 11.0 96 116-211 42-158 (715)
425 1e4v_A Adenylate kinase; trans 96.2 0.0036 1.2E-07 50.9 3.8 23 122-144 2-24 (214)
426 1qhl_A Protein (cell division 96.1 0.00029 1E-08 58.7 -2.9 33 121-153 28-60 (227)
427 3a8t_A Adenylate isopentenyltr 96.1 0.0032 1.1E-07 55.4 3.5 37 118-159 38-74 (339)
428 3ake_A Cytidylate kinase; CMP 96.1 0.0037 1.3E-07 50.2 3.7 23 122-144 4-26 (208)
429 1x6v_B Bifunctional 3'-phospho 96.1 0.0046 1.6E-07 58.9 4.7 39 118-156 50-88 (630)
430 1e9r_A Conjugal transfer prote 96.1 0.0063 2.1E-07 55.1 5.5 38 121-158 54-91 (437)
431 1oix_A RAS-related protein RAB 96.1 0.0038 1.3E-07 49.8 3.4 23 122-144 31-53 (191)
432 1byi_A Dethiobiotin synthase; 96.1 0.0069 2.4E-07 49.3 5.1 34 122-155 3-37 (224)
433 3qks_A DNA double-strand break 96.1 0.0046 1.6E-07 50.2 3.9 25 121-145 24-48 (203)
434 2hf9_A Probable hydrogenase ni 96.0 0.0068 2.3E-07 49.3 4.8 37 121-158 39-75 (226)
435 1m8p_A Sulfate adenylyltransfe 96.0 0.0056 1.9E-07 57.8 4.8 39 119-157 395-434 (573)
436 2f9l_A RAB11B, member RAS onco 96.0 0.0038 1.3E-07 50.0 3.1 22 122-143 7-28 (199)
437 3tqf_A HPR(Ser) kinase; transf 96.0 0.0047 1.6E-07 49.2 3.5 24 119-142 15-38 (181)
438 3pg5_A Uncharacterized protein 96.0 0.0037 1.3E-07 55.4 3.3 39 123-161 5-43 (361)
439 4dcu_A GTP-binding protein ENG 96.0 0.011 3.6E-07 54.2 6.4 21 122-142 25-45 (456)
440 2ga8_A Hypothetical 39.9 kDa p 96.0 0.0047 1.6E-07 54.7 3.8 29 117-145 19-49 (359)
441 2jlq_A Serine protease subunit 95.9 0.022 7.4E-07 52.0 8.4 92 119-210 18-122 (451)
442 2gks_A Bifunctional SAT/APS ki 95.9 0.006 2.1E-07 57.2 4.7 38 120-157 372-409 (546)
443 1ltq_A Polynucleotide kinase; 95.9 0.0043 1.5E-07 53.1 3.3 22 121-142 3-24 (301)
444 3exa_A TRNA delta(2)-isopenten 95.9 0.0048 1.7E-07 53.7 3.6 25 120-144 3-27 (322)
445 2gj8_A MNME, tRNA modification 95.9 0.0051 1.7E-07 48.1 3.3 24 119-142 3-26 (172)
446 2grj_A Dephospho-COA kinase; T 95.9 0.0054 1.8E-07 49.5 3.5 35 119-158 11-45 (192)
447 3crm_A TRNA delta(2)-isopenten 95.9 0.0052 1.8E-07 53.8 3.6 32 121-157 6-37 (323)
448 3foz_A TRNA delta(2)-isopenten 95.8 0.006 2E-07 53.0 3.9 25 119-143 9-33 (316)
449 2f6r_A COA synthase, bifunctio 95.8 0.0055 1.9E-07 52.4 3.6 22 120-141 75-96 (281)
450 2gk6_A Regulator of nonsense t 95.8 0.0092 3.1E-07 56.8 5.5 39 120-158 195-234 (624)
451 2chq_A Replication factor C sm 95.8 0.0071 2.4E-07 51.7 4.3 23 123-145 41-63 (319)
452 3qkt_A DNA double-strand break 95.8 0.0066 2.3E-07 53.3 3.9 25 121-145 24-48 (339)
453 3tmk_A Thymidylate kinase; pho 95.8 0.0084 2.9E-07 49.3 4.3 29 118-146 3-31 (216)
454 4hlc_A DTMP kinase, thymidylat 95.7 0.011 3.8E-07 48.1 5.0 35 120-155 2-36 (205)
455 1ni3_A YCHF GTPase, YCHF GTP-b 95.7 0.0077 2.6E-07 54.1 4.3 28 115-142 15-42 (392)
456 3sfz_A APAF-1, apoptotic pepti 95.7 0.037 1.3E-06 56.0 9.6 101 106-208 134-246 (1249)
457 3hjn_A DTMP kinase, thymidylat 95.7 0.015 5E-07 47.0 5.4 35 122-156 2-36 (197)
458 2ocp_A DGK, deoxyguanosine kin 95.6 0.008 2.7E-07 49.8 3.8 26 119-144 1-26 (241)
459 2r44_A Uncharacterized protein 95.6 0.0036 1.2E-07 54.4 1.6 25 120-144 46-70 (331)
460 2wji_A Ferrous iron transport 95.6 0.0067 2.3E-07 46.9 3.0 21 122-142 5-25 (165)
461 1vt4_I APAF-1 related killer D 95.6 0.029 1E-06 56.4 8.1 44 119-162 149-195 (1221)
462 3eph_A TRNA isopentenyltransfe 95.5 0.0091 3.1E-07 53.8 4.0 25 120-144 2-26 (409)
463 3ez2_A Plasmid partition prote 95.5 0.011 3.6E-07 53.0 4.3 41 119-159 107-154 (398)
464 2zej_A Dardarin, leucine-rich 95.4 0.0069 2.3E-07 47.7 2.4 21 122-142 4-24 (184)
465 3t1o_A Gliding protein MGLA; G 95.4 0.067 2.3E-06 41.8 8.3 20 122-141 16-35 (198)
466 1g8p_A Magnesium-chelatase 38 95.4 0.006 2E-07 53.1 2.1 22 123-144 48-69 (350)
467 2xzl_A ATP-dependent helicase 95.2 0.011 3.8E-07 57.9 3.9 40 120-159 375-415 (802)
468 3ch4_B Pmkase, phosphomevalona 95.2 0.046 1.6E-06 44.4 6.9 56 118-175 9-64 (202)
469 1g8f_A Sulfate adenylyltransfe 95.2 0.014 4.8E-07 54.2 4.3 40 119-158 394-435 (511)
470 2wjy_A Regulator of nonsense t 95.2 0.02 6.7E-07 56.2 5.5 39 120-158 371-410 (800)
471 2wjg_A FEOB, ferrous iron tran 95.2 0.011 3.6E-07 46.4 3.0 22 121-142 8-29 (188)
472 1g41_A Heat shock protein HSLU 95.2 0.01 3.5E-07 54.2 3.1 23 122-144 52-74 (444)
473 2zj8_A DNA helicase, putative 95.1 0.045 1.5E-06 52.8 7.8 96 116-211 35-151 (720)
474 3ez9_A Para; DNA binding, wing 95.1 0.0093 3.2E-07 53.5 2.8 41 119-159 110-157 (403)
475 1w36_D RECD, exodeoxyribonucle 95.1 0.021 7.2E-07 54.2 5.3 37 119-155 163-203 (608)
476 2h92_A Cytidylate kinase; ross 95.1 0.013 4.4E-07 47.6 3.3 24 120-143 3-26 (219)
477 2qnr_A Septin-2, protein NEDD5 95.0 0.011 3.8E-07 51.0 2.9 21 123-143 21-41 (301)
478 2ce2_X GTPase HRAS; signaling 95.0 0.014 4.9E-07 44.2 3.2 22 122-143 5-26 (166)
479 3nbx_X ATPase RAVA; AAA+ ATPas 95.0 0.0055 1.9E-07 56.9 0.9 27 118-144 39-65 (500)
480 1kao_A RAP2A; GTP-binding prot 95.0 0.014 4.7E-07 44.4 3.1 22 122-143 5-26 (167)
481 1z2a_A RAS-related protein RAB 95.0 0.014 4.7E-07 44.6 3.1 22 122-143 7-28 (168)
482 2dyk_A GTP-binding protein; GT 95.0 0.014 4.9E-07 44.2 3.1 21 122-142 3-23 (161)
483 1p5z_B DCK, deoxycytidine kina 95.0 0.0072 2.5E-07 50.8 1.4 27 118-144 22-48 (263)
484 2ged_A SR-beta, signal recogni 94.8 0.016 5.5E-07 45.6 3.1 24 120-143 48-71 (193)
485 1u8z_A RAS-related protein RAL 94.8 0.017 5.7E-07 44.0 3.1 22 122-143 6-27 (168)
486 1g16_A RAS-related protein SEC 94.8 0.017 5.9E-07 44.1 3.2 20 123-142 6-25 (170)
487 2nzj_A GTP-binding protein REM 94.8 0.015 5.3E-07 44.7 2.9 22 122-143 6-27 (175)
488 3auy_A DNA double-strand break 94.8 0.021 7.3E-07 50.6 4.1 24 121-144 26-49 (371)
489 1ek0_A Protein (GTP-binding pr 94.8 0.017 5.9E-07 44.0 3.1 22 122-143 5-26 (170)
490 2hjg_A GTP-binding protein ENG 94.8 0.041 1.4E-06 49.9 6.0 21 122-142 5-25 (436)
491 2c78_A Elongation factor TU-A; 94.8 0.059 2E-06 48.3 7.0 28 121-148 12-39 (405)
492 1z08_A RAS-related protein RAB 94.8 0.018 6.2E-07 44.1 3.2 22 122-143 8-29 (170)
493 1wms_A RAB-9, RAB9, RAS-relate 94.7 0.018 6.1E-07 44.5 3.1 22 122-143 9-30 (177)
494 1z0j_A RAB-22, RAS-related pro 94.7 0.018 6.3E-07 44.0 3.1 23 122-144 8-30 (170)
495 3q85_A GTP-binding protein REM 94.7 0.017 5.9E-07 44.2 3.0 19 123-141 5-23 (169)
496 1r8s_A ADP-ribosylation factor 94.7 0.02 6.8E-07 43.6 3.3 21 123-143 3-23 (164)
497 2erx_A GTP-binding protein DI- 94.7 0.017 5.9E-07 44.1 2.9 21 122-142 5-25 (172)
498 1ega_A Protein (GTP-binding pr 94.7 0.013 4.5E-07 50.5 2.5 24 120-143 8-31 (301)
499 1ky3_A GTP-binding protein YPT 94.7 0.019 6.4E-07 44.5 3.1 22 122-143 10-31 (182)
500 3q72_A GTP-binding protein RAD 94.7 0.017 6E-07 44.0 2.9 19 123-141 5-23 (166)
No 1
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=100.00 E-value=5.3e-32 Score=242.30 Aligned_cols=200 Identities=49% Similarity=0.755 Sum_probs=179.6
Q ss_pred chHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHH
Q 024705 63 IMQKDNALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIK 142 (264)
Q Consensus 63 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~ 142 (264)
..++.++|..++.|++++||++..+++.......+.++++||+++||.+||+||+++|++++|+||||+|||||+++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~ 83 (356)
T 3hr8_A 4 EKQKKSVLEKALKRIEENFGKGSIMILGDETQVQPVEVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIA 83 (356)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSSCCTTCCSCCCCCCEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHhCCCCceechhccccCCCceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35688899999999999999998888776543333789999999999999889999999999999999999999999999
Q ss_pred HHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCC
Q 024705 143 EAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPING 222 (264)
Q Consensus 143 ~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~ 222 (264)
.+...+++|+|++.|+...+.+++++|++++++.+..+.+.++++..++.++...++++++|||++.+++..++++.+++
T Consensus 84 ~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~~l~~~~el~g~~G~ 163 (356)
T 3hr8_A 84 EAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVDLIVVDSVAALVPRAEIEGAMGD 163 (356)
T ss_dssp HHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCSEEEEECTTTCCCHHHHTTCCCS
T ss_pred HHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCCeEEehHhhhhcChhhhcccchh
Confidence 99999999999999999999999999999999999999999999999988888789999999999999976788887777
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhh
Q 024705 223 MYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLK 262 (264)
Q Consensus 223 ~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~ 262 (264)
...+.+++.+++.++.|...+++.|++||++||+++++..
T Consensus 164 ~q~~~qar~la~~L~~L~~lak~~~~tVI~inqv~~k~g~ 203 (356)
T 3hr8_A 164 MQVGLQARLMSQALRKIAGSVNKSKAVVIFTNQIRMKIGV 203 (356)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEEESSSCSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeecccc
Confidence 6667888999999999998889999999999999766543
No 2
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.97 E-value=6.4e-31 Score=235.57 Aligned_cols=198 Identities=46% Similarity=0.761 Sum_probs=168.6
Q ss_pred hHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHH
Q 024705 64 MQKDNALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 64 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~ 143 (264)
.++.+.|+.+++++++.||++..+.+.+.. ......++||++.||.++++||+++|++++|+||||+|||||+++++.+
T Consensus 6 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 6 PDREKALELAMAQIDKNFGKGSVMRLGEEV-RQPISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTSSCCTTCCC-CCCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCceeccccc-cccCCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 357789999999999999999887776643 3567899999999999998789999999999999999999999999999
Q ss_pred HhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCC
Q 024705 144 AQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGM 223 (264)
Q Consensus 144 ~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~ 223 (264)
++..|++|+|++.|+...+.+++++|++.+++.+.++.+.+++++.++.++...++++|||||++.+.+..++++.+++.
T Consensus 85 ~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~ 164 (349)
T 2zr9_A 85 AQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDS 164 (349)
T ss_dssp HHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----
T ss_pred HHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccc
Confidence 99999999999999999888899999999999999999999999988888877889999999999998655665554443
Q ss_pred CcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhh
Q 024705 224 YSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLK 262 (264)
Q Consensus 224 ~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~ 262 (264)
..+.|++.+.+.+++|...+++.|++||++||++++++.
T Consensus 165 ~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~ 203 (349)
T 2zr9_A 165 HVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGV 203 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCc
Confidence 333567778899999998889999999999999987653
No 3
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=99.97 E-value=1.7e-30 Score=233.17 Aligned_cols=198 Identities=52% Similarity=0.751 Sum_probs=163.9
Q ss_pred HHHHHHHHHHHHHHHhcCCccccccccccCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 65 QKDNALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 65 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
++.+.|+.+++++++.||++..+.+.+.. ......++||++.||.++++||+++|++++|+|+||+|||||+++++.++
T Consensus 9 ~~~~~l~~~~~~i~~~~~~~~~~~l~~~~-~~~~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 9 NKQKALAAALGQIEKQFGKGSIMRLGEDR-SMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp -CHHHHHHHHHHHHHHHCTTSSCCTTCCC-BCCCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCceEccccc-cccCCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999887776643 35688999999999999976899999999999999999999999999999
Q ss_pred hhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCC
Q 024705 145 QKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMY 224 (264)
Q Consensus 145 ~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~ 224 (264)
+..|++|+|++.|+...+.+++++|++.+++.+.++.+.+++.+.++.+++..++++||||+++.+.+..++++..++..
T Consensus 88 ~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~ 167 (356)
T 1u94_A 88 QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 167 (356)
T ss_dssp HHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC-----
T ss_pred HHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccch
Confidence 99999999999999999888899999999999999989999988888887778999999999999986555554433322
Q ss_pred cHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 225 SDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 225 ~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
.+.|.+.+.+.+++|...+++.|++||++||++++++.+
T Consensus 168 ~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~ 206 (356)
T 1u94_A 168 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVM 206 (356)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC--------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcc
Confidence 235667788999999999999999999999999887653
No 4
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=99.97 E-value=4.7e-30 Score=230.96 Aligned_cols=200 Identities=47% Similarity=0.748 Sum_probs=165.4
Q ss_pred chHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHH
Q 024705 63 IMQKDNALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIK 142 (264)
Q Consensus 63 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~ 142 (264)
.+++.+.|+.+++++++.|+++..+++.+.. ......++||++.||.+|++||+++|++++|+||||+|||||+++++.
T Consensus 18 ~~~~~~~l~~~~~~i~~~~~~~~~~~l~~~~-~~~~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 18 AKERSKAIETAMSQIEKAFGKGSIMKLGAES-KLDVQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTSSCCTTSCC-CCCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcceeccccc-cccCceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 3468899999999999999998877666543 356789999999999999778999999999999999999999999999
Q ss_pred HHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCC
Q 024705 143 EAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPING 222 (264)
Q Consensus 143 ~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~ 222 (264)
+++..|++|+||+.|+...+.+++++|++.+++.+.++.+.+++.+.++.+++..++++|||||++.+.++.+++++.++
T Consensus 97 ~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd 176 (366)
T 1xp8_A 97 QAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGD 176 (366)
T ss_dssp HHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC------
T ss_pred HHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCCEEEEeChHHhcccccccccccc
Confidence 99988999999999999999888999999999999999999999999998888789999999999999864555443322
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 223 MYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 223 ~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
...+.+.+.+.+.+++|...+++.|++||++||++++++.+
T Consensus 177 ~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~~~~~~~ 217 (366)
T 1xp8_A 177 SLPGLQARLMSQALRKLTAILSKTGTAAIFINQVREKIGVM 217 (366)
T ss_dssp --CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC-------
T ss_pred chhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecccccCcc
Confidence 22225667788999999988999999999999999877643
No 5
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=99.97 E-value=1.1e-30 Score=228.13 Aligned_cols=165 Identities=22% Similarity=0.354 Sum_probs=134.3
Q ss_pred CCCccccCcHHHHHHhc---CCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhc--CCeEEEEecCCCCCHHHHHHcCCC
Q 024705 97 RGPVISTGSLKLDLALG---IGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL--GGYCAYLDVENALDPSLAEAMGID 171 (264)
Q Consensus 97 ~~~~i~tG~~~LD~~l~---~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~--g~~v~~~~~e~~~~~~~~~~~g~~ 171 (264)
..++++||+++||.+|| +||+++| +++|+||||+|||||+++++.++++. |++|+|++.|++..+.+++++|++
T Consensus 3 ~~~risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd 81 (333)
T 3io5_A 3 HMDVVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVD 81 (333)
T ss_dssp ---CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCC
T ss_pred CCCEecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCC
Confidence 35789999999999998 5899999 99999999999999999999999876 889999999999999999999999
Q ss_pred ccceeEeCCCCHHHH-HHHHHHH--hhcCCccEEEEcCccccccccccCCCcCCCCcH--HHHHHHHHHHHHHHHHHhcc
Q 024705 172 AENLLIAQPDSAENL-LSVVDTL--TKSGSIDVIVVDSVAALIPKCEIGVPINGMYSD--AQSRIMTQALRKIHYSLCQS 246 (264)
Q Consensus 172 ~~~l~~~~~~~~ee~-~~~i~~~--~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~--~q~r~i~~~L~~l~~~l~~~ 246 (264)
.+++.+.++.+.+++ ++.++.+ ++...+++|||||+++++++.++++++++...+ .|+|.+++.|++|...++++
T Consensus 82 ~d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~ 161 (333)
T 3io5_A 82 PERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTK 161 (333)
T ss_dssp GGGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998 8777766 677889999999999999767888776654434 68899999999999999999
Q ss_pred CcEEEEEcccchHhhhc
Q 024705 247 HTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 247 g~tVi~i~h~~~~~~~~ 263 (264)
|++||++||+++ +...
T Consensus 162 ~i~vi~tNQV~k-~G~~ 177 (333)
T 3io5_A 162 NIPCIAINHTYE-TQEM 177 (333)
T ss_dssp TCEEEEEEEC-------
T ss_pred CCEEEEECCeee-cCcc
Confidence 999999999987 5543
No 6
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.97 E-value=1.9e-29 Score=261.83 Aligned_cols=198 Identities=52% Similarity=0.751 Sum_probs=179.1
Q ss_pred HHHHHHHHHHHHHHHhcCCccccccccccCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 65 QKDNALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 65 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
++.+.|..++.|+++.||++..+++.+.. ..+.+.+|||...||.+||+||+|+|.+++|+||.+|||||++++.++++
T Consensus 1721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~d~~l~~gg~p~g~~~e~~~~~~~g~~~~~~~~~~~~ 1799 (2050)
T 3cmu_A 1721 NKQKALAAALGQIEKQFGKGSIMRLGEDR-SMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 1799 (2050)
T ss_dssp THHHHHHHHHHHHHHHHCTTSEEEGGGCT-TTCCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCcceEECCCCc-ccCCCcccCCcHHHHHhhCCCCCcCCcEEEEECCCCcCHHHHHHHHHHHH
Confidence 57889999999999999999999998743 46789999999999999999999999999999999999999999999999
Q ss_pred hhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCC
Q 024705 145 QKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMY 224 (264)
Q Consensus 145 ~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~ 224 (264)
++.|+.++|+|.|...++.+++.+|++.+++.+.+|++.|+.++++..+++++.+++|||||+.++.|+.+++++.++..
T Consensus 1800 ~~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~p~~~~~~~~~~~~ 1879 (2050)
T 3cmu_A 1800 QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 1879 (2050)
T ss_dssp HTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHC-------
T ss_pred hhcCCEEEEEcCccccCHHHHHHcCCCHHHeEEecCCcHHHHHHHHHHHHhcCCCcEEEEcchhhcCcHHHhcCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 225 SDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 225 ~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
.|.|+|.|++.|+++...+.+.+|++|++||++.++.-.
T Consensus 1880 ~~~~~r~~~~~~r~~~~~~~~~~~~~~~~~q~r~~~~~~ 1918 (2050)
T 3cmu_A 1880 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVM 1918 (2050)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTTCEEEEEECCC------
T ss_pred hhHHHHHHHHHHHHHHhhhccCceEEEEhhHhHHHhccc
Confidence 999999999999999999999999999999999998644
No 7
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.96 E-value=4.7e-29 Score=256.76 Aligned_cols=199 Identities=51% Similarity=0.744 Sum_probs=177.0
Q ss_pred hHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHH
Q 024705 64 MQKDNALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 64 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~ 143 (264)
+.+...|..++.|+++.||++..+.+.... ....+.+|||+..||.+||+||+|+|.+++|+||+|+|||||+++++++
T Consensus 1376 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~tG~~~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~ 1454 (1706)
T 3cmw_A 1376 ENKQKALAAALGQIEKQFGKGSIMRLGEDR-SMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 1454 (1706)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGSEEGGGCG-GGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhcCCccEEECCCCC-CCcCceecCCCHHHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 467888999999999999999998777533 3468999999999999999889999999999999999999999999999
Q ss_pred HhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCC
Q 024705 144 AQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGM 223 (264)
Q Consensus 144 ~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~ 223 (264)
++++|+.++||+.|+..++..++.+|++.+++.+.+|++.|+.++.++.+++++.+++|||||+.++.|+.+.+++.++.
T Consensus 1455 ~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~ 1534 (1706)
T 3cmw_A 1455 AQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDS 1534 (1706)
T ss_dssp HHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC------
T ss_pred HHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCcccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 224 YSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 224 ~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
..|.|+|.+++.|++|...+++.|+++|++||++.++.-+
T Consensus 1535 ~~~~~ar~m~~~lr~l~~~~~~~~~~~i~~~~~~~~~~~~ 1574 (1706)
T 3cmw_A 1535 HMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVM 1574 (1706)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHTCEEEEEECBC------
T ss_pred chhHHHHHHHHHHHHHHHHHHhCCcEEEEeecccccccee
Confidence 9999999999999999999999999999999999887543
No 8
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.95 E-value=2e-27 Score=244.71 Aligned_cols=199 Identities=51% Similarity=0.744 Sum_probs=177.2
Q ss_pred hHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHH
Q 024705 64 MQKDNALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 64 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~ 143 (264)
.++...|+.++.++++.||++..+.+.+.. ......++||+++||.++++||+++|++++|+||||+|||||+++++.+
T Consensus 328 ~~~~~~l~~a~~~i~~~fg~~~~~~l~~~~-~~~~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 328 ENKQKALAAALGQIEKQFGKGSIMRLGEDR-SMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGSEEGGGCG-GGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCCCcceeccccc-cccCceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 356788999999999999999988777643 2467899999999999997789999999999999999999999999999
Q ss_pred HhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCC
Q 024705 144 AQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGM 223 (264)
Q Consensus 144 ~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~ 223 (264)
++..|++|+||++|++..+.+++++|++.+++.+.++.+.+++.+.++.+++..++++|||||++.+.+..+.++.+++.
T Consensus 407 ~~~~G~~vlyis~E~s~~~~~a~~lGvd~~~L~i~~~~~~e~~l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~ 486 (1706)
T 3cmw_A 407 AQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDS 486 (1706)
T ss_dssp HHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCC
T ss_pred HHHhCCCeEEEEccCchHHHHHHHcCCCHHHeEEcCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHhhcccccccccccc
Confidence 99999999999999999998899999999999999999999999999888888899999999999998655555555544
Q ss_pred CcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 224 YSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 224 ~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
..+.+.+.+++.+++|...+++.|++||++||++++++.+
T Consensus 487 ~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~ 526 (1706)
T 3cmw_A 487 HMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVM 526 (1706)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCC
T ss_pred chhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccc
Confidence 4457888899999999999999999999999999886654
No 9
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=99.95 E-value=2.5e-27 Score=246.20 Aligned_cols=198 Identities=52% Similarity=0.751 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHHHHhcCCccccccccccCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 65 QKDNALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 65 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
++...|+.+++++++.||++..+.+.... ......++||+++||.++|+||+++|++++|+||||+|||||+++++.++
T Consensus 329 ~~~~~l~~a~~~i~~~~g~~~~~~l~~~~-~~~~~~I~TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~ 407 (2050)
T 3cmu_A 329 NKQKALAAALGQIEKQFGKGSIMRLGEDR-SMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (2050)
T ss_dssp THHHHHHHHHHHHHHHHCTTSEEEGGGCT-TTSCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCcCcceeccccc-ccCCceeeCCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 46788999999999999999998877643 35688999999999999987899999999999999999999999999999
Q ss_pred hhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCC
Q 024705 145 QKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMY 224 (264)
Q Consensus 145 ~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~ 224 (264)
+..|++|+||++|++..+.+++++|++.+++.+.++.+.+++++.++.+++..++++|||||++.+.++.++++.+++..
T Consensus 408 a~~G~~vlyis~E~s~~~~~a~~lGvd~~~L~I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~ 487 (2050)
T 3cmu_A 408 QREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSH 487 (2050)
T ss_dssp HTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCC
T ss_pred HhcCCeEEEEEcCCCHHHHHHHHcCCCHHHeEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccch
Confidence 99999999999999999988999999999999999999999999999888888999999999999996556655555444
Q ss_pred cHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 225 SDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 225 ~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
.+.|.+.+++.|++|...+++.|++||++||+++.++.+
T Consensus 488 ~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~ 526 (2050)
T 3cmu_A 488 MGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVM 526 (2050)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccc
Confidence 457888899999999999999999999999999887654
No 10
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=99.92 E-value=6.2e-25 Score=194.95 Aligned_cols=190 Identities=24% Similarity=0.294 Sum_probs=130.5
Q ss_pred hHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHH
Q 024705 64 MQKDNALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 64 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~ 143 (264)
....+.+..+..++.+.|+++..+... ......++||++.||.+++ ||+++|++++|+||||+|||+|+++++.+
T Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~i~TG~~~LD~~L~-GGl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 56 STAQKIIKEARDALDIRFKTALEVKKE----RMNVKKISTGSQALDGLLA-GGIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp ----------------CCCCHHHHHHH----HCSCCEECCSCHHHHHHTT-TSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCccchhhhhhh----hccCCcccCCchhHHHhcC-CCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 334455555666777777777664321 1357899999999999999 99999999999999999999999999998
Q ss_pred Hhhc------CCeEEEEecCCCCCH----HHHHHcCCCcc----ceeEeCCCCHHH---HHHHHHHHhhc-CCccEEEEc
Q 024705 144 AQKL------GGYCAYLDVENALDP----SLAEAMGIDAE----NLLIAQPDSAEN---LLSVVDTLTKS-GSIDVIVVD 205 (264)
Q Consensus 144 ~~~~------g~~v~~~~~e~~~~~----~~~~~~g~~~~----~l~~~~~~~~ee---~~~~i~~~~~~-~~~~~vvID 205 (264)
++.. +++|+|+++|+.... .+++++|++++ ++.+.++.+.++ ++..+...+.. .++++||||
T Consensus 131 ~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVID 210 (324)
T 2z43_A 131 VQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVD 210 (324)
T ss_dssp TTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEET
T ss_pred HhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEe
Confidence 7655 789999999998655 35677898874 677777777774 44556666666 789999999
Q ss_pred CccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhh
Q 024705 206 SVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLK 262 (264)
Q Consensus 206 sl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~ 262 (264)
|++.+.. .++.+. ++ .......+.+.++.|...++++|++||++||+.++.+.
T Consensus 211 sl~~l~~-~~~~~~-g~--~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~ 263 (324)
T 2z43_A 211 SVTSHFR-AEYPGR-EN--LAVRQQKLNKHLHQLTRLAEVYDIAVIITNQVMARPDM 263 (324)
T ss_dssp TTTHHHH-HHSCTT-TS--HHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC------
T ss_pred CcHHHhh-hhhcCc-cc--HHHHHHHHHHHHHHHHHHHHHhCCEEEEEcceeecCCC
Confidence 9999883 333321 11 11223346677777777779999999999999987653
No 11
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=99.92 E-value=1e-24 Score=195.00 Aligned_cols=189 Identities=25% Similarity=0.332 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHHHhcCCccccccccccCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 65 QKDNALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 65 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
...+.+..+.+++.+.|+++..+.-.. .....++||++.||.+++ ||+++|++++|+||||+|||+|+++++.++
T Consensus 72 ~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~~i~TG~~~LD~~Lg-GGl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 72 KVDKIKEAANKLIEPGFLTAFEYSEKR----KMVFHITTGSQEFDKLLG-GGIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp --------------CCSEEHHHHHHHG----GGCCCBCCSCHHHHHHTT-SSBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcccCCCcHHHHHhhh----cccceeecCChhHHHHhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 334455556666666666665543211 346889999999999999 999999999999999999999999999987
Q ss_pred hh------cCCeEEEEecCCCCCHH----HHHHcCCCc----cceeEeCCCCHHHH---HHHHHHHhhc--CCccEEEEc
Q 024705 145 QK------LGGYCAYLDVENALDPS----LAEAMGIDA----ENLLIAQPDSAENL---LSVVDTLTKS--GSIDVIVVD 205 (264)
Q Consensus 145 ~~------~g~~v~~~~~e~~~~~~----~~~~~g~~~----~~l~~~~~~~~ee~---~~~i~~~~~~--~~~~~vvID 205 (264)
+. .+++++|+++|+..... +++++|+++ +++.+.++.+.+++ +..+...+.. .++++||||
T Consensus 147 ~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVID 226 (343)
T 1v5w_A 147 QLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIID 226 (343)
T ss_dssp TSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEE
T ss_pred hcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEe
Confidence 65 57899999999986653 677789887 47777777666644 4445566666 789999999
Q ss_pred CccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhh
Q 024705 206 SVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLK 262 (264)
Q Consensus 206 sl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~ 262 (264)
|++.++. .++.+. ++ .......+.+.++.|.+.++++|++||++||+.++.+.
T Consensus 227 sl~~l~~-~~~~~~-g~--~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~~~~~~ 279 (343)
T 1v5w_A 227 SIMALFR-VDFSGR-GE--LAERQQKLAQMLSRLQKISEEYNVAVFVTNQMTADPGA 279 (343)
T ss_dssp TSGGGHH-HHCCGG-GC--HHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC------
T ss_pred chHHHHH-HHhccc-cc--HHHHHHHHHHHHHHHHHHHHHhCCEEEEEeeceecCCC
Confidence 9999984 343321 11 11223346677777777779999999999999987654
No 12
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=99.91 E-value=4.4e-24 Score=189.15 Aligned_cols=192 Identities=21% Similarity=0.250 Sum_probs=141.8
Q ss_pred cchHHHHHHHHHHHHHHHhcCCccccccccccCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHH
Q 024705 62 KIMQKDNALRLALSQLANDFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVI 141 (264)
Q Consensus 62 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~ 141 (264)
+.+...+.+..+.+++...|+++..+... ......++||++.||.+++ ||+++|++++|+||||+|||+|+++++
T Consensus 45 s~~~a~~~i~~a~~~~~~~~~~~~~~~~~----~~~~~~i~TG~~~LD~~l~-GGl~~g~i~~i~G~~gsGKT~la~~la 119 (322)
T 2i1q_A 45 SEKAAAKMIMGARDLCDLGFKSGIDLLKQ----RSTVWKLSTSSSELDSVLG-GGLESQSVTEFAGVFGSGKTQIMHQSC 119 (322)
T ss_dssp CHHHHHHHHHHHHHHTTCSCCCTHHHHHH----HTTCCEECCSCHHHHHHTT-SSEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhhcCCcHHHHHHH----hccCCeecCCChhHHHhcC-CCccCCeEEEEECCCCCCHHHHHHHHH
Confidence 33444555666666777777776664221 1357899999999999999 999999999999999999999999999
Q ss_pred HHHhh------------cC----CeEEEEecCCCCCH----HHHHHcCCCc----cceeEeCCCCHHH---HHHHHHHHh
Q 024705 142 KEAQK------------LG----GYCAYLDVENALDP----SLAEAMGIDA----ENLLIAQPDSAEN---LLSVVDTLT 194 (264)
Q Consensus 142 ~~~~~------------~g----~~v~~~~~e~~~~~----~~~~~~g~~~----~~l~~~~~~~~ee---~~~~i~~~~ 194 (264)
.+++. .| ++|+|+++|+.... .+++++|++. +++.+.++.+.++ ++..+...+
T Consensus 120 ~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~ 199 (322)
T 2i1q_A 120 VNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLI 199 (322)
T ss_dssp HHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHHHHTEEEEECSSHHHHHHHHHTHHHHH
T ss_pred HHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHHhcCEEEEeCCCHHHHHHHHHHHHHHH
Confidence 87532 24 79999999998655 3667789887 4677888888775 444556666
Q ss_pred hc-CCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhh
Q 024705 195 KS-GSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLK 262 (264)
Q Consensus 195 ~~-~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~ 262 (264)
.. .++++|||||++.+.. .++++. + ........+.+.++.|...++++|++||++||+.+..+.
T Consensus 200 ~~~~~~~lvVIDsl~~l~~-~~~~~~-~--~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~ 264 (322)
T 2i1q_A 200 QEGNNIKLVVIDSLTSTFR-NEYTGR-G--KLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDA 264 (322)
T ss_dssp HTTCEEEEEEEECSSHHHH-HHCCCT-T--SHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC---
T ss_pred hhccCccEEEEECcHHHHH-HHhcCC-c--cHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCC
Confidence 66 7899999999999883 333321 1 111223356777788887789999999999999877653
No 13
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=99.89 E-value=2.2e-22 Score=178.84 Aligned_cols=156 Identities=19% Similarity=0.199 Sum_probs=120.3
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHH----HHcCCCc
Q 024705 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLA----EAMGIDA 172 (264)
Q Consensus 97 ~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~----~~~g~~~ 172 (264)
...+++||++.||.+++ |+++|++++|+|+||+|||||+++++.+++..|.+|+||+.|++..+... ...+++.
T Consensus 25 ~~~gi~TG~~~LD~~~g--Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rlls~~~~v~~ 102 (338)
T 4a1f_A 25 EVTGIPTGFVQLDNYTS--GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRALSDLTSINM 102 (338)
T ss_dssp CCCSBCCSCHHHHHHHC--SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHHHHHHCCCH
T ss_pred CcCcccCCChHHHHHhc--CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHhhCCCH
Confidence 56889999999999996 99999999999999999999999999999999999999999998776221 1123332
Q ss_pred c-------------------------ceeEeCC--CCHHHHHHHHHHHhhcC-CccEEEEcCccccccccccCCCcCCCC
Q 024705 173 E-------------------------NLLIAQP--DSAENLLSVVDTLTKSG-SIDVIVVDSVAALIPKCEIGVPINGMY 224 (264)
Q Consensus 173 ~-------------------------~l~~~~~--~~~ee~~~~i~~~~~~~-~~~~vvIDsl~~~~~~~~~~~~~~~~~ 224 (264)
+ ++++.+. .+++++...++.+...+ ++++||||+++.+.......++.
T Consensus 103 ~~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~r~---- 178 (338)
T 4a1f_A 103 HDLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKERH---- 178 (338)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHHHHHHCC----
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCCCCCChH----
Confidence 1 2444443 36889999898887777 89999999999987421111111
Q ss_pred cHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 225 SDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 225 ~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
.+...+++.|+.++ +++|++||+++|+++..+.|
T Consensus 179 --~ei~~isr~LK~lA---kel~vpVi~lsQl~R~~e~r 212 (338)
T 4a1f_A 179 --EQIAEISRELKTLA---RELEIPIIALVQLNRSLENR 212 (338)
T ss_dssp --CCHHHHHHHHHHHH---HHHTSCEEEEEECCGGGGGS
T ss_pred --HHHHHHHHHHHHHH---HHcCCeEEEEEecCcccccc
Confidence 23344555555555 99999999999999988764
No 14
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.88 E-value=4.2e-22 Score=168.40 Aligned_cols=161 Identities=24% Similarity=0.312 Sum_probs=113.3
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhh------cCCeEEEEecCCCCCH----HHHH
Q 024705 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK------LGGYCAYLDVENALDP----SLAE 166 (264)
Q Consensus 97 ~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~------~g~~v~~~~~e~~~~~----~~~~ 166 (264)
+.+.++||++.||.+++ ||+++|++++|+||||+|||||+.+++..++. .+++++|++.++.... .+++
T Consensus 2 ~~~~i~tG~~~LD~~l~-ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~ 80 (243)
T 1n0w_A 2 EIIQITTGSKELDKLLQ-GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAE 80 (243)
T ss_dssp CCCEECCSCHHHHHHTT-TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHH
T ss_pred CceEecCCChHHHHhhc-CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHH
Confidence 45789999999999999 99999999999999999999999999987543 3688999999986554 3566
Q ss_pred HcCCCc----cceeEeCCCCHHHHHHH---HHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHH
Q 024705 167 AMGIDA----ENLLIAQPDSAENLLSV---VDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKI 239 (264)
Q Consensus 167 ~~g~~~----~~l~~~~~~~~ee~~~~---i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l 239 (264)
.+|+++ +++.+..+.+.++.... +...+...++++++||+++.... ..+++.. ..+.+++.+...+..+
T Consensus 81 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~-~~~~~~~---~~~~r~~~~~~~~~~l 156 (243)
T 1n0w_A 81 RYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYR-TDYSGRG---ELSARQMHLARFLRML 156 (243)
T ss_dssp HTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-----------CHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHhhCeEEEecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH-HHhcCCc---cHHHHHHHHHHHHHHH
Confidence 789887 57777777776654433 45555567899999999999874 2222210 0122233345555666
Q ss_pred HHHHhccCcEEEEEcccchHhhh
Q 024705 240 HYSLCQSHTLIIFLNQVKVLLLK 262 (264)
Q Consensus 240 ~~~l~~~g~tVi~i~h~~~~~~~ 262 (264)
...+++.|++||+++|..+..+.
T Consensus 157 ~~~~~~~~~tvi~~~h~~~~~~~ 179 (243)
T 1n0w_A 157 LRLADEFGVAVVITNQVVAQVDG 179 (243)
T ss_dssp HHHHHHHCCEEEEEC--------
T ss_pred HHHHHHcCCEEEEEeeeeecCCC
Confidence 66668899999999999877653
No 15
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.88 E-value=4.4e-22 Score=180.92 Aligned_cols=159 Identities=28% Similarity=0.427 Sum_probs=116.9
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhh------cCCeEEEEecCCCCCH----HHHH
Q 024705 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK------LGGYCAYLDVENALDP----SLAE 166 (264)
Q Consensus 97 ~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~------~g~~v~~~~~e~~~~~----~~~~ 166 (264)
...+++||+++||++|+ ||+++|++++|+||||+|||||+++++..... .+++++||+.++.... .+++
T Consensus 156 ~~~~i~TG~~~LD~lLg-GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~ 234 (400)
T 3lda_A 156 ELICLTTGSKNLDTLLG-GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQ 234 (400)
T ss_dssp TSCEECCSCHHHHHHTT-TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHH
T ss_pred cCCccccCChhHHHHhc-CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHH
Confidence 46899999999999999 99999999999999999999999999876654 3678999999998765 3567
Q ss_pred HcCCCcc----ceeEeCCCCHHHHH---HHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHH
Q 024705 167 AMGIDAE----NLLIAQPDSAENLL---SVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKI 239 (264)
Q Consensus 167 ~~g~~~~----~l~~~~~~~~ee~~---~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l 239 (264)
++|++++ ++.+....+.++.. ..+...+...++++++||+++.++. .++.+. + ..+.+++.+.+.+..|
T Consensus 235 ~~gl~~~~vleni~~~~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~-~~~sg~-g--~l~~Rq~~l~~il~~L 310 (400)
T 3lda_A 235 RFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR-TDFSGR-G--ELSARQMHLAKFMRAL 310 (400)
T ss_dssp HTTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC--------C--CHHHHHHHHHHHHHHH
T ss_pred HcCCChHhHhhcEEEeccCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCc-hhhcCc-c--chHHHHHHHHHHHHHH
Confidence 8899876 66777776665443 3344455557899999999999885 344331 1 1123344455566666
Q ss_pred HHHHhccCcEEEEEcccchHh
Q 024705 240 HYSLCQSHTLIIFLNQVKVLL 260 (264)
Q Consensus 240 ~~~l~~~g~tVi~i~h~~~~~ 260 (264)
...++++|++||++||++...
T Consensus 311 ~~lake~gitVIlv~Hv~~~~ 331 (400)
T 3lda_A 311 QRLADQFGVAVVVTNQVVAQV 331 (400)
T ss_dssp HHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHcCCEEEEEEeecccC
Confidence 666689999999999996544
No 16
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=99.88 E-value=7.8e-22 Score=174.34 Aligned_cols=155 Identities=19% Similarity=0.205 Sum_probs=117.7
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHH--HH--HHcCCCc
Q 024705 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPS--LA--EAMGIDA 172 (264)
Q Consensus 97 ~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~--~~--~~~g~~~ 172 (264)
...+++||++.||.++| |+++|++++|+|+||+|||||+++++.+++..|.+|+||+.|++..+. +. ...|++.
T Consensus 47 ~~~~i~TG~~~LD~~lg--Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~~~l~~R~~~~~~~i~~ 124 (315)
T 3bh0_A 47 NITGVPSGFTELDRMTY--GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTAGSINA 124 (315)
T ss_dssp SCCSBCCSCHHHHHHHS--SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCHHHHHHHHHHHHTTCCH
T ss_pred CCCCccCChHHHHhhcC--CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHcCCCH
Confidence 45789999999999995 999999999999999999999999999999888999999999887652 21 1224432
Q ss_pred ---------------------------cceeEeCC--CCHHHHHHHHHHHhhcCCcc--EEEEcCccccccccccCCCcC
Q 024705 173 ---------------------------ENLLIAQP--DSAENLLSVVDTLTKSGSID--VIVVDSVAALIPKCEIGVPIN 221 (264)
Q Consensus 173 ---------------------------~~l~~~~~--~~~ee~~~~i~~~~~~~~~~--~vvIDsl~~~~~~~~~~~~~~ 221 (264)
.++++.+. .+.+++...++.+.+..+++ +||||+++.+... . .
T Consensus 125 ~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~~~~~~~lVVID~l~~l~~~-~---~-- 198 (315)
T 3bh0_A 125 QKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPA-K---A-- 198 (315)
T ss_dssp HHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHTSSSCCEEEEEECGGGSBCS-C---T--
T ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCchhcCCC-C---C--
Confidence 13444443 46888988888888777899 9999999998741 1 0
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhh
Q 024705 222 GMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLK 262 (264)
Q Consensus 222 ~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~ 262 (264)
.. .....+...++.|...++++|++||+++|+++..+.
T Consensus 199 ~~---~r~~~i~~~~~~Lk~lAk~~~i~vi~lsql~r~~e~ 236 (315)
T 3bh0_A 199 ND---SRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQ 236 (315)
T ss_dssp TS---CHHHHHHHHHHHHHHHHHHHTCEEEEEECCCGGGTT
T ss_pred CC---CHHHHHHHHHHHHHHHHHHhCCeEEEEeecCccccc
Confidence 11 112234444555555559999999999999887654
No 17
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.87 E-value=1.1e-21 Score=166.14 Aligned_cols=146 Identities=23% Similarity=0.319 Sum_probs=111.5
Q ss_pred CccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH--HHHHHcCCCcc---
Q 024705 99 PVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAE--- 173 (264)
Q Consensus 99 ~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~--~~~~~~g~~~~--- 173 (264)
++++||++.||.+++ ||+++|++++|+||||+|||||+.+++..+++.+++++|++.|+.... .++..+|++++
T Consensus 3 ~~i~tG~~~LD~~l~-gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~g~~~~~~~ 81 (247)
T 2dr3_A 3 RRVKTGIPGVDEILH-GGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMAQFGWDVKPYE 81 (247)
T ss_dssp CEECCCCTTHHHHTT-TSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHHTTTCCCHHHH
T ss_pred ccccCCchhHHHHcC-CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHcCCCHHHHh
Confidence 578999999999999 999999999999999999999999999999988999999999987554 34556777754
Q ss_pred ---ceeEeC-------------------CCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHH
Q 024705 174 ---NLLIAQ-------------------PDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRI 231 (264)
Q Consensus 174 ---~l~~~~-------------------~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~ 231 (264)
++.+.+ +.+.+++...+...++..++++++||+++.+... + . .+.+
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~-~----~------~~~~- 149 (247)
T 2dr3_A 82 EKGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYIN-K----P------AMAR- 149 (247)
T ss_dssp HHTSEEEEECSTTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTT-C----G------GGHH-
T ss_pred hCCcEEEEecchhhcccccccccccccCccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcC-C----H------HHHH-
Confidence 232222 2356677777777776678999999999988621 1 0 1122
Q ss_pred HHHHHHHHHHHHhccCcEEEEEcccchH
Q 024705 232 MTQALRKIHYSLCQSHTLIIFLNQVKVL 259 (264)
Q Consensus 232 i~~~L~~l~~~l~~~g~tVi~i~h~~~~ 259 (264)
+.+..+.+.+++.|++||+++|..+.
T Consensus 150 --~~l~~l~~~~~~~~~~vi~~~h~~~~ 175 (247)
T 2dr3_A 150 --SIILQLKRVLAGTGCTSIFVSQVSVG 175 (247)
T ss_dssp --HHHHHHHHHHHHTTCEEEEEEECC--
T ss_pred --HHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 33444555558899999999999875
No 18
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=99.87 E-value=4.8e-21 Score=176.62 Aligned_cols=156 Identities=19% Similarity=0.211 Sum_probs=119.6
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHH----HHHcCCCc
Q 024705 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSL----AEAMGIDA 172 (264)
Q Consensus 97 ~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~----~~~~g~~~ 172 (264)
...+++||+++||.++| |+++|++++|+|+||+|||+|+++++.+++..|.+|+||+.|++..+.. +...|++.
T Consensus 176 ~~~gi~TG~~~LD~~lg--Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ql~~R~~~~~~~i~~ 253 (444)
T 3bgw_A 176 NITGVPSGFTELDRMTY--GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIKRLIVTAGSINA 253 (444)
T ss_dssp SCCSBCCSCHHHHHHHS--SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTHHHHHHHHHHSCCCH
T ss_pred CCCCcCCCcHHHHhhcC--CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHHHcCCCH
Confidence 46789999999999995 9999999999999999999999999999998899999999999988732 22234431
Q ss_pred ---------------------------cceeEeCC--CCHHHHHHHHHHHhhcCCcc--EEEEcCccccccccccCCCcC
Q 024705 173 ---------------------------ENLLIAQP--DSAENLLSVVDTLTKSGSID--VIVVDSVAALIPKCEIGVPIN 221 (264)
Q Consensus 173 ---------------------------~~l~~~~~--~~~ee~~~~i~~~~~~~~~~--~vvIDsl~~~~~~~~~~~~~~ 221 (264)
.++++.+. .+++++...++.+.+..+++ +||||+++.+... ..
T Consensus 254 ~~l~~g~~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~~~~~~~lIVID~Lq~~~~~-~~----- 327 (444)
T 3bgw_A 254 QKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPA-KA----- 327 (444)
T ss_dssp HHHHHTGGGTCCSCHHHHHHHHHHHHTSCEEEECCSSCBHHHHHHHHHHHHHHSCSSCEEEEEECSTTSBCS-CS-----
T ss_pred HHHhcccCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEecHHhccCC-CC-----
Confidence 12333333 47889998888888778999 9999999998742 10
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 222 GMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 222 ~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
......+ +....+.|...++++|++||+++|+++..+.+
T Consensus 328 ~~~r~~~---i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r 366 (444)
T 3bgw_A 328 NDSRTNQ---ISQISRDLKKMARELDVVVIALSQLSRQVEQR 366 (444)
T ss_dssp SSCHHHH---HHHHHHHHHHHHHHHTCEEEEEEECCGGGGGS
T ss_pred CCCHHHH---HHHHHHHHHHHHHHhCCeEEEEecCCcccccc
Confidence 1111223 44444555555599999999999999877653
No 19
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=99.87 E-value=4.3e-22 Score=168.80 Aligned_cols=151 Identities=21% Similarity=0.291 Sum_probs=111.4
Q ss_pred CCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHh-hcCCeEEEEecCCCCCH--HHHHHcCCCc
Q 024705 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQ-KLGGYCAYLDVENALDP--SLAEAMGIDA 172 (264)
Q Consensus 96 ~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~-~~g~~v~~~~~e~~~~~--~~~~~~g~~~ 172 (264)
.+.+++|||+++||++++ ||+++|++++|+|+||+|||+|+++++.+.+ ..+++|+|++.|++... .++.+.+.+.
T Consensus 7 ~~i~ri~TGi~~LD~~l~-GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~ 85 (251)
T 2zts_A 7 QPVRRVKSGIPGFDELIE-GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDF 85 (251)
T ss_dssp -CCCEECCSCTTTGGGTT-TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCH
T ss_pred CCCCeecCCcHHHHHhhc-CCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCCh
Confidence 467899999999999999 9999999999999999999999999998765 45788999999998766 3444455443
Q ss_pred c------ceeE------------------eCCCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHH
Q 024705 173 E------NLLI------------------AQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQ 228 (264)
Q Consensus 173 ~------~l~~------------------~~~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q 228 (264)
+ ++.+ ......+++...+...+...++++++||+++.+.... .. . .+
T Consensus 86 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~~--~~-~------~~ 156 (251)
T 2zts_A 86 EKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRL--EE-E------RK 156 (251)
T ss_dssp HHHHHTTSEEEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHS--SS-G------GG
T ss_pred HHHHhcCcchhhhhHHHHhhcccchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhhc--cC-h------HH
Confidence 2 1111 1223456777778888888899999999999886321 11 1 22
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEEcccchH
Q 024705 229 SRIMTQALRKIHYSLCQSHTLIIFLNQVKVL 259 (264)
Q Consensus 229 ~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~ 259 (264)
.+ ..++.|...+++.|+++++++|..+.
