Query 024706
Match_columns 264
No_of_seqs 145 out of 912
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 13:01:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024706.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024706hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2w58_A DNAI, primosome compone 97.3 0.00022 7.4E-09 59.4 4.8 60 9-69 136-202 (202)
2 2qgz_A Helicase loader, putati 96.7 0.0011 3.8E-08 60.0 4.0 63 9-72 235-303 (308)
3 3ec2_A DNA replication protein 95.8 0.0078 2.7E-07 49.0 4.3 59 4-62 115-179 (180)
4 3ec2_A DNA replication protein 92.6 0.2 6.9E-06 40.4 5.9 56 141-197 93-148 (180)
5 2w58_A DNAI, primosome compone 91.8 0.094 3.2E-06 43.1 3.0 59 140-198 107-165 (202)
6 2kjq_A DNAA-related protein; s 90.3 0.33 1.1E-05 38.8 4.8 52 144-198 79-131 (149)
7 2qgz_A Helicase loader, putati 89.1 0.48 1.7E-05 42.4 5.4 75 122-198 182-264 (308)
8 2kjq_A DNAA-related protein; s 74.5 1.9 6.4E-05 34.2 2.9 31 8-38 100-131 (149)
9 1l8q_A Chromosomal replication 68.6 9.7 0.00033 33.3 6.5 55 141-196 91-145 (324)
10 3co5_A Putative two-component 68.3 1.5 5.2E-05 34.1 1.0 33 11-45 92-127 (143)
11 3co5_A Putative two-component 65.0 12 0.00039 28.9 5.6 52 141-196 69-120 (143)
12 3n70_A Transport activator; si 64.9 4.1 0.00014 31.6 2.9 41 11-51 93-135 (145)
13 3bos_A Putative DNA replicatio 48.5 40 0.0014 27.1 6.4 68 124-195 83-151 (242)
14 3n70_A Transport activator; si 45.2 13 0.00045 28.6 2.8 53 141-198 70-122 (145)
15 2z4s_A Chromosomal replication 43.6 40 0.0014 31.3 6.3 48 148-196 194-241 (440)
16 2bjv_A PSP operon transcriptio 42.1 18 0.00061 30.5 3.4 22 22-43 141-162 (265)
17 3bos_A Putative DNA replicatio 36.1 30 0.001 27.8 3.8 47 8-64 123-173 (242)
18 2z4s_A Chromosomal replication 32.7 26 0.00089 32.5 3.1 28 10-37 215-242 (440)
19 1l8q_A Chromosomal replication 31.2 33 0.0011 29.8 3.4 46 9-64 118-166 (324)
20 3t15_A Ribulose bisphosphate c 29.5 14 0.00049 32.2 0.7 25 8-32 126-165 (293)
21 1ojl_A Transcriptional regulat 28.3 31 0.0011 30.2 2.7 36 10-45 112-160 (304)
22 1ny5_A Transcriptional regulat 27.6 42 0.0014 30.5 3.5 38 10-47 247-297 (387)
23 1ojl_A Transcriptional regulat 26.7 1.4E+02 0.0047 25.9 6.7 52 141-196 90-151 (304)
24 3cf0_A Transitional endoplasmi 26.1 24 0.00082 30.7 1.5 22 11-32 139-164 (301)
25 1g5t_A COB(I)alamin adenosyltr 25.4 51 0.0018 27.6 3.4 27 12-38 141-169 (196)
26 3ewt_E Tumor necrosis factor r 23.4 60 0.0021 18.4 2.3 22 1-22 3-24 (25)
27 3dzd_A Transcriptional regulat 21.9 63 0.0022 29.1 3.5 38 10-47 238-288 (368)
28 2r8r_A Sensor protein; KDPD, P 20.5 1.1E+02 0.0038 26.2 4.6 51 140-191 75-126 (228)
29 1w4r_A Thymidine kinase; type 20.5 1.5E+02 0.0052 24.7 5.4 43 139-189 82-124 (195)
30 4b4t_J 26S protease regulatory 20.4 38 0.0013 31.7 1.8 61 10-70 271-345 (405)
No 1
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.29 E-value=0.00022 Score=59.40 Aligned_cols=60 Identities=12% Similarity=0.034 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHCCCEEEEcCCCCchhhccC-------CCcccchhhHHHHHHhccEEEEeCCCCCcC
