Query 024708
Match_columns 264
No_of_seqs 285 out of 1280
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 13:03:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024708.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024708hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zzy_A Polypyrimidine tract-bi 100.0 1.4E-31 4.7E-36 220.7 12.7 108 55-163 22-129 (130)
2 2e5i_A Heterogeneous nuclear r 100.0 2.6E-28 8.9E-33 199.2 12.7 103 56-160 20-122 (124)
3 1sjr_A Polypyrimidine tract-bi 100.0 5.8E-28 2E-32 206.3 12.7 115 55-170 40-154 (164)
4 3r27_A HnRNP L, heterogeneous 99.7 2.2E-17 7.5E-22 130.1 10.5 81 55-142 17-99 (100)
5 1wex_A Hypothetical protein (r 99.7 1.6E-16 5.5E-21 124.8 10.6 82 56-144 12-95 (104)
6 2ad9_A Polypyrimidine tract-bi 99.7 5.2E-16 1.8E-20 125.5 10.5 83 55-144 27-111 (119)
7 3tyt_A Heterogeneous nuclear r 99.6 5.3E-16 1.8E-20 134.4 10.5 81 57-142 2-82 (205)
8 1sjq_A Polypyrimidine tract-bi 99.6 3.6E-16 1.2E-20 124.1 8.3 82 56-144 13-96 (105)
9 2cq1_A PTB-like protein L; RRM 99.6 1E-15 3.5E-20 119.7 10.7 82 55-143 11-94 (101)
10 1x4d_A Matrin 3; structural ge 99.6 7.5E-16 2.6E-20 121.1 8.2 78 56-140 12-92 (102)
11 4fxv_A ELAV-like protein 1; RN 99.6 1.8E-15 6.1E-20 116.9 10.1 79 57-140 17-99 (99)
12 4f25_A Polyadenylate-binding p 99.6 2.7E-15 9.4E-20 118.1 9.6 92 59-155 5-98 (115)
13 1why_A Hypothetical protein ri 99.6 5.8E-15 2E-19 112.0 10.6 79 56-141 14-94 (97)
14 3s8s_A Histone-lysine N-methyl 99.6 2.8E-15 9.7E-20 118.2 9.0 81 57-142 4-88 (110)
15 3mdf_A Peptidyl-prolyl CIS-tra 99.6 3.8E-15 1.3E-19 109.7 8.9 77 57-138 5-85 (85)
16 2dgu_A Heterogeneous nuclear r 99.6 1.8E-14 6.1E-19 110.7 12.1 78 57-143 9-86 (103)
17 1x4f_A Matrin 3; structural ge 99.6 3.3E-15 1.1E-19 119.7 8.0 79 56-141 22-103 (112)
18 2cpj_A Non-POU domain-containi 99.6 9.2E-15 3.1E-19 111.3 9.7 79 56-141 12-90 (99)
19 2cqi_A Nucleolysin TIAR; RNA r 99.6 1.8E-14 6.2E-19 110.2 11.4 83 56-143 12-96 (103)
20 2a3j_A U1 small nuclear ribonu 99.6 4.8E-15 1.6E-19 120.4 8.4 83 57-145 27-115 (127)
21 2x1f_A MRNA 3'-END-processing 99.6 1.1E-14 3.7E-19 110.4 9.8 81 58-143 1-85 (96)
22 2diu_A KIAA0430 protein; struc 99.6 1E-14 3.6E-19 114.4 9.9 77 57-144 6-88 (96)
23 2dnz_A Probable RNA-binding pr 99.6 1.6E-14 5.5E-19 108.6 10.5 80 57-141 3-86 (95)
24 2e5h_A Zinc finger CCHC-type a 99.6 1.8E-14 6E-19 108.2 10.6 78 56-138 13-94 (94)
25 1whw_A Hypothetical protein ri 99.6 1.9E-14 6.6E-19 109.1 10.9 82 56-142 5-90 (99)
26 2ytc_A PRE-mRNA-splicing facto 99.6 7.7E-15 2.6E-19 108.2 8.4 75 57-138 10-85 (85)
27 3bs9_A Nucleolysin TIA-1 isofo 99.6 9.8E-15 3.3E-19 107.9 8.9 79 57-140 4-86 (87)
28 2dnq_A RNA-binding protein 4B; 99.6 2E-14 6.7E-19 107.7 10.6 77 56-141 5-81 (90)
29 2cqb_A Peptidyl-prolyl CIS-tra 99.6 1E-14 3.6E-19 111.2 8.9 82 56-142 9-94 (102)
30 1x5s_A Cold-inducible RNA-bind 99.6 1.6E-14 5.3E-19 110.2 9.8 82 56-142 9-94 (102)
31 2cq3_A RNA-binding protein 9; 99.6 3.7E-14 1.3E-18 108.5 11.6 83 56-143 12-96 (103)
32 1x4a_A Splicing factor, argini 99.6 2.1E-14 7.2E-19 111.1 10.2 81 56-141 19-100 (109)
33 2la4_A Nuclear and cytoplasmic 99.6 8.9E-15 3.1E-19 111.6 8.0 76 57-139 25-100 (101)
34 2cq2_A Hypothetical protein LO 99.6 1.1E-14 3.9E-19 117.1 8.9 83 56-141 22-107 (114)
35 2cqc_A Arginine/serine-rich sp 99.6 2.3E-14 7.9E-19 107.5 10.1 79 56-139 12-94 (95)
36 1whx_A Hypothetical protein ri 99.5 1.5E-14 5.1E-19 113.6 9.3 78 58-142 9-86 (111)
37 2cph_A RNA binding motif prote 99.5 2.3E-14 8E-19 109.9 10.2 81 56-142 12-99 (107)
38 2dgx_A KIAA0430 protein; RRM d 99.5 2E-14 6.9E-19 109.4 9.7 79 57-141 7-91 (96)
39 1x4g_A Nucleolysin TIAR; struc 99.5 3.2E-14 1.1E-18 110.3 10.8 78 57-141 23-100 (109)
40 2dgt_A RNA-binding protein 30; 99.5 2.4E-14 8.1E-19 107.6 9.7 76 57-141 8-83 (92)
41 2xnq_A Nuclear polyadenylated 99.5 2.7E-14 9.2E-19 109.4 10.2 76 56-140 19-95 (97)
42 2hvz_A Splicing factor, argini 99.5 2.4E-14 8.2E-19 109.2 9.8 75 61-141 2-76 (101)
43 2wbr_A GW182, gawky, LD47780P; 99.5 1.5E-14 5.1E-19 112.1 8.5 73 59-138 7-79 (89)
44 2e44_A Insulin-like growth fac 99.5 3.5E-14 1.2E-18 107.1 10.3 79 58-141 14-93 (96)
45 2dnh_A Bruno-like 5, RNA bindi 99.5 3.7E-14 1.3E-18 108.7 10.5 85 56-142 12-99 (105)
46 2ywk_A Putative RNA-binding pr 99.5 2.8E-14 9.6E-19 107.2 9.6 79 56-139 13-94 (95)
47 4a8x_A RNA-binding protein wit 99.5 2.8E-14 9.5E-19 105.4 9.3 78 58-141 3-86 (88)
48 1nu4_A U1A RNA binding domain; 99.5 1.3E-14 4.5E-19 109.4 7.7 81 57-143 6-92 (97)
49 2dnm_A SRP46 splicing factor; 99.5 1.7E-14 5.8E-19 110.4 8.4 79 57-141 11-94 (103)
50 2cpf_A RNA binding motif prote 99.5 2E-14 6.9E-19 108.8 8.7 80 57-141 3-89 (98)
51 2do4_A Squamous cell carcinoma 99.5 4.6E-14 1.6E-18 107.4 10.7 80 57-141 15-97 (100)
52 1x4c_A Splicing factor, argini 99.5 6.9E-14 2.4E-18 108.6 11.9 77 57-141 13-94 (108)
53 3md1_A Nuclear and cytoplasmic 99.5 3.9E-14 1.3E-18 103.7 9.9 76 60-140 2-81 (83)
54 2dgv_A HnRNP M, heterogeneous 99.5 2.7E-14 9.2E-19 106.7 9.2 81 56-141 5-87 (92)
55 1x5u_A Splicing factor 3B subu 99.5 4.3E-14 1.5E-18 108.3 10.3 82 56-143 12-98 (105)
56 1qm9_A Polypyrimidine tract-bi 99.5 5.6E-14 1.9E-18 117.9 11.9 123 4-140 69-197 (198)
57 2d9p_A Polyadenylate-binding p 99.5 3.9E-14 1.3E-18 108.3 10.0 81 57-142 13-95 (103)
58 2dnp_A RNA-binding protein 14; 99.5 4.8E-14 1.7E-18 105.5 10.3 76 57-141 7-82 (90)
59 1x5t_A Splicing factor 3B subu 99.5 2.3E-14 7.8E-19 107.9 8.4 81 57-142 3-88 (96)
60 2dgs_A DAZ-associated protein 99.5 6.2E-14 2.1E-18 106.5 10.8 80 57-142 8-91 (99)
61 2kvi_A Nuclear polyadenylated 99.5 3.2E-14 1.1E-18 108.1 9.2 78 56-142 7-85 (96)
62 2dgo_A Cytotoxic granule-assoc 99.5 6E-14 2E-18 109.3 10.8 82 56-142 12-97 (115)
63 1p27_B RNA-binding protein 8A; 99.5 4.1E-14 1.4E-18 108.6 9.7 80 57-141 21-104 (106)
64 3ulh_A THO complex subunit 4; 99.5 6.4E-14 2.2E-18 107.6 10.6 78 56-138 26-106 (107)
65 2khc_A Testis-specific RNP-typ 99.5 2E-14 7E-19 112.5 8.0 78 56-138 37-118 (118)
66 2do0_A HnRNP M, heterogeneous 99.5 7.2E-14 2.5E-18 108.5 11.0 80 56-140 12-94 (114)
67 2lxi_A RNA-binding protein 10; 99.5 6.7E-15 2.3E-19 111.7 5.0 78 59-141 1-84 (91)
68 2cq0_A Eukaryotic translation 99.5 5.1E-14 1.7E-18 107.7 9.8 81 56-141 12-96 (103)
69 2cpz_A CUG triplet repeat RNA- 99.5 4.3E-14 1.5E-18 110.3 9.4 82 56-142 22-107 (115)
70 3ex7_B RNA-binding protein 8A; 99.5 5.1E-14 1.7E-18 111.4 9.9 80 57-142 20-104 (126)
71 2adc_A Polypyrimidine tract-bi 99.5 1.1E-13 3.9E-18 120.0 13.0 123 4-140 100-228 (229)
72 2err_A Ataxin-2-binding protei 99.5 3.9E-14 1.3E-18 110.5 9.0 80 56-141 26-108 (109)
73 1oo0_B CG8781-PA, drosophila Y 99.5 4.5E-14 1.5E-18 109.2 9.3 80 57-141 24-107 (110)
74 1x5p_A Negative elongation fac 99.5 8.2E-14 2.8E-18 105.8 10.3 77 57-142 13-89 (97)
75 2cpi_A CCR4-NOT transcription 99.5 4.2E-14 1.4E-18 110.5 8.9 80 57-141 13-102 (111)
76 1x4h_A RNA-binding protein 28; 99.5 7.5E-14 2.6E-18 107.7 10.1 80 57-142 13-103 (111)
77 2fy1_A RNA-binding motif prote 99.5 1.1E-13 3.9E-18 109.3 11.3 81 57-142 5-88 (116)
78 2la6_A RNA-binding protein FUS 99.5 6.6E-14 2.2E-18 106.5 9.5 77 57-138 11-99 (99)
79 2jvo_A Nucleolar protein 3; nu 99.5 4.9E-14 1.7E-18 110.3 8.9 77 56-141 28-104 (108)
80 2i2y_A Fusion protein consists 99.5 3.9E-14 1.3E-18 115.6 8.7 78 57-140 71-148 (150)
81 2kt5_A RNA and export factor-b 99.5 1.1E-13 3.7E-18 109.6 10.6 80 57-142 33-116 (124)
82 1u6f_A Tcubp1, RNA-binding pro 99.5 7.3E-14 2.5E-18 112.2 9.7 80 57-141 40-123 (139)
83 2cqh_A IGF-II mRNA-binding pro 99.5 5.1E-14 1.7E-18 105.8 7.9 77 57-141 6-84 (93)
84 2div_A TRNA selenocysteine ass 99.5 6.2E-14 2.1E-18 106.3 8.2 80 57-141 7-95 (99)
85 3ns6_A Eukaryotic translation 99.5 2.9E-14 9.8E-19 109.7 6.4 76 58-139 5-92 (100)
86 2jrs_A RNA-binding protein 39; 99.5 9.2E-14 3.2E-18 108.5 9.3 80 57-141 24-107 (108)
87 2e5j_A Methenyltetrahydrofolat 99.5 7E-14 2.4E-18 106.2 8.3 78 57-141 17-95 (97)
88 2dgp_A Bruno-like 4, RNA bindi 99.5 1.1E-13 3.9E-18 106.0 9.5 81 56-141 10-97 (106)
89 3lqv_A PRE-mRNA branch site pr 99.5 1.5E-13 5.1E-18 107.0 10.2 79 57-140 6-85 (115)
90 1wf1_A RNA-binding protein RAL 99.5 5.5E-14 1.9E-18 109.1 7.5 76 57-141 25-101 (110)
91 2cpd_A Apobec-1 stimulating pr 99.5 1.6E-13 5.4E-18 104.4 9.9 76 57-141 13-90 (99)
92 2kxn_B Transformer-2 protein h 99.5 1.1E-13 3.6E-18 111.9 9.3 81 56-141 43-127 (129)
93 1p1t_A Cleavage stimulation fa 99.5 3.9E-14 1.3E-18 108.1 6.3 80 58-142 7-90 (104)
94 2lkz_A RNA-binding protein 5; 99.5 8.3E-14 2.8E-18 107.6 8.0 76 58-139 8-94 (95)
95 2cpx_A Hypothetical protein FL 99.5 9.6E-14 3.3E-18 107.9 8.2 81 57-142 23-107 (115)
96 3pgw_A U1-A; protein-RNA compl 99.5 1.6E-13 5.4E-18 121.3 10.6 77 57-139 205-282 (282)
97 1wi8_A EIF-4B, eukaryotic tran 99.5 1.2E-13 4.1E-18 106.0 8.6 77 57-141 13-95 (104)
98 2cq4_A RNA binding motif prote 99.5 1E-13 3.5E-18 108.0 8.3 76 58-140 24-104 (114)
99 2e5g_A U6 snRNA-specific termi 99.5 1.7E-13 5.9E-18 103.5 9.1 78 57-141 6-83 (94)
100 1h2v_Z 20 kDa nuclear CAP bind 99.5 2.4E-13 8.1E-18 111.6 10.7 80 57-141 37-120 (156)
101 3ucg_A Polyadenylate-binding p 99.5 1.1E-13 3.6E-18 102.7 7.7 76 59-140 6-85 (89)
102 2pe8_A Splicing factor 45; RRM 99.5 2.5E-13 8.5E-18 106.7 10.2 83 55-140 4-94 (105)
103 2dis_A Unnamed protein product 99.5 1.4E-13 4.7E-18 106.1 8.5 79 57-141 6-93 (109)
104 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.5 1.9E-13 6.6E-18 109.0 9.5 77 56-137 60-140 (140)
105 2jvr_A Nucleolar protein 3; RN 99.5 1.4E-13 4.8E-18 109.4 8.3 77 58-140 27-105 (111)
106 2cpe_A RNA-binding protein EWS 99.5 1.9E-13 6.6E-18 106.1 8.8 81 56-141 12-104 (113)
107 2adc_A Polypyrimidine tract-bi 99.5 2.8E-13 9.6E-18 117.5 10.7 84 56-145 31-115 (229)
108 2dhg_A TRNA selenocysteine ass 99.5 2.7E-13 9.3E-18 103.6 9.2 81 57-142 7-92 (104)
109 2jwn_A Embryonic polyadenylate 99.4 2.1E-13 7E-18 107.6 8.7 80 58-143 35-118 (124)
110 2cqd_A RNA-binding region cont 99.4 7.2E-13 2.5E-17 103.5 11.3 79 56-140 14-96 (116)
111 2ek1_A RNA-binding protein 12; 99.4 1.2E-13 4E-18 103.8 6.3 78 57-139 13-94 (95)
112 1x4e_A RNA binding motif, sing 99.4 6.4E-14 2.2E-18 103.4 4.7 76 57-138 3-83 (85)
113 2cqp_A RNA-binding protein 12; 99.4 1.4E-13 4.8E-18 104.1 6.7 79 57-140 13-95 (98)
114 1rk8_A CG8781-PA, CG8781-PA pr 99.4 2.9E-13 9.9E-18 112.6 8.9 82 57-143 70-155 (165)
115 2bz2_A Negative elongation fac 99.4 4.2E-13 1.4E-17 107.3 9.5 76 57-141 37-112 (121)
116 1x5o_A RNA binding motif, sing 99.4 6.9E-13 2.4E-17 103.1 10.3 82 57-140 23-112 (114)
