Query 024708
Match_columns 264
No_of_seqs 285 out of 1280
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 06:45:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024708.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024708hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1190 Polypyrimidine tract-b 100.0 9.4E-40 2E-44 309.3 14.7 152 2-158 216-391 (492)
2 KOG1190 Polypyrimidine tract-b 100.0 7.2E-32 1.6E-36 255.9 8.5 159 5-174 95-262 (492)
3 KOG1456 Heterogeneous nuclear 100.0 7.5E-30 1.6E-34 240.3 14.8 173 56-245 117-303 (494)
4 KOG1456 Heterogeneous nuclear 99.9 1.8E-25 3.8E-30 210.9 14.3 153 1-158 186-387 (494)
5 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1.2E-23 2.7E-28 205.6 21.4 129 2-160 66-194 (481)
6 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 8.8E-24 1.9E-28 206.6 17.7 138 2-145 162-356 (481)
7 PF13893 RRM_5: RNA recognitio 99.5 1.5E-13 3.3E-18 96.5 8.4 56 78-137 1-56 (56)
8 PLN03134 glycine-rich RNA-bind 99.4 1.6E-12 3.5E-17 109.3 10.2 77 57-139 32-113 (144)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 2.6E-12 5.7E-17 119.0 10.5 76 59-140 269-349 (352)
10 KOG0114 Predicted RNA-binding 99.3 3.2E-12 7E-17 103.1 6.4 81 57-142 16-97 (124)
11 PF00076 RRM_1: RNA recognitio 99.3 1.2E-11 2.7E-16 88.0 7.9 67 62-133 1-70 (70)
12 KOG0107 Alternative splicing f 99.3 6.8E-12 1.5E-16 109.0 7.7 78 59-142 10-87 (195)
13 KOG0117 Heterogeneous nuclear 99.3 9E-11 1.9E-15 113.7 15.6 78 58-144 258-335 (506)
14 TIGR01628 PABP-1234 polyadenyl 99.3 1.1E-10 2.4E-15 115.8 16.0 80 58-142 284-366 (562)
15 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.3 2.1E-11 4.5E-16 113.0 10.1 78 59-141 3-84 (352)
16 TIGR01659 sex-lethal sex-letha 99.3 1.8E-11 3.9E-16 116.4 9.8 79 56-140 104-187 (346)
17 KOG0148 Apoptosis-promoting RN 99.2 1.2E-10 2.7E-15 107.0 13.2 81 56-143 161-241 (321)
18 KOG0122 Translation initiation 99.2 4E-11 8.6E-16 108.8 8.2 78 57-140 187-269 (270)
19 KOG4206 Spliceosomal protein s 99.2 3.8E-11 8.2E-16 107.5 7.8 85 57-146 7-96 (221)
20 KOG0132 RNA polymerase II C-te 99.2 1.9E-09 4.2E-14 110.0 18.8 77 59-142 421-497 (894)
21 KOG0121 Nuclear cap-binding pr 99.2 8.8E-11 1.9E-15 98.0 7.5 76 57-137 34-113 (153)
22 TIGR01659 sex-lethal sex-letha 99.1 2.5E-10 5.3E-15 108.6 9.9 79 59-140 193-275 (346)
23 TIGR01648 hnRNP-R-Q heterogene 99.1 2.6E-10 5.6E-15 114.9 10.0 75 58-141 232-308 (578)
24 KOG0130 RNA-binding protein RB 99.1 1.9E-10 4.1E-15 96.9 6.9 76 58-138 71-150 (170)
25 PF14259 RRM_6: RNA recognitio 99.1 4.6E-10 9.9E-15 81.1 7.9 64 62-127 1-67 (70)
26 PLN03120 nucleic acid binding 99.1 6.5E-10 1.4E-14 102.1 10.0 74 59-138 4-78 (260)
27 KOG0111 Cyclophilin-type pepti 99.1 8.1E-11 1.8E-15 105.9 3.9 81 57-143 8-93 (298)
28 smart00362 RRM_2 RNA recogniti 99.1 1.4E-09 3E-14 75.7 9.0 68 62-134 2-71 (72)
29 smart00360 RRM RNA recognition 99.1 1.1E-09 2.3E-14 75.8 8.2 64 68-134 3-70 (71)
30 KOG0144 RNA-binding protein CU 99.0 1.5E-10 3.2E-15 111.9 4.3 128 57-190 122-261 (510)
31 TIGR01622 SF-CC1 splicing fact 99.0 9.9E-10 2.1E-14 105.7 10.1 77 58-139 185-265 (457)
32 TIGR01628 PABP-1234 polyadenyl 99.0 1.1E-09 2.4E-14 108.6 9.9 73 61-138 2-78 (562)
33 TIGR01642 U2AF_lg U2 snRNP aux 99.0 1.7E-09 3.6E-14 105.4 10.2 77 58-140 294-375 (509)
34 cd00590 RRM RRM (RNA recogniti 99.0 4.2E-09 9E-14 73.6 9.4 70 62-136 2-74 (74)
35 KOG4207 Predicted splicing fac 99.0 6.1E-10 1.3E-14 99.4 6.1 75 61-141 15-94 (256)
36 KOG0125 Ataxin 2-binding prote 99.0 8.6E-10 1.9E-14 103.6 7.3 75 60-140 97-174 (376)
37 TIGR01645 half-pint poly-U bin 99.0 2.7E-09 5.8E-14 108.2 10.2 76 59-140 204-284 (612)
38 PLN03213 repressor of silencin 98.9 3.1E-09 6.6E-14 104.5 9.7 78 62-142 11-90 (759)
39 PLN03121 nucleic acid binding 98.9 7.2E-09 1.6E-13 94.3 11.3 74 58-137 4-78 (243)
40 TIGR01645 half-pint poly-U bin 98.9 3E-09 6.5E-14 107.8 8.8 75 58-138 106-185 (612)
41 TIGR01622 SF-CC1 splicing fact 98.9 7.6E-09 1.6E-13 99.6 9.6 76 58-140 88-168 (457)
42 COG0724 RNA-binding proteins ( 98.9 1.2E-08 2.6E-13 86.5 9.3 74 59-138 115-193 (306)
43 KOG0113 U1 small nuclear ribon 98.8 1.4E-08 2.9E-13 94.7 9.4 80 57-142 99-183 (335)
44 TIGR01642 U2AF_lg U2 snRNP aux 98.8 1.1E-08 2.3E-13 99.7 8.9 80 57-139 407-501 (509)
45 KOG0415 Predicted peptidyl pro 98.8 9.3E-09 2E-13 97.8 6.9 82 55-141 235-320 (479)
46 KOG0109 RNA-binding protein LA 98.8 8.6E-09 1.9E-13 95.8 6.3 71 61-140 4-74 (346)
47 KOG0105 Alternative splicing f 98.8 8.8E-09 1.9E-13 90.8 5.9 78 59-141 6-84 (241)
48 TIGR01648 hnRNP-R-Q heterogene 98.8 1.5E-08 3.3E-13 102.3 8.4 65 59-126 58-126 (578)
49 KOG0145 RNA-binding protein EL 98.8 3.1E-08 6.7E-13 91.3 9.3 75 58-138 277-356 (360)
50 smart00361 RRM_1 RNA recogniti 98.8 3.1E-08 6.7E-13 72.9 7.4 56 75-134 2-69 (70)
51 KOG0126 Predicted RNA-binding 98.7 1.4E-09 3E-14 95.4 -0.4 74 57-136 33-111 (219)
52 KOG0145 RNA-binding protein EL 98.7 3.1E-08 6.6E-13 91.3 8.1 83 58-145 39-126 (360)
53 KOG0148 Apoptosis-promoting RN 98.7 4.2E-08 9.2E-13 90.5 7.2 78 59-140 60-142 (321)
54 KOG0131 Splicing factor 3b, su 98.6 6.7E-08 1.4E-12 84.8 6.6 74 59-138 9-87 (203)
55 KOG0108 mRNA cleavage and poly 98.6 8E-08 1.7E-12 94.2 7.8 78 60-142 19-100 (435)
56 KOG0127 Nucleolar protein fibr 98.6 1.4E-07 3.1E-12 93.7 8.1 77 59-140 117-196 (678)
57 KOG0123 Polyadenylate-binding 98.5 4.7E-07 1E-11 87.1 7.8 76 61-142 78-155 (369)
58 KOG0144 RNA-binding protein CU 98.4 4.1E-07 8.9E-12 88.4 7.3 83 60-144 35-121 (510)
59 KOG1457 RNA binding protein (c 98.4 4.2E-06 9E-11 75.9 11.6 84 59-144 34-122 (284)
60 KOG0153 Predicted RNA-binding 98.4 1.1E-06 2.4E-11 83.5 7.9 74 59-139 228-302 (377)
61 KOG0146 RNA-binding protein ET 98.4 4.9E-07 1.1E-11 83.7 5.5 81 55-141 281-366 (371)
62 KOG0146 RNA-binding protein ET 98.4 5.5E-07 1.2E-11 83.4 5.6 84 58-143 18-104 (371)
63 KOG0110 RNA-binding protein (R 98.3 1.1E-06 2.4E-11 89.4 7.6 72 62-138 518-596 (725)
64 KOG4660 Protein Mei2, essentia 98.3 3.8E-07 8.3E-12 90.6 4.0 67 58-127 74-140 (549)
65 KOG1457 RNA binding protein (c 98.3 5.1E-07 1.1E-11 81.7 4.0 67 58-126 209-275 (284)
66 KOG0123 Polyadenylate-binding 98.3 2E-06 4.3E-11 82.8 7.9 73 61-141 3-76 (369)
67 KOG0109 RNA-binding protein LA 98.3 9.7E-07 2.1E-11 82.4 4.8 74 57-139 76-149 (346)
68 KOG4206 Spliceosomal protein s 98.2 6.1E-06 1.3E-10 74.3 7.9 78 56-138 143-220 (221)
69 KOG0131 Splicing factor 3b, su 98.1 3.8E-06 8.1E-11 74.0 5.7 78 59-141 96-178 (203)
70 KOG4454 RNA binding protein (R 98.1 1E-06 2.2E-11 79.5 2.1 76 57-137 7-84 (267)
71 KOG0124 Polypyrimidine tract-b 98.1 2.7E-06 5.8E-11 81.7 4.9 68 64-135 116-188 (544)
72 KOG0147 Transcriptional coacti 98.1 4.1E-06 8.8E-11 83.3 5.9 69 62-136 281-354 (549)
73 KOG0110 RNA-binding protein (R 98.1 3.8E-06 8.2E-11 85.6 4.7 77 60-142 614-695 (725)
74 KOG4661 Hsp27-ERE-TATA-binding 98.1 1.1E-05 2.3E-10 81.1 7.6 79 58-141 404-486 (940)
75 KOG0117 Heterogeneous nuclear 98.0 2.2E-05 4.8E-10 76.8 9.6 77 57-137 81-161 (506)
76 KOG0151 Predicted splicing reg 97.9 1.5E-05 3.3E-10 81.5 6.5 82 56-142 171-259 (877)
77 KOG0533 RRM motif-containing p 97.9 4.1E-05 9E-10 70.1 8.5 77 62-141 84-163 (243)
78 KOG0149 Predicted RNA-binding 97.9 3.6E-05 7.7E-10 70.0 7.4 67 59-127 10-81 (247)
79 KOG0127 Nucleolar protein fibr 97.8 5.5E-05 1.2E-09 75.7 8.4 78 58-140 291-378 (678)
80 KOG4208 Nucleolar RNA-binding 97.8 5.1E-05 1.1E-09 67.8 7.1 76 60-140 50-130 (214)
81 PF11608 Limkain-b1: Limkain b 97.8 9.3E-05 2E-09 57.9 7.6 70 60-140 3-77 (90)
82 KOG1548 Transcription elongati 97.8 7.3E-05 1.6E-09 71.3 7.3 79 57-140 132-221 (382)
83 KOG0106 Alternative splicing f 97.7 2.7E-05 5.8E-10 70.2 3.5 69 64-139 4-72 (216)
84 KOG0124 Polypyrimidine tract-b 97.7 0.00011 2.5E-09 70.7 7.7 76 57-135 444-530 (544)
85 KOG0116 RasGAP SH3 binding pro 97.5 0.00061 1.3E-08 66.9 9.9 74 62-141 291-368 (419)
86 KOG4209 Splicing factor RNPS1, 97.4 0.00042 9.2E-09 63.0 6.9 84 57-147 99-187 (231)
87 KOG4212 RNA-binding protein hn 97.4 0.0004 8.6E-09 68.3 7.0 74 57-136 534-607 (608)
88 PF08777 RRM_3: RNA binding mo 97.3 0.0008 1.7E-08 54.0 7.1 59 60-122 2-60 (105)
89 KOG4212 RNA-binding protein hn 97.3 0.0013 2.8E-08 64.8 8.8 74 57-135 42-119 (608)
90 KOG1855 Predicted RNA-binding 97.2 0.00024 5.2E-09 69.4 3.2 68 58-127 230-314 (484)
91 KOG1995 Conserved Zn-finger pr 97.2 0.00052 1.1E-08 65.6 4.8 80 56-141 63-155 (351)
92 KOG0106 Alternative splicing f 97.0 0.0005 1.1E-08 62.1 2.8 67 59-134 99-165 (216)
93 PF04847 Calcipressin: Calcipr 96.9 0.0027 5.8E-08 56.0 6.7 65 73-142 7-73 (184)
94 COG5175 MOT2 Transcriptional r 96.9 0.0025 5.5E-08 61.1 6.8 77 59-139 114-202 (480)
95 KOG1548 Transcription elongati 96.8 0.0039 8.6E-08 59.7 7.8 58 77-137 292-349 (382)
96 KOG0120 Splicing factor U2AF, 96.8 0.0032 6.9E-08 63.1 7.4 73 57-137 397-489 (500)
97 PF08952 DUF1866: Domain of un 96.8 0.0081 1.8E-07 51.3 8.4 77 56-140 24-107 (146)
98 KOG2314 Translation initiation 96.6 0.0053 1.2E-07 62.1 7.3 75 59-135 58-139 (698)
99 KOG2416 Acinus (induces apopto 96.5 0.0027 5.9E-08 64.4 4.5 87 57-147 442-529 (718)
100 KOG0147 Transcriptional coacti 96.4 0.0072 1.6E-07 60.7 6.6 63 76-142 468-530 (549)
101 PF14605 Nup35_RRM_2: Nup53/35 96.3 0.014 3E-07 41.3 5.9 51 61-116 3-53 (53)
102 KOG1996 mRNA splicing factor [ 96.3 0.0086 1.9E-07 56.6 6.1 78 58-138 280-365 (378)
103 PF05172 Nup35_RRM: Nup53/35/4 96.3 0.024 5.2E-07 45.4 7.9 71 61-139 8-91 (100)
104 KOG4849 mRNA cleavage factor I 96.2 0.16 3.5E-06 49.2 14.4 79 58-139 77-162 (498)
105 KOG4574 RNA-binding protein (c 96.2 0.0038 8.3E-08 65.4 3.3 67 72-141 309-375 (1007)
106 KOG2202 U2 snRNP splicing fact 96.1 0.003 6.4E-08 58.3 2.2 63 76-141 83-149 (260)
107 KOG0226 RNA-binding proteins [ 95.7 0.0052 1.1E-07 56.9 1.9 75 68-144 197-276 (290)
108 KOG4205 RNA-binding protein mu 95.5 0.017 3.6E-07 54.9 4.4 66 58-126 5-79 (311)
109 KOG4307 RNA binding protein RB 95.5 0.035 7.6E-07 57.6 6.8 69 61-134 869-941 (944)
110 KOG4211 Splicing factor hnRNP- 95.3 0.074 1.6E-06 53.1 8.4 69 60-135 11-81 (510)
111 KOG3152 TBP-binding protein, a 95.1 0.012 2.6E-07 54.5 2.1 66 60-127 75-156 (278)
112 KOG4205 RNA-binding protein mu 95.1 0.032 7E-07 53.0 5.0 76 58-140 96-176 (311)
113 PF15023 DUF4523: Protein of u 95.0 0.11 2.3E-06 44.8 7.2 74 56-136 83-158 (166)
114 KOG0120 Splicing factor U2AF, 94.9 0.024 5.3E-07 56.9 3.7 80 62-146 292-375 (500)
115 KOG4285 Mitotic phosphoprotein 94.5 0.1 2.2E-06 49.6 6.6 62 62-127 198-259 (350)
116 PF08675 RNA_bind: RNA binding 94.5 0.15 3.3E-06 40.0 6.5 57 58-121 8-64 (87)
117 KOG4210 Nuclear localization s 94.4 0.029 6.3E-07 52.5 2.7 76 58-140 184-264 (285)
118 KOG0112 Large RNA-binding prot 94.4 0.059 1.3E-06 57.1 5.1 80 56-140 452-531 (975)
119 PF10309 DUF2414: Protein of u 94.2 0.21 4.6E-06 36.8 6.4 53 61-119 7-62 (62)
120 PF04059 RRM_2: RNA recognitio 92.6 0.8 1.7E-05 36.5 7.8 79 60-140 2-87 (97)
121 KOG4676 Splicing factor, argin 92.6 0.15 3.2E-06 50.0 4.3 64 61-127 9-79 (479)
122 KOG4211 Splicing factor hnRNP- 91.8 0.41 8.9E-06 48.0 6.3 74 58-137 102-179 (510)
123 PF07576 BRAP2: BRCA1-associat 91.7 1.8 3.8E-05 35.2 9.0 58 69-126 21-81 (110)
124 KOG2068 MOT2 transcription fac 91.3 0.078 1.7E-06 50.6 0.8 72 62-137 80-160 (327)
125 PF03880 DbpA: DbpA RNA bindin 91.1 1.3 2.8E-05 32.9 7.1 67 62-137 3-74 (74)
126 KOG1924 RhoA GTPase effector D 89.2 2.8 6.1E-05 44.7 10.0 10 197-206 546-555 (1102)
127 KOG0115 RNA-binding protein p5 88.0 0.69 1.5E-05 43.1 4.2 66 59-126 31-99 (275)
128 KOG0112 Large RNA-binding prot 87.5 0.13 2.8E-06 54.7 -0.9 69 57-127 370-441 (975)
129 PF11767 SET_assoc: Histone ly 85.2 3.1 6.6E-05 31.0 5.7 56 71-134 10-65 (66)
130 KOG2318 Uncharacterized conser 82.7 6.5 0.00014 40.5 8.6 78 57-136 172-304 (650)
131 KOG2193 IGF-II mRNA-binding pr 80.2 1.2 2.7E-05 44.3 2.5 74 61-141 3-77 (584)
132 KOG1365 RNA-binding protein Fu 79.0 6.1 0.00013 39.1 6.7 56 62-117 162-224 (508)
133 KOG2893 Zn finger protein [Gen 77.5 28 0.00061 32.6 10.2 44 187-232 138-181 (341)
134 KOG0128 RNA-binding protein SA 77.4 1.9 4E-05 46.0 2.9 75 60-139 737-814 (881)
135 KOG1365 RNA-binding protein Fu 73.3 4.4 9.5E-05 40.0 4.1 79 59-142 280-364 (508)
136 KOG0804 Cytoplasmic Zn-finger 72.0 11 0.00023 37.9 6.5 67 58-126 73-142 (493)
137 KOG1924 RhoA GTPase effector D 71.0 30 0.00066 37.3 9.7 17 187-206 552-568 (1102)
138 KOG0129 Predicted RNA-binding 70.9 10 0.00022 38.5 6.1 59 57-118 368-432 (520)
139 PF10567 Nab6_mRNP_bdg: RNA-re 70.1 8.3 0.00018 36.7 5.0 77 59-140 15-108 (309)
140 KOG4307 RNA binding protein RB 66.9 7.6 0.00017 41.0 4.4 72 61-140 4-77 (944)
141 KOG2135 Proteins containing th 64.0 5.7 0.00012 40.1 2.7 64 72-141 384-447 (526)
142 KOG4849 mRNA cleavage factor I 59.8 63 0.0014 31.9 8.9 15 211-225 304-318 (498)
143 PF03467 Smg4_UPF3: Smg-4/UPF3 56.5 35 0.00075 29.7 6.1 81 60-142 8-100 (176)
144 KOG2193 IGF-II mRNA-binding pr 56.3 0.85 1.8E-05 45.4 -4.4 77 59-140 80-157 (584)
145 KOG2236 Uncharacterized conser 54.2 1.5E+02 0.0032 30.1 10.7 12 78-89 247-258 (483)
146 KOG2891 Surface glycoprotein [ 53.3 2.8 6.2E-05 39.9 -1.3 68 73-140 173-268 (445)
147 KOG4357 Uncharacterized conser 49.7 86 0.0019 26.7 7.1 64 58-126 65-140 (164)
148 KOG0129 Predicted RNA-binding 49.6 34 0.00074 34.9 5.5 59 57-117 257-324 (520)
149 KOG0105 Alternative splicing f 47.6 62 0.0014 29.3 6.3 62 61-127 117-178 (241)
150 KOG2591 c-Mpl binding protein, 44.9 85 0.0018 32.7 7.4 63 60-127 176-247 (684)
151 KOG0128 RNA-binding protein SA 41.1 4.3 9.4E-05 43.3 -2.3 60 61-122 669-732 (881)
152 PF01842 ACT: ACT domain; Int 39.9 1.1E+02 0.0023 20.7 5.4 58 61-120 2-62 (66)
153 PRK14548 50S ribosomal protein 39.3 1.5E+02 0.0033 23.0 6.6 47 72-118 31-80 (84)
154 KOG0981 DNA topoisomerase I [R 36.2 17 0.00036 37.8 1.1 10 1-10 496-505 (759)
155 KOG4483 Uncharacterized conser 30.8 1E+02 0.0023 30.9 5.4 54 60-118 392-446 (528)
156 COG1259 Uncharacterized conser 28.3 1.4E+02 0.0031 25.8 5.3 57 69-125 55-122 (151)
157 PF08544 GHMP_kinases_C: GHMP 27.7 2.3E+02 0.005 20.2 6.3 44 76-120 37-80 (85)
158 cd04889 ACT_PDH-BS-like C-term 27.3 1.9E+02 0.0042 19.2 6.3 45 72-116 9-55 (56)
159 KOG4019 Calcineurin-mediated s 27.2 1.1E+02 0.0024 27.5 4.5 60 78-141 32-91 (193)
160 PF05929 Phage_GPO: Phage caps 27.2 97 0.0021 29.2 4.4 64 72-139 38-110 (276)
161 KOG2375 Protein interacting wi 26.6 4.9E+02 0.011 28.1 9.8 15 233-247 610-624 (756)
162 PF02714 DUF221: Domain of unk 26.0 74 0.0016 29.3 3.5 33 102-139 1-33 (325)
163 cd04908 ACT_Bt0572_1 N-termina 25.2 2.4E+02 0.0052 19.6 8.1 51 62-116 4-57 (66)
164 KOG4264 Nucleo-cytoplasmic pro 24.0 3.6E+02 0.0079 28.1 7.9 8 254-261 632-639 (694)
165 PHA02529 O capsid-scaffolding 22.0 1.7E+02 0.0037 27.7 5.0 54 72-127 42-101 (278)
166 COG1217 TypA Predicted membran 21.7 91 0.002 32.1 3.3 73 77-157 464-545 (603)
167 KOG2236 Uncharacterized conser 21.2 3.2E+02 0.0069 27.8 6.9 21 59-84 236-256 (483)
No 1
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=100.00 E-value=9.4e-40 Score=309.32 Aligned_cols=152 Identities=42% Similarity=0.604 Sum_probs=126.4
Q ss_pred CCeEEEEeecCCCcceeecCCCCCCCCCCCCCCCCcc--ccc----c-c--------CCc--------cccCCCCCCCC-
Q 024708 2 GPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--AID----A-S--------GQL--------SVGLDGKKLEP- 57 (264)
Q Consensus 2 gCCtL~I~ySk~~~L~Vk~nn~~srDYTnp~Lp~~~~--al~----~-~--------g~~--------~~~~~G~~~~~- 57 (264)
|||||||+||||+.||||||||||||||||+||.++. +++ + . ++. +.+..|+...+
T Consensus 216 gcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~ 295 (492)
T KOG1190|consen 216 GCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPS 295 (492)
T ss_pred ceeEEEeehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCC
Confidence 8999999999999999999999999999999998842 111 0 0 011 11222333222
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEee
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 137 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~fS 137 (264)
.+.||+|+++|. +.||+|.||.||+.||+|+|||||.+++ .+|||||+|..+|+.|+++|+|++|||+ +|||.||
T Consensus 296 ~n~vllvsnln~-~~VT~d~LftlFgvYGdVqRVkil~nkk-d~ALIQmsd~~qAqLA~~hL~g~~l~gk---~lrvt~S 370 (492)
T KOG1190|consen 296 ANVVLLVSNLNE-EAVTPDVLFTLFGVYGDVQRVKILYNKK-DNALIQMSDGQQAQLAMEHLEGHKLYGK---KLRVTLS 370 (492)
T ss_pred CceEEEEecCch-hccchhHHHHHHhhhcceEEEEeeecCC-cceeeeecchhHHHHHHHHhhcceecCc---eEEEeec
Confidence 279999999997 8999999999999999999999876664 6899999999999999999999999997 9999999
Q ss_pred eCCCCceecCCCCCccCCCCC
Q 024708 138 RHTDLSIKVNNDRSRDYTLPS 158 (264)
Q Consensus 138 K~~~l~vk~n~~ksrDYT~p~ 158 (264)
||++++++++.++.+|||.+.
T Consensus 371 KH~~vqlp~egq~d~glT~dy 391 (492)
T KOG1190|consen 371 KHTNVQLPREGQEDQGLTKDY 391 (492)
T ss_pred cCccccCCCCCCccccccccC
Confidence 999999999877776666654
No 2
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.97 E-value=7.2e-32 Score=255.85 Aligned_cols=159 Identities=45% Similarity=0.655 Sum_probs=130.4
Q ss_pred EEEEeecCCCcceeecCCCCCCCCCCCCCCCCccccccc-----C--Cccc-c-CCCCCCCCCCcEEEEEEccCCcccCH
Q 024708 5 TLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDAS-----G--QLSV-G-LDGKKLEPESNVLLASIENMQYAVTL 75 (264)
Q Consensus 5 tL~I~ySk~~~L~Vk~nn~~srDYTnp~Lp~~~~al~~~-----g--~~~~-~-~~G~~~~~~s~VL~V~~lN~~~~VT~ 75 (264)
.++||||+|.+|..+-+ |+.-+++.+.... + +... + ..| ....+++||++.+.|+.|+||.
