Query 024707
Match_columns 264
No_of_seqs 165 out of 555
Neff 2.7
Searched_HMMs 46136
Date Fri Mar 29 06:45:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024707.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024707hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1603 Copper chaperone [Inor 99.6 3.3E-15 7.2E-20 110.0 6.9 60 7-66 4-68 (73)
2 PF00403 HMA: Heavy-metal-asso 99.0 4.9E-10 1.1E-14 77.8 6.0 52 11-63 1-61 (62)
3 KOG4656 Copper chaperone for s 98.8 6.1E-09 1.3E-13 94.5 6.0 60 7-67 6-70 (247)
4 COG2608 CopZ Copper chaperone 98.7 6E-08 1.3E-12 71.5 6.0 57 8-65 2-67 (71)
5 PLN02957 copper, zinc superoxi 97.8 0.00067 1.4E-08 60.1 13.1 57 8-65 6-67 (238)
6 PRK10671 copA copper exporting 97.3 0.00046 9.9E-09 70.0 5.9 56 9-67 4-65 (834)
7 TIGR00003 copper ion binding p 94.7 0.19 4E-06 30.5 6.0 47 11-57 5-60 (68)
8 COG2217 ZntA Cation transport 94.3 0.073 1.6E-06 55.0 5.5 56 9-65 3-67 (713)
9 PRK10671 copA copper exporting 92.2 0.25 5.4E-06 50.7 5.6 56 9-65 100-161 (834)
10 KOG0207 Cation transport ATPas 84.2 1.9 4E-05 46.7 5.6 57 8-65 146-211 (951)
11 PRK11033 zntA zinc/cadmium/mer 82.3 2.4 5.1E-05 43.6 5.4 37 10-46 55-97 (741)
12 KOG0207 Cation transport ATPas 76.4 3.4 7.4E-05 44.7 4.5 58 15-73 2-66 (951)
13 PF09510 Rtt102p: Rtt102p-like 59.5 6.2 0.00013 33.4 1.9 31 214-244 1-31 (130)
14 PRK13748 putative mercuric red 34.5 95 0.0021 30.0 5.8 48 10-57 2-57 (561)
15 PHA01634 hypothetical protein 27.7 19 0.00041 31.8 -0.1 11 15-25 97-107 (156)
16 TIGR02052 MerP mercuric transp 27.7 1.5E+02 0.0033 20.0 4.4 47 11-57 26-81 (92)
17 COG1888 Uncharacterized protei 27.6 82 0.0018 26.2 3.5 42 21-63 24-74 (97)
18 PF02107 FlgH: Flagellar L-rin 27.4 45 0.00097 29.0 2.1 29 26-54 110-138 (179)
19 PF04972 BON: BON domain; Int 25.6 77 0.0017 21.8 2.7 34 27-61 14-47 (64)
20 TIGR00411 redox_disulf_1 small 20.2 3E+02 0.0066 18.9 5.3 17 42-58 63-79 (82)
No 1
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=99.59 E-value=3.3e-15 Score=110.02 Aligned_cols=60 Identities=25% Similarity=0.288 Sum_probs=55.2
Q ss_pred ceeEEEEEeCcchhhhccc-----ccCceeEEEeecCCCEEEEEeecCHHHHHHHHHHHhCCcee
Q 024707 7 DSMNYLKGKWHIRHLINYI-----SSTGLETVNMDVQEDLVKVKGTVDITEVRSYIKDELKKDVV 66 (264)
Q Consensus 7 ~s~VVLKV~MHCEGCarKV-----kIkGVeSVeVDlekqKVTVtGtVDP~kLV~rLrKKTGK~Ae 66 (264)
.+.++++|.|||+||+++| +++||++|.+|+++++|||.|.+||..|++.|++.+++++.