117 2j76_E EIF-4B, EIF4B, eukaryot 99.4 9.7E-14 3.3E-18 106.3 5.2 76 57-140 17-98 (100)
118 1wg1_A KIAA1579 protein, homol 99.4 4.1E-13 1.4E-17 100.4 8.5 81 58-146 4-84 (88)
119 2fc9_A NCL protein; structure 99.4 2.3E-13 8E-18 103.6 7.1 78 57-141 13-92 (101)
120 3tyt_A Heterogeneous nuclear r 99.4 1E-12 3.6E-17 113.6 12.1 124 4-137 70-204 (205)
121 2kn4_A Immunoglobulin G-bindin 99.4 4.5E-13 1.5E-17 109.6 9.1 80 57-141 68-151 (158)
122 2dng_A Eukaryotic translation 99.4 4.8E-13 1.6E-17 102.4 8.5 78 57-141 13-94 (103)
123 2dit_A HIV TAT specific factor 99.4 4.9E-13 1.7E-17 104.7 8.8 82 56-140 12-102 (112)
124 3p5t_L Cleavage and polyadenyl 99.4 1.8E-13 6.1E-18 102.8 6.0 76 61-141 3-84 (90)
125 1qm9_A Polypyrimidine tract-bi 99.4 4.6E-13 1.6E-17 112.3 9.1 81 59-145 3-84 (198)
126 2ki2_A SS-DNA binding protein 99.4 1.7E-13 5.8E-18 102.1 5.3 77 60-142 2-82 (90)
127 2nlw_A Eukaryotic translation 99.4 5.4E-13 1.8E-17 103.2 8.2 77 58-139 14-99 (105)
128 2m2b_A RNA-binding protein 10; 99.4 1.9E-13 6.6E-18 109.6 5.7 80 57-143 21-111 (131)
129 3beg_B Splicing factor, argini 99.4 6E-13 2E-17 104.8 8.3 74 58-139 15-93 (115)
130 3s7r_A Heterogeneous nuclear r 99.4 1.3E-12 4.6E-17 96.6 9.5 75 57-137 9-87 (87)
131 2lea_A Serine/arginine-rich sp 99.4 2.8E-13 9.5E-18 110.0 6.2 80 57-141 45-128 (135)
132 1fjc_A Nucleolin RBD2, protein 99.4 3.8E-13 1.3E-17 101.4 6.3 79 57-141 14-92 (96)
133 3pgw_A U1-A; protein-RNA compl 99.4 1.7E-12 5.7E-17 114.8 11.3 81 56-142 6-92 (282)
134 2krb_A Eukaryotic translation 99.4 2.9E-13 9.8E-18 99.6 5.2 66 59-127 1-75 (81)
135 2rs2_A Musashi-1, RNA-binding 99.4 1.1E-12 3.9E-17 102.3 8.8 78 57-141 23-105 (109)
136 1b7f_A Protein (SXL-lethal pro 99.4 1.2E-12 4.2E-17 105.8 9.2 79 58-141 2-84 (168)
137 2dh8_A DAZ-associated protein 99.4 5.2E-13 1.8E-17 102.4 6.6 81 56-142 13-97 (105)
138 1s79_A Lupus LA protein; RRM, 99.4 7.5E-13 2.6E-17 103.2 7.6 76 57-139 9-88 (103)
139 1fxl_A Paraneoplastic encephal 99.4 1.6E-12 5.6E-17 104.5 9.8 78 59-141 2-83 (167)
140 3n9u_C Cleavage and polyadenyl 99.4 1.6E-12 5.3E-17 108.5 9.6 81 58-143 54-140 (156)
141 3d2w_A TAR DNA-binding protein 99.4 1.6E-12 5.5E-17 98.2 8.8 77 57-141 9-85 (89)
142 2dgw_A Probable RNA-binding pr 99.4 2.9E-12 1E-16 95.8 10.0 77 57-140 8-87 (91)
143 1x4b_A Heterogeneous nuclear r 99.4 1.8E-12 6.2E-17 101.2 9.2 79 58-142 26-108 (116)
144 2f3j_A RNA and export factor b 99.4 1.3E-12 4.4E-17 111.0 9.0 80 57-142 86-169 (177)
145 2mss_A Protein (musashi1); RNA 99.4 7.8E-13 2.7E-17 95.4 6.3 70 62-137 2-75 (75)
146 3md3_A Nuclear and cytoplasmic 99.4 3.2E-12 1.1E-16 102.7 10.6 77 60-141 1-80 (166)
147 4f02_A Polyadenylate-binding p 99.4 6.8E-13 2.3E-17 113.9 7.0 79 58-141 102-182 (213)
148 3egn_A RNA-binding protein 40; 99.4 1.8E-12 6E-17 105.0 9.1 80 56-141 42-131 (143)
149 3md3_A Nuclear and cytoplasmic 99.4 3E-12 1E-16 102.8 10.2 78 57-139 85-166 (166)
150 2qfj_A FBP-interacting repress 99.4 2.7E-12 9.1E-17 108.1 10.2 80 58-142 124-207 (216)
151 1fxl_A Paraneoplastic encephal 99.4 2.1E-12 7.2E-17 103.8 8.9 77 58-137 87-167 (167)
152 2cqg_A TDP-43, TAR DNA-binding 99.4 4.1E-12 1.4E-16 97.0 10.0 79 56-141 12-94 (103)
153 3v4m_A Splicing factor U2AF 65 99.4 2.5E-12 8.7E-17 100.8 8.9 81 57-140 3-97 (105)
154 2fc8_A NCL protein; structure 99.3 1.6E-12 5.6E-17 98.9 7.3 78 57-141 13-93 (102)
155 1fj7_A Nucleolin RBD1, protein 99.3 4E-13 1.4E-17 102.3 3.8 78 57-141 15-96 (101)
156 3u1l_A PRE-mRNA-splicing facto 99.3 1.8E-12 6.3E-17 116.3 8.7 79 56-141 131-230 (240)
157 2yh0_A Splicing factor U2AF 65 99.3 2.7E-12 9.2E-17 106.7 8.5 80 57-141 112-195 (198)
158 2cpy_A RNA-binding protein 12; 99.3 1.8E-12 6.1E-17 101.6 7.0 79 57-142 13-96 (114)
159 1b7f_A Protein (SXL-lethal pro 99.3 3.5E-12 1.2E-16 103.1 9.0 78 57-137 87-168 (168)
160 1uaw_A Mouse-musashi-1; RNP-ty 99.3 1.5E-12 5.2E-17 93.9 5.8 71 61-137 2-76 (77)
161 3nmr_A Cugbp ELAV-like family 99.3 5.6E-12 1.9E-16 102.3 9.5 78 58-137 94-174 (175)
162 3tht_A Alkylated DNA repair pr 99.3 3.6E-12 1.2E-16 119.8 9.5 81 56-138 15-97 (345)
163 3ue2_A Poly(U)-binding-splicin 99.3 4.9E-12 1.7E-16 101.6 8.9 81 57-140 18-109 (118)
164 2db1_A Heterogeneous nuclear r 99.3 3E-12 1E-16 101.3 7.6 80 57-142 15-100 (118)
165 2g4b_A Splicing factor U2AF 65 99.3 3.3E-12 1.1E-16 103.9 7.8 76 57-137 92-171 (172)
166 1wg5_A Heterogeneous nuclear r 99.3 7.3E-12 2.5E-16 96.6 9.2 80 57-143 13-97 (104)
167 1wel_A RNA-binding protein 12; 99.3 1.9E-12 6.7E-17 102.6 6.1 79 57-141 23-105 (124)
168 1wf0_A TDP-43, TAR DNA-binding 99.3 1.8E-12 6.2E-17 96.5 5.3 77 57-141 3-79 (88)
169 3pgw_S U1-70K; protein-RNA com 99.3 5.5E-12 1.9E-16 121.2 10.0 80 57-142 100-184 (437)
170 2hzc_A Splicing factor U2AF 65 99.3 4.9E-12 1.7E-16 93.2 7.5 71 57-135 4-85 (87)
171 3q2s_C Cleavage and polyadenyl 99.3 3.2E-12 1.1E-16 112.7 7.6 81 58-143 67-153 (229)
172 4f02_A Polyadenylate-binding p 99.3 1.1E-11 3.9E-16 106.2 10.4 80 57-141 13-96 (213)
173 2lcw_A RNA-binding protein FUS 99.0 2.7E-13 9.4E-18 106.1 0.0 79 57-141 5-96 (116)
174 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.3E-11 4.3E-16 96.6 9.5 65 71-141 27-91 (100)
175 2qfj_A FBP-interacting repress 99.3 1.1E-11 3.9E-16 104.2 9.1 79 58-141 27-109 (216)
176 1wez_A HnRNP H', FTP-3, hetero 99.3 8.7E-12 3E-16 96.6 7.6 78 57-141 13-93 (102)
177 1fje_B Nucleolin RBD12, protei 99.3 8.8E-12 3E-16 102.0 7.9 78 57-140 97-174 (175)
178 2cjk_A Nuclear polyadenylated 99.3 1.2E-11 4.3E-16 100.0 8.4 77 58-140 86-166 (167)
179 2hgl_A HNRPF protein, heteroge 99.3 8.4E-12 2.9E-16 102.4 7.4 79 57-141 42-126 (136)
180 3nmr_A Cugbp ELAV-like family 99.3 2.2E-11 7.6E-16 98.8 9.6 82 58-141 2-89 (175)
181 3s6e_A RNA-binding protein 39; 99.2 1.5E-11 5E-16 98.4 7.8 81 57-141 5-94 (114)
182 3sde_A Paraspeckle component 1 99.2 2.8E-11 9.4E-16 107.0 10.0 78 57-141 20-97 (261)
183 2xs2_A Deleted in azoospermia- 99.2 1.6E-11 5.4E-16 93.6 7.2 76 58-140 8-86 (102)
184 2lmi_A GRSF-1, G-rich sequence 99.2 6.7E-12 2.3E-16 97.3 4.9 78 57-141 9-93 (107)
185 2ghp_A U4/U6 snRNA-associated 99.2 3.1E-11 1.1E-15 107.1 9.8 78 57-140 208-291 (292)
186 1iqt_A AUF1, heterogeneous nuc 99.2 7.9E-12 2.7E-16 89.8 4.7 69 62-137 2-75 (75)
187 1jmt_A Splicing factor U2AF 35 99.2 2.1E-11 7E-16 95.3 6.8 57 78-137 43-103 (104)
188 2dnl_A Cytoplasmic polyadenyla 99.2 3.7E-11 1.3E-15 94.0 8.3 73 57-138 6-86 (114)
189 3smz_A Protein raver-1, ribonu 99.2 4.3E-11 1.5E-15 105.7 9.7 81 57-142 182-266 (284)
190 1l3k_A Heterogeneous nuclear r 99.2 5.4E-11 1.8E-15 98.6 8.5 79 58-142 103-185 (196)
191 1l3k_A Heterogeneous nuclear r 99.2 7.2E-11 2.5E-15 97.8 9.1 79 57-141 11-93 (196)
192 2ghp_A U4/U6 snRNA-associated 99.2 1E-10 3.5E-15 103.7 9.5 83 57-145 39-123 (292)
193 2dnn_A RNA-binding protein 12; 99.1 1.1E-10 3.6E-15 92.3 8.5 74 59-140 16-93 (109)
194 2g4b_A Splicing factor U2AF 65 99.1 9.1E-11 3.1E-15 95.3 8.3 75 58-140 3-88 (172)
195 2yh0_A Splicing factor U2AF 65 99.1 9.2E-11 3.1E-15 97.4 8.2 76 58-141 3-89 (198)
196 3smz_A Protein raver-1, ribonu 99.1 1.6E-10 5.5E-15 102.0 10.2 76 57-140 20-95 (284)
197 2hgn_A Heterogeneous nuclear r 99.1 1.8E-11 6.1E-16 100.9 3.1 77 57-141 44-124 (139)
198 2dha_A FLJ20171 protein; RRM d 99.1 9.1E-11 3.1E-15 94.7 5.7 80 57-142 21-107 (123)
199 2cjk_A Nuclear polyadenylated 99.1 2E-10 6.8E-15 92.8 6.9 75 58-139 2-80 (167)
200 2hgm_A HNRPF protein, heteroge 99.1 9.6E-11 3.3E-15 95.2 4.8 77 57-141 40-122 (126)
201 2dnr_A Synaptojanin-1; RRM dom 99.1 6.4E-10 2.2E-14 86.4 9.1 77 56-140 4-86 (91)
202 2voo_A Lupus LA protein; RNA-b 99.0 4.5E-10 1.5E-14 96.4 8.2 75 59-139 109-186 (193)
203 3sde_A Paraspeckle component 1 99.0 1.2E-09 4.2E-14 96.4 10.1 79 57-140 94-179 (261)
204 1fje_B Nucleolin RBD12, protei 99.0 1.4E-09 4.7E-14 88.9 8.6 79 56-141 10-92 (175)
205 2j8a_A Histone-lysine N-methyl 98.9 1.7E-09 5.8E-14 89.5 8.0 78 60-140 3-96 (136)
206 1ufw_A Synaptojanin 2; RNP dom 98.8 6.1E-09 2.1E-13 81.4 7.2 73 56-136 12-91 (95)
207 1owx_A Lupus LA protein, SS-B, 98.8 1.9E-08 6.5E-13 81.7 10.3 76 55-137 14-93 (121)
208 3dxb_A Thioredoxin N-terminall 98.7 3.4E-08 1.2E-12 84.9 7.4 80 58-140 123-213 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.3 1.4E-06 4.8E-11 70.0 7.7 69 60-135 22-95 (117)
210 1wey_A Calcipressin 1; structu 97.8 4.3E-05 1.5E-09 60.5 6.4 75 60-141 6-85 (104)
211 1whv_A Poly(A)-specific ribonu 96.6 0.0046 1.6E-07 48.5 6.7 57 57-120 14-70 (100)
212 3pq1_A Poly(A) RNA polymerase; 96.5 0.0018 6.2E-08 63.0 4.7 54 60-117 54-107 (464)
213 3ctr_A Poly(A)-specific ribonu 96.3 0.0069 2.4E-07 47.6 5.8 60 59-125 6-65 (101)
214 1wwh_A Nucleoporin 35, nucleop 95.8 0.033 1.1E-06 44.8 8.1 61 61-127 26-86 (119)
215 2dhx_A Poly (ADP-ribose) polym 95.7 0.048 1.6E-06 43.0 8.2 67 59-135 8-79 (104)
216 1uw4_A UPF3X; nonsense mediate 92.3 1.7 5.7E-05 33.1 10.3 79 61-141 3-89 (91)
217 3d45_A Poly(A)-specific ribonu 88.5 1.1 3.6E-05 43.7 7.7 58 58-122 439-496 (507)
218 2i2y_A Fusion protein consists 88.2 0.14 4.8E-06 40.7 1.1 37 100-140 14-51 (150)
219 3p3d_A Nucleoporin 53; structu 86.6 0.64 2.2E-05 38.0 4.2 62 72-137 17-96 (132)
220 2kn4_A Immunoglobulin G-bindin 86.1 0.8 2.7E-05 36.3 4.5 28 100-127 14-41 (158)
221 2l08_A Regulator of nonsense t 67.8 12 0.00041 28.8 6.0 76 61-138 11-94 (97)
222 2g0c_A ATP-dependent RNA helic 66.8 14 0.00047 25.9 5.8 68 62-138 3-75 (76)
223 3off_A LDLR chaperone BOCA; ME 28.6 1.9E+02 0.0065 21.8 6.7 58 59-123 11-76 (90)
224 2e5p_A Protein PHF1, PHD finge 27.6 18 0.00061 26.2 0.8 21 85-109 27-47 (68)
225 2f06_A Conserved hypothetical 24.8 2.3E+02 0.0079 21.5 7.6 54 72-126 83-137 (144)
226 2m0o_A PHD finger protein 1; t 22.5 25 0.00087 26.1 0.8 22 85-110 44-65 (79)
227 2eqj_A Metal-response element- 21.2 53 0.0018 23.6 2.2 20 86-109 32-51 (66)
228 2lea_A Serine/arginine-rich sp 20.7 21 0.00072 27.7 0.0 28 100-127 5-32 (135)
No 1
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.97 E-value=1.4e-31 Score=220.72 Aligned_cols=108 Identities=49% Similarity=0.755 Sum_probs=100.8
Q ss_pred CCCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEE
Q 024708 55 LEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 134 (264)
Q Consensus 55 ~~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV 134 (264)
...+++||+|++.|+.+.||+++|++||++||.|++|+|++++++++|||||++.++|+.|++.|||..|+++ ||+|+|
T Consensus 22 ~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~-~~~LrI 100 (130)
T 3zzy_A 22 MAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNA-CCTLRI 100 (130)
