Your job contains 1 sequence.
>024708
MGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESN
VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE
GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGAT
ANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMPMGPGMMQM
HMPGQSGMQHHHGAMPPPRPDHMQ
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 024708
(264 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2163746 - symbol:PTB2 "AT5G53180" species:3702... 769 2.4e-76 1
TAIR|locus:2102142 - symbol:PTB1 "polypyrimidine tract-bi... 630 1.3e-61 1
ZFIN|ZDB-GENE-050522-492 - symbol:ptbp1a "polypyrimidine ... 302 3.6e-26 1
UNIPROTKB|A8YXY5 - symbol:PTBP1 "PTBP1 protein" species:9... 286 6.3e-25 1
ZFIN|ZDB-GENE-030131-9796 - symbol:ptbp1b "polypyrimidine... 289 1.0e-24 1
UNIPROTKB|Q6P736 - symbol:Ptbp1 "Polypyrimidine tract bin... 286 1.8e-24 1
UNIPROTKB|J9P5T5 - symbol:PTBP1 "Uncharacterized protein"... 286 1.8e-24 1
UNIPROTKB|F1PCJ7 - symbol:PTBP1 "Uncharacterized protein"... 286 1.9e-24 1
UNIPROTKB|D4AB53 - symbol:Ptbp1 "Polypyrimidine tract-bin... 284 2.5e-24 1
UNIPROTKB|K7EK45 - symbol:PTBP1 "Polypyrimidine tract-bin... 278 2.6e-24 1
UNIPROTKB|Q8WN55 - symbol:PTBP1 "Polypyrimidine tract-bin... 284 2.6e-24 1
UNIPROTKB|P26599 - symbol:PTBP1 "Polypyrimidine tract-bin... 284 2.6e-24 1
UNIPROTKB|F1S6R7 - symbol:PTBP1 "Polypyrimidine tract-bin... 283 3.9e-24 1
UNIPROTKB|Q29099 - symbol:PTBP1 "Polypyrimidine tract-bin... 283 3.9e-24 1
RGD|62047 - symbol:Ptbp1 "polypyrimidine tract binding pr... 282 5.0e-24 1
MGI|MGI:97791 - symbol:Ptbp1 "polypyrimidine tract bindin... 280 6.9e-24 1
UNIPROTKB|F1LM18 - symbol:Ptbp1 "Polypyrimidine tract-bin... 278 1.4e-23 1
RGD|621671 - symbol:Ptbp3 "polypyrimidine tract binding p... 276 1.9e-23 1
UNIPROTKB|F1P5K0 - symbol:PTBP1 "Uncharacterized protein"... 276 1.9e-23 1
UNIPROTKB|E1BVR1 - symbol:PTBP1 "Uncharacterized protein"... 276 2.0e-23 1
MGI|MGI:1923334 - symbol:Ptbp3 "polypyrimidine tract bind... 274 3.1e-23 1
UNIPROTKB|B4DI28 - symbol:PTBP2 "cDNA FLJ55578, highly si... 264 7.8e-23 1
UNIPROTKB|Q06A95 - symbol:ROD1 "ROD1" species:9823 "Sus s... 268 1.4e-22 1
UNIPROTKB|O95758 - symbol:PTBP3 "Polypyrimidine tract-bin... 268 1.7e-22 1
UNIPROTKB|F1S549 - symbol:LOC100515203 "Uncharacterized p... 262 1.7e-22 1
UNIPROTKB|F1MPG6 - symbol:F1MPG6 "Uncharacterized protein... 267 1.8e-22 1
UNIPROTKB|I3LP39 - symbol:LOC100515203 "Uncharacterized p... 262 1.9e-22 1
UNIPROTKB|I3LDE4 - symbol:LOC100515203 "Uncharacterized p... 262 2.1e-22 1
TAIR|locus:2018630 - symbol:PTB3 "polypyrimidine tract-bi... 263 2.2e-22 1
ZFIN|ZDB-GENE-091116-1 - symbol:ptbp3 "polypyrimidine tra... 264 3.8e-22 1
UNIPROTKB|Q9UKA9 - symbol:PTBP2 "Polypyrimidine tract-bin... 264 4.0e-22 1
UNIPROTKB|F1NRD6 - symbol:PTBP2 "Uncharacterized protein"... 264 4.1e-22 1
UNIPROTKB|E2RSK4 - symbol:PTBP2 "Uncharacterized protein"... 264 4.1e-22 1
UNIPROTKB|B4DSS8 - symbol:PTBP2 "Polypyrimidine tract-bin... 264 4.4e-22 1
UNIPROTKB|F1PXP9 - symbol:PTBP3 "Uncharacterized protein"... 263 4.9e-22 1
MGI|MGI:1860489 - symbol:Ptbp2 "polypyrimidine tract bind... 263 5.2e-22 1
RGD|1359267 - symbol:Ptbp2 "polypyrimidine tract binding ... 263 5.2e-22 1
ZFIN|ZDB-GENE-050320-141 - symbol:ptbp2a "polypyrimidine ... 257 2.1e-21 1
ZFIN|ZDB-GENE-060810-49 - symbol:ptbp2b "polypyrimidine t... 257 2.4e-21 1
WB|WBGene00004207 - symbol:ptb-1 species:6239 "Caenorhabd... 250 2.0e-20 1
RGD|727953 - symbol:Smptb "polypyrimidine tract-binding p... 247 3.7e-20 1
FB|FBgn0011224 - symbol:heph "hephaestus" species:7227 "D... 249 4.1e-20 1
UNIPROTKB|E1C5J2 - symbol:E1C5J2 "Uncharacterized protein... 237 5.7e-20 1
UNIPROTKB|F1ND44 - symbol:F1ND44 "Uncharacterized protein... 233 2.2e-19 1
ZFIN|ZDB-GENE-040426-2707 - symbol:hnrnpl2 "heterogeneous... 218 4.0e-17 1
DICTYBASE|DDB_G0275365 - symbol:DDB_G0275365 "Heterogeneo... 215 1.5e-16 1
MGI|MGI:104816 - symbol:Hnrnpl "heterogeneous nuclear rib... 206 1.0e-15 1
UNIPROTKB|F2Z3R2 - symbol:Hnrnpl "Protein Hnrnpl" species... 206 1.0e-15 1
UNIPROTKB|E1BIB4 - symbol:HNRNPL "Uncharacterized protein... 206 1.0e-15 1
UNIPROTKB|E2R944 - symbol:HNRNPL "Uncharacterized protein... 206 1.0e-15 1
UNIPROTKB|P14866 - symbol:HNRNPL "Heterogeneous nuclear r... 206 1.0e-15 1
DICTYBASE|DDB_G0278105 - symbol:DDB_G0278105 "heterogeneo... 203 1.7e-15 1
UNIPROTKB|F1LZ79 - symbol:F1LZ79 "Uncharacterized protein... 201 2.4e-15 1
UNIPROTKB|F1M040 - symbol:F1M040 "Uncharacterized protein... 201 2.4e-15 1
ZFIN|ZDB-GENE-040426-710 - symbol:hnrpl "heterogeneous nu... 201 2.9e-15 1
UNIPROTKB|H7BXH8 - symbol:HNRPLL "Heterogeneous nuclear r... 191 4.2e-15 1
UNIPROTKB|F1LPP9 - symbol:Hnrnpl "Protein Hnrnpl" species... 200 5.0e-15 1
UNIPROTKB|C9IYN3 - symbol:HNRPLL "Heterogeneous nuclear r... 188 8.8e-15 1
UNIPROTKB|F1P0T4 - symbol:HNRPLL "Uncharacterized protein... 194 1.3e-14 1
UNIPROTKB|Q8WVV9 - symbol:HNRPLL "Heterogeneous nuclear r... 191 3.6e-14 1
MGI|MGI:1919942 - symbol:Hnrpll "heterogeneous nuclear ri... 191 4.2e-14 1
RGD|1305861 - symbol:Hnrpll "heterogeneous nuclear ribonu... 191 4.2e-14 1
UNIPROTKB|F1LY02 - symbol:F1LY02 "Uncharacterized protein... 189 4.9e-14 1
UNIPROTKB|I3L8B8 - symbol:HNRPLL "Uncharacterized protein... 188 6.2e-14 1
UNIPROTKB|I3LG16 - symbol:HNRPLL "Uncharacterized protein... 188 7.5e-14 1
UNIPROTKB|F1N7G0 - symbol:HNRPLL "Uncharacterized protein... 188 7.6e-14 1
UNIPROTKB|D6W592 - symbol:HNRPLL "Heterogeneous nuclear r... 188 7.6e-14 1
UNIPROTKB|J9P3Y8 - symbol:HNRPLL "Uncharacterized protein... 188 7.7e-14 1
DICTYBASE|DDB_G0284321 - symbol:DDB_G0284321 "putative po... 191 8.1e-14 1
UNIPROTKB|F1LQ48 - symbol:Hnrnpl "Protein Hnrnpl" species... 186 1.5e-13 1
FB|FBgn0003435 - symbol:sm "smooth" species:7227 "Drosoph... 183 2.1e-13 1
GENEDB_PFALCIPARUM|PFF0320c - symbol:PFF0320c "polypyrimi... 179 1.0e-12 1
UNIPROTKB|C6KSR3 - symbol:PFF0320c "Polypyrimidine tract ... 179 1.0e-12 1
UNIPROTKB|K7ES59 - symbol:PTBP1 "Polypyrimidine tract-bin... 152 5.8e-11 1
UNIPROTKB|K7EKJ7 - symbol:PTBP1 "Polypyrimidine tract-bin... 157 9.4e-11 1
UNIPROTKB|F6Q0P6 - symbol:PTBP2 "Uncharacterized protein"... 148 3.2e-09 1
WB|WBGene00016624 - symbol:C44B7.2 species:6239 "Caenorha... 151 1.4e-08 1
UNIPROTKB|C9JJZ7 - symbol:HNRPLL "Heterogeneous nuclear r... 102 0.00028 1
>TAIR|locus:2163746 [details] [associations]
symbol:PTB2 "AT5G53180" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0009846 "pollen germination" evidence=IGI] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] [GO:0006417
"regulation of translation" evidence=IEP] [GO:0043484 "regulation
of RNA splicing" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0009845 "seed germination" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043484 GO:GO:0000932 GO:GO:0009846 EMBL:AB025622
HOGENOM:HOG000238077 KO:K14948 EMBL:BT015760 EMBL:BT020199
IPI:IPI00533493 RefSeq:NP_200130.1 UniGene:At.43107
ProteinModelPortal:Q9FGL9 SMR:Q9FGL9 IntAct:Q9FGL9 STRING:Q9FGL9
PaxDb:Q9FGL9 PRIDE:Q9FGL9 EnsemblPlants:AT5G53180.1 GeneID:835399
KEGG:ath:AT5G53180 GeneFarm:5075 TAIR:At5g53180 eggNOG:NOG263807
InParanoid:Q9FGL9 OMA:KKMEPES PhylomeDB:Q9FGL9
ProtClustDB:CLSN2720458 Genevestigator:Q9FGL9 GermOnline:AT5G53180
Uniprot:Q9FGL9
Length = 429
Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
Identities = 151/189 (79%), Positives = 169/189 (89%)
Query: 1 MGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESN 60
+G C+L+ITYSAHTDL+VKFQSHRSRDYTNPYLPVAPSAID++GQ++VG+DGKK+EPESN
Sbjct: 185 VGQCSLKITYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDSTGQVAVGVDGKKMEPESN 244
Query: 61 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 120
VLLASIENMQYAVTLDVLHMVF+AFG VQKIAMFDKNGG+QALIQY DVQTAVVAKEALE
Sbjct: 245 VLLASIENMQYAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAKEALE 304
Query: 121 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPV--PMVG 178
GHCIYDGGFCKLHI+YSRHTDLSIKVNNDRSRDYT+P+ P+ P + QQPV P G
Sbjct: 305 GHCIYDGGFCKLHITYSRHTDLSIKVNNDRSRDYTMPNPPV----P--MPQQPVQNPYAG 358
Query: 179 ATANQYNGA 187
QY+ A
Sbjct: 359 -NPQQYHAA 366
Score = 253 (94.1 bits), Expect = 2.9e-21, P = 2.9e-21
Identities = 61/126 (48%), Positives = 76/126 (60%)
Query: 60 NVLLASIENMQYA-VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 118
NVLL +IE V++DVLH+VFSAFG V KI F+K G QAL+Q+ D +TA AK A
Sbjct: 111 NVLLVTIEGDDARMVSIDVLHLVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLA 170
Query: 119 LEGHCI--Y----DGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQ 172
L+G I Y G C L I+YS HTDL++K + RSRDYT P P+ S GQ
Sbjct: 171 LDGRSIPRYLLAETVGQCSLKITYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDSTGQV 230
Query: 173 PVPMVG 178
V + G
Sbjct: 231 AVGVDG 236
>TAIR|locus:2102142 [details] [associations]
symbol:PTB1 "polypyrimidine tract-binding protein 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0009846 "pollen germination" evidence=IGI] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] [GO:0006417
"regulation of translation" evidence=IEP] [GO:0043484 "regulation
of RNA splicing" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0009845 "seed germination" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006417 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043484 GO:GO:0000932 GO:GO:0009846 EMBL:AC008261
EMBL:AF076924 IPI:IPI00548173 PIR:T51814 RefSeq:NP_186764.1
UniGene:At.18320 ProteinModelPortal:Q9MAC5 SMR:Q9MAC5 STRING:Q9MAC5
PaxDb:Q9MAC5 PRIDE:Q9MAC5 EnsemblPlants:AT3G01150.1 GeneID:821129
KEGG:ath:AT3G01150 GeneFarm:5074 TAIR:At3g01150 eggNOG:NOG307589
HOGENOM:HOG000238077 InParanoid:Q9MAC5 KO:K14948 OMA:ESHEVSI
PhylomeDB:Q9MAC5 ProtClustDB:CLSN2684978 Genevestigator:Q9MAC5
GermOnline:AT3G01150 Uniprot:Q9MAC5
Length = 399
Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
Identities = 117/175 (66%), Positives = 146/175 (83%)
Query: 1 MGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESN 60
+G C+LR++YSAHTDL++KFQSHRSRDYTNPYLPV +A+D S Q ++G DGKK+E +SN
Sbjct: 184 VGSCSLRMSYSAHTDLNIKFQSHRSRDYTNPYLPVNQTAMDGSMQPALGADGKKVESQSN 243
Query: 61 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 120
VLL IENMQYAVT+DVLH VFSA+G VQKIA+F+KNG QALIQY D+ TA +AKEALE
Sbjct: 244 VLLGLIENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEALE 303
Query: 121 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQ--PSILGQQP 173
GHCIYDGG+CKL +SYSRHTDL++K +D+SRDYTLP ++ +Q P++ G P
Sbjct: 304 GHCIYDGGYCKLRLSYSRHTDLNVKAFSDKSRDYTLPDLSLLVAQKGPAVSGSAP 358
Score = 262 (97.3 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 63/127 (49%), Positives = 83/127 (65%)
Query: 60 NVLLASIENMQ-YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 118
NVLL + E ++ + V++DV+H+VFSAFG V KIA F+K G QAL+Q+ DV+TA A+ A
Sbjct: 110 NVLLVTFEGVESHEVSIDVIHLVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSA 169
Query: 119 LEGHCI--Y----DGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQ 172
L+G I Y G C L +SYS HTDL+IK + RSRDYT P P VN Q ++ G
Sbjct: 170 LDGRSIPRYLLSAHVGSCSLRMSYSAHTDLNIKFQSHRSRDYTNPYLP-VN-QTAMDGSM 227
Query: 173 PVPMVGA 179
P +GA
Sbjct: 228 Q-PALGA 233
>ZFIN|ZDB-GENE-050522-492 [details] [associations]
symbol:ptbp1a "polypyrimidine tract binding protein
1a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0060472 "positive regulation of cortical granule exocytosis by
elevation of cytosolic calcium ion concentration" evidence=IMP]
[GO:0009953 "dorsal/ventral pattern formation" evidence=IMP]
[GO:0045746 "negative regulation of Notch signaling pathway"
evidence=IMP] [GO:0060729 "intestinal epithelial structure
maintenance" evidence=IMP] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050522-492 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009953 GO:GO:0045746
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 HOVERGEN:HBG069548
KO:K13218 OMA:SEECAQT eggNOG:NOG263741 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ GO:GO:0060729 EMBL:CR788230 EMBL:BC095372
IPI:IPI00607308 RefSeq:NP_001018313.1 UniGene:Dr.45492 SMR:Q503D3
Ensembl:ENSDART00000017668 GeneID:323490 KEGG:dre:323490 CTD:323490
InParanoid:Q503D3 NextBio:20808275 GO:GO:0060472 Uniprot:Q503D3
Length = 574
Score = 302 (111.4 bits), Expect = 3.6e-26, P = 3.6e-26
Identities = 71/162 (43%), Positives = 92/162 (56%)
Query: 10 YSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENM 69
YS H +L ++ R L A +A+ G +DG + +S VL +EN+
Sbjct: 145 YSNHKELKTDNSPNQVR--AQAALQ-AVNAVQTGGMSLAAIDGAGMGSQSPVLRVIVENL 201
Query: 70 QYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGF 129
Y VTLDVLH +FS FG V KI F KN QAL+QY D TA AK +L+G IY+
Sbjct: 202 FYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALVQYSDGMTAQHAKLSLDGQNIYNA-C 260
Query: 130 CKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 171
C L IS+S+ T L++K NND+SRDYT P P +SQPS Q
Sbjct: 261 CTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTGDSQPSFDAQ 302
>UNIPROTKB|A8YXY5 [details] [associations]
symbol:PTBP1 "PTBP1 protein" species:9913 "Bos taurus"
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
UniGene:Bt.9031 HOVERGEN:HBG069548 EMBL:DAAA02020232 EMBL:BC103383
IPI:IPI00968681 SMR:A8YXY5 Ensembl:ENSBTAT00000066124
Uniprot:A8YXY5
Length = 446
Score = 286 (105.7 bits), Expect = 6.3e-25, P = 6.3e-25
Identities = 77/188 (40%), Positives = 107/188 (56%)
Query: 18 VKFQSHRS-RDYTNPYLPVAPSAIDA-----SGQLSVG-----LD-GKKLEPESNVLLAS 65
++F +H+ + ++P A +A+ A SG L++ +D G + +S VL
Sbjct: 128 IQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRII 187
Query: 66 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 125
+EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +A AK +L+G IY
Sbjct: 188 VENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY 247
Query: 126 DGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGA----TA 181
+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q GA +A
Sbjct: 248 NA-CCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQTMAAAFGAPGIMSA 305
Query: 182 NQYNGAQF 189
+ Y GA F
Sbjct: 306 SPYAGAGF 313
>ZFIN|ZDB-GENE-030131-9796 [details] [associations]
symbol:ptbp1b "polypyrimidine tract binding
protein 1b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-9796
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01649 HOVERGEN:HBG069548
eggNOG:NOG263741 HOGENOM:HOG000231699 EMBL:BC091854 IPI:IPI00613822
UniGene:Dr.75263 ProteinModelPortal:Q58EL3 STRING:Q58EL3
InParanoid:Q58EL3 ArrayExpress:Q58EL3 Bgee:Q58EL3 Uniprot:Q58EL3
Length = 586
Score = 289 (106.8 bits), Expect = 1.0e-24, P = 1.0e-24
Identities = 70/162 (43%), Positives = 96/162 (59%)
Query: 10 YSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDA--SGQLSVG-LDGKKLEPESNVLLASI 66
YS H +L ++ R A A++A +G L++G +D + S VL +
Sbjct: 164 YSNHKELKTDNSPNQVR------AQAALQAVNAVQTGSLTLGGVDPSGMTGPSPVLRVIV 217
Query: 67 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 126
EN+ Y VTLDVLH +FS FG V K+ F KN QAL+Q+ D TA AK AL+G IY+
Sbjct: 218 ENLFYPVTLDVLHQIFSKFGTVLKVITFTKNNQFQALLQFTDGLTAQHAKLALDGQNIYN 277
Query: 127 GGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 168
G C L IS+S+ T L++K NND+SRDYT P P +SQP++
Sbjct: 278 G-CCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTGDSQPAL 318
Score = 103 (41.3 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 20/37 (54%), Positives = 26/37 (70%)