T Consensus 95 ~~yiq~sn~~~lkt~s~---------p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G-~~~~~n~vLr~iie~m~ypVsl 164 (492)
T KOG1190|consen 95 PIYIQYSNHSELKTDSQ---------PNQIRGQAVYQAVSSVQEIVLPLSASAVVVG-NEDGPNPVLRTIIENMFYPVSL 164 (492)
T ss_pred ceeehhhhHHHHhccCc---------hhhhhhhhHHhhhhccccccccccccccccc-ccCCCceeEEEEeccceeeeEH
Confidence 57899999999987432 1211222211110 0 0000 1 113 3457899999999999999999
Q ss_pred HHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEeeeCCCCceecCCCCCccCC
Q 024708 76 DVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYT 155 (264)
Q Consensus 76 d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~fSK~~~l~vk~n~~ksrDYT 155 (264)
|+||+|||+||.|+||..|+|+.+|||||||.|.+.|+.|+..|+|++||.+ ||+|||+|||++.|+||+|+|||||||
T Consensus 165 DVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyng-cCtLrId~Sklt~LnvKynndkSRDyT 243 (492)
T KOG1190|consen 165 DVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNG-CCTLRIDFSKLTDLNVKYNNDKSRDYT 243 (492)
T ss_pred HHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCc-eeEEEeehhhcccceeecccccccccc
Confidence 9999999999999999999999999999999999999999999999999997 999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 024708 156 LPSTPMVNSQPSILGQQPV 174 (264)
Q Consensus 156 ~p~lp~~~~qps~~G~~~~ 174 (264)
+|.||.++.||++.-..+.
T Consensus 244 np~LP~gd~~p~l~~~~~a 262 (492)
T KOG1190|consen 244 NPDLPVGDGQPSLDQLMAA 262 (492)
T ss_pred CCCCCCCccccccchhhhc
Confidence 9999999999987654433
No 3
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.97 E-value=7.5e-30 Score=240.28 Aligned_cols=173 Identities=35% Similarity=0.565 Sum_probs=142.8
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEE
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 135 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~ 135 (264)
..+|+||+++++|+.|+||.|+|++|+...|.|+||+||+|+ +.||+|||++.+.|++|+++|||.+||.+ ||+|+|+
T Consensus 117 ~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn-gVQAmVEFdsv~~AqrAk~alNGADIYsG-CCTLKIe 194 (494)
T KOG1456|consen 117 ATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN-GVQAMVEFDSVEVAQRAKAALNGADIYSG-CCTLKIE 194 (494)
T ss_pred CCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEecc-ceeeEEeechhHHHHHHHhhccccccccc-ceeEEEE
Confidence 468999999999999999999999999999999999999886 78999999999999999999999999998 9999999
Q ss_pred eeeCCCCceecCCCCCccCCCCCCCCC----------CCCCCCCCCCCCcccCCCcCCCCCC----CCCCCCCCCCCcCC
Q 024708 136 YSRHTDLSIKVNNDRSRDYTLPSTPMV----------NSQPSILGQQPVPMVGATANQYNGA----QFAPPPPEQPMMHQ 201 (264)
Q Consensus 136 fSK~~~l~vk~n~~ksrDYT~p~lp~~----------~~qps~~G~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 201 (264)
|+|.++|+|.+|+.++||||.|+++.. ..||.++|..|..+.|+..+||.+. .+.||+
T Consensus 195 yAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~-------- 266 (494)
T KOG1456|consen 195 YAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPS-------- 266 (494)
T ss_pred ecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCC--------
Confidence 999999999999999999999998541 2589999999999999888877542 222222
Q ss_pred CCcCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccCcCCC
Q 024708 202 PTAAGWGAVPPASQSMPMMGNHPYMPPGSMPMGPGMMQMHMPGQ 245 (264)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (264)
+.+.|.+++-+ ...| .++ ++|.+-|+-|+.|.+|+..
T Consensus 267 r~~~~~~~~~g--~a~p--~g~---~~g~VmMVyGLdh~k~N~d 303 (494)
T KOG1456|consen 267 RYRDGYRDGRG--YASP--GGG---APGCVMMVYGLDHGKMNCD 303 (494)
T ss_pred CCccccccCCC--CCCC--CCC---CCCcEEEEEeccccccchh
Confidence 23344444311 1111 334 6788889999999998753
No 4
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.93 E-value=1.8e-25 Score=210.86 Aligned_cols=153 Identities=24% Similarity=0.310 Sum_probs=118.0
Q ss_pred CCCeEEEEeecCCCcceeecCCCCCCCCCCCCCCCC-cc-----------ccccc------------------CCc----
Q 024708 1 MGPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVA-PS-----------AIDAS------------------GQL---- 46 (264)
Q Consensus 1 ~gCCtL~I~ySk~~~L~Vk~nn~~srDYTnp~Lp~~-~~-----------al~~~------------------g~~---- 46 (264)
+|||||||+|+|+++|||.+|+.++||||+|+|+.. +. ++.+. +++
T Consensus 186 sGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P 265 (494)
T KOG1456|consen 186 SGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPP 265 (494)
T ss_pred ccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCC
Confidence 699999999999999999999999999999999531 11 11110 000
Q ss_pred ccc----CCCC-----CCCCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHH
Q 024708 47 SVG----LDGK-----KLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 117 (264)
Q Consensus 47 ~~~----~~G~-----~~~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~ 117 (264)
+.- ..++ ...++++|++|+.|.- ..+++|.||+||+.||+|+||++++.+.+ .|+|||.|.++.++|+.
T Consensus 266 ~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh-~k~N~drlFNl~ClYGNV~rvkFmkTk~g-tamVemgd~~aver~v~ 343 (494)
T KOG1456|consen 266 SRYRDGYRDGRGYASPGGGAPGCVMMVYGLDH-GKMNCDRLFNLFCLYGNVERVKFMKTKPG-TAMVEMGDAYAVERAVT 343 (494)
T ss_pred CCCccccccCCCCCCCCCCCCCcEEEEEeccc-cccchhhhhhhhhhcCceeeEEEeecccc-eeEEEcCcHHHHHHHHH
Confidence 000 1110 1246789999999986 69999999999999999999997755534 79999999999999999
Q ss_pred HhcCCeeCCCccceEEEEeeeCCCCcee------cCCCCCccCCCCC
Q 024708 118 ALEGHCIYDGGFCKLHISYSRHTDLSIK------VNNDRSRDYTLPS 158 (264)
Q Consensus 118 ~LnG~~I~g~~~c~LrV~fSK~~~l~vk------~n~~ksrDYT~p~ 158 (264)
+||+..++|+ +|.|.+||+..+.-- -.+..-+||+.+.
T Consensus 344 hLnn~~lfG~---kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~Sk 387 (494)
T KOG1456|consen 344 HLNNIPLFGG---KLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSK 387 (494)
T ss_pred HhccCccccc---eEEEeeccccccccCCceecCCCCcchhhccccc
Confidence 9999999999 999999999876421 1123445777654
No 5
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.92 E-value=1.2e-23 Score=205.55 Aligned_cols=129 Identities=38% Similarity=0.603 Sum_probs=112.2
Q ss_pred CCeEEEEeecCCCcceeecCCCCCCCCCCCCCCCCcccccccCCccccCCCCCCCCCCcEEEEEEccCCcccCHHHHHHH
Q 024708 2 GPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLHMV 81 (264)
Q Consensus 2 gCCtL~I~ySk~~~L~Vk~nn~~srDYTnp~Lp~~~~al~~~g~~~~~~~G~~~~~~s~VL~V~~lN~~~~VT~d~L~~L 81 (264)
+++.|+|+||++++++...+++ + + ...++++|.|++.|+.+.+|+++|+++
T Consensus 66 ~g~~l~v~~s~~~~~~~~~~~~----~--------~-----------------~~~~~~~~~v~v~nl~~~vt~~~L~~~ 116 (481)
T TIGR01649 66 RGQPAFFNYSTSQEIKRDGNSD----F--------D-----------------SAGPNKVLRVIVENPMYPITLDVLYQI 116 (481)
T ss_pred cCeEEEEEecCCcccccCCCCc----c--------c-----------------CCCCCceEEEEEcCCCCCCCHHHHHHH
Confidence 5789999999998876533211 0 0 013467899999999899999999999
Q ss_pred HhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEeeeCCCCceecCCCCCccCCCCCCC
Q 024708 82 FSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTLPSTP 160 (264)
Q Consensus 82 Fs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~fSK~~~l~vk~n~~ksrDYT~p~lp 160 (264)
|+.||.|++|+|+++++.++|||||+|.++|.+|++.|||..|+++ ||+|+|+|||...|+|++|++++||||+|.|+
T Consensus 117 F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~-~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~ 194 (481)
T TIGR01649 117 FNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNG-CCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLP 194 (481)
T ss_pred HhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCC-ceEEEEEEecCCCceeEecccCCCCCcCCCCC
Confidence 9999999999998876545799999999999999999999999998 89999999999999999999999999999997
No 6
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.91 E-value=8.8e-24 Score=206.63 Aligned_cols=138 Identities=30% Similarity=0.456 Sum_probs=108.2
Q ss_pred CCeEEEEeecCCCcceeecCCCCCCCCCCCCCCCCcc--ccc---------------------ccCCc-----------c
Q 024708 2 GPCTLRITYSAHTDLSVKFQSHRSRDYTNPYLPVAPS--AID---------------------ASGQL-----------S 47 (264)
Q Consensus 2 gCCtL~I~ySk~~~L~Vk~nn~~srDYTnp~Lp~~~~--al~---------------------~~g~~-----------~ 47 (264)
|||+|+|+|||++.|+|++|++++||||+|+|+ ++. ++. |.+.. .
T Consensus 162 ~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 240 (481)
T TIGR01649 162 GCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLP-GRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDR 240 (481)
T ss_pred CceEEEEEEecCCCceeEecccCCCCCcCCCCC-CCCCCCcCccccccccccccCCCccCCCcccccCCCCCCccccccc
Confidence 699999999999999999999999999999997 211 110 00000 0
Q ss_pred cc-----------------------CCCCCCCCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEE
Q 024708 48 VG-----------------------LDGKKLEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALI 104 (264)
Q Consensus 48 ~~-----------------------~~G~~~~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfV 104 (264)
++ ..+....+++++|+|.|++. +.+|+++|++||+.||+|.+|+++..+++ .|||
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~-~~vt~~~L~~lF~~yG~V~~vki~~~~~g-~afV 318 (481)
T TIGR01649 241 MGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQ-EKVNCDRLFNLFCVYGNVERVKFMKNKKE-TALI 318 (481)
T ss_pred CCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCC-CCCCHHHHHHHHHhcCCeEEEEEEeCCCC-EEEE
Confidence 00 00001135778999998863 36999999999999999999998654434 6999
Q ss_pred EeCCHHHHHHHHHHhcCCeeCCCccceEEEEeeeCCCCcee
Q 024708 105 QYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIK 145 (264)
Q Consensus 105 qF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~fSK~~~l~vk 145 (264)
+|++.++|+.|+++|||..|+|+ .|+|++||.+.+...
T Consensus 319 ~f~~~~~A~~Ai~~lng~~l~g~---~l~v~~s~~~~~~~~ 356 (481)
T TIGR01649 319 EMADPYQAQLALTHLNGVKLFGK---PLRVCPSKQQNVQPP 356 (481)
T ss_pred EECCHHHHHHHHHHhCCCEECCc---eEEEEEcccccccCC
Confidence 99999999999999999999998 999999999876543
No 7
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.49 E-value=1.5e-13 Score=96.50 Aligned_cols=56 Identities=36% Similarity=0.545 Sum_probs=50.9
Q ss_pred HHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEee
Q 024708 78 LHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 137 (264)
Q Consensus 78 L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~fS 137 (264)
|+++|++||+|++|++++++ ..+|||+|++.++|+.|++.|||..+.|+ +|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~---~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGR---PLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTE---EEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCc---EEEEEEC
Confidence 78999999999999998776 24799999999999999999999999998 9999997
No 8
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.40 E-value=1.6e-12 Score=109.29 Aligned_cols=77 Identities=17% Similarity=0.283 Sum_probs=66.6
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEE-cC----CCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccce
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF-DK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 131 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif-~K----~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~ 131 (264)
..++.|+|.+++ +.+|+++|.++|++||.|.+|+|. ++ .++ .|||+|++.++|+.|++.|||..|.++ .
T Consensus 32 ~~~~~lfVgnL~--~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG-faFV~F~~~e~A~~Al~~lng~~i~Gr---~ 105 (144)
T PLN03134 32 LMSTKLFIGGLS--WGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRG-FGFVNFNDEGAATAAISEMDGKELNGR---H 105 (144)
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcce-EEEEEECCHHHHHHHHHHcCCCEECCE---E
Confidence 346789999776 589999999999999999999874 32 234 699999999999999999999999998 9
Q ss_pred EEEEeeeC
Q 024708 132 LHISYSRH 139 (264)
Q Consensus 132 LrV~fSK~ 139 (264)
|+|++++.
T Consensus 106 l~V~~a~~ 113 (144)
T PLN03134 106 IRVNPAND 113 (144)
T ss_pred EEEEeCCc
Confidence 99999864
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.37 E-value=2.6e-12 Score=119.01 Aligned_cols=76 Identities=18% Similarity=0.301 Sum_probs=66.0
Q ss_pred CcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEE
Q 024708 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 133 (264)
Q Consensus 59 s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~-----~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~Lr 133 (264)
+.+|+|.||+ +.+|+++|.++|++||.|++|+|.... +| .|||+|++.++|..|++.|||..|.|+ .|+
T Consensus 269 ~~~lfV~NL~--~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG-~aFV~F~~~~~A~~Ai~~lnG~~~~gr---~i~ 342 (352)
T TIGR01661 269 GYCIFVYNLS--PDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKG-YGFVSMTNYDEAAMAILSLNGYTLGNR---VLQ 342 (352)
T ss_pred CcEEEEeCCC--CCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccc-eEEEEECCHHHHHHHHHHhCCCEECCe---EEE
Confidence 4479998765 689999999999999999999975432 34 599999999999999999999999998 999
Q ss_pred EEeeeCC
Q 024708 134 ISYSRHT 140 (264)
Q Consensus 134 V~fSK~~ 140 (264)
|+|....
T Consensus 343 V~~~~~~ 349 (352)
T TIGR01661 343 VSFKTNK 349 (352)
T ss_pred EEEccCC
Confidence 9997543
No 10
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=3.2e-12 Score=103.13 Aligned_cols=81 Identities=20% Similarity=0.290 Sum_probs=69.2
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEc-CCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD-KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 135 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~-K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~ 135 (264)
..+++|+|.|++ +.||.|+.++||++||.|..|+|-. |...+.|||.|+|+.+|.+|+++|+|..+.+. -|.|-
T Consensus 16 evnriLyirNLp--~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~r---yl~vl 90 (124)
T KOG0114|consen 16 EVNRILYIRNLP--FKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNR---YLVVL 90 (124)
T ss_pred hhheeEEEecCC--ccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCc---eEEEE
Confidence 457899999664 7999999999999999999999843 33234799999999999999999999999998 88888
Q ss_pred eeeCCCC
Q 024708 136 YSRHTDL 142 (264)
Q Consensus 136 fSK~~~l 142 (264)
|-...+.
T Consensus 91 yyq~~~~ 97 (124)
T KOG0114|consen 91 YYQPEDA 97 (124)
T ss_pred ecCHHHH
Confidence 8765543
No 11
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.30 E-value=1.2e-11 Score=87.99 Aligned_cols=67 Identities=25% Similarity=0.314 Sum_probs=56.7
Q ss_pred EEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcC-C--CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEE
Q 024708 62 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-N--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 133 (264)
Q Consensus 62 L~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K-~--~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~Lr 133 (264)
|+|.|++ ..+|+++|.++|+.||.|..+++..+ + ....|||+|++.++|+.|++.|||..+.+. +||
T Consensus 1 l~v~nlp--~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~---~ir 70 (70)
T PF00076_consen 1 LYVGNLP--PDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGR---KIR 70 (70)
T ss_dssp EEEESET--TTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE---EEE
T ss_pred cEEcCCC--CcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECcc---CcC
Confidence 5677665 69999999999999999999998653 1 124799999999999999999999999887 554
No 12
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=6.8e-12 Score=109.04 Aligned_cols=78 Identities=19% Similarity=0.269 Sum_probs=66.5
Q ss_pred CcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEeee
Q 024708 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 138 (264)
Q Consensus 59 s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~fSK 138 (264)
++-|+|.|| ...+|+.+|..+|++||.|..|.|-....+ .|||||+|+.+|+.|+..|||..|+|. .|+|++|+
T Consensus 10 ~~kVYVGnL--~~~a~k~eLE~~F~~yG~lrsvWvArnPPG-fAFVEFed~RDA~DAvr~LDG~~~cG~---r~rVE~S~ 83 (195)
T KOG0107|consen 10 NTKVYVGNL--GSRATKRELERAFSKYGPLRSVWVARNPPG-FAFVEFEDPRDAEDAVRYLDGKDICGS---RIRVELST 83 (195)
T ss_pred CceEEeccC--CCCcchHHHHHHHHhcCcceeEEEeecCCC-ceEEeccCcccHHHHHhhcCCccccCc---eEEEEeec
Confidence 456666655 469999999999999999999998554435 599999999999999999999999997 99999997
Q ss_pred CCCC
Q 024708 139 HTDL 142 (264)
Q Consensus 139 ~~~l 142 (264)
-..-
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 6543
No 13
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=9e-11 Score=113.67 Aligned_cols=78 Identities=18% Similarity=0.302 Sum_probs=68.8
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEee
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 137 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~fS 137 (264)
.-+||+|.||. ..+|+|.|..+|+.||.|+|||..+ . +|||.|.+.++|.+||+.|||..|.|. .|.|.++
T Consensus 258 ~VKvLYVRNL~--~~tTeE~lk~~F~~~G~veRVkk~r-D---YaFVHf~eR~davkAm~~~ngkeldG~---~iEvtLA 328 (506)
T KOG0117|consen 258 KVKVLYVRNLM--ESTTEETLKKLFNEFGKVERVKKPR-D---YAFVHFAEREDAVKAMKETNGKELDGS---PIEVTLA 328 (506)
T ss_pred heeeeeeeccc--hhhhHHHHHHHHHhccceEEeeccc-c---eeEEeecchHHHHHHHHHhcCceecCc---eEEEEec
Confidence 34788888665 5999999999999999999999763 2 799999999999999999999999998 8999999
Q ss_pred eCCCCce
Q 024708 138 RHTDLSI 144 (264)
Q Consensus 138 K~~~l~v 144 (264)
|+.+-+-
T Consensus 329 KP~~k~k 335 (506)
T KOG0117|consen 329 KPVDKKK 335 (506)
T ss_pred CChhhhc
Confidence 9976543
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.27 E-value=1.1e-10 Score=115.80 Aligned_cols=80 Identities=14% Similarity=0.167 Sum_probs=67.3
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC---CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEE
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 134 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~---~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV 134 (264)
.+..|+|.|++ +.+|+++|+++|+.||.|.+|+++... ....|||+|++.++|.+|++.|||..|.|+ .|+|
T Consensus 284 ~~~~l~V~nl~--~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk---~l~V 358 (562)
T TIGR01628 284 QGVNLYVKNLD--DTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGK---PLYV 358 (562)
T ss_pred CCCEEEEeCCC--CccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCc---eeEE
Confidence 34568887654 699999999999999999999975432 123699999999999999999999999998 9999
Q ss_pred EeeeCCCC
Q 024708 135 SYSRHTDL 142 (264)
Q Consensus 135 ~fSK~~~l 142 (264)
.+++....
T Consensus 359 ~~a~~k~~ 366 (562)
T TIGR01628 359 ALAQRKEQ 366 (562)
T ss_pred EeccCcHH
Confidence 99976543
No 15
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.27 E-value=2.1e-11 Score=113.03 Aligned_cols=78 Identities=17% Similarity=0.284 Sum_probs=66.8
Q ss_pred CcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEc-CCC---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEE
Q 024708 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD-KNG---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 134 (264)
Q Consensus 59 s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~-K~~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV 134 (264)
...|+|.+|+ +.+|+++|+++|+.||.|.+|+|.. +.. ..+|||+|.+.++|+.|++.|||..|.++ +|+|
T Consensus 3 ~~~l~V~nLp--~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~---~i~v 77 (352)
T TIGR01661 3 KTNLIVNYLP--QTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNK---TIKV 77 (352)
T ss_pred CcEEEEeCCC--CCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCe---eEEE
Confidence 4578888664 6999999999999999999999753 321 13699999999999999999999999998 9999
Q ss_pred EeeeCCC
Q 024708 135 SYSRHTD 141 (264)
Q Consensus 135 ~fSK~~~ 141 (264)
+|++...
T Consensus 78 ~~a~~~~ 84 (352)
T TIGR01661 78 SYARPSS 84 (352)
T ss_pred Eeecccc
Confidence 9997653
No 16
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.27 E-value=1.8e-11 Score=116.35 Aligned_cols=79 Identities=19% Similarity=0.318 Sum_probs=68.2
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcC-C----CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccc
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-N----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 130 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K-~----~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c 130 (264)
....+.|+|.+|. +++|+++|+++|+.||.|++|+|... + ++ +|||+|.|.++|+.|++.|||..|.++
T Consensus 104 ~~~~~~LfVgnLp--~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srG-yaFVeF~~~e~A~~Ai~~LnG~~l~gr--- 177 (346)
T TIGR01659 104 NNSGTNLIVNYLP--QDMTDRELYALFRTIGPINTCRIMRDYKTGYSFG-YAFVDFGSEADSQRAIKNLNGITVRNK--- 177 (346)
T ss_pred CCCCcEEEEeCCC--CCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCc-EEEEEEccHHHHHHHHHHcCCCccCCc---
Confidence 3566899999765 69999999999999999999997532 2 23 699999999999999999999999998
Q ss_pred eEEEEeeeCC
Q 024708 131 KLHISYSRHT 140 (264)
Q Consensus 131 ~LrV~fSK~~ 140 (264)
+|+|+|++..
T Consensus 178 ~i~V~~a~p~ 187 (346)
T TIGR01659 178 RLKVSYARPG 187 (346)
T ss_pred eeeeeccccc
Confidence 9999998753
No 17
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=1.2e-10 Score=107.04 Aligned_cols=81 Identities=21% Similarity=0.388 Sum_probs=71.8
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEE
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 135 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~ 135 (264)
.+.|+.++|.++.. -+|+|+|++.|+.||.|.+|++|+.+ + +|||.|++.|+|.+||.++||..|.|. .+|+.
T Consensus 161 sp~NtsVY~G~I~~--~lte~~mr~~Fs~fG~I~EVRvFk~q-G-YaFVrF~tkEaAahAIv~mNntei~G~---~VkCs 233 (321)
T KOG0148|consen 161 SPDNTSVYVGNIAS--GLTEDLMRQTFSPFGPIQEVRVFKDQ-G-YAFVRFETKEAAAHAIVQMNNTEIGGQ---LVRCS 233 (321)
T ss_pred CCCCceEEeCCcCc--cccHHHHHHhcccCCcceEEEEeccc-c-eEEEEecchhhHHHHHHHhcCceeCce---EEEEe
Confidence 36678888887653 69999999999999999999999765 4 799999999999999999999999998 99999
Q ss_pred eeeCCCCc
Q 024708 136 YSRHTDLS 143 (264)
Q Consensus 136 fSK~~~l~ 143 (264)
|-|....-
T Consensus 234 WGKe~~~~ 241 (321)
T KOG0148|consen 234 WGKEGDDG 241 (321)
T ss_pred ccccCCCC
Confidence 99887644
No 18
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=4e-11 Score=108.79 Aligned_cols=78 Identities=21% Similarity=0.346 Sum_probs=68.6
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEE-cCC----CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccce
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF-DKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 131 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif-~K~----~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~ 131 (264)
..+..|.|+||+ +++++++|.+||-+||.|.||.+. +|+ +|| |||.|.+.++|++||+.|||.-++.- .
T Consensus 187 ~D~~tvRvtNLs--ed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGF-AFVtF~sRddA~rAI~~LnG~gyd~L---I 260 (270)
T KOG0122|consen 187 DDEATVRVTNLS--EDMREDDLEELFRPFGPITRVYLARDKETGLSKGF-AFVTFESRDDAARAIADLNGYGYDNL---I 260 (270)
T ss_pred CccceeEEecCc--cccChhHHHHHhhccCccceeEEEEccccCcccce-EEEEEecHHHHHHHHHHccCcccceE---E
Confidence 356789999776 599999999999999999999864 443 355 99999999999999999999998887 9
Q ss_pred EEEEeeeCC
Q 024708 132 LHISYSRHT 140 (264)
Q Consensus 132 LrV~fSK~~ 140 (264)
|+|+|||++
T Consensus 261 LrvEwskP~ 269 (270)
T KOG0122|consen 261 LRVEWSKPS 269 (270)
T ss_pred EEEEecCCC
Confidence 999999986
No 19
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.20 E-value=3.8e-11 Score=107.45 Aligned_cols=85 Identities=25% Similarity=0.359 Sum_probs=73.0
Q ss_pred CCCcEEEEEEccCCcccCHHHHHH----HHhccCCeeEEEEEcCCC-CceEEEEeCCHHHHHHHHHHhcCCeeCCCccce
Q 024708 57 PESNVLLASIENMQYAVTLDVLHM----VFSAFGPVQKIAMFDKNG-GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 131 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~----LFs~yG~V~rIkif~K~~-g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~ 131 (264)
.++.+|+|.|+| +.|..++|.. |||.||.|.+|+.++..+ .++|||.|.+.+.|..|+.+|+|..+||+ .
T Consensus 7 ~pn~TlYInnLn--ekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK---~ 81 (221)
T KOG4206|consen 7 NPNGTLYINNLN--EKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGK---P 81 (221)
T ss_pred CCCceEeehhcc--ccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCc---h
Confidence 456699999888 5899988776 999999999999875321 24899999999999999999999999999 9
Q ss_pred EEEEeeeCCCCceec
Q 024708 132 LHISYSRHTDLSIKV 146 (264)
Q Consensus 132 LrV~fSK~~~l~vk~ 146 (264)
|+|.|||..+-.+.+
T Consensus 82 mriqyA~s~sdii~~ 96 (221)
T KOG4206|consen 82 MRIQYAKSDSDIIAQ 96 (221)
T ss_pred hheecccCccchhhc
Confidence 999999998755544
No 20
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.16 E-value=1.9e-09 Score=109.97 Aligned_cols=77 Identities=25% Similarity=0.250 Sum_probs=68.5
Q ss_pred CcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEeee
Q 024708 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 138 (264)
Q Consensus 59 s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~fSK 138 (264)
|++|||..+. ..|++.+|.++|+.||.|++|++....+ ||||.|....+|.+|+..|++.++.++ +|+|.|+.