T ss_dssp ---CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETT-EEEEEE
T ss_pred cCCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCC-CcEEEE
Confidence 4578999999999999999999999999999999999998877778899999999999999999999999997 999999
Q ss_pred EeeeCCCCceecCCCCCccCCCCCCCCCC
Q 024708 135 SYSRHTDLSIKVNNDRSRDYTLPSTPMVN 163 (264)
Q Consensus 135 ~fSK~~~l~vk~n~~ksrDYT~p~lp~~~ 163 (264)
+|||+.+++|++|++++||||+|+||.++
T Consensus 101 ~~ak~~~l~v~~n~~~srDyt~~~lp~~~ 129 (130)
T 3zzy_A 101 DFSKLTSLNVKYNNDKSRDYTRPDLPSGD 129 (130)
T ss_dssp EECSCSSCCCCCCSSSEEETTCTTCCSSC
T ss_pred EecCCCceeEEecCCCcccCCCCCCCCCC
Confidence 99999999999999999999999999765
No 2
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.95 E-value=2.6e-28 Score=199.17 Aligned_cols=103 Identities=43% Similarity=0.664 Sum_probs=97.4
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEE
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 135 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~ 135 (264)
.++++||+|++.|+.+.+|+++|+++|+.||.|++|+|++++ +++|||||+|.++|+.|++.|||..|+++ ||+|+|+
T Consensus 20 ~~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~-Gf~aFVef~~~~~A~~A~~~LnG~~i~g~-~~~l~V~ 97 (124)
T 2e5i_A 20 SGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFESVLCAQKAKAALNGADIYAG-CCTLKIE 97 (124)
T ss_dssp CCCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESS-SEEEEEEESSHHHHHHHHHHHTTCCCBTT-BSEEEEE
T ss_pred CCCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEecCC-CeEEEEE
Confidence 357899999999999999999999999999999999998765 66799999999999999999999999997 8899999
Q ss_pred eeeCCCCceecCCCCCccCCCCCCC
Q 024708 136 YSRHTDLSIKVNNDRSRDYTLPSTP 160 (264)
Q Consensus 136 fSK~~~l~vk~n~~ksrDYT~p~lp 160 (264)
|||..+++|++|++++||||+|.||
T Consensus 98 ~Ak~~~l~v~~n~~~srDyt~~~l~ 122 (124)
T 2e5i_A 98 YARPTRLNVIRNDNDSWDYTKPYLG 122 (124)
T ss_dssp CCSCSCCCCSSCSSSEEESSCCCCC
T ss_pred EecCCcceeecCCCCCCCCCCCCCC
Confidence 9999999999999999999999987
No 3
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.95 E-value=5.8e-28 Score=206.27 Aligned_cols=115 Identities=50% Similarity=0.745 Sum_probs=101.2
Q ss_pred CCCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEE
Q 024708 55 LEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 134 (264)
Q Consensus 55 ~~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV 134 (264)
..++++||.|++.|+.+.+|+++|+++|++||.|++|+|++|+.+++|||||+|.++|+.|++.|||..|+++ ||+|+|
T Consensus 40 ~~~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~-g~~L~V 118 (164)
T 1sjr_A 40 MAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNA-CCTLRI 118 (164)
T ss_dssp CCCCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSS-CSCEEE
T ss_pred CCCCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCC-CcEEEE
Confidence 3578899999999999999999999999999999999998776455799999999999999999999999986 789999
Q ss_pred EeeeCCCCceecCCCCCccCCCCCCCCCCCCCCCCC
Q 024708 135 SYSRHTDLSIKVNNDRSRDYTLPSTPMVNSQPSILG 170 (264)
Q Consensus 135 ~fSK~~~l~vk~n~~ksrDYT~p~lp~~~~qps~~G 170 (264)
+|||.++++|+++++++||||+|.||.++.+|++..
T Consensus 119 ~~Ak~~~l~vk~nn~rsrDyt~p~lp~~~~~~~~~~ 154 (164)
T 1sjr_A 119 DFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQ 154 (164)
T ss_dssp EECSSSSCCCCCCSSSEEESSCSCCCCCC-------
T ss_pred EEecCCcccccccCCCCccccCCCCCCCCCCCCcch
Confidence 999999999999999999999999999888777644
No 4
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.72 E-value=2.2e-17 Score=130.15 Aligned_cols=81 Identities=23% Similarity=0.265 Sum_probs=72.2
Q ss_pred CCCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCe--eCCCccceE
Q 024708 55 LEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC--IYDGGFCKL 132 (264)
Q Consensus 55 ~~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~--I~g~~~c~L 132 (264)
..+++++|+|.|++ +.+|+++|.++|+.||.|.+|++.+.+ + +|||+|++.++|..|++.|||.. |.|+ +|
T Consensus 17 ~~~ps~~l~V~NLp--~~~te~~L~~lF~~fG~V~~v~i~~~k-g-~AFVef~~~~~A~~Av~~ln~~~~~i~Gr---~i 89 (100)
T 3r27_A 17 KTPASPVVHIRGLI--DGVVEADLVEALQEFGPISYVVVMPKK-R-QALVEFEDVLGACNAVNYAADNQIYIAGH---PA 89 (100)
T ss_dssp CCCCCSEEEEESCC--TTCCHHHHHHHHGGGSCEEEEEEETTT-T-EEEEEESSHHHHHHHHHHHHHSCEEETTE---EE
T ss_pred cCCCCcEEEEeCCC--CCCCHHHHHHHHhccCCEEEEEEEcCC-C-EEEEEECCHHHHHHHHHHhcCCCceeCCc---EE
Confidence 35789999999776 699999999999999999999988644 4 69999999999999999999987 5687 99
Q ss_pred EEEeeeCCCC
Q 024708 133 HISYSRHTDL 142 (264)
Q Consensus 133 rV~fSK~~~l 142 (264)
+|+|||.++|
T Consensus 90 ~V~~S~~k~l 99 (100)
T 3r27_A 90 FVNYSTSQKI 99 (100)
T ss_dssp EEEECSCSCC
T ss_pred EEEecccccc
Confidence 9999999876
No 5
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=1.6e-16 Score=124.78 Aligned_cols=82 Identities=17% Similarity=0.147 Sum_probs=71.8
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCe--eCCCccceEE
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC--IYDGGFCKLH 133 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~--I~g~~~c~Lr 133 (264)
.+++++|+|.+++ +.+|+++|.++|++||.|.+|+|.+.+ + +|||+|++.++|+.|++.|++.. |.|+ +|+
T Consensus 12 ~~p~~~l~V~nLp--~~~te~~L~~~F~~fG~V~~v~i~~~k-g-~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr---~l~ 84 (104)
T 1wex_A 12 VSVSPVVHVRGLC--ESVVEADLVEALEKFGTICYVMMMPFK-R-QALVEFENIDSAKECVTFAADVPVYIAGQ---QAF 84 (104)
T ss_dssp CCCCSEEEEESCC--SSCCHHHHHHHHTTTSCEEEEEEETTT-T-EEEEEESSHHHHHHHHHHHHHSCCBSSSS---BCE
T ss_pred CCCCCEEEEeCCC--CCCCHHHHHHHHHhCCCEEEEEEECCC-C-EEEEEECCHHHHHHHHHHhccCCceECCE---EEE
Confidence 4678999999765 699999999999999999999987644 4 69999999999999999998765 7887 999
Q ss_pred EEeeeCCCCce
Q 024708 134 ISYSRHTDLSI 144 (264)
Q Consensus 134 V~fSK~~~l~v 144 (264)
|+||+.+.+..
T Consensus 85 V~~a~~~~~~~ 95 (104)
T 1wex_A 85 FNYSTSKRITR 95 (104)
T ss_dssp EEECSSSSCCC
T ss_pred EEEccCccccC
Confidence 99999887653
No 6
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=5.2e-16 Score=125.54 Aligned_cols=83 Identities=19% Similarity=0.189 Sum_probs=72.8
Q ss_pred CCCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcC--CeeCCCccceE
Q 024708 55 LEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG--HCIYDGGFCKL 132 (264)
Q Consensus 55 ~~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG--~~I~g~~~c~L 132 (264)
..+++++|+|.+|+ +.+|+++|.++|+.||.|.+|+|.+.+ + +|||+|++.++|+.|++.|++ ..|.|+ +|
T Consensus 27 ~~~ps~~LfVgNLp--~~vte~dL~~lF~~fG~V~~v~i~~~k-G-~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr---~l 99 (119)
T 2ad9_A 27 AGVPSRVIHIRKLP--IDVTEGEVISLGLPFGKVTNLLMLKGK-N-QAFIEMNTEEAANTMVNYYTSVTPVLRGQ---PI 99 (119)
T ss_dssp CSSCCSEEEEESCC--TTCCHHHHHHHHTTTSCCCEEEEEGGG-T-EEEEECSCHHHHHHHHHHHHHHCCCBTTB---CC
T ss_pred cCCCCCEEEEeCCC--CCCCHHHHHHHHHhcCCEEEEEEeCCC-C-EEEEEECCHHHHHHHHHHhccCCceECCe---EE
Confidence 45678999999665 689999999999999999999988654 4 699999999999999999984 678888 99
Q ss_pred EEEeeeCCCCce
Q 024708 133 HISYSRHTDLSI 144 (264)
Q Consensus 133 rV~fSK~~~l~v 144 (264)
+|+||+.+.+.-
T Consensus 100 ~V~~a~~k~~~~ 111 (119)
T 2ad9_A 100 YIQFSNHKELKT 111 (119)
T ss_dssp EEEECSSSSCCC
T ss_pred EEEEccCCCCCc
Confidence 999999887764
No 7
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.64 E-value=5.3e-16 Score=134.39 Aligned_cols=81 Identities=20% Similarity=0.343 Sum_probs=72.7
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEe
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 136 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~f 136 (264)
+++++|+|.|++. +.+|+++|+++|+.||.|.+|++...+++ +|||+|++.++|+.|++.|||..|+|+ .|+|+|
T Consensus 2 ~~~~~l~V~nL~~-~~~~~~~L~~~F~~~G~v~~v~i~~~~~g-~afV~f~~~~~A~~Ai~~lng~~~~g~---~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQ-SKMNCDRVFNVFCLYGNVEKVKFMKSKPG-AAMVEMADGYAVDRAITHLNNNFMFGQ---KMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCT-TTCCHHHHHHHHTTTSCEEEEEECTTSTT-CEEEEESSHHHHHHHHHHHTTCEETTE---ECEEEE
T ss_pred CCCCEEEEeCCCc-ccCCHHHHHHHHHhcCCeEEEEEecCCCC-EEEEEECCHHHHHHHHHHhCCCEECCc---eEEEEE
Confidence 4678999997763 58999999999999999999998765545 699999999999999999999999998 999999
Q ss_pred eeCCCC
Q 024708 137 SRHTDL 142 (264)
Q Consensus 137 SK~~~l 142 (264)
||...+
T Consensus 77 s~~~~~ 82 (205)
T 3tyt_A 77 SKQPAI 82 (205)
T ss_dssp CSCSCC
T ss_pred ccCCcc
Confidence 997765
No 8
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.6e-16 Score=124.13 Aligned_cols=82 Identities=20% Similarity=0.197 Sum_probs=71.6
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcC--CeeCCCccceEE
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG--HCIYDGGFCKLH 133 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG--~~I~g~~~c~Lr 133 (264)
.+++++|+|.|++ +.+|+++|.++|+.||.|.+|+|.+.+ + +|||+|++.++|+.|++.|++ ..|.|+ +|+
T Consensus 13 ~~~~~~LfV~nLp--~~vte~dL~~lF~~fG~V~~v~i~~~k-G-faFVeF~~~~~A~~Ai~~l~~~~~~l~Gr---~l~ 85 (105)
T 1sjq_A 13 GVPSRVIHIRKLP--IDVTEGEVISLGLPFGKVTNLLMLKGK-N-QAFIEMNTEEAANTMVNYYTSVTPVLRGQ---PIY 85 (105)
T ss_dssp CCCCCEEEECSCC--TTSCHHHHHHHHHHHCCEEEEEEETTT-T-EEEEEESSHHHHHHHHHHHTTSCCEETTE---ECC
T ss_pred CCCCCEEEEeCCC--CCCCHHHHHHHHHhcCCEEEEEEEcCC-C-EEEEEECCHHHHHHHHHHhccCCceECCE---EEE
Confidence 3567899998665 699999999999999999999988654 4 699999999999999999974 788888 999
Q ss_pred EEeeeCCCCce
Q 024708 134 ISYSRHTDLSI 144 (264)
Q Consensus 134 V~fSK~~~l~v 144 (264)
|+||+.+.+.-
T Consensus 86 V~~A~~~~~~~ 96 (105)
T 1sjq_A 86 IQFSNHKELKT 96 (105)
T ss_dssp BCCCSSSSCCC
T ss_pred EEEcCCCCCCc
Confidence 99999887754
No 9
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1e-15 Score=119.71 Aligned_cols=82 Identities=22% Similarity=0.223 Sum_probs=71.8
Q ss_pred CCCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhc--CCeeCCCccceE
Q 024708 55 LEPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE--GHCIYDGGFCKL 132 (264)
Q Consensus 55 ~~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~Ln--G~~I~g~~~c~L 132 (264)
..+++++|+|.|++ +.+|+++|.++|+.||.|.+|++.+.+ + +|||+|++.++|+.|++.|+ +..|.|+ +|
T Consensus 11 ~~~p~~~l~V~nLp--~~~te~~L~~~F~~fG~v~~v~i~~~k-g-~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr---~l 83 (101)
T 2cq1_A 11 DGAPSRVLHIRKLP--GEVTETEVIALGLPFGKVTNILMLKGK-N-QAFLELATEEAAITMVNYYSAVTPHLRNQ---PI 83 (101)
T ss_dssp CSSCCSEEEEESCC--TTCCHHHHHHTTTTTSCEEEEEEETTT-T-EEEEEESSHHHHHHHHHHHHHSCCEETTE---EC
T ss_pred cCCCCCEEEEeCCC--CCCCHHHHHHHHHhcCCEEEEEEECCC-C-EEEEEECCHHHHHHHHHHhccCCceECCc---EE
Confidence 34678999999765 699999999999999999999987653 4 69999999999999999875 6778998 99
Q ss_pred EEEeeeCCCCc
Q 024708 133 HISYSRHTDLS 143 (264)
Q Consensus 133 rV~fSK~~~l~ 143 (264)
+|+||+.+.+.