Query: 2 GPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS 38
G CTLRI++S T L+VK+ + +SRDYT P LP S
Sbjct: 278 GCCTLRISFSKLTSLNVKYNNDKSRDYTRPDLPTGDS 314
Score = 76 (31.8 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 31/100 (31%), Positives = 51/100 (51%)
Query: 61 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEAL 119
V+L S N + VT L ++F +G V ++ MF+K ALIQ D A +A L
Sbjct: 393 VMLVSNLNPE-RVTPHCLFILFGVYGDVLRVKIMFNKKEN--ALIQMSDGTQAQLAMSHL 449
Query: 120 EGHCIYDGGFCKLHISYSRHTDLSI--KVNNDR--SRDYT 155
G +Y L I+ S+HT + + + + D+ ++DY+
Sbjct: 450 NGQKLYGR---PLRITLSKHTTVQMPREGHEDQGLTKDYS 486
>UNIPROTKB|Q6P736 [details] [associations]
symbol:Ptbp1 "Polypyrimidine tract binding protein 1,
isoform CRA_a" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
RGD:62047 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474029 TIGRFAMs:TIGR01649
CTD:5725 HOVERGEN:HBG069548 KO:K13218 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ IPI:IPI00390239 UniGene:Rn.64440 EMBL:BC061858
RefSeq:NP_001257986.1 RefSeq:NP_071961.2 SMR:Q6P736 STRING:Q6P736
Ensembl:ENSRNOT00000030357 GeneID:29497 KEGG:rno:29497
InParanoid:Q6P736 Genevestigator:Q6P736 Uniprot:Q6P736
Length = 556
Score = 286 (105.7 bits), Expect = 1.8e-24, P = 1.8e-24
Identities = 77/188 (40%), Positives = 107/188 (56%)
Query: 18 VKFQSHRS-RDYTNPYLPVAPSAIDA-----SGQLSVG-----LD-GKKLEPESNVLLAS 65
++F +H+ + ++P A +A+ A SG L++ +D G + +S VL
Sbjct: 127 IQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRII 186
Query: 66 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 125
+EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +A AK +L+G IY
Sbjct: 187 VENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY 246
Query: 126 DGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGA----TA 181
+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q GA +A
Sbjct: 247 NA-CCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQTMAAAFGAPGIMSA 304
Query: 182 NQYNGAQF 189
+ Y GA F
Sbjct: 305 SPYAGAGF 312
>UNIPROTKB|J9P5T5 [details] [associations]
symbol:PTBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 CTD:5725 KO:K13218 EMBL:AAEX03012673
RefSeq:XP_542215.2 ProteinModelPortal:J9P5T5
Ensembl:ENSCAFT00000049054 GeneID:485097 KEGG:cfa:485097
Uniprot:J9P5T5
Length = 557
Score = 286 (105.7 bits), Expect = 1.8e-24, P = 1.8e-24
Identities = 77/188 (40%), Positives = 107/188 (56%)
Query: 18 VKFQSHRS-RDYTNPYLPVAPSAIDA-----SGQLSVG-----LD-GKKLEPESNVLLAS 65
++F +H+ + ++P A +A+ A SG L++ +D G + +S VL
Sbjct: 128 IQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRII 187
Query: 66 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 125
+EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +A AK +L+G IY
Sbjct: 188 VENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY 247
Query: 126 DGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGA----TA 181
+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q GA +A
Sbjct: 248 NA-CCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQTMAAAFGAPGIMSA 305
Query: 182 NQYNGAQF 189
+ Y GA F
Sbjct: 306 SPYAGAGF 313
>UNIPROTKB|F1PCJ7 [details] [associations]
symbol:PTBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051148 "negative regulation of muscle cell
differentiation" evidence=IEA] [GO:0048025 "negative regulation of
mRNA splicing, via spliceosome" evidence=IEA] [GO:0036002 "pre-mRNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0048025 GO:GO:0000381
GO:GO:0036002 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
OMA:SEECAQT GO:GO:0051148 EMBL:AAEX03012673
Ensembl:ENSCAFT00000031317 Uniprot:F1PCJ7
Length = 558
Score = 286 (105.7 bits), Expect = 1.9e-24, P = 1.9e-24
Identities = 77/188 (40%), Positives = 107/188 (56%)
Query: 18 VKFQSHRS-RDYTNPYLPVAPSAIDA-----SGQLSVG-----LD-GKKLEPESNVLLAS 65
++F +H+ + ++P A +A+ A SG L++ +D G + +S VL
Sbjct: 129 IQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRII 188
Query: 66 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 125
+EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +A AK +L+G IY
Sbjct: 189 VENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY 248
Query: 126 DGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGA----TA 181
+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q GA +A
Sbjct: 249 NA-CCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQTMAAAFGAPGIMSA 306
Query: 182 NQYNGAQF 189
+ Y GA F
Sbjct: 307 SPYAGAGF 314
>UNIPROTKB|D4AB53 [details] [associations]
symbol:Ptbp1 "Polypyrimidine tract-binding protein 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:62047 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
IPI:IPI00390801 Ensembl:ENSRNOT00000030365 ArrayExpress:D4AB53
Uniprot:D4AB53
Length = 528
Score = 284 (105.0 bits), Expect = 2.5e-24, P = 2.5e-24
Identities = 78/206 (37%), Positives = 109/206 (52%)
Query: 18 VKFQSHRS-RDYTNPYLPVAPSAIDA-----SGQLSVG-----LD-GKKLEPESNVLLAS 65
++F +H+ + ++P A +A+ A SG L++ +D G + +S VL
Sbjct: 127 IQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRII 186
Query: 66 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 125
+EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +A AK +L+G IY
Sbjct: 187 VENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY 246
Query: 126 DGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYN 185
+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q G + +
Sbjct: 247 NA-CCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQTMAAAFGLSVPNVH 304
Query: 186 GAQFAXXXXXXXXXXXXTAAGWGAVP 211
GA AAG A+P
Sbjct: 305 GA--LAPLAIPSAAAAAAAAGRIAIP 328
Score = 99 (39.9 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 4 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--AIDASGQLSVGL 50
CTLRI +S T L+VK+ + +SRDYT P LP S ++D + + GL
Sbjct: 250 CTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGL 298
Score = 69 (29.3 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 25/75 (33%), Positives = 37/75 (49%)
Query: 66 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 125
+ N+ +V+ D L +FS+ G V K F + ALIQ V+ AV A L H +
Sbjct: 455 LSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDL- 513
Query: 126 DGGFCKLHISYSRHT 140
G L +S+S+ T
Sbjct: 514 -GENHHLRVSFSKST 527
>UNIPROTKB|K7EK45 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AC006273 HGNC:HGNC:9583
Ensembl:ENST00000585956 Uniprot:K7EK45
Length = 256
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 66/136 (48%), Positives = 83/136 (61%)
Query: 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 117
+S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +A AK
Sbjct: 5 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKL 64
Query: 118 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMV 177
+L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q
Sbjct: 65 SLDGQNIYNA-CCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQTMAAAF 122
Query: 178 GA----TANQYNGAQF 189
GA +A+ Y GA F
Sbjct: 123 GAPGIISASPYAGAGF 138
Score = 99 (39.9 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 4 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--AIDASGQLSVGLDG 52
CTLRI +S T L+VK+ + +SRDYT P LP S ++D + + G G
Sbjct: 76 CTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGAPG 126
Score = 50 (22.7 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 16/65 (24%), Positives = 31/65 (47%)
Query: 80 MVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 139
++ S P + +F+K AL+Q D A +A L GH ++ + I+ S+H
Sbjct: 190 LLVSNLNPERVKILFNKKEN--ALVQMADGNQAQLAMSHLNGHKLHGK---PIRITLSKH 244
Query: 140 TDLSI 144
++ +
Sbjct: 245 QNVQL 249
>UNIPROTKB|Q8WN55 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=ISS]
[GO:0051148 "negative regulation of muscle cell differentiation"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0048025 "negative regulation of
mRNA splicing, via spliceosome" evidence=IEA] [GO:0036002 "pre-mRNA
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048025 GO:GO:0000381 GO:GO:0036002 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 EMBL:AF445640 IPI:IPI00712263
RefSeq:NP_776867.1 UniGene:Bt.9031 ProteinModelPortal:Q8WN55
SMR:Q8WN55 PRIDE:Q8WN55 Ensembl:ENSBTAT00000066209 GeneID:282018
KEGG:bta:282018 CTD:5725 HOVERGEN:HBG069548 KO:K13218 OMA:SEECAQT
NextBio:20805882 ArrayExpress:Q8WN55 GO:GO:0051148 Uniprot:Q8WN55
Length = 531
Score = 284 (105.0 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 78/206 (37%), Positives = 109/206 (52%)
Query: 18 VKFQSHRS-RDYTNPYLPVAPSAIDA-----SGQLSVG-----LD-GKKLEPESNVLLAS 65
++F +H+ + ++P A +A+ A SG L++ +D G + +S VL
Sbjct: 128 IQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRII 187
Query: 66 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 125
+EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +A AK +L+G IY
Sbjct: 188 VENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY 247
Query: 126 DGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYN 185
+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q G + +
Sbjct: 248 NA-CCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQTMAAAFGLSVPNVH 305
Query: 186 GAQFAXXXXXXXXXXXXTAAGWGAVP 211
GA AAG A+P
Sbjct: 306 GA--LAPLAIPSAAAAAAAAGRIAIP 329
>UNIPROTKB|P26599 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0051148 "negative regulation of
muscle cell differentiation" evidence=IDA] [GO:0036002 "pre-mRNA
binding" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0005730 "nucleolus" evidence=TAS] [GO:0008187 "poly-pyrimidine
tract binding" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0000398 EMBL:CH471242
GO:GO:0048025 GO:GO:0000381 GO:GO:0008187 GO:GO:0036002
TIGRFAMs:TIGR01649 CTD:5725 HOVERGEN:HBG069548 KO:K13218
OMA:SEECAQT GO:GO:0051148 EMBL:X62006 EMBL:X65371 EMBL:X65372
EMBL:X60648 EMBL:X66975 EMBL:BT006819 EMBL:AC006273 EMBL:BC002397
EMBL:BC004383 EMBL:BC013694 IPI:IPI00179964 IPI:IPI00183626
IPI:IPI00334175 PIR:S23016 RefSeq:NP_002810.1 RefSeq:NP_114367.1
RefSeq:NP_114368.1 UniGene:Hs.172550 PDB:1QM9 PDB:1SJQ PDB:1SJR
PDB:2AD9 PDB:2ADB PDB:2ADC PDB:2EVZ PDB:3ZZY PDB:3ZZZ PDBsum:1QM9
PDBsum:1SJQ PDBsum:1SJR PDBsum:2AD9 PDBsum:2ADB PDBsum:2ADC
PDBsum:2EVZ PDBsum:3ZZY PDBsum:3ZZZ ProteinModelPortal:P26599
SMR:P26599 IntAct:P26599 MINT:MINT-1348690 STRING:P26599
PhosphoSite:P26599 DMDM:131528 SWISS-2DPAGE:P26599 PaxDb:P26599
PRIDE:P26599 DNASU:5725 Ensembl:ENST00000349038
Ensembl:ENST00000356948 Ensembl:ENST00000394601 GeneID:5725
KEGG:hsa:5725 UCSC:uc002lpq.2 UCSC:uc002lpr.2 GeneCards:GC19P000797
H-InvDB:HIX0137476 HGNC:HGNC:9583 HPA:CAB013507 MIM:600693
neXtProt:NX_P26599 PharmGKB:PA33934 eggNOG:NOG263741
HOGENOM:HOG000231699 ChEMBL:CHEMBL1293230 EvolutionaryTrace:P26599
GenomeRNAi:5725 NextBio:22252 PMAP-CutDB:P26599 ArrayExpress:P26599
Bgee:P26599 CleanEx:HS_PTBP1 Genevestigator:P26599
GermOnline:ENSG00000011304 Uniprot:P26599
Length = 531
Score = 284 (105.0 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 78/206 (37%), Positives = 109/206 (52%)
Query: 18 VKFQSHRS-RDYTNPYLPVAPSAIDA-----SGQLSVG-----LD-GKKLEPESNVLLAS 65
++F +H+ + ++P A +A+ A SG L++ +D G + +S VL
Sbjct: 128 IQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRII 187
Query: 66 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 125
+EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +A AK +L+G IY
Sbjct: 188 VENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY 247
Query: 126 DGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYN 185
+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q G + +
Sbjct: 248 NA-CCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQTMAAAFGLSVPNVH 305
Query: 186 GAQFAXXXXXXXXXXXXTAAGWGAVP 211
GA AAG A+P
Sbjct: 306 GA--LAPLAIPSAAAAAAAAGRIAIP 329
>UNIPROTKB|F1S6R7 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9823 "Sus scrofa" [GO:0051148 "negative regulation of
muscle cell differentiation" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0048025 GO:GO:0000381
GO:GO:0036002 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
OMA:SEECAQT GO:GO:0051148 EMBL:FP015903 Ensembl:ENSSSCT00000014665
Uniprot:F1S6R7
Length = 557
Score = 283 (104.7 bits), Expect = 3.9e-24, P = 3.9e-24
Identities = 76/188 (40%), Positives = 107/188 (56%)
Query: 18 VKFQSHRS-RDYTNPYLPVAPSAIDA-----SGQLSVG-----LD-GKKLEPESNVLLAS 65
++F +H+ + ++P A +A+ A SG L++ +D G + +S VL
Sbjct: 128 IQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRII 187
Query: 66 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 125
+EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +A AK +L+G IY
Sbjct: 188 VENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY 247
Query: 126 DGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGA----TA 181
+ C L I +S+ T L++K NND+SRDYT P P ++QPS L Q GA +A
Sbjct: 248 NA-CCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDNQPS-LDQTMAAAFGAPGIMSA 305
Query: 182 NQYNGAQF 189
+ Y GA F
Sbjct: 306 SPYAGAGF 313
>UNIPROTKB|Q29099 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9823 "Sus scrofa" [GO:0051148 "negative regulation of
muscle cell differentiation" evidence=ISS] [GO:0000381 "regulation
of alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0048025 GO:GO:0000381 TIGRFAMs:TIGR01649
CTD:5725 HOVERGEN:HBG069548 KO:K13218 GO:GO:0051148
eggNOG:NOG263741 HOGENOM:HOG000231699 EMBL:X93009 PIR:S68857
RefSeq:NP_999396.1 UniGene:Ssc.16210 ProteinModelPortal:Q29099
SMR:Q29099 STRING:Q29099 PRIDE:Q29099 GeneID:397461 KEGG:ssc:397461
OrthoDB:EOG4GMTXQ Uniprot:Q29099
Length = 557
Score = 283 (104.7 bits), Expect = 3.9e-24, P = 3.9e-24
Identities = 76/188 (40%), Positives = 107/188 (56%)
Query: 18 VKFQSHRS-RDYTNPYLPVAPSAIDA-----SGQLSVG-----LD-GKKLEPESNVLLAS 65
++F +H+ + ++P A +A+ A SG L++ +D G + +S VL
Sbjct: 128 IQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRII 187
Query: 66 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 125
+EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +A AK +L+G IY
Sbjct: 188 VENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY 247
Query: 126 DGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGA----TA 181
+ C L I +S+ T L++K NND+SRDYT P P ++QPS L Q GA +A
Sbjct: 248 NA-CCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDNQPS-LDQTMAAAFGAPGIMSA 305
Query: 182 NQYNGAQF 189
+ Y GA F
Sbjct: 306 SPYAGAGF 313
>RGD|62047 [details] [associations]
symbol:Ptbp1 "polypyrimidine tract binding protein 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO;ISS] [GO:0003697 "single-stranded DNA
binding" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA;TAS]
[GO:0004519 "endonuclease activity" evidence=TAS] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0033119
"negative regulation of RNA splicing" evidence=ISO] [GO:0036002
"pre-mRNA binding" evidence=ISO] [GO:0048025 "negative regulation of
mRNA splicing, via spliceosome" evidence=ISO;ISS] [GO:0051148
"negative regulation of muscle cell differentiation"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:62047
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0004519
GO:GO:0048025 GO:GO:0000381 TIGRFAMs:TIGR01649 HOVERGEN:HBG069548
GO:GO:0051148 eggNOG:NOG263741 HOGENOM:HOG000231699 EMBL:X60789
EMBL:X60790 EMBL:X74565 IPI:IPI00231555 IPI:IPI00390239 PIR:S15552
PIR:S36629 UniGene:Rn.64440 ProteinModelPortal:Q00438 SMR:Q00438