T Consensus 157 ~~---~~~~~L~~~a~~~~i~vi~~~q~~~~ 184 (251)
T 2zts_A 157 IR---EVLLKLNTILLEMGVTTILTTEAPDP 184 (251)
T ss_dssp HH---HHHHHHHHHHHHHCCEEEEEECCC--
T ss_pred HH---HHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 23 34455555559999999999998654
No 20
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.86 E-value=5.7e-21 Score=171.06 Aligned_cols=186 Identities=24% Similarity=0.278 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHH-hcCCccccccccccCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHh
Q 024705 67 DNALRLALSQLAN-DFGKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 67 ~~~l~~~l~~l~~-~~~~~~~~~~~~~~~~~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
.+.++.+.+++.+ .|.++..+.-. ......++||++.||.+|+ ||+++|++++|+||||+|||||+++++..++
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~isTG~~~LD~lL~-ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~ 156 (349)
T 1pzn_A 82 LKIIQAARKAANLGTFMRADEYLKK----RATIGRISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLAHTLAVMVQ 156 (349)
T ss_dssp HHHHHHHHHHCSTTSCEEHHHHHHH----HHTCCEECCSCHHHHHHHT-SSEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhccccCCccHHHHHhh----hccCCeecCCCHHHHHHhc-CCCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444445555544 44444332211 1346889999999999999 9999999999999999999999999999874
Q ss_pred hc------CCeEEEEecCCCCCH----HHHHHcCCCc----cceeEeCCCCH---HHHHHHHHHHhhc-----CCccEEE
Q 024705 146 KL------GGYCAYLDVENALDP----SLAEAMGIDA----ENLLIAQPDSA---ENLLSVVDTLTKS-----GSIDVIV 203 (264)
Q Consensus 146 ~~------g~~v~~~~~e~~~~~----~~~~~~g~~~----~~l~~~~~~~~---ee~~~~i~~~~~~-----~~~~~vv 203 (264)
.. +++|+|++.+..... .+++..+++. +++.+....+. .+.+..+...+.. .+++++|
T Consensus 157 ~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 157 LPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp SCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred cchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 32 468899999987543 2455566654 45555554443 3445556666655 6899999
Q ss_pred EcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhh
Q 024705 204 VDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLL 261 (264)
Q Consensus 204 IDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~ 261 (264)
||++++.+. .+..+.. ......+.+.+.+..|...+++.|++||++||+....+
T Consensus 237 lDs~ta~ld-~~~~~~~---~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~ 290 (349)
T 1pzn_A 237 VDSLTSHFR-SEYIGRG---ALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPD 290 (349)
T ss_dssp EETSSTTHH-HHCCSTT---THHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----
T ss_pred EeCchHhhh-hhhcccc---cHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccc
Confidence 999999883 3332210 11122233455566666666889999999999987654
No 21
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=99.85 E-value=1.9e-20 Score=172.79 Aligned_cols=158 Identities=19% Similarity=0.182 Sum_probs=114.6
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhh-cCCeEEEEecCCCCCHHH----HHHcCCC
Q 024705 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAYLDVENALDPSL----AEAMGID 171 (264)
Q Consensus 97 ~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~-~g~~v~~~~~e~~~~~~~----~~~~g~~ 171 (264)
...+++||++.||.++| |+++|++++|+|+||+|||+|+++++.+++. .|.+|+||+.|++..+.. +...|++
T Consensus 179 ~~~~i~tG~~~LD~~lg--Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~~~~~~i~ 256 (444)
T 2q6t_A 179 EVAGVRTGFKELDQLIG--TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCSEARID 256 (444)
T ss_dssp ----CCCSCHHHHHHHC--CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHHHHHHTTCC
T ss_pred CCCcccCCCHhhhhhcC--CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 35789999999999995 9999999999999999999999999999986 478999999999876522 2334554
Q ss_pred ccc-------------------------eeEeCC--CCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCC
Q 024705 172 AEN-------------------------LLIAQP--DSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMY 224 (264)
Q Consensus 172 ~~~-------------------------l~~~~~--~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~ 224 (264)
.++ +++.+. .+.+++...++.+....++++||||+++.+.... .+.. ..
T Consensus 257 ~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~~~--~~~~-~~- 332 (444)
T 2q6t_A 257 MNRVRLGQLTDRDFSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLMSGPG--SGKS-GE- 332 (444)
T ss_dssp TTTCCGGGCCHHHHHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGCBCC-----------
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhcCCCc--CCCC-CC-
Confidence 432 333333 3688888888888877889999999999987410 0000 01
Q ss_pred cHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhh
Q 024705 225 SDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLK 262 (264)
Q Consensus 225 ~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~ 262 (264)
.....+...++.|...+++.|++||+++|+++..+.
T Consensus 333 --~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~ 368 (444)
T 2q6t_A 333 --NRQQEIAAISRGLKALARELGIPIIALSQLSRAVEA 368 (444)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGS
T ss_pred --CHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccc
Confidence 122234444455555559999999999999887664
No 22
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.84 E-value=4.2e-20 Score=153.77 Aligned_cols=147 Identities=30% Similarity=0.474 Sum_probs=104.9
Q ss_pred ccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHH----HHHHcCCCcc--
Q 024705 100 VISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPS----LAEAMGIDAE-- 173 (264)
Q Consensus 100 ~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~----~~~~~g~~~~-- 173 (264)
+++||++.||.+++ ||+++|++++|+||||+|||||+.+++. ..+++++|++.+...... +.+..|++.+
T Consensus 1 ri~tG~~~LD~~l~-Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (220)
T 2cvh_A 1 MLSTGTKSLDSLLG-GGFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEA 76 (220)
T ss_dssp CBCCSCHHHHHHTT-SSBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHH
T ss_pred CcccCcHHHHHhhc-CCCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHH
Confidence 47999999999998 9999999999999999999999999998 568899999999855442 2344565433
Q ss_pred --ceeEeCCCCHHH---HHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCc
Q 024705 174 --NLLIAQPDSAEN---LLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHT 248 (264)
Q Consensus 174 --~l~~~~~~~~ee---~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~ 248 (264)
++.+.+..+.++ .+..++.++.. ++++++||+++....... .. . ...+.+...+..+...+++.|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~lliiD~~~~~l~~~~-~~----~---~~~~~~~~~~~~L~~l~~~~~~ 147 (220)
T 2cvh_A 77 LSRFILFTPSDFKEQRRVIGSLKKTVDS-NFALVVVDSITAHYRAEE-NR----S---GLIAELSRQLQVLLWIARKHNI 147 (220)
T ss_dssp HHHEEEECCTTTSHHHHHHHHHHHHCCT-TEEEEEEECCCCCTTGGG-GS----S---TTHHHHHHHHHHHHHHHHHHTC
T ss_pred hhcEEEEecCCHHHHHHHHHHHHHHhhc-CCCEEEEcCcHHHhhhcC-ch----H---HHHHHHHHHHHHHHHHHHHcCC
Confidence 345555544433 44555555544 799999999998873211 10 1 1122334444445445588899
Q ss_pred EEEEEcccchH
Q 024705 249 LIIFLNQVKVL 259 (264)
Q Consensus 249 tVi~i~h~~~~ 259 (264)
+||+++|..+.
T Consensus 148 ~vi~~~h~~~~ 158 (220)
T 2cvh_A 148 PVIVINQVHFD 158 (220)
T ss_dssp CEEEEECSSSS
T ss_pred EEEEEeeEEEc
Confidence 99999998763
No 23
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=99.84 E-value=2.4e-20 Score=174.57 Aligned_cols=152 Identities=9% Similarity=0.134 Sum_probs=117.2
Q ss_pred CCCCcccc-CcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhc-CCeEEEEecCCCCCHH--H--HHHcC
Q 024705 96 RRGPVIST-GSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVENALDPS--L--AEAMG 169 (264)
Q Consensus 96 ~~~~~i~t-G~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~-g~~v~~~~~e~~~~~~--~--~~~~g 169 (264)
....+++| |++.||.++| |+++|++++|+|+||+|||+|+++++.+++.. |.+|+||+.|++..+. + +...|
T Consensus 219 ~~~~~i~t~G~~~LD~~lg--Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l~~r~~~~~~~ 296 (503)
T 1q57_A 219 EESVGLLFSGCTGINDKTL--GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNR 296 (503)
T ss_dssp SCTTCSCCSSCTTHHHHHC--CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHHHHHHHHHHTT
T ss_pred cccCCccccchhhhhHhhc--ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHcC
Confidence 35678999 9999999996 89999999999999999999999999999987 8899999999987652 1 23445
Q ss_pred CCcc--------------------------ceeEeCC---CCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCc
Q 024705 170 IDAE--------------------------NLLIAQP---DSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPI 220 (264)
Q Consensus 170 ~~~~--------------------------~l~~~~~---~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~ 220 (264)
++.. ++.+.+. .+.+++...++.++...++++||||+++.+... . .
T Consensus 297 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~l~~~-~--~-- 371 (503)
T 1q57_A 297 VRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSA-S--G-- 371 (503)
T ss_dssp SCCTTCHHHHHHHHHTSHHHHHHHHHHTTTCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTCCCSC-C--S--
T ss_pred CChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchhcCCC-C--C--
Confidence 5432 2445443 578899999988888889999999999988631 1 0
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccch
Q 024705 221 NGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKV 258 (264)
Q Consensus 221 ~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~ 258 (264)
.. .....+...++.|..+++++|++||+++|+++
T Consensus 372 -~~---~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r 405 (503)
T 1q57_A 372 -ES---DERKMIDNLMTKLKGFAKSTGVVLVVICHLKN 405 (503)
T ss_dssp -CC---CHHHHHHHHHHHHHHHHHHHTCEEEEEEECCC
T ss_pred -CC---CHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCc
Confidence 11 12223444555555555999999999999986
No 24
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.83 E-value=6.4e-20 Score=169.72 Aligned_cols=156 Identities=16% Similarity=0.237 Sum_probs=117.3
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhh-cCCeEEEEecCCCCCHHH----HHHcCCC
Q 024705 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAYLDVENALDPSL----AEAMGID 171 (264)
Q Consensus 97 ~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~-~g~~v~~~~~e~~~~~~~----~~~~g~~ 171 (264)
...+++||++.||.+++ |+++|++++|+|+||+|||||+++++.+++. .|.+|+||+.|++..+.. +...|++
T Consensus 182 ~~~~i~tG~~~LD~~~g--Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~~~ 259 (454)
T 2r6a_A 182 EITGIPTGFTELDRMTS--GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNIN 259 (454)
T ss_dssp CCCSBCCSCHHHHHHHS--SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCcHHHHhhcC--CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 46799999999999995 9999999999999999999999999999987 477999999999876522 2234554
Q ss_pred cc-------------------------ceeEeCC--CCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCC
Q 024705 172 AE-------------------------NLLIAQP--DSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMY 224 (264)
Q Consensus 172 ~~-------------------------~l~~~~~--~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~ 224 (264)
.+ ++++.+. .+..++...++.++...++++||||+++.+... ... ...
T Consensus 260 ~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~~-~~~----~~~ 334 (454)
T 2r6a_A 260 AQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQGS-GRS----KEN 334 (454)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCCS-CC--------
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhccC-CCC----CCC
Confidence 32 2333333 378888888888887778999999999998742 110 011
Q ss_pred cHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhh
Q 024705 225 SDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLK 262 (264)
Q Consensus 225 ~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~ 262 (264)
...+...+++.|+.++ ++.|++||+++|+++..+.
T Consensus 335 ~~~~i~~i~~~Lk~lA---ke~~i~vi~~sql~r~~e~ 369 (454)
T 2r6a_A 335 RQQEVSEISRSLKALA---RELEVPVIALSQLSRSVEQ 369 (454)
T ss_dssp CHHHHHHHHHHHHHHH---HHHTCCEEEEECCCTTSTT
T ss_pred HHHHHHHHHHHHHHHH---HHhCCeEEEEecCCccccc
Confidence 2234444555555555 8999999999998876654
No 25
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.83 E-value=4.8e-20 Score=154.35 Aligned_cols=144 Identities=27% Similarity=0.399 Sum_probs=107.9
Q ss_pred CccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH--HHHHHcCCCccce-
Q 024705 99 PVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAENL- 175 (264)
Q Consensus 99 ~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~--~~~~~~g~~~~~l- 175 (264)
+.++||++.||.+++ ||+++|++++|+||||+|||||+.+++......+++++|++.+..... .+...+|++.+.+
T Consensus 3 ~~i~tg~~~Ld~~~~-ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (235)
T 2w0m_A 3 SRLSTGILDFDKLIQ-GGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYI 81 (235)
T ss_dssp CEECCSCHHHHGGGT-TSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGB
T ss_pred ccccCCchHHHHHhc-CCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHh
Confidence 578999999999998 899999999999999999999999999988888999999999886443 2344567665532
Q ss_pred ----eEe-------------CCCCHHHHHHHHHHHhhcCCcc--EEEEcCccccccccccCCCcCCCCcHHHHHHHHHHH
Q 024705 176 ----LIA-------------QPDSAENLLSVVDTLTKSGSID--VIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQAL 236 (264)
Q Consensus 176 ----~~~-------------~~~~~ee~~~~i~~~~~~~~~~--~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L 236 (264)
.+. ...+.+++...+...+...+++ ++++|+++.+... + + ...+.+...|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~-d----~------~~~~~~~~~l 150 (235)
T 2w0m_A 82 EKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLD-K----P------AMARKISYYL 150 (235)
T ss_dssp TTTEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSS-C----G------GGHHHHHHHH
T ss_pred hCCEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcC-C----H------HHHHHHHHHH
Confidence 111 1225677776666666666899 9999999988631 1 1 2234455555
Q ss_pred HHHHHHHhccCcEEEEEcccc
Q 024705 237 RKIHYSLCQSHTLIIFLNQVK 257 (264)
Q Consensus 237 ~~l~~~l~~~g~tVi~i~h~~ 257 (264)
++++ ++.|++||+++|..
T Consensus 151 ~~~~---~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 151 KRVL---NKWNFTIYATSQYA 168 (235)
T ss_dssp HHHH---HHTTEEEEEEEC--
T ss_pred HHHH---HhCCCeEEEEeccC
Confidence 5554 78899999999998
No 26
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.83 E-value=7e-20 Score=153.36 Aligned_cols=158 Identities=27% Similarity=0.375 Sum_probs=110.7
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhh------cCCeEEEEecCCCCCH----HHHH
Q 024705 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK------LGGYCAYLDVENALDP----SLAE 166 (264)
Q Consensus 97 ~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~------~g~~v~~~~~e~~~~~----~~~~ 166 (264)
+.+.++||++.||.+++ ||+++|++++|.||||||||||+..++..... .+++++|++.+..... .+.+
T Consensus 3 ~~~~i~tG~~~LD~~l~-ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~ 81 (231)
T 4a74_A 3 TIGRISTGSKSLDKLLG-GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQ 81 (231)
T ss_dssp CCCEECCSCHHHHHHTT-SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHH
T ss_pred cCCccCCCChhHHhHhc-CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 56889999999999998 99999999999999999999999999987654 3677999998876553 3456
Q ss_pred HcCCCcc----ceeEeCCCCHHH---HHHHHHHHhh-----cCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHH
Q 024705 167 AMGIDAE----NLLIAQPDSAEN---LLSVVDTLTK-----SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQ 234 (264)
Q Consensus 167 ~~g~~~~----~l~~~~~~~~ee---~~~~i~~~~~-----~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~ 234 (264)
.+++.++ ++.+.......+ ....+...+. ..+++++++|+++..+. .++.+.. ....+.+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~-~~~~~~~---~~~~r~~~~~~ 157 (231)
T 4a74_A 82 NRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR-SEYIGRG---ALAERQQKLAK 157 (231)
T ss_dssp HTTSCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHH-HHSCSTT---HHHHHHHHHHH
T ss_pred HcCCCHHHHhhcEEEEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhc-cccCCCc---chhHHHHHHHH
Confidence 6777654 555555544332 2333444444 57899999999998874 2332210 01122222334
Q ss_pred HHHHHHHHHhccCcEEEEEcccchH
Q 024705 235 ALRKIHYSLCQSHTLIIFLNQVKVL 259 (264)
Q Consensus 235 ~L~~l~~~l~~~g~tVi~i~h~~~~ 259 (264)
.+..+...+++.|+|||+++|..+.
T Consensus 158 ~~~~l~~~~~~~g~tvi~vtH~~~~ 182 (231)
T 4a74_A 158 HLADLHRLANLYDIAVFVTNQVQAN 182 (231)
T ss_dssp HHHHHHHHHHHHTCEEEEEEECC--
T ss_pred HHHHHHHHHHHCCCeEEEEeecccC
Confidence 4555555558889999999997664
No 27
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.80 E-value=1.5e-19 Score=153.30 Aligned_cols=151 Identities=21% Similarity=0.278 Sum_probs=106.2
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHh-hcCCeEEEEecCCCCCH--HHHHHcCCCcc
Q 024705 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQ-KLGGYCAYLDVENALDP--SLAEAMGIDAE 173 (264)
Q Consensus 97 ~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~-~~g~~v~~~~~e~~~~~--~~~~~~g~~~~ 173 (264)
..+.++||++.||.+++ ||+++|++++|.||||||||||+..++.... ..+++++|++.+..... .+.+.+|+.++
T Consensus 8 ~~~~i~tg~~~lD~~l~-Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 86 (251)
T 2ehv_A 8 PVRRVKSGIPGFDELIE-GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFE 86 (251)
T ss_dssp CCCEECCSCTTTGGGTT-TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHH
T ss_pred ccceeecCCHhHHHHhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChH
Confidence 46789999999999998 9999999999999999999999999997655 67888999988776544 34556777655
Q ss_pred ce------eEe------------------CCCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHH
Q 024705 174 NL------LIA------------------QPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQS 229 (264)
Q Consensus 174 ~l------~~~------------------~~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~ 229 (264)
+. .+. .....+++...+...+...+++++++|++++..... .+ + ...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~--~d-~------~~~ 157 (251)
T 2ehv_A 87 KYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRL--EE-E------RKI 157 (251)
T ss_dssp HHHHTTSEEEEC-------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHS--SS-G------GGH
T ss_pred HHhhcCCEEEEEccccccccccccceeccCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhc--CC-H------HHH
Confidence 42 111 112345555556555666799999999999887311 11 0 111
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEcccchHh
Q 024705 230 RIMTQALRKIHYSLCQSHTLIIFLNQVKVLL 260 (264)
Q Consensus 230 r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~ 260 (264)
+ ..+..+.+.+++.|+|||+++|..+..
T Consensus 158 ~---~~l~~l~~~l~~~g~tii~vtH~~~~~ 185 (251)
T 2ehv_A 158 R---EVLLKLNTILLEMGVTTILTTEAPDPQ 185 (251)
T ss_dssp H---HHHHHHHHHHHHHCCEEEEEECCC---
T ss_pred H---HHHHHHHHHHHHCCCeEEEEECCCCCC
Confidence 1 223444444467799999999998775
No 28
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.74 E-value=3.2e-18 Score=148.36 Aligned_cols=147 Identities=18% Similarity=0.229 Sum_probs=100.5
Q ss_pred CCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhc----------CCeEEEEecCCCCCH--HHH
Q 024705 98 GPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL----------GGYCAYLDVENALDP--SLA 165 (264)
Q Consensus 98 ~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~----------g~~v~~~~~e~~~~~--~~~ 165 (264)
.+.++||+++||.+++ |+++|++++|+||||+|||||+++++..+... +++++|++.|+.... .++
T Consensus 10 ~~~i~tg~~~ld~~lg--gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~ 87 (279)
T 1nlf_A 10 LEAFAAAPPPLDYVLP--NMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRL 87 (279)
T ss_dssp HHHHHSCCCCCCEEET--TEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSCHHHHHHHH
T ss_pred HHHhcCCCCChheeEC--CccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCCHHHHHHHH
Confidence 4568999999999996 89999999999999999999999999877642 478999999987654 245
Q ss_pred HHcCCCc---------cceeEeCC-------CCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHH
Q 024705 166 EAMGIDA---------ENLLIAQP-------DSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQS 229 (264)
Q Consensus 166 ~~~g~~~---------~~l~~~~~-------~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~ 229 (264)
..+|.+. +++.+.+. .+.. ....+..++. +++++|||+++.+....+ . .....
T Consensus 88 ~~~g~~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g-~~~~i~~l~~--~~~livlDe~~~~~~~d~--~------~~~~~ 156 (279)
T 1nlf_A 88 HALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPE-WFDGLKRAAE--GRRLMVLDTLRRFHIEEE--N------ASGPM 156 (279)
T ss_dssp HHHHTTSCHHHHHHHHHHEEECCCTTSCCCTTSHH-HHHHHHHHHT--TCSEEEEECGGGGCCSCT--T------CHHHH
T ss_pred HHHHhhcChhhhhhccCceEEeecCCCCcccCCHH-HHHHHHHhcC--CCCEEEECCHHHhcCCCc--C------chHHH
Confidence 5566543 23443332 1222 2444555543 699999999999874211 0 11223
Q ss_pred HHHHHHHHHHHHHHhccCcEEEEEcccchHh
Q 024705 230 RIMTQALRKIHYSLCQSHTLIIFLNQVKVLL 260 (264)
Q Consensus 230 r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~ 260 (264)
+.+...|+.+ +++.|++||+++|..+..
T Consensus 157 ~~~~~~L~~l---~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 157 AQVIGRMEAI---AADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHH---HHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHH---HHHcCCEEEEEecCCCcc
Confidence 3334444444 488899999999998764
No 29
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.74 E-value=5.3e-17 Score=141.68 Aligned_cols=150 Identities=11% Similarity=0.183 Sum_probs=104.8
Q ss_pred CCCCcccc-CcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhc-CCeEEEEecCCCCCHHHHH----HcC
Q 024705 96 RRGPVIST-GSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVENALDPSLAE----AMG 169 (264)
Q Consensus 96 ~~~~~i~t-G~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~-g~~v~~~~~e~~~~~~~~~----~~g 169 (264)
....+++| |++.||.+.+ |+++|++++|+||||+|||||+.+++..+... |.+|+|++.|+...+...+ ..+
T Consensus 12 ~~~~~i~t~g~~~Ld~i~~--~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~ 89 (296)
T 1cr0_A 12 EESVGLLFSGCTGINDKTL--GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNR 89 (296)
T ss_dssp CCCCCBCCCSCTTHHHHHC--SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTT
T ss_pred CCcCCcccCCHHHHHHHhc--CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcC
Confidence 35678999 9999999985 99999999999999999999999999998876 5589999998754321111 012
Q ss_pred CCc--------------------------cceeEeC---CCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCc
Q 024705 170 IDA--------------------------ENLLIAQ---PDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPI 220 (264)
Q Consensus 170 ~~~--------------------------~~l~~~~---~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~ 220 (264)
.+. ..+.+.+ ..+..++...+.......++++++||+++.+.....
T Consensus 90 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDept~~~~~~~----- 164 (296)
T 1cr0_A 90 VRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVVSASG----- 164 (296)
T ss_dssp CCGGGCHHHHHHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEEEC------------
T ss_pred CChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCC-----
Confidence 221 1233432 256778777777655567899999999999763100
Q ss_pred CCCCcH-HHHHHHHHHHHHHHHHHhccCcEEEEEcccc
Q 024705 221 NGMYSD-AQSRIMTQALRKIHYSLCQSHTLIIFLNQVK 257 (264)
Q Consensus 221 ~~~~~~-~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~ 257 (264)
..+. .+.+.+.+.|++++ ++.|++||+++|..
T Consensus 165 --~~d~~~~~~~i~~~L~~la---~~~~~~vi~vsh~~ 197 (296)
T 1cr0_A 165 --ESDERKMIDNLMTKLKGFA---KSTGVVLVVICHLK 197 (296)
T ss_dssp ------CHHHHHHHHHHHHHH---HHHCCEEEEEEECC
T ss_pred --CCCHHHHHHHHHHHHHHHH---HHhCCeEEEEEecC
Confidence 0111 34455666666665 88899999999996
No 30
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.69 E-value=4.1e-16 Score=146.62 Aligned_cols=147 Identities=23% Similarity=0.236 Sum_probs=110.3
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH--HHHHHcCCCcc-
Q 024705 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAE- 173 (264)
Q Consensus 97 ~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~--~~~~~~g~~~~- 173 (264)
..+.++||+++||.+++ ||+++|++++|.||||+|||||+.+++....+.|++++|+.+++...+ .++.++|++.+
T Consensus 259 ~~~~l~~g~~~ld~vL~-g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~ 337 (525)
T 1tf7_A 259 SNVRVSSGVVRLDEMCG-GGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEE 337 (525)
T ss_dssp CCCEECCSCHHHHHHTT-SSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHH
T ss_pred ccceeecChHHHHHHhC-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHH
Confidence 46789999999999999 999999999999999999999999999988878888999999887544 23445666532
Q ss_pred -----ceeEeCC----CCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHh
Q 024705 174 -----NLLIAQP----DSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLC 244 (264)
Q Consensus 174 -----~l~~~~~----~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~ 244 (264)
.+.+... .+..+....+...+...+++++++|+++.+... . .+.|. ...+.++.+.++
T Consensus 338 ~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~--~--------~~~~~---~~~i~~ll~~l~ 404 (525)
T 1tf7_A 338 MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARG--V--------SNNAF---RQFVIGVTGYAK 404 (525)
T ss_dssp HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSS--S--------CHHHH---HHHHHHHHHHHH
T ss_pred HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEcChHHHHhh--C--------ChHHH---HHHHHHHHHHHH
Confidence 2222222 356676666666666679999999988888742 1 11232 244455555557
Q ss_pred ccCcEEEEEcccc
Q 024705 245 QSHTLIIFLNQVK 257 (264)
Q Consensus 245 ~~g~tVi~i~h~~ 257 (264)
+.|+|||+++|..
T Consensus 405 ~~g~tvilvsh~~ 417 (525)
T 1tf7_A 405 QEEITGLFTNTSD 417 (525)
T ss_dssp HTTCEEEEEEECS
T ss_pred hCCCEEEEEECcc
Confidence 8899999999997
No 31
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=99.67 E-value=5.2e-16 Score=132.89 Aligned_cols=73 Identities=14% Similarity=0.141 Sum_probs=67.9
Q ss_pred ccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH--HHHHHcCCCcc
Q 024705 100 VISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAE 173 (264)
Q Consensus 100 ~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~--~~~~~~g~~~~ 173 (264)
.++||++.||.+|+ ||+++|++++|.|.||+|||+|+.+++.+.+.+|++++|+.++++..+ ..++.+|++++
T Consensus 2 ~i~tGi~~LD~~l~-GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e~~~~l~~~~~~~G~dl~ 76 (260)
T 3bs4_A 2 SLSWEIEELDREIG-KIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISYPLQLIIRILSRFGVDVI 76 (260)
T ss_dssp CBCCSSHHHHHHHC-CBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHTTCCHH
T ss_pred cCccCcHHHHHHhC-CCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHcCCCHH
Confidence 57999999999999 999999999999999999999999999999999999999999999887 46778898865
No 32
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.59 E-value=1.2e-14 Score=136.75 Aligned_cols=151 Identities=17% Similarity=0.197 Sum_probs=106.6
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHH-HHHhhcCCeEEEEecCCCCCH--HHHHHcCCCcc
Q 024705 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVI-KEAQKLGGYCAYLDVENALDP--SLAEAMGIDAE 173 (264)
Q Consensus 97 ~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~-~~~~~~g~~v~~~~~e~~~~~--~~~~~~g~~~~ 173 (264)
....+++|++.||.+.. ||+++|++++|.||||||||||+.+++ ..+.+.+.+.+|++.++.... .+++.+|+.++
T Consensus 17 ~~~~~~~g~~~Ld~i~~-G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q 95 (525)
T 1tf7_A 17 AIAKMRTMIEGFDDISH-GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLA 95 (525)
T ss_dssp SCCEECCCCTTHHHHTT-SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHH
T ss_pred ccccccCCchhHHHhcC-CCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChH
Confidence 46789999999999987 899999999999999999999999974 455555777899998774322 34567888776
Q ss_pred ce------eEeCC------------CCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHH
Q 024705 174 NL------LIAQP------------DSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQA 235 (264)
Q Consensus 174 ~l------~~~~~------------~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~ 235 (264)
+. ..... ...+++.......+..++++++++|++.+..+.. ..+...++.+...
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~--------~lD~~~~~~l~~l 167 (525)
T 1tf7_A 96 KLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQY--------DASSVVRRELFRL 167 (525)
T ss_dssp HHHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTT--------CCHHHHHHHHHHH
T ss_pred HhhccCcEEEEecCcccchhhhhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhc--------CCHHHHHHHHHHH
Confidence 42 22211 1133444444444555789999999999887521 1222344445555
Q ss_pred HHHHHHHHhccCcEEEEEcccchHh
Q 024705 236 LRKIHYSLCQSHTLIIFLNQVKVLL 260 (264)
Q Consensus 236 L~~l~~~l~~~g~tVi~i~h~~~~~ 260 (264)
++.+ ++.|+|||+++|..+.+
T Consensus 168 l~~l----~~~g~tvl~itH~~~~~ 188 (525)
T 1tf7_A 168 VARL----KQIGATTVMTTERIEEY 188 (525)
T ss_dssp HHHH----HHHTCEEEEEEECSSSS
T ss_pred HHHH----HHCCCEEEEEecCCCCc
Confidence 5555 55799999999998764
No 33
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=99.55 E-value=2.5e-15 Score=131.80 Aligned_cols=130 Identities=21% Similarity=0.138 Sum_probs=92.8
Q ss_pred CccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEec--CCCCCHHHHHHcCCCcccee
Q 024705 99 PVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV--ENALDPSLAEAMGIDAENLL 176 (264)
Q Consensus 99 ~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~--e~~~~~~~~~~~g~~~~~l~ 176 (264)
..++||+++||.++ ||+++|.+++|+||||+|||+|+.+++.+ .|++++|++. ++... .
T Consensus 104 ~~i~TGi~~LD~lL--GGi~~gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~~~eE~v~----------~---- 164 (331)
T 2vhj_A 104 GELVGCSPVVAEFG--GHRYASGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATVRFGEPLS----------G---- 164 (331)
T ss_dssp TTCCSBCCEEEEET--TEEEESEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEEEBSCSST----------T----
T ss_pred hccccCcHHHHHHh--CCCCCCcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEecchhhhh----------h----
Confidence 45789999999999 59999999999999999999999999886 5778999998 33211 0
Q ss_pred EeCCCCHHHHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEccc
Q 024705 177 IAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQV 256 (264)
Q Consensus 177 ~~~~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~ 256 (264)
.. ...++.+..+...+...+ ++|||++..+.....-.. ..+.+.+.+.+.+.+|...+++.|+++|++++.
T Consensus 165 -~~-~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~~s-----~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp 235 (331)
T 2vhj_A 165 -YN-TDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGGNT-----TSGGISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (331)
T ss_dssp -CB-CCHHHHHHHHHHHHHHCS--EEEEECCTTTC----------------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred -hh-cCHHHHHHHHHHHHhhCC--EEEEeccccccccccccc-----ccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence 01 456777666655555444 999999999874221111 112233456677888888889999999998774
No 34
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.28 E-value=8e-12 Score=111.77 Aligned_cols=133 Identities=15% Similarity=0.188 Sum_probs=81.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC-CH-H---HHHHcCCCccceeEeCCCCHHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-DP-S---LAEAMGIDAENLLIAQPDSAENLLSVV 190 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~-~~-~---~~~~~g~~~~~l~~~~~~~~ee~~~~i 190 (264)
-+++|+++.|.||||||||||+..++....+..|.+.+...+... .. . ..+.+|+.+|+..+....++.+.+...
T Consensus 50 ~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~ 129 (366)
T 3tui_C 50 HVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP 129 (366)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHH
T ss_pred EEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHH
Confidence 478999999999999999998887776554445555443333221 11 1 235688888877666655655443221
Q ss_pred H---------------HHh-----------------------------hcCCccEEEEcCccccccccccCCCcCCCCcH
Q 024705 191 D---------------TLT-----------------------------KSGSIDVIVVDSVAALIPKCEIGVPINGMYSD 226 (264)
Q Consensus 191 ~---------------~~~-----------------------------~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~ 226 (264)
. .++ -..+|+++++|..++-+ +.
T Consensus 130 ~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~L-------------D~ 196 (366)
T 3tui_C 130 LELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSAL-------------DP 196 (366)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTS-------------CH
T ss_pred HHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccC-------------CH
Confidence 1 110 01345566666544433 22
Q ss_pred HHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhcC
Q 024705 227 AQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKHF 264 (264)
Q Consensus 227 ~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~~ 264 (264)
..++.+.+.|+++. ++.|+|||+++|..+.+...|
T Consensus 197 ~~~~~i~~lL~~l~---~~~g~Tii~vTHdl~~~~~~a 231 (366)
T 3tui_C 197 ATTRSILELLKDIN---RRLGLTILLITHEMDVVKRIC 231 (366)
T ss_dssp HHHHHHHHHHHHHH---HHSCCEEEEEESCHHHHHHHC
T ss_pred HHHHHHHHHHHHHH---HhCCCEEEEEecCHHHHHHhC
Confidence 33444555666665 677999999999998876544
No 35
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.27 E-value=7e-12 Score=112.77 Aligned_cols=129 Identities=16% Similarity=0.211 Sum_probs=78.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC-CCHHHHHHcCCCccceeEeCCCCHHHHHHHH----
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA-LDPSLAEAMGIDAENLLIAQPDSAENLLSVV---- 190 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~-~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i---- 190 (264)
-+++|+++.|.||||||||||+..++....+..+.+ +++.... ......+.+|+.+|+..+++..++.+.+...
T Consensus 25 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I-~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~ 103 (381)
T 3rlf_A 25 DIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL-FIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA 103 (381)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE-EETTEECTTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT
T ss_pred EECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEE-EECCEECCCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc
Confidence 378999999999999999998888877655444444 4443322 1112234577777776665555554433221
Q ss_pred ------------------------------------------HHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHH
Q 024705 191 ------------------------------------------DTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQ 228 (264)
Q Consensus 191 ------------------------------------------~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q 228 (264)
+.++ .+|+++++|...+-+ +...
T Consensus 104 ~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~--~~P~lLLLDEPts~L-------------D~~~ 168 (381)
T 3rlf_A 104 GAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLV--AEPSVFLLDEPLSNL-------------DAAL 168 (381)
T ss_dssp TCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHH--HCCSEEEEESTTTTS-------------CHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHH--cCCCEEEEECCCcCC-------------CHHH
Confidence 1111 234555555444333 2233
Q ss_pred HHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 229 SRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 229 ~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
+..+...|+++. ++.|+|+|+++|..+.+...
T Consensus 169 ~~~l~~~l~~l~---~~~g~tii~vTHd~~ea~~~ 200 (381)
T 3rlf_A 169 RVQMRIEISRLH---KRLGRTMIYVTHDQVEAMTL 200 (381)
T ss_dssp HHHHHHHHHHHH---HHHCCEEEEECSCHHHHHHH
T ss_pred HHHHHHHHHHHH---HhCCCEEEEEECCHHHHHHh
Confidence 334455556554 67799999999998877654
No 36
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.27 E-value=1.4e-11 Score=106.00 Aligned_cols=132 Identities=17% Similarity=0.169 Sum_probs=80.4
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC-C-HHHHHHcCCCccceeEeCCCCHHHH--------
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-D-PSLAEAMGIDAENLLIAQPDSAENL-------- 186 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~-~-~~~~~~~g~~~~~l~~~~~~~~ee~-------- 186 (264)
+++|+++.|.||||||||||+..++....+..|.+.+...+... . ..+.+.+|+.+++..+....++.+.
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~ 113 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY 113 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc
Confidence 78999999999999999999888887665555655543332221 1 1344556655554322222222211
Q ss_pred ------------------------------------HHHHHHHhh----cCCccEEEEcCccccccccccCCCcCCCCcH
Q 024705 187 ------------------------------------LSVVDTLTK----SGSIDVIVVDSVAALIPKCEIGVPINGMYSD 226 (264)
Q Consensus 187 ------------------------------------~~~i~~~~~----~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~ 226 (264)
+.+.+.++. ..+|+++++|..++-. +.
T Consensus 114 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~L-------------D~ 180 (266)
T 4g1u_C 114 GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSAL-------------DL 180 (266)
T ss_dssp CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSC-------------CH
T ss_pred CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccC-------------CH
Confidence 112222221 0178888888766554 22
Q ss_pred HHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhcC
Q 024705 227 AQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKHF 264 (264)
Q Consensus 227 ~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~~ 264 (264)
..++.+.+.++++. ++.++|||+++|..+.+...|
T Consensus 181 ~~~~~i~~~l~~l~---~~~~~tvi~vtHdl~~~~~~~ 215 (266)
T 4g1u_C 181 YHQQHTLRLLRQLT---RQEPLAVCCVLHDLNLAALYA 215 (266)
T ss_dssp HHHHHHHHHHHHHH---HHSSEEEEEECSCHHHHHHHC
T ss_pred HHHHHHHHHHHHHH---HcCCCEEEEEEcCHHHHHHhC
Confidence 44455666666665 566789999999998876543
No 37
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.25 E-value=8.1e-12 Score=111.59 Aligned_cols=129 Identities=16% Similarity=0.152 Sum_probs=76.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCC-----CCCHHHHHHcCCCccceeEeCCCCHHHHHHH-
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN-----ALDPSLAEAMGIDAENLLIAQPDSAENLLSV- 189 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~-----~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~- 189 (264)
-+++|+++.|.||||||||||+..++....+..+.+ +++... .......+.+|+.+|+..++...++.+.+..
T Consensus 26 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I-~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~ 104 (359)
T 3fvq_A 26 SLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI-SLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYG 104 (359)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEE-EETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTT
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEE-EECCEECcccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHH
Confidence 478999999999999999998888877655544544 443221 1111233457777776555444444333211
Q ss_pred ---------------------------------------------HHHHhhcCCccEEEEcCccccccccccCCCcCCCC
Q 024705 190 ---------------------------------------------VDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMY 224 (264)
Q Consensus 190 ---------------------------------------------i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~ 224 (264)
.+.+ -.+|+++++|...+-..
T Consensus 105 l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL--~~~P~lLLLDEPts~LD------------ 170 (359)
T 3fvq_A 105 LGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARAL--APDPELILLDEPFSALD------------ 170 (359)
T ss_dssp STTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHH--TTCCSEEEEESTTTTSC------------
T ss_pred HHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHH--HcCCCEEEEeCCcccCC------------
Confidence 1111 13566666665544331
Q ss_pred cHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 225 SDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 225 ~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
...+..+...+.++. ++.|+|+|+++|..+.+...
T Consensus 171 -~~~r~~l~~~l~~~~---~~~g~tvi~vTHd~~ea~~~ 205 (359)
T 3fvq_A 171 -EQLRRQIREDMIAAL---RANGKSAVFVSHDREEALQY 205 (359)
T ss_dssp -HHHHHHHHHHHHHHH---HHTTCEEEEECCCHHHHHHH
T ss_pred -HHHHHHHHHHHHHHH---HhCCCEEEEEeCCHHHHHHH
Confidence 122333333444444 77899999999998877654
No 38
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.21 E-value=3.1e-11 Score=103.26 Aligned_cols=72 Identities=15% Similarity=0.171 Sum_probs=45.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH-HHHHHcCCCccceeEeCCCCHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP-SLAEAMGIDAENLLIAQPDSAENLL 187 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~-~~~~~~g~~~~~l~~~~~~~~ee~~ 187 (264)
-+++|+++.|.||||||||||+..++....+..+.+.+...+..... .+.+.+|+.+++..+....++.+.+
T Consensus 37 ~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl 109 (256)
T 1vpl_A 37 EIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYL 109 (256)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHH
T ss_pred EEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCcHHHHH
Confidence 37899999999999999999988887655444455544322222122 3345577777765544444544433
No 39
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.21 E-value=3.8e-11 Score=101.39 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=46.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC-CH-H----HHHHcCCCccceeEeCCCCHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-DP-S----LAEAMGIDAENLLIAQPDSAENLL 187 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~-~~-~----~~~~~g~~~~~l~~~~~~~~ee~~ 187 (264)
-+++|+++.|.||||||||||+..++....+..|.+.+...+... .. . +.+.+|+.+|+..++...++.+.+
T Consensus 27 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl 104 (235)
T 3tif_A 27 NIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENV 104 (235)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHH
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHH
Confidence 378999999999999999998888776555544544443322211 11 1 234588888776655554554443
No 40
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.20 E-value=1.9e-11 Score=109.12 Aligned_cols=71 Identities=18% Similarity=0.244 Sum_probs=45.5
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCC-CCCHHHHHHcCCCccceeEeCCCCHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN-ALDPSLAEAMGIDAENLLIAQPDSAENLL 187 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~-~~~~~~~~~~g~~~~~l~~~~~~~~ee~~ 187 (264)
-+++|+++.|.||||||||||+..++....+..+.+ +++... .......+.+|+.+|+..++...++.+.+
T Consensus 37 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I-~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni 108 (355)
T 1z47_A 37 QIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV-WIGGKRVTDLPPQKRNVGLVFQNYALFQHMTVYDNV 108 (355)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE-EETTEECTTCCGGGSSEEEECGGGCCCTTSCHHHHH
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEE-EECCEECCcCChhhCcEEEEecCcccCCCCCHHHHH
Confidence 377999999999999999998888776554444444 443322 11112234577777766555555555444
No 41
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.20 E-value=2.5e-11 Score=108.59 Aligned_cols=70 Identities=20% Similarity=0.189 Sum_probs=43.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC-CCHHHHHHcCCCccceeEeCCCCHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA-LDPSLAEAMGIDAENLLIAQPDSAENL 186 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~-~~~~~~~~~g~~~~~l~~~~~~~~ee~ 186 (264)
-+++|+++.|.||||||||||+..++....+..+.+ +++.... ......+.+|+.+|+..++...++.+.
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I-~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~en 95 (359)
T 2yyz_A 25 EVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEI-YFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFEN 95 (359)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE-EETTEECTTSCGGGTTEEEECSSCCCCTTSCHHHH
T ss_pred EEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEE-EECCEECCCCChhhCcEEEEecCcccCCCCCHHHH
Confidence 378999999999999999998888776554444444 4433221 111123457777666555444444443
No 42
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.20 E-value=2.6e-11 Score=104.80 Aligned_cols=131 Identities=18% Similarity=0.168 Sum_probs=76.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC-CCH----HHHHHcCCCccce--eEeCCCCHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA-LDP----SLAEAMGIDAENL--LIAQPDSAENLLS 188 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~-~~~----~~~~~~g~~~~~l--~~~~~~~~ee~~~ 188 (264)
-+++|+++.|.||||||||||+..++....+..|.+ +++.... ... .+.+.+|+.+|+. .+. ..++.+.+.
T Consensus 30 ~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I-~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~-~~tv~e~l~ 107 (275)
T 3gfo_A 30 NIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI-LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLF-SASVYQDVS 107 (275)
T ss_dssp EEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEE-EETTEECCCSHHHHHHHHHSEEEECSSGGGTCC-SSBHHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEE-EECCEECCcccccHHHHhCcEEEEEcCcccccc-cCcHHHHHH
Confidence 378999999999999999998888877554444544 4443322 121 2345678777653 122 223322221
Q ss_pred H---------------HHHHh-----------------------------hcCCccEEEEcCccccccccccCCCcCCCC
Q 024705 189 V---------------VDTLT-----------------------------KSGSIDVIVVDSVAALIPKCEIGVPINGMY 224 (264)
Q Consensus 189 ~---------------i~~~~-----------------------------~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~ 224 (264)
. +..++ -..+|+++++|..++-.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~L------------- 174 (275)
T 3gfo_A 108 FGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL------------- 174 (275)
T ss_dssp HHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTC-------------
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccC-------------
Confidence 1 11110 01456677777655443
Q ss_pred cHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhcC
Q 024705 225 SDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKHF 264 (264)
Q Consensus 225 ~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~~ 264 (264)
+...++.+.+.++++. ++.|+|||+++|..+.+...|
T Consensus 175 D~~~~~~i~~~l~~l~---~~~g~tvi~vtHdl~~~~~~~ 211 (275)
T 3gfo_A 175 DPMGVSEIMKLLVEMQ---KELGITIIIATHDIDIVPLYC 211 (275)
T ss_dssp CHHHHHHHHHHHHHHH---HHHCCEEEEEESCCSSGGGGC
T ss_pred CHHHHHHHHHHHHHHH---hhCCCEEEEEecCHHHHHHhC
Confidence 2233444555566553 355999999999988776543
No 43
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.20 E-value=2.8e-11 Score=108.39 Aligned_cols=71 Identities=18% Similarity=0.280 Sum_probs=46.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCC-CCCHHHHHHcCCCccceeEeCCCCHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN-ALDPSLAEAMGIDAENLLIAQPDSAENLL 187 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~-~~~~~~~~~~g~~~~~l~~~~~~~~ee~~ 187 (264)
-+++|+++.|.||||||||||+..++....+..+.+ +++... .......+.+|+.+|+..++...++.+.+
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I-~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni 96 (362)
T 2it1_A 25 KIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI-YFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNI 96 (362)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE-EETTEECTTSCGGGTTEEEECTTCCCCTTSCHHHHH
T ss_pred EECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEE-EECCEECCcCCHhHCcEEEEecCcccCCCCCHHHHH
Confidence 378999999999999999998888877654444544 443322 11112234577777776655555655544
No 44
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.20 E-value=4.3e-11 Score=102.74 Aligned_cols=72 Identities=15% Similarity=0.142 Sum_probs=46.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC---CC-HHHHHHcCCCccceeEeCCCCHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA---LD-PSLAEAMGIDAENLLIAQPDSAENLL 187 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~---~~-~~~~~~~g~~~~~l~~~~~~~~ee~~ 187 (264)
-+++|+++.|.||||||||||+..++....+..+.+.+...+.. .. ..+.+.+|+.+++..++...++.+.+
T Consensus 46 ~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l 121 (263)
T 2olj_A 46 HIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNI 121 (263)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHH
T ss_pred EEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHHHH
Confidence 37899999999999999999888877655444455544322221 11 13355688887776555554555444
No 45
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.19 E-value=7.6e-12 Score=111.49 Aligned_cols=73 Identities=15% Similarity=0.091 Sum_probs=51.0
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCC-CCCHHHHHHcCCCccceeEeCCCCHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN-ALDPSLAEAMGIDAENLLIAQPDSAENLLSV 189 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~-~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~ 189 (264)
-+++|+++.|.||||||||||+..++....+..+.+ +++... .......+.+|+.+|+..++...++.+.+..
T Consensus 22 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I-~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~ 95 (348)
T 3d31_A 22 KVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI-LLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEF 95 (348)
T ss_dssp EECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEE-EETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHH
T ss_pred EEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEE-EECCEECCCCchhhCcEEEEecCcccCCCCCHHHHHHH
Confidence 378999999999999999998888876554444554 444322 2122345668888888777776677766544
No 46
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.19 E-value=5.1e-11 Score=99.89 Aligned_cols=72 Identities=19% Similarity=0.143 Sum_probs=46.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC-CH-H----HHHHcCCCccceeEeCCCCHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-DP-S----LAEAMGIDAENLLIAQPDSAENLL 187 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~-~~-~----~~~~~g~~~~~l~~~~~~~~ee~~ 187 (264)
-+++|+++.|.||||||||||+..++....+..+.+.+...+... .. . +.+.+|+.+++..++...++.+.+
T Consensus 26 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l 103 (224)
T 2pcj_A 26 SVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENV 103 (224)
T ss_dssp EEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHH
Confidence 377999999999999999998888776554444544443222211 11 1 235688888876555555555444
No 47
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.19 E-value=3.3e-11 Score=108.28 Aligned_cols=131 Identities=13% Similarity=0.170 Sum_probs=73.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC-CCHHHHHHcCCCccceeEeCCCCHHHHHH------
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA-LDPSLAEAMGIDAENLLIAQPDSAENLLS------ 188 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~-~~~~~~~~~g~~~~~l~~~~~~~~ee~~~------ 188 (264)
-+++|+++.|.||||||||||+..++....+..+.+ +++.... ......+.+|+.+|+..++...++.+.+.
T Consensus 33 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I-~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~ 111 (372)
T 1v43_A 33 TIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI-YFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK 111 (372)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE-EETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC--
T ss_pred EECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEE-EECCEECCCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc
Confidence 378999999999999999998888776554444444 4443221 11112345677666654444333333221
Q ss_pred ---------HHHHHhh-----------------------------cCCccEEEEcCccccccccccCCCcCCCCcHHHHH
Q 024705 189 ---------VVDTLTK-----------------------------SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSR 230 (264)
Q Consensus 189 ---------~i~~~~~-----------------------------~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r 230 (264)
.+..+++ -.+|+++++|...+-+ +....+
T Consensus 112 ~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~L-------------D~~~r~ 178 (372)
T 1v43_A 112 KFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNL-------------DAKLRV 178 (372)
T ss_dssp CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTS-------------CHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccC-------------CHHHHH
Confidence 1111110 1345666666554433 224444
Q ss_pred HHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 231 IMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 231 ~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
.+...|+++. ++.|+|+|+++|..+.+...
T Consensus 179 ~l~~~l~~l~---~~~g~tvi~vTHd~~~a~~~ 208 (372)
T 1v43_A 179 AMRAEIKKLQ---QKLKVTTIYVTHDQVEAMTM 208 (372)
T ss_dssp HHHHHHHHHH---HHHTCEEEEEESCHHHHHHH
T ss_pred HHHHHHHHHH---HhCCCEEEEEeCCHHHHHHh
Confidence 4556666665 66799999999998876543
No 48
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=99.16 E-value=1.8e-10 Score=96.41 Aligned_cols=117 Identities=15% Similarity=0.119 Sum_probs=82.5
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC--HHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhh
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD--PSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~--~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~ 195 (264)
.+|.+++++|++|+||||++++++..+..+|.+|+++....... ...+.++|+....+.+ ...+++.+.+.....
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~---~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEV---ESAPEILNYIMSNSF 86 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEE---SSTHHHHHHHHSTTS
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCcccccc---CCHHHHHHHHHHHhh
Confidence 57899999999999999999999999999999999996554321 1234456666555443 234666666665555
Q ss_pred cCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchH
Q 024705 196 SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVL 259 (264)
Q Consensus 196 ~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~ 259 (264)
..++++|+||+++.+.. .+ ...+..++ +.|++||++.|..+.
T Consensus 87 ~~~~dvViIDEaQ~l~~--------------~~----ve~l~~L~----~~gi~Vil~Gl~~df 128 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDD--------------RI----CEVANILA----ENGFVVIISGLDKNF 128 (223)
T ss_dssp CTTCCEEEECSGGGSCT--------------HH----HHHHHHHH----HTTCEEEEECCSBCT
T ss_pred CCCCCEEEEecCccCcH--------------HH----HHHHHHHH----hCCCeEEEEeccccc
Confidence 56799999999997542 12 23445543 349999999996653
No 49
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.16 E-value=3.8e-11 Score=101.72 Aligned_cols=70 Identities=10% Similarity=0.072 Sum_probs=43.5
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENL 186 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~ 186 (264)
-+++ +++.|.||||||||||+..++....+..|.+.+...+........+.+|+.+++..++...++.+.
T Consensus 21 ~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en 90 (240)
T 2onk_A 21 EMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRN 90 (240)
T ss_dssp EECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHH
T ss_pred EECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHH
Confidence 3678 999999999999999988887765444455544222211111123457777776555544454443
No 50
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.14 E-value=3.4e-11 Score=108.24 Aligned_cols=71 Identities=13% Similarity=0.142 Sum_probs=45.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC-C------CHHHHHHcCCCccceeEeCCCCHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA-L------DPSLAEAMGIDAENLLIAQPDSAENLL 187 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~-~------~~~~~~~~g~~~~~l~~~~~~~~ee~~ 187 (264)
-+++|+++.|.||||||||||+..++....+..+.+ +++.... . .....+.+|+.+|+..++...++.+.+
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I-~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni 102 (372)
T 1g29_1 25 EVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI-YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNI 102 (372)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE-EETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHH
T ss_pred EEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEE-EECCEECccccccccCCHhHCCEEEEeCCCccCCCCCHHHHH
Confidence 377999999999999999998888776554444444 4432211 0 111234577777776655555655544
No 51
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.11 E-value=2.4e-11 Score=108.50 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=28.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~ 152 (264)
-+++|+++.|.||||||||||+..++....+..+.+.