T Consensus 84 ~V~~a~~~~~~ 94 (101)
T 2cq1_A 84 YIQYSNHKELK 94 (101)
T ss_dssp EEEECSCSSCC
T ss_pred EEEEcCcccCc
Confidence 99999988775
No 10
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=7.5e-16 Score=121.14 Aligned_cols=78 Identities=13% Similarity=0.131 Sum_probs=68.1
Q ss_pred CCCCcEEEEEEccCCc-ccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCC--eeCCCccceE
Q 024708 56 EPESNVLLASIENMQY-AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGH--CIYDGGFCKL 132 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~-~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~--~I~g~~~c~L 132 (264)
..++++|+|.||+ + .+|+++|.++|+.||.|.+|+|.+.+ + +|||+|++.++|+.|++.|||. .|.|+ +|
T Consensus 12 ~~p~~~l~V~nLp--~~~~te~dL~~lF~~fG~V~~v~i~~~k-g-~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr---~l 84 (102)
T 1x4d_A 12 VETRRVVHIMDFQ--RGKNLRYQLLQLVEPFGVISNHLILNKI-N-EAFIEMATTEDAQAAVDYYTTTPALVFGK---PV 84 (102)
T ss_dssp CCCCCEEEEESCC--CSSSHHHHHHTTTGGGSCEEEEEECSSS-S-CEEEEESSHHHHHHHHHHHHHSCCEETTE---EC
T ss_pred CCCCCEEEEeCCC--CCcCCHHHHHHHHHhcCCEEEEEEEcCC-C-EEEEEECCHHHHHHHHHHHcCCCceECCc---EE
Confidence 3578899999665 7 89999999999999999999987544 4 6999999999999999999975 48888 99
Q ss_pred EEEeeeCC
Q 024708 133 HISYSRHT 140 (264)
Q Consensus 133 rV~fSK~~ 140 (264)
+|+||+..
T Consensus 85 ~V~~a~~~ 92 (102)
T 1x4d_A 85 RVHLSQKY 92 (102)
T ss_dssp EEEEECCC
T ss_pred EEEECCCC
Confidence 99999853
No 11
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.62 E-value=1.8e-15 Score=116.93 Aligned_cols=79 Identities=23% Similarity=0.339 Sum_probs=67.7
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEc-CCCC---ceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD-KNGG---LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~-K~~g---~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
..++.|+|.|++ +.+|+++|+++|+.||.|.+|++.. +..+ ..|||+|.+.++|++|++.|||..|.|+ +|
T Consensus 17 ~~gt~lfV~nLp--~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr---~l 91 (99)
T 4fxv_A 17 FQGTNLIVNYLP--QNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSK---TI 91 (99)
T ss_dssp CCCSEEEEESCC--TTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE---EC
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCE---EE
Confidence 345679999765 6999999999999999999999754 2211 3699999999999999999999999998 99
Q ss_pred EEEeeeCC
Q 024708 133 HISYSRHT 140 (264)
Q Consensus 133 rV~fSK~~ 140 (264)
+|+|||+.
T Consensus 92 ~V~~AkPS 99 (99)
T 4fxv_A 92 KVSYARPS 99 (99)
T ss_dssp EEEECCBC
T ss_pred EEEEeeCC
Confidence 99999863
No 12
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.60 E-value=2.7e-15 Score=118.13 Aligned_cols=92 Identities=16% Similarity=0.213 Sum_probs=67.9
Q ss_pred CcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCC--CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEe
Q 024708 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG--GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 136 (264)
Q Consensus 59 s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~--g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~f 136 (264)
+..|+|.+++ +.+|+++|+++|+.||.|.+|+|...++ ...|||+|++.++|+.|++.|||..|.|+ .|+|++
T Consensus 5 ~~~lfV~nLp--~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~---~i~V~~ 79 (115)
T 4f25_A 5 SGNIFIKNLD--KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR---KVFVGR 79 (115)
T ss_dssp CCEEEEESCC--TTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTE---ECEEEE
T ss_pred CCEEEECCCC--CCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCE---EEEEEE
Confidence 4579998765 6999999999999999999999754321 13699999999999999999999999998 999999
Q ss_pred eeCCCCceecCCCCCccCC
Q 024708 137 SRHTDLSIKVNNDRSRDYT 155 (264)
Q Consensus 137 SK~~~l~vk~n~~ksrDYT 155 (264)
++.....-.....+.++++
T Consensus 80 a~~~~~~~~~~~~~~~~~~ 98 (115)
T 4f25_A 80 FKSRKEREAELGARAKEFT 98 (115)
T ss_dssp SSCCCC-------------
T ss_pred CCCccccccccccccCCCC
Confidence 9876543333333333433
No 13
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=5.8e-15 Score=112.05 Aligned_cols=79 Identities=20% Similarity=0.304 Sum_probs=69.7
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeC--CCccceEE
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY--DGGFCKLH 133 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~--g~~~c~Lr 133 (264)
..+++.|+|.+++ +.+|+++|+++|+.||.|.+|++...+ + .|||+|++.++|+.|++.|||..|. ++ .|+
T Consensus 14 ~~~~~~l~V~nlp--~~~t~~~l~~~F~~~G~v~~v~~~~~~-g-~afV~f~~~~~A~~A~~~l~g~~~~~~g~---~l~ 86 (97)
T 1why_A 14 ANPTTRLWVGGLG--PNTSLAALAREFDRFGSIRTIDHVKGD-S-FAYIQYESLDAAQAACAKMRGFPLGGPDR---RLR 86 (97)
T ss_dssp CCCCSCEEEECCC--SSCCHHHHHHHHHTTSCEEEEEECSSS-C-CEEEEESSHHHHHHHHHHHTTCBCSSSSC---BCE
T ss_pred CCCCCEEEEeCCC--CCCCHHHHHHHHHhcCCeeEEEEeCCC-C-EEEEEECCHHHHHHHHHHHCCCEeCCCCc---EEE
Confidence 3567899999665 589999999999999999999987653 4 6999999999999999999999999 77 999
Q ss_pred EEeeeCCC
Q 024708 134 ISYSRHTD 141 (264)
Q Consensus 134 V~fSK~~~ 141 (264)
|+|++...
T Consensus 87 V~~a~~~~ 94 (97)
T 1why_A 87 VDFAKSGP 94 (97)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998753
No 14
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.59 E-value=2.8e-15 Score=118.18 Aligned_cols=81 Identities=11% Similarity=0.055 Sum_probs=69.7
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEc-CCC---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD-KNG---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~-K~~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
++.+.|+|.+++ +.+|+++|+++|++||.|.+|+|.. +.. ...|||+|++.++|+.|++.|||..|.|+ .|
T Consensus 4 ~p~~~lfV~nL~--~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr---~i 78 (110)
T 3s8s_A 4 IPLKEVTFARLN--DNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGN---II 78 (110)
T ss_dssp SCCCEEEEESCC--TTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE---EC
T ss_pred CCCcEEEEECCC--CCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCe---EE
Confidence 567899999776 6999999999999999999999753 221 13699999999999999999999999998 99
Q ss_pred EEEeeeCCCC
Q 024708 133 HISYSRHTDL 142 (264)
Q Consensus 133 rV~fSK~~~l 142 (264)
+|++++....
T Consensus 79 ~V~~a~~~~~ 88 (110)
T 3s8s_A 79 HAQLDIKGQQ 88 (110)
T ss_dssp EEEECSTTHH
T ss_pred EEEECCCCcH
Confidence 9999976543
No 15
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.59 E-value=3.8e-15 Score=109.67 Aligned_cols=77 Identities=17% Similarity=0.255 Sum_probs=66.9
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcC-CC---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-NG---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K-~~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
.++++|+|.+++ +.+|+++|+++|+.||.|.+|++... .. ...|||+|.+.++|+.|++.|||..|.|+ .|
T Consensus 5 ~~~~~l~V~nl~--~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l 79 (85)
T 3mdf_A 5 TTKRVLYVGGLA--EEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR---TI 79 (85)
T ss_dssp CCSSEEEEECCC--TTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTE---EC
T ss_pred CCCCEEEEECCC--CCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCc---EE
Confidence 467899999776 58999999999999999999997432 11 23699999999999999999999999998 99
Q ss_pred EEEeee
Q 024708 133 HISYSR 138 (264)
Q Consensus 133 rV~fSK 138 (264)
+|+|||
T Consensus 80 ~v~~ak 85 (85)
T 3mdf_A 80 RVNLAK 85 (85)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999986
No 16
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.58 E-value=1.8e-14 Score=110.66 Aligned_cols=78 Identities=23% Similarity=0.406 Sum_probs=69.6
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEe
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 136 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~f 136 (264)
.++++|+|.+++ +.+|+++|+++|+.||.|.+|++.+ + +|||+|.+.++|+.|++.|||..|.++ .|+|+|
T Consensus 9 ~~~~~l~V~nl~--~~~t~~~l~~~F~~~G~i~~v~~~~---~-~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~ 79 (103)
T 2dgu_A 9 AKVKVLFVRNLA--NTVTEEILEKAFSQFGKLERVKKLK---D-YAFIHFDERDGAVKAMEEMNGKDLEGE---NIEIVF 79 (103)
T ss_dssp CCCCCEEEECCC--TTCCHHHHHHHHHHHSCEEEEEECS---S-CEEEEESSHHHHHHHHHHHTTEEETTE---EEEEEE
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHhcCCEEEEEEEC---C-EEEEEeCCHHHHHHHHHHHCCCccCCC---EEEEEE
Confidence 457899999765 5899999999999999999999873 3 699999999999999999999999998 999999
Q ss_pred eeCCCCc
Q 024708 137 SRHTDLS 143 (264)
Q Consensus 137 SK~~~l~ 143 (264)
++.....
T Consensus 80 a~~~~~~ 86 (103)
T 2dgu_A 80 AKPPDQK 86 (103)
T ss_dssp CCCCCCC
T ss_pred cCCCccc
Confidence 9886654
No 17
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=3.3e-15 Score=119.67 Aligned_cols=79 Identities=10% Similarity=0.094 Sum_probs=68.3
Q ss_pred CCCCcEEEEEEccCCcc-cCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcC--CeeCCCccceE
Q 024708 56 EPESNVLLASIENMQYA-VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG--HCIYDGGFCKL 132 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~-VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG--~~I~g~~~c~L 132 (264)
..++++|+|.|++ +. +|+++|.++|+.||.|.+|+|.+.+ + +|||+|++.++|+.|++.||+ ..|.|+ +|
T Consensus 22 ~~p~~~l~V~NLp--~~~~te~~L~~lF~~fG~V~~v~i~~~k-g-~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr---~l 94 (112)
T 1x4f_A 22 QELGRVIHLSNLP--HSGYSDSAVLKLAEPYGKIKNYILMRMK-S-QAFIEMETREDAMAMVDHCLKKALWFQGR---CV 94 (112)
T ss_dssp SCCCCEEEEESCC--CSSCCSHHHHTTTTTTSCCSEEEEETTT-T-EEEEECSSHHHHHHHHHHHHHSCCCSSSS---CC
T ss_pred CCCCCEEEEeCCC--CccCCHHHHHHHHHhcCCEEEEEEecCC-C-EEEEEECCHHHHHHHHHHhccCCceECCE---EE
Confidence 4578999999765 67 9999999999999999999987544 4 699999999999999999975 458888 99
Q ss_pred EEEeeeCCC
Q 024708 133 HISYSRHTD 141 (264)
Q Consensus 133 rV~fSK~~~ 141 (264)
+|+||+...
T Consensus 95 ~V~~a~~~~ 103 (112)
T 1x4f_A 95 KVDLSEKYK 103 (112)
T ss_dssp EEEEECSCS
T ss_pred EEEECcccc
Confidence 999997654
No 18
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=9.2e-15 Score=111.31 Aligned_cols=79 Identities=15% Similarity=0.264 Sum_probs=70.3
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEE
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 135 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~ 135 (264)
..+++.|+|.+++ +.+|+++|+++|+.||.|++|++.+.+ + .|||+|.+.++|+.|++.|||..|.++ .|+|+
T Consensus 12 ~~~~~~l~V~nlp--~~~t~~~l~~~F~~~G~i~~v~~~~~k-g-~afV~f~~~~~a~~a~~~l~g~~~~g~---~l~v~ 84 (99)
T 2cpj_A 12 FTQRSRLFVGNLP--PDITEEEMRKLFEKYGKAGEVFIHKDK-G-FGFIRLETRTLAEIAKVELDNMPLRGK---QLRVR 84 (99)
T ss_dssp CCCTTEEEEESCC--TTCCHHHHHHHTSTTCCCSEEEEETTT-T-EEEEECSSSHHHHHHHHHHTTCCBTTB---CCEEE
T ss_pred CCCCCEEEEeCCC--CCCCHHHHHHHHhhcCCeEEEEEecCC-C-EEEEEECCHHHHHHHHHHhCCCEeCCc---eEEEE
Confidence 3567899999765 589999999999999999999987544 4 699999999999999999999999998 99999
Q ss_pred eeeCCC
Q 024708 136 YSRHTD 141 (264)
Q Consensus 136 fSK~~~ 141 (264)
|++...