STRING:Q00438 PhosphoSite:Q00438 PRIDE:Q00438 UCSC:RGD:62047
InParanoid:Q00438 ChEMBL:CHEMBL2786 NextBio:609388
ArrayExpress:Q00438 Genevestigator:Q00438
GermOnline:ENSRNOG00000010448 Uniprot:Q00438
Length = 555
Score = 282 (104.3 bits), Expect = 5.0e-24, P = 5.0e-24
Identities = 76/186 (40%), Positives = 106/186 (56%)
Query: 18 VKFQSHRS-RDYTNPYLPVAPSAIDA-----SGQLSVG-----LD-GKKLEPESNVLLAS 65
++F +H+ + ++P A +A+ A SG L++ +D G + +S VL
Sbjct: 127 IQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRII 186
Query: 66 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 125
+EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +A AK +L+G IY
Sbjct: 187 VENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY 246
Query: 126 DGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGA----TA 181
+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q GA +A
Sbjct: 247 NA-CCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQTMAAAFGAPGIMSA 304
Query: 182 NQYNGA 187
+ Y GA
Sbjct: 305 SPYAGA 310
>MGI|MGI:97791 [details] [associations]
symbol:Ptbp1 "polypyrimidine tract binding protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0033119 "negative regulation of RNA
splicing" evidence=ISO] [GO:0036002 "pre-mRNA binding"
evidence=ISO] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISO] [GO:0051148 "negative regulation of
muscle cell differentiation" evidence=ISO] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
MGI:MGI:97791 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0048025
GO:GO:0000381 TIGRFAMs:TIGR01649 HOVERGEN:HBG069548 GO:GO:0051148
eggNOG:NOG263741 HOGENOM:HOG000231699 EMBL:X52101 IPI:IPI00749991
UniGene:Mm.265610 ProteinModelPortal:P17225 SMR:P17225
MINT:MINT-1862139 STRING:P17225 PhosphoSite:P17225 PaxDb:P17225
PRIDE:P17225 ChiTaRS:PTBP1 CleanEx:MM_PTBP1 Genevestigator:P17225
GermOnline:ENSMUSG00000006498 Uniprot:P17225
Length = 527
Score = 280 (103.6 bits), Expect = 6.9e-24, P = 6.9e-24
Identities = 73/182 (40%), Positives = 103/182 (56%)
Query: 18 VKFQSHRS-RDYTNPYLPVAPSAIDA-----SGQLSVG-----LD-GKKLEPESNVLLAS 65
++F +H+ + ++P A +A+ A SG L++ +D G + +S VL
Sbjct: 127 IQFSNHKELKTDSSPNQVRAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRII 186
Query: 66 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 125
+EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +A AK +L+G IY
Sbjct: 187 VENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY 246
Query: 126 DGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYN 185
+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q G + +
Sbjct: 247 NA-CCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQTMAAAFGLSVPNVH 304
Query: 186 GA 187
GA
Sbjct: 305 GA 306
Score = 99 (39.9 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 4 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--AIDASGQLSVGL 50
CTLRI +S T L+VK+ + +SRDYT P LP S ++D + + GL
Sbjct: 250 CTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGL 298
Score = 69 (29.3 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 25/75 (33%), Positives = 37/75 (49%)
Query: 66 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 125
+ N+ +V+ D L +FS+ G V K F + ALIQ V+ AV A L H +
Sbjct: 454 LSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDL- 512
Query: 126 DGGFCKLHISYSRHT 140
G L +S+S+ T
Sbjct: 513 -GENHHLRVSFSKST 526
>UNIPROTKB|F1LM18 [details] [associations]
symbol:Ptbp1 "Polypyrimidine tract-binding protein 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:62047 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 IPI:IPI00562850
Ensembl:ENSRNOT00000044865 ArrayExpress:F1LM18 Uniprot:F1LM18
Length = 554
Score = 278 (102.9 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 75/185 (40%), Positives = 105/185 (56%)
Query: 18 VKFQSHRS-RDYTNPYLPVAPSAIDA-----SGQLSVG-----LD-GKKLEPESNVLLAS 65
++F +H+ + ++P A +A+ A SG L++ +D G + +S VL
Sbjct: 127 IQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRII 186
Query: 66 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 125
+EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +A AK +L+G IY
Sbjct: 187 VENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIY 246
Query: 126 DGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGA----TA 181
+ C L I +S+ T L++K NND+SRDYT P P +SQPS L Q GA +A
Sbjct: 247 NA-CCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPS-LDQTMAAAFGAPGIMSA 304
Query: 182 NQYNG 186
+ Y G
Sbjct: 305 SPYAG 309
>RGD|621671 [details] [associations]
symbol:Ptbp3 "polypyrimidine tract binding protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0033119 "negative
regulation of RNA splicing" evidence=IEA;ISO] [GO:0043249
"erythrocyte maturation" evidence=IEA] [GO:0045595 "regulation of
cell differentiation" evidence=IMP] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
RGD:621671 GO:GO:0005634 GO:GO:0045595 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0033119
GO:GO:0043249 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
HOVERGEN:HBG069548 eggNOG:NOG263741 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ CTD:9991 OMA:PPSVTMD EMBL:AB023966
IPI:IPI00326775 RefSeq:NP_112636.1 UniGene:Rn.162818
ProteinModelPortal:Q9Z118 SMR:Q9Z118 STRING:Q9Z118 PRIDE:Q9Z118
Ensembl:ENSRNOT00000022107 GeneID:83515 KEGG:rno:83515
UCSC:RGD:621671 InParanoid:Q9Z118 NextBio:615974
Genevestigator:Q9Z118 GermOnline:ENSRNOG00000016334 Uniprot:Q9Z118
Length = 523
Score = 276 (102.2 bits), Expect = 1.9e-23, P = 1.9e-23
Identities = 83/214 (38%), Positives = 111/214 (51%)
Query: 8 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSV-GL---DGKKLEPESNVLL 63
I YS H +L +++R L A SA+ SG LS+ G +G L +S VL
Sbjct: 99 IQYSNHRELKTDNLPNQAR--AQAALQ-AVSAVQ-SGNLSLPGATSNEGTLLPGQSPVLR 154
Query: 64 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC 123
IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D A AK AL+G
Sbjct: 155 IIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKMALDGQN 214
Query: 124 IYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMV----GA 179
IY+ C L I +S+ T L++K NND+SRD+T P + QPS+ + P+ G
Sbjct: 215 IYNA-CCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL--EPPMAAAFGAPGI 271
Query: 180 TANQYNGAQ-FAXXXXXXXXXXXXTAAGWGAVPP 212
++ Y GA FA +A GA+ P
Sbjct: 272 MSSPYAGAAGFAPAIAFPQAAGLSVSAVPGALGP 305
Score = 85 (35.0 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 31/129 (24%), Positives = 60/129 (46%)
Query: 34 PVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA- 92
P+ ++ SG++++ G P ++VLL + N + +T L ++F +G V ++
Sbjct: 305 PLTLTSSAVSGRMAI--PGASGIPGNSVLLVTNLNPDF-ITPHGLFILFGVYGDVHRVKI 361
Query: 93 MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSR 152
MF+K AL+Q D A +A L G +Y G + +S + L + D+
Sbjct: 362 MFNKKEN--ALVQMADASQAQIAMNHLSGQRLY-GKVLRATLSKHQAVQLPREGQEDQGL 418
Query: 153 DYTLPSTPM 161
++P+
Sbjct: 419 TKDFSNSPL 427
Score = 81 (33.6 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 4 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 34
CTLRI +S T L+VK+ + +SRD+T LP
Sbjct: 220 CTLRIDFSKLTSLNVKYNNDKSRDFTRLDLP 250
>UNIPROTKB|F1P5K0 [details] [associations]
symbol:PTBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
EMBL:AADN02066656 EMBL:AADN02066657 EMBL:AADN02066658
EMBL:AADN02066659 IPI:IPI00571435 Ensembl:ENSGALT00000003039
ArrayExpress:F1P5K0 Uniprot:F1P5K0
Length = 527
Score = 276 (102.2 bits), Expect = 1.9e-23, P = 1.9e-23
Identities = 71/164 (43%), Positives = 91/164 (55%)
Query: 30 NPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ 89
N LP +A+DA G + +S VL +EN+ Y VTLDVLH +FS FG V
Sbjct: 132 NLALPAPAAAVDA---------GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVL 182
Query: 90 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 149
KI F KN QAL+QY D +A AK +L+G IY+ C L I +S+ T L++K NND
Sbjct: 183 KIITFTKNNQFQALLQYADPMSAQHAKLSLDGQNIYNA-CCTLRIDFSKLTSLNVKYNND 241
Query: 150 RSRDYTLPSTPMVNSQPSILGQQPVPMVGAT----ANQYNGAQF 189
+SRDYT P P ++QP L Q GA A+ Y GA F
Sbjct: 242 KSRDYTRPDLPSGDNQPP-LDQTMAAAFGAPGIIPASPYAGAGF 284
Score = 95 (38.5 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 4 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 34
CTLRI +S T L+VK+ + +SRDYT P LP
Sbjct: 222 CTLRIDFSKLTSLNVKYNNDKSRDYTRPDLP 252
Score = 84 (34.6 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 33/114 (28%), Positives = 59/114 (51%)
Query: 33 LPVAPSAIDASGQLSV-GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI 91
+P A +A A+G++++ GL G ++VLL S N + VT L ++F +G VQ++
Sbjct: 310 IPAAAAAA-AAGRIAIPGLAGAG----NSVLLVSNLNPE-RVTPQCLFILFGVYGDVQRV 363
Query: 92 A-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 144
+F+K AL+Q D A +A L G ++ + I+ S+H + +
Sbjct: 364 KILFNKKEN--ALVQMADGNQAQLAMSHLNGQKLHGK---PIRITLSKHQTVQL 412
>UNIPROTKB|E1BVR1 [details] [associations]
symbol:PTBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0036002 "pre-mRNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0051148 "negative regulation of
muscle cell differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048025 GO:GO:0000381 GO:GO:0036002 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 OMA:SEECAQT GO:GO:0051148
EMBL:AADN02066656 EMBL:AADN02066657 EMBL:AADN02066658
EMBL:AADN02066659 IPI:IPI00684956 ProteinModelPortal:E1BVR1
Ensembl:ENSGALT00000003042 ArrayExpress:E1BVR1 Uniprot:E1BVR1
Length = 532
Score = 276 (102.2 bits), Expect = 2.0e-23, P = 2.0e-23
Identities = 71/164 (43%), Positives = 91/164 (55%)
Query: 30 NPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ 89
N LP +A+DA G + +S VL +EN+ Y VTLDVLH +FS FG V
Sbjct: 137 NLALPAPAAAVDA---------GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVL 187
Query: 90 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 149
KI F KN QAL+QY D +A AK +L+G IY+ C L I +S+ T L++K NND
Sbjct: 188 KIITFTKNNQFQALLQYADPMSAQHAKLSLDGQNIYNA-CCTLRIDFSKLTSLNVKYNND 246
Query: 150 RSRDYTLPSTPMVNSQPSILGQQPVPMVGAT----ANQYNGAQF 189
+SRDYT P P ++QP L Q GA A+ Y GA F
Sbjct: 247 KSRDYTRPDLPSGDNQPP-LDQTMAAAFGAPGIIPASPYAGAGF 289
Score = 95 (38.5 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 4 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 34
CTLRI +S T L+VK+ + +SRDYT P LP
Sbjct: 227 CTLRIDFSKLTSLNVKYNNDKSRDYTRPDLP 257
Score = 84 (34.6 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 33/114 (28%), Positives = 59/114 (51%)
Query: 33 LPVAPSAIDASGQLSV-GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI 91
+P A +A A+G++++ GL G ++VLL S N + VT L ++F +G VQ++
Sbjct: 315 IPAAAAAA-AAGRIAIPGLAGAG----NSVLLVSNLNPE-RVTPQCLFILFGVYGDVQRV 368
Query: 92 A-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 144
+F+K AL+Q D A +A L G ++ + I+ S+H + +
Sbjct: 369 KILFNKKEN--ALVQMADGNQAQLAMSHLNGQKLHGK---PIRITLSKHQTVQL 417
>MGI|MGI:1923334 [details] [associations]
symbol:Ptbp3 "polypyrimidine tract binding protein 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0033119 "negative regulation of
RNA splicing" evidence=ISO] [GO:0043249 "erythrocyte maturation"
evidence=IEA] [GO:0045595 "regulation of cell differentiation"
evidence=ISO] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1923334
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043249 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 HOVERGEN:HBG069548 eggNOG:NOG263741
HOGENOM:HOG000231699 OrthoDB:EOG4GMTXQ CTD:9991 EMBL:AK033732
EMBL:AK088560 EMBL:AL824704 EMBL:BC006638 EMBL:BC057641
IPI:IPI00221840 IPI:IPI00975110 RefSeq:NP_659153.2
RefSeq:NP_835458.1 UniGene:Mm.331640 ProteinModelPortal:Q8BHD7
SMR:Q8BHD7 STRING:Q8BHD7 PhosphoSite:Q8BHD7 PaxDb:Q8BHD7
PRIDE:Q8BHD7 Ensembl:ENSMUST00000030076 Ensembl:ENSMUST00000148331
Ensembl:ENSMUST00000172768 GeneID:230257 KEGG:mmu:230257
UCSC:uc008szw.2 UCSC:uc008szx.2 InParanoid:A2ANH0 ChiTaRS:PTBP3
NextBio:379861 Bgee:Q8BHD7 CleanEx:MM_ROD1 Genevestigator:Q8BHD7
GermOnline:ENSMUSG00000028382 Uniprot:Q8BHD7
Length = 523
Score = 274 (101.5 bits), Expect = 3.1e-23, P = 3.1e-23
Identities = 83/214 (38%), Positives = 110/214 (51%)
Query: 8 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSV-GL---DGKKLEPESNVLL 63
I YS H +L +++R L A SA+ SG LS+ G +G L +S VL
Sbjct: 99 IQYSNHRELKTDNLPNQAR--AQAALQ-AVSAVQ-SGNLSLPGATANEGTLLPGQSPVLR 154
Query: 64 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC 123
IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D A AK AL+G
Sbjct: 155 IIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAQYAKMALDGQN 214
Query: 124 IYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMV----GA 179
IY+ C L I +S+ T L++K NND+SRD+T P + QPS+ + P+ G
Sbjct: 215 IYNA-CCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL--EPPMAAAFGAPGI 271
Query: 180 TANQYNGAQ-FAXXXXXXXXXXXXTAAGWGAVPP 212
++ Y GA FA A GA+ P
Sbjct: 272 MSSPYAGAAGFAPAIAFPQAAGLSVPAVPGALGP 305
Score = 85 (35.0 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 32/130 (24%), Positives = 61/130 (46%)
Query: 34 PVAPSAIDASGQLSV-GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 92
P+ ++ SG++++ G G P ++VLL + N + +T L ++F +G V ++
Sbjct: 305 PLTLTSSAVSGRMAIPGASGM---PGNSVLLVTNLNPDF-ITPHGLFILFGVYGDVHRVK 360
Query: 93 -MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRS 151
MF+K AL+Q D A +A L G +Y G + +S + L + D+
Sbjct: 361 IMFNKKEN--ALVQMADASQAQLAMNHLSGQRLY-GKVLRATLSKHQAVQLPREGQEDQG 417
Query: 152 RDYTLPSTPM 161
++P+
Sbjct: 418 LTKDFSNSPL 427
Score = 81 (33.6 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 4 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 34
CTLRI +S T L+VK+ + +SRD+T LP
Sbjct: 220 CTLRIDFSKLTSLNVKYNNDKSRDFTRLDLP 250
>UNIPROTKB|B4DI28 [details] [associations]
symbol:PTBP2 "cDNA FLJ55578, highly similar to
Polypyrimidine tract-binding protein 2" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01649 HOVERGEN:HBG069548
HOGENOM:HOG000231699 EMBL:AL357150 IPI:IPI00647067
UniGene:Hs.269895 UniGene:Hs.596061 HGNC:HGNC:17662 ChiTaRS:PTBP2
EMBL:AK295384 SMR:B4DI28 STRING:B4DI28 Ensembl:ENST00000541987
Uniprot:B4DI28
Length = 325
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 66/162 (40%), Positives = 88/162 (54%)
Query: 8 ITYSAHTDLSV-KFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASI 66
I YS H +L + R++ V + SG +V + +S VL I
Sbjct: 97 IQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGT-TVS-ESAVTPAQSPVLRIII 154
Query: 67 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 126
+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK AL+G IY+
Sbjct: 155 DNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYN 214
Query: 127 GGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 168
C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 215 A-CCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 255
>UNIPROTKB|Q06A95 [details] [associations]
symbol:ROD1 "ROD1" species:9823 "Sus scrofa" [GO:0033119
"negative regulation of RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0033119 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 HOVERGEN:HBG069548 eggNOG:NOG263741
HOGENOM:HOG000231699 OrthoDB:EOG4GMTXQ OMA:PPSVTMD EMBL:CU234201
EMBL:DQ972969 RefSeq:NP_001070683.1 UniGene:Ssc.16910 SMR:Q06A95
Ensembl:ENSSSCT00000006012 GeneID:768100 KEGG:ssc:768100
CTD:100701891 Uniprot:Q06A95
Length = 523
Score = 268 (99.4 bits), Expect = 1.4e-22, P = 1.4e-22
Identities = 81/210 (38%), Positives = 107/210 (50%)