Q 024706 9 LILNRLFRHLFNNGVILVSTSNRAPDNLYER-------GLQRDLFLPFISTLKERCVVHEIGSSVDYR 69 (264)
Q Consensus 9 miL~rLf~~Lf~~GvvlVaTSN~~P~dLy~n-------gl~r~~FlPfI~~L~~~~~V~~ld~~~DYR 69 (264)
.++..+++.....+..+|+|||.+|++|... +.......++++.|..+|.+++++| .|||
T Consensus 136 ~ll~~~l~~~~~~~~~~i~tsn~~~~~l~~~~~~~~~~~~~~~~~~~~~~Rl~~~~~~~~~~g-~~~R 202 (202)
T 2w58_A 136 DVFGPILQYRMFENLPTFFTSNFDMQQLAHHLTYSQRGEEEKVKAARIMERIRYLAYPIEITG-PNRR 202 (202)
T ss_dssp TTHHHHHHHHHHTTCCEEEEESSCHHHHHHHSCCCC-----CCHHHHHHHHHHHHEEEEECCS-CCCC
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHhhhccCcchhHHHHHHHHHHHHhceEEeecC-CCCC
Confidence 4667777777788999999999999999762 2345568889999999999999986 9998
No 2
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.67 E-value=0.0011 Score=59.97 Aligned_cols=63 Identities=10% Similarity=-0.012 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHCCCEEEEcCCCCchhhccC------CCcccchhhHHHHHHhccEEEEeCCCCCcCCCC
Q 024706 9 LILNRLFRHLFNNGVILVSTSNRAPDNLYER------GLQRDLFLPFISTLKERCVVHEIGSSVDYRKMT 72 (264)
Q Consensus 9 miL~rLf~~Lf~~GvvlVaTSN~~P~dLy~n------gl~r~~FlPfI~~L~~~~~V~~ld~~~DYR~~~ 72 (264)
.+|..+++.....+..+|+|||.+|++|... |.......+.++.|..+|.+++++| .+||+..
T Consensus 235 ~ll~~ll~~r~~~~~~~IitSN~~~~~l~~~~~~~~~g~~~~~~~~i~dRl~~~~~~i~l~g-~s~R~~~ 303 (308)
T 2qgz_A 235 EVLQVILQYRMLEELPTFFTSNYSFADLERKWATIKGSDETWQAKRVMERVRYLAREFHLEG-ANRRLEH 303 (308)
T ss_dssp TTHHHHHHHHHHHTCCEEEEESSCHHHHHTTCC--------CCCCSHHHHHHHHEEEEECCS-CCCC---
T ss_pred HHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHhhccCccchhhhHHHHHHHHHhCEEEEecC-Ccccccc
Confidence 3677778777777889999999999999874 4344456679999999999999987 9999854
No 3
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.79 E-value=0.0078 Score=49.03 Aligned_cols=59 Identities=14% Similarity=0.060 Sum_probs=42.4
Q ss_pred ChhhHHHHHHHHHHHHHCCCEEEEcCCCCchhhccCCCc-----ccch-hhHHHHHHhccEEEEe
Q 024706 4 DVADALILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQ-----RDLF-LPFISTLKERCVVHEI 62 (264)
Q Consensus 4 DIaDAmiL~rLf~~Lf~~GvvlVaTSN~~P~dLy~ngl~-----r~~F-lPfI~~L~~~~~V~~l 62 (264)
|......|..+++.+.+.|..+|.|||.+|++|+++|+. ++++ ...++.|...|.++++
T Consensus 115 ~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~~~~~~~~~~~~l~~~~~~~i~~rl~~~~~~i~~ 179 (180)
T 3ec2_A 115 SDWQRELISYIITYRYNNLKSTIITTNYSLQREEESSVRISADLASRLGENVVSKIYEMNELLVI 179 (180)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC---CHHHHHHHHHHHHCHHHHHHHHHHEEEECC
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEcCCChhHhhhhccchhhHHHHHHHHHHHHHHHhcCeeeee
Confidence 344556788889999999999999999999998875431 2333 4456788888988875
No 4
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.57 E-value=0.2 Score=40.42 Aligned_cols=56 Identities=11% Similarity=-0.035 Sum_probs=43.6
Q ss_pred cHHHHhcccCeEEEcCCCCCCCCChhHHHHHHHHHHHHHhcCCeEEEEecCChhhhc
Q 024706 141 DYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLF 197 (264)
Q Consensus 141 DYl~La~~f~ti~i~~VP~l~~~~~~~arRFI~LID~lYd~~vkL~~sa~~~~~~Lf 197 (264)
+.+....+.+.++|+++-.. ..+......|..+++..|+.++.+++++..+++++.