T Consensus 27 ~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~ 63 (353)
T 1oxx_K 27 NIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63 (353)
T ss_dssp EECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEE
T ss_pred EECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Confidence 3789999999999999999988887765544444443
No 52
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.10 E-value=2.4e-10 Score=97.98 Aligned_cols=73 Identities=14% Similarity=0.079 Sum_probs=47.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC-----------CCH----HHHHHcCCCccceeEeCC
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA-----------LDP----SLAEAMGIDAENLLIAQP 180 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~-----------~~~----~~~~~~g~~~~~l~~~~~ 180 (264)
-+++|+++.|.||||||||||+..++....+..|.+.|...+.. ... .+.+.+|+.+++..++..
T Consensus 28 ~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ 107 (262)
T 1b0u_A 28 QARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSH 107 (262)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTT
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecCcccCCC
Confidence 37899999999999999999888887655444455544332221 111 234568888777655555
Q ss_pred CCHHHHHH
Q 024705 181 DSAENLLS 188 (264)
Q Consensus 181 ~~~ee~~~ 188 (264)
.++.+.+.
T Consensus 108 ltv~e~l~ 115 (262)
T 1b0u_A 108 MTVLENVM 115 (262)
T ss_dssp SCHHHHHH
T ss_pred CcHHHHHH
Confidence 55554443
No 53
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.09 E-value=1.4e-10 Score=98.81 Aligned_cols=128 Identities=16% Similarity=0.160 Sum_probs=76.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC-CC-HHHHHHcCCCccceeEeCCCCHHHHH------
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA-LD-PSLAEAMGIDAENLLIAQPDSAENLL------ 187 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~-~~-~~~~~~~g~~~~~l~~~~~~~~ee~~------ 187 (264)
-+++|+++.|.||||||||||+..++....+. +.+.+...+.. .. ..+.+.+|+.+++..++...++.+.+
T Consensus 22 ~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~ 100 (249)
T 2qi9_C 22 EVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHD 100 (249)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhhcc
Confidence 37899999999999999999988887766555 54443221111 11 23445577666654333222222211
Q ss_pred --------HH---------------------------HHHHhhcCCcc-------EEEEcCccccccccccCCCcCCCCc
Q 024705 188 --------SV---------------------------VDTLTKSGSID-------VIVVDSVAALIPKCEIGVPINGMYS 225 (264)
Q Consensus 188 --------~~---------------------------i~~~~~~~~~~-------~vvIDsl~~~~~~~~~~~~~~~~~~ 225 (264)
+. ++.++ .+++ ++++|..++-. +
T Consensus 101 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~--~~p~~~~~~~~lllLDEPts~L-------------D 165 (249)
T 2qi9_C 101 KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVL--QITPQANPAGQLLLLDEPMNSL-------------D 165 (249)
T ss_dssp TTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHH--HHCTTTCTTCCEEEESSTTTTC-------------C
T ss_pred CCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHH--cCCCcCCCCCeEEEEECCcccC-------------C
Confidence 11 11111 2456 88888766554 2
Q ss_pred HHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 226 DAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 226 ~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
....+.+.+.|+++. ++ |.|||+++|..+.+...
T Consensus 166 ~~~~~~l~~~l~~l~---~~-g~tviivtHd~~~~~~~ 199 (249)
T 2qi9_C 166 VAQQSALDKILSALS---QQ-GLAIVMSSHDLNHTLRH 199 (249)
T ss_dssp HHHHHHHHHHHHHHH---HT-TCEEEEECSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---hC-CCEEEEEeCCHHHHHHh
Confidence 244455566666664 44 99999999998876543
No 54
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.09 E-value=1.7e-10 Score=98.64 Aligned_cols=60 Identities=18% Similarity=0.173 Sum_probs=38.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC-CH--HHHHHcCCCccce
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-DP--SLAEAMGIDAENL 175 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~-~~--~~~~~~g~~~~~l 175 (264)
-+++|+++.|.||||||||||+..++....+..|.+.+...+... .. ...+.+|+.+|+.
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~ 91 (257)
T 1g6h_A 29 SVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTP 91 (257)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCC
T ss_pred EEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCC
Confidence 478999999999999999998888877654444554443222211 11 1234577766643
No 55
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.06 E-value=2.2e-11 Score=103.19 Aligned_cols=72 Identities=18% Similarity=0.206 Sum_probs=44.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC-CH-HH-HHHcCCCccceeEeCCCCHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-DP-SL-AEAMGIDAENLLIAQPDSAENLL 187 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~-~~-~~-~~~~g~~~~~l~~~~~~~~ee~~ 187 (264)
-+++|+++.|.||||||||||+..++....+..+.+.+...+... .. .+ .+.+|+.+++..++...++.+.+
T Consensus 28 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl 102 (240)
T 1ji0_A 28 KVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENL 102 (240)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHHH
Confidence 377999999999999999998888876554444555443222211 12 22 23478777765544444444443
No 56
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.05 E-value=2.2e-11 Score=101.39 Aligned_cols=71 Identities=21% Similarity=0.251 Sum_probs=46.0
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSV 189 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~ 189 (264)
-+++|+++.|.||||||||||+..++....+..+.+. ++..... .+.+.+|+.+++..++...++.+.+..
T Consensus 31 ~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~-~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~enl~~ 101 (214)
T 1sgw_A 31 TIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII-YNGVPIT--KVKGKIFFLPEEIIVPRKISVEDYLKA 101 (214)
T ss_dssp EEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEE-ETTEEGG--GGGGGEEEECSSCCCCTTSBHHHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEE-ECCEEhh--hhcCcEEEEeCCCcCCCCCCHHHHHHH
Confidence 3779999999999999999988887765544444444 4322111 234457777776655555566655543
No 57
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.04 E-value=2.6e-10 Score=97.35 Aligned_cols=130 Identities=17% Similarity=0.245 Sum_probs=73.0
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCe------EEEEecCCCCCH--HHHHH--cCCC---------ccc--
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGY------CAYLDVENALDP--SLAEA--MGID---------AEN-- 174 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~------v~~~~~e~~~~~--~~~~~--~g~~---------~~~-- 174 (264)
-+++|+++.|.||||||||||+..++....+..+. +.|+..+..... ...+. ++.. ...
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~ 106 (253)
T 2nq2_C 27 DLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDY 106 (253)
T ss_dssp EEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHH
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHH
Confidence 37799999999999999999988887765444333 445544332211 01111 1100 000
Q ss_pred ---------eeE-------eCCCCHH--HHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHH
Q 024705 175 ---------LLI-------AQPDSAE--NLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQAL 236 (264)
Q Consensus 175 ---------l~~-------~~~~~~e--e~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L 236 (264)
+.+ ....+.. +.+.+++.++ .+|+++++|..++-.. ...++.+.+.+
T Consensus 107 ~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~--~~p~lllLDEPts~LD-------------~~~~~~l~~~l 171 (253)
T 2nq2_C 107 QVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIA--SECKLILLDEPTSALD-------------LANQDIVLSLL 171 (253)
T ss_dssp HHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHH--TTCSEEEESSSSTTSC-------------HHHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHH--cCCCEEEEeCCcccCC-------------HHHHHHHHHHH
Confidence 000 0011111 2222333333 5788999997766542 24444455666
Q ss_pred HHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 237 RKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 237 ~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
+++. ++.|.|||+++|..+.+...
T Consensus 172 ~~l~---~~~g~tvi~vtHd~~~~~~~ 195 (253)
T 2nq2_C 172 IDLA---QSQNMTVVFTTHQPNQVVAI 195 (253)
T ss_dssp HHHH---HTSCCEEEEEESCHHHHHHH
T ss_pred HHHH---HhcCCEEEEEecCHHHHHHh
Confidence 6664 55599999999998877543
No 58
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.00 E-value=9.7e-10 Score=93.42 Aligned_cols=61 Identities=26% Similarity=0.415 Sum_probs=40.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCC-CC-C-HHHHHHcCCCccceeE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN-AL-D-PSLAEAMGIDAENLLI 177 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~-~~-~-~~~~~~~g~~~~~l~~ 177 (264)
-+++|+++.|.||||||||||+..++....+..+.+ +++... .. . ..+.+.+|+.+++..+
T Consensus 31 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I-~i~g~~~~~~~~~~~~~~i~~v~Q~~~l 94 (247)
T 2ff7_A 31 SIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV-LIDGHDLALADPNWLRRQVGVVLQDNVL 94 (247)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE-EETTEETTTSCHHHHHHHEEEECSSCCC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE-EECCEEhhhCCHHHHHhcEEEEeCCCcc
Confidence 378999999999999999998888777654444554 444322 11 1 2345567877765443
No 59
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.00 E-value=4.5e-10 Score=96.77 Aligned_cols=62 Identities=27% Similarity=0.319 Sum_probs=41.5
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC--CC-HHHHHHcCCCccceeEe
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA--LD-PSLAEAMGIDAENLLIA 178 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~--~~-~~~~~~~g~~~~~l~~~ 178 (264)
-+++|+++.|.||||||||||+..++....+..+.+. ++.... .. ..+.+.+|+.+++..++
T Consensus 41 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~-~~g~~i~~~~~~~~~~~i~~v~Q~~~l~ 105 (271)
T 2ixe_A 41 TLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVL-LDGEPLVQYDHHYLHTQVAAVGQEPLLF 105 (271)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE-ETTEEGGGBCHHHHHHHEEEECSSCCCC
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEE-ECCEEcccCCHHHHhccEEEEecCCccc
Confidence 3789999999999999999988888776554445554 433211 11 23455678777765444
No 60
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.98 E-value=2.9e-10 Score=98.38 Aligned_cols=38 Identities=26% Similarity=0.290 Sum_probs=29.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||||||||+..++....+..+.+.|
T Consensus 43 ~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~ 80 (279)
T 2ihy_A 43 QIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNL 80 (279)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEE
Confidence 37899999999999999999888877655444454444
No 61
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.96 E-value=9.9e-11 Score=100.64 Aligned_cols=58 Identities=22% Similarity=0.248 Sum_probs=38.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccc
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAEN 174 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~ 174 (264)
-+++|+++.|.||||||||||+..++....+..|.+ +++........+.+.+|+.+++
T Consensus 29 ~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I-~~~g~~~~~~~~~~~i~~v~q~ 86 (266)
T 2yz2_A 29 VINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDV-LYDGERKKGYEIRRNIGIAFQY 86 (266)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE-EETTEECCHHHHGGGEEEECSS
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE-EECCEECchHHhhhhEEEEecc
Confidence 378999999999999999998888776554444444 4433221111233456776665
No 62
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.94 E-value=7.6e-10 Score=94.21 Aligned_cols=73 Identities=22% Similarity=0.270 Sum_probs=46.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHH--HhhcCCeEEEEecCCC-C-CH-HH-HHHcCCCccceeEeCCCCHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKE--AQKLGGYCAYLDVENA-L-DP-SL-AEAMGIDAENLLIAQPDSAENLLSV 189 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~--~~~~g~~v~~~~~e~~-~-~~-~~-~~~~g~~~~~l~~~~~~~~ee~~~~ 189 (264)
-+++|+++.|.||||||||||+..++.. ..+..+.+ +++.... . .. .+ ...+++.+++..++...++.+.+..
T Consensus 25 ~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I-~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 103 (250)
T 2d2e_A 25 VVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEI-LLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRL 103 (250)
T ss_dssp EEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEE-EETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEE-EECCEECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHH
Confidence 3779999999999999999998888775 23334444 4443221 1 12 22 2236788887766666677666544
No 63
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.94 E-value=5.3e-09 Score=81.96 Aligned_cols=89 Identities=18% Similarity=0.293 Sum_probs=62.1
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhcCC
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGS 198 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~~ 198 (264)
+|+.++|+||+|+|||||+..++..+...|.+++|++....... ... .+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-----------------------------~~~--~~ 83 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-----------------------------DAA--FE 83 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-----------------------------GGG--GG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-----------------------------HHH--hC
Confidence 89999999999999999999999988777777888876542211 011 36
Q ss_pred ccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcE-EEEEccc
Q 024705 199 IDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTL-IIFLNQV 256 (264)
Q Consensus 199 ~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~t-Vi~i~h~ 256 (264)
+++++||.+..+.. ..+..+...+..+ .+.|.+ +|+++|.
T Consensus 84 ~~lLilDE~~~~~~--------------~~~~~l~~li~~~----~~~g~~~iiits~~ 124 (149)
T 2kjq_A 84 AEYLAVDQVEKLGN--------------EEQALLFSIFNRF----RNSGKGFLLLGSEY 124 (149)
T ss_dssp CSEEEEESTTCCCS--------------HHHHHHHHHHHHH----HHHTCCEEEEEESS
T ss_pred CCEEEEeCccccCh--------------HHHHHHHHHHHHH----HHcCCcEEEEECCC
Confidence 89999999886442 1223333444433 556776 7778774
No 64
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.91 E-value=1.3e-09 Score=95.38 Aligned_cols=62 Identities=16% Similarity=0.282 Sum_probs=41.5
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC--C-HHHHHHcCCCccceeEe
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL--D-PSLAEAMGIDAENLLIA 178 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~--~-~~~~~~~g~~~~~l~~~ 178 (264)
-+++|+++.|.||||||||||+..++....+..|.+ +++..... . ..+.+.+|+.+|+..++
T Consensus 76 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I-~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf 140 (306)
T 3nh6_A 76 TVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCI-RIDGQDISQVTQASLRSHIGVVPQDTVLF 140 (306)
T ss_dssp EECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEE-EETTEETTSBCHHHHHHTEEEECSSCCCC
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEE-EECCEEcccCCHHHHhcceEEEecCCccC
Confidence 378999999999999999998887776555444544 44432211 1 13456678777765443
No 65
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.91 E-value=1.3e-08 Score=81.64 Aligned_cols=109 Identities=20% Similarity=0.196 Sum_probs=64.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHh-hcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ-KLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~-~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~ 194 (264)
.+++|..++|+||||+|||||+..++..+. ..|..++|++..+..... ...+. .. .. .+.... +
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~--~~------~~--~~~~~~---~- 98 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRL-KHLMD--EG------KD--TKFLKT---V- 98 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHH-HHHHH--HT------CC--SHHHHH---H-
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH-HHHhc--Cc------hH--HHHHHH---h-
Confidence 356689999999999999999999999887 456677787643321110 00000 00 00 112221 1
Q ss_pred hcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccc
Q 024705 195 KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVK 257 (264)
Q Consensus 195 ~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~ 257 (264)
.+++++++|.+..... +..... .+..+.....+.|+++|+++|..
T Consensus 99 --~~~~llilDE~~~~~~------------~~~~~~----~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 99 --LNSPVLVLDDLGSERL------------SDWQRE----LISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp --HTCSEEEEETCSSSCC------------CHHHHH----HHHHHHHHHHHTTCEEEEECCCC
T ss_pred --cCCCEEEEeCCCCCcC------------CHHHHH----HHHHHHHHHHHcCCCEEEEcCCC
Confidence 2789999999874321 112222 33333333355688899888865
No 66
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.81 E-value=4.8e-09 Score=89.77 Aligned_cols=61 Identities=21% Similarity=0.336 Sum_probs=39.3
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC--CC-HHHHHHcCCCccceeEe
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA--LD-PSLAEAMGIDAENLLIA 178 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~--~~-~~~~~~~g~~~~~l~~~ 178 (264)
-+++|+++.|.||||||||||+..++.... ..+. ++++.... .. ..+.+.+|+.+++..++
T Consensus 42 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~G~-I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~ 105 (260)
T 2ghi_A 42 FIPSGTTCALVGHTGSGKSTIAKLLYRFYD-AEGD-IKIGGKNVNKYNRNSIRSIIGIVPQDTILF 105 (260)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSSC-CEEE-EEETTEEGGGBCHHHHHTTEEEECSSCCCC
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccCC-CCeE-EEECCEEhhhcCHHHHhccEEEEcCCCccc
Confidence 478999999999999999999888877553 3343 44433211 11 12344567766654433
No 67
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.79 E-value=8e-09 Score=88.72 Aligned_cols=73 Identities=21% Similarity=0.268 Sum_probs=45.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHH--hhcCCeEEEEecCCC--CCH-HH-HHHcCCCccceeEeCCCCHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEA--QKLGGYCAYLDVENA--LDP-SL-AEAMGIDAENLLIAQPDSAENLLSV 189 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~--~~~g~~v~~~~~e~~--~~~-~~-~~~~g~~~~~l~~~~~~~~ee~~~~ 189 (264)
-+++|+++.|.||||||||||+..++... .+..+.+ +++.... ... .+ ...+++.+++..++...++.+++..
T Consensus 42 ~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I-~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~ 120 (267)
T 2zu0_C 42 DVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV-EFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQT 120 (267)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEE-EETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEE-EECCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHH
Confidence 37899999999999999999988887752 2234444 4433211 111 22 2236777776655555566655543
No 68
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.78 E-value=4.5e-09 Score=89.02 Aligned_cols=38 Identities=18% Similarity=0.178 Sum_probs=31.0
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
-+++|+++.|.||||||||||+..++....+..+.+.+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 61 (243)
T 1mv5_A 24 EAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61 (243)
T ss_dssp EECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEE
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 37899999999999999999988887765555565554
No 69
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.76 E-value=2.8e-08 Score=93.42 Aligned_cols=130 Identities=18% Similarity=0.214 Sum_probs=77.0
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCe-------EEEEecCCCCC------HHHHHHc-CC-Cc---------
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGY-------CAYLDVENALD------PSLAEAM-GI-DA--------- 172 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~-------v~~~~~e~~~~------~~~~~~~-g~-~~--------- 172 (264)
+++|+++.|.||||||||||+..++....+..+. +.|+..+.... +...... .. ..
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l 370 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVT 370 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTT
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHH
Confidence 5789999999999999999998888765544333 34444332211 0111100 00 00
Q ss_pred ccee-------EeCCCCHH--HHHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHH
Q 024705 173 ENLL-------IAQPDSAE--NLLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSL 243 (264)
Q Consensus 173 ~~l~-------~~~~~~~e--e~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l 243 (264)
+.+. .....+.- +-+.+.+.+. .+|+++++|..++-.. ...+..+.+.|++++
T Consensus 371 ~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~--~~p~lLlLDEPT~gLD-------------~~~~~~i~~~l~~l~--- 432 (538)
T 3ozx_A 371 KRLNLHRLLESNVNDLSGGELQKLYIAATLA--KEADLYVLDQPSSYLD-------------VEERYIVAKAIKRVT--- 432 (538)
T ss_dssp TTTTGGGCTTSBGGGCCHHHHHHHHHHHHHH--SCCSEEEEESTTTTCC-------------HHHHHHHHHHHHHHH---
T ss_pred HHcCCHHHhcCChhhCCHHHHHHHHHHHHHH--cCCCEEEEeCCccCCC-------------HHHHHHHHHHHHHHH---
Confidence 0000 00112222 2233344443 5899999998776652 244555667777775
Q ss_pred hccCcEEEEEcccchHhhhcC
Q 024705 244 CQSHTLIIFLNQVKVLLLKHF 264 (264)
Q Consensus 244 ~~~g~tVi~i~h~~~~~~~~~ 264 (264)
++.|+|||+++|..+.+...|
T Consensus 433 ~~~g~tvi~vsHdl~~~~~~a 453 (538)
T 3ozx_A 433 RERKAVTFIIDHDLSIHDYIA 453 (538)
T ss_dssp HHTTCEEEEECSCHHHHHHHC
T ss_pred HhCCCEEEEEeCCHHHHHHhC
Confidence 678999999999998876543
No 70
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.75 E-value=5.9e-08 Score=92.39 Aligned_cols=131 Identities=18% Similarity=0.193 Sum_probs=77.5
Q ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCC------eEEEEecCCCCC------HHHHH----------------
Q 024705 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGG------YCAYLDVENALD------PSLAE---------------- 166 (264)
Q Consensus 115 gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~------~v~~~~~e~~~~------~~~~~---------------- 166 (264)
|-+.+|+++.|.||||||||||+..++....+..+ .+.|+..+.... .....
T Consensus 373 G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l 452 (608)
T 3j16_B 373 GEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVV 452 (608)
T ss_dssp EECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTH
T ss_pred CccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHH
Confidence 45777899999999999999999888876544333 355655432211 01111
Q ss_pred -HcCCCccceeEeCCCCHHHH--HHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHH
Q 024705 167 -AMGIDAENLLIAQPDSAENL--LSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSL 243 (264)
Q Consensus 167 -~~g~~~~~l~~~~~~~~ee~--~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l 243 (264)
.+|+....-......+.-+. +.+.+.+ ..+++++++|..++-.. ......+.+.++++.
T Consensus 453 ~~l~l~~~~~~~~~~LSGGqkQRv~iAraL--~~~p~lLlLDEPT~gLD-------------~~~~~~i~~ll~~l~--- 514 (608)
T 3j16_B 453 KPLRIDDIIDQEVQHLSGGELQRVAIVLAL--GIPADIYLIDEPSAYLD-------------SEQRIICSKVIRRFI--- 514 (608)
T ss_dssp HHHTSTTTSSSBSSSCCHHHHHHHHHHHHT--TSCCSEEEECCTTTTCC-------------HHHHHHHHHHHHHHH---
T ss_pred HHcCChhhhcCChhhCCHHHHHHHHHHHHH--HhCCCEEEEECCCCCCC-------------HHHHHHHHHHHHHHH---
Confidence 11111000001112233222 2333333 35899999998776552 244455666777765
Q ss_pred hccCcEEEEEcccchHhhhc
Q 024705 244 CQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 244 ~~~g~tVi~i~h~~~~~~~~ 263 (264)
++.|.|||+++|..+.+...
T Consensus 515 ~~~g~tviivtHdl~~~~~~ 534 (608)
T 3j16_B 515 LHNKKTAFIVEHDFIMATYL 534 (608)
T ss_dssp HHHTCEEEEECSCHHHHHHH
T ss_pred HhCCCEEEEEeCCHHHHHHh
Confidence 66799999999998877653
No 71
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.74 E-value=9.8e-09 Score=96.58 Aligned_cols=130 Identities=19% Similarity=0.217 Sum_probs=74.4
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCC------eEEEEecCCCCCH-----HH-H----HH-------------
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGG------YCAYLDVENALDP-----SL-A----EA------------- 167 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~------~v~~~~~e~~~~~-----~~-~----~~------------- 167 (264)
+++|+++.|.||||||||||+..++....+..+ ++.|+..+..... .. . ..
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~ 388 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKP 388 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 368999999999999999999888876544332 3556655432210 00 0 00
Q ss_pred cCCCccceeEeCCCCHHHH--HHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhc
Q 024705 168 MGIDAENLLIAQPDSAENL--LSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQ 245 (264)
Q Consensus 168 ~g~~~~~l~~~~~~~~ee~--~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~ 245 (264)
+|+....-......+.-+. +.+.+.+ ..+++++++|..++-.. ...+..+.+.|++++ ++
T Consensus 389 ~~l~~~~~~~~~~LSGGe~qrv~lAraL--~~~p~lLlLDEPt~~LD-------------~~~~~~i~~~l~~l~---~~ 450 (538)
T 1yqt_A 389 LGIIDLYDREVNELSGGELQRVAIAATL--LRDADIYLLDEPSAYLD-------------VEQRLAVSRAIRHLM---EK 450 (538)
T ss_dssp TTCGGGTTSBGGGCCHHHHHHHHHHHHH--TSCCSEEEEECTTTTCC-------------HHHHHHHHHHHHHHH---HH
T ss_pred cCChhhhcCChhhCCHHHHHHHHHHHHH--HhCCCEEEEeCCcccCC-------------HHHHHHHHHHHHHHH---Hh
Confidence 0110000000011222222 2223333 25788888887766552 134444566666664 56
Q ss_pred cCcEEEEEcccchHhhhcC
Q 024705 246 SHTLIIFLNQVKVLLLKHF 264 (264)
Q Consensus 246 ~g~tVi~i~h~~~~~~~~~ 264 (264)
.|.+||+++|....+...|
T Consensus 451 ~g~tvi~vsHd~~~~~~~~ 469 (538)
T 1yqt_A 451 NEKTALVVEHDVLMIDYVS 469 (538)
T ss_dssp HTCEEEEECSCHHHHHHHC
T ss_pred CCCEEEEEeCCHHHHHHhC
Confidence 7999999999998876543
No 72
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.73 E-value=6.6e-08 Score=87.30 Aligned_cols=123 Identities=15% Similarity=0.137 Sum_probs=74.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~ 195 (264)
|+++..-++++||||+|||+++..++..+ +...+.++...-.... .-..+..+..+-...+
T Consensus 178 gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~sk~----------------vGese~~vr~lF~~Ar 238 (405)
T 4b4t_J 178 GIAQPKGVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGAELVQKY----------------IGEGSRMVRELFVMAR 238 (405)
T ss_dssp TCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGGGGSCSS----------------TTHHHHHHHHHHHHHH
T ss_pred CCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhHHhhccc----------------cchHHHHHHHHHHHHH
Confidence 67766779999999999999999998865 5566666543221110 0112333333333334
Q ss_pred cCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHh
Q 024705 196 SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLL 260 (264)
Q Consensus 196 ~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~ 260 (264)
...|.+++||.+.++.+... .+.. ..+....+.+.+.|..+-..-...++.||.+|+--+.+
T Consensus 239 ~~aP~IIFiDEiDai~~~R~-~~~~--~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~L 300 (405)
T 4b4t_J 239 EHAPSIIFMDEIDSIGSTRV-EGSG--GGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDIL 300 (405)
T ss_dssp HTCSEEEEEESSSCCTTSCS-CSSS--GGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSS
T ss_pred HhCCceEeeecchhhccCCC-CCCC--CCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhC
Confidence 56899999999999985321 1111 11123445566777776544455677888777654444
No 73
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.72 E-value=3.7e-08 Score=93.55 Aligned_cols=62 Identities=21% Similarity=0.303 Sum_probs=42.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC-C-HHHHHHcCCCccceeE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-D-PSLAEAMGIDAENLLI 177 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~-~-~~~~~~~g~~~~~l~~ 177 (264)
-+++|+++.|.||||||||||+..++....+..|.+.+-+.+... . ..+.+.+|+.+|+..+
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l 428 (582)
T 3b5x_A 365 SIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHL 428 (582)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCcc
Confidence 378999999999999999999988887766666665543322211 1 1344557776665443
No 74
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.72 E-value=3.5e-09 Score=90.79 Aligned_cols=69 Identities=20% Similarity=0.107 Sum_probs=44.3
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcC-CCccceeEeCCCCHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMG-IDAENLLIAQPDSAENLLSV 189 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g-~~~~~l~~~~~~~~ee~~~~ 189 (264)
-++ |+++.|.||||||||||+..++... +..+.+.+...+...... .+.+| +.+++..+ ..++.+.+..
T Consensus 27 ~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~-~~~i~~~v~Q~~~l--~~tv~enl~~ 96 (263)
T 2pjz_A 27 EVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRN-YIRYSTNLPEAYEI--GVTVNDIVYL 96 (263)
T ss_dssp EEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSC-CTTEEECCGGGSCT--TSBHHHHHHH
T ss_pred EEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHH-hhheEEEeCCCCcc--CCcHHHHHHH
Confidence 378 9999999999999999998888776 555555442211110011 23577 77776554 4556555543
No 75
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.72 E-value=4.4e-09 Score=84.10 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=21.4
Q ss_pred CCCCcEEEEEecCCCChHHHHHH
Q 024705 117 LPKGRIVEIYGREASGKTTLALH 139 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~ 139 (264)
+++|+++.|.||||||||||+..
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHH
Confidence 57899999999999999999984
No 76
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.71 E-value=7.6e-08 Score=90.51 Aligned_cols=51 Identities=10% Similarity=0.065 Sum_probs=36.8
Q ss_pred CCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhcC
Q 024705 197 GSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKHF 264 (264)
Q Consensus 197 ~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~~ 264 (264)
.+|+++++|..++-+. ...++.+.+.|+++. + .|+|||+++|....+...|
T Consensus 175 ~~P~lLlLDEPTs~LD-------------~~~~~~l~~~L~~l~---~-~g~tvi~vsHd~~~~~~~~ 225 (538)
T 1yqt_A 175 RNATFYFFDEPSSYLD-------------IRQRLNAARAIRRLS---E-EGKSVLVVEHDLAVLDYLS 225 (538)
T ss_dssp SCCSEEEEESTTTTCC-------------HHHHHHHHHHHHHHH---H-TTCEEEEECSCHHHHHHHC
T ss_pred cCCCEEEEECCcccCC-------------HHHHHHHHHHHHHHH---h-cCCEEEEEeCCHHHHHHhC
Confidence 5889999998776652 244455666777664 3 5999999999988776543
No 77
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.70 E-value=8.2e-08 Score=91.45 Aligned_cols=129 Identities=18% Similarity=0.204 Sum_probs=76.4
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCC------eEEEEecCCCCCH-----HHH------------------HH
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGG------YCAYLDVENALDP-----SLA------------------EA 167 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~------~v~~~~~e~~~~~-----~~~------------------~~ 167 (264)
+++|+++.|.||||+|||||+..++....+..+ ++.|+..+..... ... +.
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~ 458 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKP 458 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHH
Confidence 468999999999999999999888875544332 3556655432210 000 01
Q ss_pred cCCCccceeEeCCCCHHH--HHHHHHHHhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhc
Q 024705 168 MGIDAENLLIAQPDSAEN--LLSVVDTLTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQ 245 (264)
Q Consensus 168 ~g~~~~~l~~~~~~~~ee--~~~~i~~~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~ 245 (264)
+|+....-......+.-+ -+.+.+.+ ..+++++++|..++-.. ...+..+.+.|++++ ++
T Consensus 459 ~~l~~~~~~~~~~LSGGe~QRv~iAraL--~~~p~lLlLDEPt~~LD-------------~~~~~~l~~~l~~l~---~~ 520 (607)
T 3bk7_A 459 LGIIDLYDRNVEDLSGGELQRVAIAATL--LRDADIYLLDEPSAYLD-------------VEQRLAVSRAIRHLM---EK 520 (607)
T ss_dssp HTCTTTTTSBGGGCCHHHHHHHHHHHHH--TSCCSEEEEECTTTTCC-------------HHHHHHHHHHHHHHH---HH
T ss_pred cCCchHhcCChhhCCHHHHHHHHHHHHH--HhCCCEEEEeCCccCCC-------------HHHHHHHHHHHHHHH---Hh
Confidence 122100000011122222 22333333 25789999998776652 244555666777765 66
Q ss_pred cCcEEEEEcccchHhhhc
Q 024705 246 SHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 246 ~g~tVi~i~h~~~~~~~~ 263 (264)
.|.|||+++|....+...
T Consensus 521 ~g~tvi~vsHd~~~~~~~ 538 (607)
T 3bk7_A 521 NEKTALVVEHDVLMIDYV 538 (607)
T ss_dssp TTCEEEEECSCHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHh
Confidence 799999999998877643
No 78
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.70 E-value=2.7e-08 Score=94.75 Aligned_cols=60 Identities=23% Similarity=0.316 Sum_probs=39.8
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC---CCHHHHHHcCCCccceeE
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA---LDPSLAEAMGIDAENLLI 177 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~---~~~~~~~~~g~~~~~l~~ 177 (264)
+++|+.+.|.||||||||||+..++....+..|.+ +++.... ....+.+.+|+.+|+..+
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i-~~~g~~i~~~~~~~~r~~i~~v~Q~~~l 440 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI-LVDGIDIRKIKRSSLRSSIGIVLQDTIL 440 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEE-EETTEEGGGSCHHHHHHHEEEECTTCCC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEE-EECCEEhhhCCHHHHHhceEEEeCCCcc
Confidence 78999999999999999998888776655544444 4433211 112345567776665443
No 79
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.69 E-value=1.3e-07 Score=86.38 Aligned_cols=125 Identities=18% Similarity=0.134 Sum_probs=75.7
Q ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHh
Q 024705 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (264)
Q Consensus 115 gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~ 194 (264)
.|+++..-++++||||+|||+++..++..+ +...++++...-.... .-..+..+..+-...
T Consensus 210 ~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s~l~sk~----------------~Gese~~ir~~F~~A 270 (437)
T 4b4t_L 210 VGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPASGIVDKY----------------IGESARIIREMFAYA 270 (437)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGTCCSS----------------SSHHHHHHHHHHHHH
T ss_pred CCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehhhhcccc----------------chHHHHHHHHHHHHH
Confidence 468888889999999999999999999865 5566666643322110 011233333333344
Q ss_pred hcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhh
Q 024705 195 KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLL 261 (264)
Q Consensus 195 ~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~ 261 (264)
....+.+++||.+.++.+...-.+ ...+....+.+..+|..+-..-...++.||.+|+.-+.++
T Consensus 271 ~~~~P~IifiDEiDai~~~R~~~~---~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LD 334 (437)
T 4b4t_L 271 KEHEPCIIFMDEVDAIGGRRFSEG---TSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLD 334 (437)
T ss_dssp HHSCSEEEEEECCCSSSCCCSSSC---CSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSC
T ss_pred HhcCCceeeeecccccccccccCC---CCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhC
Confidence 456899999999999985322111 1112234445566666664333345677777666544443
No 80
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.69 E-value=3.8e-08 Score=93.44 Aligned_cols=61 Identities=25% Similarity=0.375 Sum_probs=41.5
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC--C-HHHHHHcCCCccceeEe
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL--D-PSLAEAMGIDAENLLIA 178 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~--~-~~~~~~~g~~~~~l~~~ 178 (264)
+++|+.+.|.||||||||||+..++....+..|.+ +++..... . ..+.+.+|+.+|+..++
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i-~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~ 429 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI-LMDGHDLREYTLASLRNQVALVSQNVHLF 429 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEE-EETTEETTTBCHHHHHHTEEEECSSCCCC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeE-EECCEEccccCHHHHHhhCeEEccCCcCC
Confidence 78999999999999999998888877655444444 44432211 1 23455677777765444
No 81
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.69 E-value=1.1e-07 Score=86.69 Aligned_cols=123 Identities=17% Similarity=0.165 Sum_probs=76.4
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~ 195 (264)
|+++..-++++||||+|||+++..+|..+ +...+.++...-.... .-..+..+..+-...+
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~~l~~~~----------------~Ge~e~~ir~lF~~A~ 262 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGSEFVHKY----------------LGEGPRMVRDVFRLAR 262 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGGGTCCSS----------------CSHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecchhhccc----------------cchhHHHHHHHHHHHH
Confidence 67777779999999999999999998865 5566666643321110 0011222222222333
Q ss_pred cCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHh
Q 024705 196 SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLL 260 (264)
Q Consensus 196 ~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~ 260 (264)
...|.+++||.+..+.+...... ...+....+.++.+|..+.......|+.||++|+.-+.+
T Consensus 263 ~~aP~IifiDEiD~i~~~R~~~~---~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~L 324 (428)
T 4b4t_K 263 ENAPSIIFIDEVDSIATKRFDAQ---TGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTL 324 (428)
T ss_dssp HTCSEEEEEECTHHHHCSCSSSC---SCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSC
T ss_pred HcCCCeeechhhhhhhccccCCC---CCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhc
Confidence 46789999999999885321111 112224456677777777655556678888777655444
No 82
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.67 E-value=2.4e-07 Score=84.17 Aligned_cols=125 Identities=15% Similarity=0.102 Sum_probs=76.4
Q ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHh
Q 024705 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (264)
Q Consensus 115 gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~ 194 (264)
.|+++..-++++||||+|||+++..+|..+ +...+.++...-... ..-..+..+..+-...
T Consensus 211 ~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~s~l~sk----------------~vGesek~ir~lF~~A 271 (437)
T 4b4t_I 211 MGIKPPKGVILYGAPGTGKTLLAKAVANQT---SATFLRIVGSELIQK----------------YLGDGPRLCRQIFKVA 271 (437)
T ss_dssp HTCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEESGGGCCS----------------SSSHHHHHHHHHHHHH
T ss_pred CCCCCCCCCceECCCCchHHHHHHHHHHHh---CCCEEEEEHHHhhhc----------------cCchHHHHHHHHHHHH
Confidence 467777779999999999999999999865 455555553221111 0111233343333344
Q ss_pred hcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhh
Q 024705 195 KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLL 261 (264)
Q Consensus 195 ~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~ 261 (264)
+...+.+++||.+.++.+.....+.. .+....+.+...|..+-..-...++.||.+|+.-+.++
T Consensus 272 r~~aP~IIfiDEiDai~~~R~~~~~~---~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LD 335 (437)
T 4b4t_I 272 GENAPSIVFIDEIDAIGTKRYDSNSG---GEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLD 335 (437)
T ss_dssp HHTCSEEEEEEEESSSSCCCSCSSCS---SCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCC
T ss_pred HhcCCcEEEEehhhhhcccCCCCCCC---ccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcC
Confidence 45689999999999998532211111 11234455666666665443445778887776655554
No 83
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.67 E-value=3.8e-08 Score=86.92 Aligned_cols=54 Identities=19% Similarity=0.165 Sum_probs=43.5
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH------HHHHHcCCC
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP------SLAEAMGID 171 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~------~~~~~~g~~ 171 (264)
++|+++.|.|||||||||++..++....+.++++.+.+.+..... .+++++|+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~ 186 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVK 186 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCce
Confidence 579999999999999999999999998888999999887754322 235566643
No 84
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.67 E-value=2.9e-08 Score=93.31 Aligned_cols=34 Identities=24% Similarity=0.242 Sum_probs=27.4
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCC
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGG 149 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~ 149 (264)
-.++|+++.|.||||||||||+..++....+..+
T Consensus 21 ~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G 54 (538)
T 3ozx_A 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFG 54 (538)
T ss_dssp CCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTT
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 3568999999999999999998888775544333
No 85
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.66 E-value=3.5e-08 Score=80.01 Aligned_cols=110 Identities=15% Similarity=0.161 Sum_probs=66.5
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC---HHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhh
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD---PSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~---~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~ 195 (264)
+|.+++++||+|+||||++++++..+...|.+++++....... .....+.|.......+ .+.+++.+.+ .
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~---~~~~~~~~~~----~ 74 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVI---ERPEEMRKYI----E 74 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEE---SSGGGGGGGC----C
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEE---CCHHHHHHHh----c
Confidence 4789999999999999999999999988888998886543211 0111223333222222 1222222211 1
Q ss_pred cCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccch
Q 024705 196 SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKV 258 (264)
Q Consensus 196 ~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~ 258 (264)
.+.++|+||+++.+.+ . +...+..+. .+ |+.|+++.+..+
T Consensus 75 -~~~dvviIDE~Q~~~~--------------~----~~~~l~~l~---~~-~~~Vi~~Gl~~~ 114 (184)
T 2orw_A 75 -EDTRGVFIDEVQFFNP--------------S----LFEVVKDLL---DR-GIDVFCAGLDLT 114 (184)
T ss_dssp -TTEEEEEECCGGGSCT--------------T----HHHHHHHHH---HT-TCEEEEEEESBC
T ss_pred -CCCCEEEEECcccCCH--------------H----HHHHHHHHH---HC-CCCEEEEeeccc
Confidence 3678999999997642 1 123455553 44 899998877554
No 86
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.66 E-value=2.6e-08 Score=89.93 Aligned_cols=61 Identities=23% Similarity=0.300 Sum_probs=41.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC--CH-HHHHHcCCCccceeEe
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL--DP-SLAEAMGIDAENLLIA 178 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~--~~-~~~~~~g~~~~~l~~~ 178 (264)
-+++|+++.|.||||||||||+..++.... ..+ -++++..... .. .+.+.+|+.+|+..++
T Consensus 43 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G-~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf 106 (390)
T 3gd7_A 43 SISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG-EIQIDGVSWDSITLEQWRKAFGVIPQKVFIF 106 (390)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEE-EEEESSCBTTSSCHHHHHHTEEEESCCCCCC
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCe-EEEECCEECCcCChHHHhCCEEEEcCCcccC
Confidence 378999999999999999999888876543 444 4455443221 12 3456688887765544
No 87
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.64 E-value=7.2e-08 Score=84.28 Aligned_cols=41 Identities=29% Similarity=0.355 Sum_probs=36.7
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~ 159 (264)
+|+++.|.|||||||||++..++....+.+++|.+.+.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~ 141 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTF 141 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCC
Confidence 68999999999999999999999998888889988877643
No 88
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.64 E-value=2.1e-08 Score=84.18 Aligned_cols=35 Identities=23% Similarity=0.507 Sum_probs=28.3
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCe
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGY 150 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~ 150 (264)
-+++|+++.|.||||||||||+..++....+..+.
T Consensus 30 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 64 (229)
T 2pze_A 30 KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK 64 (229)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccE
Confidence 37899999999999999999988887765444333
No 89
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.63 E-value=2.5e-08 Score=94.68 Aligned_cols=61 Identities=25% Similarity=0.339 Sum_probs=40.8
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC---CCHHHHHHcCCCccceeEe
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA---LDPSLAEAMGIDAENLLIA 178 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~---~~~~~~~~~g~~~~~l~~~ 178 (264)
+++|+++.|.||||||||||+..++....+..|.+ +++...- ....+.+.+|+.+|+..++
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i-~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~ 427 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI-LIDGHNIKDFLTGSLRNQIGLVQQDNILF 427 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEE-EETTEEGGGSCHHHHHHTEEEECSSCCCC
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEE-EECCEEhhhCCHHHHhhheEEEeCCCccC
Confidence 78999999999999999998887776655544444 4433211 1123455677777665443
No 90
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.63 E-value=2.8e-08 Score=94.43 Aligned_cols=61 Identities=18% Similarity=0.239 Sum_probs=41.2
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC--C-HHHHHHcCCCccceeEe
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL--D-PSLAEAMGIDAENLLIA 178 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~--~-~~~~~~~g~~~~~l~~~ 178 (264)
+++|+.+.|.||||||||||+..++....+..|.+ +++..... . ..+.+.+++.+|+..++
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i-~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf 429 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRV-EVDELDVRTVKLKDLRGHISAVPQETVLF 429 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEE-EESSSBGGGBCHHHHHHHEEEECSSCCCC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEE-EECCEEcccCCHHHHHhheEEECCCCcCc
Confidence 78999999999999999998887776555444444 44433211 1 13456678777765443
No 91
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.63 E-value=3.7e-08 Score=93.82 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=27.8
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCe
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGY 150 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~ 150 (264)
+++|+++.|.||||+|||||+..++....+..+.
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~ 133 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 133 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCCCCCCce
Confidence 5789999999999999999988887755444443
No 92
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.62 E-value=1.8e-07 Score=89.12 Aligned_cols=50 Identities=8% Similarity=0.097 Sum_probs=36.4
Q ss_pred CCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhhc
Q 024705 197 GSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLKH 263 (264)
Q Consensus 197 ~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~~ 263 (264)
.+|+++++|..++.+. ...+..+.+.|+++. + .|.|||+++|....+...
T Consensus 245 ~~P~lLlLDEPTs~LD-------------~~~~~~l~~~L~~l~---~-~g~tvIivsHdl~~~~~~ 294 (607)
T 3bk7_A 245 RKAHFYFFDEPSSYLD-------------IRQRLKVARVIRRLA---N-EGKAVLVVEHDLAVLDYL 294 (607)
T ss_dssp SCCSEEEEECTTTTCC-------------HHHHHHHHHHHHHHH---H-TTCEEEEECSCHHHHHHH
T ss_pred cCCCEEEEECCcccCC-------------HHHHHHHHHHHHHHH---h-cCCEEEEEecChHHHHhh
Confidence 5789999998776652 244555666777764 3 499999999998876543
No 93
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.61 E-value=6.3e-08 Score=92.17 Aligned_cols=61 Identities=20% Similarity=0.328 Sum_probs=41.0
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC--C-HHHHHHcCCCccceeEe
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL--D-PSLAEAMGIDAENLLIA 178 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~--~-~~~~~~~g~~~~~l~~~ 178 (264)
+++|+++.|.||||||||||+..++....+..|.+ +++..... . ..+.+.+|+.+|+..++
T Consensus 367 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i-~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~ 430 (595)
T 2yl4_A 367 IPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTI-SLDGHDIRQLNPVWLRSKIGTVSQEPILF 430 (595)
T ss_dssp ECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEE-EETTEETTTBCHHHHHHSEEEECSSCCCC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEE-EECCEEhhhCCHHHHHhceEEEccCCccc
Confidence 78999999999999999998888777654444444 44432211 1 23445677777765443
No 94
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.61 E-value=2.5e-07 Score=80.61 Aligned_cols=107 Identities=17% Similarity=0.147 Sum_probs=73.2
Q ss_pred cccCcHHHHHHhcCCCCCC-------CcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH------HHHHH
Q 024705 101 ISTGSLKLDLALGIGGLPK-------GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP------SLAEA 167 (264)
Q Consensus 101 i~tG~~~LD~~l~~gGl~~-------G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~------~~~~~ 167 (264)
++.+..+|...++ ++..+ |.++.+.|++|+||||++.+++..+...|+++++++.+..... .+++.
T Consensus 73 ~~~~~~~l~~~~~-~~~~~~i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~ 151 (297)
T 1j8m_F 73 IKIVYDELSNLFG-GDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQ 151 (297)
T ss_dssp HHHHHHHHHHHTT-CSCCCCCSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-cccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhcc
Confidence 4567778888887 55333 8899999999999999999999999989999999998875543 12444
Q ss_pred cCCCccceeEeCCCCHHHHHHHHHHHhhcCCccEEEEcCcccc
Q 024705 168 MGIDAENLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAAL 210 (264)
Q Consensus 168 ~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~ 210 (264)
.|++.-. .....++.+++.......+..++++|+||+....
T Consensus 152 ~~v~v~~--~~~~~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 152 IGVPVYG--EPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRH 192 (297)
T ss_dssp HTCCEEC--CTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCSC
T ss_pred CCeEEEe--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCc
Confidence 5554211 0012345555433323333357899999986544
No 95
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.60 E-value=3.1e-08 Score=83.54 Aligned_cols=36 Identities=28% Similarity=0.577 Sum_probs=28.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v 151 (264)
-+++|+++.|.||||||||||+..++....+..+.+
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I 62 (237)
T 2cbz_A 27 SIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62 (237)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEE
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 478999999999999999999888877654444433
No 96
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.59 E-value=1.5e-07 Score=85.91 Aligned_cols=125 Identities=16% Similarity=0.117 Sum_probs=73.4
Q ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHh
Q 024705 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (264)
Q Consensus 115 gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~ 194 (264)
.|+++..-++++||||+|||+++..++..+ +...+.++...-.... .-..+..+..+-...
T Consensus 210 ~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~~~~----------------vGese~~ir~lF~~A 270 (434)
T 4b4t_M 210 MGIRAPKGALMYGPPGTGKTLLARACAAQT---NATFLKLAAPQLVQMY----------------IGEGAKLVRDAFALA 270 (434)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGCSSC----------------SSHHHHHHHHHHHHH
T ss_pred CCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehhhhhhcc----------------cchHHHHHHHHHHHH
Confidence 467777889999999999999999998865 5566666543211110 011233333333333
Q ss_pred hcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhh
Q 024705 195 KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLL 261 (264)
Q Consensus 195 ~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~ 261 (264)
....|.+++||.+.++.+... .+. ........+.+...|..+...-...++.||.+|+.-+.++
T Consensus 271 ~~~aP~IifiDEiDal~~~R~-~~~--~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD 334 (434)
T 4b4t_M 271 KEKAPTIIFIDELDAIGTKRF-DSE--KSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLD 334 (434)
T ss_dssp HHHCSEEEEEECTHHHHCCCS-SGG--GGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCC
T ss_pred HhcCCeEEeecchhhhhhccC-CCC--CCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcC
Confidence 345789999999999875321 111 1111233344555666554333445778887776554443
No 97
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.58 E-value=1.2e-07 Score=87.56 Aligned_cols=91 Identities=16% Similarity=0.188 Sum_probs=57.0
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH------HH--HHHcCCCccceeEeCCCCHHHHHH
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP------SL--AEAMGIDAENLLIAQPDSAENLLS 188 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~------~~--~~~~g~~~~~l~~~~~~~~ee~~~ 188 (264)
+.+|+++.|.|+|||||||++..++......+++|.+.+.+..... .+ ...+++..++... .....+.+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~---~p~~tV~e 366 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGA---DSASVIFD 366 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTC---CHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCc---CHHHHHHH
Confidence 5689999999999999999999999988888888888766543221 11 2223433333111 11112222
Q ss_pred HHHHHhhcCCccEEEEcCccccc
Q 024705 189 VVDTLTKSGSIDVIVVDSVAALI 211 (264)
Q Consensus 189 ~i~~~~~~~~~~~vvIDsl~~~~ 211 (264)
.+.... ..+.++++||......
T Consensus 367 ~l~~a~-~~~~DvVLIDTaGrl~ 388 (503)
T 2yhs_A 367 AIQAAK-ARNIDVLIADTAGRLQ 388 (503)
T ss_dssp HHHHHH-HTTCSEEEECCCCSCC
T ss_pred HHHHHH-hcCCCEEEEeCCCccc
Confidence 222222 2578899999876643
No 98
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.56 E-value=3.9e-07 Score=78.16 Aligned_cols=124 Identities=19% Similarity=0.160 Sum_probs=70.0
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~ 195 (264)
|+.++..++|+||||+|||+++..++..+ +..+++++........ ....+.....+.....
T Consensus 47 ~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~~~~----------------~~~~~~~~~~~~~~~~ 107 (285)
T 3h4m_A 47 GIEPPKGILLYGPPGTGKTLLAKAVATET---NATFIRVVGSELVKKF----------------IGEGASLVKDIFKLAK 107 (285)
T ss_dssp CCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGGGGCCCS----------------TTHHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehHHHHHhc----------------cchHHHHHHHHHHHHH
Confidence 56777889999999999999999987753 5667676643221110 0111222222223334
Q ss_pred cCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhh
Q 024705 196 SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLL 261 (264)
Q Consensus 196 ~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~ 261 (264)
...+.+++||.+..+.+... .... ......++.+...+..+.......++.||++++....++
T Consensus 108 ~~~~~vl~iDEid~l~~~~~-~~~~--~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~ 170 (285)
T 3h4m_A 108 EKAPSIIFIDEIDAIAAKRT-DALT--GGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILD 170 (285)
T ss_dssp HTCSEEEEEETTHHHHBCCS-SSCC--GGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBC
T ss_pred HcCCeEEEEECHHHhcccCc-cccC--CccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcC
Confidence 45788999999999874221 1100 011123333444444442222334778888887665543
No 99
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.55 E-value=1.2e-06 Score=80.09 Aligned_cols=101 Identities=19% Similarity=0.200 Sum_probs=65.9
Q ss_pred HHHHHHhcCCCC-------CCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH------HHHHHcCCCc
Q 024705 106 LKLDLALGIGGL-------PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP------SLAEAMGIDA 172 (264)
Q Consensus 106 ~~LD~~l~~gGl-------~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~------~~~~~~g~~~ 172 (264)
.+|-.+++ ++- .++.++.++|++|+||||++..++..+...|.+|++++.+..... .+.+..|++.
T Consensus 77 ~eL~~~L~-~~~~~~~~~~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~ 155 (433)
T 3kl4_A 77 DELSKLFG-GDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQV 155 (433)
T ss_dssp HHHHHHHC-SSSCCCCSCCSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCE
T ss_pred HHHHHhcC-ccccccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCce
Confidence 44555666 331 247899999999999999999999999999999999998864332 1234445432
Q ss_pred cceeEeCCCCHHHHHHHHHHHhhcCCccEEEEcCccc
Q 024705 173 ENLLIAQPDSAENLLSVVDTLTKSGSIDVIVVDSVAA 209 (264)
Q Consensus 173 ~~l~~~~~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~ 209 (264)
-. .....++.++...........++++++||....
T Consensus 156 ~~--~~~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr 190 (433)
T 3kl4_A 156 YG--EPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGR 190 (433)
T ss_dssp EC--CTTCSCHHHHHHHHHHHTTTTTCSEEEEEECCC
T ss_pred ee--ccccCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 11 111223444443333333345799999997753
No 100
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.55 E-value=3.7e-07 Score=83.60 Aligned_cols=124 Identities=12% Similarity=0.081 Sum_probs=73.6
Q ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHh
Q 024705 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (264)
Q Consensus 115 gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~ 194 (264)
-|+++..-++++||||+|||+++..++..+ +...+.++...-.... .-..+..+..+-...