Query: 8 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSV-GL---DGKKLEPESNVLL 63
I YS H +L +++R L A SA+ SG L + G +G L +S VL
Sbjct: 97 IQYSNHRELKTDNLPNQAR--AQAALQ-AVSAVQ-SGSLGLPGAPTNEGTILPGQSPVLR 152
Query: 64 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC 123
IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D A AK AL+G
Sbjct: 153 IIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPLNAHYAKMALDGQN 212
Query: 124 IYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMV----GA 179
IY+ C L I +S+ T L++K NND+SRD+T P + QPS+ + P+ G
Sbjct: 213 IYNA-CCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL--EPPMAAAFGAPGI 269
Query: 180 TANQYNGAQ-FAXXXXXXXXXXXXTAAGWG 208
++ Y GA FA AG G
Sbjct: 270 ISSPYAGAAGFAPAIGFPQATGLSVPAGLG 299
Score = 81 (33.6 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 4 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 34
CTLRI +S T L+VK+ + +SRD+T LP
Sbjct: 218 CTLRIDFSKLTSLNVKYNNDKSRDFTRLDLP 248
Score = 78 (32.5 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 33/129 (25%), Positives = 57/129 (44%)
Query: 35 VAPSAIDASGQLS-VGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA- 92
+ P AI +S + + G P ++VLL + N VT L ++F +G V ++
Sbjct: 303 LGPLAITSSAVTGRMAMPGTGGIPGNSVLLVTNLNPDL-VTPHGLFILFGVYGDVHRVKI 361
Query: 93 MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSR 152
MF+K AL+Q D A +A L G +Y G + +S + L + D+
Sbjct: 362 MFNKKEN--ALVQMADANQAQLAMNHLSGQRLY-GKVLRATLSKHQAVQLPREGQEDQGL 418
Query: 153 DYTLPSTPM 161
++P+
Sbjct: 419 TKDFSNSPL 427
>UNIPROTKB|O95758 [details] [associations]
symbol:PTBP3 "Polypyrimidine tract-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0043249 "erythrocyte maturation"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0045595 "regulation of cell
differentiation" evidence=IEA] [GO:0033119 "negative regulation of
RNA splicing" evidence=IDA] [GO:0009653 "anatomical structure
morphogenesis" evidence=TAS] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0045595 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471105
GO:GO:0033119 GO:GO:0009653 GO:GO:0043249 TIGRFAMs:TIGR01649
HOVERGEN:HBG069548 eggNOG:NOG263741 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ EMBL:AK001685 EMBL:AK302558 EMBL:CR749471
EMBL:AL158824 EMBL:AL359073 EMBL:BC039896 EMBL:BC044585
EMBL:BI463123 EMBL:AB023967 IPI:IPI00159072 IPI:IPI00384710
IPI:IPI00470879 IPI:IPI00640632 IPI:IPI00915287 IPI:IPI00915299
IPI:IPI00915400 RefSeq:NP_001157260.1 RefSeq:NP_001157262.1
RefSeq:NP_001231826.1 RefSeq:NP_001231827.1 RefSeq:NP_005147.3
UniGene:Hs.269988 ProteinModelPortal:O95758 SMR:O95758
IntAct:O95758 STRING:O95758 PhosphoSite:O95758 PaxDb:O95758
PRIDE:O95758 Ensembl:ENST00000210227 Ensembl:ENST00000334318
Ensembl:ENST00000343327 Ensembl:ENST00000374255
Ensembl:ENST00000374257 Ensembl:ENST00000458258 GeneID:9991
KEGG:hsa:9991 UCSC:uc004bfv.3 UCSC:uc004bfw.3 UCSC:uc004bfx.3
UCSC:uc004bfz.3 CTD:9991 GeneCards:GC09M114981 H-InvDB:HIX0008290
HGNC:HGNC:10253 MIM:607527 neXtProt:NX_O95758 PharmGKB:PA34625
OMA:PPSVTMD GenomeRNAi:9991 NextBio:37743 ArrayExpress:O95758
Bgee:O95758 CleanEx:HS_ROD1 Genevestigator:O95758
GermOnline:ENSG00000119314 Uniprot:O95758
Length = 552
Score = 268 (99.4 bits), Expect = 1.7e-22, P = 1.7e-22
Identities = 72/174 (41%), Positives = 94/174 (54%)
Query: 8 ITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGL--DGKKLEPESNVLLAS 65
I YS H +L +++R L + S LS G +G L +S VL
Sbjct: 128 IQYSNHRELKTDNLPNQAR--AQAALQAVSAVQSGSLALSGGPSNEGTVLPGQSPVLRII 185
Query: 66 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 125
IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D A AK AL+G IY
Sbjct: 186 IENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVNAHYAKMALDGQNIY 245
Query: 126 DGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGA 179
+ C L I +S+ T L++K NND+SRD+T P + QPS+ +P PM A
Sbjct: 246 NA-CCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL---EP-PMAAA 294
Score = 81 (33.6 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 4 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 34
CTLRI +S T L+VK+ + +SRD+T LP
Sbjct: 249 CTLRIDFSKLTSLNVKYNNDKSRDFTRLDLP 279
Score = 78 (32.5 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 32/130 (24%), Positives = 60/130 (46%)
Query: 33 LPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 92
L + SA+ +G++++ G P ++VLL + N +T L ++F +G V ++
Sbjct: 335 LTITSSAV--TGRMAI--PGASGIPGNSVLLVTNLNPDL-ITPHGLFILFGVYGDVHRVK 389
Query: 93 -MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRS 151
MF+K AL+Q D A +A L G +Y G + +S + L + D+
Sbjct: 390 IMFNKKEN--ALVQMADANQAQLAMNHLSGQRLY-GKVLRATLSKHQAVQLPREGQEDQG 446
Query: 152 RDYTLPSTPM 161
++P+
Sbjct: 447 LTKDFSNSPL 456
>UNIPROTKB|F1S549 [details] [associations]
symbol:LOC100515203 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 EMBL:FP085536 EMBL:CU137694
Ensembl:ENSSSCT00000007533 Uniprot:F1S549
Length = 401
Score = 262 (97.3 bits), Expect = 1.7e-22, P = 1.7e-22
Identities = 56/111 (50%), Positives = 71/111 (63%)
Query: 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 117
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 33 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 92
Query: 118 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 168
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 93 ALDGQNIYNA-CCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 142
Score = 91 (37.1 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 4 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 34
CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 104 CTLRIDFSKLVNLNVKYNNDKSRDYTRPDLP 134
Score = 79 (32.9 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 32/113 (28%), Positives = 54/113 (47%)
Query: 33 LPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 92
+P A +A A+ VG+ G + VLL S N + VT L +F +G VQ++
Sbjct: 181 IPNAAAAAAAAAAGRVGMPGVSAGGNT-VLLVSNLNEEM-VTPQSLFTLFGVYGDVQRVK 238
Query: 93 -MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 144
+++K ALIQ D + +A L G +Y G + ++ S+H + +
Sbjct: 239 ILYNKKDS--ALIQMADGNQSQLAMNHLNGQKMY-GKI--IRVTLSKHQTVQL 286
>UNIPROTKB|F1MPG6 [details] [associations]
symbol:F1MPG6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0033119 "negative regulation of RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0033119 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
OMA:PPSVTMD EMBL:DAAA02024547 IPI:IPI00700660
Ensembl:ENSBTAT00000022272 Uniprot:F1MPG6
Length = 523
Score = 267 (99.0 bits), Expect = 1.8e-22, P = 1.8e-22
Identities = 78/206 (37%), Positives = 106/206 (51%)
Query: 18 VKFQSHRSRDYTN-PYLPVAPSAIDA-----SGQLSV-GL---DGKKLEPESNVLLASIE 67
+++ +HR N P A +A+ A SG L++ G +G L +S VL IE
Sbjct: 97 IQYSNHRELKTDNLPNQARAQAALQAVSTVQSGSLALPGAPTNEGTILPGQSPVLRIIIE 156
Query: 68 NMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 127
N+ Y VTL+VLH +FS FG V KI F KN QAL+QY D A AK AL+G IY+
Sbjct: 157 NLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPLNAHYAKMALDGQNIYNA 216
Query: 128 GFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMV----GATANQ 183
C L I +S+ T L++K NND+SRD+T P + QPS+ + P+ G ++
Sbjct: 217 -CCTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL--EPPMAAAFGAPGIISSP 273
Query: 184 YNGAQ-FAXXXXXXXXXXXXTAAGWG 208
Y GA FA AG G
Sbjct: 274 YAGAAGFAPAIGFPQATGLSVPAGLG 299
Score = 81 (33.6 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 4 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 34
CTLRI +S T L+VK+ + +SRD+T LP
Sbjct: 218 CTLRIDFSKLTSLNVKYNNDKSRDFTRLDLP 248
Score = 81 (33.6 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 32/130 (24%), Positives = 61/130 (46%)
Query: 34 PVAPSAIDASGQLSV-GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 92
P+A ++ +G++++ G G P ++VLL + N +T L ++F +G V ++
Sbjct: 305 PLAITSSAVTGRMAIPGAGGM---PGNSVLLVTNLNPDL-ITPHGLFILFGVYGDVHRVK 360
Query: 93 -MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRS 151
MF+K AL+Q D A +A L G +Y G + +S + L + D+
Sbjct: 361 IMFNKKEN--ALVQMADANQAQLAMNHLSGQRLY-GKVLRATLSKHQAVQLPREGQEDQG 417
Query: 152 RDYTLPSTPM 161
++P+
Sbjct: 418 LTKDFSNSPL 427
>UNIPROTKB|I3LP39 [details] [associations]
symbol:LOC100515203 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 EMBL:FP085536 EMBL:CU137694
Ensembl:ENSSSCT00000024275 Uniprot:I3LP39
Length = 405
Score = 262 (97.3 bits), Expect = 1.9e-22, P = 1.9e-22
Identities = 56/111 (50%), Positives = 71/111 (63%)
Query: 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 117
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 33 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 92
Query: 118 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 168
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 93 ALDGQNIYNA-CCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 142
Score = 91 (37.1 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 4 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 34
CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 104 CTLRIDFSKLVNLNVKYNNDKSRDYTRPDLP 134
Score = 79 (32.9 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 32/113 (28%), Positives = 54/113 (47%)
Query: 33 LPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 92
+P A +A A+ VG+ G + VLL S N + VT L +F +G VQ++
Sbjct: 185 IPNAAAAAAAAAAGRVGMPGVSAGGNT-VLLVSNLNEEM-VTPQSLFTLFGVYGDVQRVK 242
Query: 93 -MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 144
+++K ALIQ D + +A L G +Y G + ++ S+H + +
Sbjct: 243 ILYNKKDS--ALIQMADGNQSQLAMNHLNGQKMY-GKI--IRVTLSKHQTVQL 290
>UNIPROTKB|I3LDE4 [details] [associations]
symbol:LOC100515203 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:2000177 "regulation of neural precursor cell
proliferation" evidence=IEA] [GO:0033119 "negative regulation of
RNA splicing" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
OMA:QSQLAMS EMBL:FP085536 EMBL:CU137694 Ensembl:ENSSSCT00000022271
Uniprot:I3LDE4
Length = 411
Score = 262 (97.3 bits), Expect = 2.1e-22, P = 2.1e-22
Identities = 56/111 (50%), Positives = 71/111 (63%)
Query: 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 117
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 34 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 93
Query: 118 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 168
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 94 ALDGQNIYNA-CCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 143
Score = 91 (37.1 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 4 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 34
CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 105 CTLRIDFSKLVNLNVKYNNDKSRDYTRPDLP 135
Score = 79 (32.9 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 32/113 (28%), Positives = 54/113 (47%)
Query: 33 LPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 92
+P A +A A+ VG+ G + VLL S N + VT L +F +G VQ++
Sbjct: 191 IPNAAAAAAAAAAGRVGMPGVSAGGNT-VLLVSNLNEEM-VTPQSLFTLFGVYGDVQRVK 248
Query: 93 -MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 144
+++K ALIQ D + +A L G +Y G + ++ S+H + +
Sbjct: 249 ILYNKKDS--ALIQMADGNQSQLAMNHLNGQKMY-GKI--IRVTLSKHQTVQL 296
>TAIR|locus:2018630 [details] [associations]
symbol:PTB3 "polypyrimidine tract-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM;IEA;IDA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006417 "regulation of translation" evidence=IEP] [GO:0043484
"regulation of RNA splicing" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006417 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043484 GO:GO:0000932 EMBL:AC005687 KO:K14948
eggNOG:NOG263741 HOGENOM:HOG000231699 EMBL:BT014899 EMBL:BT015028
IPI:IPI00544143 RefSeq:NP_001077672.1 RefSeq:NP_175010.2
UniGene:At.22472 ProteinModelPortal:Q6ICX4 SMR:Q6ICX4 STRING:Q6ICX4
PaxDb:Q6ICX4 PRIDE:Q6ICX4 EnsemblPlants:AT1G43190.1
EnsemblPlants:AT1G43190.2 GeneID:840918 KEGG:ath:AT1G43190
GeneFarm:5076 TAIR:At1g43190 InParanoid:Q6ICX4 OMA:IKMHNHK
PhylomeDB:Q6ICX4 ProtClustDB:CLSN2690441 Genevestigator:Q6ICX4
GermOnline:AT1G43190 Uniprot:Q6ICX4
Length = 432
Score = 263 (97.6 bits), Expect = 2.2e-22, P = 2.2e-22
Identities = 54/111 (48%), Positives = 74/111 (66%)
Query: 50 LDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDV 109
+ G++ EP + +LL +I +M Y +T+DVLH VFS +G V+K+ F K+ G QALIQY
Sbjct: 90 IHGREDEP-NRILLVTIHHMLYPITVDVLHQVFSPYGFVEKLVTFQKSAGFQALIQYQVQ 148
Query: 110 QTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 160
Q A A+ AL+G IYDG C+L I +S +L + NNDRSRDYT P+ P
Sbjct: 149 QCAASARTALQGRNIYDG-CCQLDIQFSNLEELQVNYNNDRSRDYTNPNLP 198
>ZFIN|ZDB-GENE-091116-1 [details] [associations]
symbol:ptbp3 "polypyrimidine tract binding protein 3"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-091116-1 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 CTD:9991
OMA:PPSVTMD EMBL:BX510369 EMBL:CR931761 IPI:IPI00493597
RefSeq:XP_001335967.1 UniGene:Dr.40305 Ensembl:ENSDART00000040308
Ensembl:ENSDART00000146727 GeneID:798982 KEGG:dre:798982
NextBio:20933630 Uniprot:E7FB37
Length = 522
Score = 264 (98.0 bits), Expect = 3.8e-22, P = 3.8e-22
Identities = 68/184 (36%), Positives = 95/184 (51%)
Query: 8 ITYSAHTDLSVKFQSHRSRDYT--NPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLAS 65
I YS H +L ++ R V + SG + DG + +S VL
Sbjct: 98 IQYSNHRELKTDNLPNQGRAQAALQAVNAVHTGNMSLSGTATAS-DGGMMPGQSPVLRII 156
Query: 66 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 125
+EN+ Y V+L+VLH +FS FG V KI F KN QAL+QY D A AK AL+G IY
Sbjct: 157 VENLYYPVSLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPMNAHHAKVALDGQNIY 216
Query: 126 DGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI--LGQQPVPMVGATANQ 183
+G C L + +S+ T L++K NND+SRD+T P + QP++ Q G ++
Sbjct: 217 NG-CCTLRVEFSKLTSLNVKYNNDKSRDFTRLDLPSGDGQPTLDPTMQTAFGAPGIISSP 275
Query: 184 YNGA 187
Y GA
Sbjct: 276 YPGA 279
>UNIPROTKB|Q9UKA9 [details] [associations]
symbol:PTBP2 "Polypyrimidine tract-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IEA] [GO:2000177 "regulation of neural
precursor cell proliferation" evidence=IEA] [GO:0033119 "negative
regulation of RNA splicing" evidence=IDA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0033119 GO:GO:0006376 TIGRFAMs:TIGR01649 KO:K14948
HOVERGEN:HBG069548 eggNOG:NOG263741 EMBL:AF176085 EMBL:AB051232
EMBL:AB051233 EMBL:AF530580 EMBL:AF530581 EMBL:AF530582
EMBL:AF530583 EMBL:BK000526 EMBL:AL357150 EMBL:BC016582
IPI:IPI00254162 IPI:IPI00514064 IPI:IPI00641664 IPI:IPI00647067
IPI:IPI00743676 IPI:IPI00748295 RefSeq:NP_067013.1
UniGene:Hs.269895 UniGene:Hs.596061 PDB:2CQ1 PDBsum:2CQ1
ProteinModelPortal:Q9UKA9 SMR:Q9UKA9 IntAct:Q9UKA9
MINT:MINT-1483252 STRING:Q9UKA9 PhosphoSite:Q9UKA9 DMDM:74761983
REPRODUCTION-2DPAGE:IPI00647067 PaxDb:Q9UKA9 PRIDE:Q9UKA9
DNASU:58155 Ensembl:ENST00000236228 Ensembl:ENST00000370197
Ensembl:ENST00000370198 Ensembl:ENST00000426398 GeneID:58155
KEGG:hsa:58155 UCSC:uc001drn.2 UCSC:uc001dro.2 UCSC:uc001drq.3
UCSC:uc001drr.3 CTD:58155 GeneCards:GC01P097187 HGNC:HGNC:17662
HPA:HPA047420 MIM:608449 neXtProt:NX_Q9UKA9 PharmGKB:PA33935
OrthoDB:EOG473PSG ChiTaRS:PTBP2 EvolutionaryTrace:Q9UKA9
GenomeRNAi:58155 NextBio:64859 ArrayExpress:Q9UKA9 Bgee:Q9UKA9
CleanEx:HS_PTBP2 Genevestigator:Q9UKA9 GermOnline:ENSG00000117569
Uniprot:Q9UKA9
Length = 531
Score = 264 (98.0 bits), Expect = 4.0e-22, P = 4.0e-22