T Consensus 93 ~~~~~~~~~~llilDE~~~~-~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~~~~ 148 (180)
T 3ec2_A 93 KFLKTVLNSPVLVLDDLGSE-RLSDWQRELISYIITYRYNNLKSTIITTNYSLQREE 148 (180)
T ss_dssp HHHHHHHTCSEEEEETCSSS-CCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSCC--
T ss_pred HHHHHhcCCCEEEEeCCCCC-cCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChhHhh
Confidence 66777778999999996432 234445567788999999999999999999998875
No 5
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.78 E-value=0.094 Score=43.08 Aligned_cols=59 Identities=12% Similarity=0.051 Sum_probs=41.6
Q ss_pred ccHHHHhcccCeEEEcCCCCCCCCChhHHHHHHHHHHHHHhcCCeEEEEecCChhhhcc
Q 024706 140 ADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLFN 198 (264)
Q Consensus 140 ~DYl~La~~f~ti~i~~VP~l~~~~~~~arRFI~LID~lYd~~vkL~~sa~~~~~~Lf~ 198 (264)
.+.+....+.++++|++|-........+..-|-.+++..|..+.++++++..+|+++..
T Consensus 107 ~~~~~~~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l~~ 165 (202)
T 2w58_A 107 NEKLDYIKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLAH 165 (202)
T ss_dssp HHHHHHHHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHHHH
T ss_pred HHHHHHhcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHH
Confidence 34555566778999999955433332222234458999999999999999999999875
No 6
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=90.31 E-value=0.33 Score=38.79 Aligned_cols=52 Identities=15% Similarity=0.116 Sum_probs=40.6
Q ss_pred HHhcccCeEEEcCCCCCCCCChhHHHHHHHHHHHHHhcCCe-EEEEecCChhhhcc
Q 024706 144 GLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRAR-LLCTAEGSPFQLFN 198 (264)
Q Consensus 144 ~La~~f~ti~i~~VP~l~~~~~~~arRFI~LID~lYd~~vk-L~~sa~~~~~~Lf~ 198 (264)
++..+.+.++|+++-.+ .......+..+|+.+|+.+.. +++++..+|+++..
T Consensus 79 ~~~~~~~lLilDE~~~~---~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l~~ 131 (149)
T 2kjq_A 79 DAAFEAEYLAVDQVEKL---GNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVI 131 (149)
T ss_dssp GGGGGCSEEEEESTTCC---CSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTSSC
T ss_pred HHHhCCCEEEEeCcccc---ChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHccc
Confidence 34567899999997654 333377799999999999887 99999888877653
No 7
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=89.13 E-value=0.48 Score=42.41 Aligned_cols=75 Identities=11% Similarity=0.042 Sum_probs=48.2
Q ss_pred CCeEEeeHHHHhcC---CC---CcccHHHHhcccCeEEEcCCCCCCCCChhHHHH-HH-HHHHHHHhcCCeEEEEecCCh
Q 024706 122 NGCAYFEFEELCDK---PL---GAADYFGLFKIFHTLALEGIPIFGLHNRTAAYR-FV-TLVDVMYENRARLLCTAEGSP 193 (264)
Q Consensus 122 ~~va~f~F~eLC~~---p~---~~~DYl~La~~f~ti~i~~VP~l~~~~~~~arR-FI-~LID~lYd~~vkL~~sa~~~~ 193 (264)
..+..+++.+|... .. ...+.+....+.++++|++|-..... ...+. +. .+++..|..+..+++++..+|
T Consensus 182 ~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~~~~--~~~~~~ll~~ll~~r~~~~~~~IitSN~~~ 259 (308)
T 2qgz_A 182 VSTTLLHFPSFAIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAEQAT--SWVRDEVLQVILQYRMLEELPTFFTSNYSF 259 (308)
T ss_dssp CCEEEEEHHHHHHHHHCCCC----CCTTHHHHTSSEEEEETCCC--------CTTTTHHHHHHHHHHHTCCEEEEESSCH
T ss_pred CcEEEEEHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCC--HHHHHHHHHHHHHHHHHCCCcEEEECCCCH
Confidence 34666776665431 11 12345566677899999999443222 12232 44 489999988999999999999
Q ss_pred hhhcc
Q 024706 194 FQLFN 198 (264)
Q Consensus 194 ~~Lf~ 198 (264)
++|..
T Consensus 260 ~~l~~ 264 (308)
T 2qgz_A 260 ADLER 264 (308)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 99885
No 8
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=74.54 E-value=1.9 Score=34.24 Aligned_cols=31 Identities=26% Similarity=0.330 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHCCCE-EEEcCCCCchhhcc
Q 024706 8 ALILNRLFRHLFNNGVI-LVSTSNRAPDNLYE 38 (264)
Q Consensus 8 AmiL~rLf~~Lf~~Gvv-lVaTSN~~P~dLy~ 38 (264)
...|-.+++.+.+.|.. +|.|||.+|++|..