T Consensus 238 ~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s~L~sk~----------------vGesek~ir~lF~~A 298 (467)
T 4b4t_H 238 LGIDPPKGILLYGPPGTGKTLCARAVANRT---DATFIRVIGSELVQKY----------------VGEGARMVRELFEMA 298 (467)
T ss_dssp HTCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGCCCS----------------SSHHHHHHHHHHHHH
T ss_pred CCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhHHhhccc----------------CCHHHHHHHHHHHHH
Confidence 367778889999999999999999998865 5556666543211110 011233333333333
Q ss_pred hcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHh
Q 024705 195 KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLL 260 (264)
Q Consensus 195 ~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~ 260 (264)
....+.+++||.+..+.....-.+ ........+.+...|..+.......++.||.+|+.-+.+
T Consensus 299 r~~aP~IIfiDEiDai~~~R~~~~---~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~L 361 (467)
T 4b4t_H 299 RTKKACIIFFDEIDAVGGARFDDG---AGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTL 361 (467)
T ss_dssp HHTCSEEEEEECCTTTSBCCSSSS---CGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSB
T ss_pred HhcCCceEeecccccccccccCcC---CCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccC
Confidence 456899999999999885321111 111123344456666666533344567777777654443
No 101
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=98.53 E-value=1.5e-07 Score=75.81 Aligned_cols=83 Identities=18% Similarity=0.265 Sum_probs=48.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHc-----CCCccceeEeCCCCHHHHHHHHHHHhhc
Q 024705 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAM-----GIDAENLLIAQPDSAENLLSVVDTLTKS 196 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~-----g~~~~~l~~~~~~~~ee~~~~i~~~~~~ 196 (264)
+++|+|++|||||+|+.+++.. +.+++|+.+....+.++.+++ .-+..-..+..+....+.+ ... .
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~~~d~e~~~rI~~h~~~R~~~w~tiE~p~~l~~~l---~~~--~ 71 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD----APQVLYIATSQILDDEMAARIQHHKDGRPAHWRTAECWRHLDTLI---TAD--L 71 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS----CSSEEEEECCCC------CHHHHHHHTSCTTEEEECCSSCGGGTS---CTT--S
T ss_pred CEEEECCCCCcHHHHHHHHHhc----CCCeEEEecCCCCCHHHHHHHHHHHhcCCCCcEEEEcHhhHHHHH---Hhh--c
Confidence 4789999999999999998753 678999998775544222211 1111122233333333322 111 1
Q ss_pred CCccEEEEcCccccccc
Q 024705 197 GSIDVIVVDSVAALIPK 213 (264)
Q Consensus 197 ~~~~~vvIDsl~~~~~~ 213 (264)
...+.|+||+++.+...
T Consensus 72 ~~~~~VLvDclt~wl~n 88 (180)
T 1c9k_A 72 APDDAILLECITTMVTN 88 (180)
T ss_dssp CTTCEEEEECHHHHHHH
T ss_pred ccCCeEEEcCHHHHHHH
Confidence 22479999999998853
No 102
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.52 E-value=1.1e-06 Score=76.43 Aligned_cols=82 Identities=16% Similarity=0.197 Sum_probs=56.1
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhh-cCCeEEEEecCCCCCH------HHHHHcCCCccceeEeCCCCHHHHHHHH
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAYLDVENALDP------SLAEAMGIDAENLLIAQPDSAENLLSVV 190 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~-~g~~v~~~~~e~~~~~------~~~~~~g~~~~~l~~~~~~~~ee~~~~i 190 (264)
.+|+++.++|++|+||||++..++..+.. .|.+|.+++.+..... .+++..|++.. ...+..++...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~-----~~~~~~~l~~al 177 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLE-----VCYTKEEFQQAK 177 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCC-----BCSSHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeE-----ecCCHHHHHHHH
Confidence 36899999999999999999999998885 6779999998764322 12333444321 122344544444
Q ss_pred HHHhhcCCccEEEEcCc
Q 024705 191 DTLTKSGSIDVIVVDSV 207 (264)
Q Consensus 191 ~~~~~~~~~~~vvIDsl 207 (264)
... .++++++||..
T Consensus 178 ~~~---~~~dlvIiDT~ 191 (296)
T 2px0_A 178 ELF---SEYDHVFVDTA 191 (296)
T ss_dssp HHG---GGSSEEEEECC
T ss_pred HHh---cCCCEEEEeCC
Confidence 432 57899999943
No 103
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.51 E-value=4.9e-07 Score=77.28 Aligned_cols=40 Identities=18% Similarity=0.130 Sum_probs=33.9
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhc-CCeEEEEec
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDV 156 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~-g~~v~~~~~ 156 (264)
+++|++++|+|||||||||++..++....+. .+.+.+...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~ 62 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED 62 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCC
Confidence 7899999999999999999999998877665 677766653
No 104
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.50 E-value=6.7e-08 Score=83.93 Aligned_cols=34 Identities=24% Similarity=0.542 Sum_probs=27.7
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCC
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGG 149 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~ 149 (264)
-+++|+++.|.||||||||||+..++....+..|
T Consensus 60 ~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G 93 (290)
T 2bbs_A 60 KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 93 (290)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEE
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence 3789999999999999999998888776544333
No 105
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.49 E-value=4.4e-07 Score=80.99 Aligned_cols=113 Identities=10% Similarity=0.032 Sum_probs=65.0
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhhc-CCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhc
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKS 196 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~-g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~ 196 (264)
.+|.+++|+||+||||||++..++....+. ++.++.+........ ....++..+.-......+.. ..+...+.
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~--~~~~~~v~q~~~~~~~~~~~---~~La~aL~- 194 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVH--ESKKCLVNQREVHRDTLGFS---EALRSALR- 194 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC--CCSSSEEEEEEBTTTBSCHH---HHHHHHTT-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhh--hccccceeeeeeccccCCHH---HHHHHHhh-
Confidence 567799999999999999999998887765 566655442211110 00000000100000112232 23444433
Q ss_pred CCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHh
Q 024705 197 GSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLL 260 (264)
Q Consensus 197 ~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~ 260 (264)
.+|+++++|.+... . ....+.++ .+.|.+|++++|..+..
T Consensus 195 ~~PdvillDEp~d~----------------e----~~~~~~~~----~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 195 EDPDIILVGEMRDL----------------E----TIRLALTA----AETGHLVFGTLHTTSAA 234 (356)
T ss_dssp SCCSEEEESCCCSH----------------H----HHHHHHHH----HHTTCEEEEEESCSSHH
T ss_pred hCcCEEecCCCCCH----------------H----HHHHHHHH----HhcCCEEEEEEccChHH
Confidence 58999999988621 0 11222333 45699999999998765
No 106
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.48 E-value=3.4e-07 Score=79.90 Aligned_cols=43 Identities=19% Similarity=0.170 Sum_probs=37.5
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~ 159 (264)
+++|+++.|.|||||||||++..++....+.++++.+...+..
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~ 139 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 139 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 5689999999999999999999999988888888888776543
No 107
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.48 E-value=5.9e-08 Score=80.23 Aligned_cols=35 Identities=26% Similarity=0.195 Sum_probs=29.7
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v 151 (264)
++++|+++.|.||||||||||+..++.. .+..+.+
T Consensus 18 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I 52 (208)
T 3b85_A 18 AIDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV 52 (208)
T ss_dssp HHHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence 4678999999999999999999998887 6655555
No 108
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=98.47 E-value=4.2e-07 Score=75.13 Aligned_cols=111 Identities=14% Similarity=0.181 Sum_probs=68.1
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC---HHHHHHcCCCccceeEeCCCCHHHHHHHHHHHh
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD---PSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~---~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~ 194 (264)
.+|.+.+++|+.|+||||.++..+.++..+|.+|+++....... .....++|+......+.. .+++.+.+
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~---~~~~~~~~---- 98 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSA---SKDIFKHI---- 98 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSS---GGGGGGGC----
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCC---HHHHHHHH----
Confidence 56899999999999999999999999999999999986443221 134555666544433211 12222211
Q ss_pred hcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccch
Q 024705 195 KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKV 258 (264)
Q Consensus 195 ~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~ 258 (264)
. ..+++|+||..+.+.. . ....+..++ ..|+.||+.....+
T Consensus 99 ~-~~~dvViIDEaQF~~~--------------~----~V~~l~~l~----~~~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 99 T-EEMDVIAIDEVQFFDG--------------D----IVEVVQVLA----NRGYRVIVAGLDQD 139 (214)
T ss_dssp C-SSCCEEEECCGGGSCT--------------T----HHHHHHHHH----HTTCEEEEEECSBC
T ss_pred h-cCCCEEEEECcccCCH--------------H----HHHHHHHHh----hCCCEEEEEecccc
Confidence 1 3589999999998642 1 113455553 45999999887544
No 109
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.46 E-value=1.2e-06 Score=77.64 Aligned_cols=90 Identities=22% Similarity=0.275 Sum_probs=58.5
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhhc---CCeEEEEecCCCCCH-HH----HHHcCCCccceeEeCCCCHHHHHHH
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQKL---GGYCAYLDVENALDP-SL----AEAMGIDAENLLIAQPDSAENLLSV 189 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~---g~~v~~~~~e~~~~~-~~----~~~~g~~~~~l~~~~~~~~ee~~~~ 189 (264)
..+..++|+||+|+||||++..++..+... +..++|++....... .. ...+|.... ....+..+....
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~----~~~~~~~~~~~~ 118 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVP----FTGLSIAELYRR 118 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCC----SSSCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCC----CCCCCHHHHHHH
Confidence 356789999999999999999999887655 667888885433222 11 122232211 112345565555
Q ss_pred HHHHhhcC-CccEEEEcCccccc
Q 024705 190 VDTLTKSG-SIDVIVVDSVAALI 211 (264)
Q Consensus 190 i~~~~~~~-~~~~vvIDsl~~~~ 211 (264)
+....... .+.+++||.+..+.
T Consensus 119 l~~~l~~~~~~~vlilDE~~~l~ 141 (386)
T 2qby_A 119 LVKAVRDYGSQVVIVLDEIDAFV 141 (386)
T ss_dssp HHHHHHTCCSCEEEEEETHHHHH
T ss_pred HHHHHhccCCeEEEEEcChhhhh
Confidence 55554433 48899999999876
No 110
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=98.43 E-value=7.3e-07 Score=72.62 Aligned_cols=110 Identities=19% Similarity=0.210 Sum_probs=69.9
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC--CH-HHHHHcCCCccceeEeCCCCHHHHHHHHHHHh
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL--DP-SLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~--~~-~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~ 194 (264)
.+|.++.++||.|+||||.++.++.++..+|.+|+++...... .. ....++|+......+... +++.+.+.
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~---~~i~~~~~--- 79 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNS---REILKYFE--- 79 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSS---THHHHHCC---
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCH---HHHHHHHh---
Confidence 4688999999999999999999999999899999988533211 11 123334544333333222 23332221
Q ss_pred hcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccc
Q 024705 195 KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVK 257 (264)
Q Consensus 195 ~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~ 257 (264)
...++|+||..+.+.+ .+ ...++.++ +.|++||+.....
T Consensus 80 --~~~dvViIDEaqfl~~--------------~~----v~~l~~l~----~~~~~Vi~~Gl~~ 118 (191)
T 1xx6_A 80 --EDTEVIAIDEVQFFDD--------------EI----VEIVNKIA----ESGRRVICAGLDM 118 (191)
T ss_dssp --TTCSEEEECSGGGSCT--------------HH----HHHHHHHH----HTTCEEEEEECSB
T ss_pred --ccCCEEEEECCCCCCH--------------HH----HHHHHHHH----hCCCEEEEEeccc
Confidence 2589999999887542 11 23455553 3499999987654
No 111
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.41 E-value=5.6e-07 Score=80.33 Aligned_cols=43 Identities=19% Similarity=0.170 Sum_probs=37.4
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~ 159 (264)
+++|+++.|.|||||||||++..++....+.+++|.+...+..
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~ 196 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 196 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEeccccc
Confidence 4589999999999999999999999988888888888776543
No 112
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.41 E-value=2.4e-06 Score=75.06 Aligned_cols=119 Identities=19% Similarity=0.214 Sum_probs=66.6
Q ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHh
Q 024705 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (264)
Q Consensus 115 gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~ 194 (264)
|+..++.-++|+||||+|||+++..++..+ .+...++++...-.... . . ..+.....+-...
T Consensus 40 ~~~~~~~~iLL~GppGtGKT~la~ala~~~--~~~~~~~i~~~~l~~~~----~-----------g-~~~~~~~~lf~~a 101 (322)
T 1xwi_A 40 GKRTPWRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSSDLVSKW----L-----------G-ESEKLVKNLFQLA 101 (322)
T ss_dssp TTCCCCSEEEEESSSSSCHHHHHHHHHHHT--TSCEEEEEECCSSCCSS----C-----------C-SCHHHHHHHHHHH
T ss_pred CCCCCCceEEEECCCCccHHHHHHHHHHHc--CCCcEEEEEhHHHHhhh----h-----------h-HHHHHHHHHHHHH
Confidence 456667789999999999999999998865 24556666653321110 0 1 1123333333333
Q ss_pred hcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHh-ccCcEEEEEcccc
Q 024705 195 KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLC-QSHTLIIFLNQVK 257 (264)
Q Consensus 195 ~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~-~~g~tVi~i~h~~ 257 (264)
....+.+++||.+..+.+... .. ..+...+.+.+.+..+..... ..++.||.+++.-
T Consensus 102 ~~~~~~vl~iDEid~l~~~~~-~~-----~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~ 159 (322)
T 1xwi_A 102 RENKPSIIFIDEIDSLCGSRS-EN-----ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIP 159 (322)
T ss_dssp HHTSSEEEEEETTTGGGCCSS-SC-----CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCT
T ss_pred HhcCCcEEEeecHHHhccccc-cc-----cchHHHHHHHHHHHHHhcccccCCCEEEEEecCCc
Confidence 346789999999999875211 11 111223333444444432111 2456666666543
No 113
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.41 E-value=1.1e-06 Score=84.76 Aligned_cols=22 Identities=41% Similarity=0.807 Sum_probs=20.4
Q ss_pred CCCCCcEEEEEecCCCChHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLA 137 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~ 137 (264)
-+++|+++.|.||||||||||+
T Consensus 40 ~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 40 EIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEETTSEEEEECSTTSSHHHHH
T ss_pred EECCCCEEEEECCCCCCHHHHh
Confidence 3789999999999999999996
No 114
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=98.41 E-value=2.3e-06 Score=71.39 Aligned_cols=109 Identities=16% Similarity=0.132 Sum_probs=69.7
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC--HHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhh
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD--PSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~--~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~ 195 (264)
..|.+.+++|+.|+||||.++..+.++..+|.+|+++....+.. .....++|+......+... +++.+.+
T Consensus 17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~G~~~~a~~i~~~---~di~~~~----- 88 (234)
T 2orv_A 17 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLL---RDVAQEA----- 88 (234)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC-----------CEEEEESSG---GGGHHHH-----
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhcCCeeEEEecCCH---HHHHHHh-----
Confidence 35899999999999999999999999999999999987443321 3345556666554443322 3333322
Q ss_pred cCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccch
Q 024705 196 SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKV 258 (264)
Q Consensus 196 ~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~ 258 (264)
.++++|+||..+.+.. +.+.+..+ .+.|+.||+.....+
T Consensus 89 -~~~dvViIDEaQF~~~-------------------v~el~~~l----~~~gi~VI~~GL~~D 127 (234)
T 2orv_A 89 -LGVAVIGIDEGQFFPD-------------------IVEFCEAM----ANAGKTVIVAALDGT 127 (234)
T ss_dssp -TTCSEEEESSGGGCTT-------------------HHHHHHHH----HHTTCEEEEECCSBC
T ss_pred -ccCCEEEEEchhhhhh-------------------HHHHHHHH----HhCCCEEEEEecccc
Confidence 4689999999997741 12333333 557999999887744
No 115
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.40 E-value=3.9e-07 Score=93.77 Aligned_cols=62 Identities=19% Similarity=0.354 Sum_probs=41.9
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC--CC-HHHHHHcCCCccceeEeC
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA--LD-PSLAEAMGIDAENLLIAQ 179 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~--~~-~~~~~~~g~~~~~l~~~~ 179 (264)
+++|+.+.|.||+|||||||+..+.....+..|. ++++.... .. ..+.+.+|+.+|+..++.
T Consensus 413 i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~-i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~ 477 (1284)
T 3g5u_A 413 VKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGM-VSIDGQDIRTINVRYLREIIGVVSQEPVLFA 477 (1284)
T ss_dssp ECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEE-EEETTEEGGGSCHHHHHHHEEEECSSCCCCS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE-EEECCEEHHhCCHHHHHhheEEEcCCCccCC
Confidence 7899999999999999999888877655444444 44443221 11 244556888777665543
No 116
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.39 E-value=1.5e-06 Score=75.99 Aligned_cols=89 Identities=15% Similarity=0.186 Sum_probs=58.6
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH------HHHHHcCCCccceeEeCCCCHHHH-HHHH
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP------SLAEAMGIDAENLLIAQPDSAENL-LSVV 190 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~------~~~~~~g~~~~~l~~~~~~~~ee~-~~~i 190 (264)
.+|+++.|+|+||+||||++..++..+.+.|++|++++.+..... .+.+..|++. +.......+..+ ...+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~--~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATV--ISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEE--ECCSTTCCHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcE--EecCCccCHHHHHHHHH
Confidence 468999999999999999999999999888999999998754322 2344445432 100111223333 2223
Q ss_pred HHHhhcCCccEEEEcCccc
Q 024705 191 DTLTKSGSIDVIVVDSVAA 209 (264)
Q Consensus 191 ~~~~~~~~~~~vvIDsl~~ 209 (264)
... ...++++++||....
T Consensus 180 ~~a-~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 180 AHA-LARNKDVVIIDTAGR 197 (306)
T ss_dssp HHH-HHTTCSEEEEEECCC
T ss_pred HHH-HhcCCCEEEEECCCc
Confidence 222 235789999997754
No 117
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.38 E-value=3.2e-06 Score=75.23 Aligned_cols=85 Identities=15% Similarity=0.156 Sum_probs=57.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHHhhc-CCeEEEEecCCCCCH-----HHHHHcCCCccceeEeCCCCHHHHHHHHHHHhh
Q 024705 122 IVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVENALDP-----SLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~~~~~-g~~v~~~~~e~~~~~-----~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~ 195 (264)
.++|+||+|+||||++..++..+... +..+++++....... .....+|..... ...+..++...+.....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~~~~~~~~l~~~l~ 121 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPR----RGLSRDEFLALLVEHLR 121 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCS----SCCCHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCC----CCCCHHHHHHHHHHHHh
Confidence 89999999999999999999887666 578888886554432 223445543211 12345566655555443
Q ss_pred -cCCccEEEEcCcccc
Q 024705 196 -SGSIDVIVVDSVAAL 210 (264)
Q Consensus 196 -~~~~~~vvIDsl~~~ 210 (264)
..++.+++||.+..+
T Consensus 122 ~~~~~~vlilDE~~~l 137 (389)
T 1fnn_A 122 ERDLYMFLVLDDAFNL 137 (389)
T ss_dssp HTTCCEEEEEETGGGS
T ss_pred hcCCeEEEEEECcccc
Confidence 345889999998877
No 118
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.38 E-value=2.3e-06 Score=72.08 Aligned_cols=78 Identities=18% Similarity=0.123 Sum_probs=44.3
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~ 195 (264)
|+.....++|+||||+|||+++..++... +.+.++++........ .......+...+... .
T Consensus 35 g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~a-~ 95 (262)
T 2qz4_A 35 GAKVPKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGAEFVEVI---------------GGLGAARVRSLFKEA-R 95 (262)
T ss_dssp -CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETTTTSSSS---------------TTHHHHHHHHHHHHH-H
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechHHHHhhc---------------cChhHHHHHHHHHHH-H
Confidence 45566679999999999999999998865 4566666654321110 000111222222222 2
Q ss_pred cCCccEEEEcCcccccc
Q 024705 196 SGSIDVIVVDSVAALIP 212 (264)
Q Consensus 196 ~~~~~~vvIDsl~~~~~ 212 (264)
...+.+++||.+..+..
T Consensus 96 ~~~~~vl~iDeid~l~~ 112 (262)
T 2qz4_A 96 ARAPCIVYIDEIDAVGK 112 (262)
T ss_dssp HTCSEEEEEECC-----
T ss_pred hcCCeEEEEeCcchhhc
Confidence 34688999999998864
No 119
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.37 E-value=5.9e-06 Score=75.54 Aligned_cols=90 Identities=24% Similarity=0.200 Sum_probs=61.1
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH------HHHHHcCCCccceeEeCCCCHHHHHHHHHH
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP------SLAEAMGIDAENLLIAQPDSAENLLSVVDT 192 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~------~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~ 192 (264)
++.+++++|++|+||||++..++..+...|.+|++++.+..... .+++..|++.-. .....++.+++.....
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~--~~~~~dp~~i~~~al~ 176 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFG--NPQEKDAIKLAKEGVD 176 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEEC--CTTCCCHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEe--cCCCCCHHHHHHHHHH
Confidence 46899999999999999999999999989999999998765443 233444443211 0112334444433333
Q ss_pred HhhcCCccEEEEcCcccc
Q 024705 193 LTKSGSIDVIVVDSVAAL 210 (264)
Q Consensus 193 ~~~~~~~~~vvIDsl~~~ 210 (264)
.....++++|+||+....
T Consensus 177 ~a~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 177 YFKSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHHHTTCSEEEEECCCCS
T ss_pred HHHhCCCCEEEEECCCcc
Confidence 334467999999987543
No 120
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.35 E-value=1.5e-06 Score=71.87 Aligned_cols=49 Identities=22% Similarity=0.281 Sum_probs=39.5
Q ss_pred HHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCC
Q 024705 107 KLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN 158 (264)
Q Consensus 107 ~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~ 158 (264)
.+..+.. ++ ++..++|+||+|+|||+++..++..+...+..+.|++...
T Consensus 42 ~l~~~~~-~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 42 ALKSAAS-GD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp HHHHHHH-TC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred HHHHHHh-CC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 3555554 32 6788999999999999999999999888888899988643
No 121
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.33 E-value=2.2e-06 Score=74.44 Aligned_cols=124 Identities=16% Similarity=0.168 Sum_probs=68.4
Q ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHh
Q 024705 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (264)
Q Consensus 115 gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~ 194 (264)
-|++++..++|+||||+|||+++..++... +...++++... .....+|-.. .....++...
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~~~~----l~~~~~g~~~--------~~~~~~f~~a---- 104 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPE----LLTMWFGESE--------ANVREIFDKA---- 104 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TCEEEEECHHH----HHHHHHTTCT--------THHHHHHHHH----
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh---CCCEEEEEhHH----HHhhhcCchH--------HHHHHHHHHH----
Confidence 368889999999999999999999988754 45555554211 1112223211 1122222222
Q ss_pred hcCCccEEEEcCccccccccccC-CCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhh
Q 024705 195 KSGSIDVIVVDSVAALIPKCEIG-VPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLL 261 (264)
Q Consensus 195 ~~~~~~~vvIDsl~~~~~~~~~~-~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~ 261 (264)
....+.+++||.+..+.+..... +..+.... +.+...+..+.......++.||.+++....++
T Consensus 105 ~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~----~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld 168 (301)
T 3cf0_A 105 RQAAPCVLFFDELDSIAKARGGNIGDGGGAAD----RVINQILTEMDGMSTKKNVFIIGATNRPDIID 168 (301)
T ss_dssp HHTCSEEEEECSTTHHHHHHTTTTCCSSCSCC----HHHHHHHHHHHSSCTTSSEEEEEEESCGGGSC
T ss_pred HhcCCeEEEEEChHHHhhccCCCcCCcchHHH----HHHHHHHHHhhcccCCCCEEEEEecCCccccC
Confidence 23468899999999887422111 01111111 12233444443222345788888887665543
No 122
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.31 E-value=5.4e-06 Score=69.98 Aligned_cols=117 Identities=17% Similarity=0.140 Sum_probs=61.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhcCCccE
Q 024705 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSIDV 201 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~~~~~ 201 (264)
-++|+||||+||||++..++... +.+.++++...-... . .......+...+... ....+.+
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~---~~~~~~i~~~~~~~~-------------~--~~~~~~~~~~~~~~a-~~~~~~i 107 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVEM-------------F--VGVGASRVRDMFEQA-KKAAPCI 107 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---TCCEEEECSCSSTTS-------------C--CCCCHHHHHHHHHHH-HTTCSEE
T ss_pred eEEEECcCCCCHHHHHHHHHHHc---CCCEEEEeHHHHHHH-------------h--hhhhHHHHHHHHHHH-HHcCCee
Confidence 38999999999999999998765 445666654321110 0 011222223333322 3346789
Q ss_pred EEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHh
Q 024705 202 IVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLL 260 (264)
Q Consensus 202 vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~ 260 (264)
++||.+..+..... .+ ..... ....+.+...+..+.......++.||.+++..+.+
T Consensus 108 l~iDeid~l~~~~~-~~-~~~~~-~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l 163 (257)
T 1lv7_A 108 IFIDEIDAVGRQRG-AG-LGGGH-DEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVL 163 (257)
T ss_dssp EEETTHHHHTCCCS-TT-SCCTT-CHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTS
T ss_pred ehhhhhhhhccCCC-CC-cCCCc-hHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhC
Confidence 99999988764211 11 00111 12223344445444322223467777777655444
No 123
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.29 E-value=1.2e-06 Score=86.96 Aligned_cols=27 Identities=22% Similarity=0.070 Sum_probs=23.7
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHH
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~ 143 (264)
+.+|++++|+||||+||||++.+++..
T Consensus 659 ~~~g~i~~ItGpNGsGKSTlLr~ial~ 685 (934)
T 3thx_A 659 KDKQMFHIITGPNMGGKSTYIRQTGVI 685 (934)
T ss_dssp TTTBCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 567999999999999999999988543
No 124
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.28 E-value=7.6e-06 Score=72.54 Aligned_cols=90 Identities=22% Similarity=0.257 Sum_probs=60.1
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhhc------CCeEEEEecCCCCCH-----HHHHHcCCCccceeEeCCCCHHHH
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQKL------GGYCAYLDVENALDP-----SLAEAMGIDAENLLIAQPDSAENL 186 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~------g~~v~~~~~e~~~~~-----~~~~~~g~~~~~l~~~~~~~~ee~ 186 (264)
..+..++|+||+|+|||+++..++..+... +..++|++....... .....+|.... ....+..++
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~ 117 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVP----FTGLSVGEV 117 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCC----SSCCCHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCC----CCCCCHHHH
Confidence 346689999999999999999999877554 667788886554443 23444554321 112345565
Q ss_pred HHHHHHHhhc-CCccEEEEcCccccc
Q 024705 187 LSVVDTLTKS-GSIDVIVVDSVAALI 211 (264)
Q Consensus 187 ~~~i~~~~~~-~~~~~vvIDsl~~~~ 211 (264)
...+...... +++.+++||.+..+.
T Consensus 118 ~~~l~~~l~~~~~~~vlilDEi~~l~ 143 (387)
T 2v1u_A 118 YERLVKRLSRLRGIYIIVLDEIDFLP 143 (387)
T ss_dssp HHHHHHHHTTSCSEEEEEEETTTHHH
T ss_pred HHHHHHHHhccCCeEEEEEccHhhhc
Confidence 5555555433 347799999999876
No 125
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.28 E-value=7.8e-06 Score=75.57 Aligned_cols=121 Identities=18% Similarity=0.204 Sum_probs=66.6
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhc
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKS 196 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~ 196 (264)
+++| ++|+||||+|||+++..++..+ +.+.++++...-.... .| .....+...+... ..
T Consensus 48 ~p~g--vLL~GppGtGKT~Laraia~~~---~~~f~~is~~~~~~~~----~g-----------~~~~~~r~lf~~A-~~ 106 (476)
T 2ce7_A 48 MPKG--ILLVGPPGTGKTLLARAVAGEA---NVPFFHISGSDFVELF----VG-----------VGAARVRDLFAQA-KA 106 (476)
T ss_dssp CCSE--EEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGTTTCC----TT-----------HHHHHHHHHHHHH-HH
T ss_pred CCCe--EEEECCCCCCHHHHHHHHHHHc---CCCeeeCCHHHHHHHH----hc-----------ccHHHHHHHHHHH-Hh
Confidence 4444 8899999999999999998865 5556666543221110 00 0111222222222 23
Q ss_pred CCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhh
Q 024705 197 GSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLL 261 (264)
Q Consensus 197 ~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~ 261 (264)
..+.+++||.+..+..... .+ .++ ......+.+.+.+..+...-...++.||.++|..+.++
T Consensus 107 ~~p~ILfIDEid~l~~~r~-~~-~~g-~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 107 HAPCIVFIDEIDAVGRHRG-AG-LGG-GHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp TCSEEEEEETGGGTCCC------------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred cCCCEEEEechhhhhhhcc-cc-cCc-CcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 5789999999999874211 00 000 01122233445555543222346889999888776554
No 126
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.28 E-value=7.1e-06 Score=75.15 Aligned_cols=105 Identities=19% Similarity=0.246 Sum_probs=63.2
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHhhc--CCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhcC
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQKL--GGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSG 197 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~~~--g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~ 197 (264)
+..++|+||||+|||||+..++..+... +.+++|++.+..... ....+. ......+.. .. ..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~-~~~~~~----------~~~~~~~~~---~~--~~ 193 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLND-LVDSMK----------EGKLNEFRE---KY--RK 193 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHH-HHHHHH----------TTCHHHHHH---HH--TT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHH-HHHHHH----------cccHHHHHH---Hh--cC
Confidence 6679999999999999999999887665 778888875432111 111000 001122211 11 12
Q ss_pred CccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEccc
Q 024705 198 SIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQV 256 (264)
Q Consensus 198 ~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~ 256 (264)
++++++||.+..+.... ..+..+...+..+ .+.|..+|+++|.
T Consensus 194 ~~~vL~IDEi~~l~~~~------------~~q~~l~~~l~~l----~~~~~~iIitt~~ 236 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKT------------GVQTELFHTFNEL----HDSGKQIVICSDR 236 (440)
T ss_dssp TCSEEEEECGGGGSSCH------------HHHHHHHHHHHHH----HTTTCEEEEEESS
T ss_pred CCCEEEEeCcccccCCh------------HHHHHHHHHHHHH----HHCCCeEEEEECC
Confidence 68999999999876310 1222233333333 5668888888875
No 127
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.27 E-value=1.6e-05 Score=69.50 Aligned_cols=40 Identities=30% Similarity=0.300 Sum_probs=34.6
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecC
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e 157 (264)
..+..++|+||||+||||++..++..+...+.+++|++.+
T Consensus 35 ~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 35 SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 3567799999999999999999999887778889998854
No 128
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=98.27 E-value=2.5e-06 Score=70.51 Aligned_cols=110 Identities=15% Similarity=0.148 Sum_probs=69.0
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC---HHHHHHcCCCccceeEeCCCCHHHHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD---PSLAEAMGIDAENLLIAQPDSAENLLSVVDT 192 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~---~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~ 192 (264)
--..|.+.+|+|+-|+||||.++..+.++...+.+++++....+.. .....+.|...+...+... .++...+
T Consensus 24 ~~~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~---~di~~~i-- 98 (219)
T 3e2i_A 24 TYHSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKA---SEIMTHD-- 98 (219)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSG---GGGGGSC--
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCH---HHHHHHH--
Confidence 3467899999999999999988888888888888998886543221 1345556665554443322 2332221
Q ss_pred HhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcc
Q 024705 193 LTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQ 255 (264)
Q Consensus 193 ~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h 255 (264)
..++++|+||..+.+.. . +...+..++ +.|++||+..=
T Consensus 99 ---~~~~dvV~IDEaQFf~~--------------~----~v~~l~~la----~~gi~Vi~~GL 136 (219)
T 3e2i_A 99 ---LTNVDVIGIDEVQFFDD--------------E----IVSIVEKLS----ADGHRVIVAGL 136 (219)
T ss_dssp ---CTTCSEEEECCGGGSCT--------------H----HHHHHHHHH----HTTCEEEEEEE
T ss_pred ---hcCCCEEEEechhcCCH--------------H----HHHHHHHHH----HCCCEEEEeec
Confidence 24789999999997752 1 223455553 56899887643
No 129
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.26 E-value=2.7e-06 Score=76.31 Aligned_cols=112 Identities=15% Similarity=0.150 Sum_probs=65.4
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhc-CCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhh
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~-g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~ 195 (264)
+++|++++|+|||||||||++..++....+. .+.++++...... .....+++..+.-.-..+ ..+...+...+.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~--~~~~~~~~v~Q~~~g~~~---~~~~~~l~~~L~ 207 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY--VFKHKKSIVNQREVGEDT---KSFADALRAALR 207 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCS--CCCCSSSEEEEEEBTTTB---SCSHHHHHHHTT
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhh--hhccCceEEEeeecCCCH---HHHHHHHHHHhh
Confidence 5789999999999999999999999887765 6777776632211 001111221211000011 122334444443
Q ss_pred cCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccch
Q 024705 196 SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKV 258 (264)
Q Consensus 196 ~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~ 258 (264)
.+++++++|.+... .. +...++ . ...|.+|+.+.|..+
T Consensus 208 -~~pd~illdE~~d~----------------e~---~~~~l~----~-~~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 208 -EDPDVIFVGEMRDL----------------ET---VETALR----A-AETGHLVFGTLHTNT 245 (372)
T ss_dssp -SCCSEEEESCCCSH----------------HH---HHHHHH----H-HTTTCEEEECCCCCS
T ss_pred -hCcCEEEECCCCCH----------------HH---HHHHHH----H-HhcCCEEEEEECcch
Confidence 48999999987611 11 112222 1 246889999999865
No 130
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=98.26 E-value=3.9e-06 Score=68.26 Aligned_cols=110 Identities=16% Similarity=0.146 Sum_probs=72.2
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC--HHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhh
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD--PSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~--~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~ 195 (264)
..|.+..|+||.|+||||.+++.+.+...++.+|+|+..+.+.. .....++|...+...+ .+.+++....
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~---~~~~d~~~~~----- 89 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPA---CLLRDVAQEA----- 89 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEE---SSGGGGHHHH-----
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceec---CCHHHHHHhc-----
Confidence 46899999999999999999999999998999999998653322 1122233332222222 2233444321
Q ss_pred cCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchH
Q 024705 196 SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVL 259 (264)
Q Consensus 196 ~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~ 259 (264)
..+++|+||..+-+ . .+ ..++..+ .+.|+.||+.....+.
T Consensus 90 -~~~DvIlIDEaQFf-k--------------~~----ve~~~~L----~~~gk~VI~~GL~~DF 129 (195)
T 1w4r_A 90 -LGVAVIGIDEGQFF-P--------------DI----VEFCEAM----ANAGKTVIVAALDGTF 129 (195)
T ss_dssp -HTCSEEEESSGGGC-T--------------TH----HHHHHHH----HHTTCEEEEEEESBCT
T ss_pred -cCCCEEEEEchhhh-H--------------HH----HHHHHHH----HHCCCeEEEEeccccc
Confidence 25899999999988 3 11 2344444 4679999998776553
No 131
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=98.26 E-value=3.6e-06 Score=70.13 Aligned_cols=84 Identities=19% Similarity=0.167 Sum_probs=56.0
Q ss_pred CCcE-EEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHH-HcCCCccc--eeEe-----CCCCHHHHHHH
Q 024705 119 KGRI-VEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAE-AMGIDAEN--LLIA-----QPDSAENLLSV 189 (264)
Q Consensus 119 ~G~~-~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~-~~g~~~~~--l~~~-----~~~~~ee~~~~ 189 (264)
+|.+ +++.|++|+||||++.+++..++..|.+|++++.+......... .-|..... ...+ .....+..+.
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~- 82 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK- 82 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH-
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh-
Confidence 4555 77889999999999999999999999999999988765553322 22322211 1111 1123333321
Q ss_pred HHHHhhcCCccEEEEcCcccc
Q 024705 190 VDTLTKSGSIDVIVVDSVAAL 210 (264)
Q Consensus 190 i~~~~~~~~~~~vvIDsl~~~ 210 (264)
.++++++||.+...
T Consensus 83 -------~~pdlvIVDElG~~ 96 (228)
T 2r8r_A 83 -------AAPSLVLVDELAHT 96 (228)
T ss_dssp -------HCCSEEEESCTTCB
T ss_pred -------cCCCEEEEeCCCCC
Confidence 26899999998865
No 132
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.26 E-value=5.2e-06 Score=72.47 Aligned_cols=94 Identities=16% Similarity=0.170 Sum_probs=61.6
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHh--hcCCeEEEEecCCCCC-HHHHHHcCCCccceeEeCCCCHHHHHHHHHHH
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQ--KLGGYCAYLDVENALD-PSLAEAMGIDAENLLIAQPDSAENLLSVVDTL 193 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~--~~g~~v~~~~~e~~~~-~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~ 193 (264)
..+|.++.|.||+|||||||+..++.... +.++.+.+++.+.... ....+.+|+. +........+..++...+..+
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l 155 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDL 155 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHH
Confidence 47899999999999999999998888765 5667788877665332 2233445665 433333344666666655443
Q ss_pred hhc------------------------CCccEEEEcCccccc
Q 024705 194 TKS------------------------GSIDVIVVDSVAALI 211 (264)
Q Consensus 194 ~~~------------------------~~~~~vvIDsl~~~~ 211 (264)
... .+++++|+|....+.
T Consensus 156 ~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~ivIlEG~~l~~ 197 (308)
T 1sq5_A 156 KSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQ 197 (308)
T ss_dssp TTTCSCEEECCEETTTTEECTTCCEEEC-CCEEEEECTTTTC
T ss_pred hCCCCceecccccccccCcccccceecCCCCEEEECchhhCC
Confidence 211 235789999876655
No 133
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.24 E-value=2.8e-06 Score=68.24 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHH
Q 024705 122 IVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
.+.|.||||||||||+..++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999888776
No 134
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.24 E-value=5.2e-06 Score=72.94 Aligned_cols=94 Identities=13% Similarity=0.137 Sum_probs=59.2
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHH--HHHHcCC-C-ccceeEe-C---CCCHHH-HH
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPS--LAEAMGI-D-AENLLIA-Q---PDSAEN-LL 187 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~--~~~~~g~-~-~~~l~~~-~---~~~~ee-~~ 187 (264)
..+|.++.|+|++|+||||++.+++..+...|++|++++.+...... ....++- . ..++.+. . ...+.. ..
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~ 181 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVF 181 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHH
Confidence 35789999999999999999999999998889999999987643221 0111110 0 1233333 1 112222 22
Q ss_pred HHHHHHhhcCCccEEEEcCccccc
Q 024705 188 SVVDTLTKSGSIDVIVVDSVAALI 211 (264)
Q Consensus 188 ~~i~~~~~~~~~~~vvIDsl~~~~ 211 (264)
+.+.... ..++++|+||+...+.
T Consensus 182 ~~l~~~~-~~~yD~VIIDTpg~l~ 204 (320)
T 1zu4_A 182 DAIKKAK-EQNYDLLLIDTAGRLQ 204 (320)
T ss_dssp HHHHHHH-HTTCSEEEEECCCCGG
T ss_pred HHHHHHH-hcCCCEEEEcCCCccc
Confidence 3333222 3579999999766543
No 135
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.23 E-value=1e-05 Score=69.58 Aligned_cols=75 Identities=19% Similarity=0.276 Sum_probs=49.0
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhcCC
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGS 198 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~~ 198 (264)
++..++|+||||+|||+++..++... +...++++....... .....++....+........
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~----------------~~~~~~~~~~~~~~~~~~~~ 113 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATEC---SATFLNISAASLTSK----------------YVGDGEKLVRALFAVARHMQ 113 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEESTTTSSS----------------SCSCHHHHHHHHHHHHHHTC
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeHHHHhhc----------------ccchHHHHHHHHHHHHHHcC
Confidence 46779999999999999999988754 455666654321110 01123333333333334467
Q ss_pred ccEEEEcCcccccc
Q 024705 199 IDVIVVDSVAALIP 212 (264)
Q Consensus 199 ~~~vvIDsl~~~~~ 212 (264)
+.+++||.+..+..
T Consensus 114 ~~vl~iDEid~l~~ 127 (297)
T 3b9p_A 114 PSIIFIDEVDSLLS 127 (297)
T ss_dssp SEEEEEETGGGTSB
T ss_pred CcEEEeccHHHhcc
Confidence 89999999999875
No 136
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.23 E-value=4.1e-06 Score=73.43 Aligned_cols=79 Identities=22% Similarity=0.268 Sum_probs=50.7
Q ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHh
Q 024705 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (264)
Q Consensus 115 gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~ 194 (264)
++..+..-++|+||||+|||+++..++... +..+++++...- .+... ...+.....+-...
T Consensus 46 ~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~~~l--------~~~~~--------g~~~~~~~~~f~~a 106 (322)
T 3eie_A 46 GNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDL--------VSKWM--------GESEKLVKQLFAMA 106 (322)
T ss_dssp TTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEHHHH--------HTTTG--------GGHHHHHHHHHHHH
T ss_pred cCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEchHHH--------hhccc--------chHHHHHHHHHHHH
Confidence 344556779999999999999999998764 556666654210 01000 01233333333333
Q ss_pred hcCCccEEEEcCcccccc
Q 024705 195 KSGSIDVIVVDSVAALIP 212 (264)
Q Consensus 195 ~~~~~~~vvIDsl~~~~~ 212 (264)
....+.+++||.+..+.+
T Consensus 107 ~~~~~~vl~iDEid~l~~ 124 (322)
T 3eie_A 107 RENKPSIIFIDQVDALTG 124 (322)
T ss_dssp HHTSSEEEEEECGGGGSC
T ss_pred HhcCCeEEEechhhhhhc
Confidence 446789999999999875
No 137
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.23 E-value=8e-06 Score=64.66 Aligned_cols=81 Identities=17% Similarity=0.245 Sum_probs=48.4
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHHhh-------cCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHH
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEAQK-------LGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVD 191 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~~~-------~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~ 191 (264)
.+..++|+||+|+|||+++..++..+.. .+..+++++..... .+.... ......+...+.
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~------~~~~~~~~~~~~ 108 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALV-------AGAKYR------GEFEERLKGVLN 108 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHH-------TTTCSH------HHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHh-------ccCCcc------ccHHHHHHHHHH
Confidence 4567899999999999999999988754 35666666532100 000000 000111222233
Q ss_pred HHhhcCCccEEEEcCcccccc
Q 024705 192 TLTKSGSIDVIVVDSVAALIP 212 (264)
Q Consensus 192 ~~~~~~~~~~vvIDsl~~~~~ 212 (264)
......++.+++||.+..+..
T Consensus 109 ~~~~~~~~~vl~iDe~~~l~~ 129 (195)
T 1jbk_A 109 DLAKQEGNVILFIDELHTMVG 129 (195)
T ss_dssp HHHHSTTTEEEEEETGGGGTT
T ss_pred HHhhcCCCeEEEEeCHHHHhc
Confidence 333345677999999998874
No 138
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.23 E-value=1.1e-05 Score=78.84 Aligned_cols=122 Identities=20% Similarity=0.263 Sum_probs=73.3
Q ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHh
Q 024705 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (264)
Q Consensus 115 gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~ 194 (264)
.|+.+..-++++||||+|||+++..++..+ +...++++...- ++-. .-..+..+..+-...
T Consensus 233 ~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~~~~v~~~~l--------~sk~--------~gese~~lr~lF~~A 293 (806)
T 3cf2_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI--------MSKL--------AGESESNLRKAFEEA 293 (806)
T ss_dssp CCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCEEEEEEHHHH--------HSSC--------TTHHHHHHHHHHHHH
T ss_pred cCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCeEEEEEhHHh--------hccc--------chHHHHHHHHHHHHH
Confidence 467777789999999999999999888743 556666653210 1100 011233333333333
Q ss_pred hcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhh
Q 024705 195 KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLL 261 (264)
Q Consensus 195 ~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~ 261 (264)
+...+.+++||.+..+.+..+ +. ..+...+.+.+.+..+.....+.++.||.++...+.++
T Consensus 294 ~~~~PsIIfIDEiDal~~~r~--~~----~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 294 EKNAPAIIFIDELDAIAPKRE--KT----HGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp TTSCSEEEEEESGGGTCCTTT--TC----CCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSC
T ss_pred HHcCCeEEEEehhcccccccC--CC----CChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcC
Confidence 456899999999999985321 11 11133444555555555444556788887776555443
No 139
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.22 E-value=6.1e-06 Score=66.97 Aligned_cols=37 Identities=22% Similarity=0.117 Sum_probs=32.9
Q ss_pred cEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecC
Q 024705 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e 157 (264)
..++|+||+|+|||+++..++..+...+.+++|++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 6789999999999999999999888888889888753
No 140
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.22 E-value=1.5e-07 Score=76.66 Aligned_cols=26 Identities=31% Similarity=0.293 Sum_probs=23.7
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHh
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
|+.+.|.||||+||||++..++....
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 67899999999999999999988776
No 141
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.21 E-value=6.4e-06 Score=71.54 Aligned_cols=87 Identities=22% Similarity=0.279 Sum_probs=57.8
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHH------HHHHcCCCccceeEeCCCCHHHHHH-HHH
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPS------LAEAMGIDAENLLIAQPDSAENLLS-VVD 191 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~------~~~~~g~~~~~l~~~~~~~~ee~~~-~i~ 191 (264)
+|+++.++|++|+||||++.+++......+++|.+++.+...... ..+..|++. +......++.++.. .+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~--~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV--LEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE--EECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEE--EEcCCCCCHHHHHHHHHH
Confidence 688999999999999999999999998889999999987654321 122333321 10011234445533 233
Q ss_pred HHhhcCCccEEEEcCcc
Q 024705 192 TLTKSGSIDVIVVDSVA 208 (264)
Q Consensus 192 ~~~~~~~~~~vvIDsl~ 208 (264)
.. ...++++|+||+..
T Consensus 175 ~~-~~~~~D~viiDtpp 190 (295)
T 1ls1_A 175 KA-RLEARDLILVDTAG 190 (295)
T ss_dssp HH-HHHTCCEEEEECCC
T ss_pred HH-HhCCCCEEEEeCCC
Confidence 32 22478999999873
No 142
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.21 E-value=1.3e-06 Score=86.50 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=24.1
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHH
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~ 143 (264)
+++|++++|+||||+||||++.+++..
T Consensus 670 ~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 670 EDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp TTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 578999999999999999999988654
No 143
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.20 E-value=5.7e-07 Score=79.46 Aligned_cols=109 Identities=12% Similarity=0.068 Sum_probs=60.7
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhc
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKS 196 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~ 196 (264)
+++|++++|.||||||||||+..++....+..+ .+.++....... ....+.+.+... ........+...+ .
T Consensus 168 i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g-~i~i~~~~e~~~------~~~~~~i~~~~g-gg~~~r~~la~aL-~ 238 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEER-IISIEDTEEIVF------KHHKNYTQLFFG-GNITSADCLKSCL-R 238 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSC-EEEEESSCCCCC------SSCSSEEEEECB-TTBCHHHHHHHHT-T
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCc-EEEECCeecccc------ccchhEEEEEeC-CChhHHHHHHHHh-h
Confidence 457899999999999999988888776655444 444443221110 000122223211 1111222222222 2
Q ss_pred CCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccch
Q 024705 197 GSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKV 258 (264)
Q Consensus 197 ~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~ 258 (264)
.+|+++++|..... ++...++.+ ..-+.++++++|..+
T Consensus 239 ~~p~ilildE~~~~--------------------e~~~~l~~~----~~g~~tvi~t~H~~~ 276 (330)
T 2pt7_A 239 MRPDRIILGELRSS--------------------EAYDFYNVL----CSGHKGTLTTLHAGS 276 (330)
T ss_dssp SCCSEEEECCCCST--------------------HHHHHHHHH----HTTCCCEEEEEECSS
T ss_pred hCCCEEEEcCCChH--------------------HHHHHHHHH----hcCCCEEEEEEcccH
Confidence 58999999987651 022344443 333457999999876
No 144
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.20 E-value=2e-05 Score=79.10 Aligned_cols=125 Identities=13% Similarity=0.183 Sum_probs=60.8
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCC---CCCHHHHHHcCCCccceeEeCCCC-HHHHHHHHHHHhh
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN---ALDPSLAEAMGIDAENLLIAQPDS-AENLLSVVDTLTK 195 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~---~~~~~~~~~~g~~~~~l~~~~~~~-~ee~~~~i~~~~~ 195 (264)
|++++|+||||+||||++.++ +.+.....-..|+..+. +.......++|.. +.+. ....+ ..++.........
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~~~aqiG~~Vpq~~~~l~v~d~I~~rig~~-d~~~-~~~stf~~em~~~a~al~l 865 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGAS-DRIM-SGESTFFVELSETASILMH 865 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHHHHHTTTCCEESSEEEECCCSBEEEECC-----------CHHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHHHHhheeEEeccCcCCCCHHHHHHHHcCCH-HHHh-hchhhhHHHHHHHHHHHHh
Confidence 899999999999999999998 43321100001222211 0000001111111 0000 00000 1122222111222
Q ss_pred cCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhhh
Q 024705 196 SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLLK 262 (264)
Q Consensus 196 ~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~~ 262 (264)
..++.++++|.+..-... . .....+...+..+. ++.|+++|+++|..+....
T Consensus 866 a~~~sLlLLDEp~~Gtd~--~----------dg~~~~~~il~~L~---~~~g~~vl~~TH~~el~~~ 917 (1022)
T 2o8b_B 866 ATAHSLVLVDELGRGTAT--F----------DGTAIANAVVKELA---ETIKCRTLFSTHYHSLVED 917 (1022)
T ss_dssp CCTTCEEEEECTTTTSCH--H----------HHHHHHHHHHHHHH---HTSCCEEEEECCCHHHHHH
T ss_pred CCCCcEEEEECCCCCCCh--H----------HHHHHHHHHHHHHH---hcCCCEEEEEeCCHHHHHH
Confidence 357899999988765421 0 11122334555553 4459999999999876543
No 145
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.20 E-value=2.8e-06 Score=73.59 Aligned_cols=83 Identities=12% Similarity=0.147 Sum_probs=47.9
Q ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHh
Q 024705 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (264)
Q Consensus 115 gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~ 194 (264)
.|..+...++|+||||+|||+++..++..+ +.++++++...-... ..|.. .....+.+.......
T Consensus 31 ~~~~~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~~~l~~~----~~g~~--------~~~i~~~f~~a~~~~ 95 (293)
T 3t15_A 31 PNIKVPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMSAGELESG----NAGEP--------AKLIRQRYREAAEII 95 (293)
T ss_dssp TTCCCCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEHHHHHCC-------HH--------HHHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeHHHhhhc----cCchh--------HHHHHHHHHHHHHHH
Confidence 356666789999999999999999998876 566777763211000 00000 000112222232333
Q ss_pred hcCCccEEEEcCcccccc
Q 024705 195 KSGSIDVIVVDSVAALIP 212 (264)
Q Consensus 195 ~~~~~~~vvIDsl~~~~~ 212 (264)
+...+.+++||.+..+.+
T Consensus 96 ~~~~~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 96 RKGNMCCLFINDLDAGAG 113 (293)
T ss_dssp TTSSCCCEEEECCC----
T ss_pred hcCCCeEEEEechhhhcC
Confidence 456789999999998875
No 146
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.19 E-value=2.9e-06 Score=84.38 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=24.3
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHH
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIK 142 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~ 142 (264)
+++|+++.|.||||||||||+..++.