T Consensus 421 SrTLwvG~i~--k~v~e~dL~~~feefGeiqSi~li~~R~--cAfI~M~~RqdA~kalqkl~n~kv~~k---~Iki~Wa~ 493 (894)
T KOG0132|consen 421 SRTLWVGGIP--KNVTEQDLANLFEEFGEIQSIILIPPRG--CAFIKMVRRQDAEKALQKLSNVKVADK---TIKIAWAV 493 (894)
T ss_pred eeeeeecccc--chhhHHHHHHHHHhcccceeEeeccCCc--eeEEEEeehhHHHHHHHHHhcccccce---eeEEeeec
Confidence 6899999776 5999999999999999999999765443 999999999999999999999999998 99999986
Q ss_pred CCCC
Q 024708 139 HTDL 142 (264)
Q Consensus 139 ~~~l 142 (264)
..-+
T Consensus 494 g~G~ 497 (894)
T KOG0132|consen 494 GKGP 497 (894)
T ss_pred cCCc
Confidence 5543
No 21
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=8.8e-11 Score=97.97 Aligned_cols=76 Identities=18% Similarity=0.252 Sum_probs=65.3
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEE-EcCC---CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAM-FDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIki-f~K~---~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
..|++|+|.|+. +.+||+.|++||++.|+|.||+| ++|. .-..+||+|.+.++|..|+..|+|..+.++ +|
T Consensus 34 r~S~tvyVgNlS--fyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr---~i 108 (153)
T KOG0121|consen 34 RKSCTVYVGNLS--FYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDR---PI 108 (153)
T ss_pred hhcceEEEeeee--eeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccccc---ce
Confidence 457899999665 79999999999999999999997 3433 212499999999999999999999999999 99
Q ss_pred EEEee
Q 024708 133 HISYS 137 (264)
Q Consensus 133 rV~fS 137 (264)
+|+|-
T Consensus 109 r~D~D 113 (153)
T KOG0121|consen 109 RIDWD 113 (153)
T ss_pred eeecc
Confidence 99873
No 22
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.12 E-value=2.5e-10 Score=108.65 Aligned_cols=79 Identities=16% Similarity=0.197 Sum_probs=65.2
Q ss_pred CcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC-C---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEE
Q 024708 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-G---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 134 (264)
Q Consensus 59 s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~-~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV 134 (264)
...|+|.+|. +.+|+++|.++|++||.|++|+|..++ . ...|||+|++.++|++|++.||+..|.+. ...|+|
T Consensus 193 ~~~lfV~nLp--~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~-~~~l~V 269 (346)
T TIGR01659 193 DTNLYVTNLP--RTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGG-SQPLTV 269 (346)
T ss_pred cceeEEeCCC--CcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCC-ceeEEE
Confidence 4568888664 699999999999999999999976432 1 13699999999999999999999998775 347889
Q ss_pred EeeeCC
Q 024708 135 SYSRHT 140 (264)
Q Consensus 135 ~fSK~~ 140 (264)
.+++..
T Consensus 270 ~~a~~~ 275 (346)
T TIGR01659 270 RLAEEH 275 (346)
T ss_pred EECCcc
Confidence 888754
No 23
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.11 E-value=2.6e-10 Score=114.95 Aligned_cols=75 Identities=20% Similarity=0.389 Sum_probs=67.1
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhcc--CCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEE
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAF--GPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 135 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~y--G~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~ 135 (264)
..++|+|.|+. +.+|+++|+++|+.| |.|++|++.+ + .|||+|++.++|++|++.|||..|.++ .|+|+
T Consensus 232 ~~k~LfVgNL~--~~~tee~L~~~F~~f~~G~I~rV~~~r---g-fAFVeF~s~e~A~kAi~~lnG~~i~Gr---~I~V~ 302 (578)
T TIGR01648 232 KVKILYVRNLM--TTTTEEIIEKSFSEFKPGKVERVKKIR---D-YAFVHFEDREDAVKAMDELNGKELEGS---EIEVT 302 (578)
T ss_pred cccEEEEeCCC--CCCCHHHHHHHHHhcCCCceEEEEeec---C-eEEEEeCCHHHHHHHHHHhCCCEECCE---EEEEE
Confidence 35789999665 699999999999999 9999998763 2 699999999999999999999999998 99999
Q ss_pred eeeCCC
Q 024708 136 YSRHTD 141 (264)
Q Consensus 136 fSK~~~ 141 (264)
|++..+
T Consensus 303 ~Akp~~ 308 (578)
T TIGR01648 303 LAKPVD 308 (578)
T ss_pred EccCCC
Confidence 998764
No 24
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=1.9e-10 Score=96.87 Aligned_cols=76 Identities=21% Similarity=0.395 Sum_probs=66.2
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEE-EcCCCC---ceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEE
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAM-FDKNGG---LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 133 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIki-f~K~~g---~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~Lr 133 (264)
...||+|++.. +..|++++++.|+.||.|+.|.+ ++++.| .+|||||++.++|+.|++.|||..|.+. .|.
T Consensus 71 EGwIi~VtgvH--eEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q---~v~ 145 (170)
T KOG0130|consen 71 EGWIIFVTGVH--EEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQ---NVS 145 (170)
T ss_pred eeEEEEEeccC--cchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCC---cee
Confidence 45799999887 48999999999999999999986 444322 3799999999999999999999999999 889
Q ss_pred EEeee
Q 024708 134 ISYSR 138 (264)
Q Consensus 134 V~fSK 138 (264)
|+|.-
T Consensus 146 VDw~F 150 (170)
T KOG0130|consen 146 VDWCF 150 (170)
T ss_pred EEEEE
Confidence 98763
No 25
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.09 E-value=4.6e-10 Score=81.12 Aligned_cols=64 Identities=27% Similarity=0.320 Sum_probs=52.8
Q ss_pred EEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCC---CceEEEEeCCHHHHHHHHHHhcCCeeCCC
Q 024708 62 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG---GLQALIQYPDVQTAVVAKEALEGHCIYDG 127 (264)
Q Consensus 62 L~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~ 127 (264)
|+|++++ ..+|+++|.++|+.||.|.+|++...+. ...|||+|.+.++|..|++.++|..|.|+
T Consensus 1 v~i~nlp--~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~ 67 (70)
T PF14259_consen 1 VYISNLP--PSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGR 67 (70)
T ss_dssp EEEESST--TT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CEEeCCC--CCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCE
Confidence 5667554 6899999999999999999999765421 24799999999999999999999999887
No 26
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.08 E-value=6.5e-10 Score=102.09 Aligned_cols=74 Identities=23% Similarity=0.219 Sum_probs=62.9
Q ss_pred CcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC-CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEee
Q 024708 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 137 (264)
Q Consensus 59 s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~-~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~fS 137 (264)
.+.|+|.|++ +.+|+++|+++|+.||.|++|.|...+ ....|||+|.+.++|+.|+. |||..|.++ .|+|+.+
T Consensus 4 ~rtVfVgNLs--~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr---~V~Vt~a 77 (260)
T PLN03120 4 VRTVKVSNVS--LKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQ---SVTITPA 77 (260)
T ss_pred CCEEEEeCCC--CCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCc---eEEEEec
Confidence 4678888766 589999999999999999999975432 22369999999999999995 999999999 8899875
Q ss_pred e
Q 024708 138 R 138 (264)
Q Consensus 138 K 138 (264)
.
T Consensus 78 ~ 78 (260)
T PLN03120 78 E 78 (260)
T ss_pred c
Confidence 4
No 27
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=8.1e-11 Score=105.88 Aligned_cols=81 Identities=17% Similarity=0.382 Sum_probs=71.4
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEE-----cCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccce
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF-----DKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 131 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif-----~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~ 131 (264)
..-++|+|..+- +.||+..|+..|-.||+|..|+|- .|.++| |||+|+..|+|..||++||+..|||+ +
T Consensus 8 ~~KrtlYVGGla--deVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgF-gFVefe~aEDAaaAiDNMnesEL~Gr---t 81 (298)
T KOG0111|consen 8 NQKRTLYVGGLA--DEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGF-GFVEFEEAEDAAAAIDNMNESELFGR---T 81 (298)
T ss_pred ccceeEEeccch--HHHHHHHHHhccccccchhhcccccchhcccccce-eEEEeeccchhHHHhhcCchhhhcce---e
Confidence 345799999775 699999999999999999999972 244565 99999999999999999999999999 9
Q ss_pred EEEEeeeCCCCc
Q 024708 132 LHISYSRHTDLS 143 (264)
Q Consensus 132 LrV~fSK~~~l~ 143 (264)
|||+|+|+.++.
T Consensus 82 irVN~AkP~kik 93 (298)
T KOG0111|consen 82 IRVNLAKPEKIK 93 (298)
T ss_pred EEEeecCCcccc
Confidence 999999998764
No 28
>smart00362 RRM_2 RNA recognition motif.
Probab=99.06 E-value=1.4e-09 Score=75.67 Aligned_cols=68 Identities=25% Similarity=0.331 Sum_probs=56.7
Q ss_pred EEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC--CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEE
Q 024708 62 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 134 (264)
Q Consensus 62 L~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~--~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV 134 (264)
|+|.++ +..++.++|.++|+.||.|.+|++.... ....|||+|.+.++|+.|++.|+|..+.++ .|+|
T Consensus 2 v~i~~l--~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~---~i~v 71 (72)
T smart00362 2 LFVGNL--PPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGR---PLRV 71 (72)
T ss_pred EEEcCC--CCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCE---EEee
Confidence 556655 4689999999999999999999976543 113799999999999999999999999876 6665
No 29
>smart00360 RRM RNA recognition motif.
Probab=99.05 E-value=1.1e-09 Score=75.81 Aligned_cols=64 Identities=25% Similarity=0.371 Sum_probs=54.4
Q ss_pred cCCcccCHHHHHHHHhccCCeeEEEEEcCCC----CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEE
Q 024708 68 NMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG----GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 134 (264)
Q Consensus 68 N~~~~VT~d~L~~LFs~yG~V~rIkif~K~~----g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV 134 (264)
|++..+++++|.++|+.||.|.+|++..... ...|||+|.+.++|..|++.|+|..+.++ .|+|
T Consensus 3 ~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~---~~~v 70 (71)
T smart00360 3 NLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGR---PLKV 70 (71)
T ss_pred CCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCc---EEEe
Confidence 3446899999999999999999999765431 23799999999999999999999999887 7766
No 30
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.04 E-value=1.5e-10 Score=111.92 Aligned_cols=128 Identities=16% Similarity=0.178 Sum_probs=94.2
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC---CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 133 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~---~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~Lr 133 (264)
...+.|||..++ ..+||.++++||++||.|+++.|++.. ...||||.|++.|.|..||+.|||..-..++...|.
T Consensus 122 ~~e~KLFvg~ls--K~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLV 199 (510)
T KOG0144|consen 122 VEERKLFVGMLS--KQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLV 199 (510)
T ss_pred ccchhhhhhhcc--ccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceE
Confidence 346789999888 489999999999999999999987632 124899999999999999999999888776223799
Q ss_pred EEeeeCCCCceecCCCCCccCCCCC----CCCC--CCCCCCCCCCCCcccCCCcCCCC---CCCCC
Q 024708 134 ISYSRHTDLSIKVNNDRSRDYTLPS----TPMV--NSQPSILGQQPVPMVGATANQYN---GAQFA 190 (264)
Q Consensus 134 V~fSK~~~l~vk~n~~ksrDYT~p~----lp~~--~~qps~~G~~~~~~~~~~~~~~~---~~~~~ 190 (264)
|.|+..++-+- .+.+.-+++. |..+ -..++++|+.+..|.+|.+++-+ .|+||
T Consensus 200 VkFADtqkdk~----~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~ 261 (510)
T KOG0144|consen 200 VKFADTQKDKD----GKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLG 261 (510)
T ss_pred EEecccCCCch----HHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccc
Confidence 99998876432 2222222222 1111 13467788888888888776532 36777
No 31
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.04 E-value=9.9e-10 Score=105.74 Aligned_cols=77 Identities=18% Similarity=0.324 Sum_probs=66.1
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC-C---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEE
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-G---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 133 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~-~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~Lr 133 (264)
.+.+|+|.+++ +.+|+++|.++|+.||.|.+|++.... . ..+|||+|.+.++|..|++.|||..|.++ .|+
T Consensus 185 ~~~~l~v~nl~--~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~---~i~ 259 (457)
T TIGR01622 185 NFLKLYVGNLH--FNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGR---PIK 259 (457)
T ss_pred CCCEEEEcCCC--CCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCE---EEE
Confidence 35789988765 699999999999999999999975321 1 13699999999999999999999999988 999
Q ss_pred EEeeeC
Q 024708 134 ISYSRH 139 (264)
Q Consensus 134 V~fSK~ 139 (264)
|.|++.
T Consensus 260 v~~a~~ 265 (457)
T TIGR01622 260 VGYAQD 265 (457)
T ss_pred EEEccC
Confidence 999873
No 32
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.02 E-value=1.1e-09 Score=108.63 Aligned_cols=73 Identities=19% Similarity=0.196 Sum_probs=63.0
Q ss_pred EEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC----CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEe
Q 024708 61 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 136 (264)
Q Consensus 61 VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~----~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~f 136 (264)
.|+|.+|+ ..+|+++|+++|+.||.|.+|+|.+++ ...+|||+|.+.++|++|++.||+..|.++ .|+|.|
T Consensus 2 sl~VgnLp--~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk---~i~i~~ 76 (562)
T TIGR01628 2 SLYVGDLD--PDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGK---PIRIMW 76 (562)
T ss_pred eEEEeCCC--CCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe---eEEeec
Confidence 47888665 699999999999999999999985422 123799999999999999999999999998 899998
Q ss_pred ee
Q 024708 137 SR 138 (264)
Q Consensus 137 SK 138 (264)
++
T Consensus 77 s~ 78 (562)
T TIGR01628 77 SQ 78 (562)
T ss_pred cc
Confidence 85
No 33
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.00 E-value=1.7e-09 Score=105.37 Aligned_cols=77 Identities=21% Similarity=0.291 Sum_probs=66.3
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcC-----CCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K-----~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
..+.|+|.|++ +.+|+++|.++|+.||.|..|+|+.. ++| .|||+|.+.++|..|++.|||..|+++ .|
T Consensus 294 ~~~~l~v~nlp--~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g-~afv~f~~~~~a~~A~~~l~g~~~~~~---~l 367 (509)
T TIGR01642 294 SKDRIYIGNLP--LYLGEDQIKELLESFGDLKAFNLIKDIATGLSKG-YAFCEYKDPSVTDVAIAALNGKDTGDN---KL 367 (509)
T ss_pred CCCEEEEeCCC--CCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCe-EEEEEECCHHHHHHHHHHcCCCEECCe---EE
Confidence 34688988665 69999999999999999999987532 233 699999999999999999999999998 89
Q ss_pred EEEeeeCC
Q 024708 133 HISYSRHT 140 (264)
Q Consensus 133 rV~fSK~~ 140 (264)
+|.++...
T Consensus 368 ~v~~a~~~ 375 (509)
T TIGR01642 368 HVQRACVG 375 (509)
T ss_pred EEEECccC
Confidence 99998654
No 34
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.00 E-value=4.2e-09 Score=73.57 Aligned_cols=70 Identities=26% Similarity=0.343 Sum_probs=58.7
Q ss_pred EEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCC---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEe
Q 024708 62 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 136 (264)
Q Consensus 62 L~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~f 136 (264)
|+|++++ ..+++++|.++|+.||.|.++.+..... ...|+|+|.+.++|..|++.|++..+.++ +|+|+|
T Consensus 2 i~i~~l~--~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~---~~~v~~ 74 (74)
T cd00590 2 LFVGNLP--PDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGR---PLRVEF 74 (74)
T ss_pred EEEeCCC--CccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCe---EEEEeC
Confidence 5666555 5899999999999999999999764321 23799999999999999999999998887 777764
No 35
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.99 E-value=6.1e-10 Score=99.39 Aligned_cols=75 Identities=24% Similarity=0.436 Sum_probs=64.7
Q ss_pred EEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEc----C-CCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEE
Q 024708 61 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD----K-NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 135 (264)
Q Consensus 61 VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~----K-~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~ 135 (264)
.|.| .|+.|.+|.|+|..+|.+||.|-+|.|-. + ..+| |||.|.+..+|+.|+++|||..|.|+ .|+|+
T Consensus 15 SLkV--dNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgF-aFVrf~~k~daedA~damDG~~ldgR---elrVq 88 (256)
T KOG4207|consen 15 SLKV--DNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGF-AFVRFHDKRDAEDALDAMDGAVLDGR---ELRVQ 88 (256)
T ss_pred eEEe--cceeccCCHHHHHHHHHHhCcccceecccccccccccce-eEEEeeecchHHHHHHhhcceeeccc---eeeeh
Confidence 4555 46668999999999999999999999843 2 2455 99999999999999999999999999 99999
Q ss_pred eeeCCC
Q 024708 136 YSRHTD 141 (264)
Q Consensus 136 fSK~~~ 141 (264)
++|--.
T Consensus 89 ~arygr 94 (256)
T KOG4207|consen 89 MARYGR 94 (256)
T ss_pred hhhcCC
Confidence 987654
No 36
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.99 E-value=8.6e-10 Score=103.64 Aligned_cols=75 Identities=19% Similarity=0.321 Sum_probs=66.3
Q ss_pred cEEEEEEccCCcccCHHHHHHHHhccCCeeEEE-EEcCC--CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEe
Q 024708 60 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 136 (264)
Q Consensus 60 ~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIk-if~K~--~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~f 136 (264)
+-|+|+|++ ++..+-+|..+|.+||.|++|. ||+.+ ||| +||.|++.++|++|.+.|+|..|.|+ +|+|+-
T Consensus 97 kRLhVSNIP--FrFRdpDL~aMF~kfG~VldVEIIfNERGSKGF-GFVTmen~~dadRARa~LHgt~VEGR---kIEVn~ 170 (376)
T KOG0125|consen 97 KRLHVSNIP--FRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGF-GFVTMENPADADRARAELHGTVVEGR---KIEVNN 170 (376)
T ss_pred ceeEeecCC--ccccCccHHHHHHhhCceeeEEEEeccCCCCcc-ceEEecChhhHHHHHHHhhcceeece---EEEEec
Confidence 679999664 7899999999999999999997 57654 466 99999999999999999999999999 899987
Q ss_pred eeCC
Q 024708 137 SRHT 140 (264)
Q Consensus 137 SK~~ 140 (264)
+..+
T Consensus 171 ATar 174 (376)
T KOG0125|consen 171 ATAR 174 (376)
T ss_pred cchh
Confidence 7554
No 37
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.96 E-value=2.7e-09 Score=108.17 Aligned_cols=76 Identities=17% Similarity=0.214 Sum_probs=65.7
Q ss_pred CcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcC-----CCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEE
Q 024708 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 133 (264)
Q Consensus 59 s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K-----~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~Lr 133 (264)
.+.|+|.+++ ..+++++|+++|+.||.|++++|.+. .+| +|||+|++.++|..|++.|||..|.|+ .|+
T Consensus 204 ~~rLfVgnLp--~~vteedLk~lFs~FG~I~svrl~~D~~tgksKG-fGFVeFe~~e~A~kAI~amNg~elgGr---~Lr 277 (612)
T TIGR01645 204 FNRIYVASVH--PDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKG-YGFIEYNNLQSQSEAIASMNLFDLGGQ---YLR 277 (612)
T ss_pred cceEEeecCC--CCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCC-eEEEEECCHHHHHHHHHHhCCCeeCCe---EEE
Confidence 4678888765 69999999999999999999997532 234 699999999999999999999999999 999
Q ss_pred EEeeeCC
Q 024708 134 ISYSRHT 140 (264)
Q Consensus 134 V~fSK~~ 140 (264)
|.++...
T Consensus 278 V~kAi~p 284 (612)
T TIGR01645 278 VGKCVTP 284 (612)
T ss_pred EEecCCC
Confidence 9987653
No 38
>PLN03213 repressor of silencing 3; Provisional
Probab=98.95 E-value=3.1e-09 Score=104.54 Aligned_cols=78 Identities=18% Similarity=0.274 Sum_probs=65.9
Q ss_pred EEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCH--HHHHHHHHHhcCCeeCCCccceEEEEeeeC
Q 024708 62 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDV--QTAVVAKEALEGHCIYDGGFCKLHISYSRH 139 (264)
Q Consensus 62 L~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~--e~A~~A~~~LnG~~I~g~~~c~LrV~fSK~ 139 (264)
..|++.|+.+.||+++|..+|+.||.|.+|.|.+.++...|||+|.+. .++.+||..|||..+.|+ .|+|+-+|.
T Consensus 11 MRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR---~LKVNKAKP 87 (759)
T PLN03213 11 VRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGG---RLRLEKAKE 87 (759)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCc---eeEEeeccH
Confidence 334444666899999999999999999999987554333599999987 789999999999999999 999999988
Q ss_pred CCC
Q 024708 140 TDL 142 (264)
Q Consensus 140 ~~l 142 (264)
.-|
T Consensus 88 ~YL 90 (759)
T PLN03213 88 HYL 90 (759)
T ss_pred HHH
Confidence 744
No 39
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.94 E-value=7.2e-09 Score=94.27 Aligned_cols=74 Identities=16% Similarity=0.152 Sum_probs=62.2
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC-CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEe
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 136 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~-~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~f 136 (264)
...+|+|.|+. +.+|+++|+++|+.||.|.+|+|.+.+ .+..|||+|.|.++|+.|+ .|||..|.+. .|.|.-
T Consensus 4 ~g~TV~V~NLS--~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~---~I~It~ 77 (243)
T PLN03121 4 GGYTAEVTNLS--PKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQ---RVCITR 77 (243)
T ss_pred CceEEEEecCC--CCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCc---eEEEEe
Confidence 34688888765 599999999999999999999986543 2236999999999999999 7999999998 777764
Q ss_pred e
Q 024708 137 S 137 (264)
Q Consensus 137 S 137 (264)
.
T Consensus 78 ~ 78 (243)
T PLN03121 78 W 78 (243)
T ss_pred C
Confidence 3
No 40
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.92 E-value=3e-09 Score=107.83 Aligned_cols=75 Identities=21% Similarity=0.389 Sum_probs=63.9
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEE-c----CCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF-D----KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif-~----K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
..+.|||.+++ +.+|+++|+++|+.||.|.+|+|. + +++| +|||+|++.++|++|++.|||..|.|+ .|
T Consensus 106 ~~~rLfVGnLp--~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskG-fAFVeF~s~e~A~~Ai~~lnG~~i~GR---~I 179 (612)
T TIGR01645 106 IMCRVYVGSIS--FELREDTIRRAFDPFGPIKSINMSWDPATGKHKG-FAFVEYEVPEAAQLALEQMNGQMLGGR---NI 179 (612)
T ss_pred CCCEEEEcCCC--CCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCC-eEEEEeCcHHHHHHHHHhcCCeEEecc---ee
Confidence 45678888664 799999999999999999999974 3 2334 699999999999999999999999998 88
Q ss_pred EEEeee
Q 024708 133 HISYSR 138 (264)
Q Consensus 133 rV~fSK 138 (264)
+|.+..
T Consensus 180 kV~rp~ 185 (612)
T TIGR01645 180 KVGRPS 185 (612)
T ss_pred eecccc
Confidence 887643
No 41
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.88 E-value=7.6e-09 Score=99.62 Aligned_cols=76 Identities=17% Similarity=0.284 Sum_probs=64.8
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEc-C----CCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD-K----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~-K----~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
..++|+|.+++ +.+|+++|.++|+.||.|..|+|+. + .++ .|||+|.+.++|.+|+. |+|..|.+. .|
T Consensus 88 ~~~~l~V~nlp--~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg-~afVeF~~~e~A~~Al~-l~g~~~~g~---~i 160 (457)
T TIGR01622 88 DDRTVFVLQLA--LKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKG-VAYVEFYDVESVIKALA-LTGQMLLGR---PI 160 (457)
T ss_pred CCcEEEEeCCC--CCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcce-EEEEEECCHHHHHHHHH-hCCCEECCe---ee
Confidence 46789999776 5999999999999999999999753 2 233 69999999999999996 999999998 88
Q ss_pred EEEeeeCC
Q 024708 133 HISYSRHT 140 (264)
Q Consensus 133 rV~fSK~~ 140 (264)
.|.+++..
T Consensus 161 ~v~~~~~~ 168 (457)
T TIGR01622 161 IVQSSQAE 168 (457)
T ss_pred EEeecchh
Confidence 99887543
No 42
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.87 E-value=1.2e-08 Score=86.54 Aligned_cols=74 Identities=27% Similarity=0.479 Sum_probs=64.7
Q ss_pred CcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEE-cC----CCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEE
Q 024708 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF-DK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 133 (264)
Q Consensus 59 s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif-~K----~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~Lr 133 (264)
...|+|.+++ +.+|+++|.++|..||.|.+|.+. ++ .++ .|||+|.+.++|..|++.|+|..|.++ .|+
T Consensus 115 ~~~l~v~nL~--~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g-~~~v~f~~~~~~~~a~~~~~~~~~~~~---~~~ 188 (306)
T COG0724 115 NNTLFVGNLP--YDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRG-FAFVEFESEESAEKAIEELNGKELEGR---PLR 188 (306)
T ss_pred CceEEEeCCC--CCCCHHHHHHHHHhcCceeEEEeeeccccCccCc-eEEEEecCHHHHHHHHHHcCCCeECCc---eeE
Confidence 4889998776 699999999999999999999863 32 234 699999999999999999999999999 899
Q ss_pred EEeee
Q 024708 134 ISYSR 138 (264)
Q Consensus 134 V~fSK 138 (264)
|.++.
T Consensus 189 v~~~~ 193 (306)
T COG0724 189 VQKAQ 193 (306)
T ss_pred eeccc
Confidence 99865
No 43
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.84 E-value=1.4e-08 Score=94.68 Aligned_cols=80 Identities=21% Similarity=0.367 Sum_probs=69.6
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEc-----CCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccce
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD-----KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 131 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~-----K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~ 131 (264)
-+-++|||.-+| |.++|+.|...|++||.|++|.|+. |.+| +|||+|++..+-..|.++.+|.+|.++ .
