BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024708
(264 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FGL9|PTBP2_ARATH Polypyrimidine tract-binding protein homolog 2 OS=Arabidopsis
thaliana GN=At5g53180 PE=2 SV=1
Length = 429
Score = 304 bits (778), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 139/155 (89%), Positives = 152/155 (98%)
Query: 1 MGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESN 60
+G C+L+ITYSAHTDL+VKFQSHRSRDYTNPYLPVAPSAID++GQ++VG+DGKK+EPESN
Sbjct: 185 VGQCSLKITYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDSTGQVAVGVDGKKMEPESN 244
Query: 61 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 120
VLLASIENMQYAVTLDVLHMVF+AFG VQKIAMFDKNGG+QALIQY DVQTAVVAKEALE
Sbjct: 245 VLLASIENMQYAVTLDVLHMVFAAFGEVQKIAMFDKNGGVQALIQYSDVQTAVVAKEALE 304
Query: 121 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT 155
GHCIYDGGFCKLHI+YSRHTDLSIKVNNDRSRDYT
Sbjct: 305 GHCIYDGGFCKLHITYSRHTDLSIKVNNDRSRDYT 339
Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 76/126 (60%), Gaps = 7/126 (5%)
Query: 60 NVLLASIE-NMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 118
NVLL +IE + V++DVLH+VFSAFG V KI F+K G QAL+Q+ D +TA AK A
Sbjct: 111 NVLLVTIEGDDARMVSIDVLHLVFSAFGFVHKITTFEKTAGYQALVQFTDAETATAAKLA 170
Query: 119 LEGHCI------YDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQ 172
L+G I G C L I+YS HTDL++K + RSRDYT P P+ S GQ
Sbjct: 171 LDGRSIPRYLLAETVGQCSLKITYSAHTDLTVKFQSHRSRDYTNPYLPVAPSAIDSTGQV 230
Query: 173 PVPMVG 178
V + G
Sbjct: 231 AVGVDG 236
>sp|Q9MAC5|PTBP1_ARATH Polypyrimidine tract-binding protein homolog 1 OS=Arabidopsis
thaliana GN=PTB PE=2 SV=1
Length = 399
Score = 256 bits (654), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 134/234 (57%), Positives = 160/234 (68%), Gaps = 29/234 (12%)
Query: 1 MGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESN 60
+G C+LR++YSAHTDL++KFQSHRSRDYTNPYLPV +A+D S Q ++G DGKK+E +SN
Sbjct: 184 VGSCSLRMSYSAHTDLNIKFQSHRSRDYTNPYLPVNQTAMDGSMQPALGADGKKVESQSN 243
Query: 61 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 120
VLL IENMQYAVT+DVLH VFSA+G VQKIA+F+KNG QALIQY D+ TA +AKEALE
Sbjct: 244 VLLGLIENMQYAVTVDVLHTVFSAYGTVQKIAIFEKNGSTQALIQYSDIPTAAMAKEALE 303
Query: 121 GHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVGAT 180
GHCIYDGG+CKL +SYSRHTDL++K +D+SRDYTLP S+L Q P V +
Sbjct: 304 GHCIYDGGYCKLRLSYSRHTDLNVKAFSDKSRDYTLPDL-------SLLVAQKGPAVSGS 356
Query: 181 ANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMPMG 234
A PP AGW P A G PYM P S P G
Sbjct: 357 A-----------PP----------AGWQN-PQAQSQYSGYGGSPYMYPSSDPNG 388
Score = 107 bits (268), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 73/109 (66%), Gaps = 7/109 (6%)
Query: 60 NVLLASIENMQ-YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 118
NVLL + E ++ + V++DV+H+VFSAFG V KIA F+K G QAL+Q+ DV+TA A+ A
Sbjct: 110 NVLLVTFEGVESHEVSIDVIHLVFSAFGFVHKIATFEKAAGFQALVQFTDVETASAARSA 169
Query: 119 LEGHCI------YDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPM 161
L+G I G C L +SYS HTDL+IK + RSRDYT P P+
Sbjct: 170 LDGRSIPRYLLSAHVGSCSLRMSYSAHTDLNIKFQSHRSRDYTNPYLPV 218
>sp|Q29099|PTBP1_PIG Polypyrimidine tract-binding protein 1 OS=Sus scrofa GN=PTBP1 PE=2
SV=1
Length = 557
Score = 110 bits (275), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 67/144 (46%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Query: 52 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 111
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 233
Query: 112 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ 171
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P ++QPS L Q
Sbjct: 234 AQHAKLSLDGQNIYNAC-CTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDNQPS-LDQ 291
Query: 172 QPVPMVGA----TANQYNGAQFAP 191