T Consensus 458 I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 458 LKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999999998884
No 147
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.19 E-value=1.4e-06 Score=89.76 Aligned_cols=60 Identities=17% Similarity=0.281 Sum_probs=40.3
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC--CC-HHHHHHcCCCcccee
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA--LD-PSLAEAMGIDAENLL 176 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~--~~-~~~~~~~g~~~~~l~ 176 (264)
-+++|+.+.|+||+||||||++..+.....+..|.+ .++...- .. ..+.+.+++.+|+..
T Consensus 440 ~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I-~idG~~i~~~~~~~lr~~i~~v~Q~~~ 502 (1321)
T 4f4c_A 440 RVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKI-TIDGVDVRDINLEFLRKNVAVVSQEPA 502 (1321)
T ss_dssp EECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEE-EETTEETTTSCHHHHHHHEEEECSSCC
T ss_pred eecCCcEEEEEecCCCcHHHHHHHhccccccccCcc-cCCCccchhccHHHHhhcccccCCcce
Confidence 378999999999999999998888777665555444 4443211 11 234556777666543
No 148
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=98.19 E-value=3e-05 Score=60.92 Aligned_cols=108 Identities=12% Similarity=0.059 Sum_probs=73.0
Q ss_pred CCccccCcHHHHHHhcCCCCCCCcEEEEEe-cCCCChHHHHHHHHHHHhh--cCCeEEEEecCCCCCHHHHHHcCCCccc
Q 024705 98 GPVISTGSLKLDLALGIGGLPKGRIVEIYG-REASGKTTLALHVIKEAQK--LGGYCAYLDVENALDPSLAEAMGIDAEN 174 (264)
Q Consensus 98 ~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G-~~GsGKTtl~~~l~~~~~~--~g~~v~~~~~e~~~~~~~~~~~g~~~~~ 174 (264)
...+|-|.+++|.-+..||++.|.+++|.+ .+|.|-..|+.-++..+.. .++.++|+.-............|+++++
T Consensus 22 ~~~~p~~~~~~~~~~~~~~~~~G~l~Ell~~~~g~gel~LL~P~La~l~~~~~~r~vlwI~Pp~~l~~~~L~~~Gl~~~r 101 (161)
T 1oft_A 22 SNGAPLLDDVIDSPSSASIEEPAAFSELSLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRER 101 (161)
T ss_dssp ---------------------CCSEEEEEEESCHHHHHHHHHHHHHHHHTCSSSSEEEEESCCTTSCHHHHHHTTCCGGG
T ss_pred CccCCCCcccccccCCCCCCCCcceEEEccCCCcHHHHHHHHHHHHHhcccccCccEEEECCCCCCCHHHHHHcCCCHHH
Confidence 466799999999877438999999999985 4777777666666666654 6789999988776677677789999999
Q ss_pred eeEeCCCCHHHHHHHHHHHhhcCCccEEEEc
Q 024705 175 LLIAQPDSAENLLSVVDTLTKSGSIDVIVVD 205 (264)
Q Consensus 175 l~~~~~~~~ee~~~~i~~~~~~~~~~~vvID 205 (264)
+.+++..+..+.++.+++.++.+.+..|+..
T Consensus 102 ll~v~~~~~~daLwa~EqALrsG~~~aVl~W 132 (161)
T 1oft_A 102 ILLLQAKDNAAALALSCEALRLGRSHTVVSW 132 (161)
T ss_dssp EEEECCSSTTHHHHHHHHHHHTTCEEEEEEC
T ss_pred EEEEECCChHHHHHHHHHHHhcCCccEEEEC
Confidence 9999999999999999999999999888875
No 149
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.17 E-value=8.3e-06 Score=71.88 Aligned_cols=26 Identities=23% Similarity=0.472 Sum_probs=22.3
Q ss_pred EEEEecCCCChHHHHHHHHHHHhhcC
Q 024705 123 VEIYGREASGKTTLALHVIKEAQKLG 148 (264)
Q Consensus 123 ~~I~G~~GsGKTtl~~~l~~~~~~~g 148 (264)
++|+||||+||||++..++..+....
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~ 64 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG 64 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 89999999999999999998665433
No 150
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.16 E-value=1.1e-05 Score=73.41 Aligned_cols=90 Identities=22% Similarity=0.280 Sum_probs=59.6
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHH------HHHHcCCCccceeEeCCCCHHHHHHHHHH
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPS------LAEAMGIDAENLLIAQPDSAENLLSVVDT 192 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~------~~~~~g~~~~~l~~~~~~~~ee~~~~i~~ 192 (264)
+|.++.++|++|+||||++..++..+...|++|++++.+...... +.+..|++. +......++.++......
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v--~~~~~~~~p~~i~~~~l~ 174 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV--LEVMDGESPESIRRRVEE 174 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE--EECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccE--EecCCCCCHHHHHHHHHH
Confidence 688999999999999999999999998889999999987644321 233345432 001112344555332222
Q ss_pred HhhcCCccEEEEcCcccc
Q 024705 193 LTKSGSIDVIVVDSVAAL 210 (264)
Q Consensus 193 ~~~~~~~~~vvIDsl~~~ 210 (264)
..+..++++|+||....+
T Consensus 175 ~~~~~~~DvVIIDTaG~l 192 (425)
T 2ffh_A 175 KARLEARDLILVDTAGRL 192 (425)
T ss_dssp HHHHTTCSEEEEECCCCS
T ss_pred HHHHCCCCEEEEcCCCcc
Confidence 222357899999976543
No 151
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.16 E-value=8.7e-07 Score=91.16 Aligned_cols=60 Identities=20% Similarity=0.372 Sum_probs=40.3
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC---HHHHHHcCCCccceeE
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD---PSLAEAMGIDAENLLI 177 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~---~~~~~~~g~~~~~l~~ 177 (264)
+++|+.+.|.||+|||||||+..+.....+..|. ++++...... ..+.+.+++.+|+..+
T Consensus 1056 i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~-I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l 1118 (1284)
T 3g5u_A 1056 VKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS-VFLDGKEIKQLNVQWLRAQLGIVSQEPIL 1118 (1284)
T ss_dssp ECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEE-EESSSSCTTSSCHHHHTTSCEEEESSCCC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCE-EEECCEEcccCCHHHHHhceEEECCCCcc
Confidence 7899999999999999999888877655444444 4454433221 1344557777776543
No 152
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.15 E-value=1.4e-05 Score=71.18 Aligned_cols=79 Identities=23% Similarity=0.283 Sum_probs=49.0
Q ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHh
Q 024705 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (264)
Q Consensus 115 gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~ 194 (264)
++..++.-++|+||||+|||+++..++..+ +...++++... . ++... . ..+.....+-...
T Consensus 79 ~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~~~-----l---~~~~~-------g-~~~~~~~~~f~~a 139 (355)
T 2qp9_X 79 GNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSD-----L---VSKWM-------G-ESEKLVKQLFAMA 139 (355)
T ss_dssp SSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEHHH-----H---HSCC-----------CHHHHHHHHHHH
T ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeHHH-----H---hhhhc-------c-hHHHHHHHHHHHH
Confidence 345566678999999999999999998876 45566665321 0 01000 0 1122222222233
Q ss_pred hcCCccEEEEcCcccccc
Q 024705 195 KSGSIDVIVVDSVAALIP 212 (264)
Q Consensus 195 ~~~~~~~vvIDsl~~~~~ 212 (264)
....+.+++||.+..+.+
T Consensus 140 ~~~~~~vl~iDEid~l~~ 157 (355)
T 2qp9_X 140 RENKPSIIFIDQVDALTG 157 (355)
T ss_dssp HHTSSEEEEEECGGGGTC
T ss_pred HHcCCeEEEEechHhhcc
Confidence 345789999999998874
No 153
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.14 E-value=2.4e-06 Score=84.98 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=28.7
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeE
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYC 151 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v 151 (264)
+.+|+++.|.||||||||||+..++....+..|.+
T Consensus 696 I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I 730 (986)
T 2iw3_A 696 CSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730 (986)
T ss_dssp EETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence 67999999999999999999988887655444444
No 154
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.14 E-value=8.2e-07 Score=91.60 Aligned_cols=59 Identities=17% Similarity=0.284 Sum_probs=40.3
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC---HHHHHHcCCCcccee
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD---PSLAEAMGIDAENLL 176 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~---~~~~~~~g~~~~~l~ 176 (264)
+++|+.+.|+||+||||||++..+..-..+..|.+ +++.-.-.. ..+.+++++.+|+..
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I-~iDG~di~~i~~~~lR~~i~~V~Qdp~ 1163 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEI-FIDGSEIKTLNPEHTRSQIAIVSQEPT 1163 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEE-EETTEETTTBCHHHHHTTEEEECSSCC
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEE-EECCEEhhhCCHHHHHhheEEECCCCE
Confidence 78999999999999999998887776555555554 444322211 245566777666543
No 155
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.13 E-value=2.1e-05 Score=68.62 Aligned_cols=38 Identities=24% Similarity=0.271 Sum_probs=34.2
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHh-hcCCeEEEEecC
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQ-KLGGYCAYLDVE 157 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~-~~g~~v~~~~~e 157 (264)
+..++|+||+|+|||+|+..++..+. ..|.+++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 67899999999999999999999998 888889988753
No 156
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.12 E-value=2.3e-06 Score=78.91 Aligned_cols=40 Identities=28% Similarity=0.328 Sum_probs=32.7
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCC-eEEEEec
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGG-YCAYLDV 156 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~-~v~~~~~ 156 (264)
+++|+++.|.||||||||||+..++..+.+.++ ..++++.
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg 175 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL 175 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC
Confidence 568999999999999999999998887766666 5455554
No 157
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.11 E-value=2.7e-05 Score=61.46 Aligned_cols=80 Identities=18% Similarity=0.240 Sum_probs=47.3
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHHhh-------cCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHH-HHHHHH
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEAQK-------LGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAE-NLLSVV 190 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~~~-------~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~e-e~~~~i 190 (264)
.+..++|+||+|+|||+++..++..+.. .+..+++++... ... +... ..... .+...+
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~-------~~~~~~~~~~~~ 107 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSS-----LIA--GAKY-------RGDFEERLKSIL 107 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHH-----HHH--HCCS-------HHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHH-----hhc--CCCc-------hhHHHHHHHHHH
Confidence 3567899999999999999999988765 255565554311 000 0000 00011 122223
Q ss_pred HHHhhcCCccEEEEcCcccccc
Q 024705 191 DTLTKSGSIDVIVVDSVAALIP 212 (264)
Q Consensus 191 ~~~~~~~~~~~vvIDsl~~~~~ 212 (264)
..+....++.+++||.+..+.+
T Consensus 108 ~~~~~~~~~~vl~iDe~~~l~~ 129 (187)
T 2p65_A 108 KEVQDAEGQVVMFIDEIHTVVG 129 (187)
T ss_dssp HHHHHTTTSEEEEETTGGGGSS
T ss_pred HHHHhcCCceEEEEeCHHHhcc
Confidence 3333334678999999998863
No 158
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.10 E-value=6.3e-06 Score=75.35 Aligned_cols=100 Identities=22% Similarity=0.242 Sum_probs=62.0
Q ss_pred HHHHHhcCCC---C--CCC--cEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH------HHHHHcCCCcc
Q 024705 107 KLDLALGIGG---L--PKG--RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP------SLAEAMGIDAE 173 (264)
Q Consensus 107 ~LD~~l~~gG---l--~~G--~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~------~~~~~~g~~~~ 173 (264)
+|..+++ ++ + .++ .++.|+|++|+||||++..++..+...|.+|++++.+..... ...+..|++.-
T Consensus 80 ~l~~ll~-~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~ 158 (432)
T 2v3c_C 80 ELVKLLG-EEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIY 158 (432)
T ss_dssp HHHHHHC-CSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEE
T ss_pred HHHHHhC-CCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceE
Confidence 4566776 44 3 223 589999999999999999999999988999999998754322 12333444321
Q ss_pred ceeEeCCCCHHHH-HHHHHHHhhcCCccEEEEcCccccc
Q 024705 174 NLLIAQPDSAENL-LSVVDTLTKSGSIDVIVVDSVAALI 211 (264)
Q Consensus 174 ~l~~~~~~~~ee~-~~~i~~~~~~~~~~~vvIDsl~~~~ 211 (264)
.... ...++.++ ...+..+ .++++++||......
T Consensus 159 ~~~~-~~~dp~~i~~~~l~~~---~~~D~vIIDT~G~~~ 193 (432)
T 2v3c_C 159 GDET-RTKSPVDIVKEGMEKF---KKADVLIIDTAGRHK 193 (432)
T ss_dssp CCSS-SCCSSSTTHHHHHHTT---SSCSEEEEECCCSCS
T ss_pred ecCC-CCCCHHHHHHHHHHHh---hCCCEEEEcCCCCcc
Confidence 1100 00111112 1222222 578899999876553
No 159
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.09 E-value=1.8e-05 Score=68.41 Aligned_cols=85 Identities=14% Similarity=0.152 Sum_probs=54.7
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH-HHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhcCC
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP-SLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGS 198 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~-~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~~ 198 (264)
...++|+||||+|||+++..++......++++++++....... ...+.+|........... ..+... +....
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~---~~~~~~----~~~~~ 119 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEG---GQLTEA----VRRRP 119 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTC---CHHHHH----HHHCS
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCcccccccc---chHHHH----HHhCC
Confidence 4579999999999999999999988777777888876544333 334445654332111100 122222 22345
Q ss_pred ccEEEEcCccccc
Q 024705 199 IDVIVVDSVAALI 211 (264)
Q Consensus 199 ~~~vvIDsl~~~~ 211 (264)
..+++||.+..+.
T Consensus 120 ~~vl~lDEi~~l~ 132 (311)
T 4fcw_A 120 YSVILFDAIEKAH 132 (311)
T ss_dssp SEEEEEETGGGSC
T ss_pred CeEEEEeChhhcC
Confidence 6799999987664
No 160
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.07 E-value=1.9e-05 Score=67.72 Aligned_cols=75 Identities=31% Similarity=0.302 Sum_probs=43.9
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhc
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKS 196 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~ 196 (264)
+++| ++|+||||+|||||+..++... +...++++........ ....+..+..+-.....
T Consensus 43 ~~~G--vlL~Gp~GtGKTtLakala~~~---~~~~i~i~g~~l~~~~----------------~~~~~~~i~~vf~~a~~ 101 (274)
T 2x8a_A 43 TPAG--VLLAGPPGCGKTLLAKAVANES---GLNFISVKGPELLNMY----------------VGESERAVRQVFQRAKN 101 (274)
T ss_dssp CCSE--EEEESSTTSCHHHHHHHHHHHT---TCEEEEEETTTTCSST----------------THHHHHHHHHHHHHHHH
T ss_pred CCCe--EEEECCCCCcHHHHHHHHHHHc---CCCEEEEEcHHHHhhh----------------hhHHHHHHHHHHHHHHh
Confidence 4455 9999999999999999988754 3345566543211110 00011112222222223
Q ss_pred CCccEEEEcCcccccc
Q 024705 197 GSIDVIVVDSVAALIP 212 (264)
Q Consensus 197 ~~~~~vvIDsl~~~~~ 212 (264)
..+.++++|.+..+..
T Consensus 102 ~~p~i~~~Deid~~~~ 117 (274)
T 2x8a_A 102 SAPCVIFFDEVDALCP 117 (274)
T ss_dssp TCSEEEEEETCTTTCC
T ss_pred cCCCeEeeehhhhhhc
Confidence 4678999999988763
No 161
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.05 E-value=4.2e-05 Score=61.86 Aligned_cols=68 Identities=13% Similarity=0.227 Sum_probs=42.5
Q ss_pred EEEEecCCCChHHHHHHHHHHHhhcCCe--EEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhh-----
Q 024705 123 VEIYGREASGKTTLALHVIKEAQKLGGY--CAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK----- 195 (264)
Q Consensus 123 ~~I~G~~GsGKTtl~~~l~~~~~~~g~~--v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~----- 195 (264)
++|+||+|+|||+++..++..+...+.. .+.++... ......+...+.....
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~ 99 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD---------------------ERGIDVVRHKIKEFARTAPIG 99 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC---------------------TTCHHHHHHHHHHHHTSCCST
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc---------------------ccChHHHHHHHHHHhcccCCC
Confidence 8999999999999999998877544322 33333221 1122333333333322
Q ss_pred cCCccEEEEcCccccc
Q 024705 196 SGSIDVIVVDSVAALI 211 (264)
Q Consensus 196 ~~~~~~vvIDsl~~~~ 211 (264)
..+..+++||.+..+.
T Consensus 100 ~~~~~vliiDe~~~l~ 115 (226)
T 2chg_A 100 GAPFKIIFLDEADALT 115 (226)
T ss_dssp TCSCEEEEEETGGGSC
T ss_pred ccCceEEEEeChhhcC
Confidence 2467899999988775
No 162
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.05 E-value=4.2e-06 Score=74.05 Aligned_cols=43 Identities=23% Similarity=0.117 Sum_probs=37.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCC
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN 158 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~ 158 (264)
-+.+|.++.|.||||+|||||+..++....+.++++.+++.+.
T Consensus 51 ~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~ 93 (337)
T 2qm8_A 51 QTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDP 93 (337)
T ss_dssp GCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcC
Confidence 4678999999999999999999999988888888888887554
No 163
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.03 E-value=3.1e-06 Score=67.94 Aligned_cols=39 Identities=23% Similarity=0.210 Sum_probs=30.6
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecC
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e 157 (264)
++++|+++.|.|||||||||++..++.. .+.+.++++.+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~d 43 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL---PGVPKVHFHSD 43 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC---SSSCEEEECTT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc---cCCCeEEEccc
Confidence 5889999999999999999999988764 34445666643
No 164
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.02 E-value=1.2e-05 Score=78.80 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=24.8
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHh
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
++|++++|.||||+||||++..++....
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~~ 632 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIAL 632 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 6799999999999999999999887543
No 165
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.01 E-value=5.5e-05 Score=67.92 Aligned_cols=76 Identities=21% Similarity=0.302 Sum_probs=47.2
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhcC
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSG 197 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~ 197 (264)
.++..++|+||||+|||+++..++.. .+..+++++........ .| . .+.....+.......
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~---~~~~~~~v~~~~l~~~~----~g-----------~-~~~~~~~~~~~a~~~ 206 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAE---SNATFFNISAASLTSKY----VG-----------E-GEKLVRALFAVAREL 206 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHH---TTCEEEEECSCCC-----------------------CHHHHHHHHHHHHHS
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh---hcCcEEEeeHHHhhccc----cc-----------h-HHHHHHHHHHHHHhc
Confidence 34678999999999999999998664 46677777654322210 00 0 122222222233345
Q ss_pred CccEEEEcCcccccc
Q 024705 198 SIDVIVVDSVAALIP 212 (264)
Q Consensus 198 ~~~~vvIDsl~~~~~ 212 (264)
.+.+++||.+..+..
T Consensus 207 ~~~il~iDEid~l~~ 221 (389)
T 3vfd_A 207 QPSIIFIDQVDSLLC 221 (389)
T ss_dssp SSEEEEEETGGGGC-
T ss_pred CCeEEEEECchhhcc
Confidence 778999999999874
No 166
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.01 E-value=3.3e-05 Score=68.67 Aligned_cols=76 Identities=13% Similarity=0.259 Sum_probs=48.6
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhcC
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSG 197 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~ 197 (264)
.+...++|+||||+|||+++..++... +..+++++........ ....+.....+.......
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~l~~~~----------------~g~~~~~~~~~~~~a~~~ 175 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISASSLTSKW----------------VGEGEKMVRALFAVARCQ 175 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGGGGCCSS----------------TTHHHHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehHHhhccc----------------cchHHHHHHHHHHHHHhc
Confidence 456679999999999999999997753 5667777653221110 001222222232333345
Q ss_pred CccEEEEcCcccccc
Q 024705 198 SIDVIVVDSVAALIP 212 (264)
Q Consensus 198 ~~~~vvIDsl~~~~~ 212 (264)
.+.+++||.+..+.+
T Consensus 176 ~~~vl~iDEid~l~~ 190 (357)
T 3d8b_A 176 QPAVIFIDEIDSLLS 190 (357)
T ss_dssp CSEEEEEETHHHHTB
T ss_pred CCeEEEEeCchhhhc
Confidence 789999999998874
No 167
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.00 E-value=1.8e-05 Score=70.91 Aligned_cols=107 Identities=18% Similarity=0.205 Sum_probs=69.3
Q ss_pred CCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhc--CCeEEEEecCCCCCH--HHHHHcCCCcc
Q 024705 98 GPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL--GGYCAYLDVENALDP--SLAEAMGIDAE 173 (264)
Q Consensus 98 ~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~--g~~v~~~~~e~~~~~--~~~~~~g~~~~ 173 (264)
.+.+.||+..+|-++. +.+|+.+.|.||+|+||||++..++..+... +-.|+|....+.... ...+.+ +
T Consensus 155 ~~~~~tGiraID~~~p---i~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~----~ 227 (422)
T 3ice_A 155 GSTEDLTARVLDLASP---IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLV----K 227 (422)
T ss_dssp CCTTHHHHHHHHHHSC---CBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTC----S
T ss_pred CCcccccceeeeeeee---ecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHh----C
Confidence 3688999999999886 8899999999999999999999998877654 345677654443332 122222 1
Q ss_pred ceeEeC--CCCHHHH-------HHHHHHHhhcCCccEEEEcCccccc
Q 024705 174 NLLIAQ--PDSAENL-------LSVVDTLTKSGSIDVIVVDSVAALI 211 (264)
Q Consensus 174 ~l~~~~--~~~~ee~-------~~~i~~~~~~~~~~~vvIDsl~~~~ 211 (264)
...+.. ..++..- +...+.+...++--++++|+++.+.
T Consensus 228 ~~vV~atadep~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~A 274 (422)
T 3ice_A 228 GEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLA 274 (422)
T ss_dssp SEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHHH
Confidence 122221 1222221 1223344454556678899998765
No 168
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.99 E-value=1.7e-05 Score=73.60 Aligned_cols=120 Identities=21% Similarity=0.346 Sum_probs=66.3
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~ 195 (264)
|.++..-++|+||||+|||+++..++... +...++++...-... +. ......+...+.. ..
T Consensus 234 g~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~~l~~~-------~~--------g~~~~~~~~~f~~-A~ 294 (489)
T 3hu3_A 234 GVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSK-------LA--------GESESNLRKAFEE-AE 294 (489)
T ss_dssp TCCCCCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHHHHHTS-------CT--------THHHHHHHHHHHH-HH
T ss_pred CCCCCCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEchHhhhh-------hc--------chhHHHHHHHHHH-HH
Confidence 35666779999999999999999987643 667777764211000 00 0001112222222 23
Q ss_pred cCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHh
Q 024705 196 SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLL 260 (264)
Q Consensus 196 ~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~ 260 (264)
...+.+++||.+..+.+... . .......+.....++.+.......++.||.+++..+.+
T Consensus 295 ~~~p~iLfLDEId~l~~~~~--~----~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~L 353 (489)
T 3hu3_A 295 KNAPAIIFIDELDAIAPKRE--K----THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSI 353 (489)
T ss_dssp HTCSEEEEEESHHHHCBCTT--S----CCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGB
T ss_pred hcCCcEEEecchhhhccccc--c----ccchHHHHHHHHHHHHhhccccCCceEEEEecCCcccc
Confidence 45688999999998885321 1 11123333334444444322234567777777655443
No 169
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.98 E-value=3e-05 Score=68.82 Aligned_cols=87 Identities=20% Similarity=0.263 Sum_probs=56.0
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHhhc--------CCeEEEEecCCCC-CH-----HHHHHc-CCCccceeEeCCCCHH
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQKL--------GGYCAYLDVENAL-DP-----SLAEAM-GIDAENLLIAQPDSAE 184 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~~~--------g~~v~~~~~e~~~-~~-----~~~~~~-g~~~~~l~~~~~~~~e 184 (264)
+..++|+||+|+|||+++..++..+... +..+++++..... .. .....+ |..... ...+..
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~~~~ 120 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPK----HGINLG 120 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCS----SSSCTH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCC----CCCCHH
Confidence 4589999999999999999999887654 7788888754332 22 112222 332211 122335
Q ss_pred HHHHHHHHHhhcCCccEEEEcCccccc
Q 024705 185 NLLSVVDTLTKSGSIDVIVVDSVAALI 211 (264)
Q Consensus 185 e~~~~i~~~~~~~~~~~vvIDsl~~~~ 211 (264)
++...+.......+. +++||.+..+.
T Consensus 121 ~~~~~l~~~l~~~~~-vlilDEi~~l~ 146 (384)
T 2qby_B 121 EYIDKIKNGTRNIRA-IIYLDEVDTLV 146 (384)
T ss_dssp HHHHHHHHHHSSSCE-EEEEETTHHHH
T ss_pred HHHHHHHHHhccCCC-EEEEECHHHhc
Confidence 555555555544444 99999998876
No 170
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.97 E-value=3.7e-05 Score=70.25 Aligned_cols=85 Identities=20% Similarity=0.205 Sum_probs=57.6
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHhhc-CCeEEEEecCCCCCHH------HHHHcCCCccceeEeCC---CCHHHHHHH
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVENALDPS------LAEAMGIDAENLLIAQP---DSAENLLSV 189 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~~~-g~~v~~~~~e~~~~~~------~~~~~g~~~~~l~~~~~---~~~ee~~~~ 189 (264)
..++.++|++|+||||++.+++..+... |.+|++++.+...... .....|++ ++.. .++.+++..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~-----v~~~~~~~dp~~i~~~ 174 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVD-----FFPSDVGQKPVDIVNA 174 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCE-----ECCCCSSSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCee-----EEeCCCCCCHHHHHHH
Confidence 4688899999999999999999999988 9999999998654421 23333432 2211 244555332
Q ss_pred HHHHhhcCCccEEEEcCccc
Q 024705 190 VDTLTKSGSIDVIVVDSVAA 209 (264)
Q Consensus 190 i~~~~~~~~~~~vvIDsl~~ 209 (264)
.-......++++|+||+...
T Consensus 175 ~l~~~~~~~~D~VIIDTpG~ 194 (433)
T 2xxa_A 175 ALKEAKLKFYDVLLVDTAGR 194 (433)
T ss_dssp HHHHHHHTTCSEEEEECCCC
T ss_pred HHHHHHhCCCCEEEEECCCc
Confidence 22222335789999998643
No 171
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.96 E-value=8.8e-06 Score=66.63 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=34.0
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCC
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN 158 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~ 158 (264)
.++|+++.|.||||||||||+..++......|..+.++..+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~ 60 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCC
Confidence 468999999999999999999999887765554566666554
No 172
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.96 E-value=8.3e-06 Score=74.78 Aligned_cols=80 Identities=20% Similarity=0.287 Sum_probs=49.1
Q ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHh
Q 024705 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (264)
Q Consensus 115 gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~ 194 (264)
|+..+..-++|+||||+|||+++..++..+ .+..+++++....... ..|.. ......++...
T Consensus 162 ~~~~~~~~vLL~GppGtGKT~lA~aia~~~--~~~~~~~v~~~~l~~~----~~g~~--------~~~~~~~f~~a---- 223 (444)
T 2zan_A 162 GKRTPWRGILLFGPPGTGKSYLAKAVATEA--NNSTFFSISSSDLVSK----WLGES--------EKLVKNLFQLA---- 223 (444)
T ss_dssp GGGCCCSEEEEECSTTSSHHHHHHHHHHHC--CSSEEEEECCC-------------C--------CCTHHHHHHHH----
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHHHc--CCCCEEEEeHHHHHhh----hcchH--------HHHHHHHHHHH----
Confidence 345566789999999999999999998865 2455666654321111 11111 12233343333
Q ss_pred hcCCccEEEEcCcccccc
Q 024705 195 KSGSIDVIVVDSVAALIP 212 (264)
Q Consensus 195 ~~~~~~~vvIDsl~~~~~ 212 (264)
....+.+++||.+..+.+
T Consensus 224 ~~~~~~vl~iDEid~l~~ 241 (444)
T 2zan_A 224 RENKPSIIFIDEIDSLCG 241 (444)
T ss_dssp HHSCSEEEEESCTTTTCC
T ss_pred HHcCCeEEEEechHhhcc
Confidence 235789999999999874
No 173
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.95 E-value=7.5e-05 Score=69.41 Aligned_cols=102 Identities=17% Similarity=0.108 Sum_probs=63.1
Q ss_pred HHHHHHhcCC---CC----CCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHH------HHHHcCCCc
Q 024705 106 LKLDLALGIG---GL----PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPS------LAEAMGIDA 172 (264)
Q Consensus 106 ~~LD~~l~~g---Gl----~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~------~~~~~g~~~ 172 (264)
.+|..+++ + ++ .+..++.|+|++|+||||++..++..+...|.++++++.|...... ...+.+++.
T Consensus 81 ~eL~~ll~-~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v 159 (504)
T 2j37_W 81 KELVKLVD-PGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPF 159 (504)
T ss_dssp HHHHHHHC-CCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHhc-cccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceE
Confidence 34666776 4 23 2356899999999999999999999998889999999987644321 223334431
Q ss_pred cceeEeCCCCHHHHH-HHHHHHhhcCCccEEEEcCccccc
Q 024705 173 ENLLIAQPDSAENLL-SVVDTLTKSGSIDVIVVDSVAALI 211 (264)
Q Consensus 173 ~~l~~~~~~~~ee~~-~~i~~~~~~~~~~~vvIDsl~~~~ 211 (264)
-. .....++.++. ..+..+ ...+.++++||......
T Consensus 160 ~~--~~~~~dp~~i~~~al~~~-~~~~~DvvIIDTpG~~~ 196 (504)
T 2j37_W 160 YG--SYTEMDPVIIASEGVEKF-KNENFEIIIVDTSGRHK 196 (504)
T ss_dssp EE--CCCCSCHHHHHHHHHHHH-HHTTCCEEEEEECCCCT
T ss_pred Ec--cCCCCCHHHHHHHHHHHH-HHCCCcEEEEeCCCCcc
Confidence 11 01122333433 223322 23578899999876553
No 174
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.95 E-value=1.2e-05 Score=62.02 Aligned_cols=38 Identities=18% Similarity=0.134 Sum_probs=29.0
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecC
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e 157 (264)
.+..++|+||+|+|||+++..+.......+.+.+ ++..
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~ 60 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YREL 60 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEEC
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECC
Confidence 4456999999999999999998876655566655 5543
No 175
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.94 E-value=4.7e-06 Score=65.70 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=30.4
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~ 152 (264)
-+++|+++.|.||+|||||||+..++... +..+.|.
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~ 64 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVK 64 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEE
Confidence 46899999999999999999999998887 6555543
No 176
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.94 E-value=2.3e-05 Score=77.02 Aligned_cols=121 Identities=21% Similarity=0.275 Sum_probs=66.7
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~ 195 (264)
|+++|..++|+||||+||||++..++..+ +...++++.... .+.. ....+..+..+-....
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l---~~~~i~v~~~~l--------~~~~--------~g~~~~~l~~vf~~a~ 294 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEI--------MSKL--------AGESESNLRKAFEEAE 294 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTT---TCEEEEEEHHHH--------SSSS--------TTHHHHHHHHHHHHHH
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCcEEEEEchHh--------hhhh--------hhhHHHHHHHHHHHHH
Confidence 68899999999999999999999987643 455555553211 1100 0011222222222222
Q ss_pred cCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhh
Q 024705 196 SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLL 261 (264)
Q Consensus 196 ~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~ 261 (264)
...+.++++|.+..+.+.... .......+.....+..+.......++.+|.+++..+.++
T Consensus 295 ~~~p~il~iDEid~l~~~~~~------~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld 354 (806)
T 1ypw_A 295 KNAPAIIFIDELDAIAPKREK------THGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp HHCSEEEEEESGGGTSCTTSC------CCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSC
T ss_pred hcCCcEEEeccHHHhhhcccc------ccchHHHHHHHHHHHHhhhhcccccEEEecccCCchhcC
Confidence 346789999999988742111 111222332233333222121245788888887755543
No 177
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.93 E-value=6.9e-06 Score=72.95 Aligned_cols=46 Identities=22% Similarity=0.219 Sum_probs=39.0
Q ss_pred CCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhh
Q 024705 98 GPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK 146 (264)
Q Consensus 98 ~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~ 146 (264)
...+.||+..||.++. +.+|+.+.|.||||+|||||+..++.....
T Consensus 52 ~~~~~tg~~ald~ll~---i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 52 DQPFILGVRAIDGLLT---CGIGQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp CSEECCSCHHHHHHSC---EETTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred ceecCCCCEEEEeeee---ecCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4466789999999975 999999999999999999998777776543
No 178
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.92 E-value=0.00012 Score=70.53 Aligned_cols=56 Identities=5% Similarity=0.161 Sum_probs=36.2
Q ss_pred HHHHHHhhc-CCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHh
Q 024705 188 SVVDTLTKS-GSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLL 260 (264)
Q Consensus 188 ~~i~~~~~~-~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~ 260 (264)
.+.+.++.. .+|+++++|..++-.. ....+.+.+.++++ ++.|+|||+++|..+.+
T Consensus 553 ~iAraL~~~p~~p~llllDEPt~~LD-------------~~~~~~i~~~l~~l----~~~g~tvi~vtHd~~~~ 609 (670)
T 3ux8_A 553 KLAAELHRRSNGRTLYILDEPTTGLH-------------VDDIARLLDVLHRL----VDNGDTVLVIEHNLDVI 609 (670)
T ss_dssp HHHHHHHSCCCSCEEEEEESTTTTCC-------------HHHHHHHHHHHHHH----HHTTCEEEEECCCHHHH
T ss_pred HHHHHHhhCCCCCcEEEEeCCCCCCC-------------HHHHHHHHHHHHHH----HHCCCEEEEEeCCHHHH
Confidence 334444432 2467999998776552 13444456666666 34599999999998765
No 179
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.91 E-value=3e-05 Score=75.61 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=23.6
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHh
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
|++++|+||||+||||++..++....
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~ 601 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIAL 601 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhh
Confidence 89999999999999999999987653
No 180
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.91 E-value=3.4e-05 Score=69.69 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=23.5
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
-+.+| +++|+||||+|||||+..+...+
T Consensus 57 ~~~~G-~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 57 ELGGG-FCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp ECCSS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred ecCCC-cEEEECCCCCCHHHHHHHHHHHh
Confidence 37789 99999999999999987775543
No 181
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.91 E-value=0.00014 Score=62.74 Aligned_cols=77 Identities=19% Similarity=0.234 Sum_probs=47.7
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcC----CeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHH
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLG----GYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDT 192 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g----~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~ 192 (264)
-.++..++|+||||+|||+++..++..+...+ .++++++...-.... + ..........+..
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~----~-----------g~~~~~~~~~~~~ 128 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQY----I-----------GHTAPKTKEVLKR 128 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSS----T-----------TCHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhc----c-----------cccHHHHHHHHHh
Confidence 34556799999999999999999988876543 256666643211100 0 0111222222222
Q ss_pred HhhcCCccEEEEcCcccccc
Q 024705 193 LTKSGSIDVIVVDSVAALIP 212 (264)
Q Consensus 193 ~~~~~~~~~vvIDsl~~~~~ 212 (264)
....+++||.+..+..
T Consensus 129 ----~~~~vl~iDEid~l~~ 144 (309)
T 3syl_A 129 ----AMGGVLFIDEAYYLYR 144 (309)
T ss_dssp ----HTTSEEEEETGGGSCC
T ss_pred ----cCCCEEEEEChhhhcc
Confidence 2567999999998873
No 182
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.91 E-value=4.9e-05 Score=75.31 Aligned_cols=25 Identities=40% Similarity=0.658 Sum_probs=23.0
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHH
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVI 141 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~ 141 (264)
+++|+++.|+|+||||||||+..++
T Consensus 647 I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 647 IPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp EESSSEEECCBCTTSSHHHHHTTTH
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 6789999999999999999998865
No 183
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.91 E-value=5.5e-05 Score=61.14 Aligned_cols=84 Identities=17% Similarity=0.207 Sum_probs=57.5
Q ss_pred EEEEE-ecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhcCCcc
Q 024705 122 IVEIY-GREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSID 200 (264)
Q Consensus 122 ~~~I~-G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~~~~ 200 (264)
++.++ +..|+||||++.+++..++..|.+|++++.+..... ...++....++.+..... +.+...+..+. ..++
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~--~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~--~~yD 77 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSL--TNWSKAGKAAFDVFTAAS-EKDVYGIRKDL--ADYD 77 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHH--HHHHTTSCCSSEEEECCS-HHHHHTHHHHT--TTSS
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCH--HHHHhcCCCCCcEEecCc-HHHHHHHHHhc--CCCC
Confidence 34455 669999999999999999999999999998854332 233344444444443333 55555555553 4689
Q ss_pred EEEEcCcccc
Q 024705 201 VIVVDSVAAL 210 (264)
Q Consensus 201 ~vvIDsl~~~ 210 (264)
+|+||.-...
T Consensus 78 ~viiD~~~~~ 87 (206)
T 4dzz_A 78 FAIVDGAGSL 87 (206)
T ss_dssp EEEEECCSSS
T ss_pred EEEEECCCCC
Confidence 9999986554
No 184
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.90 E-value=9.1e-05 Score=60.26 Aligned_cols=92 Identities=15% Similarity=0.235 Sum_probs=60.4
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC-C---HHHHHHcCCCccc----eeEeCCC------CHHH
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL-D---PSLAEAMGIDAEN----LLIAQPD------SAEN 185 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~-~---~~~~~~~g~~~~~----l~~~~~~------~~ee 185 (264)
...+.+++++|.||||.+..++..++..|.+|+++.+.... . ....+.+++.... +.+..+. ...+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHH
Confidence 34677888899999999999999999999999999876542 1 1344555432211 1111111 0112
Q ss_pred HHHHHHHHhhcCCccEEEEcCccccc
Q 024705 186 LLSVVDTLTKSGSIDVIVVDSVAALI 211 (264)
Q Consensus 186 ~~~~i~~~~~~~~~~~vvIDsl~~~~ 211 (264)
....+...+.+..+++||+|.++...
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al 133 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMV 133 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccc
Confidence 23344555666789999999998765
No 185
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.90 E-value=1.1e-05 Score=65.61 Aligned_cols=41 Identities=32% Similarity=0.399 Sum_probs=33.6
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecC
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e 157 (264)
.++|.++.|.|||||||||++..++..+...|..+.|++.+
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d 62 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGD 62 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCc
Confidence 36899999999999999999999998876556555677754
No 186
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.87 E-value=2.6e-05 Score=63.52 Aligned_cols=43 Identities=23% Similarity=0.268 Sum_probs=36.5
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCC
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN 158 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~ 158 (264)
-.++|.++.|.|++||||||++..++......++.+.+++.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 3567899999999999999999999888777788888886654
No 187
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.87 E-value=5.1e-05 Score=75.39 Aligned_cols=25 Identities=32% Similarity=0.601 Sum_probs=23.0
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHH
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVI 141 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~ 141 (264)
+++|+++.|+|+||||||||+..++
T Consensus 665 I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 665 FPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp EESSSEEEEECSTTSSHHHHHTTTH
T ss_pred ECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 6889999999999999999998865
No 188
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.84 E-value=3.3e-05 Score=64.96 Aligned_cols=35 Identities=37% Similarity=0.358 Sum_probs=26.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEe
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~ 155 (264)
-+++| ++|+||||+||||++..++... +.+.++++
T Consensus 47 ~~~~g--~ll~G~~G~GKTtl~~~i~~~~---~~~~i~~~ 81 (254)
T 1ixz_A 47 RIPKG--VLLVGPPGVGKTHLARAVAGEA---RVPFITAS 81 (254)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHHT---TCCEEEEE
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHHHh---CCCEEEee
Confidence 34556 9999999999999999888754 23445554
No 189
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.84 E-value=1.6e-05 Score=63.36 Aligned_cols=39 Identities=28% Similarity=0.275 Sum_probs=32.3
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEec
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~ 156 (264)
.+|.++.|.|++||||||++..++..+...|.++++++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 679999999999999999999998877665667777764
No 190
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.84 E-value=1.1e-05 Score=72.07 Aligned_cols=38 Identities=24% Similarity=0.291 Sum_probs=29.8
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEe
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~ 155 (264)
+++|++++|+||+|||||||+..++....+.. +.+.++
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~-g~I~ie 209 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQEIPFDQ-RLITIE 209 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHTTSCTTS-CEEEEE
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhcCCCCc-eEEEEC
Confidence 56899999999999999999888877654444 455554
No 191
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.84 E-value=3e-05 Score=75.81 Aligned_cols=120 Identities=19% Similarity=0.198 Sum_probs=64.6
Q ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHh
Q 024705 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (264)
Q Consensus 115 gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~ 194 (264)
.|+.+..-++++||||+|||.++..++..+ +...+.++.. ......+| .+ +..+..+-...
T Consensus 506 ~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~~f~~v~~~----~l~s~~vG-----------es-e~~vr~lF~~A 566 (806)
T 3cf2_A 506 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGP----ELLTMWFG-----------ES-EANVREIFDKA 566 (806)
T ss_dssp SCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TCEEEECCHH----HHHTTTCS-----------SC-HHHHHHHHHHH
T ss_pred cCCCCCceEEEecCCCCCchHHHHHHHHHh---CCceEEeccc----hhhccccc-----------hH-HHHHHHHHHHH
Confidence 567777779999999999999999988754 4333333211 11111111 11 33333333333
Q ss_pred hcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEccc
Q 024705 195 KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQV 256 (264)
Q Consensus 195 ~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~ 256 (264)
+...+.+++||.+..+.+...... ....+...+.++++|..+-..-...++.||..++.
T Consensus 567 r~~~P~IifiDEiDsl~~~R~~~~---~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~ 625 (806)
T 3cf2_A 567 RQAAPCVLFFDELDSIAKARGGNI---GDGGGAADRVINQILTEMDGMSTKKNVFIIGATNR 625 (806)
T ss_dssp HTTCSEEEECSCGGGCC-----------------CHHHHHHHHHHHSSCSSSSEEEECC-CC
T ss_pred HHcCCceeechhhhHHhhccCCCC---CCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCC
Confidence 456789999999999985321110 01112334556677777754434456667655543
No 192
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.83 E-value=5.9e-05 Score=74.15 Aligned_cols=26 Identities=31% Similarity=0.589 Sum_probs=23.1
Q ss_pred CCCCcEEEEEecCCCChHHHHHH-HHH
Q 024705 117 LPKGRIVEIYGREASGKTTLALH-VIK 142 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~-l~~ 142 (264)
+++|+++.|+|+||||||||+.. ++.
T Consensus 520 i~~Geiv~I~G~nGSGKSTLl~~~L~g 546 (842)
T 2vf7_A 520 FPLGVMTSVTGVSGSGKSTLVSQALVD 546 (842)
T ss_dssp EESSSEEEEECCTTSSHHHHCCCCCHH
T ss_pred EcCCCEEEEEcCCCcCHHHHHHHHHHH
Confidence 78999999999999999999886 443
No 193
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.82 E-value=1.7e-05 Score=72.67 Aligned_cols=55 Identities=18% Similarity=0.224 Sum_probs=42.1
Q ss_pred CccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecC
Q 024705 99 PVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (264)
Q Consensus 99 ~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e 157 (264)
..+.||...||.++. +.+|+.+.|.||||||||||+..++..... ...++.+..+
T Consensus 139 ~~~~tg~~vld~vl~---i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~-~~G~i~~~G~ 193 (438)
T 2dpy_A 139 HVLDTGVRAINALLT---VGRGQRMGLFAGSGVGKSVLLGMMARYTRA-DVIVVGLIGE 193 (438)
T ss_dssp SBCCCSCHHHHHHSC---CBTTCEEEEEECTTSSHHHHHHHHHHHSCC-SEEEEEEESC
T ss_pred eecCCCceEEeeeEE---ecCCCEEEEECCCCCCHHHHHHHHhcccCC-CeEEEEEece
Confidence 455678999999965 999999999999999999997777776543 3334445443
No 194
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.82 E-value=2.6e-05 Score=63.36 Aligned_cols=51 Identities=29% Similarity=0.371 Sum_probs=35.1
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH--HHHHHcCCCcc
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEAMGIDAE 173 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~--~~~~~~g~~~~ 173 (264)
++|.+++|.|||||||||++..++... | .++++.+..... ......|+.++
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~---g--~~~i~~d~~~~~~~~~~~~~g~~~~ 79 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET---G--LEFAEADAFHSPENIATMQRGIPLT 79 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH---C--CEEEEGGGGSCHHHHHHHHTTCCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh---C--CeEEcccccccHHHHHHHhcCCCCC
Confidence 579999999999999999999988765 3 456666554333 22234565544
No 195
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.80 E-value=2e-05 Score=63.09 Aligned_cols=48 Identities=33% Similarity=0.301 Sum_probs=36.6
Q ss_pred HHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecC
Q 024705 107 KLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (264)
Q Consensus 107 ~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e 157 (264)
.||+-.. ..+|.++.|.|++||||||++..++..+...|.++.+++.+
T Consensus 3 ~~~~~~~---~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 3 ALTTYKC---IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp -----CC---CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred ccccccc---cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 3555333 35789999999999999999999999888788888888754
No 196
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=97.80 E-value=0.00013 Score=67.18 Aligned_cols=114 Identities=20% Similarity=0.336 Sum_probs=71.4
Q ss_pred CCCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH--HHHHH---cC
Q 024705 95 SRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEA---MG 169 (264)
Q Consensus 95 ~~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~--~~~~~---~g 169 (264)
....+.+.||+..+|.++. +-+|+-.+|.|++|+|||++++..+.+....+..|+|....+.... ...+. -|
T Consensus 140 ~~v~epl~TGikaID~l~P---igrGQR~~Ifg~~g~GKT~l~l~~I~n~~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g 216 (513)
T 3oaa_A 140 QSVDQPVQTGYKAVDSMIP---IGRGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTISNVVRKLEEHG 216 (513)
T ss_dssp CCCCCBCCCSCHHHHHHSC---CBTTCBCEEEESSSSSHHHHHHHHHHTTSSSSCEEEEEEESCCHHHHHHHHHHHHHHS
T ss_pred CCcCcccccceeeeccccc---cccCCEEEeecCCCCCcchHHHHHHHhhccCCceEEEEEecCChHHHHHHHHHHhhcC
Confidence 4557899999999999986 7799999999999999999987666655455556778765554433 12222 23
Q ss_pred CCccceeEeC-C-CCH-HHHH------HHHHHHhhcCCccEEEEcCccccc
Q 024705 170 IDAENLLIAQ-P-DSA-ENLL------SVVDTLTKSGSIDVIVVDSVAALI 211 (264)
Q Consensus 170 ~~~~~l~~~~-~-~~~-ee~~------~~i~~~~~~~~~~~vvIDsl~~~~ 211 (264)
.-...+.+.. . .++ ..+. .+.+.....++--++++|+++.+.
T Consensus 217 ~m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A 267 (513)
T 3oaa_A 217 ALANTIVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSKQA 267 (513)
T ss_dssp CSTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChHHHH
Confidence 2222222222 2 222 2211 222333344556678999998654
No 197
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.79 E-value=1.2e-05 Score=65.69 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=23.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
-+++|+++.|.||||||||||+..++...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 37899999999999999999998887754
No 198
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.79 E-value=0.00015 Score=63.42 Aligned_cols=25 Identities=20% Similarity=0.318 Sum_probs=21.6
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHH
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIK 142 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~ 142 (264)
+.+| +++|+||||+||||++..+..
T Consensus 22 ~~~g-~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 22 FSDR-VTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp CCSS-EEEEECCTTTCSTHHHHHHHH
T ss_pred cCCC-cEEEECCCCCcHHHHHHHHHH
Confidence 4466 999999999999999888874
No 199
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=97.77 E-value=0.00014 Score=67.21 Aligned_cols=114 Identities=19% Similarity=0.320 Sum_probs=70.1
Q ss_pred CCCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhh--------cCCeEEEEecCCCCCH--HH
Q 024705 95 SRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK--------LGGYCAYLDVENALDP--SL 164 (264)
Q Consensus 95 ~~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~--------~g~~v~~~~~e~~~~~--~~ 164 (264)
....+.+.||+..+|.++. +-+|+-.+|.|++|+|||++++..+.+... .+..|+|....+.... ..
T Consensus 140 ~~v~epl~TGiraID~l~P---igrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~ 216 (510)
T 2ck3_A 140 ISVREPMQTGIKAVDSLVP---IGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQL 216 (510)
T ss_dssp CCCCSBCCCSCHHHHHHSC---CBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHH
T ss_pred cccCccccccceeeccccc---cccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHH
Confidence 3456789999999999986 789999999999999999997655554444 4456788776554443 11
Q ss_pred HH---HcCCCccceeEeC-C-CCH-HHHH------HHHHHHhhcCCccEEEEcCccccc
Q 024705 165 AE---AMGIDAENLLIAQ-P-DSA-ENLL------SVVDTLTKSGSIDVIVVDSVAALI 211 (264)
Q Consensus 165 ~~---~~g~~~~~l~~~~-~-~~~-ee~~------~~i~~~~~~~~~~~vvIDsl~~~~ 211 (264)
.+ .-|.-...+.+.. . .++ ..+. .+.+.....++--++++|+++.+.
T Consensus 217 ~~~~~~~g~m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A 275 (510)
T 2ck3_A 217 VKRLTDADAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQA 275 (510)
T ss_dssp HHHHHHTTCGGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHH
T ss_pred HHHHHhcCCcccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHHHH
Confidence 11 1122222222222 2 222 2221 223333444555678999998665
No 200
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=97.77 E-value=9.8e-05 Score=68.10 Aligned_cols=114 Identities=15% Similarity=0.233 Sum_probs=71.2
Q ss_pred CCCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH--HHH---HHcC
Q 024705 95 SRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLA---EAMG 169 (264)
Q Consensus 95 ~~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~--~~~---~~~g 169 (264)
....+.+.||+..+|.++. +-+|+-.+|.|++|+|||++++..+.+....+..++|....+.... ... ..-|
T Consensus 140 ~~v~epl~TGiraID~l~P---igrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g 216 (502)
T 2qe7_A 140 KSVHEPLQTGIKAIDSMIP---IGRGQRELIIGDRQTGKTTIAIDTIINQKGQDVICIYVAIGQKQSTVAGVVETLRQHD 216 (502)
T ss_dssp CCCCSBCCCSCHHHHHSSC---CBTTCBCEEEECSSSCHHHHHHHHHHGGGSCSEEEEEEEESCCHHHHHHHHHHHHHTT
T ss_pred cCCCCccccceeecccccc---cccCCEEEEECCCCCCchHHHHHHHHHhhcCCcEEEEEECCCcchHHHHHHHHHhhCC
Confidence 4457889999999999986 7899999999999999999977666665555556677766554433 111 1122
Q ss_pred CCccceeEeC-CC-C-HHHH------HHHHHHHhhcCCccEEEEcCccccc
Q 024705 170 IDAENLLIAQ-PD-S-AENL------LSVVDTLTKSGSIDVIVVDSVAALI 211 (264)
Q Consensus 170 ~~~~~l~~~~-~~-~-~ee~------~~~i~~~~~~~~~~~vvIDsl~~~~ 211 (264)
.-...+.+.. .+ + ...+ ....+.....++--++++|+++.+.
T Consensus 217 ~m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr~A 267 (502)
T 2qe7_A 217 ALDYTIVVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSKQA 267 (502)
T ss_dssp CSTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHH
T ss_pred CcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHHHH
Confidence 2222222222 22 2 2222 1223333444555678999998654
No 201
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.76 E-value=2.8e-05 Score=67.99 Aligned_cols=43 Identities=19% Similarity=0.138 Sum_probs=35.0
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhc-C-CeEEEEecCCC
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKL-G-GYCAYLDVENA 159 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~-g-~~v~~~~~e~~ 159 (264)
+++|.++.|.||||||||||+..++....+. | ..+.|+..+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 6889999999999999999999888877654 2 35778876654
No 202
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.76 E-value=3.2e-05 Score=63.32 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=22.7
Q ss_pred cEEEEEecCCCChHHHHHHHHHHHhh
Q 024705 121 RIVEIYGREASGKTTLALHVIKEAQK 146 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~~~~~ 146 (264)
..++|+||+|+||||++..++.....