T Consensus 99 DPy~TLFv~RLn--ydT~EskLrreF~~YG~IkrirlV~d~vTgkskG-YAFIeye~erdm~~AYK~adG~~Idgr---r 172 (335)
T KOG0113|consen 99 DPYKTLFVARLN--YDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKG-YAFIEYEHERDMKAAYKDADGIKIDGR---R 172 (335)
T ss_pred Cccceeeeeecc--ccccHHHHHHHHHhcCcceeEEEeeecccCCccc-eEEEEeccHHHHHHHHHhccCceecCc---E
Confidence 456899999988 6999999999999999999999753 2334 799999999999999999999999999 7
Q ss_pred EEEEeeeCCCC
Q 024708 132 LHISYSRHTDL 142 (264)
Q Consensus 132 LrV~fSK~~~l 142 (264)
|-|++-+...+
T Consensus 173 i~VDvERgRTv 183 (335)
T KOG0113|consen 173 ILVDVERGRTV 183 (335)
T ss_pred EEEEecccccc
Confidence 88888766554
No 44
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.83 E-value=1.1e-08 Score=99.73 Aligned_cols=80 Identities=20% Similarity=0.281 Sum_probs=62.7
Q ss_pred CCCcEEEEEEccCCc--------ccCHHHHHHHHhccCCeeEEEEEcCC-------CCceEEEEeCCHHHHHHHHHHhcC
Q 024708 57 PESNVLLASIENMQY--------AVTLDVLHMVFSAFGPVQKIAMFDKN-------GGLQALIQYPDVQTAVVAKEALEG 121 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~--------~VT~d~L~~LFs~yG~V~rIkif~K~-------~g~~AfVqF~d~e~A~~A~~~LnG 121 (264)
.+++||+|.|+-... ....++|+++|++||.|++|+|.+.+ +.+.|||+|++.++|+.|++.|||
T Consensus 407 ~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnG 486 (509)
T TIGR01642 407 KPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNG 486 (509)
T ss_pred CCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCC
Confidence 467888887653211 12236799999999999999986431 113699999999999999999999
Q ss_pred CeeCCCccceEEEEeeeC
Q 024708 122 HCIYDGGFCKLHISYSRH 139 (264)
Q Consensus 122 ~~I~g~~~c~LrV~fSK~ 139 (264)
..|.|+ +|.|+|...
T Consensus 487 r~~~gr---~v~~~~~~~ 501 (509)
T TIGR01642 487 RKFNDR---VVVAAFYGE 501 (509)
T ss_pred CEECCe---EEEEEEeCH
Confidence 999998 999998654
No 45
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=9.3e-09 Score=97.80 Aligned_cols=82 Identities=23% Similarity=0.415 Sum_probs=70.3
Q ss_pred CCCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEc-CCCC---ceEEEEeCCHHHHHHHHHHhcCCeeCCCccc
Q 024708 55 LEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD-KNGG---LQALIQYPDVQTAVVAKEALEGHCIYDGGFC 130 (264)
Q Consensus 55 ~~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~-K~~g---~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c 130 (264)
..+|-+||||..||+ -+|.++|..|||.||.|....+++ ++.| .+|||||++.++.+.|.-.|++.-|.++
T Consensus 235 ~~PPeNVLFVCKLNP--VTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDr--- 309 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNP--VTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDR--- 309 (479)
T ss_pred cCCCcceEEEEecCC--cccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccc---
Confidence 457889999999996 566678999999999999997654 3322 3799999999999999999999999999
Q ss_pred eEEEEeeeCCC
Q 024708 131 KLHISYSRHTD 141 (264)
Q Consensus 131 ~LrV~fSK~~~ 141 (264)
.|+|+||..-+
T Consensus 310 RIHVDFSQSVs 320 (479)
T KOG0415|consen 310 RIHVDFSQSVS 320 (479)
T ss_pred eEEeehhhhhh
Confidence 99999997654
No 46
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.79 E-value=8.6e-09 Score=95.83 Aligned_cols=71 Identities=20% Similarity=0.243 Sum_probs=64.3
Q ss_pred EEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEeeeCC
Q 024708 61 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 140 (264)
Q Consensus 61 VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~fSK~~ 140 (264)
.|||.|+ +.++++.+|+.||.+||+|++..|+ || ++||.++|..+|+.||++|+|.+|.|. .|+|+-||.+
T Consensus 4 KLFIGNL--p~~~~~~elr~lFe~ygkVlECDIv-KN---YgFVHiEdktaaedairNLhgYtLhg~---nInVeaSksK 74 (346)
T KOG0109|consen 4 KLFIGNL--PREATEQELRSLFEQYGKVLECDIV-KN---YGFVHIEDKTAAEDAIRNLHGYTLHGV---NINVEASKSK 74 (346)
T ss_pred chhccCC--CcccchHHHHHHHHhhCceEeeeee-cc---cceEEeecccccHHHHhhcccceecce---EEEEEecccc
Confidence 4777755 4799999999999999999999987 45 799999999999999999999999998 9999999876
No 47
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.79 E-value=8.8e-09 Score=90.83 Aligned_cols=78 Identities=17% Similarity=0.276 Sum_probs=65.4
Q ss_pred CcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCC-CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEee
Q 024708 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG-GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 137 (264)
Q Consensus 59 s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~-g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~fS 137 (264)
++.|+|.||+ -+|.+.+|.+||.+||.|..|.+..+.+ ...|||||+|+.+|+.||..-||.++.+ |.|+|+|.
T Consensus 6 ~~~iyvGNLP--~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg---~rLRVEfp 80 (241)
T KOG0105|consen 6 SRRIYVGNLP--GDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDG---CRLRVEFP 80 (241)
T ss_pred cceEEecCCC--cchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCc---ceEEEEec
Confidence 4567777665 5899999999999999999998855443 2359999999999999999999999665 69999998
Q ss_pred eCCC
Q 024708 138 RHTD 141 (264)
Q Consensus 138 K~~~ 141 (264)
+.-.
T Consensus 81 rggr 84 (241)
T KOG0105|consen 81 RGGR 84 (241)
T ss_pred cCCC
Confidence 7654
No 48
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.78 E-value=1.5e-08 Score=102.32 Aligned_cols=65 Identities=18% Similarity=0.203 Sum_probs=56.0
Q ss_pred CcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEc----CCCCceEEEEeCCHHHHHHHHHHhcCCeeCC
Q 024708 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD----KNGGLQALIQYPDVQTAVVAKEALEGHCIYD 126 (264)
Q Consensus 59 s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~----K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g 126 (264)
.+.|||.+|+ .++|+++|+++|+.||.|.+|+|.. ++++ .|||+|.+.++|++|++.|||..|..
T Consensus 58 ~~~lFVgnLp--~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRG-faFV~F~~~e~A~~Ai~~lng~~i~~ 126 (578)
T TIGR01648 58 GCEVFVGKIP--RDLYEDELVPLFEKAGPIYELRLMMDFSGQNRG-YAFVTFCGKEEAKEAVKLLNNYEIRP 126 (578)
T ss_pred CCEEEeCCCC--CCCCHHHHHHHHHhhCCEEEEEEEECCCCCccc-eEEEEeCCHHHHHHHHHHcCCCeecC
Confidence 4789998665 6999999999999999999999643 2334 59999999999999999999999863
No 49
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.77 E-value=3.1e-08 Score=91.26 Aligned_cols=75 Identities=19% Similarity=0.316 Sum_probs=65.2
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcC---C--CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK---N--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K---~--~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
....|||+|+.+ +.+|..|.++|+.||.|..||+++. + +| .+||.|.+-++|..||..|||..+.++ .|
T Consensus 277 ~g~ciFvYNLsp--d~de~~LWQlFgpFGAv~nVKvirD~ttnkCKG-fgFVtMtNYdEAamAi~sLNGy~lg~r---vL 350 (360)
T KOG0145|consen 277 GGWCIFVYNLSP--DADESILWQLFGPFGAVTNVKVIRDFTTNKCKG-FGFVTMTNYDEAAMAIASLNGYRLGDR---VL 350 (360)
T ss_pred CeeEEEEEecCC--CchHhHHHHHhCcccceeeEEEEecCCcccccc-eeEEEecchHHHHHHHHHhcCccccce---EE
Confidence 357999998764 8899999999999999999997532 2 45 499999999999999999999999999 99
Q ss_pred EEEeee
Q 024708 133 HISYSR 138 (264)
Q Consensus 133 rV~fSK 138 (264)
.|+|-.
T Consensus 351 QVsFKt 356 (360)
T KOG0145|consen 351 QVSFKT 356 (360)
T ss_pred EEEEec
Confidence 999853
No 50
>smart00361 RRM_1 RNA recognition motif.
Probab=98.76 E-value=3.1e-08 Score=72.92 Aligned_cols=56 Identities=25% Similarity=0.333 Sum_probs=46.8
Q ss_pred HHHHHHHHh----ccCCeeEEE--EEcC------CCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEE
Q 024708 75 LDVLHMVFS----AFGPVQKIA--MFDK------NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 134 (264)
Q Consensus 75 ~d~L~~LFs----~yG~V~rIk--if~K------~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV 134 (264)
+++|++.|+ .||.|.+|. ++++ .+| .|||+|.+.++|..|++.|||..+.++ .|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG-~~fV~f~~~~dA~~A~~~l~g~~~~gr---~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRG-NVYITFERSEDAARAIVDLNGRYFDGR---TVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcE-EEEEEECCHHHHHHHHHHhCCCEECCE---EEEe
Confidence 578888888 999999995 3433 234 599999999999999999999999998 7765
No 51
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.74 E-value=1.4e-09 Score=95.44 Aligned_cols=74 Identities=23% Similarity=0.455 Sum_probs=62.6
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEc-C----CCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccce
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD-K----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 131 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~-K----~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~ 131 (264)
..|.-|+|. +++|.+||.+|-.+||.||.|+.|.+.+ | ++|| ||+-|+|..+...|+.+|||.+|.|+ +
T Consensus 33 kdsA~Iyig--gl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGF-aFLcYEDQRSTILAVDN~NGiki~gR---t 106 (219)
T KOG0126|consen 33 KDSAYIYIG--GLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGF-AFLCYEDQRSTILAVDNLNGIKILGR---T 106 (219)
T ss_pred ccceEEEEC--CCcccccCCcEEEEeeccCceEEEEEEecCCCCcccce-EEEEecCccceEEEEeccCCceecce---e
Confidence 444555555 5558999999999999999999999754 3 2455 99999999999999999999999999 9
Q ss_pred EEEEe
Q 024708 132 LHISY 136 (264)
Q Consensus 132 LrV~f 136 (264)
|||+.
T Consensus 107 irVDH 111 (219)
T KOG0126|consen 107 IRVDH 111 (219)
T ss_pred EEeee
Confidence 99973
No 52
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.74 E-value=3.1e-08 Score=91.29 Aligned_cols=83 Identities=24% Similarity=0.368 Sum_probs=69.5
Q ss_pred CCcE-EEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC-CC---ceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 58 ESNV-LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-GG---LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 58 ~s~V-L~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~-~g---~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
.+++ |.|.-++ ..+|.|+|+.||+..|+|+.+|+.+.+ .| .++||-|-++++|++|++.|||-++-.+ +|
T Consensus 39 ~skTNLIvNYLP--Q~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~K---TI 113 (360)
T KOG0145|consen 39 ESKTNLIVNYLP--QNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNK---TI 113 (360)
T ss_pred cccceeeeeecc--cccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccc---eE
Confidence 3443 4444443 589999999999999999999976543 22 4799999999999999999999999999 99
Q ss_pred EEEeeeCCCCcee
Q 024708 133 HISYSRHTDLSIK 145 (264)
Q Consensus 133 rV~fSK~~~l~vk 145 (264)
+|+|+++.+..+|
T Consensus 114 KVSyARPSs~~Ik 126 (360)
T KOG0145|consen 114 KVSYARPSSDSIK 126 (360)
T ss_pred EEEeccCChhhhc
Confidence 9999999987765
No 53
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=4.2e-08 Score=90.54 Aligned_cols=78 Identities=14% Similarity=0.335 Sum_probs=68.7
Q ss_pred CcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEc-----CCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEE
Q 024708 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD-----KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 133 (264)
Q Consensus 59 s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~-----K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~Lr 133 (264)
+..++|.+..+...|+.+.|++.|.+||+|.+.|+++ |++| ++||.|.+.++|++||+.|||++|-++ .||
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKG-YgFVSf~~k~dAEnAI~~MnGqWlG~R---~IR 135 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKG-YGFVSFPNKEDAENAIQQMNGQWLGRR---TIR 135 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccc-eeEEeccchHHHHHHHHHhCCeeeccc---eee
Confidence 3478888888878999999999999999999998754 3444 799999999999999999999999999 999
Q ss_pred EEeeeCC
Q 024708 134 ISYSRHT 140 (264)
Q Consensus 134 V~fSK~~ 140 (264)
-+||...
T Consensus 136 TNWATRK 142 (321)
T KOG0148|consen 136 TNWATRK 142 (321)
T ss_pred ccccccC
Confidence 9999543
No 54
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.63 E-value=6.7e-08 Score=84.83 Aligned_cols=74 Identities=16% Similarity=0.232 Sum_probs=63.7
Q ss_pred CcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcC-----CCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEE
Q 024708 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 133 (264)
Q Consensus 59 s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K-----~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~Lr 133 (264)
..+|+|.++. ..||++.|++||-+-|.|++|+|-+. .+| .|||||.+.|+|+.|++-||..+|||+ +|+
T Consensus 9 d~tiyvgnld--~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qG-ygF~Ef~~eedadYAikiln~VkLYgr---pIr 82 (203)
T KOG0131|consen 9 DATLYVGNLD--EKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQG-YGFAEFRTEEDADYAIKILNMVKLYGR---PIR 82 (203)
T ss_pred CceEEEecCC--HHHHHHHHHHHHHhcCceeeeecchhhhcccccc-eeEEEEechhhhHHHHHHHHHHHhcCc---eeE
Confidence 4588888665 59999999999999999999998432 234 599999999999999999999999999 888
Q ss_pred EEeee
Q 024708 134 ISYSR 138 (264)
Q Consensus 134 V~fSK 138 (264)
|+-+.
T Consensus 83 v~kas 87 (203)
T KOG0131|consen 83 VNKAS 87 (203)
T ss_pred EEecc
Confidence 87665
No 55
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.62 E-value=8e-08 Score=94.15 Aligned_cols=78 Identities=22% Similarity=0.364 Sum_probs=66.9
Q ss_pred cEEEEEEccCCcccCHHHHHHHHhccCCeeEEEE-EcCCC---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEE
Q 024708 60 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAM-FDKNG---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 135 (264)
Q Consensus 60 ~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIki-f~K~~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~ 135 (264)
..++|.+ +.|+++++.|..||+..|.|..+++ +++.. .+.||++|.+.++|..|++.|||.++.++ +|+|+
T Consensus 19 ~~v~vgn--ip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr---~l~v~ 93 (435)
T KOG0108|consen 19 SSVFVGN--IPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGR---KLRVN 93 (435)
T ss_pred cceEecC--CCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCc---eEEee
Confidence 6777775 4589999999999999999999996 44431 13599999999999999999999999999 99999
Q ss_pred eeeCCCC
Q 024708 136 YSRHTDL 142 (264)
Q Consensus 136 fSK~~~l 142 (264)
|+.....
T Consensus 94 ~~~~~~~ 100 (435)
T KOG0108|consen 94 YASNRKN 100 (435)
T ss_pred cccccch
Confidence 9977644
No 56
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.58 E-value=1.4e-07 Score=93.67 Aligned_cols=77 Identities=25% Similarity=0.332 Sum_probs=65.7
Q ss_pred CcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCC---ceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEE
Q 024708 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGG---LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 135 (264)
Q Consensus 59 s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g---~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~ 135 (264)
-.-|+|. |+++.+..++|..+||.||.|..|+|-+|..+ +.|||+|.+..+|..|++.+||..|.|+ ++-|+
T Consensus 117 k~rLIIR--NLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR---~VAVD 191 (678)
T KOG0127|consen 117 KWRLIIR--NLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGR---PVAVD 191 (678)
T ss_pred cceEEee--cCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCc---eeEEe
Confidence 4556666 45589999999999999999999999765432 2499999999999999999999999999 99999
Q ss_pred eeeCC
Q 024708 136 YSRHT 140 (264)
Q Consensus 136 fSK~~ 140 (264)
|+-..
T Consensus 192 WAV~K 196 (678)
T KOG0127|consen 192 WAVDK 196 (678)
T ss_pred eeccc
Confidence 98543
No 57
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.45 E-value=4.7e-07 Score=87.14 Aligned_cols=76 Identities=17% Similarity=0.235 Sum_probs=61.2
Q ss_pred EEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCC--ceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEeee
Q 024708 61 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGG--LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 138 (264)
Q Consensus 61 VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g--~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~fSK 138 (264)
.++|.|++ ..+|..+|+++|+.||+|+.+|+.....| .. ||+|++.++|.+|++.|||.-+.++ .|-|.-..
T Consensus 78 ~~~i~nl~--~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~k---ki~vg~~~ 151 (369)
T KOG0123|consen 78 LVFIKNLD--ESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGK---KIYVGLFE 151 (369)
T ss_pred eeeecCCC--cccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCC---eeEEeecc
Confidence 36666555 69999999999999999999997544322 34 9999999999999999999999998 77775554
Q ss_pred CCCC
Q 024708 139 HTDL 142 (264)
Q Consensus 139 ~~~l 142 (264)
....
T Consensus 152 ~~~e 155 (369)
T KOG0123|consen 152 RKEE 155 (369)
T ss_pred chhh
Confidence 4433
No 58
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.45 E-value=4.1e-07 Score=88.40 Aligned_cols=83 Identities=17% Similarity=0.230 Sum_probs=66.9
Q ss_pred cEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC----CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEE
Q 024708 60 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 135 (264)
Q Consensus 60 ~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~----~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~ 135 (264)
-.|||. .++...||.+|+++|++||.|.+|.|++.+ ...|+||.|.+.++|.+|+.+|++.+...+....|.|.
T Consensus 35 vKlfVg--qIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 35 VKLFVG--QIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhheec--cCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 356666 444689999999999999999999976433 12589999999999999999999988876545678899
Q ss_pred eeeCCCCce
Q 024708 136 YSRHTDLSI 144 (264)
Q Consensus 136 fSK~~~l~v 144 (264)
|+..++.++
T Consensus 113 ~Ad~E~er~ 121 (510)
T KOG0144|consen 113 YADGERERI 121 (510)
T ss_pred ccchhhhcc
Confidence 987765553
No 59
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.38 E-value=4.2e-06 Score=75.92 Aligned_cols=84 Identities=19% Similarity=0.125 Sum_probs=66.7
Q ss_pred CcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEE--EcCCCC---ceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEE
Q 024708 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAM--FDKNGG---LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 133 (264)
Q Consensus 59 s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIki--f~K~~g---~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~Lr 133 (264)
-++|||+.++. +|...+|++||-.|-.-+.-.+ -.|.+. ..|||.|.+..+|+.|++.|||..+.-..-.+|+
T Consensus 34 VRTLFVSGLP~--DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 34 VRTLFVSGLPN--DVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cceeeeccCCc--ccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 47999998875 8999999999999977665543 233321 3599999999999999999999998865233899
Q ss_pred EEeeeCCCCce
Q 024708 134 ISYSRHTDLSI 144 (264)
Q Consensus 134 V~fSK~~~l~v 144 (264)
|+++|.+.-.-
T Consensus 112 iElAKSNtK~k 122 (284)
T KOG1457|consen 112 IELAKSNTKRK 122 (284)
T ss_pred eeehhcCcccc
Confidence 99999876443
No 60
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.37 E-value=1.1e-06 Score=83.46 Aligned_cols=74 Identities=20% Similarity=0.256 Sum_probs=62.8
Q ss_pred CcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCC-eeCCCccceEEEEee
Q 024708 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGH-CIYDGGFCKLHISYS 137 (264)
Q Consensus 59 s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~-~I~g~~~c~LrV~fS 137 (264)
.++|+|.+++. .|++.+|++.|.+||.|..|+++..++ +|||+|.+.++|++|.+.+-.. .|.|. +|+|.|+
T Consensus 228 I~tLyIg~l~d--~v~e~dIrdhFyqyGeirsi~~~~~~~--CAFv~ftTR~aAE~Aae~~~n~lvI~G~---Rl~i~Wg 300 (377)
T KOG0153|consen 228 IKTLYIGGLND--EVLEQDIRDHFYQYGEIRSIRILPRKG--CAFVTFTTREAAEKAAEKSFNKLVINGF---RLKIKWG 300 (377)
T ss_pred eeEEEeccccc--chhHHHHHHHHhhcCCeeeEEeecccc--cceeeehhhHHHHHHHHhhcceeeecce---EEEEEeC
Confidence 46888887764 999999999999999999999887664 9999999999999987766554 44454 9999999
Q ss_pred eC
Q 024708 138 RH 139 (264)
Q Consensus 138 K~ 139 (264)
+.
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 88
No 61
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.37 E-value=4.9e-07 Score=83.69 Aligned_cols=81 Identities=20% Similarity=0.224 Sum_probs=67.5
Q ss_pred CCCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCCcc
Q 024708 55 LEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGF 129 (264)
Q Consensus 55 ~~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~-----~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~ 129 (264)
+.++.+-|||+-++ .+.+..+|-+.|-.||.|+.-|+|-.+ +- .+||.|+++.+|+.||..|||..|.-+
T Consensus 281 eGPeGCNlFIYHLP--QEFgDaEliQmF~PFGhivSaKVFvDRATNQSKC-FGFVSfDNp~SaQaAIqAMNGFQIGMK-- 355 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLP--QEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKC-FGFVSFDNPASAQAAIQAMNGFQIGMK-- 355 (371)
T ss_pred cCCCcceEEEEeCc--hhhccHHHHHHhccccceeeeeeeehhccccccc-eeeEecCCchhHHHHHHHhcchhhhhh--
Confidence 45788999999775 588899999999999999999976432 22 399999999999999999999999988
Q ss_pred ceEEEEeeeCCC
Q 024708 130 CKLHISYSRHTD 141 (264)
Q Consensus 130 c~LrV~fSK~~~ 141 (264)
+|+|...|.++
T Consensus 356 -RLKVQLKRPkd 366 (371)
T KOG0146|consen 356 -RLKVQLKRPKD 366 (371)
T ss_pred -hhhhhhcCccc
Confidence 88886554443
No 62
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.36 E-value=5.5e-07 Score=83.38 Aligned_cols=84 Identities=17% Similarity=0.271 Sum_probs=70.9
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCC---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEE
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 134 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV 134 (264)
..+.|||..++- .-.||+++.+|..||.|.++.+++... ..||||.|.+..+|+.||+.|+|..-.-+-...|.|
T Consensus 18 ~drklfvgml~k--qq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 18 DDRKLFVGMLNK--QQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred cchhhhhhhhcc--cccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 457899999984 789999999999999999999876421 249999999999999999999998776553568999
Q ss_pred EeeeCCCCc
Q 024708 135 SYSRHTDLS 143 (264)
Q Consensus 135 ~fSK~~~l~ 143 (264)
.|+..++.+
T Consensus 96 K~ADTdkER 104 (371)
T KOG0146|consen 96 KFADTDKER 104 (371)
T ss_pred EeccchHHH
Confidence 999887654
No 63
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.34 E-value=1.1e-06 Score=89.42 Aligned_cols=72 Identities=26% Similarity=0.352 Sum_probs=63.9
Q ss_pred EEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCC-------ceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEE
Q 024708 62 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGG-------LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 134 (264)
Q Consensus 62 L~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g-------~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV 134 (264)
|+|.|+| +..|.+.|..+|+++|.|+.|.|-.++++ +.|||||.+.++|+.|++.|+|..|.|. .|.|
T Consensus 518 lfvkNln--f~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH---~l~l 592 (725)
T KOG0110|consen 518 LFVKNLN--FDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGH---KLEL 592 (725)
T ss_pred hhhhcCC--cccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCc---eEEE
Confidence 9999887 69999999999999999999987544321 3599999999999999999999999998 8899
Q ss_pred Eeee
Q 024708 135 SYSR 138 (264)
Q Consensus 135 ~fSK 138 (264)
.+|.
T Consensus 593 k~S~ 596 (725)
T KOG0110|consen 593 KISE 596 (725)
T ss_pred Eecc
Confidence 9987
No 64
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.33 E-value=3.8e-07 Score=90.55 Aligned_cols=67 Identities=22% Similarity=0.252 Sum_probs=57.8
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCC
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 127 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~ 127 (264)
....|+|.+++ ..|++++|+.||+.||+|..|+.-..+ .+..||+|-|+.+|+.|+++|++..|.++
T Consensus 74 ~~~~L~v~nl~--~~Vsn~~L~~~f~~yGeir~ir~t~~~-~~~~~v~FyDvR~A~~Alk~l~~~~~~~~ 140 (549)
T KOG4660|consen 74 NQGTLVVFNLP--RSVSNDTLLRIFGAYGEIREIRETPNK-RGIVFVEFYDVRDAERALKALNRREIAGK 140 (549)
T ss_pred ccceEEEEecC--CcCCHHHHHHHHHhhcchhhhhccccc-CceEEEEEeehHhHHHHHHHHHHHHhhhh
Confidence 45688888665 599999999999999999998753222 23899999999999999999999999998
No 65
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.31 E-value=5.1e-07 Score=81.73 Aligned_cols=67 Identities=16% Similarity=0.233 Sum_probs=59.3
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCC
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 126 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g 126 (264)
...+|||-|+.. .+|||+|+.+|+.|-...+++|..|++--.|||+|++.++|..||.+|+|..|-.
T Consensus 209 acstlfianl~~--~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~s~ 275 (284)
T KOG1457|consen 209 ACSTLFIANLGP--NCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLLSS 275 (284)
T ss_pred hhhhHhhhccCC--CCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcceecc
Confidence 346899987764 9999999999999999999999888755579999999999999999999988764
No 66
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=2e-06 Score=82.81 Aligned_cols=73 Identities=21% Similarity=0.206 Sum_probs=62.7
Q ss_pred EEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC-CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEeeeC
Q 024708 61 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 139 (264)
Q Consensus 61 VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~-~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~fSK~ 139 (264)
+|+|. ..||+..|+++|+.+|.|+.|++-+.. .-.+|+|.|.++++|++|++.||...|.|+ .+||.||..
T Consensus 3 sl~vg-----~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~---~~rim~s~r 74 (369)
T KOG0123|consen 3 SLYVG-----PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGK---PIRIMWSQR 74 (369)
T ss_pred ceecC-----CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCc---EEEeehhcc
Confidence 56666 489999999999999999999863222 235899999999999999999999999999 999999966
Q ss_pred CC
Q 024708 140 TD 141 (264)
Q Consensus 140 ~~ 141 (264)
..
T Consensus 75 d~ 76 (369)
T KOG0123|consen 75 DP 76 (369)
T ss_pred CC
Confidence 53
No 67
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.26 E-value=9.7e-07 Score=82.37 Aligned_cols=74 Identities=20% Similarity=0.299 Sum_probs=65.8
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEe
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 136 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~f 136 (264)
..+..|+|.|+- ...|.++|+..|++||.|.+.+|.+ + .+||.|+-.++|..|+..|||..+.|+ +|+|..
T Consensus 76 k~stkl~vgNis--~tctn~ElRa~fe~ygpviecdivk-d---y~fvh~d~~eda~~air~l~~~~~~gk---~m~vq~ 146 (346)
T KOG0109|consen 76 KASTKLHVGNIS--PTCTNQELRAKFEKYGPVIECDIVK-D---YAFVHFDRAEDAVEAIRGLDNTEFQGK---RMHVQL 146 (346)
T ss_pred CCccccccCCCC--ccccCHHHhhhhcccCCceeeeeec-c---eeEEEEeeccchHHHHhcccccccccc---eeeeee
Confidence 467789998665 5899999999999999999999974 2 799999999999999999999999999 999988
Q ss_pred eeC
Q 024708 137 SRH 139 (264)
Q Consensus 137 SK~ 139 (264)
|..