GA +A+ Y GA F P
Sbjct: 292 TMAAAFGAPGIMSASPYAGAGFPP 315
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 4 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 34
CTLRI +S T L+VK+ + +SRDYT P LP
Sbjct: 251 CTLRIDFSKLTSLNVKYNNDKSRDYTRPDLP 281
>sp|Q00438|PTBP1_RAT Polypyrimidine tract-binding protein 1 OS=Rattus norvegicus
GN=Ptbp1 PE=1 SV=1
Length = 555
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 52 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 111
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 173 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 232
Query: 112 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 168
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 233 AQHAKLSLDGQNIYN-ACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 288
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 4 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS 38
CTLRI +S T L+VK+ + +SRDYT P LP S
Sbjct: 250 CTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDS 284
>sp|P17225|PTBP1_MOUSE Polypyrimidine tract-binding protein 1 OS=Mus musculus GN=Ptbp1
PE=1 SV=2
Length = 527
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 52 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 111
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 173 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 232
Query: 112 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 168
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 233 AQHAKLSLDGQNIYNAC-CTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 288
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 4 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--AIDASGQLSVGL 50
CTLRI +S T L+VK+ + +SRDYT P LP S ++D + + GL
Sbjct: 250 CTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGL 298
>sp|Q8WN55|PTBP1_BOVIN Polypyrimidine tract-binding protein 1 OS=Bos taurus GN=PTBP1 PE=2
SV=1
Length = 531
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 52 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 111
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 233
Query: 112 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 168
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 234 AQHAKLSLDGQNIYNAC-CTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 289
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 77/177 (43%), Gaps = 47/177 (26%)
Query: 4 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--AIDASGQLSVGLDGKKLE----- 56
CTLRI +S T L+VK+ + +SRDYT P LP S ++D + + GL +
Sbjct: 251 CTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGLSVPNVHGALAP 310
Query: 57 -----------------------PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI-A 92
++VLL S N + VT L ++F +G VQ++
Sbjct: 311 LAIPSAAAAAAAAGRIAIPGLAGAGNSVLLVSNLNPE-RVTPQSLFILFGVYGDVQRVKV 369
Query: 93 MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH-----ISYSRHTDLSI 144
+F+K AL+Q D A +A L GH KLH I+ S+H + +
Sbjct: 370 LFNKKE--NALVQMADGSQAQLAMSHLNGH--------KLHGKPVRITLSKHQSVQL 416
>sp|P26599|PTBP1_HUMAN Polypyrimidine tract-binding protein 1 OS=Homo sapiens GN=PTBP1
PE=1 SV=1
Length = 531
Score = 108 bits (271), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Query: 52 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 111
G + +S VL +EN+ Y VTLDVLH +FS FG V KI F KN QAL+QY D +
Sbjct: 174 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 233
Query: 112 AVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 168
A AK +L+G IY+ C L I +S+ T L++K NND+SRDYT P P +SQPS+
Sbjct: 234 AQHAKLSLDGQNIYNAC-CTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSL 289
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 81/176 (46%), Gaps = 45/176 (25%)