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 48999999999999999999887653
No 203
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.76 E-value=0.0001 Score=68.74 Aligned_cols=42 Identities=26% Similarity=0.180 Sum_probs=32.8
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP 162 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~ 162 (264)
++...++|+||||+|||+++..++..+ +..+++++.......
T Consensus 75 ~~~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s~~~~~ 116 (516)
T 1sxj_A 75 GVFRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASDVRSK 116 (516)
T ss_dssp TSCSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTSCCCH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCCCcchH
Confidence 355789999999999999999998865 667777776554443
No 204
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.75 E-value=1.7e-05 Score=64.22 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=23.7
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHH
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~ 143 (264)
+.+|++++|.|||||||||++..++..
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhh
Confidence 457999999999999999999888775
No 205
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=97.75 E-value=9e-05 Score=68.44 Aligned_cols=114 Identities=19% Similarity=0.336 Sum_probs=70.7
Q ss_pred CCCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH--HHHHH---cC
Q 024705 95 SRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP--SLAEA---MG 169 (264)
Q Consensus 95 ~~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~--~~~~~---~g 169 (264)
....+.+.||+..+|.++. +-+|+-.+|.|++|+|||++++..+.+....+..|+|....+.... ...+. -|
T Consensus 153 ~~v~epl~TGiraID~l~P---igrGQR~~I~g~~g~GKT~Lal~~I~~~~~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g 229 (515)
T 2r9v_A 153 KPVDTPLQTGIKAIDSMIP---IGRGQRELIIGDRQTGKTAIAIDTIINQKGQGVYCIYVAIGQKKSAIARIIDKLRQYG 229 (515)
T ss_dssp CCCCSEECCSCHHHHHHSC---EETTCBEEEEEETTSSHHHHHHHHHHTTTTTTEEEEEEEESCCHHHHHHHHHHHHHTT
T ss_pred cCCCcchhcCccccccccc---cccCCEEEEEcCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCcHHHHHHHHHHHhCC
Confidence 3456789999999999986 7899999999999999999977666665555556777766554443 11111 12
Q ss_pred CCccceeEeC-C-CCH-HHHH------HHHHHHhhcCCccEEEEcCccccc
Q 024705 170 IDAENLLIAQ-P-DSA-ENLL------SVVDTLTKSGSIDVIVVDSVAALI 211 (264)
Q Consensus 170 ~~~~~l~~~~-~-~~~-ee~~------~~i~~~~~~~~~~~vvIDsl~~~~ 211 (264)
.-...+.+.. . .++ ..+. .+.+.....++--++++|+++.+.
T Consensus 230 ~m~rtvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr~A 280 (515)
T 2r9v_A 230 AMEYTTVVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSKHA 280 (515)
T ss_dssp GGGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHH
T ss_pred CcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHHHH
Confidence 1112222222 2 122 2221 223333444555678999998654
No 206
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.74 E-value=1.8e-05 Score=63.34 Aligned_cols=29 Identities=14% Similarity=0.299 Sum_probs=24.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
|..+|++++|+||||||||||+..++...
T Consensus 1 ~~~~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 1 GSHMRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45679999999999999999999888754
No 207
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.74 E-value=7.5e-05 Score=64.67 Aligned_cols=42 Identities=17% Similarity=0.309 Sum_probs=37.9
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL 160 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~ 160 (264)
++.++.|+|..|+||||++.+++..++..|.+|+++|.+...
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 81 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKH 81 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSC
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 567888889999999999999999999999999999998643
No 208
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.73 E-value=5.1e-05 Score=62.03 Aligned_cols=124 Identities=19% Similarity=0.174 Sum_probs=60.7
Q ss_pred cEEEEEecCCCChHHHHHHHHHHHh-----hcCCeEEE-EecCCCCCHHHHHHcCCCccce-eEeCC-CCHHHHHHHHHH
Q 024705 121 RIVEIYGREASGKTTLALHVIKEAQ-----KLGGYCAY-LDVENALDPSLAEAMGIDAENL-LIAQP-DSAENLLSVVDT 192 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~~~~-----~~g~~v~~-~~~e~~~~~~~~~~~g~~~~~l-~~~~~-~~~ee~~~~i~~ 192 (264)
-++++.|+||+|||+++..++.... ..|.+.+| ...++-...... ... ...++ ..... ...+...+.+.
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~-~~~-~k~~~~~~~~~~~~~~~~~~~~~- 82 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTY-IET-DAKKLPKSTDEQLSAHDMYEWIK- 82 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEE-EEC-CTTTCSSCCSSCEEGGGHHHHTT-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccc-cch-hhhhccccCcccccHHHHHHHhh-
Confidence 4789999999999999988766554 44524444 433321110000 000 00000 00000 01122221110
Q ss_pred HhhcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhh
Q 024705 193 LTKSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLL 261 (264)
Q Consensus 193 ~~~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~ 261 (264)
...+...+++||+.+.+.+......+ . .+.+..+. .-+..+..||+++|..+.+.
T Consensus 83 -~~~~~~~vliIDEAq~l~~~~~~~~e--~----------~rll~~l~-~~r~~~~~iil~tq~~~~l~ 137 (199)
T 2r2a_A 83 -KPENIGSIVIVDEAQDVWPARSAGSK--I----------PENVQWLN-THRHQGIDIFVLTQGPKLLD 137 (199)
T ss_dssp -SGGGTTCEEEETTGGGTSBCCCTTCC--C----------CHHHHGGG-GTTTTTCEEEEEESCGGGBC
T ss_pred -ccccCceEEEEEChhhhccCccccch--h----------HHHHHHHH-hcCcCCeEEEEECCCHHHHh
Confidence 12345779999999998742111011 0 12333332 11456889999999865543
No 209
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=97.73 E-value=0.00023 Score=65.36 Aligned_cols=64 Identities=28% Similarity=0.474 Sum_probs=51.8
Q ss_pred CCCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhc-CCeEEEEecCCCCC
Q 024705 95 SRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVENALD 161 (264)
Q Consensus 95 ~~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~-g~~v~~~~~e~~~~ 161 (264)
....+.+.||+..+|.++. +-+|+-..|.|++|+|||+|+..++.+.++. +.-++|....+...
T Consensus 131 ~~~~e~l~TGir~ID~l~p---igkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~iGER~r 195 (482)
T 2ck3_D 131 SVEQEILVTGIKVVDLLAP---YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTR 195 (482)
T ss_dssp CCCCCEECCSCHHHHHHSC---EETTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEESCCHH
T ss_pred cccCcCCccceEEEecccc---cccCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEECCCcch
Confidence 3456899999999999986 8899999999999999999999999987543 45666765554433
No 210
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=97.73 E-value=0.0003 Score=64.79 Aligned_cols=65 Identities=22% Similarity=0.373 Sum_probs=52.7
Q ss_pred CCCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhc-CCeEEEEecCCCCCH
Q 024705 95 SRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVENALDP 162 (264)
Q Consensus 95 ~~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~-g~~v~~~~~e~~~~~ 162 (264)
....+.+.||+..+|.++. +-+|+-+.|.|++|+|||+|+..++.+.+.. +..++|....+....
T Consensus 143 ~~~~e~l~TGirvID~l~p---igkGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~iGER~rE 208 (498)
T 1fx0_B 143 DTKLSIFETGIKVVNLLAP---YRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTRE 208 (498)
T ss_dssp CCCCCCCCCSCTTHHHHSC---CCTTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEEESCCSHH
T ss_pred cccccccccceeEeeeecc---cccCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEEcccCcHH
Confidence 3457889999999999986 8899999999999999999999999987543 456777765554443
No 211
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.72 E-value=8e-05 Score=69.20 Aligned_cols=73 Identities=23% Similarity=0.176 Sum_probs=44.7
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~ 195 (264)
-+++| ++|+||||+|||||+..++..+ +.+.++++...-... . .......+..+..
T Consensus 62 ~ip~G--vLL~GppGtGKTtLaraIa~~~---~~~~i~i~g~~~~~~------------------~-~g~~~~~v~~lfq 117 (499)
T 2dhr_A 62 RIPKG--VLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVEM------------------F-VGVGAARVRDLFE 117 (499)
T ss_dssp CCCSE--EEEECSSSSSHHHHHHHHHHHT---TCCEEEEEGGGGTSS------------------C-TTHHHHHHHHHTT
T ss_pred CCCce--EEEECCCCCCHHHHHHHHHHHh---CCCEEEEehhHHHHh------------------h-hhhHHHHHHHHHH
Confidence 34556 9999999999999999988764 355666664321100 0 0111122333322
Q ss_pred ---cCCccEEEEcCcccccc
Q 024705 196 ---SGSIDVIVVDSVAALIP 212 (264)
Q Consensus 196 ---~~~~~~vvIDsl~~~~~ 212 (264)
...+.+++||.+..+..
T Consensus 118 ~a~~~~p~il~IDEId~l~~ 137 (499)
T 2dhr_A 118 TAKRHAPCIVFIDEIDAVGR 137 (499)
T ss_dssp TSSSSSSCEEEEECGGGTCC
T ss_pred HHHhcCCCEEEEehHHHHHH
Confidence 23468999999988763
No 212
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.72 E-value=0.00026 Score=61.98 Aligned_cols=96 Identities=16% Similarity=0.069 Sum_probs=56.8
Q ss_pred HHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhc-------CCeEEEEecCCCCCH-----HHHHHc-CCCccc
Q 024705 108 LDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL-------GGYCAYLDVENALDP-----SLAEAM-GIDAEN 174 (264)
Q Consensus 108 LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~-------g~~v~~~~~e~~~~~-----~~~~~~-g~~~~~ 174 (264)
|...+. +| ++..++|+||||+|||+++..++..+... .-.++++++...... .+.+.+ |..
T Consensus 36 L~~~i~-~~--~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~--- 109 (318)
T 3te6_A 36 IYDSLM-SS--QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKEN--- 109 (318)
T ss_dssp HHHHHH-TT--CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC---
T ss_pred HHHHhc-CC--CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCC---
Confidence 445555 33 56778999999999999999999888642 235667776554333 223333 321
Q ss_pred eeEeCCCCHHHHHHHHHHHh-hcCCccEEEEcCccccc
Q 024705 175 LLIAQPDSAENLLSVVDTLT-KSGSIDVIVVDSVAALI 211 (264)
Q Consensus 175 l~~~~~~~~ee~~~~i~~~~-~~~~~~~vvIDsl~~~~ 211 (264)
. ......+.+...+.... ....+-++++|.+..+.
T Consensus 110 ~--~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~ 145 (318)
T 3te6_A 110 L--CGDISLEALNFYITNVPKAKKRKTLILIQNPENLL 145 (318)
T ss_dssp ----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC
T ss_pred C--CchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh
Confidence 1 11223333333344321 23567799999988776
No 213
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.71 E-value=3.4e-05 Score=62.90 Aligned_cols=38 Identities=37% Similarity=0.475 Sum_probs=30.2
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCC
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN 158 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~ 158 (264)
++|.++.|.||+||||||++..++....+ .+.|++.+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~ 41 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDH 41 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCc
Confidence 57899999999999999999888876532 477777654
No 214
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.70 E-value=0.00013 Score=64.08 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=22.7
Q ss_pred EEEEecCCCChHHHHHHHHHHHhhcC
Q 024705 123 VEIYGREASGKTTLALHVIKEAQKLG 148 (264)
Q Consensus 123 ~~I~G~~GsGKTtl~~~l~~~~~~~g 148 (264)
++|+||||+||||++..++..+...+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~ 74 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKN 74 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 89999999999999999998875433
No 215
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.70 E-value=0.00018 Score=62.99 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=36.4
Q ss_pred cEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC
Q 024705 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~ 159 (264)
.+++..|..|+||||++.+++..++..|.+|++++.|..
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~ 53 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPA 53 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 788888999999999999999999999999999999874
No 216
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.69 E-value=0.00045 Score=60.42 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=27.4
Q ss_pred HHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHh
Q 024705 106 LKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 106 ~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
..|...+. .|-.+. ++|+||||+||||++..++..+.
T Consensus 47 ~~l~~~l~-~~~~~~--~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 47 TVLKKTLK-SANLPH--MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HHHHHHTT-CTTCCC--EEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHh-cCCCCE--EEEECCCCCCHHHHHHHHHHHhC
Confidence 44555555 332222 89999999999999999998764
No 217
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.67 E-value=6.7e-05 Score=63.77 Aligned_cols=79 Identities=19% Similarity=0.239 Sum_probs=46.0
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK 195 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~ 195 (264)
+..+...++|+||||+|||+++..++... +.+.+++..... .+|.... .....+...+... .
T Consensus 60 ~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~~~~~-------~~g~~~~-------~~~~~~~~~~~~~-~ 121 (272)
T 1d2n_A 60 DRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKICSPDK-------MIGFSET-------AKCQAMKKIFDDA-Y 121 (272)
T ss_dssp SSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEECGGG-------CTTCCHH-------HHHHHHHHHHHHH-H
T ss_pred CCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeCHHH-------hcCCchH-------HHHHHHHHHHHHH-H
Confidence 34566789999999999999999998863 445555542110 0111000 0001112222222 2
Q ss_pred cCCccEEEEcCcccccc
Q 024705 196 SGSIDVIVVDSVAALIP 212 (264)
Q Consensus 196 ~~~~~~vvIDsl~~~~~ 212 (264)
..+..+++||.+..+..
T Consensus 122 ~~~~~vl~iDEid~l~~ 138 (272)
T 1d2n_A 122 KSQLSCVVVDDIERLLD 138 (272)
T ss_dssp TSSEEEEEECCHHHHTT
T ss_pred hcCCcEEEEEChhhhhc
Confidence 35688999999998864
No 218
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.67 E-value=2.5e-05 Score=64.81 Aligned_cols=30 Identities=17% Similarity=0.358 Sum_probs=24.3
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHh
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
-+++|++++|.||||||||||+..++....
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 578999999999999999999888877553
No 219
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.66 E-value=5.7e-05 Score=65.79 Aligned_cols=43 Identities=30% Similarity=0.410 Sum_probs=34.1
Q ss_pred HHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 106 LKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 106 ~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
+.|+.+.- .+++|+++.|+||||||||||+..++... .|.++.
T Consensus 114 ~vL~~vsl--~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~~ 156 (305)
T 2v9p_A 114 NALKLWLK--GIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVLS 156 (305)
T ss_dssp HHHHHHHH--TCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEEC
T ss_pred hhhccceE--EecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEEE
Confidence 34555543 79999999999999999999999988876 455543
No 220
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.66 E-value=7.1e-05 Score=63.90 Aligned_cols=35 Identities=37% Similarity=0.382 Sum_probs=26.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEe
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~ 155 (264)
-+++| ++|+||||+||||++..++.... ...++++
T Consensus 71 ~~~~g--vll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~ 105 (278)
T 1iy2_A 71 RIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITAS 105 (278)
T ss_dssp CCCCE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEE
T ss_pred CCCCe--EEEECCCcChHHHHHHHHHHHcC---CCEEEec
Confidence 34556 89999999999999998887542 3445554
No 221
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.65 E-value=2.3e-05 Score=64.80 Aligned_cols=29 Identities=24% Similarity=0.261 Sum_probs=24.0
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
-+++|++++|.||||||||||+..++...
T Consensus 19 ~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 19 SMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ---CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 36789999999999999999998888755
No 222
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.65 E-value=0.00069 Score=67.19 Aligned_cols=47 Identities=9% Similarity=0.170 Sum_probs=32.4
Q ss_pred CccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhh
Q 024705 198 SIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLL 261 (264)
Q Consensus 198 ~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~ 261 (264)
+++++++|..+.-+. ....+.+.+.|+++ .+.|.|||+|+|..+.+.
T Consensus 826 ~p~LLILDEPTsGLD-------------~~~~~~L~~lL~~L----~~~G~TVIvI~HdL~~i~ 872 (916)
T 3pih_A 826 GRTLYILDEPTVGLH-------------FEDVRKLVEVLHRL----VDRGNTVIVIEHNLDVIK 872 (916)
T ss_dssp SSEEEEEESTTTTCC-------------HHHHHHHHHHHHHH----HHTTCEEEEECCCHHHHT
T ss_pred CCCEEEEECCCCCCC-------------HHHHHHHHHHHHHH----HhcCCEEEEEeCCHHHHH
Confidence 467999997766542 23444455666665 456999999999987664
No 223
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.64 E-value=0.00018 Score=64.25 Aligned_cols=89 Identities=19% Similarity=0.207 Sum_probs=57.7
Q ss_pred CCcEEEE--EecCCCChHHHHHHHHHHHhhc------CCeEEEEecCCCCCH-----HHHHHcCCCccceeEeCCCCHHH
Q 024705 119 KGRIVEI--YGREASGKTTLALHVIKEAQKL------GGYCAYLDVENALDP-----SLAEAMGIDAENLLIAQPDSAEN 185 (264)
Q Consensus 119 ~G~~~~I--~G~~GsGKTtl~~~l~~~~~~~------g~~v~~~~~e~~~~~-----~~~~~~g~~~~~l~~~~~~~~ee 185 (264)
.+..++| +||+|+|||+++..++..+... +..++|++....... .....+|..... ...+..+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~~~~ 124 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQV----RGAPALD 124 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCC----TTCCHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCC----CCCCHHH
Confidence 4567888 9999999999999998877543 556888886433332 223445543211 1223455
Q ss_pred HHHHHHHHhh-cCCccEEEEcCccccc
Q 024705 186 LLSVVDTLTK-SGSIDVIVVDSVAALI 211 (264)
Q Consensus 186 ~~~~i~~~~~-~~~~~~vvIDsl~~~~ 211 (264)
+...+...+. ..++-+++||.+..+.
T Consensus 125 ~~~~l~~~l~~~~~~~llvlDe~~~l~ 151 (412)
T 1w5s_A 125 ILKALVDNLYVENHYLLVILDEFQSML 151 (412)
T ss_dssp HHHHHHHHHHHHTCEEEEEEESTHHHH
T ss_pred HHHHHHHHHHhcCCeEEEEEeCHHHHh
Confidence 5555544443 3567899999999876
No 224
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.64 E-value=6.4e-06 Score=78.53 Aligned_cols=127 Identities=10% Similarity=0.092 Sum_probs=58.6
Q ss_pred EEEEecCCCChHHHHHHHHHHHhhc-CCeEEEEecC-----CCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhh-
Q 024705 123 VEIYGREASGKTTLALHVIKEAQKL-GGYCAYLDVE-----NALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTK- 195 (264)
Q Consensus 123 ~~I~G~~GsGKTtl~~~l~~~~~~~-g~~v~~~~~e-----~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~- 195 (264)
++|.||+|||||||+..++....+. .|.|.+...+ ......+...+|+.+++..+....++.+.+........
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~ 127 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAG 127 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHC
T ss_pred EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcC
Confidence 8899999999999998888764442 3333222111 00011223456776665544443344444433322211
Q ss_pred ----------------cCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccch
Q 024705 196 ----------------SGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKV 258 (264)
Q Consensus 196 ----------------~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~ 258 (264)
...++++++|....... ...+ ++....+.+...++++. .+..++++++++|..+
T Consensus 128 ~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~--~t~~-----LD~~~~~~i~~li~~~l--~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 128 EGMGISHELITLEISSRDVPDLTLIDLPGITRV--AVGN-----QPADIGYKIKTLIKKYI--QRQETISLVVVPSNVD 197 (608)
T ss_dssp SSSCCCSCCEEEEEEESSSCCEEEEECCC--------CC-----SSCSHHHHHHHHHHHHT--TSSSCCEEEEEESSSC
T ss_pred CccccchHHHHHHhcCCCCCceeEeeCCCcccc--ccCC-----CCHHHHHHHHHHHHHHH--hcCCCCceEEEeccch
Confidence 12467888887743221 0111 11122222334444432 1345788888888754
No 225
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.63 E-value=2.8e-05 Score=63.80 Aligned_cols=60 Identities=18% Similarity=0.208 Sum_probs=43.3
Q ss_pred CCccccccccccCCCCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 82 GKESMLSLKRFFGSRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
+.+.+..+..+.+-...+.+.- +..|..++. |+|+...++|+||||+||||++..++..+
T Consensus 23 ~~~~w~~I~~~l~yq~~~~~~f-~~~l~~~~~--~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 23 EGGDWRPIVQFLRYQQIEFITF-LGALKSFLK--GTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp SCCCSHHHHHHHHHTTCCHHHH-HHHHHHHHH--TCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCcCHHHH-HHHHHHHHh--cCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4445544444333234555555 667888887 79888889999999999999999998875
No 226
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.62 E-value=5.4e-05 Score=63.51 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=31.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhc-----CCeEEEEecCC
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKL-----GGYCAYLDVEN 158 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~-----g~~v~~~~~e~ 158 (264)
-+++|.++.|.||+||||||++..++...-.. ...+.|++.+.
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~ 68 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR 68 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc
Confidence 47789999999999999999999887755211 23466777653
No 227
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.61 E-value=0.00056 Score=59.39 Aligned_cols=78 Identities=15% Similarity=0.196 Sum_probs=48.5
Q ss_pred HHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHH
Q 024705 107 KLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENL 186 (264)
Q Consensus 107 ~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~ 186 (264)
.|-.++. .| .....+++.||||+|||+++..++..+ +..+++++.... ..+.+
T Consensus 37 ~l~~~l~-~~-~~~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~~----------------------~~~~i 89 (324)
T 3u61_B 37 TFKSITS-KG-KIPHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSDC----------------------KIDFV 89 (324)
T ss_dssp HHHHHHH-TT-CCCSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTTC----------------------CHHHH
T ss_pred HHHHHHH-cC-CCCeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEccccc----------------------CHHHH
Confidence 3444454 23 223578899999999999999987754 556777764321 12333
Q ss_pred HHHHHHHhhc----CCccEEEEcCccccc
Q 024705 187 LSVVDTLTKS----GSIDVIVVDSVAALI 211 (264)
Q Consensus 187 ~~~i~~~~~~----~~~~~vvIDsl~~~~ 211 (264)
...+...... ++.++++||.+..+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 90 RGPLTNFASAASFDGRQKVIVIDEFDRSG 118 (324)
T ss_dssp HTHHHHHHHBCCCSSCEEEEEEESCCCGG
T ss_pred HHHHHHHHhhcccCCCCeEEEEECCcccC
Confidence 3333332221 367899999998775
No 228
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.61 E-value=3.4e-05 Score=59.35 Aligned_cols=24 Identities=25% Similarity=0.079 Sum_probs=19.9
Q ss_pred CcEEEEEecCCCChHHHHHHHHHH
Q 024705 120 GRIVEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~ 143 (264)
+..++|+||+|+|||+++..+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 445999999999999998877653
No 229
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=97.61 E-value=0.00032 Score=60.79 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=36.6
Q ss_pred CCcEEEEEec-CCCChHHHHHHHHHHHhhcCCeEEEEecCCC
Q 024705 119 KGRIVEIYGR-EASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (264)
Q Consensus 119 ~G~~~~I~G~-~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~ 159 (264)
++.++.|+|+ +|+||||++.+++..++..|.+|++++.+..
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r 144 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR 144 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 4578888886 8999999999999999999999999999874
No 230
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=97.60 E-value=0.00028 Score=63.27 Aligned_cols=57 Identities=18% Similarity=0.112 Sum_probs=47.3
Q ss_pred CccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhc--CCeEEEEecCC
Q 024705 99 PVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL--GGYCAYLDVEN 158 (264)
Q Consensus 99 ~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~--g~~v~~~~~e~ 158 (264)
+.+.||+..+|.++. +-+|+-.+|.|++|+|||+++.+++.++... +-.|+|....+
T Consensus 157 e~~~tGiraID~l~P---igrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGE 215 (427)
T 3l0o_A 157 DPKIYSTRLIDLFAP---IGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDE 215 (427)
T ss_dssp STTCHHHHHHHHHSC---CBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSC
T ss_pred cchhccchhhhhccc---ccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEecc
Confidence 678999999999986 7799999999999999999999998887653 34566765444
No 231
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=97.60 E-value=0.00059 Score=60.40 Aligned_cols=54 Identities=17% Similarity=0.135 Sum_probs=43.5
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCC
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGID 171 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~ 171 (264)
+-+...++++.|..|+||||++.+++..++..|.+|++++.|.. ......+|..
T Consensus 22 ~~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~--~~l~~~l~~~ 75 (349)
T 3ug7_A 22 KKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA--HSLRDIFEQE 75 (349)
T ss_dssp SSCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT--CHHHHHHCSC
T ss_pred ccCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC--CCHHHHhCCC
Confidence 44556788888999999999999999999999999999999873 2444555543
No 232
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.59 E-value=5.6e-06 Score=81.37 Aligned_cols=125 Identities=18% Similarity=0.205 Sum_probs=64.2
Q ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHh
Q 024705 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (264)
Q Consensus 115 gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~ 194 (264)
-|+.++..++|+||||+|||+++..++..+ +...+.++...-... .+|-. ......++...+
T Consensus 506 ~~~~~~~~vLL~GppGtGKT~Lakala~~~---~~~~i~v~~~~l~~~----~~g~~--------~~~i~~~f~~a~--- 567 (806)
T 1ypw_A 506 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLTM----WFGES--------EANVREIFDKAR--- 567 (806)
T ss_dssp CCCCCCCCCCCBCCTTSSHHHHHHHHHHHH---TCCCCCCCCSSSTTC----CTTTS--------SHHHHHHHHHHH---
T ss_pred cCCCCCceeEEECCCCCCHHHHHHHHHHHh---CCCEEEEechHhhhh----hcCcc--------HHHHHHHHHHHH---
Confidence 467889999999999999999999999876 223333332111100 00000 001122233222
Q ss_pred hcCCccEEEEcCccccccccccCCCcCCCCcHHHHHHHHHHHHHHHHHHhccCcEEEEEcccchHhh
Q 024705 195 KSGSIDVIVVDSVAALIPKCEIGVPINGMYSDAQSRIMTQALRKIHYSLCQSHTLIIFLNQVKVLLL 261 (264)
Q Consensus 195 ~~~~~~~vvIDsl~~~~~~~~~~~~~~~~~~~~q~r~i~~~L~~l~~~l~~~g~tVi~i~h~~~~~~ 261 (264)
...+.++++|.+..+.... .+.. ....+...+.+...|..+.......++.||.+++..+.++
T Consensus 568 -~~~p~vl~iDEid~l~~~r--~~~~-~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ld 630 (806)
T 1ypw_A 568 -QAAPCVLFFDELDSIAKAR--GGNI-GDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID 630 (806)
T ss_dssp -HHCSBCCCCSSHHHHCCTT--TTCC-SHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGGGS
T ss_pred -hcCCeEEEEEChhhhhhhc--cCCC-CCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCcccCC
Confidence 2367899999999887421 1110 0011122333344444443222445778888877655544
No 233
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.58 E-value=4.2e-05 Score=61.88 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=24.2
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
+++|.+++|.|||||||||++..++...
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 5689999999999999999998887654
No 234
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=97.58 E-value=0.00026 Score=59.68 Aligned_cols=90 Identities=17% Similarity=0.297 Sum_probs=58.1
Q ss_pred CCcEEEEE-ecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCc--------------------cceeE
Q 024705 119 KGRIVEIY-GREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDA--------------------ENLLI 177 (264)
Q Consensus 119 ~G~~~~I~-G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~--------------------~~l~~ 177 (264)
++.++.++ +..|+||||++.+++..++..|.+|+++|.+.... ....+|... .++.+
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~--~~~~l~~~~~~~l~~~l~~~~~~~~i~~~~~l~v 82 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGN--ATSGLGVRAERGVYHLLQGEPLEGLVHPVDGFHL 82 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCH--HHHHTTCCCSCCHHHHHTTCCGGGTCEEETTEEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCCcC--HHHHhCCCCCCCHHHHHcCCCHHHHccccCCEEE
Confidence 34667776 56899999999999999999999999999986422 233344322 23444
Q ss_pred eCCC-CHHHH----H---HHHHHHhhcCCccEEEEcCcccc
Q 024705 178 AQPD-SAENL----L---SVVDTLTKSGSIDVIVVDSVAAL 210 (264)
Q Consensus 178 ~~~~-~~ee~----~---~~i~~~~~~~~~~~vvIDsl~~~ 210 (264)
.... ...+. . ..+...++...+++|+||.-..+
T Consensus 83 lp~~~~~~~~~~~l~~~~~~l~~~l~~~~yD~iiiD~pp~~ 123 (257)
T 1wcv_1 83 LPATPDLVGATVELAGAPTALREALRDEGYDLVLLDAPPSL 123 (257)
T ss_dssp ECCCTTHHHHHHHHTTCTTHHHHHCCCTTCSEEEEECCSSC
T ss_pred EeCChhHHHHHHHHhhHHHHHHHHhcccCCCEEEEeCCCCC
Confidence 4332 22211 1 33444443367899999986654
No 235
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.58 E-value=0.00033 Score=64.22 Aligned_cols=69 Identities=17% Similarity=0.214 Sum_probs=41.8
Q ss_pred cEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhcCCcc
Q 024705 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSID 200 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~~~~ 200 (264)
..++|+||||+||||++..++... +.....++...... ....+.+..........+..
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~---~~~f~~l~a~~~~~-------------------~~ir~~~~~a~~~~~~~~~~ 108 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYA---NADVERISAVTSGV-------------------KEIREAIERARQNRNAGRRT 108 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHT---TCEEEEEETTTCCH-------------------HHHHHHHHHHHHHHHTTCCE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHh---CCCeEEEEeccCCH-------------------HHHHHHHHHHHHhhhcCCCc
Confidence 469999999999999999988754 33444443211100 01122333333333345778
Q ss_pred EEEEcCccccc
Q 024705 201 VIVVDSVAALI 211 (264)
Q Consensus 201 ~vvIDsl~~~~ 211 (264)
+++||.+..+.
T Consensus 109 iLfIDEI~~l~ 119 (447)
T 3pvs_A 109 ILFVDEVHRFN 119 (447)
T ss_dssp EEEEETTTCC-
T ss_pred EEEEeChhhhC
Confidence 99999998775
No 236
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=97.57 E-value=0.00051 Score=60.53 Aligned_cols=48 Identities=21% Similarity=0.192 Sum_probs=40.2
Q ss_pred HHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCC
Q 024705 108 LDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN 158 (264)
Q Consensus 108 LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~ 158 (264)
|+.++. . ..-.++++.|..|+||||++.+++..++..|.+|++++.|.
T Consensus 7 l~~~l~-~--~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~ 54 (334)
T 3iqw_A 7 LQSILD-Q--RSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDP 54 (334)
T ss_dssp SHHHHH-C--TTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCS
T ss_pred HHHHhc-C--CCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 455554 2 22468889999999999999999999999999999999984
No 237
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.57 E-value=3.7e-05 Score=62.53 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=22.0
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
++|.+++|+||||||||||+..++...
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999999888765
No 238
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.57 E-value=5.8e-05 Score=59.64 Aligned_cols=38 Identities=26% Similarity=0.320 Sum_probs=29.5
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL 160 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~ 160 (264)
.+|.++.|.|+|||||||++..++... | ..+++.+...
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~---g--~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL---H--AAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH---T--CEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh---C--cEEEeCcccc
Confidence 468999999999999999999887754 3 4566665433
No 239
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=97.56 E-value=9.3e-05 Score=61.53 Aligned_cols=37 Identities=24% Similarity=0.198 Sum_probs=34.0
Q ss_pred EEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC
Q 024705 123 VEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (264)
Q Consensus 123 ~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~ 159 (264)
+.|.|..|+||||++.+++..++..|.+|+++|.+..
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 39 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD 39 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 4559999999999999999999999999999999885
No 240
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=97.56 E-value=0.00054 Score=61.16 Aligned_cols=39 Identities=23% Similarity=0.323 Sum_probs=34.4
Q ss_pred CCcEEEEEe-cCCCChHHHHHHHHHHHhhcCCeEEEEecC
Q 024705 119 KGRIVEIYG-REASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (264)
Q Consensus 119 ~G~~~~I~G-~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e 157 (264)
++.++.+++ ..|+||||++.+++..++..|.+|+++|.|
T Consensus 142 ~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 142 KSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp SCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 456677765 799999999999999999999999999988
No 241
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=97.55 E-value=9.8e-05 Score=68.19 Aligned_cols=65 Identities=22% Similarity=0.330 Sum_probs=51.5
Q ss_pred CCCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH
Q 024705 95 SRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP 162 (264)
Q Consensus 95 ~~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~ 162 (264)
....+.+.||+..+|.++. +-+|+-.+|.|++|+|||++++..+.+....+..++|....+....
T Consensus 141 ~~v~epl~TGiraID~l~P---igrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~E 205 (507)
T 1fx0_A 141 RSVYEPLQTGLIAIDAMIP---VGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASS 205 (507)
T ss_dssp CCCCSBCCCSCTTTTTTSC---CBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEEEESCCHHH
T ss_pred cccCCcccccceecccccc---cccCCEEEEecCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCchH
Confidence 3456789999999999986 7799999999999999999987666665555667788776554443
No 242
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.54 E-value=0.00049 Score=58.98 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=27.8
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecC
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e 157 (264)
+..++|+||||+|||+++..++... +.++++++..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~~ 84 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEAT 84 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcch
Confidence 4568899999999999999998866 4566677643
No 243
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.53 E-value=7.9e-05 Score=67.74 Aligned_cols=40 Identities=18% Similarity=0.137 Sum_probs=33.8
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecC
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e 157 (264)
.+|.+++|+||+||||||++..++....+..+.+.++...
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ 204 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP 204 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence 6889999999999999999999988776666777777643
No 244
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.53 E-value=0.00037 Score=60.07 Aligned_cols=81 Identities=15% Similarity=0.192 Sum_probs=48.0
Q ss_pred HHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcC--CeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHH
Q 024705 107 KLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLG--GYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAE 184 (264)
Q Consensus 107 ~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g--~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~e 184 (264)
.|...+. .|-.+. ++|+||+|+|||+++..++..+...+ ..+++++... ....+
T Consensus 32 ~l~~~l~-~~~~~~--~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~---------------------~~~~~ 87 (323)
T 1sxj_B 32 RLQQIAK-DGNMPH--MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD---------------------DRGID 87 (323)
T ss_dssp HHHHHHH-SCCCCC--EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS---------------------CCSHH
T ss_pred HHHHHHH-cCCCCe--EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc---------------------ccChH
Confidence 4555555 332222 89999999999999999998764322 2244443221 11233
Q ss_pred HHHHHHHHHhh------cCCccEEEEcCccccc
Q 024705 185 NLLSVVDTLTK------SGSIDVIVVDSVAALI 211 (264)
Q Consensus 185 e~~~~i~~~~~------~~~~~~vvIDsl~~~~ 211 (264)
.+...+..... .++..+++||.+..+.
T Consensus 88 ~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~ 120 (323)
T 1sxj_B 88 VVRNQIKHFAQKKLHLPPGKHKIVILDEADSMT 120 (323)
T ss_dssp HHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSC
T ss_pred HHHHHHHHHHhccccCCCCCceEEEEECcccCC
Confidence 44443433321 2347899999988765
No 245
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.53 E-value=0.00019 Score=60.66 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=32.2
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~ 159 (264)
+..++|+||+|+|||+++..++......+.+.++++....
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGS
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCC
Confidence 4568999999999999999998876655677888876544
No 246
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=97.52 E-value=0.00064 Score=58.00 Aligned_cols=42 Identities=17% Similarity=0.133 Sum_probs=36.9
Q ss_pred CCcEEEEEec-CCCChHHHHHHHHHHHhhcCCeEEEEecCCCC
Q 024705 119 KGRIVEIYGR-EASGKTTLALHVIKEAQKLGGYCAYLDVENAL 160 (264)
Q Consensus 119 ~G~~~~I~G~-~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~ 160 (264)
+..++.|+++ +|+||||++.+++..++..|.+|+++|.+...
T Consensus 81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~~ 123 (271)
T 3bfv_A 81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMRK 123 (271)
T ss_dssp CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSSS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 4567888876 89999999999999999999999999998754
No 247
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.51 E-value=0.00012 Score=67.12 Aligned_cols=58 Identities=24% Similarity=0.403 Sum_probs=47.7
Q ss_pred CCCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhh-cCCeEEEEe
Q 024705 95 SRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAYLD 155 (264)
Q Consensus 95 ~~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~-~g~~v~~~~ 155 (264)
....+.+.||+..+|.+.. +-+|+.+.|+|++|+|||||+..++.+... .+.-++|..
T Consensus 129 ~~~~e~l~TGir~ID~L~p---i~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~ 187 (473)
T 1sky_E 129 ATEVEILETGIKVVDLLAP---YIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAG 187 (473)
T ss_dssp CCSCCEECCSCHHHHHHSC---EETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEE
T ss_pred cccCccccccchHHHHHhh---hccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEEEee
Confidence 4567789999999999876 668999999999999999999999988764 345555554
No 248
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.49 E-value=8.1e-05 Score=59.50 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=25.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
|+.++.+++|.|+|||||||++..++...
T Consensus 1 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 1 GMQTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCSCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 56788999999999999999999988754
No 249
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.49 E-value=6.5e-05 Score=61.47 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=24.0
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
++|.+++|.|||||||||++..++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 579999999999999999999887754
No 250
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.49 E-value=8.9e-05 Score=60.65 Aligned_cols=40 Identities=28% Similarity=0.227 Sum_probs=33.6
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHh-hcCCeEEEEec
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQ-KLGGYCAYLDV 156 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~-~~g~~v~~~~~ 156 (264)
+++|.++.|.|++||||||++..++.... ..|.++.+++.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 57899999999999999999999988776 45666778764
No 251
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.48 E-value=0.00029 Score=68.74 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=46.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhcCCccE
Q 024705 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSIDV 201 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~~~~~ 201 (264)
.++|+||||+|||+++..++..+...+.+.++++...-.... ......+...+ ......+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~----------------~~~~~~l~~~~----~~~~~~v 582 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKH----------------STSGGQLTEKV----RRKPYSV 582 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSC----------------CCC---CHHHH----HHCSSSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccc----------------ccccchhhHHH----HhCCCeE
Confidence 699999999999999999999887777888888754322110 00011222222 2346789
Q ss_pred EEEcCccccc
Q 024705 202 IVVDSVAALI 211 (264)
Q Consensus 202 vvIDsl~~~~ 211 (264)
+++|.+..+.
T Consensus 583 l~lDEi~~~~ 592 (758)
T 3pxi_A 583 VLLDAIEKAH 592 (758)
T ss_dssp EEEECGGGSC
T ss_pred EEEeCccccC
Confidence 9999987664
No 252
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.46 E-value=0.00042 Score=61.43 Aligned_cols=41 Identities=24% Similarity=0.188 Sum_probs=35.4
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~ 159 (264)
+...+.|+|++|+||||++.+++..+...|.+|+.++.+..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~ 118 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPS 118 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCC
Confidence 45689999999999999999999998888999999988754
No 253
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.46 E-value=3.6e-05 Score=63.86 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=19.3
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHH-HHH
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVI-KEA 144 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~-~~~ 144 (264)
+++|++++|.|||||||||++..++ ...
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC---
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 5789999999999999999998888 653
No 254
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=97.46 E-value=0.0014 Score=54.73 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=33.4
Q ss_pred cEEEE-EecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC
Q 024705 121 RIVEI-YGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (264)
Q Consensus 121 ~~~~I-~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~ 159 (264)
.++.| .+..|+||||++.+++..++..|.+|++++.+..
T Consensus 3 ~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (260)
T 3q9l_A 3 RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIG 42 (260)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred eEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 44555 4569999999999999999999999999999873
No 255
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.44 E-value=0.00012 Score=62.07 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=31.9
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecC
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e 157 (264)
++.+++|.|+|||||||++..++..+...|..+++++.|
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D 41 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSD 41 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECch
Confidence 467899999999999999999998776667667666643
No 256
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=97.44 E-value=0.00086 Score=57.73 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=36.2
Q ss_pred CCcEEEEEec-CCCChHHHHHHHHHHHhhcCCeEEEEecCCCC
Q 024705 119 KGRIVEIYGR-EASGKTTLALHVIKEAQKLGGYCAYLDVENAL 160 (264)
Q Consensus 119 ~G~~~~I~G~-~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~ 160 (264)
++.++.|+++ +|+||||++.+++..++..|.+|+++|.+...
T Consensus 91 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~~ 133 (286)
T 3la6_A 91 QNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRK 133 (286)
T ss_dssp TCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTTT
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCCC
Confidence 4566767665 89999999999999999999999999998764
No 257
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.44 E-value=0.00049 Score=67.99 Aligned_cols=79 Identities=18% Similarity=0.247 Sum_probs=43.3
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHhh-------cCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHH-HHHHHH
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQK-------LGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAEN-LLSVVD 191 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~~-------~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee-~~~~i~ 191 (264)
...++|+||||+|||+++..++..+.. .+.++++++...... |... ....++ +...+.
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~-------g~~~-------~g~~~~~l~~~~~ 256 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA-------GAKY-------RGEFEERLKAVIQ 256 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------------------CHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-------cCcc-------chHHHHHHHHHHH
Confidence 345789999999999999999988754 356677766422110 0000 011222 223333
Q ss_pred HHhhcCCccEEEEcCcccccc
Q 024705 192 TLTKSGSIDVIVVDSVAALIP 212 (264)
Q Consensus 192 ~~~~~~~~~~vvIDsl~~~~~ 212 (264)
......++.+++||.+..+.+
T Consensus 257 ~~~~~~~~~iL~IDEi~~l~~ 277 (854)
T 1qvr_A 257 EVVQSQGEVILFIDELHTVVG 277 (854)
T ss_dssp HHHTTCSSEEEEECCC-----
T ss_pred HHHhcCCCeEEEEecHHHHhc
Confidence 333334677999999998874
No 258
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.43 E-value=6.1e-05 Score=60.42 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=22.5
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHh
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
|++++|.|||||||||++..++....
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 56899999999999999988887654
No 259
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.43 E-value=3.5e-05 Score=72.94 Aligned_cols=38 Identities=26% Similarity=0.261 Sum_probs=33.4
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEec
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~ 156 (264)
.+.+++|.|+||+||||++..++..+...+.++++...
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 35789999999999999999999988888888888764
No 260
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.43 E-value=0.00063 Score=59.93 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=22.1
Q ss_pred cEEEEEecCCCChHHHHHHHHHHHh
Q 024705 121 RIVEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
..++|+||+|+|||+++..++..+.
T Consensus 39 ~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp SEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988764
No 261
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.42 E-value=0.00038 Score=61.00 Aligned_cols=39 Identities=18% Similarity=0.121 Sum_probs=31.5
Q ss_pred cEEEEEecCCCChHHHHHHHHHHHhh--cCCeEEEEecCCC
Q 024705 121 RIVEIYGREASGKTTLALHVIKEAQK--LGGYCAYLDVENA 159 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~~~~~--~g~~v~~~~~e~~ 159 (264)
-++.|.||+||||||++..+...... .++.+.+++.+.-
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 48999999999999999888776652 3567888887764
No 262
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.42 E-value=0.00012 Score=58.64 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=21.0
Q ss_pred CcEEEEEecCCCChHHHHHHHHH
Q 024705 120 GRIVEIYGREASGKTTLALHVIK 142 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~ 142 (264)
|++++|.|||||||||++..++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 67899999999999999999875
No 263
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.41 E-value=0.00019 Score=62.49 Aligned_cols=87 Identities=14% Similarity=0.159 Sum_probs=52.5
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC------CH-H----HHHHcCC------------Ccccee
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL------DP-S----LAEAMGI------------DAENLL 176 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~------~~-~----~~~~~g~------------~~~~l~ 176 (264)
|.+++|.||+|+|||+|+..++... + ++|++..... .. . ..+.++- ......
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 105 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNER---P--GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLT 105 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHS---S--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGT
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHc---C--cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEeccee
Confidence 4799999999999999999988653 2 7888764321 11 1 1222211 000000
Q ss_pred E-eCCCCHHHHHHHHHHHhhcCCccEEEEcCccccc
Q 024705 177 I-AQPDSAENLLSVVDTLTKSGSIDVIVVDSVAALI 211 (264)
Q Consensus 177 ~-~~~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~ 211 (264)
. ....+..++...+.......++-+++||.++.+.
T Consensus 106 ~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~ 141 (350)
T 2qen_A 106 LEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLR 141 (350)
T ss_dssp SCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGG
T ss_pred eccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHh
Confidence 0 0123556666666655443347799999999876
No 264
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.41 E-value=0.0001 Score=59.68 Aligned_cols=29 Identities=21% Similarity=0.124 Sum_probs=24.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
.+++|.++.|.|+|||||||++..++..+
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35688999999999999999999998765
No 265
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.40 E-value=0.00042 Score=68.49 Aligned_cols=84 Identities=15% Similarity=0.180 Sum_probs=48.8
Q ss_pred cEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHH-HHHHcCCCccceeEeCCCCHHHHHHHHHHHhhcCCc
Q 024705 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPS-LAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSI 199 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~-~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~~~ 199 (264)
..++|+||||+|||+++..++......+...++++...-.... ..+-+|.++.-+- ......+...+ .....
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G---~~~~g~l~~~~----~~~~~ 661 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVG---YEEGGQLTEAV----RRRPY 661 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC-----------------CHHHHH----HHCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcC---ccccchHHHHH----HhCCC
Confidence 4789999999999999999999887667788888765433321 1111222211100 00011222222 23456
Q ss_pred cEEEEcCccccc
Q 024705 200 DVIVVDSVAALI 211 (264)
Q Consensus 200 ~~vvIDsl~~~~ 211 (264)
.++++|.+..+.
T Consensus 662 ~vl~lDEi~~l~ 673 (854)
T 1qvr_A 662 SVILFDEIEKAH 673 (854)
T ss_dssp EEEEESSGGGSC
T ss_pred eEEEEecccccC
Confidence 899999997654
No 266
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.38 E-value=0.0013 Score=57.30 Aligned_cols=64 Identities=19% Similarity=0.218 Sum_probs=41.8
Q ss_pred cEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhcCCcc
Q 024705 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSID 200 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~~~~ 200 (264)
..++|+||+|+|||+++..++... +...+.++.... ....++...+.. ..+..
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~---~~~~~~~~~~~~---------------------~~~~~~~~~~~~---~~~~~ 108 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEM---SANIKTTAAPMI---------------------EKSGDLAAILTN---LSEGD 108 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHT---TCCEEEEEGGGC---------------------CSHHHHHHHHHT---CCTTC
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh---CCCeEEecchhc---------------------cchhHHHHHHHh---ccCCC
Confidence 458999999999999999986643 445555543211 122333333322 24678
Q ss_pred EEEEcCccccc
Q 024705 201 VIVVDSVAALI 211 (264)
Q Consensus 201 ~vvIDsl~~~~ 211 (264)
+++||.+..+.
T Consensus 109 vl~lDEi~~l~ 119 (338)
T 3pfi_A 109 ILFIDEIHRLS 119 (338)
T ss_dssp EEEEETGGGCC
T ss_pred EEEEechhhcC
Confidence 99999998775
No 267
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=97.38 E-value=0.00037 Score=63.67 Aligned_cols=61 Identities=16% Similarity=0.240 Sum_probs=48.1
Q ss_pred CCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCC----eEEEEecCCC
Q 024705 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGG----YCAYLDVENA 159 (264)
Q Consensus 96 ~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~----~v~~~~~e~~ 159 (264)
...+.+.||+..+|.++. +-+|+-..|.|++|+|||+|+.+++..+...+. .++|....+.
T Consensus 130 ~~~e~l~TGiraID~l~p---igrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR 194 (465)
T 3vr4_D 130 YPDEFIQTGISAIDHLNT---LVRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGIT 194 (465)
T ss_dssp CCCCBCBCSCHHHHTTSC---CBTTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEEC
T ss_pred CcccccccCceEEecccc---cccCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCC
Confidence 456789999999999986 778999999999999999999888776654333 5666654443
No 268
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.37 E-value=0.00023 Score=59.27 Aligned_cols=39 Identities=23% Similarity=0.154 Sum_probs=32.4
Q ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEE
Q 024705 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYL 154 (264)
Q Consensus 115 gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~ 154 (264)
..+.+|.++.|.|++||||||++..++..... +..++..
T Consensus 21 ~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 21 QSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp CCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred eecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 35678999999999999999999999988766 6666543
No 269
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=97.36 E-value=0.001 Score=62.00 Aligned_cols=62 Identities=21% Similarity=0.179 Sum_probs=50.4
Q ss_pred CCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH
Q 024705 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP 162 (264)
Q Consensus 96 ~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~ 162 (264)
...+.+.||+..+|.++. +-+|+-.+|.|++|+|||+++.+++... ....++|....+....
T Consensus 206 ~~~epl~TGirvID~l~P---igkGqr~~I~g~~g~GKT~L~~~ia~~~--~~~~~V~~~iGER~~E 267 (588)
T 3mfy_A 206 PPEVPLITGQRVIDTFFP---QAKGGTAAIPGPAGSGKTVTQHQLAKWS--DAQVVIYIGCGERGNE 267 (588)
T ss_dssp CSCSEECCSCHHHHHHSC---EETTCEEEECSCCSHHHHHHHHHHHHHS--SCSEEEEEECCSSSSH
T ss_pred cCCcccccCcchhhccCC---cccCCeEEeecCCCCCHHHHHHHHHhcc--CCCEEEEEEecccHHH
Confidence 456889999999999986 7899999999999999999998876642 3456778776666554
No 270
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.36 E-value=0.00026 Score=56.52 Aligned_cols=41 Identities=17% Similarity=0.081 Sum_probs=32.1
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecC
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e 157 (264)
...-.++.|+|++|||||||+..++..+...+.++..+..+
T Consensus 3 ~~~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~ 43 (174)
T 1np6_A 3 KTMIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT 43 (174)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCcceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeC
Confidence 34456899999999999999999998877777777666543
No 271
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.35 E-value=0.00025 Score=56.39 Aligned_cols=85 Identities=20% Similarity=0.218 Sum_probs=50.0
Q ss_pred cEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC---------CHHHHHHcCCC------ccceeEeC---CCC
Q 024705 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL---------DPSLAEAMGID------AENLLIAQ---PDS 182 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~---------~~~~~~~~g~~------~~~l~~~~---~~~ 182 (264)
.++.|+|++||||||++..++..+...|.+|..+..+... +..+.+..|.+ .....+.. ...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~~~diD~~~g~D~~r~~~aGa~~v~~~s~~~~~~~~~~~~~~ 84 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGAVATAVEGDGLLQLHLRRPLWR 84 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--------------------CSEEEEEETTEEEEEECCSCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCCCcccccCCChhHHHHHhcCCCeEEeccCCEEEEEecccccc
Confidence 4688999999999999999999888888888888754321 12233333532 11222222 223
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCccc
Q 024705 183 AENLLSVVDTLTKSGSIDVIVVDSVAA 209 (264)
Q Consensus 183 ~ee~~~~i~~~~~~~~~~~vvIDsl~~ 209 (264)
.+.+...+... ++++++|+....
T Consensus 85 ~~~~~~ll~~~----~~D~vlVEg~~~ 107 (169)
T 1xjc_A 85 LDDVLALYAPL----RLDLVLVEGYKQ 107 (169)
T ss_dssp HHHHHHHHGGG----CCSEEEEECCTT
T ss_pred hHHHHHHHHhc----CCCEEEEeCCCC
Confidence 33443333322 789999988775
No 272
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.34 E-value=0.00023 Score=56.62 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=29.3
Q ss_pred EEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEe
Q 024705 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~ 155 (264)
++.|.|++||||||++..++..+...|..+.+++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 6899999999999999999988766666677775
No 273
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.34 E-value=0.00097 Score=62.00 Aligned_cols=30 Identities=20% Similarity=0.099 Sum_probs=25.5
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhh
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQK 146 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~ 146 (264)
+.++..++|+|++|||||+++..++..++.