T Consensus 85 ~a~~~~ 90 (99)
T 2cpj_A 85 FACHSA 90 (99)
T ss_dssp ESSCCS
T ss_pred EcCCCC
Confidence 998754
No 19
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.8e-14 Score=110.19 Aligned_cols=83 Identities=16% Similarity=0.286 Sum_probs=71.1
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCC--CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEE
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG--GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 133 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~--g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~Lr 133 (264)
..+++.|+|.+++ +.+|+++|+++|+.||.|++|+|...+. ...|||+|.+.++|+.|++.|||..|.++ .|+
T Consensus 12 ~~~~~~l~V~nlp--~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~ 86 (103)
T 2cqi_A 12 DGQPRTLYVGNLS--RDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGK---EVK 86 (103)
T ss_dssp SCCCCEEEEESCC--TTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTE---EEE
T ss_pred CCCCCEEEEeCCC--ccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCC---eEE
Confidence 3567899999765 6999999999999999999999865321 13699999999999999999999999998 999
Q ss_pred EEeeeCCCCc
Q 024708 134 ISYSRHTDLS 143 (264)
Q Consensus 134 V~fSK~~~l~ 143 (264)
|+|++....+
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2cqi_A 87 VNWATTPSSQ 96 (103)
T ss_dssp EEECCCTTCC
T ss_pred EEECCCCccc
Confidence 9999886543
No 20
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=4.8e-15 Score=120.44 Aligned_cols=83 Identities=24% Similarity=0.274 Sum_probs=70.7
Q ss_pred CCCcEEEEEEccCCcccCHHHHH----HHHhccCCeeEEEEEc--CCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccc
Q 024708 57 PESNVLLASIENMQYAVTLDVLH----MVFSAFGPVQKIAMFD--KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 130 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~----~LFs~yG~V~rIkif~--K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c 130 (264)
.++++|+|.+++ +.+++++|. ++|+.||.|.+|.+.. +.+| +|||+|++.++|+.|++.|||..|.|+
T Consensus 27 ~p~~~LfV~nL~--~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG-~aFV~F~~~~~A~~Ai~~lng~~l~gr--- 100 (127)
T 2a3j_A 27 EPSQVVLITNIN--PEVPKEKLQALLYALASSQGDILDIVVDLSDDNSG-KAYIVFATQESAQAFVEAFQGYPFQGN--- 100 (127)
T ss_dssp SCCSEEEEESCC--TTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCC-CEEEEESSHHHHHHHHHHSTTCCCTTS---
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCC-EEEEEECCHHHHHHHHHHHCCCEeCCC---
Confidence 567899999776 689998865 7999999999998753 2344 699999999999999999999999998
Q ss_pred eEEEEeeeCCCCcee
Q 024708 131 KLHISYSRHTDLSIK 145 (264)
Q Consensus 131 ~LrV~fSK~~~l~vk 145 (264)
.|+|+||+.....+.
T Consensus 101 ~l~V~~a~~~~~~~~ 115 (127)
T 2a3j_A 101 PLVITFSETPQSQVA 115 (127)
T ss_dssp CCEEEECCCCCHHHH
T ss_pred EEEEEEccCcchhcc
Confidence 999999998765443
No 21
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.57 E-value=1.1e-14 Score=110.36 Aligned_cols=81 Identities=25% Similarity=0.304 Sum_probs=69.9
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCC----CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEE
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG----GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 133 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~----g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~Lr 133 (264)
+++.|+|.+++ +.+|+++|.++|+.||.|.+|++...+. ...|||+|.+.++|+.|++.|||..|.|+ .|+
T Consensus 1 P~~~l~V~nLp--~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~ 75 (96)
T 2x1f_A 1 PSRVVYLGSIP--YDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSR---FLK 75 (96)
T ss_dssp CCSEEEEESCC--TTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred CCcEEEEECCC--CCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCe---EEE
Confidence 46889999665 6999999999999999999999754321 23699999999999999999999999998 999
Q ss_pred EEeeeCCCCc
Q 024708 134 ISYSRHTDLS 143 (264)
Q Consensus 134 V~fSK~~~l~ 143 (264)
|+|++.....
T Consensus 76 V~~a~~~~~~ 85 (96)
T 2x1f_A 76 CGYSSNSDIS 85 (96)
T ss_dssp EEECSCSSGG
T ss_pred EEEcCCCCCC
Confidence 9999887654
No 22
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=1e-14 Score=114.42 Aligned_cols=77 Identities=14% Similarity=0.201 Sum_probs=65.7
Q ss_pred CCCcE-EEEEEccCCcccCHHH----HHHHHhcc-CCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccc
Q 024708 57 PESNV-LLASIENMQYAVTLDV----LHMVFSAF-GPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 130 (264)
Q Consensus 57 ~~s~V-L~V~~lN~~~~VT~d~----L~~LFs~y-G~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c 130 (264)
+++.+ |+|.||+ +.+++++ |++||+.| |+|++|. +| +|||+|.+.++|++|++.|||..|+|+
T Consensus 6 ~p~~T~lYV~NL~--~~~~~~~lk~~L~~lF~~yGG~Vl~Vt-----gG-~AfV~F~~~esA~~A~~~l~G~~l~gr--- 74 (96)
T 2diu_A 6 SGCHTLLYVYNLP--ANKDGKSVSNRLRRLSDNCGGKVLSIT-----GC-SAILRFINQDSAERAQKRMENEDVFGN--- 74 (96)
T ss_dssp CCSSEEEEEESCC--TTSCHHHHHHHHHHHHHTTTCCEEECC-----TT-CEEEEESSHHHHHHHHHHHTTCCSSSS---
T ss_pred CCcceEEEEeCCC--CcCCHHHHHHHHHHHHHHcCCeeEEEe-----cC-EEEEEECCHHHHHHHHHHhcCCccCCc---
Confidence 56776 6688665 7999987 66999999 5999992 23 799999999999999999999999999
Q ss_pred eEEEEeeeCCCCce
Q 024708 131 KLHISYSRHTDLSI 144 (264)
Q Consensus 131 ~LrV~fSK~~~l~v 144 (264)
.|+|+|||..+-.+
T Consensus 75 ~i~v~~A~~~sd~~ 88 (96)
T 2diu_A 75 RIIVSFTPKNRELC 88 (96)
T ss_dssp CCEEESSCCSCCCC
T ss_pred eEEEEecCCCccee
Confidence 99999999876544
No 23
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.6e-14 Score=108.57 Aligned_cols=80 Identities=20% Similarity=0.307 Sum_probs=69.1
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCC----CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG----GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~----g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
++++.|+|.+++ ..+|+++|+++|+.||.|.+|++...+. ...|||+|++.++|+.|++.|||..|.++ .|
T Consensus 3 ~~~~~l~v~nlp--~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l 77 (95)
T 2dnz_A 3 SGSSGLYVGSLH--FNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGR---PM 77 (95)
T ss_dssp SCCCEEEEESCC--TTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSS---CC
T ss_pred CCCcEEEEeCCC--CCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCc---EE
Confidence 457899999765 5899999999999999999999865321 13699999999999999999999999998 99
Q ss_pred EEEeeeCCC
Q 024708 133 HISYSRHTD 141 (264)
Q Consensus 133 rV~fSK~~~ 141 (264)
+|+|++...
T Consensus 78 ~V~~a~~~~ 86 (95)
T 2dnz_A 78 RVGHVTERL 86 (95)
T ss_dssp EEEESSCCC
T ss_pred EEEEccccc
Confidence 999987654
No 24
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.8e-14 Score=108.17 Aligned_cols=78 Identities=19% Similarity=0.307 Sum_probs=67.7
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCC----CceEEEEeCCHHHHHHHHHHhcCCeeCCCccce
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG----GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 131 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~----g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~ 131 (264)
.+++++|+|.+++ +.+|+++|+++|+.||.|.+|++...+. ...|||+|.+.++|+.|++.|||..|.++ .
T Consensus 13 ~~~~~~l~V~nlp--~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---~ 87 (94)
T 2e5h_A 13 APSKSTVYVSNLP--FSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGR---V 87 (94)
T ss_dssp CCCTTSEEEESCC--TTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTE---E
T ss_pred CCCCCEEEEECCC--CCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCc---E
Confidence 3567899999765 6999999999999999999999854321 13699999999999999999999999998 9
Q ss_pred EEEEeee
Q 024708 132 LHISYSR 138 (264)
Q Consensus 132 LrV~fSK 138 (264)
|+|+|||
T Consensus 88 l~v~~ak 94 (94)
T 2e5h_A 88 IKASIAI 94 (94)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999986
No 25
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.9e-14 Score=109.12 Aligned_cols=82 Identities=21% Similarity=0.233 Sum_probs=70.2
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC----CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccce
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 131 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~----~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~ 131 (264)
..+++.|+|.+++ +.+|+++|+++|+.||.|.+|+|...+ ....|||+|.+.++|+.|++.|||..|.++ .
T Consensus 5 ~~~~~~l~V~nlp--~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~ 79 (99)
T 1whw_A 5 SSGSGRLFVRNLS--YTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGR---M 79 (99)
T ss_dssp CCSCEEEEEECCC--TTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSC---E
T ss_pred CCCCCEEEEeCCC--CCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCc---E
Confidence 3467899999765 589999999999999999999975422 113699999999999999999999999998 9
Q ss_pred EEEEeeeCCCC
Q 024708 132 LHISYSRHTDL 142 (264)
Q Consensus 132 LrV~fSK~~~l 142 (264)
|+|+|++....
T Consensus 80 l~V~~a~~~~~ 90 (99)
T 1whw_A 80 LHVLPSTIKKE 90 (99)
T ss_dssp EEEEECCCCST
T ss_pred EEEEEcCCCcc
Confidence 99999988654
No 26
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=7.7e-15 Score=108.21 Aligned_cols=75 Identities=23% Similarity=0.296 Sum_probs=67.4
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHh-cCCeeCCCccceEEEE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEAL-EGHCIYDGGFCKLHIS 135 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~L-nG~~I~g~~~c~LrV~ 135 (264)
..++.|+|.+++ ..+|+++|+++|+.||.|.+|++...+ + .|||+|++.++|+.|++.| ||..|.|+ .|+|+
T Consensus 10 ~~~~~l~V~~l~--~~~t~~~l~~~f~~~G~i~~~~~~~~k-g-~afV~f~~~~~A~~a~~~l~~~~~~~g~---~l~v~ 82 (85)
T 2ytc_A 10 KTITTLYVGGLG--DTITETDLRNHFYQFGEIRTITVVQRQ-Q-CAFIQFATRQAAEVAAEKSFNKLIVNGR---RLNVK 82 (85)
T ss_dssp SSCCCEEEECCT--TTSCHHHHHHHHHTTSCEEEEEEEGGG-T-EEEEEESSHHHHHHHHHTTTTTCEETTE---ECCEE
T ss_pred CCccEEEEcCCC--CCCCHHHHHHHHHhCCCEeEEEEECCC-C-EEEEEECCHHHHHHHHHHhcCCeeECCC---EEEEE
Confidence 456899999775 589999999999999999999988644 4 6999999999999999999 99999998 99999
Q ss_pred eee
Q 024708 136 YSR 138 (264)
Q Consensus 136 fSK 138 (264)
|+|
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 986
No 27
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.56 E-value=9.8e-15 Score=107.87 Aligned_cols=79 Identities=9% Similarity=0.140 Sum_probs=65.8
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC-C---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-G---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~-~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
.+++.|+|.+++ +.+|+++|+++|+.||.|.+|++.... . ...|||+|.+.++|+.|++.|||..|.|+ .|
T Consensus 4 ~~~~~l~v~nlp--~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---~l 78 (87)
T 3bs9_A 4 GSHFHVFVGDLS--PEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR---QI 78 (87)
T ss_dssp --CEEEEEESCC--TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE---EC
T ss_pred CCceEEEEeCCC--CCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCe---EE
Confidence 356789998665 589999999999999999999975432 1 13699999999999999999999999998 99
Q ss_pred EEEeeeCC
Q 024708 133 HISYSRHT 140 (264)
Q Consensus 133 rV~fSK~~ 140 (264)
+|+|++.+
T Consensus 79 ~v~~a~~k 86 (87)
T 3bs9_A 79 RTNWATRK 86 (87)
T ss_dssp EEEEEC--
T ss_pred EEEecCCC
Confidence 99999864
No 28
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=2e-14 Score=107.67 Aligned_cols=77 Identities=13% Similarity=0.142 Sum_probs=68.6
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEE
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 135 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~ 135 (264)
..+++.|+|.+++ +.+|+++|+++|+.||.|.+|++. + + .|||+|.+.++|+.|++.|||..|.++ .|+|+
T Consensus 5 ~~~~~~l~V~nlp--~~~t~~~l~~~F~~~G~i~~v~~~--~-g-~afV~f~~~~~A~~A~~~l~g~~~~g~---~l~v~ 75 (90)
T 2dnq_A 5 SSGMVKLFIGNLP--REATEQEIRSLFEQYGKVLECDII--K-N-YGFVHIEDKTAAEDAIRNLHHYKLHGV---NINVE 75 (90)
T ss_dssp SSCCEEEEEESCC--SSCCHHHHHHHHHTSSCEEEEEEE--T-T-EEEEEESSHHHHHHHHHHHTTCBCSSC---BCEEE
T ss_pred CCCCeEEEEeCCC--CCCCHHHHHHHHHhCCCEEEEEEE--C-C-EEEEEECCHHHHHHHHHHhcCCccCCc---EEEEE
Confidence 3567899998665 699999999999999999999987 2 3 699999999999999999999999998 99999
Q ss_pred eeeCCC
Q 024708 136 YSRHTD 141 (264)
Q Consensus 136 fSK~~~ 141 (264)
|++...
T Consensus 76 ~a~~~~ 81 (90)
T 2dnq_A 76 ASKNKS 81 (90)
T ss_dssp CSSCCC
T ss_pred ECCCCC
Confidence 987754
No 29
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1e-14 Score=111.15 Aligned_cols=82 Identities=16% Similarity=0.241 Sum_probs=70.3
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcC-C---CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccce
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-N---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 131 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K-~---~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~ 131 (264)
..+++.|+|.+++ +.+|+++|+++|+.||.|.+|+|... . ....|||+|.+.++|+.|++.|||..|.++ .
T Consensus 9 ~~~~~~l~V~nLp--~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---~ 83 (102)
T 2cqb_A 9 ATTKRVLYVGGLA--EEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR---T 83 (102)
T ss_dssp CCCCSCEEEESCC--SSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTE---E
T ss_pred CCCCCEEEEeCCC--CCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCc---E
Confidence 4567899999765 58999999999999999999997543 1 123699999999999999999999999998 9
Q ss_pred EEEEeeeCCCC
Q 024708 132 LHISYSRHTDL 142 (264)
Q Consensus 132 LrV~fSK~~~l 142 (264)
|+|+|++....
T Consensus 84 l~V~~a~~~~~ 94 (102)
T 2cqb_A 84 IRVNLAKPMRI 94 (102)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEeCCCCCC
Confidence 99999987654
No 30
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.6e-14 Score=110.18 Aligned_cols=82 Identities=12% Similarity=0.271 Sum_probs=70.5
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC----CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccce
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 131 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~----~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~ 131 (264)
..+++.|+|.+++ +.+|+++|+++|+.||.|.+|+|...+ ....|||+|.+.++|+.|++.|||..|.++ .
T Consensus 9 ~~~~~~l~v~nLp--~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---~ 83 (102)
T 1x5s_A 9 ASDEGKLFVGGLS--FDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGR---Q 83 (102)
T ss_dssp CCCCSEEEEESCC--TTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSC---C
T ss_pred CCCCCEEEEECCC--CCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCe---E
Confidence 4567899999765 689999999999999999999986431 113699999999999999999999999998 9
Q ss_pred EEEEeeeCCCC
Q 024708 132 LHISYSRHTDL 142 (264)
Q Consensus 132 LrV~fSK~~~l 142 (264)
|+|+|++...-
T Consensus 84 l~v~~a~~~~~ 94 (102)
T 1x5s_A 84 IRVDQAGKSSD 94 (102)
T ss_dssp CEEEEEECCCC
T ss_pred EEEEECCCCCC
Confidence 99999987653
No 31
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3.7e-14 Score=108.46 Aligned_cols=83 Identities=14% Similarity=0.223 Sum_probs=70.9
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCC--CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEE
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG--GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 133 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~--g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~Lr 133 (264)
..+++.|+|.+++ +.+|+++|+++|+.||.|.+|+|...++ ...|||+|.+.++|+.|++.|||..|.++ .|+
T Consensus 12 ~~~~~~l~V~nlp--~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~ 86 (103)
T 2cq3_A 12 KSTPKRLHVSNIP--FRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGR---KIE 86 (103)
T ss_dssp SCCCCEEEEESCC--TTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTE---ECE
T ss_pred CCCCCEEEEeCCC--CCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE---EEE
Confidence 3567899999665 6899999999999999999999864321 23699999999999999999999999998 999
Q ss_pred EEeeeCCCCc
Q 024708 134 ISYSRHTDLS 143 (264)
Q Consensus 134 V~fSK~~~l~ 143 (264)
|+|++.....