T Consensus 4 ~~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k~~~k~~~ 68 (73)
T KOG1603|consen 4 IKTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLKKTGGKRAE 68 (73)
T ss_pred ccEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHHhcCCCceE
Confidence 4678999999999999999 99999999999999999999999999999999886646663
No 2
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.04 E-value=4.9e-10 Score=77.84 Aligned_cols=52 Identities=17% Similarity=0.183 Sum_probs=46.2
Q ss_pred EEEE-eCcchhhhccc-----ccCceeEEEeecCCCEEEEEeecC---HHHHHHHHHHHhCC
Q 024707 11 YLKG-KWHIRHLINYI-----SSTGLETVNMDVQEDLVKVKGTVD---ITEVRSYIKDELKK 63 (264)
Q Consensus 11 VLKV-~MHCEGCarKV-----kIkGVeSVeVDlekqKVTVtGtVD---P~kLV~rLrKKTGK 63 (264)
+|+| +|+|++|+++| +++||.+|.+|+..++|+|.+..+ +.+|.++|++ +|.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~-~Gy 61 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK-AGY 61 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH-TTS
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH-hCc
Confidence 5788 89999999999 999999999999999999999844 5999999964 453
No 3
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=98.81 E-value=6.1e-09 Score=94.46 Aligned_cols=60 Identities=17% Similarity=0.342 Sum_probs=54.6
Q ss_pred ceeEEEEEeCcchhhhccc-----ccCceeEEEeecCCCEEEEEeecCHHHHHHHHHHHhCCceee
Q 024707 7 DSMNYLKGKWHIRHLINYI-----SSTGLETVNMDVQEDLVKVKGTVDITEVRSYIKDELKKDVVI 67 (264)
Q Consensus 7 ~s~VVLKV~MHCEGCarKV-----kIkGVeSVeVDlekqKVTVtGtVDP~kLV~rLrKKTGK~AeI 67 (264)
.-.++|.|.|||++|+..| .++||.+|+||+++|.|.|.+.+.|+++...|+ .||++|+|
T Consensus 6 ~~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le-~tGr~Avl 70 (247)
T KOG4656|consen 6 TYEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLE-NTGRDAVL 70 (247)
T ss_pred ceeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHHH-hhChheEE
Confidence 3467999999999999999 778888999999999999999999999999995 78898866
No 4
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.65 E-value=6e-08 Score=71.51 Aligned_cols=57 Identities=21% Similarity=0.303 Sum_probs=48.2
Q ss_pred eeEEEEE-eCcchhhhccc-----ccCceeEEEeecCC--CEEEEEe-ecCHHHHHHHHHHHhCCce
Q 024707 8 SMNYLKG-KWHIRHLINYI-----SSTGLETVNMDVQE--DLVKVKG-TVDITEVRSYIKDELKKDV 65 (264)
Q Consensus 8 s~VVLKV-~MHCEGCarKV-----kIkGVeSVeVDlek--qKVTVtG-tVDP~kLV~rLrKKTGK~A 65 (264)
+...|+| +|+|++|+..| .++||.+|++|++. ..|++.+ .++..+|+++|. ..|-.+
T Consensus 2 ~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~-~aGy~~ 67 (71)
T COG2608 2 MKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIE-DAGYKV 67 (71)
T ss_pred ceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHH-HcCCCe
Confidence 3568999 99999999999 99999999999999 5666667 699999999996 445544
No 5
>PLN02957 copper, zinc superoxide dismutase
Probab=97.77 E-value=0.00067 Score=60.14 Aligned_cols=57 Identities=11% Similarity=0.268 Sum_probs=50.6
Q ss_pred eeEEEEEeCcchhhhccc-----ccCceeEEEeecCCCEEEEEeecCHHHHHHHHHHHhCCce
Q 024707 8 SMNYLKGKWHIRHLINYI-----SSTGLETVNMDVQEDLVKVKGTVDITEVRSYIKDELKKDV 65 (264)
Q Consensus 8 s~VVLKV~MHCEGCarKV-----kIkGVeSVeVDlekqKVTVtGtVDP~kLV~rLrKKTGK~A 65 (264)
..+.|.|.|+|+.|+.+| .++||.++.+++..++++|.+.+++..++.+|+ .++..+
T Consensus 6 ~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe-~~Gy~a 67 (238)
T PLN02957 6 LLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALE-QTGRKA 67 (238)