T Consensus 100 ~~~l~~li~~~~~~g~~~iiits~~~p~~l~~ 131 (149)
T 2kjq_A 100 QALLFSIFNRFRNSGKGFLLLGSEYTPQQLVI 131 (149)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEESSCTTTSSC
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCCCHHHccc
Confidence 56677888888888875 88899999999864
No 9
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=68.62 E-value=9.7 Score=33.31 Aligned_cols=55 Identities=13% Similarity=0.376 Sum_probs=43.2
Q ss_pred cHHHHhcccCeEEEcCCCCCCCCChhHHHHHHHHHHHHHhcCCeEEEEecCChhhh
Q 024706 141 DYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQL 196 (264)
Q Consensus 141 DYl~La~~f~ti~i~~VP~l~~~~~~~arRFI~LID~lYd~~vkL~~sa~~~~~~L 196 (264)
.+.....+..+++|++|..+... ......|..+++.+++.+..+++++..++.++
T Consensus 91 ~~~~~~~~~~vL~iDEi~~l~~~-~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l 145 (324)
T 1l8q_A 91 EFRNMYKSVDLLLLDDVQFLSGK-ERTQIEFFHIFNTLYLLEKQIILASDRHPQKL 145 (324)
T ss_dssp HHHHHHHTCSEEEEECGGGGTTC-HHHHHHHHHHHHHHHHTTCEEEEEESSCGGGC
T ss_pred HHHHHhcCCCEEEEcCcccccCC-hHHHHHHHHHHHHHHHCCCeEEEEecCChHHH
Confidence 44544556889999999988542 24556788999999999999999999888754
No 10
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=68.26 E-value=1.5 Score=34.11 Aligned_cols=33 Identities=6% Similarity=-0.079 Sum_probs=21.6
Q ss_pred HHHHHHHHHH---CCCEEEEcCCCCchhhccCCCcccc
Q 024706 11 LNRLFRHLFN---NGVILVSTSNRAPDNLYERGLQRDL 45 (264)
Q Consensus 11 L~rLf~~Lf~---~GvvlVaTSN~~P~dLy~ngl~r~~ 45 (264)
...|++.|-+ .++.+|+|||.+|+++ ..| .++.
T Consensus 92 q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~-~~~-~~~~ 127 (143)
T 3co5_A 92 QTGITFIIGKAERCRVRVIASCSYAAGSD-GIS-CEEK 127 (143)
T ss_dssp HHHHHHHHHHHTTTTCEEEEEEEECTTTC---C-HHHH
T ss_pred HHHHHHHHHhCCCCCEEEEEecCCCHHHH-HhC-ccHH
Confidence 3445554443 4699999999999998 777 4443
No 11
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=64.96 E-value=12 Score=28.90 Aligned_cols=52 Identities=10% Similarity=0.066 Sum_probs=40.5
Q ss_pred cHHHHhcccCeEEEcCCCCCCCCChhHHHHHHHHHHHHHhcCCeEEEEecCChhhh
Q 024706 141 DYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQL 196 (264)
Q Consensus 141 DYl~La~~f~ti~i~~VP~l~~~~~~~arRFI~LID~lYd~~vkL~~sa~~~~~~L 196 (264)
..++.++ -.++||++|-.+ ..+...++..+++.-+..++++++++..+++++
T Consensus 69 ~~~~~a~-~~~l~lDei~~l---~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~ 120 (143)
T 3co5_A 69 ELLQKAE-GGVLYVGDIAQY---SRNIQTGITFIIGKAERCRVRVIASCSYAAGSD 120 (143)
T ss_dssp HHHHHTT-TSEEEEEECTTC---CHHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC
T ss_pred hHHHhCC-CCeEEEeChHHC---CHHHHHHHHHHHHhCCCCCEEEEEecCCCHHHH
Confidence 3455555 369999999888 445666677888888778899999999888776
No 12
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=64.93 E-value=4.1 Score=31.57 Aligned_cols=41 Identities=7% Similarity=-0.049 Sum_probs=29.8
Q ss_pred HHHHHHHHHHC--CCEEEEcCCCCchhhccCCCcccchhhHHH
Q 024706 11 LNRLFRHLFNN--GVILVSTSNRAPDNLYERGLQRDLFLPFIS 51 (264)
Q Consensus 11 L~rLf~~Lf~~--GvvlVaTSN~~P~dLy~ngl~r~~FlPfI~ 51 (264)
...|++.|-.. .+.+|+|||.+|+++-..|..++.+...+.
