BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024707
(264 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99250|SCN2A_HUMAN Sodium channel protein type 2 subunit alpha OS=Homo sapiens GN=SCN2A
PE=1 SV=3
Length = 2005
Score = 37.0 bits (84), Expect = 0.15, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 106 KKDDGNNATIDKKYRGAITVYEKFEGPSMVYKKNEGIDAVDEKTKGNATVDRKDKGTTPT 165
K+++ + I + YR + + +K + S +YKK++G + K + +D+ ++ +TP
Sbjct: 1903 KQEEVSAIIIQRAYRRYL-LKQKVKKVSSIYKKDKGKECDGTPIKEDTLIDKLNENSTPE 1961
Query: 166 DAKSTGSATSDDKYKDGGREKGKDYVFNDEKDKAGGRDTKQHRR 209
T S TS Y + + + + + + + G+D ++ ++
Sbjct: 1962 KTDMTPSTTSPPSYDSVTKPEKEKFEKDKSEKEDKGKDIRESKK 2005
>sp|B9DNE5|RUVA_STACT Holliday junction ATP-dependent DNA helicase RuvA OS=Staphylococcus
carnosus (strain TM300) GN=ruvA PE=3 SV=1
Length = 201
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 37/183 (20%)
Query: 55 SYIKDELKKDVVIIFPAEVVIPTKKDDGAAYKKEKDAGTTRKKDRDDKATNKKDDGNNAT 114
+YIK +L + +FP VV+ T +G Y+ + N+
Sbjct: 3 AYIKGKLSQ----LFPTHVVVET---NGVGYEIQTP--------------------NSYR 35
Query: 115 IDKKYRGAITVYEKFEGPSMVYKKNEGI--DAVDEKTKGNATVDRKDKGTTPTDAKSTGS 172
+ Y+ +T+Y S+V +++ + + E+ KG K G P A + +
Sbjct: 36 FQQYYQQEVTIYT-----SLVVREDAQLLYGFMSEEEKGMFLSLNKVTGIGPKSALAILA 90
Query: 173 ATSDDKYKDGGREKGKDYVFNDEKDKAGGRDTKQHRRDKDGSV-MRNENPKTYLNYDGRK 231
A++ ++ K G + + Y+ + G + +Q D G V + ENP+T LN++G +
Sbjct: 91 ASTPNEVKIGIENENETYL--TKFPGIGKKTARQIILDLKGKVQITEENPETLLNFEGSE 148
Query: 232 VNN 234
N
Sbjct: 149 SNQ 151
>sp|P04775|SCN2A_RAT Sodium channel protein type 2 subunit alpha OS=Rattus norvegicus
GN=Scn2a PE=1 SV=1
Length = 2005
Score = 35.4 bits (80), Expect = 0.42, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 51/104 (49%), Gaps = 1/104 (0%)
Query: 106 KKDDGNNATIDKKYRGAITVYEKFEGPSMVYKKNEGIDAVDEKTKGNATVDRKDKGTTPT 165
K+++ + I + YR + + +K + S +YKK++G + K + D+ ++ +TP
Sbjct: 1903 KQEEVSAIVIQRAYRRYL-LKQKVKKVSSIYKKDKGKEDEGTPIKEDIITDKLNENSTPE 1961
Query: 166 DAKSTGSATSDDKYKDGGREKGKDYVFNDEKDKAGGRDTKQHRR 209
T S TS Y + + + + + + + G+D ++ ++
Sbjct: 1962 KTDVTPSTTSPPSYDSVTKPEKEKFEKDKSEKEDKGKDIRESKK 2005
>sp|Q28298|RRBP1_CANFA Ribosome-binding protein 1 OS=Canis familiaris GN=RRBP1 PE=2 SV=1
Length = 1534
Score = 33.9 bits (76), Expect = 1.2, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 78 KKDDGAAYKKEKDAGTTRKKDRDDKATNKKDDGNNA-TIDKKYRGAITVYEKFEGPSMVY 136
KK +G + +K G + + D A N+ A KK GA +K EG
Sbjct: 350 KKAEGTPNQGKKAEGAPNQGKKTDGAPNQGKKSEGAPNQGKKVEGAQNQGKKVEGVQNQG 409
Query: 137 KKNEGIDAVDEKTKGNATVDRKDKGTTPTDAKSTGSATSDDK 178
KK EG +K +G ++ RK++GT K+ GS K
Sbjct: 410 KKAEGAQNQGKKAEGTSSQGRKEEGTPNLGKKAEGSPNQGKK 451
Score = 33.5 bits (75), Expect = 1.5, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 3/126 (2%)
Query: 78 KKDDGAAYKKEKDAGTTRKKDRDDKATN--KKDDGNNATIDKKYRGAITVYEKFEGPSMV 135