T ss_pred EEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHH-HcCCcE
Confidence 445899999999999998 889999999999999999998889999999985 667766
No 6
>PRK10671 copA copper exporting ATPase; Provisional
Probab=97.25 E-value=0.00046 Score=70.05 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=48.7
Q ss_pred eEEEEE-eCcchhhhccc-----ccCceeEEEeecCCCEEEEEeecCHHHHHHHHHHHhCCceee
Q 024707 9 MNYLKG-KWHIRHLINYI-----SSTGLETVNMDVQEDLVKVKGTVDITEVRSYIKDELKKDVVI 67 (264)
Q Consensus 9 ~VVLKV-~MHCEGCarKV-----kIkGVeSVeVDlekqKVTVtGtVDP~kLV~rLrKKTGK~AeI 67 (264)
+++|+| +|+|.+|+++| +++||.+|.++++ .++|++.+++..+.+.++ ..|-.+.+
T Consensus 4 ~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~~~~~~i~~~i~-~~Gy~~~~ 65 (834)
T PRK10671 4 TIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGTASAEALIETIK-QAGYDASV 65 (834)
T ss_pred EEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEecCCHHHHHHHHH-hcCCcccc
Confidence 458999 99999999999 9999999999994 677788899999999995 66777744
No 7
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=94.71 E-value=0.19 Score=30.49 Aligned_cols=47 Identities=17% Similarity=0.204 Sum_probs=38.4
Q ss_pred EEEE-eCcchhhhccc-----ccCceeEEEeecCCCEEEEEe---ecCHHHHHHHH
Q 024707 11 YLKG-KWHIRHLINYI-----SSTGLETVNMDVQEDLVKVKG---TVDITEVRSYI 57 (264)
Q Consensus 11 VLKV-~MHCEGCarKV-----kIkGVeSVeVDlekqKVTVtG---tVDP~kLV~rL 57 (264)
.+.| +|+|..|+..| .+++|.++.++.....+.|.- .+++..+...+
T Consensus 5 ~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (68)
T TIGR00003 5 TVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAI 60 (68)
T ss_pred EEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHH
Confidence 6788 89999999998 778999999999999988863 35677776665
No 8
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=94.29 E-value=0.073 Score=55.03 Aligned_cols=56 Identities=13% Similarity=0.109 Sum_probs=46.5
Q ss_pred eEEEEE-eCcchhhhccc----ccCceeEEEeecCCCEEEEEee---cC-HHHHHHHHHHHhCCce
Q 024707 9 MNYLKG-KWHIRHLINYI----SSTGLETVNMDVQEDLVKVKGT---VD-ITEVRSYIKDELKKDV 65 (264)
Q Consensus 9 ~VVLKV-~MHCEGCarKV----kIkGVeSVeVDlekqKVTVtGt---VD-P~kLV~rLrKKTGK~A 65 (264)
...|.| +|||..|+.+| +++||+++.+++...+++|... ++ ++.+...++ ..+-.+
T Consensus 3 ~~~l~v~Gm~Ca~C~~~ie~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~-~~gy~~ 67 (713)
T COG2217 3 ETSLSVEGMTCAACASRIEALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVE-KAGYSA 67 (713)
T ss_pred eeEEeecCcCcHHHHHHHHHHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHH-hcCccc
Confidence 357888 99999999988 9999999999999999999853 56 788888885 445444
No 9
>PRK10671 copA copper exporting ATPase; Provisional
Probab=92.23 E-value=0.25 Score=50.69 Aligned_cols=56 Identities=11% Similarity=0.121 Sum_probs=46.7
Q ss_pred eEEEEE-eCcchhhhccc-----ccCceeEEEeecCCCEEEEEeecCHHHHHHHHHHHhCCce
Q 024707 9 MNYLKG-KWHIRHLINYI-----SSTGLETVNMDVQEDLVKVKGTVDITEVRSYIKDELKKDV 65 (264)
Q Consensus 9 ~VVLKV-~MHCEGCarKV-----kIkGVeSVeVDlekqKVTVtGtVDP~kLV~rLrKKTGK~A 65 (264)
.+.|.| +|||..|+..| .++||.++.++...+++.|.+..++..+.+.++ ..+-.+
T Consensus 100 ~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~~s~~~I~~~I~-~~Gy~a 161 (834)
T PRK10671 100 SQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVE-KAGYGA 161 (834)
T ss_pred eEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEccCCHHHHHHHHH-hcCCCc
Confidence 356777 99999999999 899999999999999999987788888888874 455544