T Consensus 147 sts 149 (346)
T KOG0109|consen 147 STS 149 (346)
T ss_pred ecc
Confidence 744
No 68
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.17 E-value=6.1e-06 Score=74.29 Aligned_cols=78 Identities=21% Similarity=0.385 Sum_probs=67.7
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEE
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 135 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~ 135 (264)
.+++.+|++.++. ..++.+.|..+|+.|..-.+|++..-..+ .|||+|.+..+|..|+++|+|..|--+ .+|+|.
T Consensus 143 ~ppn~ilf~~niP--~es~~e~l~~lf~qf~g~keir~i~~~~~-iAfve~~~d~~a~~a~~~lq~~~it~~--~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIP--SESESEMLSDLFEQFPGFKEIRLIPPRSG-IAFVEFLSDRQASAAQQALQGFKITKK--NTMQIT 217 (221)
T ss_pred CCCceEEEEecCC--cchhHHHHHHHHhhCcccceeEeccCCCc-eeEEecchhhhhHHHhhhhccceeccC--ceEEec
Confidence 5789999999775 58999999999999999999997653323 699999999999999999999999843 389999
Q ss_pred eee
Q 024708 136 YSR 138 (264)
Q Consensus 136 fSK 138 (264)
|++
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 986
No 69
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.14 E-value=3.8e-06 Score=73.95 Aligned_cols=78 Identities=21% Similarity=0.293 Sum_probs=63.6
Q ss_pred CcEEEEEEccCCcccCHHHHHHHHhccCCeeEE-EEEcC----CCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEE
Q 024708 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI-AMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 133 (264)
Q Consensus 59 s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rI-kif~K----~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~Lr 133 (264)
+.-|+|.|+. ..|++..|+.+||.||.+.+- +|++. +....|||-|++.|.+.+|+..+||+-+..+ .++
T Consensus 96 ganlfvgNLd--~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr---~it 170 (203)
T KOG0131|consen 96 GANLFVGNLD--PEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNR---PIT 170 (203)
T ss_pred cccccccccC--cchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCC---ceE
Confidence 3567777665 599999999999999998874 34332 2223599999999999999999999999998 999
Q ss_pred EEeeeCCC
Q 024708 134 ISYSRHTD 141 (264)
Q Consensus 134 V~fSK~~~ 141 (264)
|+|++..+
T Consensus 171 v~ya~k~~ 178 (203)
T KOG0131|consen 171 VSYAFKKD 178 (203)
T ss_pred EEEEEecC
Confidence 99987654
No 70
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.13 E-value=1e-06 Score=79.54 Aligned_cols=76 Identities=17% Similarity=0.223 Sum_probs=62.8
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC--CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 134 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~--~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV 134 (264)
+.-++|+|.|+- ..|+|+.|++||-.-|.|.||+|-+.+ +...|||+|.+..+...|++.|||.++++. .|+|
T Consensus 7 e~drtl~v~n~~--~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~---e~q~ 81 (267)
T KOG4454|consen 7 EMDRTLLVQNMY--SGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEED---EEQR 81 (267)
T ss_pred chhhHHHHHhhh--hhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccc---hhhc
Confidence 345788888554 689999999999999999999985422 122499999999999999999999999998 7777
Q ss_pred Eee
Q 024708 135 SYS 137 (264)
Q Consensus 135 ~fS 137 (264)
.+-
T Consensus 82 ~~r 84 (267)
T KOG4454|consen 82 TLR 84 (267)
T ss_pred ccc
Confidence 654
No 71
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.13 E-value=2.7e-06 Score=81.67 Aligned_cols=68 Identities=22% Similarity=0.475 Sum_probs=57.6
Q ss_pred EEEccCCcccCHHHHHHHHhccCCeeEEEEEc-----CCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEE
Q 024708 64 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD-----KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 135 (264)
Q Consensus 64 V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~-----K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~ 135 (264)
|++..+.+.+.||.|+..|..||.|+.|.+-- |.++| |||||+=+|.|+.|++.|||..+.|+ .|+|.
T Consensus 116 vYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgF-AFVEYEvPEaAqLAlEqMNg~mlGGR---NiKVg 188 (544)
T KOG0124|consen 116 VYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGF-AFVEYEVPEAAQLALEQMNGQMLGGR---NIKVG 188 (544)
T ss_pred eeeeeeEEEechHHHHhhccCCCCcceeecccccccccccce-EEEEEeCcHHHHHHHHHhccccccCc---ccccc
Confidence 44445558999999999999999999999732 33565 99999999999999999999999998 66665
No 72
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.11 E-value=4.1e-06 Score=83.31 Aligned_cols=69 Identities=22% Similarity=0.391 Sum_probs=59.4
Q ss_pred EEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcC-----CCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEe
Q 024708 62 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 136 (264)
Q Consensus 62 L~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K-----~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~f 136 (264)
|+|.|++ +.+|+++|..||..||.|+.|.+... .++ ++||||.+.++|..|.+.|||..|-|. .|+|..
T Consensus 281 l~vgnLH--fNite~~lr~ifepfg~Ie~v~l~~d~~tG~skg-fGfi~f~~~~~ar~a~e~lngfelAGr---~ikV~~ 354 (549)
T KOG0147|consen 281 LYVGNLH--FNITEDMLRGIFEPFGKIENVQLTKDSETGRSKG-FGFITFVNKEDARKALEQLNGFELAGR---LIKVSV 354 (549)
T ss_pred hhhcccc--cCchHHHHhhhccCcccceeeeeccccccccccC-cceEEEecHHHHHHHHHHhccceecCc---eEEEEE
Confidence 7888776 59999999999999999999986332 234 599999999999999999999999999 777753
No 73
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.06 E-value=3.8e-06 Score=85.59 Aligned_cols=77 Identities=18% Similarity=0.362 Sum_probs=67.1
Q ss_pred cEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEE
Q 024708 60 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 134 (264)
Q Consensus 60 ~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~-----~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV 134 (264)
.-|+|.|+ ++..|..+++.||+.||.|..|.|-.|. +|| |||+|-++.+|.+|+++|.+..+||+ .|.+
T Consensus 614 tKIlVRNi--pFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF-~Fv~f~t~~ea~nA~~al~STHlyGR---rLVL 687 (725)
T KOG0110|consen 614 TKILVRNI--PFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGF-GFVDFLTPREAKNAFDALGSTHLYGR---RLVL 687 (725)
T ss_pred ceeeeecc--chHHHHHHHHHHHhcccceeeeccchhhcchhhccc-eeeeccCcHHHHHHHHhhcccceech---hhhe
Confidence 46777754 5899999999999999999999986652 244 89999999999999999999999999 9999
Q ss_pred EeeeCCCC
Q 024708 135 SYSRHTDL 142 (264)
Q Consensus 135 ~fSK~~~l 142 (264)
+|++..+.
T Consensus 688 EwA~~d~~ 695 (725)
T KOG0110|consen 688 EWAKSDNT 695 (725)
T ss_pred ehhccchH
Confidence 99998753
No 74
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.05 E-value=1.1e-05 Score=81.13 Aligned_cols=79 Identities=13% Similarity=0.098 Sum_probs=65.4
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC--C--CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEE
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--G--GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 133 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~--~--g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~Lr 133 (264)
-++-|||+.|.. .+...+|.+|||+||.|+-.|+++.. . ..++||.|.+.++|.++|++|+...|.|+ .|.
T Consensus 404 ~gRNlWVSGLSs--tTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGr---mIS 478 (940)
T KOG4661|consen 404 LGRNLWVSGLSS--TTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGR---MIS 478 (940)
T ss_pred cccceeeecccc--chhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcce---eee
Confidence 457899998753 56667999999999999987765422 1 24799999999999999999999999999 899
Q ss_pred EEeeeCCC
Q 024708 134 ISYSRHTD 141 (264)
Q Consensus 134 V~fSK~~~ 141 (264)
|+-+|..-
T Consensus 479 VEkaKNEp 486 (940)
T KOG4661|consen 479 VEKAKNEP 486 (940)
T ss_pred eeecccCc
Confidence 98887653
No 75
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.05 E-value=2.2e-05 Score=76.78 Aligned_cols=77 Identities=19% Similarity=0.203 Sum_probs=63.1
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEE-cC---CCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF-DK---NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif-~K---~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
+..+-+||..++ -++.||+|.-||.+-|.|-+++++ ++ .+..+|||.|.+.++|+.|++.||+..|-.+ ..|
T Consensus 81 ~~G~EVfvGkIP--rD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~G--K~i 156 (506)
T KOG0117|consen 81 PRGCEVFVGKIP--RDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPG--KLL 156 (506)
T ss_pred CCCceEEecCCC--ccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCC--CEe
Confidence 556788888665 599999999999999999999963 31 2234799999999999999999999999765 366
Q ss_pred EEEee
Q 024708 133 HISYS 137 (264)
Q Consensus 133 rV~fS 137 (264)
+|..|
T Consensus 157 gvc~S 161 (506)
T KOG0117|consen 157 GVCVS 161 (506)
T ss_pred EEEEe
Confidence 66655
No 76
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.94 E-value=1.5e-05 Score=81.53 Aligned_cols=82 Identities=16% Similarity=0.348 Sum_probs=71.6
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEE-EcCC------CCceEEEEeCCHHHHHHHHHHhcCCeeCCCc
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAM-FDKN------GGLQALIQYPDVQTAVVAKEALEGHCIYDGG 128 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIki-f~K~------~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~ 128 (264)
.+.++-|+|.|+|+ .|+++.|-..|+.||.|..|+| +.++ ...|+||-|.+..+|++|+..|+|..+++.
T Consensus 171 DP~TTNlyv~Nlnp--sv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~- 247 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNP--SVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY- 247 (877)
T ss_pred CCcccceeeecCCc--cccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee-
Confidence 46678899999986 8999999999999999999996 3321 235899999999999999999999999998
Q ss_pred cceEEEEeeeCCCC
Q 024708 129 FCKLHISYSRHTDL 142 (264)
Q Consensus 129 ~c~LrV~fSK~~~l 142 (264)
.|++-|+|.-.+
T Consensus 248 --e~K~gWgk~V~i 259 (877)
T KOG0151|consen 248 --EMKLGWGKAVPI 259 (877)
T ss_pred --eeeecccccccc
Confidence 999999987655
No 77
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.92 E-value=4.1e-05 Score=70.09 Aligned_cols=77 Identities=19% Similarity=0.323 Sum_probs=62.7
Q ss_pred EEEEEccCCcccCHHHHHHHHhccCCeeEEEE-EcCCC--CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEeee
Q 024708 62 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAM-FDKNG--GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 138 (264)
Q Consensus 62 L~V~~lN~~~~VT~d~L~~LFs~yG~V~rIki-f~K~~--g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~fSK 138 (264)
..|.+.|+++.|+.++|.+||..||.++++-+ |++.+ -.+|-|.|...++|..|++.+||..+.|+ .|+|+..-
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~---~mk~~~i~ 160 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGR---PMKIEIIS 160 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCc---eeeeEEec
Confidence 33444566689999999999999999999876 66542 14799999999999999999999999998 78877654
Q ss_pred CCC
Q 024708 139 HTD 141 (264)
Q Consensus 139 ~~~ 141 (264)
..+
T Consensus 161 ~~~ 163 (243)
T KOG0533|consen 161 SPS 163 (243)
T ss_pred Ccc
Confidence 443
No 78
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=97.90 E-value=3.6e-05 Score=70.02 Aligned_cols=67 Identities=18% Similarity=0.307 Sum_probs=51.0
Q ss_pred CcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEE-cCC----CCceEEEEeCCHHHHHHHHHHhcCCeeCCC
Q 024708 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF-DKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDG 127 (264)
Q Consensus 59 s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif-~K~----~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~ 127 (264)
++.--|.+.++.+.++.|.|++.|++||+|++.+++ +|+ +| .+||.|.|.++|.+|.+.-| -.|.|+
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskG-yGfVTf~d~~aa~rAc~dp~-piIdGR 81 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKG-YGFVTFRDAEAATRACKDPN-PIIDGR 81 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccc-eeeEEeecHHHHHHHhcCCC-Cccccc
Confidence 333334444566899999999999999999999864 332 34 69999999999999998765 345666
No 79
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=97.85 E-value=5.5e-05 Score=75.73 Aligned_cols=78 Identities=21% Similarity=0.269 Sum_probs=61.4
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEE-cCC---CCceEEEEeCCHHHHHHHHHHh-----cC-CeeCCC
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF-DKN---GGLQALIQYPDVQTAVVAKEAL-----EG-HCIYDG 127 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif-~K~---~g~~AfVqF~d~e~A~~A~~~L-----nG-~~I~g~ 127 (264)
...+|||.|+ .|++|+++|.+.|++||.|.-++|. .+. ..++|||.|.+..+|+.||..- .| ..|.|+
T Consensus 291 ~~~tVFvRNL--~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR 368 (678)
T KOG0127|consen 291 EGKTVFVRNL--PFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGR 368 (678)
T ss_pred ccceEEEecC--CccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEecc
Confidence 3489999865 4899999999999999999988753 332 1247999999999999999988 34 556676
Q ss_pred ccceEEEEeeeCC
Q 024708 128 GFCKLHISYSRHT 140 (264)
Q Consensus 128 ~~c~LrV~fSK~~ 140 (264)
.|+|..+-.+
T Consensus 369 ---~Lkv~~Av~R 378 (678)
T KOG0127|consen 369 ---LLKVTLAVTR 378 (678)
T ss_pred ---EEeeeeccch
Confidence 7888876443
No 80
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=97.83 E-value=5.1e-05 Score=67.83 Aligned_cols=76 Identities=14% Similarity=0.174 Sum_probs=59.8
Q ss_pred cEEEEEEccCCcccCHHHHHHHHhcc-CCeeEEEEE-cCCC---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEE
Q 024708 60 NVLLASIENMQYAVTLDVLHMVFSAF-GPVQKIAMF-DKNG---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 134 (264)
Q Consensus 60 ~VL~V~~lN~~~~VT~d~L~~LFs~y-G~V~rIkif-~K~~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV 134 (264)
-|+.|.-+ +.-+.+..+...|..| |.|.++++- +|+. ..+|||||++.+.|..|-+.||+.-++++ .|.+
T Consensus 50 g~~~~~~~--p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~---lL~c 124 (214)
T KOG4208|consen 50 GVVYVDHI--PHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEH---LLEC 124 (214)
T ss_pred cceeeccc--ccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhh---eeee
Confidence 45665543 3578889999999999 666676773 3321 14699999999999999999999999998 8888
Q ss_pred EeeeCC
Q 024708 135 SYSRHT 140 (264)
Q Consensus 135 ~fSK~~ 140 (264)
.|-...
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 887666
No 81
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.82 E-value=9.3e-05 Score=57.93 Aligned_cols=70 Identities=21% Similarity=0.349 Sum_probs=47.1
Q ss_pred cEEEEEEccCCcccCH----HHHHHHHhccC-CeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEE
Q 024708 60 NVLLASIENMQYAVTL----DVLHMVFSAFG-PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 134 (264)
Q Consensus 60 ~VL~V~~lN~~~~VT~----d~L~~LFs~yG-~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV 134 (264)
..|+|+||+. ..+. ..|.+|+..+| .|..| . +..|.|.|.+.+.|.+|..-|+|..+||. +|.|
T Consensus 3 s~L~V~NLP~--~~d~~~I~~RL~qLsdNCGGkVl~v--~----~~tAilrF~~~~~A~RA~KRmegEdVfG~---kI~v 71 (90)
T PF11608_consen 3 SLLYVSNLPT--NKDPSSIKNRLRQLSDNCGGKVLSV--S----GGTAILRFPNQEFAERAQKRMEGEDVFGN---KISV 71 (90)
T ss_dssp EEEEEES--T--TS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSSS-----EE
T ss_pred cEEEEecCCC--CCCHHHHHHHHHHHhhccCCEEEEE--e----CCEEEEEeCCHHHHHHHHHhhcccccccc---eEEE
Confidence 4688887764 3444 35889999998 66665 1 22699999999999999999999999999 9999
Q ss_pred EeeeCC
Q 024708 135 SYSRHT 140 (264)
Q Consensus 135 ~fSK~~ 140 (264)
.|++..
T Consensus 72 ~~~~~~ 77 (90)
T PF11608_consen 72 SFSPKN 77 (90)
T ss_dssp ESS--S
T ss_pred EEcCCc
Confidence 998554
No 82
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.76 E-value=7.3e-05 Score=71.27 Aligned_cols=79 Identities=20% Similarity=0.274 Sum_probs=65.6
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCee--------EEEEEcCCCC---ceEEEEeCCHHHHHHHHHHhcCCeeC
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ--------KIAMFDKNGG---LQALIQYPDVQTAVVAKEALEGHCIY 125 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~--------rIkif~K~~g---~~AfVqF~d~e~A~~A~~~LnG~~I~ 125 (264)
..|+-++|++|++ +||.+++.++|+++|-|. +||+++.+.| +-|||.|--.++...|+..||+..|.
T Consensus 132 ~~Nt~VYVsgLP~--DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 132 KVNTSVYVSGLPL--DITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred ccCceEEecCCCC--cccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 3456688887765 999999999999999986 5777765432 24999999999999999999999999
Q ss_pred CCccceEEEEeeeCC
Q 024708 126 DGGFCKLHISYSRHT 140 (264)
Q Consensus 126 g~~~c~LrV~fSK~~ 140 (264)
|. .|+|+-|+-+
T Consensus 210 g~---~~rVerAkfq 221 (382)
T KOG1548|consen 210 GK---KLRVERAKFQ 221 (382)
T ss_pred Cc---EEEEehhhhh
Confidence 86 9999987654
No 83
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.71 E-value=2.7e-05 Score=70.18 Aligned_cols=69 Identities=20% Similarity=0.372 Sum_probs=59.9
Q ss_pred EEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEeeeC
Q 024708 64 ASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 139 (264)
Q Consensus 64 V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~fSK~ 139 (264)
|.+.++.+.+.+.+|..+|..||.|.+|.+. + ++ +||+|+|..+|..|+..|||..|.+. ++.|+|++.
T Consensus 4 v~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--~-gf-~fv~fed~rda~Dav~~l~~~~l~~e---~~vve~~r~ 72 (216)
T KOG0106|consen 4 VYIGRLPYRARERDVERFFKGYGKIPDADMK--N-GF-GFVEFEDPRDADDAVHDLDGKELCGE---RLVVEHARG 72 (216)
T ss_pred eeecccCCccchhHHHHHHhhccccccceee--c-cc-ceeccCchhhhhcccchhcCceecce---eeeeecccc
Confidence 4444556899999999999999999998874 3 44 89999999999999999999999998 689999874
No 84
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=97.69 E-value=0.00011 Score=70.68 Aligned_cols=76 Identities=18% Similarity=0.311 Sum_probs=59.3
Q ss_pred CCCcEEEEEEccCCcccCHH---HHHHHHhccCCeeEEEEEcCCCC--------ceEEEEeCCHHHHHHHHHHhcCCeeC
Q 024708 57 PESNVLLASIENMQYAVTLD---VLHMVFSAFGPVQKIAMFDKNGG--------LQALIQYPDVQTAVVAKEALEGHCIY 125 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d---~L~~LFs~yG~V~rIkif~K~~g--------~~AfVqF~d~e~A~~A~~~LnG~~I~ 125 (264)
..++|+.+.|.--+.+|+++ ++.+-+++||+|.||.|++.+.+ ..-||+|++..++.+|+++|||..+.
T Consensus 444 ~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~ALdGRfFg 523 (544)
T KOG0124|consen 444 QESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQALDGRFFG 523 (544)
T ss_pred ccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHHhhccceec
Confidence 36778887755333456553 68889999999999999875532 35899999999999999999999888
Q ss_pred CCccceEEEE
Q 024708 126 DGGFCKLHIS 135 (264)
Q Consensus 126 g~~~c~LrV~ 135 (264)
|+ ++..+
T Consensus 524 Gr---~VvAE 530 (544)
T KOG0124|consen 524 GR---KVVAE 530 (544)
T ss_pred Cc---eeehh
Confidence 87 54443
No 85
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.50 E-value=0.00061 Score=66.88 Aligned_cols=74 Identities=19% Similarity=0.181 Sum_probs=56.7
Q ss_pred EEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC----CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEee
Q 024708 62 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 137 (264)
Q Consensus 62 L~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~----~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~fS 137 (264)
|+|.|+ +.++|+++|.+.|..||.|++..|..|+ ....|||+|.+.++++.|+++= =..|.++ +|.|+--
T Consensus 291 i~V~nl--P~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~---kl~Veek 364 (419)
T KOG0116|consen 291 IFVKNL--PPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGR---KLNVEEK 364 (419)
T ss_pred eEeecC--CCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCe---eEEEEec
Confidence 666654 5699999999999999999999875443 1256999999999999999875 4455555 8888765
Q ss_pred eCCC
Q 024708 138 RHTD 141 (264)
Q Consensus 138 K~~~ 141 (264)
+...
T Consensus 365 ~~~~ 368 (419)
T KOG0116|consen 365 RPGF 368 (419)
T ss_pred cccc
Confidence 5443
No 86
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.40 E-value=0.00042 Score=62.96 Aligned_cols=84 Identities=14% Similarity=0.260 Sum_probs=68.1
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcC-----CCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccce
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 131 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K-----~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~ 131 (264)
...+.++|++. .+.+|.+++...|..||.|.+|.|... .++ .|+|+|.+.+.+..|+. |||..|.+. .
T Consensus 99 ~d~~sv~v~nv--d~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~-~~yvef~~~~~~~~ay~-l~gs~i~~~---~ 171 (231)
T KOG4209|consen 99 VDAPSVWVGNV--DFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKG-FAYVEFSSYELVEEAYK-LDGSEIPGP---A 171 (231)
T ss_pred cCCceEEEecc--ccccccchhhheeeccCCccceeeeccccCCCcce-eEEEecccHhhhHHHhh-cCCcccccc---c
Confidence 45678888854 578999999999999999998876322 133 59999999999999999 999999999 8
Q ss_pred EEEEeeeCCCCceecC
Q 024708 132 LHISYSRHTDLSIKVN 147 (264)
Q Consensus 132 LrV~fSK~~~l~vk~n 147 (264)
++|++-+....-+.+.
T Consensus 172 i~vt~~r~~~pg~~~~ 187 (231)
T KOG4209|consen 172 IEVTLKRTNVPGMGRS 187 (231)
T ss_pred ceeeeeeeecCCcCCC
Confidence 9999888775544443
No 87
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.39 E-value=0.0004 Score=68.28 Aligned_cols=74 Identities=12% Similarity=0.239 Sum_probs=62.2
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEe
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 136 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~f 136 (264)
...+.|+|.|++ ++.|=+.|++-|-.||.|+-..|.+.-+ ....|.|.++++|++|+..|||.++.++ .|+|.|
T Consensus 534 rKa~qIiirNlP--~dfTWqmlrDKfre~G~v~yadime~Gk-skGVVrF~s~edAEra~a~Mngs~l~Gr---~I~V~y 607 (608)
T KOG4212|consen 534 RKACQIIIRNLP--FDFTWQMLRDKFREIGHVLYADIMENGK-SKGVVRFFSPEDAERACALMNGSRLDGR---NIKVTY 607 (608)
T ss_pred ccccEEEEecCC--ccccHHHHHHHHHhccceehhhhhccCC-ccceEEecCHHHHHHHHHHhccCcccCc---eeeeee
Confidence 455677777654 6899999999999999999888754322 2468999999999999999999999999 888887
No 88
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.34 E-value=0.0008 Score=54.00 Aligned_cols=59 Identities=19% Similarity=0.210 Sum_probs=38.3
Q ss_pred cEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCC
Q 024708 60 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGH 122 (264)
Q Consensus 60 ~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~ 122 (264)
.||.|..++ ..++-++|+++|+.||.|.-|.+-+.. ..|+|.|.+.+.|+.|++.+.-.
T Consensus 2 ~il~~~g~~--~~~~re~iK~~f~~~g~V~yVD~~~G~--~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLG--EPTSREDIKEAFSQFGEVAYVDFSRGD--TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE----SS--HHHHHHHT-SS--EEEEE--TT---SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCC--CCcCHHHHHHHHHhcCCcceEEecCCC--CEEEEEECCcchHHHHHHHHHhc
Confidence 478888655 589999999999999988887765433 37999999999999999988755
No 89
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.25 E-value=0.0013 Score=64.76 Aligned_cols=74 Identities=19% Similarity=0.317 Sum_probs=59.9
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHh-ccCCeeEEEE-EcCCC--CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFS-AFGPVQKIAM-FDKNG--GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs-~yG~V~rIki-f~K~~--g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
...+.+||+ |++|++.-++|++||. +-|.|.-|.+ |+.++ ..||.|||.++|.+++|++.||.+.+.++ +|
T Consensus 42 ~r~R~vfIt--NIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR---~l 116 (608)
T KOG4212|consen 42 ARDRSVFIT--NIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGR---EL 116 (608)
T ss_pred cccceEEEe--cCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCc---eE
Confidence 445567777 4558999999999986 6789999985 55331 24899999999999999999999999998 77
Q ss_pred EEE
Q 024708 133 HIS 135 (264)
Q Consensus 133 rV~ 135 (264)
+|.
T Consensus 117 ~vK 119 (608)
T KOG4212|consen 117 VVK 119 (608)
T ss_pred EEe
Confidence 775
No 90
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.20 E-value=0.00024 Score=69.40 Aligned_cols=68 Identities=21% Similarity=0.300 Sum_probs=55.0
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcC-----------C------CCceEEEEeCCHHHHHHHHHHhc
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----------N------GGLQALIQYPDVQTAVVAKEALE 120 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K-----------~------~g~~AfVqF~d~e~A~~A~~~Ln 120 (264)
++++|++.+|.+ +-..+.|..||+.+|.|..|+|..- + ..-+|||||+..+.|.+|.+.|+
T Consensus 230 ~srtivaenLP~--Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 230 PSRTIVAENLPL--DHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccceEEEecCCc--chHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 789999998876 4455899999999999999998543 1 12479999999999999999997
Q ss_pred CCeeCCC
Q 024708 121 GHCIYDG 127 (264)
Q Consensus 121 G~~I~g~ 127 (264)
-..-+..