Query: 4 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--AID----ASGQLSV--------- 48
CTLRI +S T L+VK+ + +SRDYT P LP S ++D A+ LSV
Sbjct: 251 CTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGLSVPNVHGALAP 310
Query: 49 -------------------GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ 89
GL G ++VLL S N + VT L ++F +G VQ
Sbjct: 311 LAIPSAAAAAAAAGRIAIPGLAG----AGNSVLLVSNLNPE-RVTPQSLFILFGVYGDVQ 365
Query: 90 KIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSI 144
++ +F+K AL+Q D A +A L GH ++ + I+ S+H ++ +
Sbjct: 366 RVKILFNKKE--NALVQMADGNQAQLAMSHLNGHKLHGK---PIRITLSKHQNVQL 416
>sp|Q9Z118|PTBP3_RAT Polypyrimidine tract-binding protein 3 OS=Rattus norvegicus
GN=Ptbp3 PE=2 SV=1
Length = 523
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/209 (37%), Positives = 100/209 (47%), Gaps = 38/209 (18%)
Query: 43 SGQLSV----GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG 98
SG LS+ +G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN
Sbjct: 130 SGNLSLPGATSNEGTLLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNN 189
Query: 99 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS 158
QAL+QY D A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T
Sbjct: 190 QFQALLQYADPVNAQYAKMALDGQNIYNAC-CTLRIDFSKLTSLNVKYNNDKSRDFTRLD 248
Query: 159 TPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMP 218
P + QPS+ E PM AA +GA P S P
Sbjct: 249 LPTGDGQPSL--------------------------EPPM-----AAAFGA--PGIMSSP 275
Query: 219 MMGNHPYMPPGSMPMGPGMMQMHMPGQSG 247
G + P + P G+ +PG G
Sbjct: 276 YAGAAGFAPAIAFPQAAGLSVSAVPGALG 304
Score = 39.3 bits (90), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 4 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPV 35
CTLRI +S T L+VK+ + +SRD+T LP
Sbjct: 220 CTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPT 251
>sp|Q66H20|PTBP2_RAT Polypyrimidine tract-binding protein 2 OS=Rattus norvegicus
GN=Ptbp2 PE=2 SV=1
Length = 531
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 90/169 (53%), Gaps = 14/169 (8%)
Query: 6 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEP------ES 59
+ I YS H +L ++ + N V A+ A + L G + +S
Sbjct: 126 IYIQYSNHKEL-------KTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPAQS 178
Query: 60 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL 119
VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK AL
Sbjct: 179 PVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLAL 238
Query: 120 EGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 168
+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 239 DGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 286
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 39/167 (23%)
Query: 4 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLP------------VAPSAIDAS-----GQL 46
CTLRI +S +L+VK+ + +SRDYT P LP A A + S G L
Sbjct: 248 CTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAKETSLLAVPGAL 307
Query: 47 S------------------VGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPV 88
S VG+ G + +L++++ + VT L +F +G V
Sbjct: 308 SPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNLN--EEMVTPQSLFTLFGVYGDV 365
Query: 89 QKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 135
Q++ + N ALIQ D + +A L G +Y G ++ +S
Sbjct: 366 QRVKIL-YNKKDSALIQMADGNQSQLAMNHLNGQKMY-GKIIRVTLS 410
>sp|Q91Z31|PTBP2_MOUSE Polypyrimidine tract-binding protein 2 OS=Mus musculus GN=Ptbp2
PE=1 SV=2
Length = 531
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 90/169 (53%), Gaps = 14/169 (8%)
Query: 6 LRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEP------ES 59
+ I YS H +L ++ + N V A+ A + L G + +S
Sbjct: 126 IYIQYSNHKEL-------KTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPAQS 178
Query: 60 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL 119
VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK AL
Sbjct: 179 PVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKLAL 238
Query: 120 EGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 168
+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 239 DGQNIYN-ACCTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 286
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 39/167 (23%)
Query: 4 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLP------------VAPSAIDAS-----GQL 46
CTLRI +S +L+VK+ + +SRDYT P LP A A + S G L
Sbjct: 248 CTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAKETSLLAVPGAL 307
Query: 47 S------------------VGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPV 88
S VG+ G + +L++++ + VT L +F +G V
Sbjct: 308 SPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNLN--EEMVTPQSLFTLFGVYGDV 365
Query: 89 QKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 135
Q++ + N ALIQ D + +A L G +Y G ++ +S
Sbjct: 366 QRVKIL-YNKKDSALIQMADGNQSQLAMNHLNGQKMY-GKIIRVTLS 410
>sp|Q8BHD7|PTBP3_MOUSE Polypyrimidine tract-binding protein 3 OS=Mus musculus GN=Ptbp3
PE=2 SV=1
Length = 523
Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/219 (39%), Positives = 112/219 (51%), Gaps = 36/219 (16%)
Query: 43 SGQLSV----GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG 98
SG LS+ +G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN
Sbjct: 130 SGNLSLPGATANEGTLLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNN 189
Query: 99 GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPS 158
QAL+QY D A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T
Sbjct: 190 QFQALLQYADPVNAQYAKMALDGQNIYNAC-CTLRIDFSKLTSLNVKYNNDKSRDFTRLD 248
Query: 159 TPMVNSQPSILGQQPVPMV------GATANQYNGAQ-FAPPPPEQPMMHQPTAAGWG--A 209
P + QPS+ +P PM G ++ Y GA FAP + P AAG A
Sbjct: 249 LPTGDGQPSL---EP-PMAAAFGAPGIMSSPYAGAAGFAPA------IAFPQAAGLSVPA 298
Query: 210 VPPASQSMPMMGNHPYMPPGSMPMGPGMMQMHMPGQSGM 248
VP A + P ++ +M +PG SGM
Sbjct: 299 VPGA------------LGPLTLTSSAVSGRMAIPGASGM 325
Score = 39.3 bits (90), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 4 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLPV 35
CTLRI +S T L+VK+ + +SRD+T LP
Sbjct: 220 CTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPT 251
>sp|Q9UKA9|PTBP2_HUMAN Polypyrimidine tract-binding protein 2 OS=Homo sapiens GN=PTBP2
PE=1 SV=1
Length = 531
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 71/111 (63%), Gaps = 1/111 (0%)
Query: 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 117
+S VL I+NM Y VTLDVLH +FS FG V KI F KN QAL+QY D A AK
Sbjct: 177 QSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQYGDPVNAQQAKL 236
Query: 118 ALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 168
AL+G IY+ C L I +S+ +L++K NND+SRDYT P P + QP++
Sbjct: 237 ALDGQNIYNAC-CTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPAL 286
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 39/167 (23%)
Query: 4 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLP------------VAPSAIDAS-----GQL 46
CTLRI +S +L+VK+ + +SRDYT P LP A A + S G L
Sbjct: 248 CTLRIDFSKLVNLNVKYNNDKSRDYTRPDLPSGDGQPALDPAIAAAFAKETSLLAVPGAL 307
Query: 47 S------------------VGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPV 88
S VG+ G + +L++++ + VT L +F +G V
Sbjct: 308 SPLAIPNAAAAAAAAAAGRVGMPGVSAGGNTVLLVSNLN--EEMVTPQSLFTLFGVYGDV 365
Query: 89 QKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 135
Q++ + N ALIQ D + +A L G +Y G ++ +S
Sbjct: 366 QRVKIL-YNKKDSALIQMADGNQSQLAMNHLNGQKMY-GKIIRVTLS 410
>sp|Q6ICX4|PTBP3_ARATH Polypyrimidine tract-binding protein homolog 3 OS=Arabidopsis
thaliana GN=At1g43190 PE=2 SV=1
Length = 432
Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 74/112 (66%), Gaps = 2/112 (1%)