T Consensus 93 q~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~~~~~L~~rl~ 135 (145)
T 3n70_A 93 QYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYCFA 135 (145)
T ss_dssp HHHHHHHHHSSSCSSCEEEEESSCHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhcCCCEEEEEECCcCHHHHHHcCCCCHHHHHHhc
Confidence 45666666433 578999999999999888777766555444
No 13
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=48.55 E-value=40 Score=27.06 Aligned_cols=68 Identities=13% Similarity=0.215 Sum_probs=44.3
Q ss_pred eEEeeHHHHhcCCCCcccHHHHhcccCeEEEcCCCCCCCCChhHHHHHHHHHHHHHhcCCe-EEEEecCChhh
Q 024706 124 CAYFEFEELCDKPLGAADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRAR-LLCTAEGSPFQ 195 (264)
Q Consensus 124 va~f~F~eLC~~p~~~~DYl~La~~f~ti~i~~VP~l~~~~~~~arRFI~LID~lYd~~vk-L~~sa~~~~~~ 195 (264)
+.+++..++.... .+.+.-.....+++|+++-.+.... .....+..+++.+++.+.. +++++..+++.
T Consensus 83 ~~~~~~~~~~~~~---~~~~~~~~~~~vliiDe~~~~~~~~-~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~ 151 (242)
T 3bos_A 83 SFYIPLGIHASIS---TALLEGLEQFDLICIDDVDAVAGHP-LWEEAIFDLYNRVAEQKRGSLIVSASASPME 151 (242)
T ss_dssp EEEEEGGGGGGSC---GGGGTTGGGSSEEEEETGGGGTTCH-HHHHHHHHHHHHHHHHCSCEEEEEESSCTTT
T ss_pred EEEEEHHHHHHHH---HHHHHhccCCCEEEEeccccccCCH-HHHHHHHHHHHHHHHcCCCeEEEEcCCCHHH
Confidence 3455555544321 1222333667899999998874432 2366788999999998876 88888776653
No 14
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=45.21 E-value=13 Score=28.60 Aligned_cols=53 Identities=23% Similarity=0.216 Sum_probs=35.5
Q ss_pred cHHHHhcccCeEEEcCCCCCCCCChhHHHHHHHHHHHHHhcCCeEEEEecCChhhhcc
Q 024706 141 DYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQLFN 198 (264)
Q Consensus 141 DYl~La~~f~ti~i~~VP~l~~~~~~~arRFI~LID~lYd~~vkL~~sa~~~~~~Lf~ 198 (264)
..++.++. .++||++|..++. +...++..++ .-...++++++++..+++++-.
T Consensus 70 ~~~~~a~~-g~l~ldei~~l~~---~~q~~Ll~~l-~~~~~~~~~I~~t~~~~~~~~~ 122 (145)
T 3n70_A 70 DFIALAQG-GTLVLSHPEHLTR---EQQYHLVQLQ-SQEHRPFRLIGIGDTSLVELAA 122 (145)
T ss_dssp HHHHHHTT-SCEEEECGGGSCH---HHHHHHHHHH-HSSSCSSCEEEEESSCHHHHHH
T ss_pred cHHHHcCC-cEEEEcChHHCCH---HHHHHHHHHH-hhcCCCEEEEEECCcCHHHHHH
Confidence 34455543 6999999998854 3334444444 3344578999999999987753
No 15
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=43.60 E-value=40 Score=31.26 Aligned_cols=48 Identities=6% Similarity=0.159 Sum_probs=39.6
Q ss_pred ccCeEEEcCCCCCCCCChhHHHHHHHHHHHHHhcCCeEEEEecCChhhh
Q 024706 148 IFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEGSPFQL 196 (264)
Q Consensus 148 ~f~ti~i~~VP~l~~~~~~~arRFI~LID~lYd~~vkL~~sa~~~~~~L 196 (264)
...+++|++|-.+... ......|..+++.+++.+..+++++..++.++
T Consensus 194 ~~~vL~IDEi~~l~~~-~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l 241 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGK-TGVQTELFHTFNELHDSGKQIVICSDREPQKL 241 (440)
T ss_dssp TCSEEEEECGGGGSSC-HHHHHHHHHHHHHHHTTTCEEEEEESSCGGGC
T ss_pred CCCEEEEeCcccccCC-hHHHHHHHHHHHHHHHCCCeEEEEECCCHHHH
Confidence 6789999999888542 24556789999999999999999999888764
No 16
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=42.14 E-value=18 Score=30.49 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=17.6
Q ss_pred CCEEEEcCCCCchhhccCCCcc
Q 024706 22 GVILVSTSNRAPDNLYERGLQR 43 (264)
Q Consensus 22 GvvlVaTSN~~P~dLy~ngl~r 43 (264)
++.+|+|||..|+++...|-.+
T Consensus 141 ~~~iI~atn~~~~~~~~~~~~~ 162 (265)
T 2bjv_A 141 NVRLVCATNADLPAMVNEGTFR 162 (265)
T ss_dssp CCEEEEEESSCHHHHHHHTSSC
T ss_pred CeEEEEecCcCHHHHHHcCCcc
Confidence 5889999999999987655433
No 17
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=36.12 E-value=30 Score=27.77 Aligned_cols=47 Identities=11% Similarity=0.121 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHCCCE-EEEcCCCCchhhccCCCcccchhhHHHHHHhcc---EEEEeCC
Q 024706 8 ALILNRLFRHLFNNGVI-LVSTSNRAPDNLYERGLQRDLFLPFISTLKERC---VVHEIGS 64 (264)
Q Consensus 8 AmiL~rLf~~Lf~~Gvv-lVaTSN~~P~dLy~ngl~r~~FlPfI~~L~~~~---~V~~ld~ 64 (264)
.-.|..+++.+.+.|.+ +|.|||..|+++... .+.|..+| .++++..