T Consensus 308 ~e~~wr~ 314 (484)
T KOG1855|consen 308 PEQNWRM 314 (484)
T ss_pred hhhhhhh
Confidence 6655544
No 91
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.15 E-value=0.00052 Score=65.58 Aligned_cols=80 Identities=16% Similarity=0.250 Sum_probs=64.6
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeE--------EEEEcCC-----CCceEEEEeCCHHHHHHHHHHhcCC
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK--------IAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGH 122 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~r--------Ikif~K~-----~g~~AfVqF~d~e~A~~A~~~LnG~ 122 (264)
...+-.++|++++. .+++++|+..|.+.|.|.+ |+|.+.+ ++ -|+|.|+|...|+.|+..+++.
T Consensus 63 ~s~~~ti~v~g~~d--~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KG-eatvS~~D~~~akaai~~~agk 139 (351)
T KOG1995|consen 63 KSDNETIFVWGCPD--SVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKG-EATVSYEDPPAAKAAIEWFAGK 139 (351)
T ss_pred ccccccceeeccCc--cchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCC-ceeeeecChhhhhhhhhhhccc
Confidence 34556888888874 9999999999999998864 3443211 23 5999999999999999999999
Q ss_pred eeCCCccceEEEEeeeCCC
Q 024708 123 CIYDGGFCKLHISYSRHTD 141 (264)
Q Consensus 123 ~I~g~~~c~LrV~fSK~~~ 141 (264)
.+.+. +|+|.+++...
T Consensus 140 df~gn---~ikvs~a~~r~ 155 (351)
T KOG1995|consen 140 DFCGN---TIKVSLAERRT 155 (351)
T ss_pred cccCC---Cchhhhhhhcc
Confidence 99997 89998876554
No 92
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.98 E-value=0.0005 Score=62.07 Aligned_cols=67 Identities=19% Similarity=0.278 Sum_probs=54.8
Q ss_pred CcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEE
Q 024708 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 134 (264)
Q Consensus 59 s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV 134 (264)
..+|+|.++. ..+..++|...|+.||.+....+ ..+ .|||+|+..++|.+|++.|+|.++.+. .|++
T Consensus 99 ~~r~~~~~~~--~r~~~qdl~d~~~~~g~~~~~~~-~~~---~~~v~Fs~~~da~ra~~~l~~~~~~~~---~l~~ 165 (216)
T KOG0106|consen 99 HFRLIVRNLS--LRVSWQDLKDHFRPAGEVTYVDA-RRN---FAFVEFSEQEDAKRALEKLDGKKLNGR---RISV 165 (216)
T ss_pred cceeeeccch--hhhhHHHHhhhhcccCCCchhhh-hcc---ccceeehhhhhhhhcchhccchhhcCc---eeee
Confidence 4567777555 37888999999999999944334 333 599999999999999999999999986 8887
No 93
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.90 E-value=0.0027 Score=55.96 Aligned_cols=65 Identities=17% Similarity=0.320 Sum_probs=48.1
Q ss_pred cCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhc--CCeeCCCccceEEEEeeeCCCC
Q 024708 73 VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE--GHCIYDGGFCKLHISYSRHTDL 142 (264)
Q Consensus 73 VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~Ln--G~~I~g~~~c~LrV~fSK~~~l 142 (264)
-..+.|..+|..|+.+..+..+++=+ -.+|.|.+.+.|+.|+..|+ +..+.+. .|+|.|++...+
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sFr--Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~---~l~~yf~~~~~~ 73 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSFR--RIRVVFESPESAQRARQLLHWDGTSFNGK---RLRVYFGQPTPI 73 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTTT--EEEEE-SSTTHHHHHHHTST--TSEETTE---E-EEE----SS-
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCCC--EEEEEeCCHHHHHHHHHHhcccccccCCC---ceEEEEcccccc
Confidence 44689999999999999998876533 59999999999999999999 9999998 899999966655
No 94
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.88 E-value=0.0025 Score=61.08 Aligned_cols=77 Identities=21% Similarity=0.304 Sum_probs=57.3
Q ss_pred CcEEEEEEccCCcccCHH---HH--HHHHhccCCeeEEEEEcCCC-----CceE--EEEeCCHHHHHHHHHHhcCCeeCC
Q 024708 59 SNVLLASIENMQYAVTLD---VL--HMVFSAFGPVQKIAMFDKNG-----GLQA--LIQYPDVQTAVVAKEALEGHCIYD 126 (264)
Q Consensus 59 s~VL~V~~lN~~~~VT~d---~L--~~LFs~yG~V~rIkif~K~~-----g~~A--fVqF~d~e~A~~A~~~LnG~~I~g 126 (264)
-+.++|..+++ .-..|+ .| ++.|++||.|.||++-+|.. ..++ +|.|...|+|.+||...+|.-+.|
T Consensus 114 KNLvYVigi~p-kva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 114 KNLVYVIGIPP-KVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred cceeEEecCCC-CCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 34566666665 233444 34 47899999999998854430 1123 999999999999999999999999
Q ss_pred CccceEEEEeeeC
Q 024708 127 GGFCKLHISYSRH 139 (264)
Q Consensus 127 ~~~c~LrV~fSK~ 139 (264)
+ .|+..|-..
T Consensus 193 r---~lkatYGTT 202 (480)
T COG5175 193 R---VLKATYGTT 202 (480)
T ss_pred c---eEeeecCch
Confidence 8 888888644
No 95
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.85 E-value=0.0039 Score=59.70 Aligned_cols=58 Identities=17% Similarity=0.270 Sum_probs=49.2
Q ss_pred HHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEee
Q 024708 77 VLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 137 (264)
Q Consensus 77 ~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~fS 137 (264)
+|.+-+++||.|.+|+++.+...+-+.|.|.+.++|..|++.|+|..+.++ .|..+..
T Consensus 292 dl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgR---ql~A~i~ 349 (382)
T KOG1548|consen 292 DLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGR---QLTASIW 349 (382)
T ss_pred HHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecce---EEEEEEe
Confidence 345559999999999999765434699999999999999999999999998 7776654
No 96
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.84 E-value=0.0032 Score=63.06 Aligned_cols=73 Identities=22% Similarity=0.293 Sum_probs=56.0
Q ss_pred CCCcEEEEEEccCCcccCHH-------------HHHHHHhccCCeeEEEEEcC-------CCCceEEEEeCCHHHHHHHH
Q 024708 57 PESNVLLASIENMQYAVTLD-------------VLHMVFSAFGPVQKIAMFDK-------NGGLQALIQYPDVQTAVVAK 116 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d-------------~L~~LFs~yG~V~rIkif~K-------~~g~~AfVqF~d~e~A~~A~ 116 (264)
.++.||.+.|. ||++ +++.-+++||.|..|+|-+. -+-.+-||||.|.+++++|+
T Consensus 397 ~~t~Vl~L~n~-----Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~ 471 (500)
T KOG0120|consen 397 IPTEVLCLTNV-----VTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAM 471 (500)
T ss_pred Ccchhhhhhhc-----CCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHH
Confidence 56677776632 4443 35566899999999998332 12247999999999999999
Q ss_pred HHhcCCeeCCCccceEEEEee
Q 024708 117 EALEGHCIYDGGFCKLHISYS 137 (264)
Q Consensus 117 ~~LnG~~I~g~~~c~LrV~fS 137 (264)
+.|.|.++.++ ++...|-
T Consensus 472 ~~L~GrKF~nR---tVvtsYy 489 (500)
T KOG0120|consen 472 EELTGRKFANR---TVVASYY 489 (500)
T ss_pred HHccCceeCCc---EEEEEec
Confidence 99999999998 7777764
No 97
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.77 E-value=0.0081 Score=51.28 Aligned_cols=77 Identities=19% Similarity=0.292 Sum_probs=53.5
Q ss_pred CCCCcEEEEEEccCC---cccCH----HHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCc
Q 024708 56 EPESNVLLASIENMQ---YAVTL----DVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 128 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~---~~VT~----d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~ 128 (264)
.|+.-+++|++.+.. ..... +.|-+.|+.||+|.=|++... +-+|.|.+.++|.+|++ |+|.+|.|+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~----~mwVTF~dg~sALaals-~dg~~v~g~- 97 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD----TMWVTFRDGQSALAALS-LDGIQVNGR- 97 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT----CEEEEESSCHHHHHHHH-GCCSEETTE-
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC----eEEEEECccHHHHHHHc-cCCcEECCE-
Confidence 466778888887711 12333 367789999999998887752 58999999999998885 999999998
Q ss_pred cceEEEEeeeCC
Q 024708 129 FCKLHISYSRHT 140 (264)
Q Consensus 129 ~c~LrV~fSK~~ 140 (264)
.|+|....+.
T Consensus 98 --~l~i~LKtpd 107 (146)
T PF08952_consen 98 --TLKIRLKTPD 107 (146)
T ss_dssp --EEEEEE----
T ss_pred --EEEEEeCCcc
Confidence 8888765444
No 98
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.63 E-value=0.0053 Score=62.08 Aligned_cols=75 Identities=21% Similarity=0.354 Sum_probs=55.9
Q ss_pred CcEEEEEEccCCcccCHH----HHHHHHhccCCeeEEEE-EcCCCC--ceEEEEeCCHHHHHHHHHHhcCCeeCCCccce
Q 024708 59 SNVLLASIENMQYAVTLD----VLHMVFSAFGPVQKIAM-FDKNGG--LQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 131 (264)
Q Consensus 59 s~VL~V~~lN~~~~VT~d----~L~~LFs~yG~V~rIki-f~K~~g--~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~ 131 (264)
-.|++|-+.+.......+ .|..+|+++|.|.++.+ ++..++ +.+|++|++..+|+.|++.|||+.|.-+ ++
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn--Ht 135 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN--HT 135 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceeccc--ce
Confidence 467787766543333344 35689999999988876 343322 3699999999999999999999999876 56
Q ss_pred EEEE
Q 024708 132 LHIS 135 (264)
Q Consensus 132 LrV~ 135 (264)
+.|.
T Consensus 136 f~v~ 139 (698)
T KOG2314|consen 136 FFVR 139 (698)
T ss_pred EEee
Confidence 6664
No 99
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.53 E-value=0.0027 Score=64.38 Aligned_cols=87 Identities=25% Similarity=0.236 Sum_probs=68.2
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHh-ccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFS-AFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 135 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs-~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~ 135 (264)
..++||+|.+|- -+.|+-.|..|.. ..|.|....| +|-+ .+|||.|.+.++|...+.+|+|..--..+...|.|+
T Consensus 442 ~~SnvlhI~nLv--RPFTlgQLkelL~rtgg~Vee~Wm-DkIK-ShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 442 EPSNVLHIDNLV--RPFTLGQLKELLGRTGGNVEEFWM-DKIK-SHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred CccceEeeeccc--ccchHHHHHHHHhhccCchHHHHH-HHhh-cceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 568899999663 6899999999999 4556666544 2222 279999999999999999999988765556679999
Q ss_pred eeeCCCCceecC
Q 024708 136 YSRHTDLSIKVN 147 (264)
Q Consensus 136 fSK~~~l~vk~n 147 (264)
|....+|.-.++
T Consensus 518 f~~~deld~hr~ 529 (718)
T KOG2416|consen 518 FVRADELDKHRN 529 (718)
T ss_pred ecchhHHHHHhc
Confidence 998888765444
No 100
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=96.41 E-value=0.0072 Score=60.69 Aligned_cols=63 Identities=19% Similarity=0.169 Sum_probs=51.5
Q ss_pred HHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEeeeCCCC
Q 024708 76 DVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDL 142 (264)
Q Consensus 76 d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~fSK~~~l 142 (264)
|++.+-+++||.|..|.+- |+.-.+.||.|++.+.|..|+.+|||.++.++ .|.+.|-..+..
T Consensus 468 edV~Eec~k~g~v~hi~vd-~ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr---~Ita~~~~~~~Y 530 (549)
T KOG0147|consen 468 EDVIEECGKHGKVCHIFVD-KNSAGCVYVRCPSAEAAGTAVKALHGRWFAGR---MITAKYLPLERY 530 (549)
T ss_pred HHHHHHHHhcCCeeEEEEc-cCCCceEEEecCcHHHHHHHHHHHhhhhhccc---eeEEEEeehhhh
Confidence 3455667999999988764 44324799999999999999999999999999 999998766544
No 101
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.31 E-value=0.014 Score=41.30 Aligned_cols=51 Identities=16% Similarity=0.115 Sum_probs=37.1
Q ss_pred EEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHH
Q 024708 61 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAK 116 (264)
Q Consensus 61 VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~ 116 (264)
.|.|+.... .. .+.+..-|..||.|.++.+-.+. ..++|+|.+..+|+.|+
T Consensus 3 wI~V~Gf~~--~~-~~~vl~~F~~fGeI~~~~~~~~~--~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 3 WISVSGFPP--DL-AEEVLEHFASFGEIVDIYVPEST--NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEEeECc--hH-HHHHHHHHHhcCCEEEEEcCCCC--cEEEEEECCHHHHHhhC
Confidence 455665543 23 34555689999999998875333 26999999999999985
No 102
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.30 E-value=0.0086 Score=56.58 Aligned_cols=78 Identities=17% Similarity=0.230 Sum_probs=57.6
Q ss_pred CCcEEEEEEccCCcccCH---HHHHHHHhccCCeeEEEEEcCC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCCcc
Q 024708 58 ESNVLLASIENMQYAVTL---DVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGF 129 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~---d~L~~LFs~yG~V~rIkif~K~-----~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~ 129 (264)
+++||++.|.--...|.+ |++..-+.+||.|.+|.||.-. ...--||||+.+++|.+|+-.|||.-+.|+
T Consensus 280 ptkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr-- 357 (378)
T KOG1996|consen 280 PTKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGR-- 357 (378)
T ss_pred chHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecce--
Confidence 456666553321234443 5678889999999999998643 124589999999999999999999988887
Q ss_pred ceEEEEeee
Q 024708 130 CKLHISYSR 138 (264)
Q Consensus 130 c~LrV~fSK 138 (264)
.++..|-.
T Consensus 358 -~v~A~Fyn 365 (378)
T KOG1996|consen 358 -VVSACFYN 365 (378)
T ss_pred -eeeheecc
Confidence 66666643
No 103
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.29 E-value=0.024 Score=45.39 Aligned_cols=71 Identities=13% Similarity=0.042 Sum_probs=48.2
Q ss_pred EEEEEEccCCcccCHHHHHHHHhccCCeeEEE-------------EEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCC
Q 024708 61 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-------------MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 127 (264)
Q Consensus 61 VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIk-------------if~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~ 127 (264)
-+.|...+ .-..+.+-+.|++||+|++.. ++... . ---|+|++..+|++|+. -||..|.|.
T Consensus 8 wVtVFGfp---~~~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~-N-Wi~I~Y~~~~~A~rAL~-~NG~i~~g~ 81 (100)
T PF05172_consen 8 WVTVFGFP---PSASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGG-N-WIHITYDNPLSAQRALQ-KNGTIFSGS 81 (100)
T ss_dssp EEEEE------GGGHHHHHHHHHCCS-EECEEGGG----------E-CCT-T-EEEEEESSHHHHHHHHT-TTTEEETTC
T ss_pred EEEEEccC---HHHHHHHHHHHHhcceEEEeecccccccccccccCCCCC-C-EEEEECCCHHHHHHHHH-hCCeEEcCc
Confidence 34555554 345677788999999999885 33332 3 48899999999999997 599887775
Q ss_pred ccceEEEEeeeC
Q 024708 128 GFCKLHISYSRH 139 (264)
Q Consensus 128 ~~c~LrV~fSK~ 139 (264)
+.+-|.+.+.
T Consensus 82 --~mvGV~~~~~ 91 (100)
T PF05172_consen 82 --LMVGVKPCDP 91 (100)
T ss_dssp --EEEEEEE-HH
T ss_pred --EEEEEEEcHH
Confidence 5666777743
No 104
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.24 E-value=0.16 Score=49.22 Aligned_cols=79 Identities=18% Similarity=0.217 Sum_probs=58.0
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccC--CeeEEEEEcCC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccc
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFG--PVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 130 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG--~V~rIkif~K~-----~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c 130 (264)
..+.+.+++.|+-+.+|.++|-......| .+.+||+|+.+ +| .|||...+..+...-|+.|--..|.|.+
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG-~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~-- 153 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKG-YALLVLNSDAAVKQTMEILPTKTIHGQS-- 153 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccc-eEEEEecchHHHHHHHHhcccceecCCC--
Confidence 34566667777777777777776666666 56778888642 34 5999999999999999999999999983
Q ss_pred eEEEEeeeC
Q 024708 131 KLHISYSRH 139 (264)
Q Consensus 131 ~LrV~fSK~ 139 (264)
...+.|-|.
T Consensus 154 P~V~~~NK~ 162 (498)
T KOG4849|consen 154 PTVLSYNKT 162 (498)
T ss_pred Ceeeccchh
Confidence 445555554
No 105
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=96.16 E-value=0.0038 Score=65.44 Aligned_cols=67 Identities=21% Similarity=0.315 Sum_probs=56.8
Q ss_pred ccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEeeeCCC
Q 024708 72 AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 141 (264)
Q Consensus 72 ~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~fSK~~~ 141 (264)
..|-..|..||+.||.|..++.++.-+ .|+|+|...+.|..|.++|+|.++... --.-+|.|||.-.
T Consensus 309 ~~tSssL~~l~s~yg~v~s~wtlr~~N--~alvs~~s~~sai~a~dAl~gkevs~~-g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 309 NLTSSSLATLCSDYGSVASAWTLRDLN--MALVSFSSVESAILALDALQGKEVSVT-GAPSRVSFAKTLP 375 (1007)
T ss_pred cchHHHHHHHHHhhcchhhheeccccc--chhhhhHHHHHHHHhhhhhcCCccccc-CCceeEEeccccc
Confidence 456678999999999999999876543 799999999999999999999998754 2368999998754
No 106
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.15 E-value=0.003 Score=58.26 Aligned_cols=63 Identities=17% Similarity=0.281 Sum_probs=50.3
Q ss_pred HHHHHHHh-ccCCeeEEEEEcCCC---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEeeeCCC
Q 024708 76 DVLHMVFS-AFGPVQKIAMFDKNG---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 141 (264)
Q Consensus 76 d~L~~LFs-~yG~V~rIkif~K~~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~fSK~~~ 141 (264)
++||.-|+ +||.|+++++-+.-. ...++|+|...++|++|++.|||..+.|+ .|..+|+--+.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~---pi~ae~~pvT~ 149 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGR---PIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCC---cceeeecCcCc
Confidence 56777777 999999997632110 12699999999999999999999999998 88888875544
No 107
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=95.74 E-value=0.0052 Score=56.91 Aligned_cols=75 Identities=23% Similarity=0.308 Sum_probs=57.7
Q ss_pred cCCcccCHHHHHHHHhccCCeeEEEEEcC-----CCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEeeeCCCC
Q 024708 68 NMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDL 142 (264)
Q Consensus 68 N~~~~VT~d~L~~LFs~yG~V~rIkif~K-----~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~fSK~~~l 142 (264)
.+-.+||.|.|-..|.+|-..++-++.+. .++ ..||.|.|..++..|+..+||.-+..+ ...||-+-+|.+++
T Consensus 197 dlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkg-ygfVSf~~pad~~rAmrem~gkyVgsr-piklRkS~wkeRn~ 274 (290)
T KOG0226|consen 197 DLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKG-YGFVSFRDPADYVRAMREMNGKYVGSR-PIKLRKSEWKERNL 274 (290)
T ss_pred cccccccHHHHHHHHHhccchhhcccccccccccccc-ceeeeecCHHHHHHHHHhhcccccccc-hhHhhhhhHHhhhh
Confidence 33347999999999999999998885432 233 699999999999999999999988887 33455555555555
Q ss_pred ce
Q 024708 143 SI 144 (264)
Q Consensus 143 ~v 144 (264)
.+
T Consensus 275 dv 276 (290)
T KOG0226|consen 275 DV 276 (290)
T ss_pred HH
Confidence 44
No 108
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=95.49 E-value=0.017 Score=54.87 Aligned_cols=66 Identities=21% Similarity=0.330 Sum_probs=50.8
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcC-----CCCceEEEEeCCHHHHHHHHHH----hcCCeeCC
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEA----LEGHCIYD 126 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K-----~~g~~AfVqF~d~e~A~~A~~~----LnG~~I~g 126 (264)
....|+|..+. +++|++.|..-|+.||.|.+.++.+. +++ .+||+|++++....++.. |+|..|.-
T Consensus 5 ~~~KlfiGgis--w~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrg-Fgfv~f~~~~~v~~vl~~~~h~~dgr~ve~ 79 (311)
T KOG4205|consen 5 ESGKLFIGGLS--WETTEESLREYFSQFGEVTDCVVMRDPSTGRSRG-FGFVTFATPEGVDAVLNARTHKLDGRSVEP 79 (311)
T ss_pred CCcceeecCcC--ccccHHHHHHHhcccCceeeEEEeccCCCCCccc-ccceecCCCcchheeecccccccCCccccc
Confidence 35678888665 79999999999999999999997652 234 499999998887777654 55555543
No 109
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.47 E-value=0.035 Score=57.59 Aligned_cols=69 Identities=22% Similarity=0.391 Sum_probs=53.2
Q ss_pred EEEEEEccCCcccCHHHHHHHHhccCCeeE-EEE-EcCCC--CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEE
Q 024708 61 VLLASIENMQYAVTLDVLHMVFSAFGPVQK-IAM-FDKNG--GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 134 (264)
Q Consensus 61 VL~V~~lN~~~~VT~d~L~~LFs~yG~V~r-Iki-f~K~~--g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV 134 (264)
||-+. |.+++|+.++|-+.|+-|-.+-. |.+ ++.++ ..-|+|-|++.++|..|...|++++|..+ ++.+
T Consensus 869 V~~~~--n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr---~V~l 941 (944)
T KOG4307|consen 869 VLSCN--NFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNR---VVSL 941 (944)
T ss_pred EEEec--CCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccce---eEEE
Confidence 77766 55589999999999999965533 333 22221 13599999999999999999999999998 5544
No 110
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=95.33 E-value=0.074 Score=53.10 Aligned_cols=69 Identities=9% Similarity=0.117 Sum_probs=51.3
Q ss_pred cEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC--CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEE
Q 024708 60 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 135 (264)
Q Consensus 60 ~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~--~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~ 135 (264)
.++.+. -|+++.|+++|.+.|+-. +|+++++-+.+ ...-|||||++.|++++|++ +|...+-.+ -|.|-
T Consensus 11 ~~vr~r--GLPwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~R---YIEVf 81 (510)
T KOG4211|consen 11 FEVRLR--GLPWSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHR---YIEVF 81 (510)
T ss_pred eEEEec--CCCccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCc---eEEEE
Confidence 455555 455899999999999999 58888775542 12369999999999999997 465555555 45553
No 111
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=95.14 E-value=0.012 Score=54.46 Aligned_cols=66 Identities=20% Similarity=0.208 Sum_probs=54.5
Q ss_pred cEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEc---------CC-CC------ceEEEEeCCHHHHHHHHHHhcCCe
Q 024708 60 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD---------KN-GG------LQALIQYPDVQTAVVAKEALEGHC 123 (264)
Q Consensus 60 ~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~---------K~-~g------~~AfVqF~d~e~A~~A~~~LnG~~ 123 (264)
-|++++++++ ......|++||+.||.|-||-+-. ++ ++ .-++|||.+...|...-..|||..
T Consensus 75 GVvylS~IPp--~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 75 GVVYLSNIPP--YMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred eEEEeccCCC--ccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4888887664 899999999999999999998621 11 11 137899999999999999999999
Q ss_pred eCCC
Q 024708 124 IYDG 127 (264)
Q Consensus 124 I~g~ 127 (264)
|.|+
T Consensus 153 Iggk 156 (278)
T KOG3152|consen 153 IGGK 156 (278)
T ss_pred cCCC
Confidence 9998
No 112
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=95.12 E-value=0.032 Score=52.97 Aligned_cols=76 Identities=12% Similarity=0.173 Sum_probs=56.2
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEE-EcCC----CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAM-FDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIki-f~K~----~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
.++.++|..+. ..+++++|++-|.+||.|.++.+ +++. ++| +||+|.+.+.+.++.. ..-+.|.++ +|
T Consensus 96 ~tkkiFvGG~~--~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgF-gfv~~~~e~sVdkv~~-~~f~~~~gk-~v-- 168 (311)
T KOG4205|consen 96 RTKKIFVGGLP--PDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGF-GFVTFDSEDSVDKVTL-QKFHDFNGK-KV-- 168 (311)
T ss_pred ceeEEEecCcC--CCCchHHHhhhhhccceeEeeEEeecccccccccc-eeeEeccccccceecc-cceeeecCc-ee--
Confidence 35678887554 69999999999999999999874 4432 355 9999999987777664 577788888 44
Q ss_pred EEEeeeCC
Q 024708 133 HISYSRHT 140 (264)
Q Consensus 133 rV~fSK~~ 140 (264)
.|.-+-..
T Consensus 169 evkrA~pk 176 (311)
T KOG4205|consen 169 EVKRAIPK 176 (311)
T ss_pred eEeeccch
Confidence 44444333
No 113
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.96 E-value=0.11 Score=44.80 Aligned_cols=74 Identities=19% Similarity=0.327 Sum_probs=53.0
Q ss_pred CCCCcEEEEEEccCCcccCH--HHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEE
Q 024708 56 EPESNVLLASIENMQYAVTL--DVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 133 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~--d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~Lr 133 (264)
.++-.+|.|.-+.-.-.-++ ..+..-.+.||.|+.|....+. .|.|.|.|..+|-+|+.+... ..-|. .++
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq---savVvF~d~~SAC~Av~Af~s-~~pgt---m~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ---SAVVVFKDITSACKAVSAFQS-RAPGT---MFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc---eEEEEehhhHHHHHHHHhhcC-CCCCc---eEE
Confidence 46667777766432112333 3455668999999999988654 699999999999999999986 44454 555
Q ss_pred EEe
Q 024708 134 ISY 136 (264)
Q Consensus 134 V~f 136 (264)
.+|
T Consensus 156 CsW 158 (166)
T PF15023_consen 156 CSW 158 (166)
T ss_pred eec
Confidence 555
No 114
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=94.89 E-value=0.024 Score=56.88 Aligned_cols=80 Identities=19% Similarity=0.218 Sum_probs=63.4
Q ss_pred EEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC----CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEee
Q 024708 62 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 137 (264)
Q Consensus 62 L~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~----~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~fS 137 (264)
++|+++ +..++++.+.++.+.||.++-..++..+ ...+||.+|-|......|+..|||..+.++ .|.|..+
T Consensus 292 i~v~~l--p~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~---~lvvq~A 366 (500)
T KOG0120|consen 292 IFVGGL--PLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDK---KLVVQRA 366 (500)
T ss_pred hhhccC--cCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCc---eeEeehh
Confidence 445544 4689999999999999999887765322 123699999999999999999999999998 9999887
Q ss_pred eCCCCceec
Q 024708 138 RHTDLSIKV 146 (264)
Q Consensus 138 K~~~l~vk~ 146 (264)
-....++..