No 10
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=84.21 E-value=1.9 Score=46.66 Aligned_cols=57 Identities=14% Similarity=0.127 Sum_probs=47.6
Q ss_pred eeEEEEE-eCcchhhhccc-----ccCceeEEEeecCCCEEEEEe---ecCHHHHHHHHHHHhCCce
Q 024707 8 SMNYLKG-KWHIRHLINYI-----SSTGLETVNMDVQEDLVKVKG---TVDITEVRSYIKDELKKDV 65 (264)
Q Consensus 8 s~VVLKV-~MHCEGCarKV-----kIkGVeSVeVDlekqKVTVtG---tVDP~kLV~rLrKKTGK~A 65 (264)
..++|.| +|.|.+|..+| +++||.++.+++..+++.|.= ..-|-.+++.|. .++-.+
T Consensus 146 ~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie-~~~~~~ 211 (951)
T KOG0207|consen 146 QKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIE-ETGFEA 211 (951)
T ss_pred CcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHH-hhcccc
Confidence 3568999 99999999999 999999999999999999854 367888999986 344433
No 11
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=82.34 E-value=2.4 Score=43.60 Aligned_cols=37 Identities=11% Similarity=0.053 Sum_probs=32.3
Q ss_pred EEEEE-eCcchhhhccc-----ccCceeEEEeecCCCEEEEEe
Q 024707 10 NYLKG-KWHIRHLINYI-----SSTGLETVNMDVQEDLVKVKG 46 (264)
Q Consensus 10 VVLKV-~MHCEGCarKV-----kIkGVeSVeVDlekqKVTVtG 46 (264)
+.+.| +|||..|+..+ .++||.++.++....++.|.-
T Consensus 55 ~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~ 97 (741)
T PRK11033 55 YSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDA 97 (741)
T ss_pred EEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEe
Confidence 46778 89999999999 899999999999888887763
No 12
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=76.36 E-value=3.4 Score=44.74 Aligned_cols=58 Identities=12% Similarity=0.255 Sum_probs=48.3
Q ss_pred eCcchhhhccc-----ccCceeEEEeecCCCEEEE--EeecCHHHHHHHHHHHhCCceeeecCccc
Q 024707 15 KWHIRHLINYI-----SSTGLETVNMDVQEDLVKV--KGTVDITEVRSYIKDELKKDVVIIFPAEV 73 (264)
Q Consensus 15 ~MHCEGCarKV-----kIkGVeSVeVDlekqKVTV--tGtVDP~kLV~rLrKKTGK~AeIyvPyEv 73 (264)
+|.|..|.+.| ..+||.+++|.+.++..+| .-.++|+.+.++++ -.+..+.++.+.+.
T Consensus 2 gmtc~ac~~si~~~~~~~~g~~~i~vsl~~~~~~v~~~~~~~~~~i~~~ie-d~gf~~~~~~~~~~ 66 (951)
T KOG0207|consen 2 GMTCSACSNSIEKAISRKPGVQKIEVSLAQKRANVSYDNIVSPESIKETIE-DMGFEASLLSDSEI 66 (951)
T ss_pred CccHHHHhhhHHHHHhcCCCceeEEEEeccccceEEEeeccCHHHHHHHhh-cccceeeecccCcc
Confidence 79999999999 9999999999998887776 44599999999995 56788866666543
No 13
>PF09510 Rtt102p: Rtt102p-like transcription regulator protein; InterPro: IPR018304 Rtt102p (Regulator of Ty1 Transposition Protein 102) is a transcription regulator protein found in fungi that appears to be integrally associated with both the Swi-Snf and the RSC chromatin remodelling complexes, []. RSC is involved in transcription regulation and nucleosome positioning, and is responsible for the transfer of a histone octamer from a nucleosome core particle to naked DNA. The reaction requires ATP and involves an activated RSC-nucleosome intermediate. Remodelling reaction also involves DNA translocation, DNA twist and conformational change. As a reconfigurer of centromeric and flanking nucleosomes, RSC complex is required both for proper kinetochore function in chromosome segregation and, via a PKC1-dependent signalling pathway, for organisation of the cellular cytoskeleton. It is a probable component of the SWI/SNF complex, an ATP-dependent chromatin-remodelling complex, is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors.