T Consensus 87 v~~a~~~~~~ 96 (103)
T 2cq3_A 87 VNNATARVMT 96 (103)
T ss_dssp EEECCSSCCC
T ss_pred EEEcccCCCC
Confidence 9999886543
No 32
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.1e-14 Score=111.11 Aligned_cols=81 Identities=15% Similarity=0.208 Sum_probs=69.1
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCC-CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEE
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG-GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 134 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~-g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV 134 (264)
..+++.|+|.+++ +.+|+++|+++|+.||.|++|+|....+ ...|||+|++.++|+.|++.|||..|.++ .|+|
T Consensus 19 ~~~~~~l~V~nLp--~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---~l~V 93 (109)
T 1x4a_A 19 GNNDCRIYVGNLP--PDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY---RLRV 93 (109)
T ss_dssp CCCSSEEEEESCC--TTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTE---ECEE
T ss_pred CCCCCEEEEeCCC--CCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCe---EEEE
Confidence 3467899999765 6999999999999999999999854321 23699999999999999999999999998 9999
Q ss_pred EeeeCCC
Q 024708 135 SYSRHTD 141 (264)
Q Consensus 135 ~fSK~~~ 141 (264)
+|++...
T Consensus 94 ~~a~~~~ 100 (109)
T 1x4a_A 94 EFPRSGR 100 (109)
T ss_dssp ECCCCCC
T ss_pred EEcccCC
Confidence 9997754
No 33
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.55 E-value=8.9e-15 Score=111.56 Aligned_cols=76 Identities=18% Similarity=0.236 Sum_probs=67.9
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEe
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 136 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~f 136 (264)
+.++.|+|.+++ ..+|+++|+++|+.||.|.+|++.+.+ + .|||+|.+.++|+.|++.|||..|.|+ .|+|+|
T Consensus 25 ~~~~~l~V~nlp--~~~~~~~l~~~f~~~G~i~~~~~~~~~-g-~afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~V~~ 97 (101)
T 2la4_A 25 PRVTTAYIGNIP--HFATEADLIPLFQNFGFILDFKHYPEK-G-CCFIKYDTHEQAAVCIVALANFPFQGR---NLRTGW 97 (101)
T ss_dssp SSCCEEEEESCC--TTCCHHHHHHHHHTTSCCSEEEEETTT-T-EEEEECSSHHHHHHHHHHHTTCEETTE---ECCCCB
T ss_pred CCCCEEEEcCCC--cccCHHHHHHHHHhCCCEEEEEEecCC-C-EEEEEECCHHHHHHHHHHhCCCeECCe---EEEEEe
Confidence 446799999665 699999999999999999999988543 4 699999999999999999999999998 999999
Q ss_pred eeC
Q 024708 137 SRH 139 (264)
Q Consensus 137 SK~ 139 (264)
+|.
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 875
No 34
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.1e-14 Score=117.09 Aligned_cols=83 Identities=14% Similarity=0.177 Sum_probs=69.1
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCee---CCCccceE
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCI---YDGGFCKL 132 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I---~g~~~c~L 132 (264)
..+++.|+|.|.|+.+.+|+++|+++|++||.|.+|+|... ++ .|||+|++.++|+.|++.|||..| .++ -..|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-rg-faFV~f~~~~~A~~Ai~~lnG~~~~~~lg~-g~~l 98 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-KP-YSFARYRTTEESKRAYVTLNGKEVVDDLGQ-KITL 98 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-CS-CEEEEESSHHHHHHHHHHTTTCEEECTTSC-EEEC
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CC-EEEEEECCHHHHHHHHHHhCCCEEccccCC-CcEE
Confidence 35678999976667689999999999999999999998754 35 599999999999999999999988 222 2379
Q ss_pred EEEeeeCCC
Q 024708 133 HISYSRHTD 141 (264)
Q Consensus 133 rV~fSK~~~ 141 (264)
.|.|++...
T Consensus 99 ~v~~a~~~p 107 (114)
T 2cq2_A 99 YLNFVEKVQ 107 (114)
T ss_dssp EEEEESCCC
T ss_pred EEEecccCc
Confidence 999987543
No 35
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.3e-14 Score=107.48 Aligned_cols=79 Identities=20% Similarity=0.207 Sum_probs=68.2
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCC----CceEEEEeCCHHHHHHHHHHhcCCeeCCCccce
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG----GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 131 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~----g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~ 131 (264)
..++++|+|.+++ +.+|+++|+++|+.||.|.+|++..... ...|||+|++.++|+.|++.|||..|.++ .
T Consensus 12 ~~~~~~l~v~nlp--~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---~ 86 (95)
T 2cqc_A 12 PDPNCCLGVFGLS--LYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR---R 86 (95)
T ss_dssp CCGGGCEEEESCC--SSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE---E
T ss_pred CCCCCEEEEECCC--CCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE---E
Confidence 4567899999765 5899999999999999999999753221 13699999999999999999999999998 9
Q ss_pred EEEEeeeC
Q 024708 132 LHISYSRH 139 (264)
Q Consensus 132 LrV~fSK~ 139 (264)
|+|+||+.
T Consensus 87 l~v~~a~~ 94 (95)
T 2cqc_A 87 IRVSGPSS 94 (95)
T ss_dssp EEEECCSC
T ss_pred EEEEecCC
Confidence 99999874
No 36
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=1.5e-14 Score=113.60 Aligned_cols=78 Identities=15% Similarity=0.146 Sum_probs=68.9
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEee
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 137 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~fS 137 (264)
.+++|+|.|++ +.+|+++|.++|+.||.|.+|+|...+ + .|||+|.+.++|+.|++.|||..|.++ .|+|+|+
T Consensus 9 ~~~~l~V~nLp--~~~te~~L~~~F~~~G~i~~v~i~~~~-g-~afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~V~~a 81 (111)
T 1whx_A 9 SKTVILAKNLP--AGTLAAEIQETFSRFGSLGRVLLPEGG-I-TAIVEFLEPLEARKAFRHLAYSKFHHV---PLYLEWA 81 (111)
T ss_dssp EEEEEEEESCC--TTCCHHHHHHHHHTTSCEEEEECCSSS-S-CEEEEESCHHHHHHHHHHHTTCBSSSS---BCEEEEE
T ss_pred CCCEEEEeCCC--CCCCHHHHHHHHHhcCCEEEEEEeCCC-C-EEEEEeCCHHHHHHHHHHhCCCEECCe---EEEEEEC
Confidence 35789999665 689999999999999999999987533 4 599999999999999999999999998 9999999
Q ss_pred eCCCC
Q 024708 138 RHTDL 142 (264)
Q Consensus 138 K~~~l 142 (264)
+....
T Consensus 82 ~~~~~ 86 (111)
T 1whx_A 82 PIGVF 86 (111)
T ss_dssp ETTTT
T ss_pred CCCcc
Confidence 87554
No 37
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=2.3e-14 Score=109.89 Aligned_cols=81 Identities=17% Similarity=0.310 Sum_probs=70.1
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcC------CCCceEEEEeCCHHHHHHHHHHh-cCCeeCCCc
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK------NGGLQALIQYPDVQTAVVAKEAL-EGHCIYDGG 128 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K------~~g~~AfVqF~d~e~A~~A~~~L-nG~~I~g~~ 128 (264)
..+++.|+|.+++ +.+|+++|+++|+.||.|.+|+|... .++ .|||+|.+.++|+.|++.| ||..|.++
T Consensus 12 ~~~~~~l~V~nlp--~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g-~afV~f~~~~~a~~A~~~l~~~~~~~g~- 87 (107)
T 2cph_A 12 KQTTSKILVRNIP--FQANQREIRELFSTFGELKTVRLPKKMTGTGAHRG-FGFVDFITKQDAKKAFNALCHSTHLYGR- 87 (107)
T ss_dssp SSCCCCEEEESCC--TTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCS-EEEEEESSHHHHHHHHHHHHTCCBSSSC-
T ss_pred CCCCCEEEEeCCC--CcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCc-eEEEEECCHHHHHHHHHHhccCCeECCC-
Confidence 3567899999765 68999999999999999999998644 123 6999999999999999999 99999998
Q ss_pred cceEEEEeeeCCCC
Q 024708 129 FCKLHISYSRHTDL 142 (264)
Q Consensus 129 ~c~LrV~fSK~~~l 142 (264)
.|+|+|++...-
T Consensus 88 --~l~v~~a~~~~~ 99 (107)
T 2cph_A 88 --RLVLEWADSEVT 99 (107)
T ss_dssp --BCEEEECCCCCC
T ss_pred --EEEEEeCCCCCC
Confidence 999999987653
No 38
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2e-14 Score=109.39 Aligned_cols=79 Identities=19% Similarity=0.224 Sum_probs=68.3
Q ss_pred CCCcEEEEEEccCCcccCHHHHH----HHHhccCCeeEEEEEcCC--CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccc
Q 024708 57 PESNVLLASIENMQYAVTLDVLH----MVFSAFGPVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 130 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~----~LFs~yG~V~rIkif~K~--~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c 130 (264)
..++.|+|.+++ +.+|+++|. ++|+.||.|.+|+|...+ ++ .|||+|++.++|+.|++.|||..|.|+
T Consensus 7 ~~~~~l~V~nL~--~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg-~afV~f~~~~~A~~Ai~~l~g~~~~gr--- 80 (96)
T 2dgx_A 7 GNGADVQVSNID--YRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQL-KAVVQMENLQDAIGAVNSLHRYKIGSK--- 80 (96)
T ss_dssp SSCEEEEEESCC--TTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTC-CEEEEESSHHHHHHHHHHHTTEEETTE---
T ss_pred CCCCEEEEECCC--CCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCe-EEEEEECCHHHHHHHHHHhCCCEECCe---
Confidence 345789998665 699999999 999999999999986432 34 599999999999999999999999998
Q ss_pred eEEEEeeeCCC
Q 024708 131 KLHISYSRHTD 141 (264)
Q Consensus 131 ~LrV~fSK~~~ 141 (264)
.|+|++++...
T Consensus 81 ~l~V~~a~~~~ 91 (96)
T 2dgx_A 81 KILVSLATGAS 91 (96)
T ss_dssp EEEEEECCCSS
T ss_pred EEEEEEcCCCC
Confidence 99999997653
No 39
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=3.2e-14 Score=110.26 Aligned_cols=78 Identities=17% Similarity=0.345 Sum_probs=69.9
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEe
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 136 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~f 136 (264)
..++.|+|.+++ ..+|+++|+++|+.||.|.+|+|...+ + .|||+|.+.++|+.|++.|||..|.++ .|+|+|
T Consensus 23 ~~~~~l~V~nl~--~~~t~~~l~~~F~~~G~i~~v~i~~~~-g-~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~ 95 (109)
T 1x4g_A 23 PKNCTVYCGGIA--SGLTDQLMRQTFSPFGQIMEIRVFPEK-G-YSFVRFSTHESAAHAIVSVNGTTIEGH---VVKCYW 95 (109)
T ss_dssp SSCCEEEEECCS--SCCCHHHHHHHHHHHSCEEEEEEETTT-T-EEEEEESSHHHHHHHHHHHTTCEETTE---ECEEEC
T ss_pred CCCcEEEEeCCC--CCCCHHHHHHHHHhcCCeEEEEEeCCC-C-EEEEEECCHHHHHHHHHHcCCCEECCc---EEEEEe
Confidence 456799998765 599999999999999999999988654 4 699999999999999999999999998 999999
Q ss_pred eeCCC
Q 024708 137 SRHTD 141 (264)
Q Consensus 137 SK~~~ 141 (264)
++...
T Consensus 96 a~~~~ 100 (109)
T 1x4g_A 96 GKESP 100 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98765
No 40
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.4e-14 Score=107.64 Aligned_cols=76 Identities=20% Similarity=0.243 Sum_probs=68.1
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEe
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 136 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~f 136 (264)
.+++.|+|.+++ +.+|+++|+++|+.||.|.+|++.+ + .|||+|++.++|+.|++.|||..|.++ .|+|+|
T Consensus 8 ~~~~~l~V~nLp--~~~t~~~l~~~F~~~G~v~~v~~~~---~-~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~V~~ 78 (92)
T 2dgt_A 8 KASTKLHVGNIS--PTCTNQELRAKFEEYGPVIECDIVK---D-YAFVHMERAEDAVEAIRGLDNTEFQGK---RMHVQL 78 (92)
T ss_dssp CSSEEEEEESCC--SSCCHHHHHHHHHTTSCCCEEEECS---S-EEEEEESCHHHHHHHHHHHTTEEETTE---EEEEEE
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHhcCCeEEEEEEC---C-EEEEEECCHHHHHHHHHHhCCCeeCCc---EEEEEE
Confidence 457899999665 6899999999999999999999873 2 699999999999999999999999998 999999
Q ss_pred eeCCC
Q 024708 137 SRHTD 141 (264)
Q Consensus 137 SK~~~ 141 (264)
++...
T Consensus 79 a~~~~ 83 (92)
T 2dgt_A 79 STSRL 83 (92)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 97654
No 41
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.55 E-value=2.7e-14 Score=109.42 Aligned_cols=76 Identities=21% Similarity=0.239 Sum_probs=67.8
Q ss_pred CCCCcEEEEEEccCCc-ccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEE
Q 024708 56 EPESNVLLASIENMQY-AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 134 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~-~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV 134 (264)
.++++.|+|.+++ + .+|+++|+++|+.||.|.+|++. + + .|||+|++.++|+.|++.|||..|.|+ .|+|
T Consensus 19 ~~~~~~l~V~nLp--~~~~t~~~L~~~F~~~G~v~~v~i~--~-g-~afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~V 89 (97)
T 2xnq_A 19 SHMKSRLFIGNLP--LKNVSKEDLFRIFSPYGHIMQINIK--N-A-FGFIQFDNPQSVRDAIEXESQEMNFGK---KLIL 89 (97)
T ss_dssp CCTTCEEEEESCC--SSCCCHHHHHHHHGGGSCEEEEEEC--S-S-EEEEEESSHHHHHHHHHHHTTSEETTE---ECEE
T ss_pred CCCCCEEEEeCCC--cccCCHHHHHHHHHhcCCEEEEEEe--C-C-EEEEEECCHHHHHHHHHHcCCCEECCE---EEEE
Confidence 4668899998664 6 89999999999999999999983 2 4 699999999999999999999999998 9999
Q ss_pred EeeeCC
Q 024708 135 SYSRHT 140 (264)
Q Consensus 135 ~fSK~~ 140 (264)
+|++..
T Consensus 90 ~~a~~~ 95 (97)
T 2xnq_A 90 EVSSSN 95 (97)
T ss_dssp EECCCC
T ss_pred EecCCC
Confidence 999764
No 42
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=2.4e-14 Score=109.16 Aligned_cols=75 Identities=19% Similarity=0.296 Sum_probs=66.9
Q ss_pred EEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEeeeCC
Q 024708 61 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHT 140 (264)
Q Consensus 61 VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~fSK~~ 140 (264)
.|+|.+++ +.+|+++|.++|+.||.|.+|++....++ .|||+|.+.++|+.|++.|||..|.++ .|+|+|++..