T Consensus 164 L~~~pHlLIaG~TGSGKSt~L~~li~sLl~ 193 (512)
T 2ius_A 164 LAKMPHLLVAGTTGSGASVGVNAMILSMLY 193 (512)
T ss_dssp GGGSCSEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred cccCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456778999999999999999999887653
No 274
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=97.33 E-value=0.00033 Score=64.25 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=48.7
Q ss_pred CCCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhc----CCeEEEEecCCC
Q 024705 95 SRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL----GGYCAYLDVENA 159 (264)
Q Consensus 95 ~~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~----g~~v~~~~~e~~ 159 (264)
....+.+.||+..+|.++. +-+|+-..|.|++|+|||+|+.+++.....+ +..++|....+.
T Consensus 130 ~~~~e~l~TGir~ID~l~p---igrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER 195 (469)
T 2c61_A 130 LPPKDFIQTGISTIDGTNT---LVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGIT 195 (469)
T ss_dssp CCCCSBCBCSCHHHHTTSC---CBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEEC
T ss_pred cccccccceeeEeeeeeec---cccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCC
Confidence 3456789999999999986 7799999999999999999999888876532 235666654443
No 275
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.33 E-value=0.00086 Score=58.15 Aligned_cols=85 Identities=13% Similarity=0.075 Sum_probs=50.0
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHH-HHHHcCCCccceeEeCCCCHHHHHHHHHHHhhcC
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPS-LAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSG 197 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~-~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~ 197 (264)
.+..++|+||||+|||+++..+.......+.+.++++........ ..+-+|.....+.-.... ....+...
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~----~~g~~~~a---- 95 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADKR----REGRFVEA---- 95 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---CC----CCCHHHHH----
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhhh----hcCHHHhc----
Confidence 455699999999999999999888765667777778765443332 233345432211100000 00111111
Q ss_pred CccEEEEcCccccc
Q 024705 198 SIDVIVVDSVAALI 211 (264)
Q Consensus 198 ~~~~vvIDsl~~~~ 211 (264)
...+++||.+..+.
T Consensus 96 ~~g~L~LDEi~~l~ 109 (304)
T 1ojl_A 96 DGGTLFLDEIGDIS 109 (304)
T ss_dssp TTSEEEEESCTTCC
T ss_pred CCCEEEEeccccCC
Confidence 24689999998875
No 276
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.33 E-value=0.0002 Score=56.93 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=28.8
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEec
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~ 156 (264)
|.++.|.|++||||||++..++......|....+++.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~ 39 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSF 39 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEeh
Confidence 5789999999999999999998876555533455553
No 277
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.33 E-value=0.00094 Score=57.73 Aligned_cols=66 Identities=20% Similarity=0.238 Sum_probs=42.8
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhcCCc
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSI 199 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~~~ 199 (264)
...++|+||+|+|||+++..++... +.++.+++.... ....++...+... ..+.
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~---------------------~~~~~l~~~l~~~--~~~~ 91 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGPAI---------------------EKPGDLAAILANS--LEEG 91 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHH---TCCEEEECTTTC---------------------CSHHHHHHHHTTT--CCTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHh---CCCEEEEecccc---------------------CChHHHHHHHHHh--ccCC
Confidence 3568999999999999999998765 445555553221 1123333332220 2467
Q ss_pred cEEEEcCccccc
Q 024705 200 DVIVVDSVAALI 211 (264)
Q Consensus 200 ~~vvIDsl~~~~ 211 (264)
.+++||.+..+.
T Consensus 92 ~~l~lDEi~~l~ 103 (324)
T 1hqc_A 92 DILFIDEIHRLS 103 (324)
T ss_dssp CEEEETTTTSCC
T ss_pred CEEEEECCcccc
Confidence 799999998765
No 278
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.30 E-value=0.00014 Score=57.18 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=22.4
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
.|.++.|.|+|||||||++..++...
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999998887753
No 279
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.30 E-value=0.0008 Score=65.49 Aligned_cols=81 Identities=12% Similarity=0.149 Sum_probs=47.8
Q ss_pred cEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH-HHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhcCCc
Q 024705 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP-SLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKSGSI 199 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~-~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~~~~ 199 (264)
..++|+||||+|||+++..++..+ +...+.++..+-... ...+.+|.++. ....+-...+...+.....
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l---~~~~~~i~~s~~~~~~~~~~l~g~~~g-------~~g~~~~~~l~~~~~~~~~ 558 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYMERHTVSRLIGAPPG-------YVGFDQGGLLTDAVIKHPH 558 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH---TCEEEEEEGGGCSSSSCCSSSCCCCSC-------SHHHHHTTHHHHHHHHCSS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh---cCCEEEEechhhcchhhHhhhcCCCCC-------CcCccccchHHHHHHhCCC
Confidence 368999999999999999998876 567777775443222 11111232211 1111111112223334567
Q ss_pred cEEEEcCccccc
Q 024705 200 DVIVVDSVAALI 211 (264)
Q Consensus 200 ~~vvIDsl~~~~ 211 (264)
.++++|.+..+.
T Consensus 559 ~vl~lDEi~~~~ 570 (758)
T 1r6b_X 559 AVLLLDEIEKAH 570 (758)
T ss_dssp EEEEEETGGGSC
T ss_pred cEEEEeCccccC
Confidence 899999998765
No 280
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.29 E-value=0.00031 Score=62.00 Aligned_cols=43 Identities=16% Similarity=0.088 Sum_probs=38.0
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~ 159 (264)
..+|.++.|.|+||+||||++..++......++++.+++.+..
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 4678999999999999999999999988888999998887654
No 281
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=97.28 E-value=0.0015 Score=54.79 Aligned_cols=38 Identities=24% Similarity=0.328 Sum_probs=32.9
Q ss_pred EEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC
Q 024705 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~ 159 (264)
+.+..+..|+||||++.+++..++..|.+|+++|.+..
T Consensus 5 I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (263)
T 1hyq_A 5 ITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADIT 42 (263)
T ss_dssp EEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 34446779999999999999999999999999998864
No 282
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.28 E-value=0.00016 Score=58.80 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=25.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
-+.+|.+++|.|||||||||++..++...
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35789999999999999999999987754
No 283
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.27 E-value=0.002 Score=60.43 Aligned_cols=91 Identities=13% Similarity=0.120 Sum_probs=56.7
Q ss_pred CCcEEEEEecCCCChHHHHHHHHH----HHhhcCCeEEEEecCCCC--CH-----HHHHHcCCCcc--ceeEeCCCCHHH
Q 024705 119 KGRIVEIYGREASGKTTLALHVIK----EAQKLGGYCAYLDVENAL--DP-----SLAEAMGIDAE--NLLIAQPDSAEN 185 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~----~~~~~g~~v~~~~~e~~~--~~-----~~~~~~g~~~~--~l~~~~~~~~ee 185 (264)
...++.|+|+.|+||||||..++. .....-..++|++..... .. .....++...+ .+.-....+.++
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~ 230 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVV 230 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHH
Confidence 458999999999999999998885 233334567888765543 11 23445554422 111112234556
Q ss_pred HHHHHHHHhhcCCccEEEEcCccc
Q 024705 186 LLSVVDTLTKSGSIDVIVVDSVAA 209 (264)
Q Consensus 186 ~~~~i~~~~~~~~~~~vvIDsl~~ 209 (264)
+...+...+...+.-++|+|.+..
T Consensus 231 l~~~l~~~L~~~kr~LlVLDdv~~ 254 (549)
T 2a5y_B 231 LKRMICNALIDRPNTLFVFDDVVQ 254 (549)
T ss_dssp HHHHHHHHHTTSTTEEEEEEEECC
T ss_pred HHHHHHHHHcCCCcEEEEEECCCC
Confidence 667777666543367899997764
No 284
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=97.27 E-value=0.0012 Score=57.86 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=36.7
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~ 159 (264)
..++++.|..|+||||++.+++..++..|.+|++++.|..
T Consensus 19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA 58 (329)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 4678889999999999999999999999999999999865
No 285
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=97.27 E-value=0.0004 Score=63.40 Aligned_cols=48 Identities=19% Similarity=0.326 Sum_probs=41.9
Q ss_pred CCCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHh
Q 024705 95 SRRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 95 ~~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
....+.+.||+..+|.++. +-+|+-..|.|++|+|||+|+.+++..+.
T Consensus 125 ~~~~e~l~TGiraID~l~p---igrGQr~~Ifgg~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 125 RKPEQFIQTGISTIDVMNT---LVRGQKLPIFSGSGLPANEIAAQIARQAT 172 (464)
T ss_dssp CCCCCBCBCSCHHHHTTSC---CBTTCBCCEEEETTSCHHHHHHHHHHHCB
T ss_pred cCccccccCcceeeecccc---cccCCEEEEecCCCCCchHHHHHHHHHHH
Confidence 4557889999999999986 77899999999999999999988877654
No 286
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.26 E-value=0.00013 Score=60.65 Aligned_cols=36 Identities=31% Similarity=0.134 Sum_probs=29.1
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEe
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~ 155 (264)
..++|.++.|.|++||||||++..++.. ++.+.+..
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~ 51 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLT 51 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEEC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEe
Confidence 4578999999999999999988887664 55566654
No 287
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.26 E-value=0.00032 Score=56.74 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=28.4
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEE
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYL 154 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~ 154 (264)
+|.+++|.|++||||||++..++..+...| .++..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~ 37 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR-DVYLT 37 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEEe
Confidence 467899999999999999999988776555 55443
No 288
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.26 E-value=0.00054 Score=59.10 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=21.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHHh
Q 024705 122 IVEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
.++|+||+|+|||+++..++..+.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 389999999999999999998764
No 289
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=97.23 E-value=0.0017 Score=60.85 Aligned_cols=59 Identities=19% Similarity=0.213 Sum_probs=48.0
Q ss_pred CCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC
Q 024705 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (264)
Q Consensus 96 ~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~ 159 (264)
...+.+.||+..+|.++. +-+|+-..|.|++|+|||+++.+++.+. ...-++|....+.
T Consensus 211 ~~~epl~TGirvID~l~P---igrGqr~~Ifgg~g~GKT~L~~~ia~~~--~~~v~V~~~iGER 269 (600)
T 3vr4_A 211 NPDVPMITGQRVIDTFFP---VTKGGAAAVPGPFGAGKTVVQHQIAKWS--DVDLVVYVGCGER 269 (600)
T ss_dssp CCCSBCCCCCHHHHHHSC---CBTTCEEEEECCTTSCHHHHHHHHHHHS--SCSEEEEEEEEEC
T ss_pred CCCceecccchhhhccCC---ccCCCEEeeecCCCccHHHHHHHHHhcc--CCCEEEEEEeccc
Confidence 456889999999999986 8899999999999999999999887753 3445666655444
No 290
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.22 E-value=0.003 Score=55.31 Aligned_cols=86 Identities=14% Similarity=0.121 Sum_probs=48.3
Q ss_pred cEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCH-HHHH--HcCCCccceeEeC-----CCCHHHHHHHHHH
Q 024705 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDP-SLAE--AMGIDAENLLIAQ-----PDSAENLLSVVDT 192 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~-~~~~--~~g~~~~~l~~~~-----~~~~ee~~~~i~~ 192 (264)
..++++||+|+|||+++..++..+....... ...-.. ...+ .-|..++-..+.. ....+++.+.+..
T Consensus 25 ~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-----~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~ 99 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIYALSRYLLCQQPQG-----HKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEK 99 (334)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-----TBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHH
T ss_pred eeEEEECCCCchHHHHHHHHHHHHhCCCCCC-----CCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHH
Confidence 4699999999999999999998875332110 000010 0111 1122222222221 2345666655554
Q ss_pred Hhh---cCCccEEEEcCccccc
Q 024705 193 LTK---SGSIDVIVVDSVAALI 211 (264)
Q Consensus 193 ~~~---~~~~~~vvIDsl~~~~ 211 (264)
... .++.++++||....+.
T Consensus 100 ~~~~~~~~~~kvviIdead~l~ 121 (334)
T 1a5t_A 100 LNEHARLGGAKVVWVTDAALLT 121 (334)
T ss_dssp TTSCCTTSSCEEEEESCGGGBC
T ss_pred HhhccccCCcEEEEECchhhcC
Confidence 422 2467899999988775
No 291
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=97.21 E-value=0.00038 Score=60.80 Aligned_cols=43 Identities=16% Similarity=0.339 Sum_probs=38.3
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~ 159 (264)
+..-+++.|+|.-|+||||++.+++..++..|.+|+.+|.|-.
T Consensus 45 i~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq 87 (314)
T 3fwy_A 45 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPK 87 (314)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSS
T ss_pred CCCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 5556899999999999999999999999999999999999853
No 292
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.21 E-value=0.0024 Score=59.59 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=32.3
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCC
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN 158 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~ 158 (264)
...+++++|.|||||||++..++..+...+..+.+|+.+.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 4568999999999999999999987765666677777543
No 293
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.20 E-value=0.00043 Score=58.11 Aligned_cols=41 Identities=27% Similarity=0.261 Sum_probs=36.4
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~ 159 (264)
.+..++.+.|++|+||||++.+++..+. .|.+++.++.+..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~ 52 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTG 52 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSS
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence 3457899999999999999999999998 8999999998764
No 294
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.20 E-value=0.0004 Score=61.51 Aligned_cols=42 Identities=24% Similarity=0.215 Sum_probs=35.3
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~ 159 (264)
+.+..+.|+|+||+|||||+..++......++++.++..+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 347889999999999999999999888788888888876543
No 295
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.20 E-value=0.00022 Score=57.91 Aligned_cols=40 Identities=33% Similarity=0.370 Sum_probs=30.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~ 159 (264)
-+++|.++.|.|++||||||++..++... ..+.+++.+..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~----~~~~~i~~D~~ 56 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL----PNCSVISQDDF 56 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS----TTEEEEEGGGG
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc----CCcEEEeCCcc
Confidence 46788999999999999999988876532 14667776643
No 296
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.19 E-value=0.00057 Score=62.63 Aligned_cols=81 Identities=20% Similarity=0.192 Sum_probs=50.4
Q ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHh
Q 024705 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLT 194 (264)
Q Consensus 115 gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~ 194 (264)
.|..++.-++++||||+|||+++..++..+.. ....++++....... .....+.+...+....
T Consensus 58 ~~~~~~~~iLl~GppGtGKT~la~ala~~l~~-~~~~~~~~~~~~~~~----------------~~~~~~~~~~~f~~a~ 120 (456)
T 2c9o_A 58 SKKMAGRAVLLAGPPGTGKTALALAIAQELGS-KVPFCPMVGSEVYST----------------EIKKTEVLMENFRRAI 120 (456)
T ss_dssp TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCT-TSCEEEEEGGGGCCS----------------SSCHHHHHHHHHHHTE
T ss_pred hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCC-CceEEEEeHHHHHHH----------------hhhhhHHHHHHHHHHH
Confidence 36666677999999999999999999887532 244555553221111 0111233333333331
Q ss_pred --hcCCccEEEEcCcccccc
Q 024705 195 --KSGSIDVIVVDSVAALIP 212 (264)
Q Consensus 195 --~~~~~~~vvIDsl~~~~~ 212 (264)
....+.++++|.+..+.+
T Consensus 121 ~~~~~~~~il~iDEid~l~~ 140 (456)
T 2c9o_A 121 GLRIKETKEVYEGEVTELTP 140 (456)
T ss_dssp EEEEEEEEEEEEEEEEEEEE
T ss_pred hhhhcCCcEEEEechhhccc
Confidence 335678999999999885
No 297
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.19 E-value=0.0009 Score=58.16 Aligned_cols=81 Identities=15% Similarity=0.172 Sum_probs=48.0
Q ss_pred HHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhc---CCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHH
Q 024705 108 LDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKL---GGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAE 184 (264)
Q Consensus 108 LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~---g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~e 184 (264)
|-..+. .|- ...++++||+|+|||+++..++...... ...+.+++.+. ....++
T Consensus 9 L~~~i~-~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~--------------------~~~~id 65 (305)
T 2gno_A 9 LKRIIE-KSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG--------------------ENIGID 65 (305)
T ss_dssp HHHHHH-TCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS--------------------SCBCHH
T ss_pred HHHHHH-CCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc--------------------CCCCHH
Confidence 444444 332 4589999999999999999998753111 11222222110 023455
Q ss_pred HHHHHHHHHhh---cCCccEEEEcCccccc
Q 024705 185 NLLSVVDTLTK---SGSIDVIVVDSVAALI 211 (264)
Q Consensus 185 e~~~~i~~~~~---~~~~~~vvIDsl~~~~ 211 (264)
++.+.+..... .++.++++||....+.
T Consensus 66 ~ir~li~~~~~~p~~~~~kvviIdead~lt 95 (305)
T 2gno_A 66 DIRTIKDFLNYSPELYTRKYVIVHDCERMT 95 (305)
T ss_dssp HHHHHHHHHTSCCSSSSSEEEEETTGGGBC
T ss_pred HHHHHHHHHhhccccCCceEEEeccHHHhC
Confidence 55555544421 2356899999988775
No 298
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.17 E-value=0.00025 Score=57.78 Aligned_cols=27 Identities=7% Similarity=0.282 Sum_probs=23.7
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
.+|.+++|.||+|+|||||+..++...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 478999999999999999999888653
No 299
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.17 E-value=0.00019 Score=67.41 Aligned_cols=41 Identities=29% Similarity=0.382 Sum_probs=33.8
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCC-eEEEEecC
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGG-YCAYLDVE 157 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~-~v~~~~~e 157 (264)
+.+|.++.|+|+|||||||++..++..+...++ .+.+++.+
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD 407 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGD 407 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCc
Confidence 568999999999999999999999988766554 56667654
No 300
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.17 E-value=0.00051 Score=55.68 Aligned_cols=38 Identities=18% Similarity=0.351 Sum_probs=31.0
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEe
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~ 155 (264)
.+|.+++|.|++||||||++..++..+...+-.+..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~ 44 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR 44 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEee
Confidence 36789999999999999999999988766666664443
No 301
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.15 E-value=0.00028 Score=59.04 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=22.8
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
++.++.|.|||||||||++..++...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999988543
No 302
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.15 E-value=0.00029 Score=55.58 Aligned_cols=25 Identities=16% Similarity=0.300 Sum_probs=22.1
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHH
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
|.+++|.|+|||||||++..++...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999988754
No 303
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.15 E-value=0.00025 Score=56.31 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=23.0
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
.+|.++.|.|+|||||||++..++...
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 357889999999999999999988654
No 304
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=97.15 E-value=0.0011 Score=59.16 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=33.7
Q ss_pred cEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEec
Q 024705 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~ 156 (264)
.++.+.|..|+||||++.+++..++..|.+|++++.
T Consensus 3 ~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 3 LILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp EEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 467889999999999999999999999999999998
No 305
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.14 E-value=0.00084 Score=59.71 Aligned_cols=36 Identities=25% Similarity=0.168 Sum_probs=28.2
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEec
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~ 156 (264)
.++..++|+||||+|||+++..++..+ +.+++.++.
T Consensus 70 ~~~~~ill~Gp~GtGKT~la~~la~~l---~~~~~~~~~ 105 (376)
T 1um8_A 70 LSKSNILLIGPTGSGKTLMAQTLAKHL---DIPIAISDA 105 (376)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEG
T ss_pred cCCCCEEEECCCCCCHHHHHHHHHHHh---CCCEEEecc
Confidence 345568999999999999999998765 556666654
No 306
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.13 E-value=0.00037 Score=62.44 Aligned_cols=35 Identities=37% Similarity=0.449 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
++++|++++|.||||+||||++..++... ++.+++
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~ 199 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALN 199 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEEC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEE
Confidence 79999999999999999999999988743 445443
No 307
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.13 E-value=0.00046 Score=59.44 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=28.5
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecC
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e 157 (264)
.+|.+++|+|||||||||++..++... +....+++.|
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~---~~~~~~Is~D 67 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDND 67 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT---TTCCEEECTH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh---CCCeEEEech
Confidence 457899999999999999999987643 2245667654
No 308
>4a8j_A Elongator complex protein 4; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_A
Probab=97.12 E-value=0.00017 Score=63.75 Aligned_cols=39 Identities=38% Similarity=0.464 Sum_probs=34.9
Q ss_pred CCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHH
Q 024705 97 RGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLAL 138 (264)
Q Consensus 97 ~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~ 138 (264)
....++||+++||.+||-||++.|++++|.|+ |||+++.
T Consensus 17 ~~~~~stG~~~lD~llghgGlp~g~~~li~e~---~~t~~~~ 55 (361)
T 4a8j_A 17 SQPTTSTGSADLDSILGHMGLPLGNSVLVEEQ---STTEFHS 55 (361)
T ss_dssp CCEEECCSCHHHHHHTTSSSEETTCEEEEEEC---SSCCTHH
T ss_pred CCeeeccCCccHHHHhccCCccCCcEEEEeCC---CCCcHHH
Confidence 35789999999999997579999999999998 8999884
No 309
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.12 E-value=0.0003 Score=55.77 Aligned_cols=27 Identities=26% Similarity=0.439 Sum_probs=22.8
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
+.+| +++|+|||||||||++..+...+
T Consensus 24 ~~~g-~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 24 FSKG-FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp CCSS-EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 4466 89999999999999988887654
No 310
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.09 E-value=0.00082 Score=54.40 Aligned_cols=40 Identities=20% Similarity=0.193 Sum_probs=31.5
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEe
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~ 155 (264)
...+|.+++|.|++||||||++..++..+...+-.+..+.
T Consensus 6 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 45 (212)
T 2wwf_A 6 DKKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLY 45 (212)
T ss_dssp CCBCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred hhhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3557889999999999999999999987765555554433
No 311
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.08 E-value=0.00067 Score=63.85 Aligned_cols=101 Identities=17% Similarity=0.182 Sum_probs=58.5
Q ss_pred HHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHH---hhc-CCeEEEEecCCCCCHH-------HHHHcCCCccc
Q 024705 106 LKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEA---QKL-GGYCAYLDVENALDPS-------LAEAMGIDAEN 174 (264)
Q Consensus 106 ~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~---~~~-g~~v~~~~~e~~~~~~-------~~~~~g~~~~~ 174 (264)
..|...+. .+-..+.++.|+|++|+|||||+..++... ... ...+.|++........ ....++....
T Consensus 134 ~~L~~~L~-~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~l~~~l~~~~~- 211 (591)
T 1z6t_A 134 NAIQQKLS-KLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNLCTRLDQDES- 211 (591)
T ss_dssp HHHHHHHT-TSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHHHHHHHHCSSCC-
T ss_pred HHHHHHHh-cccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHHHHHHHhccccc-
Confidence 34555554 222346799999999999999999987543 111 2458888765442221 1222331100
Q ss_pred eeEeCCCCHHHHHHHHHHHhhcC-CccEEEEcCcc
Q 024705 175 LLIAQPDSAENLLSVVDTLTKSG-SIDVIVVDSVA 208 (264)
Q Consensus 175 l~~~~~~~~ee~~~~i~~~~~~~-~~~~vvIDsl~ 208 (264)
..-..+.+.++....+....... +.-++|+|.+.
T Consensus 212 ~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~ 246 (591)
T 1z6t_A 212 FSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVW 246 (591)
T ss_dssp SCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEEC
T ss_pred cccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCC
Confidence 00112345666666666655443 57789999874
No 312
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=97.05 E-value=0.00076 Score=56.90 Aligned_cols=39 Identities=21% Similarity=0.334 Sum_probs=34.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC
Q 024705 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL 160 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~ 160 (264)
++.|.|..|+||||++.+++..++..|.+|+++|.+...
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~ 41 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKA 41 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTS
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCC
Confidence 456689999999999999999999999999999998654
No 313
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.05 E-value=0.00035 Score=60.33 Aligned_cols=44 Identities=14% Similarity=0.189 Sum_probs=32.3
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcC--C-eEEEEecCCC
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQKLG--G-YCAYLDVENA 159 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g--~-~v~~~~~e~~ 159 (264)
.-.++.++.|.|++||||||++..++..+...+ . .+.+++.+.-
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 345788999999999999999999888776543 2 3334366543
No 314
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.04 E-value=0.0004 Score=54.20 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHH
Q 024705 122 IVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
+++|.|++||||||++..++...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999988754
No 315
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.03 E-value=0.00058 Score=60.25 Aligned_cols=35 Identities=29% Similarity=0.393 Sum_probs=29.2
Q ss_pred HHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHh
Q 024705 110 LALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 110 ~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
..+. .|..+|..++|+||||+|||+++..++..+.
T Consensus 61 ~~~~-~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 61 EMIR-EGKIAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp HHHH-TTCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred HHHH-cCCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3344 5667788999999999999999999998774
No 316
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.03 E-value=0.00042 Score=59.82 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=30.9
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL 160 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~ 160 (264)
++-++.|.|++||||||++..++..+...+..+.+++.+.-.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 456899999999999999999987665556668888877654
No 317
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.02 E-value=0.00038 Score=58.69 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=23.3
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHH
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~ 143 (264)
.+|.++.|.||+||||||++..++..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999988853
No 318
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.01 E-value=0.00081 Score=53.68 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=27.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEe
Q 024705 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~ 155 (264)
++.|.|++||||||++..++..+...|..++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 5889999999999999999888766677765443
No 319
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.00 E-value=0.00039 Score=58.56 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=29.4
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCC
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN 158 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~ 158 (264)
.++.+++|.|+|||||||++..++... +..+.+++.+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l---~~~~~~~~~D~ 67 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF---QGNIVIIDGDS 67 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT---TTCCEEECGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc---CCCcEEEecHH
Confidence 456899999999999999999988754 33456666654
No 320
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.99 E-value=0.00085 Score=53.34 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=27.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEe
Q 024705 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~ 155 (264)
+++|.|++||||||++..++..+...|..++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 5889999999999999999887765566655444
No 321
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.99 E-value=0.0038 Score=51.64 Aligned_cols=92 Identities=18% Similarity=0.138 Sum_probs=49.7
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHh-hcCC----eEEEEecCCCCCHH----HHHHcCCCccc--------eeEe-
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQ-KLGG----YCAYLDVENALDPS----LAEAMGIDAEN--------LLIA- 178 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~-~~g~----~v~~~~~e~~~~~~----~~~~~g~~~~~--------l~~~- 178 (264)
+..|+.+++.||+||||||++...+.... ..+. ++++.......... .+..++..... -...
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 152 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILP 152 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccC
Confidence 34578999999999999987766665433 2222 56665432111111 12222222110 0000
Q ss_pred -C-----CCCHHHHHHHHHHHhhcCCccEEEEcCcccc
Q 024705 179 -Q-----PDSAENLLSVVDTLTKSGSIDVIVVDSVAAL 210 (264)
Q Consensus 179 -~-----~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~ 210 (264)
. ..+...+...+... -.+++++|+|....+
T Consensus 153 ~~~~~Ivv~Tpg~l~~~l~~~--l~~~~~lVlDEah~~ 188 (235)
T 3llm_A 153 RPHASIMFCTVGVLLRKLEAG--IRGISHVIVDEIHER 188 (235)
T ss_dssp CSSSEEEEEEHHHHHHHHHHC--CTTCCEEEECCTTSC
T ss_pred CCCCeEEEECHHHHHHHHHhh--hcCCcEEEEECCccC
Confidence 0 12455555555442 357899999998764
No 322
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.97 E-value=0.00056 Score=54.59 Aligned_cols=37 Identities=35% Similarity=0.441 Sum_probs=27.8
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecC
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e 157 (264)
.++|..++|+|++||||||++..++..+ .| ..+++.+
T Consensus 7 ~~~~~~I~l~G~~GsGKSTv~~~La~~l--~g--~~~id~d 43 (184)
T 1y63_A 7 QPKGINILITGTPGTGKTSMAEMIAAEL--DG--FQHLEVG 43 (184)
T ss_dssp CCSSCEEEEECSTTSSHHHHHHHHHHHS--TT--EEEEEHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhc--CC--CEEeeHH
Confidence 4567899999999999999998887642 12 4566644
No 323
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.97 E-value=0.00043 Score=59.12 Aligned_cols=32 Identities=19% Similarity=0.175 Sum_probs=21.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
.+.|.||||+|||||+..++....+..+.+.+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~ 35 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWN 35 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCcccc
Confidence 47899999999999999988877665555544
No 324
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.97 E-value=0.00031 Score=64.91 Aligned_cols=36 Identities=11% Similarity=0.140 Sum_probs=29.2
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
+++ +++.|.||||||||||+..++....+..+.+.+
T Consensus 27 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~ 62 (483)
T 3euj_A 27 FDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNF 62 (483)
T ss_dssp CCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCC
T ss_pred Ecc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEE
Confidence 677 999999999999999999888876655555444
No 325
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=96.96 E-value=0.0013 Score=58.15 Aligned_cols=58 Identities=16% Similarity=0.154 Sum_probs=45.0
Q ss_pred HHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHh--hcCCeEEEEecCCCCCHHHHHHcCC
Q 024705 108 LDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQ--KLGGYCAYLDVENALDPSLAEAMGI 170 (264)
Q Consensus 108 LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~--~~g~~v~~~~~e~~~~~~~~~~~g~ 170 (264)
|+.++. . +.-.++++.|..|+||||++.+++..++ ..|.+|++++.+. .......+|.
T Consensus 9 L~~~l~-~--~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~--~~~l~~~~~~ 68 (348)
T 3io3_A 9 LESIVQ-H--DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDP--AHNLSDAFCQ 68 (348)
T ss_dssp SHHHHT-C--TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS--SCHHHHHHTS
T ss_pred HHHHhc-C--CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC--CCChHHHhcc
Confidence 566665 2 2347999999999999999999999999 8899999999983 3334444553
No 326
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.96 E-value=0.00028 Score=65.73 Aligned_cols=38 Identities=18% Similarity=0.134 Sum_probs=29.1
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEe
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~ 155 (264)
+++|.+++|+||+||||||++..++..+ +...+++.+.
T Consensus 257 v~~g~~i~I~GptGSGKTTlL~aL~~~i-~~~~giitie 294 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTTLNAIMMFI-PPDAKVVSIE 294 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHHHHHHGGGS-CTTCCEEEEE
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhC-CCCCCEEEEc
Confidence 3688999999999999999988877655 4444555554
No 327
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.96 E-value=0.00052 Score=55.44 Aligned_cols=36 Identities=14% Similarity=0.332 Sum_probs=27.8
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL 160 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~ 160 (264)
..+++|.|++||||||++..++... | ..+++.+.-.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l---g--~~~i~~d~~~ 53 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC---G--YPFIEGDALH 53 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH---T--CCEEEGGGGC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh---C--CEEEeCCcCc
Confidence 4689999999999999999988765 2 4466665543
No 328
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=96.96 E-value=0.008 Score=50.38 Aligned_cols=90 Identities=20% Similarity=0.314 Sum_probs=58.4
Q ss_pred CcEEEEEec-CCCChHHHHHHHHHHHhhcCCeEEEEe-----cCC----CCCH-HHH---HHc--CCCccce--eEe-C-
Q 024705 120 GRIVEIYGR-EASGKTTLALHVIKEAQKLGGYCAYLD-----VEN----ALDP-SLA---EAM--GIDAENL--LIA-Q- 179 (264)
Q Consensus 120 G~~~~I~G~-~GsGKTtl~~~l~~~~~~~g~~v~~~~-----~e~----~~~~-~~~---~~~--g~~~~~l--~~~-~- 179 (264)
...+.|+|. +|+|||+++..++..+..+|.+|.||- ... ..+. ..+ +++ |.+.+++ +.+ .
T Consensus 21 ~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fKPv~~g~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~~p~~~~~p 100 (242)
T 3qxc_A 21 GHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDISFYRYHKV 100 (242)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEECCEECSCCTTTCCCSHHHHHHHHHHTTCTTCCHHHHCCEECSSS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEeeeecCCcccCCCCchHHHHHHHHHHHhCCCChHHeeeEEECCC
Confidence 456788887 999999999999999999999999995 221 1111 221 222 4544322 222 1
Q ss_pred --------------CCCHHHHHHHHHHHhhcCCccEEEEcCccccc
Q 024705 180 --------------PDSAENLLSVVDTLTKSGSIDVIVVDSVAALI 211 (264)
Q Consensus 180 --------------~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~ 211 (264)
....+++.+.+..+. .+.++++||....+.
T Consensus 101 ~sp~~aa~~~g~~~~i~~~~I~~~~~~l~--~~~D~vlIEGagGl~ 144 (242)
T 3qxc_A 101 SAPLIAQQEEDPNAPIDTDNLTQRLHNFT--KTYDLVIVEGAGGLC 144 (242)
T ss_dssp SCHHHHHHHHCTTCCCCHHHHHHHHHHGG--GTCSEEEEECCSCTT
T ss_pred CChHHHHHHcCCCCcCCHHHHHHHHHHHH--hcCCEEEEECCCCcc
Confidence 123455555555542 478999999988877
No 329
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.95 E-value=0.003 Score=54.82 Aligned_cols=35 Identities=26% Similarity=0.334 Sum_probs=28.9
Q ss_pred cEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCC
Q 024705 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN 158 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~ 158 (264)
.+++|+||+|+|||+|+..++..+. ..++|++...
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~---~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELN---LPYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHT---CCEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcC---CCEEEEEchh
Confidence 5999999999999999999987653 3478888654
No 330
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=96.95 E-value=0.001 Score=56.83 Aligned_cols=39 Identities=18% Similarity=0.352 Sum_probs=34.9
Q ss_pred EEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC
Q 024705 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL 160 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~ 160 (264)
++.|.|..|+||||++.+++..++..|.+|+++|.+...
T Consensus 4 vIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~ 42 (289)
T 2afh_E 4 QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKA 42 (289)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred EEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 566689999999999999999999999999999998653
No 331
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.95 E-value=0.00056 Score=54.60 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=23.0
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
++.+++|.|++||||||++..++...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 56799999999999999999988754
No 332
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.94 E-value=0.001 Score=59.53 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=35.5
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~ 159 (264)
..+..+.|.|++|+||||++..++......|.++++++.+..
T Consensus 33 ~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 33 RTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPERE 74 (392)
T ss_dssp BCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred cccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcC
Confidence 356678999999999999999999988888888888886543
No 333
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.94 E-value=0.00059 Score=54.13 Aligned_cols=25 Identities=20% Similarity=0.219 Sum_probs=22.2
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHH
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
+..++|.|++||||||++..++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998755
No 334
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.93 E-value=0.00058 Score=54.03 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=23.8
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
+.++.+++|.|++||||||++..++...
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3457789999999999999999888754
No 335
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.93 E-value=0.00049 Score=54.11 Aligned_cols=32 Identities=25% Similarity=0.255 Sum_probs=24.5
Q ss_pred cEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEec
Q 024705 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~ 156 (264)
.+++|.|+|||||||++..++.. .....+++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~----~~~~~~i~~ 34 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK----NPGFYNINR 34 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH----STTEEEECH
T ss_pred eEEEEecCCCCCHHHHHHHHHhh----cCCcEEecH
Confidence 47899999999999999988762 123556664
No 336
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.92 E-value=0.00073 Score=52.50 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=17.8
Q ss_pred EEEEEecCCCChHHHHHHH
Q 024705 122 IVEIYGREASGKTTLALHV 140 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l 140 (264)
++.|.|+|||||||++..+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999988
No 337
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.91 E-value=0.00056 Score=54.35 Aligned_cols=28 Identities=36% Similarity=0.468 Sum_probs=24.8
Q ss_pred cEEEEEecCCCChHHHHHHHHHHHhhcC
Q 024705 121 RIVEIYGREASGKTTLALHVIKEAQKLG 148 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~~~~~~g 148 (264)
+++.|.|++|||||||+..++....+.|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g 30 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERG 30 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcC
Confidence 4789999999999999999998887765
No 338
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.91 E-value=0.00068 Score=55.54 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=21.8
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHH
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
+.++.|.||+||||||++..++...
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999887754
No 339
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.90 E-value=0.00034 Score=56.77 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=27.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHHhhcCCeEEEE
Q 024705 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYL 154 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~ 154 (264)
++.|.|++||||||++..++..+...|..+.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~ 34 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL 34 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 688999999999999999998876556555544
No 340
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.89 E-value=0.00056 Score=60.04 Aligned_cols=24 Identities=38% Similarity=0.338 Sum_probs=21.9
Q ss_pred cEEEEEecCCCChHHHHHHHHHHH
Q 024705 121 RIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
..++|+||||+||||++..++..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 679999999999999999998876
No 341
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.89 E-value=0.00064 Score=54.05 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
++.+++|.|++||||||++..++...
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999887654
No 342
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=96.89 E-value=0.0012 Score=54.60 Aligned_cols=41 Identities=10% Similarity=0.095 Sum_probs=34.9
Q ss_pred CCcEEEEE-ecCCCChHHHHHHHHHHHhhc-CCeEEEEecCCC
Q 024705 119 KGRIVEIY-GREASGKTTLALHVIKEAQKL-GGYCAYLDVENA 159 (264)
Q Consensus 119 ~G~~~~I~-G~~GsGKTtl~~~l~~~~~~~-g~~v~~~~~e~~ 159 (264)
.+.++.++ +..|+||||++.+++..++.. |.+|+++|.+..
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 35566666 458999999999999999998 999999999865
No 343
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.88 E-value=0.00066 Score=64.96 Aligned_cols=42 Identities=26% Similarity=0.267 Sum_probs=36.2
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~ 159 (264)
....+.+|.||||+|||+++..++..+..++.+++....-..
T Consensus 203 ~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~ 244 (646)
T 4b3f_X 203 SQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNI 244 (646)
T ss_dssp HCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHH
T ss_pred cCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchH
Confidence 345699999999999999999999999999999988876543
No 344
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.88 E-value=0.0023 Score=57.91 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=21.9
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHH
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIK 142 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~ 142 (264)
....+++|+|+|||||||++..++.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999988765
No 345
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.88 E-value=0.00034 Score=60.70 Aligned_cols=36 Identities=14% Similarity=0.131 Sum_probs=26.8
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
+..|.++.|.||||+|||||+..++ ......+.+.+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~ 197 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSE 197 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC--
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCccccccc
Confidence 3458899999999999999999988 55444555544
No 346
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.88 E-value=0.00076 Score=55.75 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=26.1
Q ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 115 GGLPKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 115 gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
.-+.+..+++|.|||||||+|.+..++...
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 456788899999999999999999988764
No 347
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.87 E-value=0.0013 Score=64.08 Aligned_cols=81 Identities=15% Similarity=0.158 Sum_probs=47.5
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhhc-------CCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHH
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQKL-------GGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVV 190 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~-------g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i 190 (264)
.++..++|+||||+|||+++..++..+... +..+..++..... .|.. .....++.+..+
T Consensus 205 ~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~-------~~~~-------~~g~~e~~l~~~ 270 (758)
T 1r6b_X 205 RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL-------AGTK-------YRGDFEKRFKAL 270 (758)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC----------CCCC-------CSSCHHHHHHHH
T ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh-------cccc-------ccchHHHHHHHH
Confidence 367788999999999999999999877542 2222222211000 0000 012234444433
Q ss_pred HHHhhcCCccEEEEcCcccccc
Q 024705 191 DTLTKSGSIDVIVVDSVAALIP 212 (264)
Q Consensus 191 ~~~~~~~~~~~vvIDsl~~~~~ 212 (264)
...+...+..+++||.+..+.+
T Consensus 271 ~~~~~~~~~~iL~IDEi~~l~~ 292 (758)
T 1r6b_X 271 LKQLEQDTNSILFIDEIHTIIG 292 (758)
T ss_dssp HHHHSSSSCEEEEETTTTTTTT
T ss_pred HHHHHhcCCeEEEEechHHHhh
Confidence 3333444578999999998874
No 348
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.85 E-value=0.00067 Score=57.23 Aligned_cols=23 Identities=39% Similarity=0.690 Sum_probs=20.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHH
Q 024705 122 IVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
+++|.|||||||||++..++...
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
No 349
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.82 E-value=0.00083 Score=54.02 Aligned_cols=36 Identities=25% Similarity=0.495 Sum_probs=27.2
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEe
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~ 155 (264)
.+|.+++|.|++||||||++..++..+ .|.+++.++
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~ 37 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI--PANTIKYLN 37 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS--CGGGEEEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH--CCCceEEEe
Confidence 367899999999999999999887754 233454444
No 350
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.81 E-value=0.00062 Score=61.86 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=24.0
Q ss_pred CCCCCcE--EEEEecCCCChHHHHHHHHHH
Q 024705 116 GLPKGRI--VEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 116 Gl~~G~~--~~I~G~~GsGKTtl~~~l~~~ 143 (264)
-+++|.+ ++|+||||+|||||+..++..
T Consensus 36 ~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 36 SVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp SCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred EecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 5789999 999999999999998888754
No 351
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=96.81 E-value=0.018 Score=48.42 Aligned_cols=89 Identities=17% Similarity=0.271 Sum_probs=57.0
Q ss_pred cEEEEEec-CCCChHHHHHHHHHHHhhcCCeEEEEe-----cC-CCCCH-HHHHHcCCCc-cceeEeC-C----------
Q 024705 121 RIVEIYGR-EASGKTTLALHVIKEAQKLGGYCAYLD-----VE-NALDP-SLAEAMGIDA-ENLLIAQ-P---------- 180 (264)
Q Consensus 121 ~~~~I~G~-~GsGKTtl~~~l~~~~~~~g~~v~~~~-----~e-~~~~~-~~~~~~g~~~-~~l~~~~-~---------- 180 (264)
..+.|+|. +|+|||+++..++..+.++|.+|.||- .. ...+. ...+..|... .+.+.+. +
T Consensus 27 ~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKPv~~g~~~~~~D~~~~~~~~g~~~~~~~~~~~~p~sP~~aa~~~ 106 (251)
T 3fgn_A 27 TILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTARGDDDLAEVGRLAGVTQLAGLARYPQPMAPAAAAEHA 106 (251)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEEEECCGGGTCCHHHHHHHHHCCCEEEEEEECSSSSCHHHHHHHT
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeeecCCCCCCHHHHHHHHHcCCCCCCCCeeECCCCChHHHHHHc
Confidence 45778887 799999999999999999999999986 21 11122 2334456532 2332222 1
Q ss_pred ----CCHHHHHHHHHHHhhcCCccEEEEcCccccc
Q 024705 181 ----DSAENLLSVVDTLTKSGSIDVIVVDSVAALI 211 (264)
Q Consensus 181 ----~~~ee~~~~i~~~~~~~~~~~vvIDsl~~~~ 211 (264)
...+++.+.+.++ ..+.++++||....++
T Consensus 107 ~~~~~~~~~i~~~~~~l--~~~~D~vlIEGagGl~ 139 (251)
T 3fgn_A 107 GMALPARDQIVRLIADL--DRPGRLTLVEGAGGLL 139 (251)
T ss_dssp TCCCCCHHHHHHHHHTT--CCTTCEEEEECSSSTT
T ss_pred CCCCCCHHHHHHHHHHH--HhcCCEEEEECCCCCc
Confidence 2334444444443 3478999999988776
No 352
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.80 E-value=0.003 Score=59.35 Aligned_cols=39 Identities=13% Similarity=0.005 Sum_probs=29.6
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHhhc----CCeEEEEecCC
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQKL----GGYCAYLDVEN 158 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~~~----g~~v~~~~~e~ 158 (264)
+--++|+|.+|||||+++..++..++.. .-+++.+|...
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 3458999999999999999998887743 33566666543
No 353
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.79 E-value=0.0015 Score=53.80 Aligned_cols=38 Identities=21% Similarity=0.185 Sum_probs=32.0
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEe
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~ 155 (264)
.+|.++.|.|++||||||.+..++..+...|..+....
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 46889999999999999999999988877777776554
No 354
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=96.78 E-value=0.001 Score=62.90 Aligned_cols=53 Identities=17% Similarity=0.211 Sum_probs=43.4
Q ss_pred HHHHHHhcCC-CCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC
Q 024705 106 LKLDLALGIG-GLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (264)
Q Consensus 106 ~~LD~~l~~g-Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~ 159 (264)
+.||.+++ + +-....++++.|.+|+||||++.+++..++..|.+++++|.+..
T Consensus 313 ~~l~~~~~-~~~~~~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~ 366 (589)
T 1ihu_A 313 PSLSALVD-DIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA 366 (589)
T ss_dssp CCHHHHHH-HHHTTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred chhhhhhh-hhhccCCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCc
Confidence 56777765 2 23345678889999999999999999999999999999998854
No 355
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=96.78 E-value=0.0015 Score=61.71 Aligned_cols=41 Identities=15% Similarity=0.163 Sum_probs=37.7
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~ 159 (264)
...++++.|.+|+||||++.+++..++..|.+|++++.+..
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~~ 47 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA 47 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence 45789999999999999999999999999999999999874
No 356
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.77 E-value=0.00088 Score=55.18 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=21.8
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHH
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~ 143 (264)
+..++.+++|.|++||||||++..++..
T Consensus 3 ~~~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 3 ASARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp ----CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3456788999999999999999988764
No 357
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=96.75 E-value=0.0016 Score=57.74 Aligned_cols=49 Identities=14% Similarity=0.169 Sum_probs=41.2
Q ss_pred HHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHh--hcCCeEEEEecCCC
Q 024705 108 LDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQ--KLGGYCAYLDVENA 159 (264)
Q Consensus 108 LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~--~~g~~v~~~~~e~~ 159 (264)
|+.++. . +.-.+++..|..|+||||++.+++..++ ..|.+|+.++.+..
T Consensus 9 l~~l~~-~--~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~ 59 (354)
T 2woj_A 9 LHSLIT-S--TTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA 59 (354)
T ss_dssp CHHHHT-C--SSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred HHHHhc-C--CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 566665 2 2346788889999999999999999999 88999999999975
No 358
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.75 E-value=0.001 Score=54.47 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=22.8
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
+|.+++|.|++||||||++..++...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999988754
No 359
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.75 E-value=0.0035 Score=60.24 Aligned_cols=91 Identities=13% Similarity=0.160 Sum_probs=50.3
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhh--cCCeEEEEecCCC--CC-HHHHHHcCCCccc---------eeEeCCCC
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQK--LGGYCAYLDVENA--LD-PSLAEAMGIDAEN---------LLIAQPDS 182 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~--~g~~v~~~~~e~~--~~-~~~~~~~g~~~~~---------l~~~~~~~ 182 (264)
++++..+.|.|++|+|||||+..++..... ..+.+ .+.... .. ..+.+.+.+..+. +.+.+...
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V--~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG 83 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV--EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPG 83 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG--GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCC
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee--cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCC
Confidence 567899999999999999999998865432 12222 111110 11 1233334444332 22332222
Q ss_pred HHHHHHHHHHHhhcCCccEEEEcCccc
Q 024705 183 AENLLSVVDTLTKSGSIDVIVVDSVAA 209 (264)
Q Consensus 183 ~ee~~~~i~~~~~~~~~~~vvIDsl~~ 209 (264)
.+++...+.......+..++++|....
T Consensus 84 ~~~f~~~~~~~l~~ad~~ilVvD~~~g 110 (665)
T 2dy1_A 84 YGDFVGEIRGALEAADAALVAVSAEAG 110 (665)
T ss_dssp SGGGHHHHHHHHHHCSEEEEEEETTTC
T ss_pred ccchHHHHHHHHhhcCcEEEEEcCCcc
Confidence 334444455555556788899995443
No 360
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.74 E-value=0.0011 Score=55.55 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=30.7
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHhh-----cCCeEEEEecCCCC
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQK-----LGGYCAYLDVENAL 160 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~~-----~g~~v~~~~~e~~~ 160 (264)
.-++.|.|++||||||++..++..+.. .+..+.+++.+.-.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 357999999999999999988875432 24457788876543
No 361
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.73 E-value=0.0011 Score=53.37 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=23.1
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
..+.+++|.|++||||||++..++...
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999988754
No 362
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.73 E-value=0.0011 Score=52.99 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=23.3
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
.++.+++|.|++||||||++..++...
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999988754
No 363
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.72 E-value=0.0014 Score=54.43 Aligned_cols=41 Identities=22% Similarity=0.354 Sum_probs=29.7
Q ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHHHHhhc----CCeEEEEe
Q 024705 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKL----GGYCAYLD 155 (264)
Q Consensus 115 gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~----g~~v~~~~ 155 (264)
|-+.+|.++.|.|++||||||.+..++..+... |..+.+..
T Consensus 20 ~~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 20 GSMARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp ---CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred ccccCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 456789999999999999999999999888766 77776554
No 364
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=96.72 E-value=0.0015 Score=55.00 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=34.6
Q ss_pred CCcEEEE-EecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCC
Q 024705 119 KGRIVEI-YGREASGKTTLALHVIKEAQKLGGYCAYLDVENAL 160 (264)
Q Consensus 119 ~G~~~~I-~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~ 160 (264)
++.++.| .+..|+||||++.+++..++ .|.+|+++|.+...
T Consensus 26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~~ 67 (267)
T 3k9g_A 26 KPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQA 67 (267)
T ss_dssp CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTTC
T ss_pred CCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCCC
Confidence 3556666 46699999999999999999 89999999998754
No 365
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.71 E-value=0.0009 Score=52.70 Aligned_cols=31 Identities=32% Similarity=0.430 Sum_probs=24.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecC
Q 024705 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e 157 (264)
.+.|.|+|||||||++..++... + ..|++.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l---~--~~~~d~d 36 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL---D--LVFLDSD 36 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH---T--CEEEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc---C--CCEEccc
Confidence 58899999999999999998754 2 3466643
No 366
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.71 E-value=0.00078 Score=53.19 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=17.5
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHH
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~ 143 (264)
++.++.|.|++||||||++..++..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 5678999999999999999988764
No 367
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.70 E-value=0.00099 Score=58.15 Aligned_cols=35 Identities=29% Similarity=0.305 Sum_probs=25.9
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEec
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~ 156 (264)
=.+++|+|++||||||++..++... .+.+++.+..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~--~~~~~aVi~~ 38 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ--HGYKIAVIEN 38 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC--CCCCEEEECS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc--CCCcEEEEEe
Confidence 3589999999999999998887653 3445555443
No 368
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=96.69 E-value=0.0017 Score=55.63 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=36.2
Q ss_pred CcEEEEEe---cCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC
Q 024705 120 GRIVEIYG---REASGKTTLALHVIKEAQKLGGYCAYLDVENALD 161 (264)
Q Consensus 120 G~~~~I~G---~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~ 161 (264)
+.++.|++ ..|+||||++.+++..++..|.+|+++|.+....
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~~ 78 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQAT 78 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence 55667775 8999999999999999999999999999987643
No 369
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.69 E-value=0.00091 Score=54.08 Aligned_cols=21 Identities=43% Similarity=0.449 Sum_probs=18.9
Q ss_pred EEEEEecCCCChHHHHHHHHH
Q 024705 122 IVEIYGREASGKTTLALHVIK 142 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~ 142 (264)
++.|.|++||||||++..++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999988865
No 370
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.68 E-value=0.01 Score=58.05 Aligned_cols=93 Identities=16% Similarity=0.113 Sum_probs=49.9
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhh-c--CCeEEEEecCCCCCH----HHHHHcCCCcccee--------EeC--
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQK-L--GGYCAYLDVENALDP----SLAEAMGIDAENLL--------IAQ-- 179 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~-~--g~~v~~~~~e~~~~~----~~~~~~g~~~~~l~--------~~~-- 179 (264)
+..|+.+++.||+||||||++-.++..... . +..++++.-...... ..++.+|....... ...
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~ 185 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNK 185 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTT
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccccCCC
Confidence 445789999999999999976666554332 2 445666542111000 12233343221110 000
Q ss_pred ----CCCHHHHHHHHHHHhhcCCccEEEEcCccc
Q 024705 180 ----PDSAENLLSVVDTLTKSGSIDVIVVDSVAA 209 (264)
Q Consensus 180 ----~~~~ee~~~~i~~~~~~~~~~~vvIDsl~~ 209 (264)
..+...+...+.....-.+++++|+|....