Probab=59.53 E-value=6.2 Score=33.42 Aligned_cols=31 Identities=32% Similarity=0.592 Sum_probs=26.8
Q ss_pred CccccCCCceeeccCCccccccccccCcccc
Q 024707 214 SVMRNENPKTYLNYDGRKVNNEYDYYSPLKY 244 (264)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (264)
|+|+.-|--.|++-...++.=+||+|+|.+-
T Consensus 1 sli~~AN~~~y~~~~~~~~~W~yDWytP~k~ 31 (130)
T PF09510_consen 1 SLIERANKSGYGNSADKKIHWKYDWYTPSKS 31 (130)
T ss_pred ChhHhccccccccCCCCceeeEEeccccccc
Confidence 5778888888998888889999999999983
No 14
>PRK13748 putative mercuric reductase; Provisional
Probab=34.52 E-value=95 Score=30.01 Aligned_cols=48 Identities=6% Similarity=0.055 Sum_probs=35.7
Q ss_pred EEEEE-eCcchhhhccc-----ccCceeEEEeecCCCEEEEEe--ecCHHHHHHHH
Q 024707 10 NYLKG-KWHIRHLINYI-----SSTGLETVNMDVQEDLVKVKG--TVDITEVRSYI 57 (264)
Q Consensus 10 VVLKV-~MHCEGCarKV-----kIkGVeSVeVDlekqKVTVtG--tVDP~kLV~rL 57 (264)
+.+.+ +|+|..|...+ .++|+....++...+.+.+.. ..++..+...+
T Consensus 2 ~~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~~~~~~i~~~i 57 (561)
T PRK13748 2 TTLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGTSPDALTAAV 57 (561)
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCCCCHHHHHHHH
Confidence 34556 89999999998 778889899999888877763 24556565554
No 15
>PHA01634 hypothetical protein
Probab=27.70 E-value=19 Score=31.85 Aligned_cols=11 Identities=0% Similarity=-0.209 Sum_probs=10.1
Q ss_pred eCcchhhhccc
Q 024707 15 KWHIRHLINYI 25 (264)
Q Consensus 15 ~MHCEGCarKV 25 (264)
.|+|+||++.+
T Consensus 97 ~iDCeGCE~~l 107 (156)
T PHA01634 97 VMDCEGCEEKL 107 (156)
T ss_pred EEEccchHHhc
Confidence 58999999998
No 16
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=27.67 E-value=1.5e+02 Score=19.98 Aligned_cols=47 Identities=9% Similarity=0.042 Sum_probs=30.8
Q ss_pred EEEE-eCcchhhhccc-----ccCceeEEEeecCCCEEEEEe---ecCHHHHHHHH
Q 024707 11 YLKG-KWHIRHLINYI-----SSTGLETVNMDVQEDLVKVKG---TVDITEVRSYI 57 (264)
Q Consensus 11 VLKV-~MHCEGCarKV-----kIkGVeSVeVDlekqKVTVtG---tVDP~kLV~rL 57 (264)
.+.+ +|+|..|...+ ..+|+....+......+.+.- ..++..+...+
T Consensus 26 ~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (92)
T TIGR02052 26 TLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEAT 81 (92)
T ss_pred EEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHH
Confidence 4555 78899998887 677888888887776655541 23444443443
No 17
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.64 E-value=82 Score=26.17 Aligned_cols=42 Identities=26% Similarity=0.448 Sum_probs=30.9
Q ss_pred hhccc-ccCceeEEEe-------ecCCCEEEEEee-cCHHHHHHHHHHHhCC
Q 024707 21 LINYI-SSTGLETVNM-------DVQEDLVKVKGT-VDITEVRSYIKDELKK 63 (264)
Q Consensus 21 CarKV-kIkGVeSVeV-------DlekqKVTVtGt-VDP~kLV~rLrKKTGK 63 (264)
-+..+ +++||+-|.+ +...=++||.|. +|=..|.+.|++ +|-
T Consensus 24 ~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~-~Gg 74 (97)