Query: 49 GLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPD 108
+ G++ EP + +LL +I +M Y +T+DVLH VFS +G V+K+ F K+ G QALIQY
Sbjct: 89 NIHGREDEP-NRILLVTIHHMLYPITVDVLHQVFSPYGFVEKLVTFQKSAGFQALIQYQV 147
Query: 109 VQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 160
Q A A+ AL+G IYDG C+L I +S +L + NNDRSRDYT P+ P
Sbjct: 148 QQCAASARTALQGRNIYDGC-CQLDIQFSNLEELQVNYNNDRSRDYTNPNLP 198
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 32/166 (19%)
Query: 2 GPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVA----------------------PSA 39
G C L I +S +L V + + RSRDYTNP LP SA
Sbjct: 166 GCCQLDIQFSNLEELQVNYNNDRSRDYTNPNLPAEQKGRSSHPCYGDTGVAYPQMANTSA 225
Query: 40 IDAS--GQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN 97
I A+ G L G+ G VL++++ ++ D L +FS +G + +I + +N
Sbjct: 226 IAAAFGGGLPPGITGTN--DRCTVLVSNLN--ADSIDEDKLFNLFSLYGNIVRIKLL-RN 280
Query: 98 GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLS 143
AL+Q D A +A L+G ++ +L +++S+H +++
Sbjct: 281 KPDHALVQMGDGFQAELAVHFLKGAMLFGK---RLEVNFSKHPNIT 323
>sp|O95758|PTBP3_HUMAN Polypyrimidine tract-binding protein 3 OS=Homo sapiens GN=PTBP3
PE=1 SV=2
Length = 552
Score = 105 bits (261), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 57/118 (48%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 51 DGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQ 110
+G L +S VL IEN+ Y VTL+VLH +FS FG V KI F KN QAL+QY D
Sbjct: 171 EGTVLPGQSPVLRIIIENLFYPVTLEVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPV 230
Query: 111 TAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSI 168
A AK AL+G IY+ C L I +S+ T L++K NND+SRD+T P + QPS+
Sbjct: 231 NAHYAKMALDGQNIYNAC-CTLRIDFSKLTSLNVKYNNDKSRDFTRLDLPTGDGQPSL 287
Score = 39.3 bits (90), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 4 CTLRITYSAHTDLSVKFQSHRSRDYTNPYLP 34
CTLRI +S T L+VK+ + +SRD+T LP
Sbjct: 249 CTLRIDFSKLTSLNVKYNNDKSRDFTRLDLP 279
>sp|Q8R081|HNRPL_MOUSE Heterogeneous nuclear ribonucleoprotein L OS=Mus musculus GN=Hnrnpl
PE=1 SV=2
Length = 586
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 32 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 89
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 160 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 219
Query: 90 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 149
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 220 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQ 277
Query: 150 RSRDYTLPS-----TPMVN-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 194
+ DYT P+ P N QP +LG P G + Y+ + PPPP
Sbjct: 278 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 335
>sp|P14866|HNRPL_HUMAN Heterogeneous nuclear ribonucleoprotein L OS=Homo sapiens GN=HNRNPL
PE=1 SV=2
Length = 589
Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/178 (33%), Positives = 93/178 (52%), Gaps = 17/178 (9%)
Query: 32 YLPVAPSAIDASGQLSVGLDGKKLEPES--NVLLASIENMQYAVTLDVLHMVFSAFGPVQ 89
Y+ P+ ++ S + G + S +VLL +I N Y++T DVL+ + + GPVQ
Sbjct: 163 YIAGHPAFVNYSTSQKISRPGDSDDSRSVNSVLLFTILNPIYSITTDVLYTICNPCGPVQ 222
Query: 90 KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNND 149
+I +F KN G+QA++++ VQ+A AK +L G IY G C L I Y++ T L++ N+
Sbjct: 223 RIVIFRKN-GVQAMVEFDSVQSAQRAKASLNGADIY-SGCCTLKIEYAKPTRLNVFKNDQ 280
Query: 150 RSRDYTLPS-----TPMVN-----SQPSILGQQPVPMV---GATANQYNGAQFAPPPP 194
+ DYT P+ P N QP +LG P G + Y+ + PPPP
Sbjct: 281 DTWDYTNPNLSGQGDPGSNPNKRQRQPPLLGDHPAEYGGPHGGYHSHYHDEGYGPPPP 338
>sp|Q8WVV9|HNRLL_HUMAN Heterogeneous nuclear ribonucleoprotein L-like OS=Homo sapiens
GN=HNRPLL PE=1 SV=1
Length = 542
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 98/194 (50%), Gaps = 22/194 (11%)
Query: 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 118