T Consensus 186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~ 219 (773)
T 2xau_A 186 TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHE 219 (773)
T ss_dssp CSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGG
T ss_pred CCEEEECHHHHHHHHhhCccccCCCEEEecCccc
Confidence 113455554443333346789999999885
No 371
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.67 E-value=0.001 Score=53.62 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHHHHH
Q 024705 122 IVEIYGREASGKTTLALHVIK 142 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~ 142 (264)
++.|.|++||||||++..++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 588999999999999988876
No 372
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.67 E-value=0.00038 Score=60.31 Aligned_cols=37 Identities=19% Similarity=0.155 Sum_probs=25.1
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
+..|+++.|.||||+|||||+..++....+..+.+.+
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~ 202 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 202 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhcccccccccceec
Confidence 3458899999999999999988887655444444443
No 373
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.66 E-value=0.015 Score=53.42 Aligned_cols=38 Identities=18% Similarity=0.211 Sum_probs=29.2
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEec
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~ 156 (264)
...++++.|.|||||||++..++......+.....++.
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~ 75 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNV 75 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEec
Confidence 34689999999999999999999876655555555543
No 374
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.65 E-value=0.00073 Score=60.06 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=28.1
Q ss_pred CCCCC--CcEEEEEecCCCChHHHHHHHHHHHhhcC
Q 024705 115 GGLPK--GRIVEIYGREASGKTTLALHVIKEAQKLG 148 (264)
Q Consensus 115 gGl~~--G~~~~I~G~~GsGKTtl~~~l~~~~~~~g 148 (264)
--+++ |+.+.|.||||||||||+..++.......
T Consensus 163 ~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 163 KEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp TTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred HHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 45667 99999999999999999999888765433
No 375
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.65 E-value=0.0013 Score=58.35 Aligned_cols=44 Identities=27% Similarity=0.326 Sum_probs=30.7
Q ss_pred cCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHh-hcCCeEE
Q 024705 103 TGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQ-KLGGYCA 152 (264)
Q Consensus 103 tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~-~~g~~v~ 152 (264)
.|+..|...+ +|+++.|.||||+|||||+..++.... ...+.+.
T Consensus 204 ~gl~~L~~~~------~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~ 248 (358)
T 2rcn_A 204 DGLKPLEEAL------TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVS 248 (358)
T ss_dssp BTHHHHHHHH------TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC---
T ss_pred cCHHHHHHhc------CCCEEEEECCCCccHHHHHHHHhccccccccCCcc
Confidence 3666666654 478999999999999999988876554 3334443
No 376
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=96.64 E-value=0.002 Score=54.32 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=35.3
Q ss_pred CcEEEE-EecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC
Q 024705 120 GRIVEI-YGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD 161 (264)
Q Consensus 120 G~~~~I-~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~ 161 (264)
+.++.+ .+..|+||||++.+++..++..|.+|+++|.+....
T Consensus 18 ~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~ 60 (262)
T 2ph1_A 18 KSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGP 60 (262)
T ss_dssp SCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCC
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence 445555 567899999999999999999999999999987654
No 377
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.64 E-value=0.0013 Score=53.95 Aligned_cols=26 Identities=31% Similarity=0.178 Sum_probs=22.6
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
++.+++|.|++||||||++..++...
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999988754
No 378
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.63 E-value=0.0012 Score=55.72 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=25.2
Q ss_pred CCCC---CcEEEEEecCCCChHHHHHHHHHHH
Q 024705 116 GLPK---GRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 116 Gl~~---G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
-+.+ |..+.|.|++||||||++..++..+
T Consensus 41 ~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 41 EVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3556 9999999999999999999888755
No 379
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=96.62 E-value=0.0021 Score=52.92 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=33.2
Q ss_pred cEEEE-EecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC
Q 024705 121 RIVEI-YGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (264)
Q Consensus 121 ~~~~I-~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~ 159 (264)
.++.| .+..|+||||++.+++..++..|.+|++++.+..
T Consensus 3 ~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 42 (237)
T 1g3q_A 3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLT 42 (237)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred eEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 34555 4568999999999999999999999999999864
No 380
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.62 E-value=0.0013 Score=52.62 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=20.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHH
Q 024705 122 IVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
+++|.|++||||||++..++..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58899999999999999998765
No 381
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.61 E-value=0.0012 Score=52.36 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=20.9
Q ss_pred cEEEEEecCCCChHHHHHHHHHHH
Q 024705 121 RIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
.++.|.|+|||||||++..++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999988754
No 382
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.60 E-value=0.00068 Score=57.17 Aligned_cols=23 Identities=43% Similarity=0.393 Sum_probs=20.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHH
Q 024705 122 IVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
-++|+||||+|||+++..++..+
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 38899999999999999998865
No 383
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=96.60 E-value=0.0022 Score=52.25 Aligned_cols=38 Identities=21% Similarity=0.119 Sum_probs=32.7
Q ss_pred EEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC
Q 024705 123 VEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD 161 (264)
Q Consensus 123 ~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~ 161 (264)
.+..+..|+||||++.+++..++..| +|+++|.+....
T Consensus 4 ~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~ 41 (209)
T 3cwq_A 4 TVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRS 41 (209)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCH
T ss_pred EEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCC
Confidence 44467799999999999999999889 999999987643
No 384
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.59 E-value=0.0014 Score=60.10 Aligned_cols=36 Identities=25% Similarity=0.238 Sum_probs=30.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHHhhcCC-eEEEEecC
Q 024705 122 IVEIYGREASGKTTLALHVIKEAQKLGG-YCAYLDVE 157 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~~~~~g~-~v~~~~~e 157 (264)
.++|.|++|+|||+++..++..+...+. .++.+...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T 83 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPT 83 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCc
Confidence 8999999999999999999998887776 56666543
No 385
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.59 E-value=0.0028 Score=53.02 Aligned_cols=41 Identities=22% Similarity=0.209 Sum_probs=31.5
Q ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCe-EEEEe
Q 024705 115 GGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGY-CAYLD 155 (264)
Q Consensus 115 gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~-v~~~~ 155 (264)
+.-.+|.++.|.|++||||||++..++..+...|.. +.+..
T Consensus 22 ~~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~r 63 (236)
T 3lv8_A 22 SNAMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTR 63 (236)
T ss_dssp ----CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeec
Confidence 444568899999999999999999999888777777 54443
No 386
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=96.57 E-value=0.0023 Score=59.61 Aligned_cols=59 Identities=20% Similarity=0.197 Sum_probs=47.8
Q ss_pred CCCCccccCcHHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC
Q 024705 96 RRGPVISTGSLKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (264)
Q Consensus 96 ~~~~~i~tG~~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~ 159 (264)
...+.+.||+..+|.++. +-+|+-..|.|++|+|||+++.+++.+. ...-++|....+.
T Consensus 200 ~~~epl~TGirvID~l~P---igrGqr~~Ifg~~g~GKT~l~~~ia~~~--~~~v~V~~~iGER 258 (578)
T 3gqb_A 200 DPNTPFLTGMRILDVLFP---VAMGGTAAIPGPFGSGKSVTQQSLAKWS--NADVVVYVGSGER 258 (578)
T ss_dssp CSCSEECCSCHHHHTTSC---EETTCEEEECCCTTSCHHHHHHHHHHHS--SCSEEEEEEEEEC
T ss_pred cCCCcccccchhhhhccc---ccCCCEEeeeCCCCccHHHHHHHHHhcc--CCCEEEEEEeccc
Confidence 457899999999999886 7899999999999999999999887753 3445666654443
No 387
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.55 E-value=0.0017 Score=51.49 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=21.7
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHH
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
+.+++|.|++||||||++..++...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999887754
No 388
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.55 E-value=0.0016 Score=53.27 Aligned_cols=27 Identities=30% Similarity=0.279 Sum_probs=23.1
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
.+|-.++|.|++||||||++..++...
T Consensus 3 ~~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 3 SKKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GGCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 345689999999999999999988765
No 389
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.55 E-value=0.0015 Score=58.10 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=22.7
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHh
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
+++| +++|+|||||||||++-.++..+-
T Consensus 21 ~~~g-~~~i~G~NGaGKTTll~ai~~al~ 48 (365)
T 3qf7_A 21 FQSG-ITVVEGPNGAGKSSLFEAISFALF 48 (365)
T ss_dssp CCSE-EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456 899999999999999887776543
No 390
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.54 E-value=0.0016 Score=53.33 Aligned_cols=30 Identities=27% Similarity=0.290 Sum_probs=23.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEec
Q 024705 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~ 156 (264)
+++|.|||||||+|.+..++... .+.++++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~-----g~~~ist 31 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK-----GFVHIST 31 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-----CCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----CCeEEcH
Confidence 47899999999999999998754 2456664
No 391
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.53 E-value=0.0019 Score=49.98 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=20.8
Q ss_pred cEEEEEecCCCChHHHHHHHHHHH
Q 024705 121 RIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
.+++|+||||+||||++..+...+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999988887654
No 392
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.53 E-value=0.0025 Score=54.26 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=29.7
Q ss_pred HHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 108 LDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 108 LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
|...+. |..++...++|+||||+|||+|+..++...
T Consensus 93 l~~~l~-~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 93 FLGWAT-KKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHT-TCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHh-CCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 677777 544767789999999999999999888753
No 393
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.52 E-value=0.0014 Score=52.89 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q 024705 122 IVEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~ 143 (264)
.++|+||+|+||||++..+...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5889999999999999888765
No 394
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.52 E-value=0.0018 Score=54.17 Aligned_cols=27 Identities=26% Similarity=0.238 Sum_probs=23.4
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
.++-.++|.|+|||||||++..++...
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 466789999999999999999998654
No 395
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.52 E-value=0.0016 Score=52.94 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHHHHHHHH
Q 024705 122 IVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
.++|.|++||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999987754
No 396
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.52 E-value=0.00045 Score=62.59 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=21.2
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHH
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
+.++.|.||||+|||||+..++...
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Confidence 3399999999999999988887643
No 397
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.51 E-value=0.0035 Score=51.54 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=30.0
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHHhhcCC-eEEEE
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGG-YCAYL 154 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~-~v~~~ 154 (264)
+|.++.|.|++||||||.+..++..+...|. .+.+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~ 38 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT 38 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee
Confidence 4789999999999999999999988877776 45443
No 398
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.50 E-value=0.0018 Score=50.51 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=21.3
Q ss_pred cEEEEEecCCCChHHHHHHHHHHH
Q 024705 121 RIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
+++.|.|++||||||++..++..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999888754
No 399
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.47 E-value=0.002 Score=51.91 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=21.4
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHH
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~ 143 (264)
+..+++|.|++||||||++..++..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999888764
No 400
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.46 E-value=0.00037 Score=60.72 Aligned_cols=36 Identities=14% Similarity=0.085 Sum_probs=23.5
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEE
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCA 152 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~ 152 (264)
+.+|+++.|.||||+|||||+..++.......+.+.
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~ 205 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 205 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhccccccccccee
Confidence 557899999999999999999888766544444443
No 401
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.45 E-value=0.0016 Score=50.76 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=20.9
Q ss_pred cEEEEEecCCCChHHHHHHHHHHH
Q 024705 121 RIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
.++.|.|++||||||++..++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999988754
No 402
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.45 E-value=0.0016 Score=61.17 Aligned_cols=26 Identities=38% Similarity=0.506 Sum_probs=24.2
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
+|..++|+||||+||||++..++...
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999999998876
No 403
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.45 E-value=0.0034 Score=57.73 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=24.3
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhh
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQK 146 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~ 146 (264)
.....++|+||||+|||+++..++..+..
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 34556899999999999999999988753
No 404
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.45 E-value=0.001 Score=53.59 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=23.8
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHH
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~ 143 (264)
+++|..++|.|+||+|||||+..++..
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 678999999999999999998887643
No 405
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=96.44 E-value=0.098 Score=38.72 Aligned_cols=86 Identities=14% Similarity=0.169 Sum_probs=70.5
Q ss_pred CcEEEEE-ecCCCChHHHHHHHHHHHhh--cCCeEEEEecCCCCCHHHHHHcCCCccceeEeCCCCHHHHHHHHHHHhhc
Q 024705 120 GRIVEIY-GREASGKTTLALHVIKEAQK--LGGYCAYLDVENALDPSLAEAMGIDAENLLIAQPDSAENLLSVVDTLTKS 196 (264)
Q Consensus 120 G~~~~I~-G~~GsGKTtl~~~l~~~~~~--~g~~v~~~~~e~~~~~~~~~~~g~~~~~l~~~~~~~~ee~~~~i~~~~~~ 196 (264)
+.++++. -.+|.|-..++.-+...... .++.++|+..............|++++++.+.++.+..+.++.+++.++.
T Consensus 2 ~~l~Ell~~~~g~~e~~lLlp~L~~l~~~~~~r~ilwi~pp~~~~~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrs 81 (119)
T 1ofu_X 2 AAFSELSLSGLPGHCLTLLAPILRELSEEQDARWLTLIAPPASLTHEWLRRAGLNRERILLLQAKDNAAALALSCEALRL 81 (119)
T ss_dssp CEEEEEEEESCHHHHHHHHHHHHHHHTTCSSSSEEEEESCCTTSCHHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHH
T ss_pred CceEEEeecCCCccHHHHHHHHHHHhcccccCccEEEECCCCCCCHHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhc
Confidence 3456654 45788877777777777765 78899999877666666777899999999999999999999999999999
Q ss_pred CCccEEEEc
Q 024705 197 GSIDVIVVD 205 (264)
Q Consensus 197 ~~~~~vvID 205 (264)
+.+..|+..
T Consensus 82 g~~~aVl~w 90 (119)
T 1ofu_X 82 GRSHTVVSW 90 (119)
T ss_dssp TCEEEEEEC
T ss_pred CCccEEEEC
Confidence 999988875
No 406
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.43 E-value=0.0023 Score=53.04 Aligned_cols=28 Identities=32% Similarity=0.313 Sum_probs=23.7
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
..+|.++.|.|++||||||++..++..+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4678899999999999999998887644
No 407
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.43 E-value=0.0018 Score=52.72 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=21.6
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHH
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~ 143 (264)
.|..++|.||+|+||||++..++..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3677999999999999999988763
No 408
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.42 E-value=0.0038 Score=50.72 Aligned_cols=38 Identities=24% Similarity=0.116 Sum_probs=30.6
Q ss_pred cEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC
Q 024705 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~ 159 (264)
-.+.|+|++|+|||||+..++...... .++..++.+..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~ 68 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLGDVV 68 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEecCCC
Confidence 468899999999999999999876544 67777776654
No 409
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.42 E-value=0.0026 Score=56.01 Aligned_cols=33 Identities=30% Similarity=0.409 Sum_probs=26.4
Q ss_pred cEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCC
Q 024705 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN 158 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~ 158 (264)
.+++|+||+||||||++..++... + +.+++.|.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l---~--~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF---N--GEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT---T--EEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc---C--Cceecccc
Confidence 479999999999999999998754 2 45666654
No 410
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.40 E-value=0.0031 Score=52.26 Aligned_cols=40 Identities=25% Similarity=0.268 Sum_probs=33.2
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhh-cCCeEEEEecC
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAYLDVE 157 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~-~g~~v~~~~~e 157 (264)
.+|.++.|.|++||||||++..++..+.. .|..+.++..|
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~tre 59 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTRE 59 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEES
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeC
Confidence 46889999999999999999999988877 77777763433
No 411
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.38 E-value=0.0021 Score=52.34 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q 024705 122 IVEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~ 143 (264)
.++|.|+|||||||++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988764
No 412
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.38 E-value=0.0022 Score=53.55 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=21.9
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHH
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
.-++.|.||+||||||++..++..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999988755
No 413
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.38 E-value=0.0022 Score=52.26 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=20.8
Q ss_pred CCcEEEEEecCCCChHHHHHHHHH
Q 024705 119 KGRIVEIYGREASGKTTLALHVIK 142 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~ 142 (264)
++-++.|.|++||||||++..++.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999988865
No 414
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.38 E-value=0.0024 Score=51.16 Aligned_cols=32 Identities=34% Similarity=0.417 Sum_probs=25.1
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecC
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e 157 (264)
..++.|.|++||||||++..++.. | +.+++.+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~----g--~~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW----G--YPVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT----T--CCEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC----C--CEEEccc
Confidence 468999999999999999888763 3 4466654
No 415
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.34 E-value=0.0026 Score=49.45 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHHHHHHHH
Q 024705 122 IVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
.+.|.|++||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999888754
No 416
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.34 E-value=0.0017 Score=61.70 Aligned_cols=39 Identities=15% Similarity=0.045 Sum_probs=29.5
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEe
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~ 155 (264)
+..|..++|+||||+||||++..++..........+++.
T Consensus 57 i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~ 95 (604)
T 3k1j_A 57 ANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVF 95 (604)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEE
T ss_pred ccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEe
Confidence 446689999999999999999999886654443444443
No 417
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.33 E-value=0.0029 Score=52.33 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=22.8
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
++..++|.|++||||||++..++...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998765
No 418
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.29 E-value=0.0032 Score=55.62 Aligned_cols=34 Identities=24% Similarity=0.162 Sum_probs=26.7
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEe
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~ 155 (264)
++..++|+||||+|||+++..++..+ +.+.+.++
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~---~~~~~~~~ 83 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL---DVPFTMAD 83 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEec
Confidence 45678999999999999999998765 45555554
No 419
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.26 E-value=0.0027 Score=56.47 Aligned_cols=25 Identities=36% Similarity=0.671 Sum_probs=22.1
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHH
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIK 142 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~ 142 (264)
+.+| +++|+||||+||||++..+..
T Consensus 24 ~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 24 FPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp CCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred EcCC-eEEEECCCCCChhHHHHHHHH
Confidence 5577 999999999999999888875
No 420
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.24 E-value=0.0028 Score=57.50 Aligned_cols=28 Identities=18% Similarity=0.241 Sum_probs=23.8
Q ss_pred CCCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 117 LPKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 117 l~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
+.+|.+++|.||||+||||++..+...+
T Consensus 23 ~~~~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 23 FGESNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 4568999999999999999988887643
No 421
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.23 E-value=0.003 Score=51.91 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=20.4
Q ss_pred EEEEEecCCCChHHHHHHHHHHH
Q 024705 122 IVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
+++|.|++||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999988755
No 422
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=96.22 E-value=0.016 Score=52.46 Aligned_cols=37 Identities=22% Similarity=0.167 Sum_probs=29.1
Q ss_pred CCcEEEEEecCCCChHHHH-HHHHHHHhhcCCeEEEEe
Q 024705 119 KGRIVEIYGREASGKTTLA-LHVIKEAQKLGGYCAYLD 155 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~-~~l~~~~~~~g~~v~~~~ 155 (264)
+|+.+++.||+|+|||..+ ..++..+...|.+++|+.
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~ 38 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILA 38 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 4788999999999999975 445546667777888886
No 423
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=96.21 E-value=0.0041 Score=53.16 Aligned_cols=37 Identities=22% Similarity=0.397 Sum_probs=32.8
Q ss_pred EEEEE-ecCCCChHHHHHHHHHHHhhcCCeEEEEecCC
Q 024705 122 IVEIY-GREASGKTTLALHVIKEAQKLGGYCAYLDVEN 158 (264)
Q Consensus 122 ~~~I~-G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~ 158 (264)
++.|+ +..|+||||++.+++..++..|.+|+++|.+.
T Consensus 6 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 6 VIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43 (286)
T ss_dssp EEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 45554 67999999999999999999999999999987
No 424
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=96.20 E-value=0.029 Score=54.03 Aligned_cols=96 Identities=23% Similarity=0.215 Sum_probs=55.9
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHHHHh-hcCCeEEEEecCCCCCHHHHHH------cCCCcccee---------EeC
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIKEAQ-KLGGYCAYLDVENALDPSLAEA------MGIDAENLL---------IAQ 179 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~~~~-~~g~~v~~~~~e~~~~~~~~~~------~g~~~~~l~---------~~~ 179 (264)
++..|..+++.||+|||||+.+...+.... ..+++++|+.--........+. +|+...... ...
T Consensus 42 ~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~~~ 121 (715)
T 2va8_A 42 GLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDAWLKN 121 (715)
T ss_dssp TTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECCSCSSSCCGGGGG
T ss_pred HhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchhhcCC
Confidence 466788999999999999998866665544 3688898886322111111111 232211000 000
Q ss_pred ----CCCHHHHHHHHHHHhh-cCCccEEEEcCccccc
Q 024705 180 ----PDSAENLLSVVDTLTK-SGSIDVIVVDSVAALI 211 (264)
Q Consensus 180 ----~~~~ee~~~~i~~~~~-~~~~~~vvIDsl~~~~ 211 (264)
..+.+.+...+..... -.++++||||.+..+.
T Consensus 122 ~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~ 158 (715)
T 2va8_A 122 YDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLN 158 (715)
T ss_dssp CSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGG
T ss_pred CCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcC
Confidence 1245655555544211 2467899999998764
No 425
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.15 E-value=0.0036 Score=50.95 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHH
Q 024705 122 IVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
.++|.|++||||||++..++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999988754
No 426
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.14 E-value=0.00029 Score=58.67 Aligned_cols=33 Identities=12% Similarity=0.128 Sum_probs=24.6
Q ss_pred cEEEEEecCCCChHHHHHHHHHHHhhcCCeEEE
Q 024705 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAY 153 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~ 153 (264)
+++.|.|||||||||++..++....+..+.+.+
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~ 60 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHF 60 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC--
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCCeEEE
Confidence 456799999999999999988877655444433
No 427
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.13 E-value=0.0032 Score=55.41 Aligned_cols=37 Identities=14% Similarity=0.345 Sum_probs=28.1
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCC
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENA 159 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~ 159 (264)
.++.+++|+||+|||||||+..++..+ + .-+++.|..
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l---~--~eiIs~Ds~ 74 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHF---P--LEVINSDKM 74 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTS---C--EEEEECCSS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHC---C--CcEEccccc
Confidence 456799999999999999999988643 3 345665543
No 428
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.12 E-value=0.0037 Score=50.20 Aligned_cols=23 Identities=43% Similarity=0.514 Sum_probs=20.7
Q ss_pred EEEEEecCCCChHHHHHHHHHHH
Q 024705 122 IVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
++.|.|++||||||++..++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 78999999999999999987754
No 429
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.09 E-value=0.0046 Score=58.85 Aligned_cols=39 Identities=28% Similarity=0.263 Sum_probs=32.8
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEec
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~ 156 (264)
.+|.++.|.|.+||||||++..++..+...|..+++++.
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDg 88 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 88 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEech
Confidence 368899999999999999999999887666777777753
No 430
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=96.09 E-value=0.0063 Score=55.13 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=33.2
Q ss_pred cEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCC
Q 024705 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN 158 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~ 158 (264)
..++|.|++|+|||+++..++.++...|..++++|...
T Consensus 54 ~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkg 91 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNG 91 (437)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 46899999999999999889988888899999988643
No 431
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.07 E-value=0.0038 Score=49.78 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.2
Q ss_pred EEEEEecCCCChHHHHHHHHHHH
Q 024705 122 IVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
.++|.|++|+|||||+..++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999887753
No 432
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=96.06 E-value=0.0069 Score=49.34 Aligned_cols=34 Identities=21% Similarity=0.164 Sum_probs=29.4
Q ss_pred EEEEEe-cCCCChHHHHHHHHHHHhhcCCeEEEEe
Q 024705 122 IVEIYG-REASGKTTLALHVIKEAQKLGGYCAYLD 155 (264)
Q Consensus 122 ~~~I~G-~~GsGKTtl~~~l~~~~~~~g~~v~~~~ 155 (264)
.+.|++ .+|+||||++.+++..++..|.+|++++
T Consensus 3 ~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~d 37 (224)
T 1byi_A 3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK 37 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence 355555 5899999999999999999999999986
No 433
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.05 E-value=0.0046 Score=50.24 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=21.1
Q ss_pred cEEEEEecCCCChHHHHHHHHHHHh
Q 024705 121 RIVEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
.+++|+||||+||||++-.+...+-
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999888765543
No 434
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.01 E-value=0.0068 Score=49.33 Aligned_cols=37 Identities=22% Similarity=0.174 Sum_probs=28.7
Q ss_pred cEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCC
Q 024705 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN 158 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~ 158 (264)
-.++|.|++|+|||||+..++...... .++..+..+.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~ 75 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLKDK-YKIACIAGDV 75 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTTT-CCEEEEEEET
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEECCC
Confidence 458889999999999999999876544 5566666544
No 435
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.00 E-value=0.0056 Score=57.75 Aligned_cols=39 Identities=21% Similarity=0.202 Sum_probs=32.4
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHHhhcC-CeEEEEecC
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEAQKLG-GYCAYLDVE 157 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g-~~v~~~~~e 157 (264)
+|.++.|.|.+||||||++..++..+...| ..+.+++.+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D 434 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGD 434 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcH
Confidence 467899999999999999999998876666 667777754
No 436
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.98 E-value=0.0038 Score=49.96 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q 024705 122 IVEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~ 143 (264)
.++|.|++|+|||||+..++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999998874
No 437
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.97 E-value=0.0047 Score=49.15 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=21.1
Q ss_pred CCcEEEEEecCCCChHHHHHHHHH
Q 024705 119 KGRIVEIYGREASGKTTLALHVIK 142 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~ 142 (264)
.|.-++|.|++|+||||++..++.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 356799999999999999998876
No 438
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=95.96 E-value=0.0037 Score=55.43 Aligned_cols=39 Identities=23% Similarity=0.256 Sum_probs=33.7
Q ss_pred EEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCC
Q 024705 123 VEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALD 161 (264)
Q Consensus 123 ~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~ 161 (264)
.+..+..|+||||++.+++..++..|.+|+++|.|....
T Consensus 5 av~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~ 43 (361)
T 3pg5_A 5 SFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCN 43 (361)
T ss_dssp EBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCT
T ss_pred EEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCC
Confidence 344478999999999999999999999999999987643
No 439
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.96 E-value=0.011 Score=54.15 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=18.5
Q ss_pred EEEEEecCCCChHHHHHHHHH
Q 024705 122 IVEIYGREASGKTTLALHVIK 142 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~ 142 (264)
.++|+|+||+|||||...+..
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEE
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 689999999999999888753
No 440
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.96 E-value=0.0047 Score=54.72 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=23.4
Q ss_pred CCCCcE--EEEEecCCCChHHHHHHHHHHHh
Q 024705 117 LPKGRI--VEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 117 l~~G~~--~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
+++|+. +.|+|++|+||||++..++..+.
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 345555 99999999999999998887653
No 441
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=95.95 E-value=0.022 Score=51.96 Aligned_cols=92 Identities=17% Similarity=0.186 Sum_probs=52.1
Q ss_pred CCcEEEEEecCCCChHH-HHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHc-CCCc----ccee-------EeCCCCHHH
Q 024705 119 KGRIVEIYGREASGKTT-LALHVIKEAQKLGGYCAYLDVENALDPSLAEAM-GIDA----ENLL-------IAQPDSAEN 185 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTt-l~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~-g~~~----~~l~-------~~~~~~~ee 185 (264)
.++++++.||+|||||+ ++..++..+...+.+++|+.--........+.+ |+.. .... .....+...
T Consensus 18 ~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~~v~~~~~~~~~~~~~~~~i~~~t~~~ 97 (451)
T 2jlq_A 18 KKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRGLPIRYQTPAVKSDHTGREIVDLMCHAT 97 (451)
T ss_dssp TTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCEEECCTTCSCCCCSSCCEEEEEHHH
T ss_pred cCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhcCceeeeeeccccccCCCCceEEEEChHH
Confidence 46788999999999999 577777666677778888873221111222333 2221 0000 000012333
Q ss_pred HHHHHHHHhhcCCccEEEEcCcccc
Q 024705 186 LLSVVDTLTKSGSIDVIVVDSVAAL 210 (264)
Q Consensus 186 ~~~~i~~~~~~~~~~~vvIDsl~~~ 210 (264)
+...+.....-.+++++|||....+
T Consensus 98 l~~~l~~~~~l~~~~~iViDEah~~ 122 (451)
T 2jlq_A 98 FTTRLLSSTRVPNYNLIVMDEAHFT 122 (451)
T ss_dssp HHHHHHHCSCCCCCSEEEEETTTCC
T ss_pred HHHHhhCcccccCCCEEEEeCCccC
Confidence 4433333222357899999998855
No 442
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.94 E-value=0.006 Score=57.21 Aligned_cols=38 Identities=29% Similarity=0.282 Sum_probs=33.1
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecC
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e 157 (264)
|.++.+.|++||||||++..++..+...|..+.+++.|
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D 409 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGD 409 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECch
Confidence 78899999999999999999998877778778888755
No 443
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.92 E-value=0.0043 Score=53.15 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=20.0
Q ss_pred cEEEEEecCCCChHHHHHHHHH
Q 024705 121 RIVEIYGREASGKTTLALHVIK 142 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~ 142 (264)
.+++|.|+|||||||++..++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999998876
No 444
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.91 E-value=0.0048 Score=53.74 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=21.7
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHH
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
+.+++|+||+||||||++..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4688999999999999999998743
No 445
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.87 E-value=0.0051 Score=48.11 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=20.6
Q ss_pred CCcEEEEEecCCCChHHHHHHHHH
Q 024705 119 KGRIVEIYGREASGKTTLALHVIK 142 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~ 142 (264)
+|..++|.|++|+|||||+..++.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 567799999999999999988865
No 446
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.87 E-value=0.0054 Score=49.51 Aligned_cols=35 Identities=17% Similarity=0.372 Sum_probs=26.8
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCC
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVEN 158 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~ 158 (264)
...++.|+|++||||||++..++... | +.+++.+.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l---g--~~vid~D~ 45 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY---G--AHVVNVDR 45 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH---C--CEEEEHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc---C--CEEEECcH
Confidence 45689999999999999998887642 3 45666554
No 447
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.85 E-value=0.0052 Score=53.77 Aligned_cols=32 Identities=28% Similarity=0.516 Sum_probs=25.3
Q ss_pred cEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecC
Q 024705 121 RIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVE 157 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e 157 (264)
.+++|+||+||||||++..++... + ..+++.|
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l---~--~~iis~D 37 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL---P--CELISVD 37 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS---C--EEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc---C--CcEEecc
Confidence 579999999999999999998743 3 4556654
No 448
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.84 E-value=0.006 Score=53.05 Aligned_cols=25 Identities=36% Similarity=0.436 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHH
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~ 143 (264)
...+++|+||+|||||||+..++..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 3568999999999999999999875
No 449
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.83 E-value=0.0055 Score=52.37 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=20.0
Q ss_pred CcEEEEEecCCCChHHHHHHHH
Q 024705 120 GRIVEIYGREASGKTTLALHVI 141 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~ 141 (264)
..+++|.|++||||||++..++
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999887
No 450
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.82 E-value=0.0092 Score=56.83 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=31.7
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHhh-cCCeEEEEecCC
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAYLDVEN 158 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~~-~g~~v~~~~~e~ 158 (264)
+.+++|.||||+|||+++..++..+.. .+.++++...-.
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn 234 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSN 234 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcH
Confidence 458899999999999999999888776 567787776543
No 451
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.82 E-value=0.0071 Score=51.74 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=21.2
Q ss_pred EEEEecCCCChHHHHHHHHHHHh
Q 024705 123 VEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 123 ~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
++|+||+|+|||+++..++..+.
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHhc
Confidence 89999999999999999988764
No 452
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=95.76 E-value=0.0066 Score=53.27 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=20.9
Q ss_pred cEEEEEecCCCChHHHHHHHHHHHh
Q 024705 121 RIVEIYGREASGKTTLALHVIKEAQ 145 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~~~~ 145 (264)
.+++|+||||+||||++-.+...+.
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~~~l~ 48 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAILVGLY 48 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc
Confidence 5889999999999999888765443
No 453
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.75 E-value=0.0084 Score=49.35 Aligned_cols=29 Identities=31% Similarity=0.434 Sum_probs=25.3
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhh
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQK 146 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~ 146 (264)
.+|.++.+.|++||||||.+..++..+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46899999999999999999998887643
No 454
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.74 E-value=0.011 Score=48.15 Aligned_cols=35 Identities=23% Similarity=0.163 Sum_probs=28.4
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEe
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLD 155 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~ 155 (264)
|.++.|-|+.||||||.+..++..+. .|.++++..
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~~ 36 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV-KDYDVIMTR 36 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEee
Confidence 56899999999999999988887774 466776554
No 455
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.73 E-value=0.0077 Score=54.11 Aligned_cols=28 Identities=25% Similarity=0.240 Sum_probs=25.7
Q ss_pred CCCCCCcEEEEEecCCCChHHHHHHHHH
Q 024705 115 GGLPKGRIVEIYGREASGKTTLALHVIK 142 (264)
Q Consensus 115 gGl~~G~~~~I~G~~GsGKTtl~~~l~~ 142 (264)
|-+.+|..+.|.|+||+|||||...+..
T Consensus 15 g~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 15 GRPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 5788899999999999999999998887
No 456
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=95.68 E-value=0.037 Score=56.04 Aligned_cols=101 Identities=16% Similarity=0.184 Sum_probs=59.7
Q ss_pred HHHHHHhcCCCCCCCcEEEEEecCCCChHHHHHHHHHHHhh----cCCeEEEEecCCCCCH-------HHHHHcCCCccc
Q 024705 106 LKLDLALGIGGLPKGRIVEIYGREASGKTTLALHVIKEAQK----LGGYCAYLDVENALDP-------SLAEAMGIDAEN 174 (264)
Q Consensus 106 ~~LD~~l~~gGl~~G~~~~I~G~~GsGKTtl~~~l~~~~~~----~g~~v~~~~~e~~~~~-------~~~~~~g~~~~~ 174 (264)
..|...|. .+-....++.|+|+.|+||||||.+++..... -...+.|++....... .....++.....
T Consensus 134 ~~l~~~l~-~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (1249)
T 3sfz_A 134 HAIQQKLW-KLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESF 212 (1249)
T ss_dssp HHHHHHHH-TTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTT
T ss_pred HHHHHHHh-hccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhccc
Confidence 34555553 22234578999999999999999988765321 2356778886554322 122223322111
Q ss_pred eeEeCCCCHHHHHHHHHHHhhcC-CccEEEEcCcc
Q 024705 175 LLIAQPDSAENLLSVVDTLTKSG-SIDVIVVDSVA 208 (264)
Q Consensus 175 l~~~~~~~~ee~~~~i~~~~~~~-~~~~vvIDsl~ 208 (264)
.-..+.+.+++...++...... +.-++|+|.+.
T Consensus 213 -~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~ 246 (1249)
T 3sfz_A 213 -SQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW 246 (1249)
T ss_dssp -CSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCC
T ss_pred -ccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCC
Confidence 0112445677777777665432 35689999875
No 457
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.67 E-value=0.015 Score=47.05 Aligned_cols=35 Identities=20% Similarity=0.187 Sum_probs=30.1
Q ss_pred EEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEec
Q 024705 122 IVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDV 156 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~ 156 (264)
++.|-|..||||||.+..++..+...|.++++...
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tre 36 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 57889999999999999999888888888877653
No 458
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.64 E-value=0.008 Score=49.82 Aligned_cols=26 Identities=31% Similarity=0.290 Sum_probs=22.7
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
+|.++.|.|++||||||++..++..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999888764
No 459
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.59 E-value=0.0036 Score=54.39 Aligned_cols=25 Identities=20% Similarity=0.126 Sum_probs=21.7
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHH
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
|..++|+||||+|||+++..++..+
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4569999999999999999988754
No 460
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.58 E-value=0.0067 Score=46.91 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=18.9
Q ss_pred EEEEEecCCCChHHHHHHHHH
Q 024705 122 IVEIYGREASGKTTLALHVIK 142 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~ 142 (264)
.++|.|++|+|||||+..++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999999998875
No 461
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.58 E-value=0.029 Score=56.41 Aligned_cols=44 Identities=32% Similarity=0.296 Sum_probs=32.5
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHH--Hhh-cCCeEEEEecCCCCCH
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKE--AQK-LGGYCAYLDVENALDP 162 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~--~~~-~g~~v~~~~~e~~~~~ 162 (264)
...++.|+|+.|+||||||..++.. ... -...++|++.......
T Consensus 149 ~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~ 195 (1221)
T 1vt4_I 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195 (1221)
T ss_dssp SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSH
T ss_pred CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCH
Confidence 4679999999999999999998753 222 2345889887665443
No 462
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.52 E-value=0.0091 Score=53.76 Aligned_cols=25 Identities=20% Similarity=0.472 Sum_probs=22.0
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHH
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
..+++|.||+||||||++..++...
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3578999999999999999998765
No 463
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=95.50 E-value=0.011 Score=53.03 Aligned_cols=41 Identities=10% Similarity=0.060 Sum_probs=33.7
Q ss_pred CCcEEEEE-ecCCCChHHHHHHHHHHHh------hcCCeEEEEecCCC
Q 024705 119 KGRIVEIY-GREASGKTTLALHVIKEAQ------KLGGYCAYLDVENA 159 (264)
Q Consensus 119 ~G~~~~I~-G~~GsGKTtl~~~l~~~~~------~~g~~v~~~~~e~~ 159 (264)
++.++.++ |..|+||||++.+++..++ ..|.+|+++|.|..
T Consensus 107 ~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q 154 (398)
T 3ez2_A 107 EAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQ 154 (398)
T ss_dssp SCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTT
T ss_pred CCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence 34555555 7799999999999999988 46899999999864
No 464
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.37 E-value=0.0069 Score=47.75 Aligned_cols=21 Identities=43% Similarity=0.553 Sum_probs=18.7
Q ss_pred EEEEEecCCCChHHHHHHHHH
Q 024705 122 IVEIYGREASGKTTLALHVIK 142 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~ 142 (264)
-++|.|++|+|||||+..++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999988875
No 465
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.36 E-value=0.067 Score=41.79 Aligned_cols=20 Identities=35% Similarity=0.371 Sum_probs=16.5
Q ss_pred EEEEEecCCCChHHHHHHHH
Q 024705 122 IVEIYGREASGKTTLALHVI 141 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~ 141 (264)
-++|.|++|+|||||+..+.
T Consensus 16 ki~vvG~~~~GKssL~~~l~ 35 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIY 35 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999984443
No 466
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.35 E-value=0.006 Score=53.12 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=20.2
Q ss_pred EEEEecCCCChHHHHHHHHHHH
Q 024705 123 VEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 123 ~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
++|+||||+|||+++..++..+
T Consensus 48 vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 48 VLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp EEEECCGGGCTTHHHHHHHHHS
T ss_pred EEEECCCCccHHHHHHHHHHhC
Confidence 9999999999999999988755
No 467
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.25 E-value=0.011 Score=57.91 Aligned_cols=40 Identities=18% Similarity=0.138 Sum_probs=32.3
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHhh-cCCeEEEEecCCC
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAYLDVENA 159 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~~-~g~~v~~~~~e~~ 159 (264)
+.+++|.||||+|||+++..++..+.. .+.++++......
T Consensus 375 ~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~ 415 (802)
T 2xzl_A 375 RPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNV 415 (802)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHH
Confidence 558899999999999999888887765 5778888775443
No 468
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=95.24 E-value=0.046 Score=44.39 Aligned_cols=56 Identities=20% Similarity=0.298 Sum_probs=34.9
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHHhhcCCeEEEEecCCCCCHHHHHHcCCCccce
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEAQKLGGYCAYLDVENALDPSLAEAMGIDAENL 175 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~~~~g~~v~~~~~e~~~~~~~~~~~g~~~~~l 175 (264)
.|--+++|+|.+||||++++..+....... .+..++.-.......++..|.+.+.+
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~--~~~vv~msD~iK~~~a~~~gl~~~~~ 64 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGAD--VCAVLRLSGPLKEQYAQEHGLNFQRL 64 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTT--TEEEECTHHHHHHHHHHTTTCCCC--
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCC--CceEEEccHHHHHHHHHHcCCCchhh
Confidence 356799999999999999887765544211 24445443332234566778776654
No 469
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.23 E-value=0.014 Score=54.18 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=32.6
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHHhh-cC-CeEEEEecCC
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEAQK-LG-GYCAYLDVEN 158 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~~~-~g-~~v~~~~~e~ 158 (264)
.|..+.|.|.+||||||++..++..+.. .| ..+.|++.|.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 5678999999999999999999998865 44 4556777665
No 470
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.23 E-value=0.02 Score=56.17 Aligned_cols=39 Identities=18% Similarity=0.178 Sum_probs=31.5
Q ss_pred CcEEEEEecCCCChHHHHHHHHHHHhh-cCCeEEEEecCC
Q 024705 120 GRIVEIYGREASGKTTLALHVIKEAQK-LGGYCAYLDVEN 158 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~~~~-~g~~v~~~~~e~ 158 (264)
+.+++|.||||+|||+++..++..+.. .+.++++...-.
T Consensus 371 ~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn 410 (800)
T 2wjy_A 371 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSN 410 (800)
T ss_dssp SSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcH
Confidence 458899999999999999999888776 567777776443
No 471
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.19 E-value=0.011 Score=46.44 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=19.6
Q ss_pred cEEEEEecCCCChHHHHHHHHH
Q 024705 121 RIVEIYGREASGKTTLALHVIK 142 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~ 142 (264)
-.+++.|++|+|||||+..++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4588999999999999999875
No 472
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.16 E-value=0.01 Score=54.15 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHHHHHHH
Q 024705 122 IVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
.++++||||+|||+++..++..+
T Consensus 52 ~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999998765
No 473
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=95.14 E-value=0.045 Score=52.79 Aligned_cols=96 Identities=21% Similarity=0.240 Sum_probs=55.2
Q ss_pred CCCCCcEEEEEecCCCChHHHHHHHHH-HHhhcCCeEEEEecCCCCCHHHHHH------cCCCcccee----E-----eC
Q 024705 116 GLPKGRIVEIYGREASGKTTLALHVIK-EAQKLGGYCAYLDVENALDPSLAEA------MGIDAENLL----I-----AQ 179 (264)
Q Consensus 116 Gl~~G~~~~I~G~~GsGKTtl~~~l~~-~~~~~g~~v~~~~~e~~~~~~~~~~------~g~~~~~l~----~-----~~ 179 (264)
++..|..+++.||+|+|||+.+...+. .+...+.+++|+.--........++ +|+....+. . ..
T Consensus 35 ~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~~~~ 114 (720)
T 2zj8_A 35 GILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEWLGK 114 (720)
T ss_dssp TGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCGGGGG
T ss_pred HhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCccccccCC
Confidence 455688999999999999998754444 3344688899987433332222222 232211000 0 00
Q ss_pred ----CCCHHHHHHHHHHHhh-cCCccEEEEcCccccc
Q 024705 180 ----PDSAENLLSVVDTLTK-SGSIDVIVVDSVAALI 211 (264)
Q Consensus 180 ----~~~~ee~~~~i~~~~~-~~~~~~vvIDsl~~~~ 211 (264)
..+++.+...++.... -.++++||||.+..+.
T Consensus 115 ~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~ 151 (720)
T 2zj8_A 115 YDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIG 151 (720)
T ss_dssp CSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGG
T ss_pred CCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccC
Confidence 1245555555444211 1367899999999775
No 474
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=95.13 E-value=0.0093 Score=53.51 Aligned_cols=41 Identities=7% Similarity=0.069 Sum_probs=26.1
Q ss_pred CCcEEEEE-ecCCCChHHHHHHHHHHHh------hcCCeEEEEecCCC
Q 024705 119 KGRIVEIY-GREASGKTTLALHVIKEAQ------KLGGYCAYLDVENA 159 (264)
Q Consensus 119 ~G~~~~I~-G~~GsGKTtl~~~l~~~~~------~~g~~v~~~~~e~~ 159 (264)
.+.++.|+ |..|+||||++.+++..++ ..|.+|+++|.|..
T Consensus 110 ~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~ 157 (403)
T 3ez9_A 110 SPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQ 157 (403)
T ss_dssp SCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSS
T ss_pred CceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence 34555555 7899999999999999988 57999999999864
No 475
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.12 E-value=0.021 Score=54.19 Aligned_cols=37 Identities=22% Similarity=0.172 Sum_probs=28.6
Q ss_pred CCcEEEEEecCCCChHHHHHHHHHHHhh----cCCeEEEEe
Q 024705 119 KGRIVEIYGREASGKTTLALHVIKEAQK----LGGYCAYLD 155 (264)
Q Consensus 119 ~G~~~~I~G~~GsGKTtl~~~l~~~~~~----~g~~v~~~~ 155 (264)
.+.+++|.|+||+||||++..++..+.. .+.+++...
T Consensus 163 ~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~A 203 (608)
T 1w36_D 163 TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAA 203 (608)
T ss_dssp TBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEB
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEe
Confidence 3678999999999999999888877763 344565554
No 476
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.11 E-value=0.013 Score=47.59 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=20.6
Q ss_pred CcEEEEEecCCCChHHHHHHHHHH
Q 024705 120 GRIVEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~ 143 (264)
+.++.|.|++||||||++..++..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999888764
No 477
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.05 E-value=0.011 Score=51.05 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=17.9
Q ss_pred EEEEecCCCChHHHHHHHHHH
Q 024705 123 VEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 123 ~~I~G~~GsGKTtl~~~l~~~ 143 (264)
++|.||||+|||||+..+...
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 589999999999999987654
No 478
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.03 E-value=0.014 Score=44.17 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q 024705 122 IVEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~ 143 (264)
-+++.|++|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999988764
No 479
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.03 E-value=0.0055 Score=56.87 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=22.7
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
..|.-++|+||||+|||+++..++..+
T Consensus 39 ~~~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 39 LSGESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp HHTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hcCCeeEeecCchHHHHHHHHHHHHHH
Confidence 345679999999999999999988755
No 480
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.02 E-value=0.014 Score=44.38 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q 024705 122 IVEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~ 143 (264)
-+++.|++|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999888764
No 481
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.02 E-value=0.014 Score=44.57 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q 024705 122 IVEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~ 143 (264)
-+++.|++|+|||||+..+...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999998764
No 482
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.00 E-value=0.014 Score=44.23 Aligned_cols=21 Identities=38% Similarity=0.504 Sum_probs=18.6
Q ss_pred EEEEEecCCCChHHHHHHHHH
Q 024705 122 IVEIYGREASGKTTLALHVIK 142 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~ 142 (264)
-+++.|++|+|||||+..+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 378999999999999998875
No 483
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.96 E-value=0.0072 Score=50.85 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=22.7
Q ss_pred CCCcEEEEEecCCCChHHHHHHHHHHH
Q 024705 118 PKGRIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 118 ~~G~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
.++.++.|.|++||||||++..++..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 477899999999999999998877643
No 484
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.84 E-value=0.016 Score=45.64 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=20.4
Q ss_pred CcEEEEEecCCCChHHHHHHHHHH
Q 024705 120 GRIVEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~ 143 (264)
.-.+++.|++|+|||||+..+...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999888763
No 485
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.84 E-value=0.017 Score=43.97 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q 024705 122 IVEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~ 143 (264)
-+++.|++|+|||||+..+...
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999888754
No 486
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.84 E-value=0.017 Score=44.11 Aligned_cols=20 Identities=20% Similarity=0.481 Sum_probs=18.2
Q ss_pred EEEEecCCCChHHHHHHHHH
Q 024705 123 VEIYGREASGKTTLALHVIK 142 (264)
Q Consensus 123 ~~I~G~~GsGKTtl~~~l~~ 142 (264)
+++.|++|+|||||+..+..
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 78999999999999998875
No 487
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.83 E-value=0.015 Score=44.68 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=18.9
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q 024705 122 IVEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~ 143 (264)
-++|.|++|+|||||+..+...
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 3789999999999999888653
No 488
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.81 E-value=0.021 Score=50.63 Aligned_cols=24 Identities=33% Similarity=0.416 Sum_probs=20.6
Q ss_pred cEEEEEecCCCChHHHHHHHHHHH
Q 024705 121 RIVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
.+++|+||||+|||+++-.+...+
T Consensus 26 gl~vi~G~NGaGKT~ileAI~~~l 49 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIFEAVFFAL 49 (371)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999988877643
No 489
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.79 E-value=0.017 Score=44.02 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=19.1
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q 024705 122 IVEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~ 143 (264)
-+++.|++|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999888764
No 490
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=94.77 E-value=0.041 Score=49.87 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=18.3
Q ss_pred EEEEEecCCCChHHHHHHHHH
Q 024705 122 IVEIYGREASGKTTLALHVIK 142 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~ 142 (264)
.++|.|+||+|||||...++.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~ 25 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAG 25 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEE
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 588999999999999888753
No 491
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=94.76 E-value=0.059 Score=48.31 Aligned_cols=28 Identities=29% Similarity=0.184 Sum_probs=23.0
Q ss_pred cEEEEEecCCCChHHHHHHHHHHHhhcC
Q 024705 121 RIVEIYGREASGKTTLALHVIKEAQKLG 148 (264)
Q Consensus 121 ~~~~I~G~~GsGKTtl~~~l~~~~~~~g 148 (264)
-.+.+.|.+++|||||+..+.......|
T Consensus 12 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g 39 (405)
T 2c78_A 12 VNVGTIGHVDHGKTTLTAALTYVAAAEN 39 (405)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHSC
T ss_pred EEEEEEcCCCCCHHHHHHHHHhhhhhcC
Confidence 4588999999999999999987654443
No 492
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.76 E-value=0.018 Score=44.05 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q 024705 122 IVEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~ 143 (264)
-+++.|++|+|||||+..+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999888764
No 493
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.74 E-value=0.018 Score=44.47 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=19.2
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q 024705 122 IVEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~ 143 (264)
-+++.|++|+|||||+..+...
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988753
No 494
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.73 E-value=0.018 Score=43.96 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=19.8
Q ss_pred EEEEEecCCCChHHHHHHHHHHH
Q 024705 122 IVEIYGREASGKTTLALHVIKEA 144 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~~ 144 (264)
-+++.|++|+|||||+..+...-
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999987643
No 495
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.73 E-value=0.017 Score=44.22 Aligned_cols=19 Identities=37% Similarity=0.368 Sum_probs=17.5
Q ss_pred EEEEecCCCChHHHHHHHH
Q 024705 123 VEIYGREASGKTTLALHVI 141 (264)
Q Consensus 123 ~~I~G~~GsGKTtl~~~l~ 141 (264)
+++.|++|+|||||+..+.
T Consensus 5 i~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999998885
No 496
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.72 E-value=0.02 Score=43.61 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=18.8
Q ss_pred EEEEecCCCChHHHHHHHHHH
Q 024705 123 VEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 123 ~~I~G~~GsGKTtl~~~l~~~ 143 (264)
+++.|++|+|||+|+..+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999998764
No 497
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.72 E-value=0.017 Score=44.14 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=18.7
Q ss_pred EEEEEecCCCChHHHHHHHHH
Q 024705 122 IVEIYGREASGKTTLALHVIK 142 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~ 142 (264)
-+++.|++|+|||||+..+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999988875
No 498
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.71 E-value=0.013 Score=50.51 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=20.8
Q ss_pred CcEEEEEecCCCChHHHHHHHHHH
Q 024705 120 GRIVEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 120 G~~~~I~G~~GsGKTtl~~~l~~~ 143 (264)
+..+.|.|+||+|||||+..+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 347999999999999999998764
No 499
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.70 E-value=0.019 Score=44.46 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.3
Q ss_pred EEEEEecCCCChHHHHHHHHHH
Q 024705 122 IVEIYGREASGKTTLALHVIKE 143 (264)
Q Consensus 122 ~~~I~G~~GsGKTtl~~~l~~~ 143 (264)
-+++.|++|+|||||+..+...
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999888764
No 500
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.68 E-value=0.017 Score=44.02 Aligned_cols=19 Identities=32% Similarity=0.316 Sum_probs=17.3
Q ss_pred EEEEecCCCChHHHHHHHH
Q 024705 123 VEIYGREASGKTTLALHVI 141 (264)
Q Consensus 123 ~~I~G~~GsGKTtl~~~l~ 141 (264)
+++.|++|+|||||+..+.
T Consensus 5 i~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEESTTSSHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHc
Confidence 7899999999999998875
Done!