Identities = 66/162 (40%), Positives = 88/162 (54%)
Query: 8 ITYSAHTDLSV-KFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASI 66
I YS H +L + R++ V + SG +V + +S VL I
Sbjct: 128 IQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGT-TVS-ESAVTPAQSPVLRIII 185
Query: 67 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 126
+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK AL+G IY+
Sbjct: 186 DNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYN 245
Query: 127 GGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 168
C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 246 A-CCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 286
Score = 91 (37.1 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 4 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 34
CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 248 CTLRIDFSKLVNLNVKYNNDKSRDYTRPDLP 278
Score = 79 (32.9 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 32/113 (28%), Positives = 54/113 (47%)
Query: 33 LPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 92
+P A +A A+ VG+ G + VLL S N + VT L +F +G VQ++
Sbjct: 312 IPNAAAAAAAAAAGRVGMPGVSAGGNT-VLLVSNLNEEM-VTPQSLFTLFGVYGDVQRVK 369
Query: 93 -MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 144
+++K ALIQ D + +A L G +Y G + ++ S+H + +
Sbjct: 370 ILYNKKDS--ALIQMADGNQSQLAMNHLNGQKMY-GKI--IRVTLSKHQTVQL 417
>UNIPROTKB|F1NRD6 [details] [associations]
symbol:PTBP2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IEA] [GO:2000177 "regulation of neural precursor cell
proliferation" evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0033119
GO:GO:0006376 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
OMA:QSQLAMS EMBL:AADN02012892 IPI:IPI00602746
Ensembl:ENSGALT00000008906 ArrayExpress:F1NRD6 Uniprot:F1NRD6
Length = 532
Score = 264 (98.0 bits), Expect = 4.1e-22, P = 4.1e-22
Identities = 66/162 (40%), Positives = 88/162 (54%)
Query: 8 ITYSAHTDLSV-KFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASI 66
I YS H +L + R++ V + SG +V + +S VL I
Sbjct: 128 IQYSNHKELKTDNTLNQRAQAVLQAVTAVQATNAPISGT-TVS-ESAVTPAQSPVLRIII 185
Query: 67 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 126
+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK AL+G IY+
Sbjct: 186 DNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYN 245
Query: 127 GGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 168
C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 246 A-CCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 286
Score = 91 (37.1 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 4 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 34
CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 248 CTLRIDFSKLVNLNVKYNNDKSRDYTRPDLP 278
Score = 81 (33.6 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 32/113 (28%), Positives = 54/113 (47%)
Query: 33 LPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 92
+P A +A A+ VG+ G + VLL S N + VT L +F +G VQ++
Sbjct: 312 IPNAAAAAAAAAAGRVGMPGVSASGNT-VLLVSNLNEEM-VTPQSLFTLFGVYGDVQRVK 369
Query: 93 -MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 144
+++K ALIQ D + +A L G +Y G + ++ S+H + +
Sbjct: 370 ILYNKKDS--ALIQMADGNQSQLAMSHLNGQKMY-GKI--IRVTLSKHQTVQL 417
>UNIPROTKB|E2RSK4 [details] [associations]
symbol:PTBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000177 "regulation of neural precursor cell
proliferation" evidence=IEA] [GO:0033119 "negative regulation of
RNA splicing" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0033119 GO:GO:0006376 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 OMA:QSQLAMS EMBL:AAEX03004787
EMBL:AAEX03004788 EMBL:AAEX03004789 EMBL:AAEX03004790
ProteinModelPortal:E2RSK4 PRIDE:E2RSK4 Ensembl:ENSCAFT00000031985
Uniprot:E2RSK4
Length = 532
Score = 264 (98.0 bits), Expect = 4.1e-22, P = 4.1e-22
Identities = 66/162 (40%), Positives = 88/162 (54%)
Query: 8 ITYSAHTDLSV-KFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASI 66
I YS H +L + R++ V + SG +V + +S VL I
Sbjct: 128 IQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGT-TVS-ESAVTPAQSPVLRIII 185
Query: 67 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 126
+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK AL+G IY+
Sbjct: 186 DNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYN 245
Query: 127 GGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 168
C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 246 A-CCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 286
Score = 91 (37.1 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 4 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 34
CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 248 CTLRIDFSKLVNLNVKYNNDKSRDYTRPDLP 278
Score = 79 (32.9 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 32/113 (28%), Positives = 54/113 (47%)
Query: 33 LPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 92
+P A +A A+ VG+ G + VLL S N + VT L +F +G VQ++
Sbjct: 312 IPNAAAAAAAAAAGRVGMPGVSAGGNT-VLLVSNLNEEM-VTPQSLFTLFGVYGDVQRVK 369
Query: 93 -MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 144
+++K ALIQ D + +A L G +Y G + ++ S+H + +
Sbjct: 370 ILYNKKDS--ALIQMADGNQSQLAMNHLNGQKMY-GKI--IRVTLSKHQTVQL 417
>UNIPROTKB|B4DSS8 [details] [associations]
symbol:PTBP2 "Polypyrimidine tract-binding protein 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
HOVERGEN:HBG069548 HOGENOM:HOG000231699 EMBL:AL357150
IPI:IPI00254162 UniGene:Hs.269895 UniGene:Hs.596061 HGNC:HGNC:17662
ChiTaRS:PTBP2 OMA:QSQLAMS EMBL:AK299897 SMR:B4DSS8 STRING:B4DSS8
Ensembl:ENST00000394184 UCSC:uc010otz.1 Uniprot:B4DSS8
Length = 548
Score = 264 (98.0 bits), Expect = 4.4e-22, P = 4.4e-22
Identities = 66/162 (40%), Positives = 88/162 (54%)
Query: 8 ITYSAHTDLSV-KFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASI 66
I YS H +L + R++ V + SG +V + +S VL I
Sbjct: 139 IQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGT-TVS-ESAVTPAQSPVLRIII 196
Query: 67 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 126
+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK AL+G IY+
Sbjct: 197 DNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYN 256
Query: 127 GGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 168
C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 257 A-CCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 297
Score = 91 (37.1 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 4 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 34
CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 259 CTLRIDFSKLVNLNVKYNNDKSRDYTRPDLP 289
Score = 79 (32.9 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 32/113 (28%), Positives = 54/113 (47%)
Query: 33 LPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 92
+P A +A A+ VG+ G + VLL S N + VT L +F +G VQ++
Sbjct: 328 IPNAAAAAAAAAAGRVGMPGVSAGGNT-VLLVSNLNEEM-VTPQSLFTLFGVYGDVQRVK 385
Query: 93 -MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 144
+++K ALIQ D + +A L G +Y G + ++ S+H + +
Sbjct: 386 ILYNKKDS--ALIQMADGNQSQLAMNHLNGQKMY-GKI--IRVTLSKHQTVQL 433
>UNIPROTKB|F1PXP9 [details] [associations]
symbol:PTBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 OMA:PPSVTMD
EMBL:AAEX03008069 EMBL:AAEX03008070 Ensembl:ENSCAFT00000004839
Uniprot:F1PXP9
Length = 521
Score = 263 (97.6 bits), Expect = 4.9e-22, P = 4.9e-22
Identities = 75/186 (40%), Positives = 99/186 (53%)
Query: 36 APSAIDASGQLSV-GL---DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI 91
A SA+ SG L++ G +G L +S VL IEN+ Y VTL+VLH +FS FG V KI
Sbjct: 122 AVSAVQ-SGSLALPGAPTNEGTILPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKI 180
Query: 92 AMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRS 151
F KN QAL+QY D A AK AL+G IY+ C L I +S+ T L++K NND+S
Sbjct: 181 ITFTKNNQFQALLQYADPVNAHYAKMALDGQNIYNA-CCTLRIDFSKLTSLNVKYNNDKS 239
Query: 152 RDYTLPSTPMVNSQPSILGQQPVPMV----GATANQYNGAQ-FAXXXXXXXXXXXXTAAG 206
RD+T P + QPS+ + P+ G ++ Y GA FA A
Sbjct: 240 RDFTRLDLPTGDGQPSL--EPPMAAAFGAPGIISSPYAGAAGFAPAIGFHQATGISVPAV 297
Query: 207 WGAVPP 212
GA+ P
Sbjct: 298 PGALGP 303
Score = 81 (33.6 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 4 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 34
CTLRI +S T L+VK+ + +SRD+T LP
Sbjct: 218 CTLRIDFSKLTSLNVKYNNDKSRDFTRLDLP 248
Score = 80 (33.2 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 35/143 (24%), Positives = 63/143 (44%)
Query: 23 HRSRDYTNPYLPVA--PSAIDASGQLS-VGLDGKKLEPESNVLLASIENMQYAVTLDVLH 79
H++ + P +P A P I +S + + G P ++VLL + N +T L
Sbjct: 287 HQATGISVPAVPGALGPLTITSSAVTGRMAIPGAGGLPGNSVLLVTNLNPDL-ITPHGLF 345
Query: 80 MVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 138
++F +G V ++ MF+K AL+Q D A +A L G +Y G + +S +
Sbjct: 346 ILFGVYGDVHRVKIMFNKKEN--ALVQMADANQAQLAMNHLSGQRLY-GKVLRATLSKHQ 402
Query: 139 HTDLSIKVNNDRSRDYTLPSTPM 161
L + D+ ++P+
Sbjct: 403 AVQLPREGQEDQGLTKDFSNSPL 425
>MGI|MGI:1860489 [details] [associations]
symbol:Ptbp2 "polypyrimidine tract binding protein 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=IMP;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0033119 "negative
regulation of RNA splicing" evidence=ISO] [GO:2000177 "regulation
of neural precursor cell proliferation" evidence=IMP]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1860489 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0033119
GO:GO:0006376 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
GO:GO:2000177 KO:K14948 HOVERGEN:HBG069548 eggNOG:NOG263741
HOGENOM:HOG000231699 CTD:58155 OrthoDB:EOG473PSG ChiTaRS:PTBP2
EMBL:AF095718 EMBL:AK013734 EMBL:AK137348 EMBL:BC010255
EMBL:AY333752 EMBL:BK000527 IPI:IPI00136002 IPI:IPI00751759
RefSeq:NP_062423.1 UniGene:Mm.29966 ProteinModelPortal:Q91Z31
SMR:Q91Z31 IntAct:Q91Z31 STRING:Q91Z31 PhosphoSite:Q91Z31
PaxDb:Q91Z31 PRIDE:Q91Z31 Ensembl:ENSMUST00000029780 GeneID:56195
KEGG:mmu:56195 UCSC:uc008rdi.1 UCSC:uc008rdk.2 InParanoid:Q91Z31
OMA:QSQLAMS NextBio:312010 Bgee:Q91Z31 CleanEx:MM_PTBP2
Genevestigator:Q91Z31 GermOnline:ENSMUSG00000028134 Uniprot:Q91Z31
Length = 531
Score = 263 (97.6 bits), Expect = 5.2e-22, P = 5.2e-22
Identities = 66/160 (41%), Positives = 89/160 (55%)
Query: 18 VKFQSHRS--RDYT-NPYLPVAPSAIDASGQLSVGLDGKKLE-----P-ESNVLLASIEN 68
+++ +H+ D T N V A+ A + L G + P +S VL I+N
Sbjct: 128 IQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPAQSPVLRIIIDN 187
Query: 69 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 128
M Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK AL+G IY+
Sbjct: 188 MYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNA- 246
Query: 129 FCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 168
C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 247 CCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 286
Score = 91 (37.1 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 4 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 34
CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 248 CTLRIDFSKLVNLNVKYNNDKSRDYTRPDLP 278
Score = 79 (32.9 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 32/113 (28%), Positives = 54/113 (47%)
Query: 33 LPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 92
+P A +A A+ VG+ G + VLL S N + VT L +F +G VQ++
Sbjct: 312 IPNAAAAAAAAAAGRVGMPGVSAGGNT-VLLVSNLNEEM-VTPQSLFTLFGVYGDVQRVK 369
Query: 93 -MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 144
+++K ALIQ D + +A L G +Y G + ++ S+H + +
Sbjct: 370 ILYNKKDS--ALIQMADGNQSQLAMNHLNGQKMY-GKI--IRVTLSKHQTVQL 417
>RGD|1359267 [details] [associations]
symbol:Ptbp2 "polypyrimidine tract binding protein 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA;ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA;ISO] [GO:0006376
"mRNA splice site selection" evidence=IEA;ISO] [GO:0033119
"negative regulation of RNA splicing" evidence=IEA;ISO] [GO:2000177
"regulation of neural precursor cell proliferation"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1359267
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0033119 GO:GO:0006376 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 KO:K14948 HOVERGEN:HBG069548
eggNOG:NOG263741 HOGENOM:HOG000231699 CTD:58155 OrthoDB:EOG473PSG
EMBL:AJ010585 EMBL:BC082076 EMBL:AY333750 IPI:IPI00471764
IPI:IPI00758469 RefSeq:NP_001005555.1 UniGene:Rn.64916
ProteinModelPortal:Q66H20 SMR:Q66H20 STRING:Q66H20 PRIDE:Q66H20
Ensembl:ENSRNOT00000015036 GeneID:310820 KEGG:rno:310820
UCSC:RGD:1359267 InParanoid:Q66H20 NextBio:662705
Genevestigator:Q66H20 GermOnline:ENSRNOG00000010827 Uniprot:Q66H20
Length = 531
Score = 263 (97.6 bits), Expect = 5.2e-22, P = 5.2e-22
Identities = 66/160 (41%), Positives = 89/160 (55%)
Query: 18 VKFQSHRS--RDYT-NPYLPVAPSAIDASGQLSVGLDGKKLE-----P-ESNVLLASIEN 68
+++ +H+ D T N V A+ A + L G + P +S VL I+N
Sbjct: 128 IQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPAQSPVLRIIIDN 187
Query: 69 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 128
M Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK AL+G IY+
Sbjct: 188 MYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLALDGQNIYNA- 246
Query: 129 FCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 168
C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 247 CCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 286
Score = 91 (37.1 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 4 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 34
CTLRI +S +L+VK+ + +SRDYT P LP
Sbjct: 248 CTLRIDFSKLVNLNVKYNNDKSRDYTRPDLP 278
Score = 79 (32.9 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 32/113 (28%), Positives = 54/113 (47%)
Query: 33 LPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 92
+P A +A A+ VG+ G + VLL S N + VT L +F +G VQ++
Sbjct: 312 IPNAAAAAAAAAAGRVGMPGVSAGGNT-VLLVSNLNEEM-VTPQSLFTLFGVYGDVQRVK 369
Query: 93 -MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 144
+++K ALIQ D + +A L G +Y G + ++ S+H + +
Sbjct: 370 ILYNKKDS--ALIQMADGNQSQLAMNHLNGQKMY-GKI--IRVTLSKHQTVQL 417
>ZFIN|ZDB-GENE-050320-141 [details] [associations]
symbol:ptbp2a "polypyrimidine tract binding protein
2a" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050320-141
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
EMBL:CU896585 IPI:IPI00996240 Ensembl:ENSDART00000123275
Bgee:F1QG05 Uniprot:F1QG05
Length = 512
Score = 257 (95.5 bits), Expect = 2.1e-21, P = 2.1e-21
Identities = 56/110 (50%), Positives = 69/110 (62%)
Query: 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 118
S VL I+NM Y VTLDVL +FS FG V KI F KN QAL+QY D A AK A
Sbjct: 164 SPVLRIIIDNMFYPVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQYNDPACAQQAKVA 223
Query: 119 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 168
L+G IY+ C L I YS+ +L++K NND+SRDYT P P + QP++
Sbjct: 224 LDGQNIYNA-CCTLRIDYSKLVNLNVKYNNDKSRDYTRPELPAGDGQPAL 272
Score = 104 (41.7 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 22/46 (47%), Positives = 29/46 (63%)
Query: 4 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--AIDASGQLS 47
CTLRI YS +L+VK+ + +SRDYT P LP A+D + LS
Sbjct: 234 CTLRIDYSKLVNLNVKYNNDKSRDYTRPELPAGDGQPALDVAAALS 279
Score = 81 (33.6 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 33/113 (29%), Positives = 53/113 (46%)
Query: 34 PVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA- 92
P++ +A A+ V L G VLL S N + VT L +F +G VQ++