T Consensus 2 ~l~V~nLp--~~~t~~~l~~~F~~~G~i~~v~i~~~~~g-~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~V~~a~~~ 75 (101)
T 2hvz_A 2 KVYVGNLG--TGAGKGELERAFSYYGPLRTVWIARNPPG-FAFVEFEDPRDAEDAVRGLDGKVICGS---RVRVELSTGM 75 (101)
T ss_dssp EEEEECCC--SSCSHHHHHHHHHHHCCCSEEEEESSSSS-EEEEECSSHHHHHHHHHHHHHSCSSSC---CCEEEESSSC
T ss_pred EEEEeCCC--CCCCHHHHHHHHHhcCCeEEEEEeeCCCC-EEEEEECCHHHHHHHHHHHCCCeECCc---EEEEEEccCC
Confidence 57888665 68999999999999999999998765334 699999999999999999999999998 8999999886
Q ss_pred C
Q 024708 141 D 141 (264)
Q Consensus 141 ~ 141 (264)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 43
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.54 E-value=1.5e-14 Score=112.14 Aligned_cols=73 Identities=19% Similarity=0.204 Sum_probs=64.7
Q ss_pred CcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEeee
Q 024708 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSR 138 (264)
Q Consensus 59 s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~fSK 138 (264)
+.-|+|.|+. +.+|+++|+++|++||+|+++++...+ | .|||+|.+.++|++|++.|||.+++++ +|+|+++.
T Consensus 7 ~~wL~VgNL~--~~~te~~L~~lF~q~G~V~~~~l~~~k-G-faFVey~~~~eA~~Ai~~Ln~~~l~gr---~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLT--AQIDGPTLRTLCMQHGPLVSFHPYLNQ-G-IALCKYTTREEANKAQMALNNCVLANT---TIFAESPS 79 (89)
T ss_dssp CCEEEEECCC--TTCCCHHHHHHHHHHSCEEEEEEETTT-T-EEEEEESSHHHHHHHHHHHTTEEETTE---EEEEECCC
T ss_pred cceEEEeCCC--ccCCHHHHHHHHHhhCCEEEEEEcCCC-c-EEEEEECCHHHHHHHHHHhcCCEECCc---EEEEEECC
Confidence 4556777554 799999999999999999999987643 5 599999999999999999999999999 99999984
No 44
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=3.5e-14 Score=107.08 Aligned_cols=79 Identities=15% Similarity=0.160 Sum_probs=68.1
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEE-EEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEe
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIA-MFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 136 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIk-if~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~f 136 (264)
.++.|+|.+++ +.+|+++|+++|+.||.|.+|+ +...+....|||+|.+.++|+.|++.|||..|.++ +|+|+|
T Consensus 14 ~~~~l~V~nlp--~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~---~l~V~~ 88 (96)
T 2e44_A 14 RIRKLQIRNIP--PHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENF---TLKVAY 88 (96)
T ss_dssp SCCCEEEEEEC--SSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSC---BCEEEE
T ss_pred CCCEEEEEcCC--CCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCc---EEEEEE
Confidence 46789999876 5999999999999999999994 54433223499999999999999999999999998 999999
Q ss_pred eeCCC
Q 024708 137 SRHTD 141 (264)
Q Consensus 137 SK~~~ 141 (264)
++...
T Consensus 89 a~~~~ 93 (96)
T 2e44_A 89 IPDEM 93 (96)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 98764
No 45
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.54 E-value=3.7e-14 Score=108.65 Aligned_cols=85 Identities=15% Similarity=0.222 Sum_probs=70.1
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCC---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
..+++.|+|.+++ +.+|+++|.++|+.||.|.+|+|..... ...|||+|.+.++|+.|++.|||..|.++....|
T Consensus 12 ~~~~~~l~v~nLp--~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 12 GGRDRKLFVGMLN--KQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp CCCCCEEEEESCC--TTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred CCCCCEEEEeCCC--CCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 3567899999765 6999999999999999999999764321 1369999999999999999999999998201289
Q ss_pred EEEeeeCCCC
Q 024708 133 HISYSRHTDL 142 (264)
Q Consensus 133 rV~fSK~~~l 142 (264)
+|+|++....
T Consensus 90 ~V~~a~~~~~ 99 (105)
T 2dnh_A 90 VVKFADTDKE 99 (105)
T ss_dssp EEEESCSSCC
T ss_pred EEEECccCcc
Confidence 9999987654
No 46
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.54 E-value=2.8e-14 Score=107.25 Aligned_cols=79 Identities=16% Similarity=0.280 Sum_probs=68.2
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCC---ceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGG---LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g---~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
..+++.|+|.+++ +.+|+++|+++|+.||.|.+|+|.....+ ..|||+|.+.++|+.|++.|||..|.++ .|
T Consensus 13 ~~~~~~l~v~nlp--~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l 87 (95)
T 2ywk_A 13 EEADRTVFVGNLE--ARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGR---PI 87 (95)
T ss_dssp TTGGGEEEEECCC--TTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTE---EC
T ss_pred CCCCCEEEEECCC--CCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCC---EE
Confidence 3567899999775 58999999999999999999997643211 3699999999999999999999999998 99
Q ss_pred EEEeeeC
Q 024708 133 HISYSRH 139 (264)
Q Consensus 133 rV~fSK~ 139 (264)
+|+|++.
T Consensus 88 ~V~~a~~ 94 (95)
T 2ywk_A 88 NVSGPSS 94 (95)
T ss_dssp EEECCCC
T ss_pred EEEEcCC
Confidence 9999874
No 47
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.54 E-value=2.8e-14 Score=105.42 Aligned_cols=78 Identities=18% Similarity=0.212 Sum_probs=67.2
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEc-C-----CCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccce
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD-K-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 131 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~-K-----~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~ 131 (264)
.++.|+|.+++ +.+|+++|.++|+.||.|.+|++.. + .++ .|||+|.+.++|+.|++.|||..|.|+ .
T Consensus 3 ~~~~l~V~nlp--~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g-~afV~f~~~~~a~~A~~~l~g~~~~g~---~ 76 (88)
T 4a8x_A 3 KPTKVHIGRLT--RNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKG-YAYVEFENPDEAEKALKHMDGGQIDGQ---E 76 (88)
T ss_dssp CCCEEEEECCC--TTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECS-EEEEEESSHHHHHHHHHHHTTCEETTE---E
T ss_pred CCCEEEEeCCC--CCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCc-EEEEEEecHHHHHHHHHHcCCCeECCe---E
Confidence 35789999765 6999999999999999999999632 2 233 699999999999999999999999998 9
Q ss_pred EEEEeeeCCC
Q 024708 132 LHISYSRHTD 141 (264)
Q Consensus 132 LrV~fSK~~~ 141 (264)
|+|++++...
T Consensus 77 l~v~~a~~~~ 86 (88)
T 4a8x_A 77 ITATAVLAPW 86 (88)
T ss_dssp CEEEEECCCC
T ss_pred EEEEECCCCC
Confidence 9999997653
No 48
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.54 E-value=1.3e-14 Score=109.44 Aligned_cols=81 Identities=25% Similarity=0.402 Sum_probs=70.5
Q ss_pred CCCcEEEEEEccCCcccCHHHHH----HHHhccCCeeEEEEEc--CCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccc
Q 024708 57 PESNVLLASIENMQYAVTLDVLH----MVFSAFGPVQKIAMFD--KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 130 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~----~LFs~yG~V~rIkif~--K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c 130 (264)
++++.|+|.+++ +.+|+++|. ++|+.||.|.+|++.+ +.++ .|||+|.+.++|+.|++.|||..|.|+
T Consensus 6 ~~~~~l~V~nLp--~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g-~afV~f~~~~~A~~A~~~l~g~~~~g~--- 79 (97)
T 1nu4_A 6 RPNHTIYINNLN--EKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRG-QAFVIFKEVSSATNALRSMQGFPFYDK--- 79 (97)
T ss_dssp CCCSEEEEESCC--TTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTT-CEEEEESSHHHHHHHHHHHTTCEETTE---
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCc-EEEEEeCCHHHHHHHHHHhCCCEECCc---
Confidence 567899999765 699999999 9999999999999863 2234 699999999999999999999999987
Q ss_pred eEEEEeeeCCCCc
Q 024708 131 KLHISYSRHTDLS 143 (264)
Q Consensus 131 ~LrV~fSK~~~l~ 143 (264)
.|+|+|++...-.
T Consensus 80 ~l~v~~a~~~~~~ 92 (97)
T 1nu4_A 80 PMRIQYAKTDSDI 92 (97)
T ss_dssp ECEEEECSSCCTH
T ss_pred EEEEEEccCCCcc
Confidence 9999999887644
No 49
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1.7e-14 Score=110.37 Aligned_cols=79 Identities=22% Similarity=0.297 Sum_probs=68.8
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccce
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 131 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~-----~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~ 131 (264)
.+++.|+|.+++ +.+|+++|+++|+.||.|.+|+|...+ ++ .|||+|.+.++|+.|++.|||..|.++ .
T Consensus 11 ~~~~~l~V~nLp--~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g-~afV~f~~~~~A~~A~~~l~g~~~~g~---~ 84 (103)
T 2dnm_A 11 DGMITLKVDNLT--YRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRG-FAFVRFHDRRDAQDAEAAMDGAELDGR---E 84 (103)
T ss_dssp SCCCEEEEESCC--TTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCS-CEEEEESSSSHHHHHHHHHSSCCBTTB---C
T ss_pred CCCeEEEEeCCC--CCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCe-EEEEEECCHHHHHHHHHHcCCCEECCc---E
Confidence 457899999765 589999999999999999999975321 23 699999999999999999999999998 9
Q ss_pred EEEEeeeCCC
Q 024708 132 LHISYSRHTD 141 (264)
Q Consensus 132 LrV~fSK~~~ 141 (264)
|+|+|++...
T Consensus 85 l~V~~a~~~~ 94 (103)
T 2dnm_A 85 LRVQVARYGR 94 (103)
T ss_dssp CEEEECSSCC
T ss_pred EEEEECCcCC
Confidence 9999998754
No 50
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=2e-14 Score=108.81 Aligned_cols=80 Identities=24% Similarity=0.318 Sum_probs=68.5
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCC-------CceEEEEeCCHHHHHHHHHHhcCCeeCCCcc
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG-------GLQALIQYPDVQTAVVAKEALEGHCIYDGGF 129 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~-------g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~ 129 (264)
.+++.|+|.+++ +.+|+++|+++|+.||.|.+|++..+.. ...|||+|.+.++|+.|++.|||..|.++
T Consensus 3 ~~~~~l~V~nLp--~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-- 78 (98)
T 2cpf_A 3 SGSSGLFIKNLN--FSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGH-- 78 (98)
T ss_dssp CCCCCEEEESCC--TTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTE--
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCe--
Confidence 457899999765 6899999999999999999999753211 13699999999999999999999999998
Q ss_pred ceEEEEeeeCCC
Q 024708 130 CKLHISYSRHTD 141 (264)
Q Consensus 130 c~LrV~fSK~~~ 141 (264)
.|+|+|++...
T Consensus 79 -~l~V~~a~~~~ 89 (98)
T 2cpf_A 79 -KLEVRISERAT 89 (98)
T ss_dssp -ECEEECSSCSS
T ss_pred -EEEEEEccCCC
Confidence 99999987754
No 51
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=4.6e-14 Score=107.40 Aligned_cols=80 Identities=20% Similarity=0.284 Sum_probs=68.8
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCC---ceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGG---LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 133 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g---~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~Lr 133 (264)
.+++.|+|.+++ +.+|+++|.++|+.||.|.+|++...+.+ ..|||+|.+.++|+.|++.|||..|.++ .|+
T Consensus 15 ~~~~~l~v~nlp--~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~ 89 (100)
T 2do4_A 15 LEKHKLFISGLP--FSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKEN---IIK 89 (100)
T ss_dssp CCCSCEEEESCC--TTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSC---EEE
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCE---EEE
Confidence 456789998665 69999999999999999999997643211 3699999999999999999999999998 999
Q ss_pred EEeeeCCC
Q 024708 134 ISYSRHTD 141 (264)
Q Consensus 134 V~fSK~~~ 141 (264)
|+|++...
T Consensus 90 v~~a~~~~ 97 (100)
T 2do4_A 90 VAISNSGP 97 (100)
T ss_dssp EEECCCCS
T ss_pred EEECCCCC
Confidence 99998754
No 52
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=6.9e-14 Score=108.56 Aligned_cols=77 Identities=10% Similarity=0.105 Sum_probs=68.5
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCC-----Cccce
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD-----GGFCK 131 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g-----~~~c~ 131 (264)
.....|+|.+|+ +.+|+++|.++|+.||.|.+|+|... + .|||+|++.++|+.|++.|||..|.+ + .
T Consensus 13 ~~~~~l~V~nLp--~~~t~~~l~~~F~~~G~i~~~~i~~~--g-~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~---~ 84 (108)
T 1x4c_A 13 RSENRVVVSGLP--PSGSWQDLKDHMREAGDVCYADVYRD--G-TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA---Y 84 (108)
T ss_dssp SCCCEEEEESCC--SSCCHHHHHHHHGGGSCEEEEEEETT--T-EEEEEESSHHHHHHHHHHSSSEEEECTTSCEE---E
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHhcCCEeEEEEecC--C-EEEEEECCHHHHHHHHHHHCcCCccCCcCcce---E
Confidence 345789998665 69999999999999999999998765 4 69999999999999999999999998 6 8
Q ss_pred EEEEeeeCCC
Q 024708 132 LHISYSRHTD 141 (264)
Q Consensus 132 LrV~fSK~~~ 141 (264)
|+|++++...
T Consensus 85 i~V~~a~~~~ 94 (108)
T 1x4c_A 85 IRVKVDGPRS 94 (108)
T ss_dssp EEEEESSCCS
T ss_pred EEEEeCCCCC
Confidence 9999998754
No 53
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.53 E-value=3.9e-14 Score=103.72 Aligned_cols=76 Identities=14% Similarity=0.152 Sum_probs=65.5
Q ss_pred cEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcC-CC---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEE
Q 024708 60 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-NG---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 135 (264)
Q Consensus 60 ~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K-~~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~ 135 (264)
..|+|.+++ +.+|+++|.++|+.||.|.+|++... .. ...|||+|.+.++|+.|++.|||..|.|+ .|+|+
T Consensus 2 ~~l~V~nlp--~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~---~l~v~ 76 (83)
T 3md1_A 2 FNLFVGDLN--VNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR---PLRIN 76 (83)
T ss_dssp EEEEEECCC--TTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTE---ECEEE
T ss_pred eEEEEeCCC--CCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCc---EEEEE
Confidence 468888665 68999999999999999999997533 21 13699999999999999999999999988 99999
Q ss_pred eeeCC
Q 024708 136 YSRHT 140 (264)
Q Consensus 136 fSK~~ 140 (264)
|++..
T Consensus 77 ~a~~~ 81 (83)
T 3md1_A 77 WAAKL 81 (83)
T ss_dssp ECCCC
T ss_pred ecCcC
Confidence 99865
No 54
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.53 E-value=2.7e-14 Score=106.75 Aligned_cols=81 Identities=14% Similarity=0.190 Sum_probs=69.5
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCC--CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEE
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG--GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 133 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~--g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~Lr 133 (264)
..+++.|+|.+++ +.+|+++|+++|+.||.|.+|++..+.+ ...|||+|.+.++|+.|++.|||..|.++ .|+
T Consensus 5 ~~~~~~l~V~nlp--~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~---~l~ 79 (92)
T 2dgv_A 5 SSGACQIFVRNLP--FDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGR---EID 79 (92)
T ss_dssp SSSCCEEEECSCC--TTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTB---CCC
T ss_pred CCCCcEEEEeCCC--CCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCc---EEE
Confidence 3467889998665 6999999999999999999999865321 13699999999999999999999999998 999
Q ss_pred EEeeeCCC
Q 024708 134 ISYSRHTD 141 (264)
Q Consensus 134 V~fSK~~~ 141 (264)
|+|++...