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 166 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 224
Query: 119 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 178
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 225 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 280
Query: 179 ATANQYNGAQFAPPPPEQPMMHQPTAAGWGA----------VPPASQSMPMMGNHPYMPP 228
+ + + P P+ P+ G+ +P AS S GN P
Sbjct: 281 EHPSSFRHDGYGSHGPLLPL---PSRYRMGSRDTPELVAYPLPQASSSYMHGGN----PS 333
Query: 229 GSMPMGPGMMQMHM 242
GS+ M G+ Q+ M
Sbjct: 334 GSVVMVSGLHQLKM 347
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 2 GPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 33
G CTL+I Y+ T L+V + S DYT PYL
Sbjct: 233 GCCTLKIEYARPTRLNVIRNDNDSWDYTKPYL 264
>sp|Q921F4|HNRLL_MOUSE Heterogeneous nuclear ribonucleoprotein L-like OS=Mus musculus
GN=Hnrpll PE=1 SV=3
Length = 591
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 95/190 (50%), Gaps = 14/190 (7%)
Query: 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEA 118
+ VLL SI+N Y +T+DVL+ V + G VQ+I +F +N G+QA++++ V A AK A
Sbjct: 215 NKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAA 273
Query: 119 LEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQQPVPMVG 178
L G IY G C L I Y+R T L++ N++ S DYT P + + G+Q ++G
Sbjct: 274 LNGADIY-AGCCTLKIEYARPTRLNVIRNDNDSWDYT---KPYLGRRDRGKGRQRQAILG 329
Query: 179 ATANQYNGAQFAP-----PPPEQPMMHQPTAAGWGAVP-PASQSMPMMGNHPYMPPGSMP 232
+ + + P P + M A P P + S M G P GS+
Sbjct: 330 DHPSSFRHDGYGSHGPLLPLPSRYRMGSRDTPELVAYPLPQASSSYMHGGS---PSGSVV 386
Query: 233 MGPGMMQMHM 242
M G+ Q+ M
Sbjct: 387 MVSGLHQLKM 396
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 2 GPCTLRITYSAHTDLSVKFQSHRSRDYTNPYL 33
G CTL+I Y+ T L+V + S DYT PYL
Sbjct: 282 GCCTLKIEYARPTRLNVIRNDNDSWDYTKPYL 313
>sp|Q8LPQ9|FPA_ARATH Flowering time control protein FPA OS=Arabidopsis thaliana GN=FPA
PE=2 SV=2
Length = 901
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 25/149 (16%)
Query: 77 VLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 136
+LH FG ++++ + AL+++ + A KE L+G + ++ I Y
Sbjct: 224 ILHNAMILFGEIERVKSYPSRNF--ALVEFRSAEEARQCKEGLQGRLFNN---PRIKIMY 278
Query: 137 S------RHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILGQ--------QPVPMVGATAN 182
S D S RSR T M N+ PS + P+ G
Sbjct: 279 SNDELPPEQDDTSFYSGMKRSR------TDMFNNDPSFVSSPHSTGIPGSMRPLRGTNER 332
Query: 183 QYNGAQFAPPPPEQPMMHQPTAAGWGAVP 211
YNGA++ ++P +P+A G G +P
Sbjct: 333 SYNGAEYNDVVGKEPNWRRPSANGTGILP 361
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 19/106 (17%)
Query: 33 LPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 92
L + P D SG S L L PE+ T L +F +G + +I
Sbjct: 3 LSMKPFRADDSGFQSNNLWVGSLTPET--------------TESDLTELFGRYGDIDRIT 48
Query: 93 MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 138
++ G A I Y V+ AV AKEAL+G + ++ I Y+R
Sbjct: 49 VYSSRGF--AFIYYRHVEEAVAAKEALQGANL---NGSQIKIEYAR 89
>sp|P45429|SNRPA_XENLA U1 small nuclear ribonucleoprotein A OS=Xenopus laevis GN=snrpa
PE=2 SV=1
Length = 282
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 82/215 (38%), Gaps = 54/215 (25%)
Query: 53 KKLEPESNVLLASI-ENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGL--QALIQYPDV 109
+++ P + + + ++ E ++ L+ +FS FG + I + +N + QA + + +
Sbjct: 4 QEVRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDI-LVSRNLKMRGQAFVIFKET 62
Query: 110 QTAVVAKEALEGHCIYDGGFCKLHISYSR-HTDLSIK-----VNNDRSRDYTLPSTPMVN 163
+A A +++G YD + I YS+ +D+ K V DR R
Sbjct: 63 SSATNALRSMQGFPFYD---KPMRIQYSKTDSDIIAKMKGTFVERDRKRQEKR------- 112
Query: 164 SQPSILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNH 223
+ VP V N GA P P Q A Q MP M
Sbjct: 113 -------KVKVPEVQGVKNAMPGAALLPGVPGQM--------------AAMQDMPGMTQA 151