Sbjct: 295 PLSAAAAAAAAAGRVALSGHS--SSGGVLLVSNLNEEM-VTPHSLFTLFGVYGDVQRVKI 351
Query: 93 MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL-HISYSRHTDLSI 144
+F+K ALIQ D+ A +A L G + F K+ ++ S+H + +
Sbjct: 352 LFNKKDS--ALIQMADMNQAQLAMSHLNGQKM----FSKIIRVTMSKHQTVQL 398
>ZFIN|ZDB-GENE-060810-49 [details] [associations]
symbol:ptbp2b "polypyrimidine tract binding protein
2b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060810-49 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 KO:K14948
HOVERGEN:HBG069548 eggNOG:NOG263741 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ EMBL:BX005269 IPI:IPI00855280
RefSeq:NP_001093477.1 UniGene:Dr.75530 SMR:A5PM68
Ensembl:ENSDART00000038648 GeneID:562434 KEGG:dre:562434 CTD:562434
OMA:YTAVTPQ NextBio:20884409 Uniprot:A5PM68
Length = 538
Score = 257 (95.5 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 61/135 (45%), Positives = 78/135 (57%)
Query: 36 APSAIDASGQLSVGLDGKK-LEPE-SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAM 93
A SA+ G S + K L P S VL I+NM Y VTLDVL +FS FG V KI
Sbjct: 147 AVSAVQEGGSPSSDMASKSVLTPAPSPVLRIIIDNMFYPVTLDVLQQIFSKFGTVMKIIT 206
Query: 94 FDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRD 153
F KN QAL+Q+ D A AK +L+G IY+ C L I +S+ +L++K NND+SRD
Sbjct: 207 FTKNNQFQALLQFSDPVNAQQAKLSLDGQNIYNS-CCTLRIDFSKLVNLNVKYNNDKSRD 265
Query: 154 YTLPSTPMVNSQPSI 168
YT P P + QP +
Sbjct: 266 YTRPELPAGDGQPPV 280
>WB|WBGene00004207 [details] [associations]
symbol:ptb-1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 EMBL:Z36948 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 eggNOG:NOG263741 HOGENOM:HOG000231699
OMA:IKMHNHK PIR:A88299 PIR:T20381 RefSeq:NP_741041.1 HSSP:P26599
ProteinModelPortal:Q18999 SMR:Q18999 DIP:DIP-24857N IntAct:Q18999
MINT:MINT-1089938 STRING:Q18999 PaxDb:Q18999 PRIDE:Q18999
EnsemblMetazoa:D2089.4a GeneID:174647 KEGG:cel:CELE_D2089.4
UCSC:D2089.4a CTD:174647 WormBase:D2089.4a InParanoid:Q18999
NextBio:884900 ArrayExpress:Q18999 Uniprot:Q18999
Length = 615
Score = 250 (93.1 bits), Expect = 2.0e-20, P = 2.0e-20
Identities = 67/185 (36%), Positives = 102/185 (55%)
Query: 5 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLA 64
TL YS H +L KF +++ ++ + A+G +S G + +P S VL
Sbjct: 187 TLFAQYSTHREL--KFDKNKA---------ISDTESVANGSVSNFEVGTQQQPNS-VLRT 234
Query: 65 SIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCI 124
IENM + V+LDVL+ +F+ +G V +I F+KN QAL+Q + +A +AK+ LE +
Sbjct: 235 IIENMMFPVSLDVLYQLFTRYGKVLRIITFNKNNTFQALVQMSEANSAQLAKQGLENQNV 294
Query: 125 YDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPM--VNSQPSILGQQPVPMVGATAN 182
Y+G C L I YS+ + L++K NND+SRDYT P+ P + + +I P AN
Sbjct: 295 YNG-CCTLRIDYSKLSTLNVKYNNDKSRDYTNPNLPAGEMTLEQTIAMSIPGLQNLIPAN 353
Query: 183 QYNGA 187
YN A
Sbjct: 354 PYNFA 358
Score = 111 (44.1 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 2 GPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSV-GL 50
G CTLRI YS + L+VK+ + +SRDYTNP LP ++ + +S+ GL
Sbjct: 297 GCCTLRIDYSKLSTLNVKYNNDKSRDYTNPNLPAGEMTLEQTIAMSIPGL 346
Score = 76 (31.8 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 23/85 (27%), Positives = 47/85 (55%)
Query: 61 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEAL 119
+L++++ M+ VT D L +F +G V ++ +++K ALIQY + Q A +A L
Sbjct: 423 ILVSNLHEMK--VTTDALFTLFGVYGDVMRVKILYNKKDN--ALIQYSEPQQAQLALTHL 478
Query: 120 EGHCIYDGGFCKLHISYSRHTDLSI 144
+ +D + ++ S+HT++ +
Sbjct: 479 DKVKWHDR---LIRVAPSKHTNVQM 500
Score = 64 (27.6 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 20/74 (27%), Positives = 39/74 (52%)
Query: 66 IENMQYAVTLDVLHMVFSAFG-PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCI 124
+ N+ +V+ + L +F+ G V+ F K+ + AL Q D++TA+ A A+ H +
Sbjct: 542 LSNIPTSVSEEKLKEMFAEAGFAVKAFKFFPKDHKM-ALCQLEDIETAIDALIAMHNHKL 600
Query: 125 YDGGFCKLHISYSR 138
+ L +S+S+
Sbjct: 601 AENAH--LRVSFSK 612
>RGD|727953 [details] [associations]
symbol:Smptb "polypyrimidine tract-binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:727953
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000380 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
HOVERGEN:HBG069548 eggNOG:NOG263741 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ HSSP:P26599 EMBL:CH474078 EMBL:AY223520
IPI:IPI00331913 RefSeq:NP_877970.1 UniGene:Rn.97598 SMR:Q80XZ1
Ensembl:ENSRNOT00000014611 GeneID:302879 KEGG:rno:302879
UCSC:RGD:727953 CTD:302879 NextBio:650282 Genevestigator:Q80XZ1
Uniprot:Q80XZ1
Length = 588
Score = 247 (92.0 bits), Expect = 3.7e-20, P = 3.7e-20
Identities = 56/110 (50%), Positives = 68/110 (61%)
Query: 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 117
+S VL +EN Y VTL+VLH +FS FG V KI KN QAL+QY V +A AK
Sbjct: 186 QSPVLRILVENYFYRVTLEVLHQIFSRFGTVLKIITCTKNNRFQALLQYAHVMSAERAKL 245
Query: 118 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPS 167
L+G IYD C L IS+S T+L +K NND+SRDY P P +SQPS
Sbjct: 246 FLDGQNIYDA-CCTLRISFSGLTNLMVKYNNDKSRDYMRPDLPSDDSQPS 294
>FB|FBgn0011224 [details] [associations]
symbol:heph "hephaestus" species:7227 "Drosophila
melanogaster" [GO:0007286 "spermatid development" evidence=IMP]
[GO:0008187 "poly-pyrimidine tract binding" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0007219 "Notch
signaling pathway" evidence=IMP] [GO:0008586 "imaginal disc-derived
wing vein morphogenesis" evidence=IMP] [GO:0008587 "imaginal
disc-derived wing margin morphogenesis" evidence=IMP] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0007319 "negative regulation of oskar mRNA
translation" evidence=IMP] [GO:0008103 "oocyte microtubule
cytoskeleton polarization" evidence=IMP] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0000900 "translation repressor activity,
nucleic acid binding" evidence=IMP] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:2001020 "regulation of response to DNA damage stimulus"
evidence=IGI] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0007291 "sperm individualization" evidence=IMP]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005634
GO:GO:0005737 GO:GO:0008103 GO:GO:0000166 GO:GO:0008586
Gene3D:3.30.70.330 GO:GO:0007291 GO:GO:0003730 GO:GO:0030529
GO:GO:0000398 GO:GO:0000900 GO:GO:0008587 GO:GO:0007319
GO:GO:0008187 CTD:9843 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 KO:K14948 UniGene:Dm.19417
GeneID:48571 KEGG:dme:Dmel_CG31000 FlyBase:FBgn0011224 ChiTaRS:HEPH
GenomeRNAi:48571 NextBio:839481 HSSP:P26599 EMBL:AY052367
EMBL:BT030984 RefSeq:NP_001163787.1 RefSeq:NP_001163790.1
RefSeq:NP_788780.1 SMR:Q95UI6 STRING:Q95UI6
EnsemblMetazoa:FBtr0085881 EnsemblMetazoa:FBtr0300263
EnsemblMetazoa:FBtr0300266 UCSC:CG31000-RH InParanoid:Q95UI6
Uniprot:Q95UI6
Length = 789
Score = 249 (92.7 bits), Expect = 4.1e-20, P = 4.1e-20
Identities = 60/145 (41%), Positives = 81/145 (55%)
Query: 38 SAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN 97
SA++A G + G P + VL +E++ Y V+LD+LH +F +G V KI F KN
Sbjct: 388 SAVNAGGNTNAA-GG----PNT-VLRVIVESLMYPVSLDILHQIFQRYGKVLKIVTFTKN 441
Query: 98 GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP 157
QALIQYPD +A AK L+G IY+G C L I S+ T L++K NND+SRD+T P
Sbjct: 442 NSFQALIQYPDANSAQHAKSLLDGQNIYNG-CCTLRIDNSKLTALNVKYNNDKSRDFTNP 500
Query: 158 STPMVNSQPSILGQQPVPMVGATAN 182
+ P P G +P G N
Sbjct: 501 ALP-----PGEPGVDIMPTAGGLMN 520
>UNIPROTKB|E1C5J2 [details] [associations]
symbol:E1C5J2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 EMBL:AADN02057711 EMBL:AADN02057712
EMBL:AADN02057713 IPI:IPI00822931 Ensembl:ENSGALT00000037624
ArrayExpress:E1C5J2 Uniprot:E1C5J2
Length = 288
Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
Identities = 67/191 (35%), Positives = 101/191 (52%)
Query: 4 CTLRITYSAHTDLSVKFQSHRS-RDYTNPYLPVAPSAIDASGQLSVGLDG--------KK 54
C+ I + + + V++ +HR + + P A +A+ + G G
Sbjct: 97 CSTAIPHIHNQPVYVQYSNHRELKTDSLPSQASAQAALQVVNTVQCGNVGVTSTFAAESG 156
Query: 55 LEP-ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAV 113
L P S+VL IEN+ Y V+L+VL+ +FS FG V KI F +N QALIQY + A
Sbjct: 157 LPPGHSSVLRIIIENLFYPVSLEVLYQIFSKFGFVLKIVTFTRNNQFQALIQYAEPVNAY 216
Query: 114 VAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQ----PSIL 169
AK AL G IY+ C LHI +S+ T L +K NN++SRD+T P + Q P+I+
Sbjct: 217 YAKMALNGRNIYNA-CCTLHIDFSKLTSLKVKYNNEKSRDFTRFDLPAADGQLPLDPAII 275
Query: 170 ---GQQPVPMV 177
G++P+ +V
Sbjct: 276 AAFGKEPLFLV 286
>UNIPROTKB|F1ND44 [details] [associations]
symbol:F1ND44 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0033119 "negative regulation of RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0033119
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 EMBL:AADN02057711
EMBL:AADN02057712 EMBL:AADN02057713 IPI:IPI00604250
Ensembl:ENSGALT00000025267 OMA:FLEMASI ArrayExpress:F1ND44
Uniprot:F1ND44
Length = 364
Score = 233 (87.1 bits), Expect = 2.2e-19, P = 2.2e-19
Identities = 69/195 (35%), Positives = 100/195 (51%)
Query: 4 CTLRITYSAHTDLSVKFQSHRS-RDYTNPYLPVAPSAIDASGQLSVGLDG--------KK 54
C+ I + + + V++ +HR + + P A +A+ + G G
Sbjct: 113 CSTAIPHIHNQPVYVQYSNHRELKTDSLPSQASAQAALQVVNTVQCGNVGVTSTFAAESG 172
Query: 55 LEP-ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAV 113
L P S+VL IEN+ Y V+L+VL+ +FS FG V KI F +N QALIQY + A
Sbjct: 173 LPPGHSSVLRIIIENLFYPVSLEVLYQIFSKFGFVLKIVTFTRNNQFQALIQYAEPVNAY 232
Query: 114 VAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQ----PSIL 169
AK AL G IY+ C LHI +S+ T L +K NN++SRD+T P + Q P+I+
Sbjct: 233 YAKMALNGRNIYNA-CCTLHIDFSKLTSLKVKYNNEKSRDFTRFDLPAADGQLPLDPAII 291
Query: 170 ---GQQPV---PMVG 178
G Q + P VG
Sbjct: 292 AAFGSQGIIFQPYVG 306
>ZFIN|ZDB-GENE-040426-2707 [details] [associations]
symbol:hnrnpl2 "heterogeneous nuclear
ribonucleoprotein L2" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2707 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG326285
HOVERGEN:HBG105786 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
HOGENOM:HOG000293298 EMBL:BX088654 EMBL:BC154328 IPI:IPI00617335
UniGene:Dr.32199 SMR:A8KC22 STRING:A8KC22
Ensembl:ENSDART00000142334 Uniprot:A8KC22
Length = 522
Score = 218 (81.8 bits), Expect = 4.0e-17, P = 4.0e-17
Identities = 57/159 (35%), Positives = 90/159 (56%)
Query: 32 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 89
Y+ P+ ++ S + G + S NVLL +I N Y +T DVL+ + + GPVQ
Sbjct: 103 YIAGHPAFVNYSTSQKISRPGDPDDARSVNNVLLLTIMNPIYPITSDVLYTICNNCGPVQ 162
Query: 90 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 149
+I +F KNG +QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 163 RIVIFRKNG-VQAMVEFDSVQSAQRAKASLNGADIYSG-CCTLKIEYAKPTRLNVFKNDQ 220
Query: 150 RSRDYTLPS--TPMVNSQPSILGQQPVPMVGATANQYNG 186
+ DYT PS T +N+ P+ +QP ++G +Y G
Sbjct: 221 DTWDYTNPSLGTQDMNANPNKRQRQPA-LLGDHPPEYGG 258
>DICTYBASE|DDB_G0275365 [details] [associations]
symbol:DDB_G0275365 "Heterogeneous nuclear
ribonucleoprotein L" species:44689 "Dictyostelium discoideum"
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275365 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AAFI02000013 eggNOG:NOG326285
TIGRFAMs:TIGR01649 RefSeq:XP_643683.1 ProteinModelPortal:Q553T2
EnsemblProtists:DDB0202577 GeneID:8619950 KEGG:ddi:DDB_G0275365
InParanoid:Q553T2 OMA:SITDSHN Uniprot:Q553T2
Length = 695
Score = 215 (80.7 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 58/153 (37%), Positives = 87/153 (56%)
Query: 22 SHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEP-ESNVLLASIENM-QYAVTLDVLH 79
SHRS ++ Y + P A S Q + + P VLL++IEN ++T+D L+
Sbjct: 119 SHRSSPSSSSYNGL-PQA--GSRQSNFSPNTNNSAPIAGTVLLSTIENPGSNSITIDHLY 175
Query: 80 MVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 139
VFS+ G V +I MF+KN LQALI++ V++A+ AK+ L H ++ GG C L + S+
Sbjct: 176 HVFSSCGEVLRIVMFNKNN-LQALIEFSTVESALHAKKTLSNHSLFHGGQCTLKLEVSKT 234
Query: 140 TDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQ 172
L+I N DR++D++ S P VN S QQ
Sbjct: 235 DRLNITQNTDRAKDFS-KSLPTVNQSSSSSSQQ 266
>MGI|MGI:104816 [details] [associations]
symbol:Hnrnpl "heterogeneous nuclear ribonucleoprotein L"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0044212 "transcription regulatory region
DNA binding" evidence=ISO] [GO:0045120 "pronucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104816 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0044212 GO:GO:0030529 GO:GO:0045120
eggNOG:NOG326285 HOVERGEN:HBG105786 KO:K13159 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 HOGENOM:HOG000293298 CTD:3191
OrthoDB:EOG4RFKSD ChiTaRS:HNRNPL EMBL:BC027206 EMBL:BC030461
EMBL:BC099683 EMBL:AB009392 IPI:IPI00620362 RefSeq:NP_796275.3
UniGene:Mm.9043 PDB:3S01 PDB:3TYT PDBsum:3S01 PDBsum:3TYT
ProteinModelPortal:Q8R081 SMR:Q8R081 IntAct:Q8R081 STRING:Q8R081
PhosphoSite:Q8R081 REPRODUCTION-2DPAGE:Q8R081 PaxDb:Q8R081
PRIDE:Q8R081 Ensembl:ENSMUST00000038572 Ensembl:ENSMUST00000174548
GeneID:15388 KEGG:mmu:15388 UCSC:uc009fzz.2 NextBio:288066
Bgee:Q8R081 CleanEx:MM_HNRNPL Genevestigator:Q8R081
GermOnline:ENSMUSG00000015165 Uniprot:Q8R081
Length = 586
Score = 206 (77.6 bits), Expect = 1.0e-15, P = 1.0e-15
Identities = 55/160 (34%), Positives = 89/160 (55%)
Query: 32 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 89
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 160 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 219
Query: 90 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 149
+I +F KNG +QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 220 RIVIFRKNG-VQAMVEFDSVQSAQRAKASLNGADIYSG-CCTLKIEYAKPTRLNVFKNDQ 277
Query: 150 RSRDYTLPSTPMVN---SQPSILGQQPVPMVGATANQYNG 186
+ DYT P+ S P+ +QP P++G +Y G
Sbjct: 278 DTWDYTNPNLSGQGDPGSNPNKRQRQP-PLLGDHPAEYGG 316
>UNIPROTKB|F2Z3R2 [details] [associations]
symbol:Hnrnpl "Protein Hnrnpl" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:71059 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13159
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 CTD:3191
UniGene:Rn.33873 GeneID:80846 KEGG:rno:80846 NextBio:614884
IPI:IPI00364061 RefSeq:NP_116008.2 ProteinModelPortal:F2Z3R2
SMR:F2Z3R2 PRIDE:F2Z3R2 Ensembl:ENSRNOT00000027494 Uniprot:F2Z3R2
Length = 586
Score = 206 (77.6 bits), Expect = 1.0e-15, P = 1.0e-15
Identities = 55/160 (34%), Positives = 89/160 (55%)
Query: 32 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 89
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 160 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 219
Query: 90 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 149
+I +F KNG +QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 220 RIVIFRKNG-VQAMVEFDSVQSAQRAKASLNGADIYSG-CCTLKIEYAKPTRLNVFKNDQ 277
Query: 150 RSRDYTLPSTPMVN---SQPSILGQQPVPMVGATANQYNG 186
+ DYT P+ S P+ +QP P++G +Y G
Sbjct: 278 DTWDYTNPNLSGQGDPGSNPNKRQRQP-PLLGDHPAEYGG 316
>UNIPROTKB|E1BIB4 [details] [associations]
symbol:HNRNPL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045120 "pronucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0044212 GO:GO:0045120 KO:K13159 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 CTD:3191 OMA:RPTSVKV EMBL:DAAA02047038
IPI:IPI00697891 RefSeq:NP_001178959.1 UniGene:Bt.21801 PRIDE:E1BIB4
Ensembl:ENSBTAT00000032051 GeneID:504520 KEGG:bta:504520
NextBio:20866705 Uniprot:E1BIB4
Length = 588
Score = 206 (77.6 bits), Expect = 1.0e-15, P = 1.0e-15
Identities = 55/160 (34%), Positives = 89/160 (55%)
Query: 32 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 89