T COG1888 24 LALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEE-LGG 74 (97)
T ss_pred HHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHH-cCC
Confidence 34445 8888887765 335568999996 999999999964 443
No 18
>PF02107 FlgH: Flagellar L-ring protein; InterPro: IPR000527 The flgH, flgI and fliF genes of Salmonella typhimurium encode the major proteins for the L, P and M rings of the flagellar basal body []. In fact, the basal body consists of four rings (L,P,S and M) surrounding the flagellar rod, which is believed to transmit motor rotation to the filament []. The M ring is integral to the inner membrane of the cell, and may be connected to the rod via the S (supramembrane) ring, which lies just distal to it. The L and P rings reside in the outer membrane and periplasmic space, respectively. FlgH and FlgI, which are exported across the cell membrane to their destinations in the outer membrane and periplasmic space, have typical N-terminal cleaved signal-peptide sequences. FlgH is predicted to have an extensive beta-sheet structure, in keeping with other outer membrane proteins [].; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0009427 bacterial-type flagellum basal body, distal rod, L ring
Probab=27.38 E-value=45 Score=29.00 Aligned_cols=29 Identities=14% Similarity=0.367 Sum_probs=27.3
Q ss_pred ccCceeEEEeecCCCEEEEEeecCHHHHH
Q 024707 26 SSTGLETVNMDVQEDLVKVKGTVDITEVR 54 (264)
Q Consensus 26 kIkGVeSVeVDlekqKVTVtGtVDP~kLV 54 (264)
.|.|=..|.++-+.+.++|.|.|.|+.|-
T Consensus 110 ~I~G~k~i~vn~e~~~i~lsGiVRp~DI~ 138 (179)
T PF02107_consen 110 VIEGEKQIRVNGEEQYIRLSGIVRPEDID 138 (179)
T ss_pred EEEEEEEEEECCCEEEEEEEEEECHHHCC
Confidence 78999999999999999999999999875
No 19
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=25.56 E-value=77 Score=21.84 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=24.9
Q ss_pred cCceeEEEeecCCCEEEEEeecCHHHHHHHHHHHh
Q 024707 27 STGLETVNMDVQEDLVKVKGTVDITEVRSYIKDEL 61 (264)
Q Consensus 27 IkGVeSVeVDlekqKVTVtGtVDP~kLV~rLrKKT 61 (264)
+++- .+.|....+.|+++|.|+-.....++.+..
T Consensus 14 ~~~~-~i~v~v~~g~v~L~G~v~s~~~~~~a~~~a 47 (64)
T PF04972_consen 14 LPDS-NISVSVENGVVTLSGEVPSQEQRDAAERLA 47 (64)
T ss_dssp TT-T-TEEEEEECTEEEEEEEESSCHHHHHHHHHH
T ss_pred cCCC-eEEEEEECCEEEEEeeCcHHHHHHhHHhhh
Confidence 5555 688999999999999996666666655443
No 20
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=20.23 E-value=3e+02 Score=18.92 Aligned_cols=17 Identities=29% Similarity=0.284 Sum_probs=9.5
Q ss_pred EEEEeecCHHHHHHHHH
Q 024707 42 VKVKGTVDITEVRSYIK 58 (264)
Q Consensus 42 VTVtGtVDP~kLV~rLr 58 (264)
....|..+++.|.+.|.
T Consensus 63 ~~~~G~~~~~~l~~~l~ 79 (82)
T TIGR00411 63 VEFIGAPTKEELVEAIK 79 (82)
T ss_pred EEEecCCCHHHHHHHHH
Confidence 34555556666655554
Done!