Query: 224 PYMPPGSMPMGPGMMQMHMPGQSGMQHHHGAMPPP 258
P M MHM GQ+ HH G MPPP
Sbjct: 152 PRM-------------MHMAGQAPYMHHPGMMPPP 173
>sp|Q8ITY4|PM14_CAEEL Pre-mRNA branch site p14-like protein OS=Caenorhabditis elegans
GN=C50D2.5 PE=3 SV=2
Length = 138
Score = 37.7 bits (86), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 52 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD--KNGGLQALIQYPDV 109
G KL PE N +L I+N+ Y +T + ++ +F FG V++I + + + G A + Y D+
Sbjct: 10 GAKLPPEVNRIL-YIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETRG-TAFVVYEDI 67
Query: 110 QTAVVAKEALEGHCI 124
A A E L G+ +
Sbjct: 68 FDAKTACEHLSGYNV 82
>sp|O60059|YG58_SCHPO Pumilio domain-containing protein C56F2.08c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC56F2.08c PE=1
SV=1
Length = 661
Score = 36.6 bits (83), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 66 IENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 125
+ N+ + +H +FSA+G V+ I M + A++ Y + +A+VA++AL ++
Sbjct: 4 VSNLPVGTSSSAIHALFSAYGNVKDIWMLSPDNS--AIVSYESLSSAIVARDALHNRPVF 61
Query: 126 DG 127
+
Sbjct: 62 EN 63
>sp|Q06AA4|SNRPA_PIG U1 small nuclear ribonucleoprotein A OS=Sus scrofa GN=SNRPA PE=2
SV=1
Length = 282
Score = 34.7 bits (78), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 85/210 (40%), Gaps = 38/210 (18%)
Query: 66 IENMQYAVTLD----VLHMVFSAFGPVQKIAMFD--KNGGLQALIQYPDVQTAVVAKEAL 119
I N+ + D L+ +FS FG + I + K G QA + + +V +A A ++
Sbjct: 14 INNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRG-QAFVIFKEVSSATNALRSM 72
Query: 120 EGHCIYDGGFCKLHISYSR-HTDLSIK-----VNNDRSRDYTLPSTPMV-NSQPSILGQQ 172
+G YD + I Y++ +D+ K V DR R+ P + S+ ++ G
Sbjct: 73 QGFPFYDK---PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPASKKAVQGGA 129
Query: 173 PVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMP 232
P+VGA P P PM P P P M P + PG +P
Sbjct: 130 AAPVVGAVQ--------GPVPGMPPMTQTPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIP 181
Query: 233 MGPGMM--QMHMPGQSGMQHHHGAMPPPRP 260
PG M Q MPGQ MPP +P
Sbjct: 182 --PGAMPPQQLMPGQ---------MPPAQP 200
>sp|O22922|RU2B1_ARATH U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana
GN=U2B'' PE=1 SV=1
Length = 232
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 52 GKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQT 111
G++ P +N+L I+N+ + T +L ++F + ++I M D G+ A ++Y D
Sbjct: 150 GQETMPPNNILF--IQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGI-AFVEYEDDVQ 206
Query: 112 AVVAKEALEGHCI 124
A +A + L+G I
Sbjct: 207 ASIAMQPLQGFKI 219
>sp|P09012|SNRPA_HUMAN U1 small nuclear ribonucleoprotein A OS=Homo sapiens GN=SNRPA PE=1
SV=3
Length = 282
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 85/210 (40%), Gaps = 38/210 (18%)
Query: 66 IENMQYAVTLD----VLHMVFSAFGPVQKIAMFD--KNGGLQALIQYPDVQTAVVAKEAL 119
I N+ + D L+ +FS FG + I + K G QA + + +V +A A ++
Sbjct: 14 INNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRG-QAFVIFKEVSSATNALRSM 72
Query: 120 EGHCIYDGGFCKLHISYSR-HTDLSIK-----VNNDRSRDYTLPSTPMV-NSQPSILGQQ 172
+G YD + I Y++ +D+ K V DR R+ P + ++ ++ G
Sbjct: 73 QGFPFYDK---PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGG 129
Query: 173 PVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMP 232
P+VGA P P PM P P P M P + PG +P
Sbjct: 130 ATPVVGAVQ--------GPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIP 181
Query: 233 MGPGMM--QMHMPGQSGMQHHHGAMPPPRP 260
PG M Q MPGQ MPP +P
Sbjct: 182 --PGAMPPQQLMPGQ---------MPPAQP 200
>sp|Q6BRR2|SEC31_DEBHA Protein transport protein SEC31 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=SEC31 PE=3 SV=2
Length = 1265
Score = 32.7 bits (73), Expect = 2.6, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 29/89 (32%)
Query: 155 TLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPAS 214