T Consensus 123 ~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~----------~~~l~~r~~~~~~i~l~~ 173 (242)
T 3bos_A 123 EEAIFDLYNRVAEQKRGSLIVSASASPMEAGFV----------LPDLVSRMHWGLTYQLQP 173 (242)
T ss_dssp HHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCC----------CHHHHHHHHHSEEEECCC
T ss_pred HHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHh----------hhhhhhHhhcCceEEeCC
Confidence 34466777777888876 899999998765431 13456666 7888865
No 18
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=32.73 E-value=26 Score=32.54 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHCCCEEEEcCCCCchhhc
Q 024706 10 ILNRLFRHLFNNGVILVSTSNRAPDNLY 37 (264)
Q Consensus 10 iL~rLf~~Lf~~GvvlVaTSN~~P~dLy 37 (264)
.|-.+|+.+.+.|..+|.|||.+|.++.
T Consensus 215 ~l~~~l~~l~~~~~~iIitt~~~~~~l~ 242 (440)
T 2z4s_A 215 ELFHTFNELHDSGKQIVICSDREPQKLS 242 (440)
T ss_dssp HHHHHHHHHHTTTCEEEEEESSCGGGCS
T ss_pred HHHHHHHHHHHCCCeEEEEECCCHHHHH
Confidence 4556777888999999999999999873
No 19
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=31.22 E-value=33 Score=29.81 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHCCCEEEEcCCCCchhhccCCCcccchhhHHHHHHhcc---EEEEeCC
Q 024706 9 LILNRLFRHLFNNGVILVSTSNRAPDNLYERGLQRDLFLPFISTLKERC---VVHEIGS 64 (264)
Q Consensus 9 miL~rLf~~Lf~~GvvlVaTSN~~P~dLy~ngl~r~~FlPfI~~L~~~~---~V~~ld~ 64 (264)
-.+-.+|..+.+.|..+|.|||.+|.++.. +. +.|..+| .++++..
T Consensus 118 ~~l~~~l~~~~~~~~~iii~~~~~~~~l~~-------l~---~~L~sR~~~~~~i~l~~ 166 (324)
T 1l8q_A 118 IEFFHIFNTLYLLEKQIILASDRHPQKLDG-------VS---DRLVSRFEGGILVEIEL 166 (324)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSCGGGCTT-------SC---HHHHHHHHTSEEEECCC
T ss_pred HHHHHHHHHHHHCCCeEEEEecCChHHHHH-------hh---hHhhhcccCceEEEeCC
Confidence 345667788889999999999999998732 12 3344455 6677765
No 20
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=29.54 E-value=14 Score=32.20 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHH---------------HCCCEEEEcCCCC
Q 024706 8 ALILNRLFRHLF---------------NNGVILVSTSNRA 32 (264)
Q Consensus 8 AmiL~rLf~~Lf---------------~~GvvlVaTSN~~ 32 (264)
..+...|++.|= ..++++|+|||++
T Consensus 126 ~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~ 165 (293)
T 3t15_A 126 QMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDF 165 (293)
T ss_dssp HHHHHHHHHHHHCCC-----------CCCCCCEEEECSSC
T ss_pred HHHHHHHHHHhccccccccccccccccCCCcEEEEecCCc
Confidence 356666666652 2379999999975
No 21
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=28.31 E-value=31 Score=30.24 Aligned_cols=36 Identities=22% Similarity=0.271 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHC-------------CCEEEEcCCCCchhhccCCCcccc
Q 024706 10 ILNRLFRHLFNN-------------GVILVSTSNRAPDNLYERGLQRDL 45 (264)
Q Consensus 10 iL~rLf~~Lf~~-------------GvvlVaTSN~~P~dLy~ngl~r~~ 45 (264)
....|++.|-+. ++.+|+|+|..|+++...|-.|+.