T Consensus 367 ~~g~~~~~~ 375 (500)
T KOG0120|consen 367 IVGASNANV 375 (500)
T ss_pred hccchhccc
Confidence 666544433
No 115
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.52 E-value=0.1 Score=49.57 Aligned_cols=62 Identities=21% Similarity=0.199 Sum_probs=48.3
Q ss_pred EEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCC
Q 024708 62 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 127 (264)
Q Consensus 62 L~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~ 127 (264)
-||++... ..-....|-++|++||+|+|.+.- .++.+ -.|.|.+..+|++|+. -||..|.+.
T Consensus 198 ~WVTVfGF-ppg~~s~vL~~F~~cG~Vvkhv~~-~ngNw-MhirYssr~~A~KALs-kng~ii~g~ 259 (350)
T KOG4285|consen 198 TWVTVFGF-PPGQVSIVLNLFSRCGEVVKHVTP-SNGNW-MHIRYSSRTHAQKALS-KNGTIIDGD 259 (350)
T ss_pred ceEEEecc-CccchhHHHHHHHhhCeeeeeecC-CCCce-EEEEecchhHHHHhhh-hcCeeeccc
Confidence 45565554 356677889999999999998876 44344 8899999999999997 588777764
No 116
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.52 E-value=0.15 Score=39.96 Aligned_cols=57 Identities=16% Similarity=0.277 Sum_probs=43.4
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcC
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG 121 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG 121 (264)
...|.+|+-- ..--..+|.+||+.||.|. |.-++.. .|||...+.++|..|+..++-
T Consensus 8 RdHVFhltFP---keWK~~DI~qlFspfG~I~-VsWi~dT---SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 8 RDHVFHLTFP---KEWKTSDIYQLFSPFGQIY-VSWINDT---SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp GCCEEEEE-----TT--HHHHHHHCCCCCCEE-EEEECTT---EEEEEECCCHHHHHHHHHHTT
T ss_pred cceEEEEeCc---hHhhhhhHHHHhccCCcEE-EEEEcCC---cEEEEeecHHHHHHHHHHhcc
Confidence 3568998832 4677899999999999985 4434433 799999999999999999974
No 117
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=94.37 E-value=0.029 Score=52.53 Aligned_cols=76 Identities=13% Similarity=0.226 Sum_probs=61.2
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~-----~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
...+++|.+++ +.++.|+|+..|..+|.|.+|++-+.. ++ .|+|+|.+...+..|+.. +...|++. ++
T Consensus 184 s~~~~~~~~~~--f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg-~a~~~~~~~~~~~~~~~~-~~~~~~~~---~~ 256 (285)
T KOG4210|consen 184 SDTIFFVGELD--FSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKG-FAYVDFSAGNSKKLALND-QTRSIGGR---PL 256 (285)
T ss_pred cccceeecccc--cccchHHHhhhccCcCcceeeccCCCCCccchhh-hhhhhhhhchhHHHHhhc-ccCcccCc---cc
Confidence 33455577655 699999999999999999999974332 23 389999999999999998 89999988 88
Q ss_pred EEEeeeCC
Q 024708 133 HISYSRHT 140 (264)
Q Consensus 133 rV~fSK~~ 140 (264)
+|++.+..
T Consensus 257 ~~~~~~~~ 264 (285)
T KOG4210|consen 257 RLEEDEPR 264 (285)
T ss_pred ccccCCCC
Confidence 88877654
No 118
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.35 E-value=0.059 Score=57.12 Aligned_cols=80 Identities=19% Similarity=0.193 Sum_probs=66.2
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEE
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 135 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~ 135 (264)
..+++-|+|..+.+ .+....|...|..||.|..|.+- +. ..+|+|+|++...|+.|+..|-|..|-+. ...|+|+
T Consensus 452 st~ttr~~sgglg~--w~p~~~l~r~fd~fGpir~Idy~-hg-q~yayi~yes~~~aq~a~~~~rgap~G~P-~~r~rvd 526 (975)
T KOG0112|consen 452 STPTTRLQSGGLGP--WSPVSRLNREFDRFGPIRIIDYR-HG-QPYAYIQYESPPAAQAATHDMRGAPLGGP-PRRLRVD 526 (975)
T ss_pred cccceeeccCCCCC--CChHHHHHHHhhccCcceeeecc-cC-CcceeeecccCccchhhHHHHhcCcCCCC-Ccccccc
Confidence 34566777776654 78889999999999999988763 33 34799999999999999999999998876 5689999
Q ss_pred eeeCC
Q 024708 136 YSRHT 140 (264)
Q Consensus 136 fSK~~ 140 (264)
|++..
T Consensus 527 la~~~ 531 (975)
T KOG0112|consen 527 LASPP 531 (975)
T ss_pred cccCC
Confidence 99764
No 119
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.21 E-value=0.21 Score=36.80 Aligned_cols=53 Identities=21% Similarity=0.229 Sum_probs=42.5
Q ss_pred EEEEEEccCCcccCHHHHHHHHhcc---CCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHh
Q 024708 61 VLLASIENMQYAVTLDVLHMVFSAF---GPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL 119 (264)
Q Consensus 61 VL~V~~lN~~~~VT~d~L~~LFs~y---G~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~L 119 (264)
.|+|...+ .++.++++..|..| ....+|.-++.. .|-|.|.|.+.|.+|+.+|
T Consensus 7 avhirGvd---~lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 7 AVHIRGVD---ELSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eEEEEcCC---CCCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 56777653 79999999999999 235577756654 5899999999999999876
No 120
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=92.63 E-value=0.8 Score=36.51 Aligned_cols=79 Identities=18% Similarity=0.153 Sum_probs=54.4
Q ss_pred cEEEEEEccCCcccCHHHHHHHHhcc--CCeeEEEE---Ec-CCCCceEEEEeCCHHHHHHHHHHhcCCeeCCC-ccceE
Q 024708 60 NVLLASIENMQYAVTLDVLHMVFSAF--GPVQKIAM---FD-KNGGLQALIQYPDVQTAVVAKEALEGHCIYDG-GFCKL 132 (264)
Q Consensus 60 ~VL~V~~lN~~~~VT~d~L~~LFs~y--G~V~rIki---f~-K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~-~~c~L 132 (264)
.+|+|.|++ ...|.++|.+++... |...=+-+ |. +.+-++|||-|.+++.|..-.+..+|.+.... +.+..
T Consensus 2 TTvMirNIP--n~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc 79 (97)
T PF04059_consen 2 TTVMIRNIP--NKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVC 79 (97)
T ss_pred eeEEEecCC--CCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEE
Confidence 468888664 589999988887653 22221222 22 22235799999999999999999999988522 12355
Q ss_pred EEEeeeCC
Q 024708 133 HISYSRHT 140 (264)
Q Consensus 133 rV~fSK~~ 140 (264)
.|.||+.+
T Consensus 80 ~i~yAriQ 87 (97)
T PF04059_consen 80 EISYARIQ 87 (97)
T ss_pred EEehhHhh
Confidence 78898765
No 121
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=92.63 E-value=0.15 Score=50.04 Aligned_cols=64 Identities=17% Similarity=0.336 Sum_probs=50.6
Q ss_pred EEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCC-------CceEEEEeCCHHHHHHHHHHhcCCeeCCC
Q 024708 61 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG-------GLQALIQYPDVQTAVVAKEALEGHCIYDG 127 (264)
Q Consensus 61 VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~-------g~~AfVqF~d~e~A~~A~~~LnG~~I~g~ 127 (264)
||.|.|+.+ .+|.|.+++||+-.|.|..+.+|..-+ .-.|||.|.|...+.+|- +|.+..+-+.
T Consensus 9 vIqvanisp--sat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdr 79 (479)
T KOG4676|consen 9 VIQVANISP--SATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDR 79 (479)
T ss_pred eeeecccCc--hhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeee
Confidence 888887664 899999999999999999999875211 136999999998888665 6766666653
No 122
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=91.77 E-value=0.41 Score=47.97 Aligned_cols=74 Identities=14% Similarity=0.100 Sum_probs=51.2
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcC----CCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEE
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 133 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K----~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~Lr 133 (264)
...|+.+..|+ +.+|+++|.+.|+--=-|-+..++.+ +...-|||||++.+.|+.|+.. +..+|-.+ -|.
T Consensus 102 ~d~vVRLRGLP--fscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhR---YIE 175 (510)
T KOG4211|consen 102 NDGVVRLRGLP--FSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHR---YIE 175 (510)
T ss_pred CCceEEecCCC--ccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccc---eEE
Confidence 45688888765 79999999999998855554232221 1224699999999999999974 44455544 455
Q ss_pred EEee
Q 024708 134 ISYS 137 (264)
Q Consensus 134 V~fS 137 (264)
|--|
T Consensus 176 vF~S 179 (510)
T KOG4211|consen 176 VFRS 179 (510)
T ss_pred eehh
Confidence 5433
No 123
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.69 E-value=1.8 Score=35.25 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=45.1
Q ss_pred CCcccCHHHHHHHHhccCCe-eEEEEEcCC--CCceEEEEeCCHHHHHHHHHHhcCCeeCC
Q 024708 69 MQYAVTLDVLHMVFSAFGPV-QKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYD 126 (264)
Q Consensus 69 ~~~~VT~d~L~~LFs~yG~V-~rIkif~K~--~g~~AfVqF~d~e~A~~A~~~LnG~~I~g 126 (264)
+.+.++.+.|..+.+.+-.. ..++|.+.. +.+.+||+|.|.++|..=....||+.+..
T Consensus 21 p~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 21 PPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34788899998887777644 455666543 24679999999999999999999998753
No 124
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.29 E-value=0.078 Score=50.62 Aligned_cols=72 Identities=18% Similarity=0.210 Sum_probs=52.9
Q ss_pred EEEEEccCCcccCHHHHH--HHHhccCCeeEEEEEcCC------C-CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 62 LLASIENMQYAVTLDVLH--MVFSAFGPVQKIAMFDKN------G-GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 62 L~V~~lN~~~~VT~d~L~--~LFs~yG~V~rIkif~K~------~-g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
.+|..+++ ..-.++.|. .-|++||.|.+|.++++. . .-.++|.|+..++|..||+..+|..+.++ .|
T Consensus 80 vyvvgl~~-~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~---~l 155 (327)
T KOG2068|consen 80 VYVVGLPL-DLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGR---AL 155 (327)
T ss_pred hhhhCCCc-cccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhh---hh
Confidence 34444444 235566666 569999999999988643 1 13589999999999999999999988887 45
Q ss_pred EEEee
Q 024708 133 HISYS 137 (264)
Q Consensus 133 rV~fS 137 (264)
+..|.
T Consensus 156 ka~~g 160 (327)
T KOG2068|consen 156 KASLG 160 (327)
T ss_pred HHhhC
Confidence 55544
No 125
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=91.14 E-value=1.3 Score=32.95 Aligned_cols=67 Identities=19% Similarity=0.276 Sum_probs=40.5
Q ss_pred EEEEEccCCcccCHHHHHHHHhccCCee-----EEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEe
Q 024708 62 LLASIENMQYAVTLDVLHMVFSAFGPVQ-----KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 136 (264)
Q Consensus 62 L~V~~lN~~~~VT~d~L~~LFs~yG~V~-----rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~f 136 (264)
|+|...-- ..++..+|-.+++.-+.|. +|.|+++ .+||+-... .|..+++.|++.++.++ +++|+.
T Consensus 3 l~in~Gr~-dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~----~S~vev~~~-~a~~v~~~l~~~~~~gk---~v~ve~ 73 (74)
T PF03880_consen 3 LFINVGRK-DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN----FSFVEVPEE-VAEKVLEALNGKKIKGK---KVRVER 73 (74)
T ss_dssp EEES-SGG-GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----EEEEE-TT--HHHHHHHHTT--SSS-------EEE
T ss_pred EEEEcccc-cCCCHHHHHHHHHhccCCCHHhEEEEEEeee----EEEEEECHH-HHHHHHHHhcCCCCCCe---eEEEEE
Confidence 55555443 5899999998888876554 6667653 599998766 68899999999999999 888875
Q ss_pred e
Q 024708 137 S 137 (264)
Q Consensus 137 S 137 (264)
+
T Consensus 74 A 74 (74)
T PF03880_consen 74 A 74 (74)
T ss_dssp -
T ss_pred C
Confidence 3
No 126
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=89.23 E-value=2.8 Score=44.72 Aligned_cols=10 Identities=40% Similarity=0.537 Sum_probs=4.2
Q ss_pred CCcCCCCcCC
Q 024708 197 PMMHQPTAAG 206 (264)
Q Consensus 197 ~~~~~~~~~~ 206 (264)
+..++|.++|
T Consensus 546 ppPPlpggag 555 (1102)
T KOG1924|consen 546 PPPPLPGGAG 555 (1102)
T ss_pred CCCCCCCCCC
Confidence 3344444444
No 127
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=88.04 E-value=0.69 Score=43.10 Aligned_cols=66 Identities=15% Similarity=0.196 Sum_probs=51.4
Q ss_pred CcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEE-cCC--CCceEEEEeCCHHHHHHHHHHhcCCeeCC
Q 024708 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF-DKN--GGLQALIQYPDVQTAVVAKEALEGHCIYD 126 (264)
Q Consensus 59 s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif-~K~--~g~~AfVqF~d~e~A~~A~~~LnG~~I~g 126 (264)
...|.|.|++. .|+.|.|.+-|+.||.|.+-++. +.. .....+|+|...-.|.+|+..++-.-+.+
T Consensus 31 ~a~l~V~nl~~--~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~ 99 (275)
T KOG0115|consen 31 HAELYVVNLMQ--GASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGG 99 (275)
T ss_pred cceEEEEecch--hhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCcccc
Confidence 47899998874 89999999999999999987753 321 12358999999999999999885444443
No 128
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=87.49 E-value=0.13 Score=54.69 Aligned_cols=69 Identities=16% Similarity=0.170 Sum_probs=58.5
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcC---CCCceEEEEeCCHHHHHHHHHHhcCCeeCCC
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK---NGGLQALIQYPDVQTAVVAKEALEGHCIYDG 127 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K---~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~ 127 (264)
-.+.+|++.++. ..+++.+|..+|..||.|.+|.|-.. .+..+|||-|.+...|-.|+..|.+..|-.+
T Consensus 370 ~atrTLf~Gnl~--~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g 441 (975)
T KOG0112|consen 370 RATRTLFLGNLD--SKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNG 441 (975)
T ss_pred hhhhhhhhcCcc--cchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccC
Confidence 357899999766 48999999999999999999987432 2234799999999999999999999998877
No 129
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=85.16 E-value=3.1 Score=30.98 Aligned_cols=56 Identities=18% Similarity=0.301 Sum_probs=44.8
Q ss_pred cccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEE
Q 024708 71 YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 134 (264)
Q Consensus 71 ~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV 134 (264)
..++.++++..+..|+ -.+|.. ++. | =+|.|.|.++|+++....||..+++- +|.+
T Consensus 10 ~~~~v~d~K~~Lr~y~-~~~I~~-d~t-G--fYIvF~~~~Ea~rC~~~~~~~~~f~y---~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYR-WDRIRD-DRT-G--FYIVFNDSKEAERCFRAEDGTLFFTY---RMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCC-cceEEe-cCC-E--EEEEECChHHHHHHHHhcCCCEEEEE---EEEe
Confidence 3789999999999996 455543 333 4 47999999999999999999999875 5544
No 130
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.74 E-value=6.5 Score=40.52 Aligned_cols=78 Identities=21% Similarity=0.335 Sum_probs=59.7
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhcc----CCeeEEEEEc----CC--------CC---------------------
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAF----GPVQKIAMFD----KN--------GG--------------------- 99 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~y----G~V~rIkif~----K~--------~g--------------------- 99 (264)
..++-|-|.|..- ..|...+|+-||+.| |.|++|+|+. |. +.
T Consensus 172 ~~T~RLAVvNMDW-d~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 172 EETKRLAVVNMDW-DRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred cccceeeEecccc-ccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 4567777776654 479999999888865 5999999843 10 01
Q ss_pred ------------------ceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEe
Q 024708 100 ------------------LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 136 (264)
Q Consensus 100 ------------------~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~f 136 (264)
.+|.|+|.+++.|......-+|..+... |..|-+.|
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS-~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS-ANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc-cceeeeee
Confidence 3699999999999999999999998776 55666665
No 131
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=80.25 E-value=1.2 Score=44.26 Aligned_cols=74 Identities=24% Similarity=0.180 Sum_probs=52.8
Q ss_pred EEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCe-eCCCccceEEEEeeeC
Q 024708 61 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC-IYDGGFCKLHISYSRH 139 (264)
Q Consensus 61 VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~-I~g~~~c~LrV~fSK~ 139 (264)
.|++.+|+ ..++.++|..+|..----..=.++-|.+ +|||.+.|...|-+|++.|+|.. +.|+ ++.|++|-.
T Consensus 3 klyignL~--p~~~psdl~svfg~ak~~~~g~fl~k~g--yafvd~pdq~wa~kaie~~sgk~elqGk---r~e~~~sv~ 75 (584)
T KOG2193|consen 3 KLYIGNLS--PQVTPSDLESVFGDAKIPGSGQFLVKSG--YAFVDCPDQQWANKAIETLSGKVELQGK---RQEVEHSVP 75 (584)
T ss_pred cccccccC--CCCChHHHHHHhccccCCCCcceeeecc--eeeccCCchhhhhhhHHhhchhhhhcCc---eeeccchhh
Confidence 35666665 5899999999998761111111233442 79999999999999999999964 4555 888988754
Q ss_pred CC
Q 024708 140 TD 141 (264)
Q Consensus 140 ~~ 141 (264)
..
T Consensus 76 kk 77 (584)
T KOG2193|consen 76 KK 77 (584)
T ss_pred HH
Confidence 43
No 132
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=78.97 E-value=6.1 Score=39.07 Aligned_cols=56 Identities=11% Similarity=0.176 Sum_probs=40.8
Q ss_pred EEEEEccCCcccCHHHHHHHHh---c-cCCeeEEEEEcCCC---CceEEEEeCCHHHHHHHHH
Q 024708 62 LLASIENMQYAVTLDVLHMVFS---A-FGPVQKIAMFDKNG---GLQALIQYPDVQTAVVAKE 117 (264)
Q Consensus 62 L~V~~lN~~~~VT~d~L~~LFs---~-yG~V~rIkif~K~~---g~~AfVqF~d~e~A~~A~~ 117 (264)
+.|....++++.|+.++.+.|. . -|.++.|.+.++.+ ..-|||.|+..++|+.|+.
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~ 224 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR 224 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH
Confidence 3344445668999999999995 2 34677777655421 1359999999999999976
No 133
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=77.51 E-value=28 Score=32.57 Aligned_cols=44 Identities=32% Similarity=0.523 Sum_probs=25.0
Q ss_pred CCCCCCCCCCCCcCCCCcCCCCCCCCCCCCcCCCCCCCCCCCCCCC
Q 024708 187 AQFAPPPPEQPMMHQPTAAGWGAVPPASQSMPMMGNHPYMPPGSMP 232 (264)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (264)
..||.+|-...++.-+---|. -|+..++-+.|.-..|||++-||
T Consensus 138 ~~~gmpp~p~~~~~p~gmp~~--~ppp~g~pp~~~pgv~mp~~g~p 181 (341)
T KOG2893|consen 138 MAYGMPPMPSGMMPPRGMPGA--YPPPRGYPPAPAPGVYMPPPGMP 181 (341)
T ss_pred cccCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCccccCCCCCC
Confidence 678866644444432221111 14556666777778888777665
No 134
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=77.40 E-value=1.9 Score=45.99 Aligned_cols=75 Identities=13% Similarity=0.059 Sum_probs=57.4
Q ss_pred cEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEc-CC--CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEe
Q 024708 60 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD-KN--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 136 (264)
Q Consensus 60 ~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~-K~--~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~f 136 (264)
..|+|++ +++.-|.++|..||+.+|+|.++.+.. +. ....|+|.|.+..+|..+....++..+... .+.|..
T Consensus 737 ~~v~i~g--~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~---~~~v~v 811 (881)
T KOG0128|consen 737 ISVAISG--PPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKREN---NGEVQV 811 (881)
T ss_pred hhhheeC--CCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhc---Cccccc
Confidence 4555554 447999999999999999999987432 22 113699999999999999999998887776 666665
Q ss_pred eeC
Q 024708 137 SRH 139 (264)
Q Consensus 137 SK~ 139 (264)
|..
T Consensus 812 snp 814 (881)
T KOG0128|consen 812 SNP 814 (881)
T ss_pred cCC
Confidence 544
No 135
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=73.34 E-value=4.4 Score=40.04 Aligned_cols=79 Identities=14% Similarity=0.169 Sum_probs=54.8
Q ss_pred CcEEEEEEccCCcccCHHHHHHHHhccCCeeEE---EE-EcCCC--CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI---AM-FDKNG--GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 59 s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rI---ki-f~K~~--g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
..+|++..+. |..|.++|-+.|..|-.-++. .+ ++..+ ..-|||||.+.|.|..|...-+......+ -|
T Consensus 280 kdcvRLRGLP--y~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~R---Yi 354 (508)
T KOG1365|consen 280 KDCVRLRGLP--YEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSR---YI 354 (508)
T ss_pred CCeeEecCCC--hhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccc---eE
Confidence 4577877664 899999999999988765554 33 33321 23699999999999999888776655454 45
Q ss_pred EEEeeeCCCC
Q 024708 133 HISYSRHTDL 142 (264)
Q Consensus 133 rV~fSK~~~l 142 (264)
.|--+...++
T Consensus 355 Evfp~S~eel 364 (508)
T KOG1365|consen 355 EVFPCSVEEL 364 (508)
T ss_pred EEeeccHHHH
Confidence 5544444443
No 136
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=72.00 E-value=11 Score=37.91 Aligned_cols=67 Identities=18% Similarity=0.178 Sum_probs=49.7
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhcc-CCeeEEEEEcCC--CCceEEEEeCCHHHHHHHHHHhcCCeeCC
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAF-GPVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYD 126 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~y-G~V~rIkif~K~--~g~~AfVqF~d~e~A~~A~~~LnG~~I~g 126 (264)
++.+|.|.-.+ -.+|..+|-.....| -.|..|+|+++. +.+.+||.|.+.++|..=.+.+||..+..
T Consensus 73 ~~~mLcilaVP--~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVP--AYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEecc--ccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 36777776554 367776665554443 357788887643 34789999999999999999999998753
No 137
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=70.98 E-value=30 Score=37.31 Aligned_cols=17 Identities=41% Similarity=0.692 Sum_probs=8.7
Q ss_pred CCCCCCCCCCCCcCCCCcCC
Q 024708 187 AQFAPPPPEQPMMHQPTAAG 206 (264)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~ 206 (264)
||=|||| |..++|-.+|
T Consensus 552 ggag~PP---PPpplPg~aG 568 (1102)
T KOG1924|consen 552 GGAGPPP---PPPPLPGIAG 568 (1102)
T ss_pred CCCCCCc---cCCCCCcccC
Confidence 5555555 3444555555
No 138
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=70.93 E-value=10 Score=38.48 Aligned_cols=59 Identities=17% Similarity=0.227 Sum_probs=47.6
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHh-ccCCeeEEEEEcC-----CCCceEEEEeCCHHHHHHHHHH
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFS-AFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEA 118 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs-~yG~V~rIkif~K-----~~g~~AfVqF~d~e~A~~A~~~ 118 (264)
-+.+++||..++ -.+|-++|..||+ .||.|.-+-|=.. .+| .+=|.|++..+=.+||.+
T Consensus 368 DprrTVFVGgvp--rpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkG-aGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLP--RPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKG-AGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCC--CcchHHHHHHHHHHhcCceEEEEeccCcccCCCCC-cceeeecccHHHHHHHhh
Confidence 467899999775 5899999999999 9999998877322 123 588999999888888874
No 139
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=70.07 E-value=8.3 Score=36.71 Aligned_cols=77 Identities=18% Similarity=0.305 Sum_probs=53.8
Q ss_pred CcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC-----------CCceEEEEeCCHHHHHH----HHHHhcC--
Q 024708 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----------GGLQALIQYPDVQTAVV----AKEALEG-- 121 (264)
Q Consensus 59 s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~-----------~g~~AfVqF~d~e~A~~----A~~~LnG-- 121 (264)
++-|++.|++ ..++...+-+.|-+||.|+.|.+|.++ .....++.|-+.+.+.. .++.|.-
T Consensus 15 TRSLLfeNv~--~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 15 TRSLLFENVN--NSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred eHHHHHhhcc--ccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 5667777665 589999999999999999999988654 11368899998876654 2223332
Q ss_pred CeeCCCccceEEEEeeeCC
Q 024708 122 HCIYDGGFCKLHISYSRHT 140 (264)
Q Consensus 122 ~~I~g~~~c~LrV~fSK~~ 140 (264)
..+... .|+|+|....
T Consensus 93 ~~L~S~---~L~lsFV~l~ 108 (309)
T PF10567_consen 93 TKLKSE---SLTLSFVSLN 108 (309)
T ss_pred HhcCCc---ceeEEEEEEe
Confidence 223344 7888887654
No 140
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=66.92 E-value=7.6 Score=41.03 Aligned_cols=72 Identities=13% Similarity=0.211 Sum_probs=50.5
Q ss_pred EEEEEEccCCcccCHHHHHHHHhccCCee--EEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEeee
Q 024708 61 VLLASIENMQYAVTLDVLHMVFSAFGPVQ--KIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 138 (264)
Q Consensus 61 VL~V~~lN~~~~VT~d~L~~LFs~yG~V~--rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~fSK 138 (264)
||++.+|. .....-+|++.||-- +|- -|.|+-...| -|||-|++.|+|..||.. ++..|.+. .+++-.|.
T Consensus 4 IIRLqnLP--~tAga~DIR~FFSGL-~IPdGgVHIIGGe~G-eaFI~FsTDeDARlaM~k-dr~~i~g~---~VrLlLSS 75 (944)
T KOG4307|consen 4 IIRLQNLP--MTAGASDIRTFFSGL-KIPDGGVHIIGGEEG-EAFIGFSTDEDARLAMTK-DRLMIHGA---EVRLLLSS 75 (944)
T ss_pred EEEecCCc--ccccchHHHHhhccc-ccCCCceEEeccccc-ceEEEecccchhhhhhhh-cccceecc---eEEEEecc
Confidence 56666554 467778999999854 121 1345544434 599999999999999974 78888887 67766664
Q ss_pred CC
Q 024708 139 HT 140 (264)
Q Consensus 139 ~~ 140 (264)
..
