BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024706
(264 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WBJ|D Chain D, Tcr Complex
pdb|2WBJ|H Chain H, Tcr Complex
Length = 279
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 9/119 (7%)
Query: 14 LFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVV----HEIGSS---V 66
+R ++L++TSN YE+G+++D FL ++L + H SS
Sbjct: 58 WYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDSSFYIC 117
Query: 67 DYRKMTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEA--GPQEVEVVMGRKLQVPLGANG 123
R +TS F G G+ + + +++ A P E E+ +K + A G
Sbjct: 118 SARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATG 176
>pdb|1YMM|E Chain E, TcrHLA-Dr2bMBP-Peptide Complex
Length = 249
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 9/119 (7%)
Query: 14 LFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERCVV----HEIGSS---V 66
+R ++L++TSN YE+G+++D FL ++L + H SS
Sbjct: 35 WYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDSSFYIC 94
Query: 67 DYRKMTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEA--GPQEVEVVMGRKLQVPLGANG 123
R +TS F G G+ + + +++ A P E E+ +K + A G
Sbjct: 95 SARDLTSGANNEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATG 153
>pdb|4DZB|B Chain B, Mucosal-Associated Invariant T Cell Receptor,
Valpha7.2jalpha33-Vbeta2
Length = 246
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 7/117 (5%)
Query: 14 LFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLP-----FISTLKERCVVHEIGSSVDY 68
+R ++L++TSN YE+G+++D FL +STL E S
Sbjct: 35 WYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDSSFYIC 94
Query: 69 RKMTSAQQGFYFVGKGSSEVMKQKFRDLIGEHEA--GPQEVEVVMGRKLQVPLGANG 123
TS G F G G+ + + +++ A P E E+ +K + A G
Sbjct: 95 SARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATG 151
>pdb|3MFG|B Chain B, Crystal Structure Of Toxic Shock Syndrome Toxin 1
(Tsst-1) In Complex With The Human T Cell Receptor Beta
Chain Vbeta2.1 (Ep-8)
Length = 118
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 14 LFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFL 47
+R ++L++TSN YE+G+++D FL
Sbjct: 35 WYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFL 68
>pdb|3O4L|E Chain E, Genetic And Structural Basis For Selection Of A
Ubiquitous T Cell Receptor Deployed In Epstein-Barr
Virus
Length = 245
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 14 LFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFL 47
+R ++L++TSN YE+G+++D FL
Sbjct: 35 WYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFL 68
>pdb|3O6F|D Chain D, Crystal Structure Of A Human Autoimmune Tcr Ms2-3c8
Bound To Mhc Class Ii Self-Ligand MbpHLA-Dr4
pdb|3O6F|H Chain H, Crystal Structure Of A Human Autoimmune Tcr Ms2-3c8
Bound To Mhc Class Ii Self-Ligand MbpHLA-Dr4
pdb|3T0E|D Chain D, Crystal Structure Of A Complete Ternary Complex Of T
Cell Receptor, Peptide-Mhc And Cd4
Length = 245
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 14 LFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFL 47
+R ++L++TSN YE+G+++D FL
Sbjct: 33 WYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFL 66
>pdb|2NWI|A Chain A, Crystal Structure Of Protein Af1396 From Archaeoglobus
Fulgidus, Pfam Duf98
pdb|2NWI|B Chain B, Crystal Structure Of Protein Af1396 From Archaeoglobus
Fulgidus, Pfam Duf98
pdb|2NWI|C Chain C, Crystal Structure Of Protein Af1396 From Archaeoglobus
Fulgidus, Pfam Duf98
pdb|2NWI|D Chain D, Crystal Structure Of Protein Af1396 From Archaeoglobus
Fulgidus, Pfam Duf98
pdb|2NWI|E Chain E, Crystal Structure Of Protein Af1396 From Archaeoglobus
Fulgidus, Pfam Duf98
pdb|2NWI|F Chain F, Crystal Structure Of Protein Af1396 From Archaeoglobus
Fulgidus, Pfam Duf98
Length = 172
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 19/39 (48%)
Query: 203 ISDAQQMAPRTSSRSMRNDEADLCVDNELGFAKDRTISR 241
I + R R R +EADL + ELG A R ISR
Sbjct: 101 IMRKHNIEARREIRWSRVEEADLALAKELGIADRRVISR 139
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,030,358
Number of Sequences: 62578
Number of extensions: 273768
Number of successful extensions: 549
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 542
Number of HSP's gapped (non-prelim): 7
length of query: 264
length of database: 14,973,337
effective HSP length: 97
effective length of query: 167
effective length of database: 8,903,271
effective search space: 1486846257
effective search space used: 1486846257
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)