T PSTP VN P + P+ PPP+ P P
Sbjct: 1003 TAPSTPGVNEAPPTVTSAPI-----------------PPPKNPY-----------APAMQ 1034
Query: 215 QSMPMMGNHPYMPPGSMPMGPGMMQMHMP 243
+ P + +PY PP S PG++Q +P
Sbjct: 1035 AASPSLPKNPYAPPPSYGQ-PGILQPTIP 1062
>sp|Q2KIR1|SNRPA_BOVIN U1 small nuclear ribonucleoprotein A OS=Bos taurus GN=SNRPA PE=2
SV=1
Length = 282
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 84/210 (40%), Gaps = 38/210 (18%)
Query: 66 IENMQYAVTLD----VLHMVFSAFGPVQKIAMFD--KNGGLQALIQYPDVQTAVVAKEAL 119
I N+ + D L+ +FS FG + I + K G QA + + +V +A A ++
Sbjct: 14 INNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRG-QAFVIFKEVSSATNALRSM 72
Query: 120 EGHCIYDGGFCKLHISYSR-HTDLSIK-----VNNDRSRDYTLPSTPMV-NSQPSILGQQ 172
+G YD + I Y++ +D+ K V DR R+ P + ++ ++ G
Sbjct: 73 QGFPFYDK---PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQGGA 129
Query: 173 PVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMP 232
P+VG P P PM P P P M P + PG +P
Sbjct: 130 AAPVVGTVQ--------GPVPGMPPMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQLP 181
Query: 233 MGPGMM--QMHMPGQSGMQHHHGAMPPPRP 260
PG M Q MPGQ MPP +P
Sbjct: 182 --PGAMPPQQLMPGQ---------MPPAQP 200
>sp|Q62189|SNRPA_MOUSE U1 small nuclear ribonucleoprotein A OS=Mus musculus GN=Snrpa PE=2
SV=3
Length = 287
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 85/210 (40%), Gaps = 39/210 (18%)
Query: 66 IENMQYAVTLD----VLHMVFSAFGPVQKI--AMFDKNGGLQALIQYPDVQTAVVAKEAL 119
I N+ + D L+ +FS FG + I + K G QA + + +V +A A ++
Sbjct: 20 INNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRG-QAFVIFKEVTSATNALRSM 78
Query: 120 EGHCIYDGGFCKLHISYSR-HTDLSIK-----VNNDRSRDYTLPSTPMV-NSQPSILGQQ 172
+G YD + I Y++ +D+ K V DR R+ P + ++ ++ G
Sbjct: 79 QGFPFYDK---PMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKSQETPAAKKAVQGGA 135
Query: 173 PVPMVGATANQYNGAQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMP 232
P+VGA P P PM P P P M P + PG +P
Sbjct: 136 AAPVVGAVQ---------PVPGMPPMPQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIP 186
Query: 233 MGPGMM--QMHMPGQSGMQHHHGAMPPPRP 260
PG M Q MPGQ MPP +P
Sbjct: 187 --PGAMPPQQLMPGQ---------MPPAQP 205
>sp|Q9H9B1|EHMT1_HUMAN Histone-lysine N-methyltransferase EHMT1 OS=Homo sapiens GN=EHMT1
PE=1 SV=4
Length = 1298
Score = 31.6 bits (70), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 47/235 (20%), Positives = 82/235 (34%), Gaps = 45/235 (19%)
Query: 33 LPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA 92
L P ++ G V L ++E + + ++ N Q T V H + V K
Sbjct: 502 LANGPDVLETDGLQEVPLCSCRMETPKSREITTLANNQCMATESVDHELGRCTNSVVKYE 561
Query: 93 MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC----------KLHISYSRHTDL 142
+ + L+ D + +V + G C Y FC + IS+ H D
Sbjct: 562 LMRPSNKAPLLVLCEDHRGRMVKHQCCPG-CGY---FCTAGNFMECQPESSISHRFHKDC 617
Query: 143 SIKVNN-----------DRSRDYTLPSTPMVNSQPSILGQQPVPMVGATANQYNGAQFAP 191
+ +VNN ++++ T+ ++ + GQ+ + A+
Sbjct: 618 ASRVNNASYCPHCGEESSKAKEVTIAKADTTSTVTPVPGQEKGSALEGRAD--------- 668
Query: 192 PPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMPMGPGMMQMHMPGQS 246
T G A PP S+ + G ++P G P GP + PG S
Sbjct: 669 -----------TTTGSAAGPPLSEDDKLQGAASHVPEGFDPTGPAGLGRPTPGLS 712
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,367,167
Number of Sequences: 539616
Number of extensions: 4868210
Number of successful extensions: 18338
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 531
Number of HSP's that attempted gapping in prelim test: 16234
Number of HSP's gapped (non-prelim): 2071
length of query: 264
length of database: 191,569,459
effective HSP length: 115
effective length of query: 149
effective length of database: 129,513,619
effective search space: 19297529231
effective search space used: 19297529231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)