T Consensus 76 ks 77 (944)
T KOG4307|consen 76 KS 77 (944)
T ss_pred HH
Confidence 43
No 141
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=63.97 E-value=5.7 Score=40.05 Aligned_cols=64 Identities=17% Similarity=0.252 Sum_probs=49.7
Q ss_pred ccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEeeeCCC
Q 024708 72 AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 141 (264)
Q Consensus 72 ~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~fSK~~~ 141 (264)
--|..+|-..|.+||.|+.|.+-... ..|.|.|.+..+|-.|-. -.+..|.++ -|+|-|-+...
T Consensus 384 lnt~a~ln~hfA~fG~i~n~qv~~~~--~~a~vTF~t~aeag~a~~-s~~avlnnr---~iKl~whnps~ 447 (526)
T KOG2135|consen 384 LNTIADLNPHFAQFGEIENIQVDYSS--LHAVVTFKTRAEAGEAYA-SHGAVLNNR---FIKLFWHNPSP 447 (526)
T ss_pred CchHhhhhhhhhhcCccccccccCch--hhheeeeeccccccchhc-cccceecCc---eeEEEEecCCc
Confidence 34667899999999999999874332 379999999999966654 477888888 78888766543
No 142
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=59.82 E-value=63 Score=31.89 Aligned_cols=15 Identities=33% Similarity=0.605 Sum_probs=7.4
Q ss_pred CCCCCCcCCCCCCCC
Q 024708 211 PPASQSMPMMGNHPY 225 (264)
Q Consensus 211 ~~~~~~~~~~~~~~~ 225 (264)
|++..-+|+-|+|++
T Consensus 304 ppPga~pPaph~Npa 318 (498)
T KOG4849|consen 304 PPPGAGPPAPHNNPA 318 (498)
T ss_pred CCCCCCCCCcccCcc
Confidence 444444555555543
No 143
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=56.46 E-value=35 Score=29.68 Aligned_cols=81 Identities=10% Similarity=0.112 Sum_probs=50.7
Q ss_pred cEEEEEEccCCcccCHHHHHHHHhc-cCCe---eEEEE-EcCC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCCc-
Q 024708 60 NVLLASIENMQYAVTLDVLHMVFSA-FGPV---QKIAM-FDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGG- 128 (264)
Q Consensus 60 ~VL~V~~lN~~~~VT~d~L~~LFs~-yG~V---~rIki-f~K~-----~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~- 128 (264)
.-|.|..|+ ..+|++++.+..+. ++.- ..+.- ..+. .---|+|.|.+.+++..=++.++|+.+.+.-
T Consensus 8 ~KvVIR~LP--P~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 8 TKVVIRRLP--PNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp -EEEEEEE---TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred ceEEEeCCC--CCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 356677666 49999999998887 7766 23321 1111 1125999999999999999999998876541
Q ss_pred -cceEEEEeeeCCCC
Q 024708 129 -FCKLHISYSRHTDL 142 (264)
Q Consensus 129 -~c~LrV~fSK~~~l 142 (264)
...-.|+||--+.+
T Consensus 86 ~~~~~~VE~Apyqk~ 100 (176)
T PF03467_consen 86 NEYPAVVEFAPYQKV 100 (176)
T ss_dssp -EEEEEEEE-SS---
T ss_pred CCcceeEEEcchhcc
Confidence 23567888876655
No 144
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=56.31 E-value=0.85 Score=45.38 Aligned_cols=77 Identities=17% Similarity=0.271 Sum_probs=56.5
Q ss_pred CcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEc-CCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEee
Q 024708 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD-KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 137 (264)
Q Consensus 59 s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~-K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~fS 137 (264)
++-+-+. |++...--++|+.|...||+|+.+.... ....-.--|+|...++++.|+..|||..+... .++|.|-
T Consensus 80 srk~Qir--nippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~---~~k~~Yi 154 (584)
T KOG2193|consen 80 SRKIQIR--NIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQ---HLKVGYI 154 (584)
T ss_pred hhhhhHh--cCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhh---hhhcccC
Confidence 3444455 4444677889999999999999886432 22211233689999999999999999999988 8888875
Q ss_pred eCC
Q 024708 138 RHT 140 (264)
Q Consensus 138 K~~ 140 (264)
-..
T Consensus 155 Pde 157 (584)
T KOG2193|consen 155 PDE 157 (584)
T ss_pred chh
Confidence 443
No 145
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.16 E-value=1.5e+02 Score=30.10 Aligned_cols=12 Identities=50% Similarity=1.032 Sum_probs=7.7
Q ss_pred HHHHHhccCCee
Q 024708 78 LHMVFSAFGPVQ 89 (264)
Q Consensus 78 L~~LFs~yG~V~ 89 (264)
|=.||..||.|.
T Consensus 247 lG~I~EiFGpV~ 258 (483)
T KOG2236|consen 247 LGQIFEIFGPVK 258 (483)
T ss_pred chhhhhhhcccC
Confidence 456677777664
No 146
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=53.33 E-value=2.8 Score=39.86 Aligned_cols=68 Identities=25% Similarity=0.465 Sum_probs=46.9
Q ss_pred cCHHHHHHHHhccCCeeEEEE--Ec--------CCCC-------------ceEEEEeCCHHHHHHHHHHhcCCeeCCCc-
Q 024708 73 VTLDVLHMVFSAFGPVQKIAM--FD--------KNGG-------------LQALIQYPDVQTAVVAKEALEGHCIYDGG- 128 (264)
Q Consensus 73 VT~d~L~~LFs~yG~V~rIki--f~--------K~~g-------------~~AfVqF~d~e~A~~A~~~LnG~~I~g~~- 128 (264)
-+++.|...|..||.|..|.| .+ |..| |-|+|||-.-.--..|+.+|-|.++.-++
T Consensus 173 pse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~akk~d 252 (445)
T KOG2891|consen 173 PSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKLAKKGD 252 (445)
T ss_pred ChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchHHhhcC
Confidence 578899999999999988764 11 1111 34778888877778899999888765331
Q ss_pred ----cceEEEEeeeCC
Q 024708 129 ----FCKLHISYSRHT 140 (264)
Q Consensus 129 ----~c~LrV~fSK~~ 140 (264)
...++|+|-+..
T Consensus 253 ~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 253 DGFFQANVKVDFDRSR 268 (445)
T ss_pred Ccccccccccccchhh
Confidence 114667766554
No 147
>KOG4357 consensus Uncharacterized conserved protein (involved in mesoderm differentiation in humans) [General function prediction only]
Probab=49.70 E-value=86 Score=26.67 Aligned_cols=64 Identities=17% Similarity=0.254 Sum_probs=44.0
Q ss_pred CCcEEEEEEccCCcccCHHHH-------H-----HHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeC
Q 024708 58 ESNVLLASIENMQYAVTLDVL-------H-----MVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 125 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L-------~-----~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~ 125 (264)
.+-+|+|.+..+. .-++.++ - +||...=.|++.+|- .+ .|..-|.|.++|-.|+..|=|+.++
T Consensus 65 ktlmlfv~v~~ps-qp~~kd~rpftee~tqiwq~qlfn~~~dlq~fii~-dd---raifm~kdge~a~e~k~fll~qd~~ 139 (164)
T KOG4357|consen 65 KTLMLFVGVSDPS-QPDEKDIRPFTEEITQIWQGQLFNAHVDLQRFIID-DD---RAIFMFKDGEQAFEAKDFLLGQDFC 139 (164)
T ss_pred ceEEEEEEecCCC-CCChhhccchhHHHHHHHHHHhhccccceEEEEec-CC---eEEEEEeChhHHHHHHHHhhccchh
Confidence 3457778877652 2233222 2 567776677776553 33 3888999999999999999998866
Q ss_pred C
Q 024708 126 D 126 (264)
Q Consensus 126 g 126 (264)
.
T Consensus 140 a 140 (164)
T KOG4357|consen 140 A 140 (164)
T ss_pred e
Confidence 5
No 148
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=49.59 E-value=34 Score=34.88 Aligned_cols=59 Identities=15% Similarity=0.123 Sum_probs=41.0
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC-------CC--ceEEEEeCCHHHHHHHHH
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-------GG--LQALIQYPDVQTAVVAKE 117 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~-------~g--~~AfVqF~d~e~A~~A~~ 117 (264)
.-++-++|..++ ..|+|+.|-..|..||.|.-=.=.+.+ +| .++|+-|++..+.+.-+.
T Consensus 257 ~~S~KVFvGGlp--~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~ 324 (520)
T KOG0129|consen 257 RYSRKVFVGGLP--WDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLS 324 (520)
T ss_pred ccccceeecCCC--ccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHH
Confidence 346778888776 599999999999999987521111100 12 379999999877665433
No 149
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=47.55 E-value=62 Score=29.34 Aligned_cols=62 Identities=13% Similarity=0.047 Sum_probs=50.7
Q ss_pred EEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCC
Q 024708 61 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 127 (264)
Q Consensus 61 VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~ 127 (264)
-++|+.|+ ..-+-++|++..-+-|+|--..+++. + .+.|+|...|+-+.|+..|+..++...
T Consensus 117 RVvVsGLp--~SgSWQDLKDHmReaGdvCfadv~rD--g-~GvV~~~r~eDMkYAvr~ld~~~~~se 178 (241)
T KOG0105|consen 117 RVVVSGLP--PSGSWQDLKDHMREAGDVCFADVQRD--G-VGVVEYLRKEDMKYAVRKLDDQKFRSE 178 (241)
T ss_pred eEEEecCC--CCCchHHHHHHHHhhCCeeeeeeecc--c-ceeeeeeehhhHHHHHHhhccccccCc
Confidence 35566665 48889999999999999987777643 3 699999999999999999998876543
No 150
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=44.86 E-value=85 Score=32.70 Aligned_cols=63 Identities=16% Similarity=0.179 Sum_probs=43.7
Q ss_pred cEEEEEEccCCcccCHHHHHHHHhc--cCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHh-------cCCeeCCC
Q 024708 60 NVLLASIENMQYAVTLDVLHMVFSA--FGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL-------EGHCIYDG 127 (264)
Q Consensus 60 ~VL~V~~lN~~~~VT~d~L~~LFs~--yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~L-------nG~~I~g~ 127 (264)
+|+++.-+. +..-+|+++.||.- +-.+..+.+ .-+.+ =||.|++.++|+.|...| .|+.|..+
T Consensus 176 cIvilREIp--ettp~e~Vk~lf~~encPk~iscef-a~N~n--WyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 176 CIVILREIP--ETTPIEVVKALFKGENCPKVISCEF-AHNDN--WYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred eEEEEeecC--CCChHHHHHHHhccCCCCCceeeee-eecCc--eEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 455555443 57778999999986 445555543 33433 589999999999998877 46666655
No 151
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=41.15 E-value=4.3 Score=43.34 Aligned_cols=60 Identities=15% Similarity=0.132 Sum_probs=44.7
Q ss_pred EEEEEEccCCcccCHHHHHHHHhccCCeeEEEE--E--cCCCCceEEEEeCCHHHHHHHHHHhcCC
Q 024708 61 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAM--F--DKNGGLQALIQYPDVQTAVVAKEALEGH 122 (264)
Q Consensus 61 VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIki--f--~K~~g~~AfVqF~d~e~A~~A~~~LnG~ 122 (264)
..+|+|+. ..+.+.+|+..|+.||.+..|.+ + +++=.+.|+|+|-+.+.|.+|+...++.
T Consensus 669 ~~fvsnl~--~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~ 732 (881)
T KOG0128|consen 669 KIFVSNLS--PKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSC 732 (881)
T ss_pred HHHHhhcc--hhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhh
Confidence 45667554 58899999999999998877754 2 1221236999999999999999876654
No 152
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=39.89 E-value=1.1e+02 Score=20.65 Aligned_cols=58 Identities=14% Similarity=0.168 Sum_probs=34.5
Q ss_pred EEEEEEccCCcccCHHHHHHHHhccC-CeeEEEEEcCCC--CceEEEEeCCHHHHHHHHHHhc
Q 024708 61 VLLASIENMQYAVTLDVLHMVFSAFG-PVQKIAMFDKNG--GLQALIQYPDVQTAVVAKEALE 120 (264)
Q Consensus 61 VL~V~~lN~~~~VT~d~L~~LFs~yG-~V~rIkif~K~~--g~~AfVqF~d~e~A~~A~~~Ln 120 (264)
+|.|...|- +=...++.++|+..| +|..+..+.... .....+.-.+.+++..+++.|.
T Consensus 2 ~v~v~~~dr--pG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 62 (66)
T PF01842_consen 2 RVRVIVPDR--PGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDEEDLEKLLEELE 62 (66)
T ss_dssp EEEEEEETS--TTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEGHGHHHHHHHHH
T ss_pred EEEEEcCCC--CCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCCCCHHHHHHHHH
Confidence 345555553 555677888888888 778887655432 2223334455566666666553
No 153
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=39.30 E-value=1.5e+02 Score=22.96 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=32.5
Q ss_pred ccCHHHHHHHHhc-cC-CeeEEEEEcCCCC-ceEEEEeCCHHHHHHHHHH
Q 024708 72 AVTLDVLHMVFSA-FG-PVQKIAMFDKNGG-LQALIQYPDVQTAVVAKEA 118 (264)
Q Consensus 72 ~VT~d~L~~LFs~-yG-~V~rIkif~K~~g-~~AfVqF~d~e~A~~A~~~ 118 (264)
..|..++.+.++. || .|.+|.......+ ..|+|.+.+.+.|...-..
T Consensus 31 ~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 31 RATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHh
Confidence 6777777766554 45 7888885443322 3799999999888775443
No 154
>KOG0981 consensus DNA topoisomerase I [Replication, recombination and repair]
Probab=36.23 E-value=17 Score=37.81 Aligned_cols=10 Identities=40% Similarity=0.919 Sum_probs=8.7
Q ss_pred CCCeEEEEee
Q 024708 1 MGPCTLRITY 10 (264)
Q Consensus 1 ~gCCtL~I~y 10 (264)
+|||+||++-
T Consensus 496 VGCCsLrveh 505 (759)
T KOG0981|consen 496 VGCCSLRVEH 505 (759)
T ss_pred ccceeeeeee
Confidence 6999999974
No 155
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.82 E-value=1e+02 Score=30.89 Aligned_cols=54 Identities=22% Similarity=0.115 Sum_probs=39.1
Q ss_pred cEEEEEEccCCcccCHHHHHHHHhccCCe-eEEEEEcCCCCceEEEEeCCHHHHHHHHHH
Q 024708 60 NVLLASIENMQYAVTLDVLHMVFSAFGPV-QKIAMFDKNGGLQALIQYPDVQTAVVAKEA 118 (264)
Q Consensus 60 ~VL~V~~lN~~~~VT~d~L~~LFs~yG~V-~rIkif~K~~g~~AfVqF~d~e~A~~A~~~ 118 (264)
.||-|++... +-.| ++|-.+|+.|++- -+|+-++.. +||-.|++...|..|+..
T Consensus 392 HVlEIydfp~-efkt-eDll~~f~~yq~kgfdIkWvDdt---halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPD-EFKT-EDLLKAFETYQNKGFDIKWVDDT---HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCch-hhcc-HHHHHHHHHhhcCCceeEEeecc---eeEEeecchHHHHHHhhc
Confidence 6888887764 4445 4566788888753 466655544 799999999988888753
No 156
>COG1259 Uncharacterized conserved protein [Function unknown]
Probab=28.32 E-value=1.4e+02 Score=25.75 Aligned_cols=57 Identities=23% Similarity=0.259 Sum_probs=37.9
Q ss_pred CCcccCHHHHHHHHhccC-CeeEEEEEcCC-CCceEEEEeCCHH---------HHHHHHHHhcCCeeC
Q 024708 69 MQYAVTLDVLHMVFSAFG-PVQKIAMFDKN-GGLQALIQYPDVQ---------TAVVAKEALEGHCIY 125 (264)
Q Consensus 69 ~~~~VT~d~L~~LFs~yG-~V~rIkif~K~-~g~~AfVqF~d~e---------~A~~A~~~LnG~~I~ 125 (264)
++-+.|.|.|-++|..+| .|+||.|-+.. +.++|-+.++... +=..|+...-|..|+
T Consensus 55 p~RP~tHdll~~i~~~l~~~v~kVvI~d~~d~tyyA~L~~~~~~~~~~iDaRPSDaI~LAlr~~~PI~ 122 (151)
T COG1259 55 PPRPLTHDLLVEIFEELGARVEKVVIDDLIDNTYYATLILEQDDGKIQIDARPSDAIALALRVGAPIY 122 (151)
T ss_pred CCCCcHHHHHHHHHHHhCCcEEEEEEEEeccCeEEEEEEEEcCCceEEEecccchHHHHHHHhCCCEE
Confidence 335789999999999998 89999885432 2455554444332 333467777777666
No 157
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=27.69 E-value=2.3e+02 Score=20.23 Aligned_cols=44 Identities=25% Similarity=0.206 Sum_probs=33.1
Q ss_pred HHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhc
Q 024708 76 DVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 120 (264)
Q Consensus 76 d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~Ln 120 (264)
+.+.++...+| +.-.++.-...|.+.|+-+.+.+.|+.+.+.|.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 46777889999 666666654335578888889999999888874
No 158
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=27.27 E-value=1.9e+02 Score=19.22 Aligned_cols=45 Identities=11% Similarity=0.093 Sum_probs=29.4
Q ss_pred ccCHHHHHHHHhccC-CeeEEEEEcCC-CCceEEEEeCCHHHHHHHH
Q 024708 72 AVTLDVLHMVFSAFG-PVQKIAMFDKN-GGLQALIQYPDVQTAVVAK 116 (264)
Q Consensus 72 ~VT~d~L~~LFs~yG-~V~rIkif~K~-~g~~AfVqF~d~e~A~~A~ 116 (264)
.-....+.++|+..| +|..+.++... +.....+.+++.+.|.+++
T Consensus 9 ~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 9 PGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred CChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 344566777888877 88888776544 2224556778877777654
No 159
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=27.18 E-value=1.1e+02 Score=27.47 Aligned_cols=60 Identities=10% Similarity=0.212 Sum_probs=41.1
Q ss_pred HHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEeeeCCC
Q 024708 78 LHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 141 (264)
Q Consensus 78 L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~fSK~~~ 141 (264)
..+||-.|-++.-..+|+..+ .-.|-|.+++.|+.|+..|++..+.+++ .++..|+....
T Consensus 32 ~~~lFrq~n~~~~fq~lrsfr--rvRi~f~~p~~a~~a~i~~~~~~f~~~~--~~k~yfaQ~~~ 91 (193)
T KOG4019|consen 32 FENLFRQINEDATFQLLRSFR--RVRINFSNPEAAADARIKLHSTSFNGKN--ELKLYFAQPGH 91 (193)
T ss_pred HHhHHhhhCcchHHHHHHhhc--eeEEeccChhHHHHHHHHhhhcccCCCc--eEEEEEccCCC
Confidence 346666555554444333221 3678899999999999999999999873 56777765443
No 160
>PF05929 Phage_GPO: Phage capsid scaffolding protein (GPO) serine peptidase; InterPro: IPR009228 This entry is represented by Bacteriophage P2, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacteriophage capsid scaffolding protein (GpO) and some related bacterial sequences. GpO is thought to function in both the assembly of proheads and the cleavage of GpN [].; GO: 0019069 viral capsid assembly
Probab=27.15 E-value=97 Score=29.22 Aligned_cols=64 Identities=13% Similarity=0.256 Sum_probs=38.1
Q ss_pred ccCHHHHHHH-----HhccCCeeEEEEEcC----CCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEeeeC
Q 024708 72 AVTLDVLHMV-----FSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 139 (264)
Q Consensus 72 ~VT~d~L~~L-----Fs~yG~V~rIkif~K----~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~fSK~ 139 (264)
.|..++++-+ |..||.|..++.-+. .+...-|.+.. +.+.-.+++ -.|++||-. +.|.-+|+..
T Consensus 38 rI~~EH~r~~~p~~~f~~~GdV~alkaEe~~d~~~gkl~L~A~i~-P~~~Lv~~n-k~gQKlftS--iEi~pnFa~t 110 (276)
T PF05929_consen 38 RIWPEHIRSYWPDSPFGNYGDVLALKAEEIDDGGKGKLALFAQID-PNDELVELN-KAGQKLFTS--IEIDPNFADT 110 (276)
T ss_pred eecHHHhcccCCccccccccceEEEEEEEcccCCCCeEEEEEEeC-CCHHHHHHH-HcCCEEEEE--EEeccccccC
Confidence 3555666654 899999999986432 22223344443 444555554 379999974 4455555543
No 161
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=26.60 E-value=4.9e+02 Score=28.12 Aligned_cols=15 Identities=27% Similarity=0.337 Sum_probs=9.8
Q ss_pred CCCCccccCcCCCCC
Q 024708 233 MGPGMMQMHMPGQSG 247 (264)
Q Consensus 233 ~~~~~~~~~~~~~~~ 247 (264)
+.+|++++-||++-.
T Consensus 610 ~~~~s~~~~~pp~pq 624 (756)
T KOG2375|consen 610 QQPGSPPQFMPPYPQ 624 (756)
T ss_pred cccccccccCCCCCC
Confidence 566777777776644
No 162
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=26.04 E-value=74 Score=29.32 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=24.8
Q ss_pred EEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEeeeC
Q 024708 102 ALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRH 139 (264)
Q Consensus 102 AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~fSK~ 139 (264)
|||.|++.++|+.|.+.+...+- + .++++.|-.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~---~~~v~~APe 33 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--N---SWRVSPAPE 33 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--C---CceEeeCCC
Confidence 79999999999999998776542 2 446665533
No 163
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=25.20 E-value=2.4e+02 Score=19.60 Aligned_cols=51 Identities=20% Similarity=0.254 Sum_probs=30.5
Q ss_pred EEEEEccCCcccCHHHHHHHHhccC-CeeEEEEEcCCCCceEEEE--eCCHHHHHHHH
Q 024708 62 LLASIENMQYAVTLDVLHMVFSAFG-PVQKIAMFDKNGGLQALIQ--YPDVQTAVVAK 116 (264)
Q Consensus 62 L~V~~lN~~~~VT~d~L~~LFs~yG-~V~rIkif~K~~g~~AfVq--F~d~e~A~~A~ 116 (264)
|.|.+.| ..=...++-++|++.| +|..+..+...+ .+.+. ++|.+.|..++
T Consensus 4 i~v~v~d--~pG~La~v~~~l~~~~inI~~i~~~~~~~--~~~~rl~~~~~~~~~~~L 57 (66)
T cd04908 4 LSVFLEN--KPGRLAAVTEILSEAGINIRALSIADTSE--FGILRLIVSDPDKAKEAL 57 (66)
T ss_pred EEEEEcC--CCChHHHHHHHHHHCCCCEEEEEEEecCC--CCEEEEEECCHHHHHHHH
Confidence 4454444 3556677888888887 788888765543 24444 45544444443
No 164
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=23.95 E-value=3.6e+02 Score=28.14 Aligned_cols=8 Identities=50% Similarity=1.028 Sum_probs=4.7
Q ss_pred CCCCCCCC
Q 024708 254 AMPPPRPD 261 (264)
Q Consensus 254 ~~~~~~~~ 261 (264)
++||...-
T Consensus 632 AlPpp~~p 639 (694)
T KOG4264|consen 632 ALPPPGGP 639 (694)
T ss_pred CCCCCCcc
Confidence 66665543
No 165
>PHA02529 O capsid-scaffolding protein; Provisional
Probab=21.96 E-value=1.7e+02 Score=27.69 Aligned_cols=54 Identities=17% Similarity=0.341 Sum_probs=32.4
Q ss_pred ccCHHHHHHH-----HhccCCeeEEEEEcCC-CCceEEEEeCCHHHHHHHHHHhcCCeeCCC
Q 024708 72 AVTLDVLHMV-----FSAFGPVQKIAMFDKN-GGLQALIQYPDVQTAVVAKEALEGHCIYDG 127 (264)
Q Consensus 72 ~VT~d~L~~L-----Fs~yG~V~rIkif~K~-~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~ 127 (264)
.|..+.++-. |..||.|..++.-+.. +...-|.+.. +.+.-.+++ =.|++||-.
T Consensus 42 ri~~eH~r~~~pd~~f~~~G~V~~lkaee~~~gk~~L~A~i~-P~~~l~~~n-~~gQklftS 101 (278)
T PHA02529 42 RINLEHIRWAWPDGEFKNYGDVIELKAEEIEDGKLALFAQIA-PTDELVELN-KAGQKLFTS 101 (278)
T ss_pred ccCHHHhccccccccccCCceEEEEEeEEccCCeEEEEEEeC-CcHHHHHHH-HcCCEEEEe
Confidence 3455666654 7899999999864332 2233344444 444555553 368888864
No 166
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=21.75 E-value=91 Score=32.10 Aligned_cols=73 Identities=22% Similarity=0.352 Sum_probs=53.2
Q ss_pred HHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhc---------CCeeCCCccceEEEEeeeCCCCceecC
Q 024708 77 VLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE---------GHCIYDGGFCKLHISYSRHTDLSIKVN 147 (264)
Q Consensus 77 ~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~Ln---------G~~I~g~~~c~LrV~fSK~~~l~vk~n 147 (264)
.+...|..|..+.. .|-.+++| +||.+++.+....|+..|. |.++|.+ -|-=.-|+.++|.|.
T Consensus 464 i~n~~F~~Y~p~~g-~i~~R~nG--vLiS~~~G~a~~yal~~lqdRG~~Fi~pG~~vYeG---miiG~hsR~nDL~VN-- 535 (603)
T COG1217 464 IMNHSFDHYRPVKG-EIGGRHNG--VLISNETGKAVAYALFNLQDRGKLFIEPGTKVYEG---MIIGEHSRDNDLTVN-- 535 (603)
T ss_pred eeeecccccccccc-cccccccc--eEEEcCCCcchHhhhhhHHhcCceeecCCCceeee---eEEeeecCccCceec--
Confidence 57788999998887 56444433 9999999999999999996 7777776 566667787777663
Q ss_pred CCCCccCCCC
Q 024708 148 NDRSRDYTLP 157 (264)
Q Consensus 148 ~~ksrDYT~p 157 (264)
--|.+..||=
T Consensus 536 ~~k~K~LTN~ 545 (603)
T COG1217 536 VLKGKKLTNM 545 (603)
T ss_pred cccccccccc
Confidence 2344455543
No 167
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.20 E-value=3.2e+02 Score=27.83 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=11.7
Q ss_pred CcEEEEEEccCCcccCHHHHHHHHhc
Q 024708 59 SNVLLASIENMQYAVTLDVLHMVFSA 84 (264)
Q Consensus 59 s~VL~V~~lN~~~~VT~d~L~~LFs~ 84 (264)
..|||+.- ..-...|++||+.
T Consensus 236 ~Svlf~ed-----R~~lG~I~EiFGp 256 (483)
T KOG2236|consen 236 DSVLFLED-----RTALGQIFEIFGP 256 (483)
T ss_pred cceEEeec-----cccchhhhhhhcc
Confidence 45565542 2335667777764
Done!