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 162 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 221
Query: 90 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 149
+I +F KNG +QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 222 RIVIFRKNG-VQAMVEFDSVQSAQRAKASLNGADIYSG-CCTLKIEYAKPTRLNVFKNDQ 279
Query: 150 RSRDYTLPSTPMVN---SQPSILGQQPVPMVGATANQYNG 186
+ DYT P+ S P+ +QP P++G +Y G
Sbjct: 280 DTWDYTNPNLSGQGDPGSNPNKRQRQP-PLLGDHPAEYGG 318
>UNIPROTKB|E2R944 [details] [associations]
symbol:HNRNPL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045120 "pronucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0044212
GO:GO:0045120 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
OMA:RPTSVKV EMBL:AAEX03000969 Ensembl:ENSCAFT00000009103
Uniprot:E2R944
Length = 588
Score = 206 (77.6 bits), Expect = 1.0e-15, P = 1.0e-15
Identities = 55/160 (34%), Positives = 89/160 (55%)
Query: 32 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 89
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 162 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 221
Query: 90 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 149
+I +F KNG +QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 222 RIVIFRKNG-VQAMVEFDSVQSAQRAKASLNGADIYSG-CCTLKIEYAKPTRLNVFKNDQ 279
Query: 150 RSRDYTLPSTPMVN---SQPSILGQQPVPMVGATANQYNG 186
+ DYT P+ S P+ +QP P++G +Y G
Sbjct: 280 DTWDYTNPNLSGQGDPGSNPNKRQRQP-PLLGDHPAEYGG 318
>UNIPROTKB|P14866 [details] [associations]
symbol:HNRNPL "Heterogeneous nuclear ribonucleoprotein L"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IDA] [GO:0030529 "ribonucleoprotein complex"
evidence=IDA] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675
Gene3D:3.30.70.330 EMBL:CH471126 GO:GO:0003723 GO:GO:0044212
GO:GO:0030529 GO:GO:0000398 GO:GO:0045120 eggNOG:NOG326285
HOVERGEN:HBG105786 KO:K13159 TIGRFAMs:TIGR01649
HOGENOM:HOG000293298 EMBL:AB044547 EMBL:AK292115 EMBL:AC008982
EMBL:X16135 IPI:IPI00027834 PIR:A33616 RefSeq:NP_001005335.1
RefSeq:NP_001524.2 UniGene:Hs.644906 PDB:3R27 PDB:3TO8 PDBsum:3R27
PDBsum:3TO8 ProteinModelPortal:P14866 SMR:P14866 IntAct:P14866
MINT:MINT-1422378 STRING:P14866 PhosphoSite:P14866 DMDM:215274006
REPRODUCTION-2DPAGE:IPI00027834 SWISS-2DPAGE:P14866 PaxDb:P14866
PRIDE:P14866 DNASU:3191 Ensembl:ENST00000221419
Ensembl:ENST00000388749 Ensembl:ENST00000388750 GeneID:3191
KEGG:hsa:3191 UCSC:uc021uuh.1 CTD:3191 GeneCards:GC19M039327
H-InvDB:HIX0174642 HGNC:HGNC:5045 HPA:CAB016326 MIM:164021
MIM:603083 neXtProt:NX_P14866 PharmGKB:PA162391389
InParanoid:P14866 OMA:RPTSVKV OrthoDB:EOG4RFKSD ChiTaRS:HNRNPL
GenomeRNAi:3191 NextBio:12694 ArrayExpress:P14866 Bgee:P14866
CleanEx:HS_HNRNPL Genevestigator:P14866 GermOnline:ENSG00000104824
Uniprot:P14866
Length = 589
Score = 206 (77.6 bits), Expect = 1.0e-15, P = 1.0e-15
Identities = 55/160 (34%), Positives = 89/160 (55%)
Query: 32 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 89
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 163 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 222
Query: 90 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 149
+I +F KNG +QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 223 RIVIFRKNG-VQAMVEFDSVQSAQRAKASLNGADIYSG-CCTLKIEYAKPTRLNVFKNDQ 280
Query: 150 RSRDYTLPSTPMVN---SQPSILGQQPVPMVGATANQYNG 186
+ DYT P+ S P+ +QP P++G +Y G
Sbjct: 281 DTWDYTNPNLSGQGDPGSNPNKRQRQP-PLLGDHPAEYGG 319
>DICTYBASE|DDB_G0278105 [details] [associations]
symbol:DDB_G0278105 "heterogeneous nuclear
ribonucleoprotein L-like protein" species:44689 "Dictyostelium
discoideum" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0278105
GO:GO:0005634 GO:GO:0000166 EMBL:AAFI02000023 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG326285 KO:K13159
TIGRFAMs:TIGR01649 RefSeq:XP_642125.1 ProteinModelPortal:Q54YS7
EnsemblProtists:DDB0233648 GeneID:8621334 KEGG:ddi:DDB_G0278105
InParanoid:Q54YS7 OMA:VIRIVIF ProtClustDB:CLSZ2846835
Uniprot:Q54YS7
Length = 530
Score = 203 (76.5 bits), Expect = 1.7e-15, P = 1.7e-15
Identities = 40/106 (37%), Positives = 64/106 (60%)
Query: 60 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL 119
N++L +I N Y +T + +H + S +G V +I +F K GLQ +++ +A AKE+L
Sbjct: 135 NIILCTILNPIYPITTNTIHNIMSPYGRVIRIVIFQKKSGLQTFVEFDSPYSAWAAKESL 194
Query: 120 EGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQ 165
G IY+GG CKL I ++R + L++K N+D++ DYT M Q
Sbjct: 195 NGQDIYNGG-CKLQIEFARVSKLNVKQNDDKTADYTAEFYQMQQQQ 239
>UNIPROTKB|F1LZ79 [details] [associations]
symbol:F1LZ79 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
IPI:IPI00561021 Ensembl:ENSRNOT00000006719 ArrayExpress:F1LZ79
Uniprot:F1LZ79
Length = 485
Score = 201 (75.8 bits), Expect = 2.4e-15, P = 2.4e-15
Identities = 53/159 (33%), Positives = 92/159 (57%)
Query: 32 YLPVAPSAID--ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ 89
Y+ P+ I+ S ++S D + + ++VLL +I N Y++T DVL+ + + GP+Q
Sbjct: 71 YIAGHPAFINYCTSQKISRPGDSEDSQSINSVLLFTILNPIYSITTDVLYTICNPCGPIQ 130
Query: 90 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 149
+ +F +NG +QA++++ VQ+A AK +L+G IY G C L I Y++ T L++ NN
Sbjct: 131 RTVIFRENG-VQAMVEFDSVQSAQSAKASLDGADIYSG-CCTLTIEYAKPTRLNVSKNNQ 188
Query: 150 RSRDYTLPSTPMVN--SQPSILGQQPVPMVGATANQYNG 186
+ DYT P + + S + +QP P++G +Y G
Sbjct: 189 DTWDYTNPLSGQGDPGSNHNECQRQP-PLLGDHPAEYGG 226
>UNIPROTKB|F1M040 [details] [associations]
symbol:F1M040 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 IPI:IPI00952207
Ensembl:ENSRNOT00000006710 ArrayExpress:F1M040 Uniprot:F1M040
Length = 488
Score = 201 (75.8 bits), Expect = 2.4e-15, P = 2.4e-15
Identities = 53/159 (33%), Positives = 92/159 (57%)
Query: 32 YLPVAPSAID--ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ 89
Y+ P+ I+ S ++S D + + ++VLL +I N Y++T DVL+ + + GP+Q
Sbjct: 71 YIAGHPAFINYCTSQKISRPGDSEDSQSINSVLLFTILNPIYSITTDVLYTICNPCGPIQ 130
Query: 90 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 149
+ +F +NG +QA++++ VQ+A AK +L+G IY G C L I Y++ T L++ NN
Sbjct: 131 RTVIFRENG-VQAMVEFDSVQSAQSAKASLDGADIYSG-CCTLTIEYAKPTRLNVSKNNQ 188
Query: 150 RSRDYTLPSTPMVN--SQPSILGQQPVPMVGATANQYNG 186
+ DYT P + + S + +QP P++G +Y G
Sbjct: 189 DTWDYTNPLSGQGDPGSNHNECQRQP-PLLGDHPAEYGG 226
>ZFIN|ZDB-GENE-040426-710 [details] [associations]
symbol:hnrpl "heterogeneous nuclear
ribonucleoprotein L" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-710 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BX547938 HOVERGEN:HBG105786
KO:K13159 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
HOGENOM:HOG000293298 OMA:RPTSVKV OrthoDB:EOG4RFKSD EMBL:BC045336
IPI:IPI00502192 RefSeq:NP_957393.1 UniGene:Dr.76170 SMR:Q7ZW09
STRING:Q7ZW09 Ensembl:ENSDART00000051184 GeneID:394074
KEGG:dre:394074 CTD:394074 InParanoid:Q7ZW09 NextBio:20815031
Uniprot:Q7ZW09
Length = 536
Score = 201 (75.8 bits), Expect = 2.9e-15, P = 2.9e-15
Identities = 50/129 (38%), Positives = 76/129 (58%)
Query: 32 YLPVAPSAID--ASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ 89
Y+ PS I+ S ++S D +NVLL +I N Y +T DVL+ + + GPVQ
Sbjct: 102 YIAGRPSYINYSTSQKISRPTDSDDTRSVNNVLLLTIMNPIYPITSDVLYTICNNCGPVQ 161
Query: 90 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 149
+I +F KNG +QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 162 RIVIFRKNG-VQAMVEFDSVQSAQRAKASLNGADIYSG-CCTLKIEYAKPTRLNVFKNDQ 219
Query: 150 RSRDYTLPS 158
+ DYT P+
Sbjct: 220 DTWDYTNPN 228
>UNIPROTKB|H7BXH8 [details] [associations]
symbol:HNRPLL "Heterogeneous nuclear ribonucleoprotein
L-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AC011247 HGNC:HGNC:25127 TIGRFAMs:TIGR01649
ProteinModelPortal:H7BXH8 PRIDE:H7BXH8 Ensembl:ENST00000272249
Uniprot:H7BXH8
Length = 217
Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
Identities = 44/99 (44%), Positives = 63/99 (63%)
Query: 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 118
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +NG +QA++++ V A AK A
Sbjct: 101 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNG-IQAMVEFESVLCAQKAKAA 159
Query: 119 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP 157
L G IY G C L I Y+R T L++ N++ S DYT P
Sbjct: 160 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYTKP 197
>UNIPROTKB|F1LPP9 [details] [associations]
symbol:Hnrnpl "Protein Hnrnpl" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:71059 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13159
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 CTD:3191
IPI:IPI00765134 RefSeq:NP_001128232.1 UniGene:Rn.33873 PRIDE:F1LPP9
Ensembl:ENSRNOT00000057034 GeneID:80846 KEGG:rno:80846
NextBio:614884 ArrayExpress:F1LPP9 Uniprot:F1LPP9
Length = 623
Score = 200 (75.5 bits), Expect = 5.0e-15, P = 5.0e-15
Identities = 54/158 (34%), Positives = 88/158 (55%)
Query: 32 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 89
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 160 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 219
Query: 90 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 149
+I +F KNG +QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 220 RIVIFRKNG-VQAMVEFDSVQSAQRAKASLNGADIYSG-CCTLKIEYAKPTRLNVFKNDQ 277
Query: 150 RSRDYTLPSTPMVN---SQPSILGQQPVPMVGATANQY 184
+ DYT P+ S P+ +QP P++G +Y
Sbjct: 278 DTWDYTNPNLSGQGDPGSNPNKRQRQP-PLLGDHPAEY 314
>UNIPROTKB|C9IYN3 [details] [associations]
symbol:HNRPLL "Heterogeneous nuclear ribonucleoprotein
L-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AC011247 IPI:IPI00554613 HGNC:HGNC:25127 TIGRFAMs:TIGR01649
ProteinModelPortal:C9IYN3 SMR:C9IYN3 STRING:C9IYN3
Ensembl:ENST00000358367 HOGENOM:HOG000168824 ArrayExpress:C9IYN3
Bgee:C9IYN3 Uniprot:C9IYN3
Length = 282
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 44/99 (44%), Positives = 62/99 (62%)
Query: 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 118
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +NG +QA++ + V A AK A
Sbjct: 166 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNG-IQAMLMFESVLCAQKAKAA 224
Query: 119 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP 157
L G IY G C L I Y+R T L++ N++ S DYT P
Sbjct: 225 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYTKP 262
>UNIPROTKB|F1P0T4 [details] [associations]
symbol:HNRPLL "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0033120
"positive regulation of RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0033120
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 OMA:QIRIPNG
EMBL:AADN02041246 EMBL:AADN02041247 EMBL:AADN02041248
IPI:IPI00579162 Ensembl:ENSGALT00000013852 Uniprot:F1P0T4
Length = 473
Score = 194 (73.4 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 45/99 (45%), Positives = 63/99 (63%)
Query: 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 118
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +NG +QA+++Y V A AK A
Sbjct: 97 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNG-IQAMVEYQSVFCAQKAKAA 155
Query: 119 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP 157
L G IY G C L I Y+R T L++ N++ S DYT P
Sbjct: 156 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYTKP 193
>UNIPROTKB|Q8WVV9 [details] [associations]
symbol:HNRPLL "Heterogeneous nuclear ribonucleoprotein
L-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0033120 "positive
regulation of RNA splicing" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0030529
GO:GO:0033120 EMBL:AY236963 EMBL:AF461722 EMBL:AF461712
EMBL:AF461713 EMBL:AF461715 EMBL:AF461717 EMBL:AF461719
EMBL:AF461721 EMBL:AF461720 EMBL:AF461718 EMBL:AF461716
EMBL:AF461714 EMBL:AK291462 EMBL:AC011247 EMBL:BC008217
EMBL:BC017480 EMBL:AL512692 IPI:IPI00103247 IPI:IPI00470410
IPI:IPI00479814 IPI:IPI00554613 RefSeq:NP_001136122.1
RefSeq:NP_612403.2 UniGene:Hs.445497 ProteinModelPortal:Q8WVV9
SMR:Q8WVV9 IntAct:Q8WVV9 MINT:MINT-1033123 STRING:Q8WVV9
PhosphoSite:Q8WVV9 DMDM:62286941 PaxDb:Q8WVV9 PRIDE:Q8WVV9
Ensembl:ENST00000409636 Ensembl:ENST00000410076 GeneID:92906
KEGG:hsa:92906 UCSC:uc021vgb.1 UCSC:uc021vgc.1 CTD:92906
GeneCards:GC02M038789 HGNC:HGNC:25127 HPA:HPA046084 MIM:611208
neXtProt:NX_Q8WVV9 PharmGKB:PA134987080 eggNOG:NOG326285
HOVERGEN:HBG105786 InParanoid:Q8WVV9 KO:K13159 OrthoDB:EOG49S662
GenomeRNAi:92906 NextBio:77908 ArrayExpress:Q8WVV9 Bgee:Q8WVV9
CleanEx:HS_HNRPLL Genevestigator:Q8WVV9 GermOnline:ENSG00000143889
TIGRFAMs:TIGR01649 Uniprot:Q8WVV9
Length = 542
Score = 191 (72.3 bits), Expect = 3.6e-14, P = 3.6e-14
Identities = 44/99 (44%), Positives = 63/99 (63%)
Query: 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 118
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +NG +QA++++ V A AK A
Sbjct: 166 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNG-IQAMVEFESVLCAQKAKAA 224
Query: 119 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP 157
L G IY G C L I Y+R T L++ N++ S DYT P
Sbjct: 225 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYTKP 262
>MGI|MGI:1919942 [details] [associations]
symbol:Hnrpll "heterogeneous nuclear ribonucleoprotein
L-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0033120 "positive
regulation of RNA splicing" evidence=ISO] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1919942 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0033120
CTD:92906 eggNOG:NOG326285 HOVERGEN:HBG105786 KO:K13159
OrthoDB:EOG49S662 TIGRFAMs:TIGR01649 EMBL:AK034860 EMBL:AK146879
EMBL:BC004763 EMBL:BC012849 EMBL:BC071184 IPI:IPI00121760
IPI:IPI00463538 IPI:IPI00555009 RefSeq:NP_659051.3 UniGene:Mm.64579
PDB:1WEX PDB:2E5I PDBsum:1WEX PDBsum:2E5I ProteinModelPortal:Q921F4
SMR:Q921F4 STRING:Q921F4 PhosphoSite:Q921F4 PaxDb:Q921F4
PRIDE:Q921F4 Ensembl:ENSMUST00000061331 GeneID:72692 KEGG:mmu:72692
UCSC:uc008dqk.1 GeneTree:ENSGT00550000074508 HOGENOM:HOG000293298
InParanoid:Q921F4 OMA:QIRIPNG EvolutionaryTrace:Q921F4
NextBio:336749 Bgee:Q921F4 CleanEx:MM_HNRPLL Genevestigator:Q921F4
GermOnline:ENSMUSG00000024095 Uniprot:Q921F4
Length = 591
Score = 191 (72.3 bits), Expect = 4.2e-14, P = 4.2e-14
Identities = 44/99 (44%), Positives = 63/99 (63%)
Query: 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 118
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +NG +QA++++ V A AK A
Sbjct: 215 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNG-IQAMVEFESVLCAQKAKAA 273
Query: 119 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP 157
L G IY G C L I Y+R T L++ N++ S DYT P
Sbjct: 274 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYTKP 311
>RGD|1305861 [details] [associations]
symbol:Hnrpll "heterogeneous nuclear ribonucleoprotein L-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0033120 "positive regulation of RNA splicing"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:1305861
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0033120 CTD:92906 KO:K13159
OrthoDB:EOG49S662 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
IPI:IPI00360055 RefSeq:XP_001063027.2 RefSeq:XP_233805.5
PRIDE:D4A3E1 Ensembl:ENSRNOT00000009175 GeneID:313842
KEGG:rno:313842 UCSC:RGD:1305861 NextBio:666896 Uniprot:D4A3E1
Length = 591
Score = 191 (72.3 bits), Expect = 4.2e-14, P = 4.2e-14
Identities = 44/99 (44%), Positives = 63/99 (63%)
Query: 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 118
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +NG +QA++++ V A AK A