KK +GA + +K GT + + + A N KK DG KK GA +K EG
Sbjct: 340 KKVEGAQNQGKKAEGTPNQGKKAEGAPNQGKKTDGA-PNQGKKSEGAPNQGKKVEGAQNQ 398
Query: 136 YKKNEGIDAVDEKTKGNATVDRKDKGTTPTDAKSTGSATSDDKYKDGGREKGKDYVFNDE 195
KK EG+ +K +G +K +GT+ K G+ K + + K V ++
Sbjct: 399 GKKVEGVQNQGKKAEGAQNQGKKAEGTSSQGRKEEGTPNLGKKAEGSPNQGKKVEVVQNQ 458
Query: 196 KDKAGG 201
K G
Sbjct: 459 SKKVEG 464
>sp|Q99PL5|RRBP1_MOUSE Ribosome-binding protein 1 OS=Mus musculus GN=Rrbp1 PE=2 SV=2
Length = 1605
Score = 32.3 bits (72), Expect = 3.2, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 55/134 (41%), Gaps = 1/134 (0%)
Query: 78 KKDDGAAYKKEKDAGTTRKKDRDDKATNKKDDGNNA-TIDKKYRGAITVYEKFEGPSMVY 136
KK +GA + +K G + + + A N+ G A KK GA +K EG
Sbjct: 651 KKGEGAQNQGKKGEGPQNQAKKGEGAQNQGKKGEGAQNQGKKGEGAQNQGKKAEGVQSQS 710
Query: 137 KKNEGIDAVDEKTKGNATVDRKDKGTTPTDAKSTGSATSDDKYKDGGREKGKDYVFNDEK 196
KK EG +K GN +K +G + + K+ A K + + K ++
Sbjct: 711 KKGEGTQNQGKKGDGNPNQGKKGEGASNQNRKTDTVANQGTKQEGVSNQVKKSEGSPNQG 770
Query: 197 DKAGGRDTKQHRRD 210
KA G + ++D
Sbjct: 771 KKAEGAPNQGKKKD 784
Score = 32.0 bits (71), Expect = 4.3, Method: Composition-based stats.
Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 3/113 (2%)
Query: 78 KKDDGAAYKKEKDAGTTR--KKDRDDKATNKKDDGNNATIDKKYRGAITVYEKFEGPSMV 135
KK +GA + +K G KK + K N KK G +K EGP
Sbjct: 500 KKGEGAQNQAKKGEGVQNQAKKGVEGAQNQGKKGEANQNQAKKGEGGQNQTKKGEGPQNQ 559
Query: 136 YKKNEGIDAVDEKTKGNATVDRKDKGTTPTDAKSTGSATSDDKYKDGGREKGK 188
KK E D+K +G +K +GT+ K G A + K +G + +GK
Sbjct: 560 GKKGEAAQKQDKKIEGAQNQGKKPEGTSNQGKKGEG-AQNQGKKGEGAQNQGK 611
>sp|Q6D151|MSRA_ERWCT Peptide methionine sulfoxide reductase MsrA OS=Erwinia carotovora
subsp. atroseptica (strain SCRI 1043 / ATCC BAA-672)
GN=msrA PE=3 SV=1
Length = 212
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 12/82 (14%)
Query: 182 GGREKGKDYVFNDEKDKAGGRDTKQHRRDKDGSVMRNENPKTYLNYDGRKVNNEYDYYSP 241
G + + Y E+++A ++ ++ MR N DGR ++ E + P
Sbjct: 132 GSQYRSAIYTLTPEQEQAAQASLQRFQQ-----AMRE-------NSDGRAISTEIEPAGP 179
Query: 242 LKYSNGIDQMFSDENPNSYCSI 263
Y+ Q + +NPN YC +
Sbjct: 180 FYYAEEDHQQYLHKNPNGYCGL 201
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.131 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,207,400
Number of Sequences: 539616
Number of extensions: 5225854
Number of successful extensions: 14964
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 271
Number of HSP's that attempted gapping in prelim test: 14269
Number of HSP's gapped (non-prelim): 771
length of query: 264
length of database: 191,569,459
effective HSP length: 115
effective length of query: 149
effective length of database: 129,513,619
effective search space: 19297529231
effective search space used: 19297529231
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (27.7 bits)