T Consensus 112 ~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~ 160 (304)
T 1ojl_A 112 MQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQD 160 (304)
T ss_dssp HHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHH
T ss_pred HHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHH
Confidence 355666665443 388999999999998877665543
No 22
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=27.62 E-value=42 Score=30.50 Aligned_cols=38 Identities=21% Similarity=0.325 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHC-------------CCEEEEcCCCCchhhccCCCcccchh
Q 024706 10 ILNRLFRHLFNN-------------GVILVSTSNRAPDNLYERGLQRDLFL 47 (264)
Q Consensus 10 iL~rLf~~Lf~~-------------GvvlVaTSN~~P~dLy~ngl~r~~Fl 47 (264)
+..+|++.|-+. .+.+|+|||+.++++...|..|+.+.
T Consensus 247 ~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~ 297 (387)
T 1ny5_A 247 AQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLY 297 (387)
T ss_dssp HHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHH
T ss_pred HHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHH
Confidence 456677776653 57799999999999999888877654
No 23
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=26.70 E-value=1.4e+02 Score=25.94 Aligned_cols=52 Identities=15% Similarity=0.041 Sum_probs=35.7
Q ss_pred cHHHHhcccCeEEEcCCCCCCCCChhHHHHHHHHHHHHH----------hcCCeEEEEecCChhhh
Q 024706 141 DYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMY----------ENRARLLCTAEGSPFQL 196 (264)
Q Consensus 141 DYl~La~~f~ti~i~~VP~l~~~~~~~arRFI~LID~lY----------d~~vkL~~sa~~~~~~L 196 (264)
..++.|+. .++||++|-.|+. +...++..+++.-. ..++++++++..+++++
T Consensus 90 g~~~~a~~-g~L~LDEi~~l~~---~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~ 151 (304)
T 1ojl_A 90 GRFVEADG-GTLFLDEIGDISP---LMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEE 151 (304)
T ss_dssp CHHHHHTT-SEEEEESCTTCCH---HHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHH
T ss_pred CHHHhcCC-CEEEEeccccCCH---HHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHH
Confidence 45666654 7999999988843 44445556666542 34689999999887664
No 24
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=26.14 E-value=24 Score=30.68 Aligned_cols=22 Identities=18% Similarity=0.531 Sum_probs=15.4
Q ss_pred HHHHHHHHH----HCCCEEEEcCCCC
Q 024706 11 LNRLFRHLF----NNGVILVSTSNRA 32 (264)
Q Consensus 11 L~rLf~~Lf----~~GvvlVaTSN~~ 32 (264)
+..|+..|- ..+++||+|+|++
T Consensus 139 ~~~lL~~l~~~~~~~~v~vi~atn~~ 164 (301)
T 3cf0_A 139 INQILTEMDGMSTKKNVFIIGATNRP 164 (301)
T ss_dssp HHHHHHHHHSSCTTSSEEEEEEESCG
T ss_pred HHHHHHHhhcccCCCCEEEEEecCCc
Confidence 455666553 2478999999986
No 25
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=25.44 E-value=51 Score=27.62 Aligned_cols=27 Identities=7% Similarity=0.158 Sum_probs=21.5
Q ss_pred HHHHHHHHHC--CCEEEEcCCCCchhhcc
Q 024706 12 NRLFRHLFNN--GVILVSTSNRAPDNLYE 38 (264)
Q Consensus 12 ~rLf~~Lf~~--GvvlVaTSN~~P~dLy~ 38 (264)
..+|+.|-++ +.-||.|+|.+|++|..
T Consensus 141 ~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e 169 (196)
T 1g5t_A 141 EEVISALNARPGHQTVIITGRGCHRDILD 169 (196)
T ss_dssp HHHHHHHHTSCTTCEEEEECSSCCHHHHH
T ss_pred HHHHHHHHhCcCCCEEEEECCCCcHHHHH
Confidence 4577777654 78899999999999865
No 26
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=23.42 E-value=60 Score=18.44 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=15.5
Q ss_pred CCCChhhHHHHHHHHHHHHHCC
Q 024706 1 MVTDVADALILNRLFRHLFNNG 22 (264)
Q Consensus 1 ~V~DIaDAmiL~rLf~~Lf~~G 22 (264)
++.|||+.|-++.+=+---+.|
T Consensus 3 yIp~IAe~M~~~~Vk~fvR~~g 24 (25)
T 3ewt_E 3 YITTIAGVMTLSQVKGFVRKNG 24 (26)
T ss_pred chhHHHHHHhHHHHHHHHHHcC
Confidence 4789999999988655433333
No 27
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=21.87 E-value=63 Score=29.15 Aligned_cols=38 Identities=18% Similarity=0.334 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHC-------------CCEEEEcCCCCchhhccCCCcccchh
Q 024706 10 ILNRLFRHLFNN-------------GVILVSTSNRAPDNLYERGLQRDLFL 47 (264)
Q Consensus 10 iL~rLf~~Lf~~-------------GvvlVaTSN~~P~dLy~ngl~r~~Fl 47 (264)
+-.+|++.|-+. .+.+|+|||+.|.++-..|..|+.+.