Sbjct: 215 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNG-IQAMVEFESVLCAQKAKAA 273
Query: 119 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP 157
L G IY G C L I Y+R T L++ N++ S DYT P
Sbjct: 274 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYTKP 311
>UNIPROTKB|F1LY02 [details] [associations]
symbol:F1LY02 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074508
IPI:IPI00778797 Ensembl:ENSRNOT00000036047 Uniprot:F1LY02
Length = 494
Score = 189 (71.6 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 61/181 (33%), Positives = 91/181 (50%)
Query: 8 ITYSAHTDLSVKFQSHRSRDYTNPYLPV--APSAIDASGQLSVGLDGKKLEPESNVLLAS 65
I +S H +L +++ T PV S + + ++ G + +S VL
Sbjct: 122 IQFSDHKELKTDNSPNQAHAQT-ALQPVNTVQSGVALATSVAAVAAGMAMAGQSPVLRII 180
Query: 66 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 125
+ N+ Y VTLDVLH +FS FG V KI F KN AL+Q D +A AK + +G I
Sbjct: 181 VGNLFYPVTLDVLHKIFSKFGRVLKIITFTKN----ALLQSADPVSAQHAKLS-DGQNIC 235
Query: 126 DGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYN 185
+ C L I++S+ T L+++ NND+SR YT+P +S PS L Q G + +
Sbjct: 236 NAR-CMLCINFSKLTRLNVQYNNDKSRGYTIPDVG--DSHPS-LDQTMAAAFGLSVPNVH 291
Query: 186 G 186
G
Sbjct: 292 G 292
>UNIPROTKB|I3L8B8 [details] [associations]
symbol:HNRPLL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
Ensembl:ENSSSCT00000030162 Uniprot:I3L8B8
Length = 488
Score = 188 (71.2 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 46/103 (44%), Positives = 64/103 (62%)
Query: 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYP----DVQTAVV 114
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +NG +QA+++YP V A
Sbjct: 97 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNG-IQAMVEYPLFFKSVLCAQK 155
Query: 115 AKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP 157
AK AL G IY G C L I Y+R T L++ N++ S DYT P
Sbjct: 156 AKAALNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYTKP 197
>UNIPROTKB|I3LG16 [details] [associations]
symbol:HNRPLL "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0033120 "positive regulation of RNA splicing"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0033120 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 OMA:QIRIPNG Ensembl:ENSSSCT00000024049
Uniprot:I3LG16
Length = 537
Score = 188 (71.2 bits), Expect = 7.5e-14, P = 7.5e-14
Identities = 46/103 (44%), Positives = 64/103 (62%)
Query: 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYP----DVQTAVV 114
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +NG +QA+++YP V A
Sbjct: 157 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNG-IQAMVEYPLFFKSVLCAQK 215
Query: 115 AKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP 157
AK AL G IY G C L I Y+R T L++ N++ S DYT P
Sbjct: 216 AKAALNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYTKP 257
>UNIPROTKB|F1N7G0 [details] [associations]
symbol:HNRPLL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0033120 "positive regulation of RNA splicing"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0033120 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 OMA:QIRIPNG EMBL:DAAA02030598
IPI:IPI00709568 Ensembl:ENSBTAT00000027405 Uniprot:F1N7G0
Length = 541
Score = 188 (71.2 bits), Expect = 7.6e-14, P = 7.6e-14
Identities = 44/99 (44%), Positives = 62/99 (62%)
Query: 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 118
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +NG +QA++ + V A AK A
Sbjct: 165 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNG-IQAMLMFESVLCAQKAKAA 223
Query: 119 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP 157
L G IY G C L I Y+R T L++ N++ S DYT P
Sbjct: 224 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYTKP 261
>UNIPROTKB|D6W592 [details] [associations]
symbol:HNRPLL "Heterogeneous nuclear ribonucleoprotein
L-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CH471053
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0030529 EMBL:AC011247 IPI:IPI00103247 UniGene:Hs.445497
HGNC:HGNC:25127 TIGRFAMs:TIGR01649 OMA:QIRIPNG
ProteinModelPortal:D6W592 SMR:D6W592 PRIDE:D6W592
Ensembl:ENST00000449105 PhylomeDB:D6W592 ArrayExpress:D6W592
Bgee:D6W592 Uniprot:D6W592
Length = 542
Score = 188 (71.2 bits), Expect = 7.6e-14, P = 7.6e-14
Identities = 44/99 (44%), Positives = 62/99 (62%)
Query: 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 118
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +NG +QA++ + V A AK A
Sbjct: 166 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNG-IQAMLMFESVLCAQKAKAA 224
Query: 119 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP 157
L G IY G C L I Y+R T L++ N++ S DYT P
Sbjct: 225 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYTKP 262
>UNIPROTKB|J9P3Y8 [details] [associations]
symbol:HNRPLL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 OMA:QIRIPNG EMBL:AAEX03010867
Ensembl:ENSCAFT00000049490 Uniprot:J9P3Y8
Length = 545
Score = 188 (71.2 bits), Expect = 7.7e-14, P = 7.7e-14
Identities = 44/99 (44%), Positives = 62/99 (62%)
Query: 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 118
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +NG +QA++ + V A AK A
Sbjct: 169 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNG-IQAMLMFESVLCAQKAKAA 227
Query: 119 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP 157
L G IY G C L I Y+R T L++ N++ S DYT P
Sbjct: 228 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYTKP 265
>DICTYBASE|DDB_G0284321 [details] [associations]
symbol:DDB_G0284321 "putative polypyrimidine tract
binding protein (PTBP1)" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0284321 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000064 eggNOG:NOG263741 OMA:DATENEI
RefSeq:XP_638677.1 ProteinModelPortal:Q54PW8 SMR:Q54PW8
EnsemblProtists:DDB0233645 GeneID:8624506 KEGG:ddi:DDB_G0284321
InParanoid:Q54PW8 Uniprot:Q54PW8
Length = 892
Score = 191 (72.3 bits), Expect = 8.1e-14, P = 8.1e-14
Identities = 46/130 (35%), Positives = 72/130 (55%)
Query: 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVA 115
E + +LL +I N Y +T+D L VFS +G + KI +F K+G Q+LI+ + A A
Sbjct: 395 ETPNCILLVTISNYFYNITIDELFKVFSHYGTILKILLFTKSGNYQSLIEMKTPEEATKA 454
Query: 116 KEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSIL--GQQP 173
K L+G I + C L I YS T L IK NN++SRD+T+ +++ + G
Sbjct: 455 KNVLDGVNINNS--CSLKIQYSSLTSLKIKYNNEKSRDFTVMDHHLIDPTTGLTPPGLLT 512
Query: 174 VPMVGATANQ 183
P+ G+++ Q
Sbjct: 513 PPIPGSSSVQ 522
>UNIPROTKB|F1LQ48 [details] [associations]
symbol:Hnrnpl "Protein Hnrnpl" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 RGD:71059 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 OMA:RPTSVKV IPI:IPI00201964
Ensembl:ENSRNOT00000027425 ArrayExpress:F1LQ48 Uniprot:F1LQ48
Length = 595
Score = 186 (70.5 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 56/161 (34%), Positives = 87/161 (54%)
Query: 32 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 89
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 129 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 188
Query: 90 KIAMFDKNGGLQALIQYP---DVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKV 146
+I +F KNG +QA+I P VQ+A AK +L G IY G C L I Y++ T L++
Sbjct: 189 RIVIFRKNG-VQAMIVPPTFDSVQSAQRAKASLNGADIYSG-CCTLKIEYAKPTRLNVFK 246
Query: 147 NNDRSRDYTLPSTPMVN---SQPSILGQQPVPMVGATANQY 184
N+ + DYT P+ S P+ +QP P++G +Y
Sbjct: 247 NDQDTWDYTNPNLSGQGDPGSNPNKRQRQP-PLLGDHPAEY 286
>FB|FBgn0003435 [details] [associations]
symbol:sm "smooth" species:7227 "Drosophila melanogaster"
[GO:0030529 "ribonucleoprotein complex" evidence=NAS] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007411 "axon guidance" evidence=IMP] [GO:0008343 "adult
feeding behavior" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0007411
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0008343
KO:K13159 GeneTree:ENSGT00550000074508 UniGene:Dm.7773 GeneID:37254
KEGG:dme:Dmel_CG9218 CTD:37254 FlyBase:FBgn0003435 ChiTaRS:sm
GenomeRNAi:37254 NextBio:802755 EMBL:BT011352 RefSeq:NP_001027439.2
SMR:Q6NND8 STRING:Q6NND8 EnsemblMetazoa:FBtr0301609 Uniprot:Q6NND8
Length = 480
Score = 183 (69.5 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 50/135 (37%), Positives = 76/135 (56%)
Query: 51 DGKKLEPES----NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQY 106
D ++ PE+ ++LL +I N Y +T+DVLH + G V +I +F KNG +QA++++
Sbjct: 68 DLRRKRPETTRPNHILLFTIINPFYPITVDVLHKICHPHGQVLRIVIFKKNG-VQAMVEF 126
Query: 107 PDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNN-DRSRDYTLPSTPMVNSQ 165
++ A A+E L G IY G C L I Y++ L++ N D S DYTL ST + +
Sbjct: 127 DNLDAATRARENLNGADIY-AGCCTLKIDYAKPEKLNVYKNEPDTSWDYTL-STGEILPK 184
Query: 166 PSILGQQPV-PMVGA 179
P +LG P GA
Sbjct: 185 PPLLGPGAAFPPFGA 199
>GENEDB_PFALCIPARUM|PFF0320c [details] [associations]
symbol:PFF0320c "polypyrimidine tract binding
protein, putative" species:5833 "Plasmodium falciparum" [GO:0008187
"poly-pyrimidine tract binding" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AL844505 GO:GO:0008187 RefSeq:XP_966055.1
ProteinModelPortal:C6KSR3 EnsemblProtists:PFF0320c:mRNA
GeneID:3885785 KEGG:pfa:PFF0320c EuPathDB:PlasmoDB:PF3D7_0606500
HOGENOM:HOG000281449 OMA:DATENEI ProtClustDB:CLSZ2432274
Uniprot:C6KSR3
Length = 663
Score = 179 (68.1 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 46/122 (37%), Positives = 69/122 (56%)
Query: 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGL-QALIQYPDVQTAVVAKE 117
S V+L S+ N+ Y V +++++ +FS G V+KI F +N L QAL+Q+ +V+TA A +
Sbjct: 315 SKVILVSVINLHYPVDIELIYYLFSKCGTVEKIITFSRNPVLYQALVQFDNVETAKEAIK 374
Query: 118 ALEGHCIYDGGFCK-LHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSIL---GQQP 173
L IYDG C ++I YS +L IK NN S DYT+ + + P + G P
Sbjct: 375 TLHNRNIYDG--CNTINIQYSFLKELVIKGNNSSSWDYTISNEKKTKNFPVLQNSHGVLP 432
Query: 174 VP 175
P
Sbjct: 433 TP 434
>UNIPROTKB|C6KSR3 [details] [associations]
symbol:PFF0320c "Polypyrimidine tract binding protein,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0008187
"poly-pyrimidine tract binding" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AL844505 GO:GO:0008187 RefSeq:XP_966055.1
ProteinModelPortal:C6KSR3 EnsemblProtists:PFF0320c:mRNA
GeneID:3885785 KEGG:pfa:PFF0320c EuPathDB:PlasmoDB:PF3D7_0606500
HOGENOM:HOG000281449 OMA:DATENEI ProtClustDB:CLSZ2432274
Uniprot:C6KSR3
Length = 663
Score = 179 (68.1 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 46/122 (37%), Positives = 69/122 (56%)
Query: 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGL-QALIQYPDVQTAVVAKE 117
S V+L S+ N+ Y V +++++ +FS G V+KI F +N L QAL+Q+ +V+TA A +
Sbjct: 315 SKVILVSVINLHYPVDIELIYYLFSKCGTVEKIITFSRNPVLYQALVQFDNVETAKEAIK 374
Query: 118 ALEGHCIYDGGFCK-LHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSIL---GQQP 173
L IYDG C ++I YS +L IK NN S DYT+ + + P + G P
Sbjct: 375 TLHNRNIYDG--CNTINIQYSFLKELVIKGNNSSSWDYTISNEKKTKNFPVLQNSHGVLP 432
Query: 174 VP 175
P
Sbjct: 433 TP 434
>UNIPROTKB|K7ES59 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC006273 HGNC:HGNC:9583
Ensembl:ENST00000586481 Uniprot:K7ES59
Length = 209
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 43/111 (38%), Positives = 62/111 (55%)
Query: 18 VKFQSHRS-RDYTNPYLPVAPSAIDA-----SGQLSVG-----LD-GKKLEPESNVLLAS 65
++F +H+ + ++P A +A+ A SG L++ +D G + +S VL
Sbjct: 98 IQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRII 157
Query: 66 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 116
+EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +A AK
Sbjct: 158 VENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAK 208
>UNIPROTKB|K7EKJ7 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC006273 HGNC:HGNC:9583
Ensembl:ENST00000589575 Uniprot:K7EKJ7
Length = 236
Score = 157 (60.3 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 42/108 (38%), Positives = 62/108 (57%)
Query: 18 VKFQSHRS-RDYTNPYLPVAPSAIDA--SGQLSVG-----LD-GKKLEPESNVLLASIEN 68
++F +H+ + ++P A A+++ SG L++ +D G + +S VL +EN
Sbjct: 128 IQFSNHKELKTDSSPNQAAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVEN 187
Query: 69 MQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 116
+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +A AK
Sbjct: 188 LFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAK 235
>UNIPROTKB|F6Q0P6 [details] [associations]
symbol:PTBP2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000177 "regulation of neural precursor cell
proliferation" evidence=IEA] [GO:0033119 "negative regulation of
RNA splicing" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0033119
GO:GO:0006376 GeneTree:ENSGT00550000074508 EMBL:DAAA02007826
IPI:IPI00876801 Ensembl:ENSBTAT00000011602 OMA:HICNACC
Uniprot:F6Q0P6
Length = 236
Score = 148 (57.2 bits), Expect = 3.2e-09, P = 3.2e-09
Identities = 43/110 (39%), Positives = 54/110 (49%)
Query: 8 ITYSAHTDLSV-KFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASI 66
I YS H +L + R++ V + SG +V + +S VL I
Sbjct: 128 IQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGT-TVS-ESAVTPAQSPVLRIII 185
Query: 67 ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 116
+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 186 DNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAK 235
>WB|WBGene00016624 [details] [associations]
symbol:C44B7.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:FO080141 eggNOG:NOG326285 KO:K13159
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
HOGENOM:HOG000293298 OMA:RPTSVKV RefSeq:NP_495411.2
ProteinModelPortal:Q95QR5 SMR:Q95QR5 STRING:Q95QR5 PaxDb:Q95QR5
PRIDE:Q95QR5 EnsemblMetazoa:C44B7.2a.1 EnsemblMetazoa:C44B7.2a.2
EnsemblMetazoa:C44B7.2a.3 GeneID:3565706 KEGG:cel:CELE_C44B7.2
UCSC:C44B7.2a.1 CTD:3565706 WormBase:C44B7.2a InParanoid:Q95QR5
NextBio:957535 ArrayExpress:Q95QR5 Uniprot:Q95QR5
Length = 597
Score = 151 (58.2 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 30/99 (30%), Positives = 58/99 (58%)
Query: 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 118
+ VL+ ++ N QY + DV++ + +A G V ++A+ K +QAL+++ ++ A AK A
Sbjct: 120 NKVLVVTVLNAQYPIDADVIYQISNAQGKVLRVAVMHKPTVVQALVEFESMEVAKAAKHA 179
Query: 119 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLP 157
+ G IY G C L + +++ + ++ + RD+TLP
Sbjct: 180 MNGADIYSG-CCTLKVEFAKPDRVRVQRQDKDQRDFTLP 217
>UNIPROTKB|C9JJZ7 [details] [associations]
symbol:HNRPLL "Heterogeneous nuclear ribonucleoprotein
L-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC011247 HGNC:HGNC:25127 HOGENOM:HOG000168824 IPI:IPI00915954
ProteinModelPortal:C9JJZ7 SMR:C9JJZ7 STRING:C9JJZ7
Ensembl:ENST00000425682 ArrayExpress:C9JJZ7 Bgee:C9JJZ7
Uniprot:C9JJZ7
Length = 149
Score = 102 (41.0 bits), Expect = 0.00028, P = 0.00028
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALI 104
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +NG +QA++
Sbjct: 105 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNG-IQAMV 149
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.394 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 264 221 0.00095 112 3 11 22 0.40 33
32 0.40 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 78
No. of states in DFA: 597 (63 KB)
Total size of DFA: 168 KB (2098 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.88u 0.15s 19.03t Elapsed: 00:00:01
Total cpu time: 18.89u 0.15s 19.04t Elapsed: 00:00:01
Start: Mon May 20 17:50:54 2013 End: Mon May 20 17:50:55 2013