T Consensus 238 ~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~ 288 (368)
T 3dzd_A 238 VQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLY 288 (368)
T ss_dssp HHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHH
T ss_pred HHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHH
Confidence 456677777554 46699999999999999998887653
No 28
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=20.55 E-value=1.1e+02 Score=26.18 Aligned_cols=51 Identities=8% Similarity=-0.029 Sum_probs=36.3
Q ss_pred ccHHH-HhcccCeEEEcCCCCCCCCChhHHHHHHHHHHHHHhcCCeEEEEecC
Q 024706 140 ADYFG-LFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTAEG 191 (264)
Q Consensus 140 ~DYl~-La~~f~ti~i~~VP~l~~~~~~~arRFI~LID~lYd~~vkL~~sa~~ 191 (264)
.|.-+ ++.+++.++|+.++..+....-.+.| ...|.++|++++.++.+...
T Consensus 75 ~~l~~~L~~~pdlvIVDElG~~~~~~~r~~~~-~qDV~~~l~sgidVitT~Nl 126 (228)
T 2r8r_A 75 MDLDALLKAAPSLVLVDELAHTNAPGSRHTKR-WQDIQELLAAGIDVYTTVNV 126 (228)
T ss_dssp CCHHHHHHHCCSEEEESCTTCBCCTTCSSSBH-HHHHHHHHHTTCEEEEEEEG
T ss_pred ccHHHHHhcCCCEEEEeCCCCCCcccchhHHH-HHHHHHHHcCCCCEEEEccc
Confidence 45544 56889999999988754433333444 44667799999999998874
No 29
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=20.49 E-value=1.5e+02 Score=24.67 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=33.2
Q ss_pred cccHHHHhcccCeEEEcCCCCCCCCChhHHHHHHHHHHHHHhcCCeEEEEe
Q 024706 139 AADYFGLFKIFHTLALEGIPIFGLHNRTAAYRFVTLVDVMYENRARLLCTA 189 (264)
Q Consensus 139 ~~DYl~La~~f~ti~i~~VP~l~~~~~~~arRFI~LID~lYd~~vkL~~sa 189 (264)
..|+.+..+.+++|+|+++--| .+ -+.++..|++.++++++++
T Consensus 82 ~~d~~~~~~~~DvIlIDEaQFf--k~------~ve~~~~L~~~gk~VI~~G 124 (195)
T 1w4r_A 82 LRDVAQEALGVAVIGIDEGQFF--PD------IVEFCEAMANAGKTVIVAA 124 (195)
T ss_dssp GGGGHHHHHTCSEEEESSGGGC--TT------HHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHhccCCCEEEEEchhhh--HH------HHHHHHHHHHCCCeEEEEe
Confidence 3566666788999999999776 22 3446688899999999976
No 30
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.40 E-value=38 Score=31.65 Aligned_cols=61 Identities=16% Similarity=0.264 Sum_probs=35.9
Q ss_pred HHHHHHHHHH----HCCCEEEEcCCCCc----hhhccCCCcccchhh------HHHHHHhccEEEEeCCCCCcCC
Q 024706 10 ILNRLFRHLF----NNGVILVSTSNRAP----DNLYERGLQRDLFLP------FISTLKERCVVHEIGSSVDYRK 70 (264)
Q Consensus 10 iL~rLf~~Lf----~~GvvlVaTSN~~P----~dLy~ngl~r~~FlP------fI~~L~~~~~V~~ld~~~DYR~ 70 (264)
++..|+..|= ..||+||+|+|++- .=|=++.+.+.-++| -.++|+.++.-++++.+.|+..
T Consensus 271 ~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~ 345 (405)
T 4b4t_J 271 TMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRK 345 (405)
T ss_dssp HHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHH
T ss_pred HHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHH
Confidence 4566666664 34789999999852 222345666666655 2345555555455555555543
Done!