T Consensus 80 v~~a~~~~ 87 (92)
T 2dgv_A 80 VRIDRNAS 87 (92)
T ss_dssp CEECSCCS
T ss_pred EEEcCCCC
Confidence 99998764
No 55
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4.3e-14 Score=108.25 Aligned_cols=82 Identities=13% Similarity=0.193 Sum_probs=70.7
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccc
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 130 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~-----~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c 130 (264)
..+++.|+|.+++ +.+|+++|+++|+.||.|.+|+|.... ++ .|||+|.+.++|+.|++.|||..|.++
T Consensus 12 ~~~~~~l~V~nlp--~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g-~afV~f~~~~~a~~A~~~l~g~~~~g~--- 85 (105)
T 1x5u_A 12 RNQDATVYVGGLD--EKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQG-YGFVEFLSEEDADYAIKIMDMIKLYGK--- 85 (105)
T ss_dssp CCTTTEEEEECCC--TTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCS-CEEEEESSHHHHHHHHHHSSSCBCSSC---
T ss_pred CCCCCEEEEeCCC--CCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCc-EEEEEECCHHHHHHHHHHhCCCeECCe---
Confidence 3567899999765 589999999999999999999975432 23 699999999999999999999999998
Q ss_pred eEEEEeeeCCCCc
Q 024708 131 KLHISYSRHTDLS 143 (264)
Q Consensus 131 ~LrV~fSK~~~l~ 143 (264)
.|+|+|++...-+
T Consensus 86 ~l~v~~a~~~~~~ 98 (105)
T 1x5u_A 86 PIRVNKASAHNKN 98 (105)
T ss_dssp BCEEEETTTTSCC
T ss_pred EEEEEECCCCCcC
Confidence 9999999876543
No 56
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.53 E-value=5.6e-14 Score=117.87 Aligned_cols=123 Identities=28% Similarity=0.321 Sum_probs=88.3
Q ss_pred eEEEEeecCCCcceeecCC----CCCCCCCCCCCCCCcccccccCCccccCCCCCCCCCCcEEEEEEccCCcccCHHHHH
Q 024708 4 CTLRITYSAHTDLSVKFQS----HRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLH 79 (264)
Q Consensus 4 CtL~I~ySk~~~L~Vk~nn----~~srDYTnp~Lp~~~~al~~~g~~~~~~~G~~~~~~s~VL~V~~lN~~~~VT~d~L~ 79 (264)
..|+|+|++.....+.... ...+||......+... ... ..-....+++++|+|.+++ +.+|+++|+
T Consensus 69 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-------~~~-~~~~~~~~~~~~l~v~nl~--~~~~~~~l~ 138 (198)
T 1qm9_A 69 KPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKK-------PGS-KNFQNIFPPSATLHLSNIP--PSVSEEDLK 138 (198)
T ss_dssp CCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSS-------CCC-CCCSCCCCCCCEEEECCCC--TTCCHHHHH
T ss_pred eEEEEEEecCCCcCCCCcCCccccccccccCCchhhccC-------ccc-cccccCCCCccEEEEeCCC--CCCCHHHHH
Confidence 5788999887765443321 2334444333221111 000 0001224678899998665 689999999
Q ss_pred HHHhccC-CeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeC-CCccceEEEEeeeCC
Q 024708 80 MVFSAFG-PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY-DGGFCKLHISYSRHT 140 (264)
Q Consensus 80 ~LFs~yG-~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~-g~~~c~LrV~fSK~~ 140 (264)
++|+.|| .|.+|+++.++++ .|||+|.+.++|..|++.|||..|. ++ .|+|+|++.+
T Consensus 139 ~~f~~~G~~v~~v~i~~~~~g-~afV~f~~~~~A~~A~~~l~g~~~~~g~---~l~v~~a~~~ 197 (198)
T 1qm9_A 139 VLFSSNGGVVKGFKFFQKDRK-MALIQMGSVEEAVQALIDLHNHDLGENH---HLRVSFSKST 197 (198)
T ss_dssp HHHHHTTSCCCEEEESSTTSS-CEEEECSSHHHHHHHHHHHTSSCCSSCC---SCCEEEECCC
T ss_pred HHHHHcCCCceEEEEEeCCCc-EEEEEeCCHHHHHHHHHHhcCCccCCCC---eEEEEeeccc
Confidence 9999999 9999999765555 6999999999999999999999998 66 9999999864
No 57
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.9e-14 Score=108.32 Aligned_cols=81 Identities=14% Similarity=0.203 Sum_probs=70.0
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCC--CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG--GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 134 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~--g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV 134 (264)
.+++.|+|.+++ +.+|+++|+++|+.||.|.+|+|....+ ...|||+|.+.++|+.|++.|||..|.++ .|+|
T Consensus 13 ~~~~~l~V~nlp--~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---~l~V 87 (103)
T 2d9p_A 13 YQVVNLYVKNLD--DGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK---PLYV 87 (103)
T ss_dssp SSCCCEEEECCC--TTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSS---BCEE
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCc---EEEE
Confidence 467899999765 5899999999999999999999864311 13699999999999999999999999998 9999
Q ss_pred EeeeCCCC
Q 024708 135 SYSRHTDL 142 (264)
Q Consensus 135 ~fSK~~~l 142 (264)
+|++....
T Consensus 88 ~~a~~~~~ 95 (103)
T 2d9p_A 88 ALAQRKEE 95 (103)
T ss_dssp EECSSCCC
T ss_pred EEeccccc
Confidence 99987654
No 58
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=4.8e-14 Score=105.53 Aligned_cols=76 Identities=16% Similarity=0.184 Sum_probs=68.0
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEe
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 136 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~f 136 (264)
.+++.|+|.+++ +.+|+++|.++|+.||.|.+|++.+ + .|||+|.+.++|+.|++.|||..|.++ .|+|+|
T Consensus 7 ~~~~~l~V~nlp--~~~t~~~l~~~F~~~G~v~~~~~~~---~-~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~ 77 (90)
T 2dnp_A 7 GNTWKIFVGNVS--AACTSQELRSLFERRGRVIECDVVK---D-YAFVHMEKEADAKAAIAQLNGKEVKGK---RINVEL 77 (90)
T ss_dssp CCSCCEEEESCC--TTCCHHHHHHHHHHHSCEEEEEECS---S-CEEEEESCHHHHHHHHHHHTTCEETTE---ECEEEE
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHcCCCEEEEEEEC---C-EEEEEECCHHHHHHHHHHhCCCEECCc---EEEEEE
Confidence 457889999765 5899999999999999999999873 2 699999999999999999999999998 999999
Q ss_pred eeCCC
Q 024708 137 SRHTD 141 (264)
Q Consensus 137 SK~~~ 141 (264)
++...
T Consensus 78 a~~~~ 82 (90)
T 2dnp_A 78 STKGQ 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 97763
No 59
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.3e-14 Score=107.93 Aligned_cols=81 Identities=20% Similarity=0.313 Sum_probs=69.2
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEE-EEEcC-C---CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccce
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI-AMFDK-N---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 131 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rI-kif~K-~---~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~ 131 (264)
.+++.|+|.+++ +.+|+++|.++|+.||.|.+| +|... . ....|||+|++.++|+.|++.|||..|.++ .
T Consensus 3 ~~~~~l~V~nLp--~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---~ 77 (96)
T 1x5t_A 3 SGSSGIFIGNLD--PEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR---P 77 (96)
T ss_dssp SCCCEEEEECCC--TTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTE---E
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCE---E
Confidence 457899999765 589999999999999999999 77543 1 123699999999999999999999999998 9
Q ss_pred EEEEeeeCCCC
Q 024708 132 LHISYSRHTDL 142 (264)
Q Consensus 132 LrV~fSK~~~l 142 (264)
|+|+|++...-
T Consensus 78 l~v~~a~~~~~ 88 (96)
T 1x5t_A 78 ITVSYAFKKDS 88 (96)
T ss_dssp CEEEESCCCCC
T ss_pred EEEEEecccCC
Confidence 99999987653
No 60
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=6.2e-14 Score=106.49 Aligned_cols=80 Identities=20% Similarity=0.186 Sum_probs=68.4
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC----CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~----~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
.+++.|+|.+++ +.+|+++|+++|+.||.|.+|+|...+ ....|||+|++.++|+.|++ |||..|.++ .|
T Consensus 8 ~~~~~l~V~nlp--~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~---~l 81 (99)
T 2dgs_A 8 SKSNKIFVGGIP--HNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGK---KV 81 (99)
T ss_dssp SSCCEEEEESCC--SSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSC---BC
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCe---EE
Confidence 457899999765 589999999999999999999986431 12369999999999999999 999999998 99
Q ss_pred EEEeeeCCCC
Q 024708 133 HISYSRHTDL 142 (264)
Q Consensus 133 rV~fSK~~~l 142 (264)
+|+|++...-
T Consensus 82 ~V~~a~~~~~ 91 (99)
T 2dgs_A 82 EVKRAEPRDS 91 (99)
T ss_dssp EEEECCCCCC
T ss_pred EEEECCCCcc
Confidence 9999987543
No 61
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.53 E-value=3.2e-14 Score=108.10 Aligned_cols=78 Identities=22% Similarity=0.258 Sum_probs=68.1
Q ss_pred CCCCcEEEEEEccCCc-ccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEE
Q 024708 56 EPESNVLLASIENMQY-AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 134 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~-~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV 134 (264)
.++++.|+|.+++ + .+|+++|+++|+.||.|.+|++. + + .|||+|.+.++|+.|++.|||..|.++ .|+|
T Consensus 7 ~~~~~~l~V~nlp--~~~~t~~~l~~~F~~~G~v~~v~i~--~-g-~afV~f~~~~~A~~A~~~l~g~~~~g~---~l~V 77 (96)
T 2kvi_A 7 IPPKSRLFIGNLP--LKNVSKEDLFRIFSPYGHIMQINIK--N-A-FGFIQFDNPQSVRDAIECESQEMNFGK---KLIL 77 (96)
T ss_dssp --CCEEEEEESST--TSCCCHHHHHHHHTTTCCCCEEEEE--T-T-EEEEEESCHHHHHHHHHHHTCSSCBTT---TBCE
T ss_pred CCCCCEEEEeCCC--cccCCHHHHHHHHHhcCCEEEEEEe--C-C-EEEEEECCHHHHHHHHHHcCCCeeCCc---EEEE
Confidence 3567899998654 6 89999999999999999999985 2 4 699999999999999999999999998 9999
Q ss_pred EeeeCCCC
Q 024708 135 SYSRHTDL 142 (264)
Q Consensus 135 ~fSK~~~l 142 (264)
+|++...-
T Consensus 78 ~~a~~~~~ 85 (96)
T 2kvi_A 78 EVSSSNAR 85 (96)
T ss_dssp EEEECCCC
T ss_pred EEcCcCCC
Confidence 99987653
No 62
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.53 E-value=6e-14 Score=109.32 Aligned_cols=82 Identities=9% Similarity=0.139 Sum_probs=70.1
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC-C---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccce
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-G---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 131 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~-~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~ 131 (264)
..+++.|+|.+++ +.+|+++|+++|+.||.|.+|+|.... . ...|||+|.+.++|+.|++.|||..|.++ .
T Consensus 12 ~~~~~~l~V~nlp--~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~ 86 (115)
T 2dgo_A 12 TSNHFHVFVGDLS--PEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR---Q 86 (115)
T ss_dssp STTCEEEEEESCC--TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTE---E
T ss_pred CCCCcEEEEeCCC--CCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCE---E
Confidence 3567899998665 699999999999999999999976432 1 13699999999999999999999999998 9
Q ss_pred EEEEeeeCCCC
Q 024708 132 LHISYSRHTDL 142 (264)
Q Consensus 132 LrV~fSK~~~l 142 (264)
|+|+|++...-
T Consensus 87 l~V~~a~~~~~ 97 (115)
T 2dgo_A 87 IRTNWATRKPP 97 (115)
T ss_dssp CEEEESSCCCC
T ss_pred EEEEEccCCCC
Confidence 99999987654
No 63
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4.1e-14 Score=108.55 Aligned_cols=80 Identities=18% Similarity=0.252 Sum_probs=68.6
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCC----CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG----GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~----g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
.++++|+|.+++ +.+|+++|+++|+.||.|.+|++...+. ...|||+|.+.++|+.|++.|||..|.|+ .|
T Consensus 21 ~~~~~l~V~nlp--~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l 95 (106)
T 1p27_B 21 VEGWILFVTGVH--EEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ---PI 95 (106)
T ss_dssp TTBEEEEEECCC--TTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSS---BC
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCc---EE
Confidence 456889999765 5999999999999999999999753221 13699999999999999999999999998 99
Q ss_pred EEEeeeCCC
Q 024708 133 HISYSRHTD 141 (264)
Q Consensus 133 rV~fSK~~~ 141 (264)
+|+|++...
T Consensus 96 ~V~~a~~~~ 104 (106)
T 1p27_B 96 SVDWCFVRG 104 (106)
T ss_dssp EEEESEESS
T ss_pred EEEeecCCC
Confidence 999997653
No 64
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.52 E-value=6.4e-14 Score=107.65 Aligned_cols=78 Identities=19% Similarity=0.258 Sum_probs=67.5
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCC---ceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGG---LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g---~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
..+++.|+|.+++ +.+|+++|.++|+.||.|.+|+|.....+ ..|||+|.+.++|+.|++.|||..|.++ .|
T Consensus 26 ~~~~~~l~V~nlp--~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l 100 (107)
T 3ulh_A 26 VETGGKLLVSNLD--FGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGR---PM 100 (107)
T ss_dssp CCCSEEEEEESCC--TTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE---EC
T ss_pred CCCCCEEEEeCCC--CCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCc---EE
Confidence 3567899999765 69999999999999999999997533211 3699999999999999999999999998 99
Q ss_pred EEEeee
Q 024708 133 HISYSR 138 (264)
Q Consensus 133 rV~fSK 138 (264)
+|+||+
T Consensus 101 ~V~~a~ 106 (107)
T 3ulh_A 101 NIQLVT 106 (107)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999986
No 65
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.52 E-value=2e-14 Score=112.46 Aligned_cols=78 Identities=21% Similarity=0.258 Sum_probs=66.9
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC----CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccce
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 131 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~----~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~ 131 (264)
..+++.|+|.+++ +.+|+++|+++|+.||.|++|+|...+ ....|||+|.+.++|+.|++.|||..|.++ +
T Consensus 37 ~~~~~~l~V~nlp--~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---~ 111 (118)
T 2khc_A 37 GPEGCNLFIYHLP--QEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTK---R 111 (118)
T ss_dssp CCCSEEEEEECSC--TTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTE---E
T ss_pred CCCCCEEEEeCCC--CCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCE---E
Confidence 4567899999765 689999999999999999999985431 123699999999999999999999999998 9
Q ss_pred EEEEeee
Q 024708 132 LHISYSR 138 (264)
Q Consensus 132 LrV~fSK 138 (264)
|+|+|+|
T Consensus 112 l~V~~ak 118 (118)
T 2khc_A 112 LKVQLKK 118 (118)
T ss_dssp CCEEEC-
T ss_pred EEEEecC
Confidence 9999986
No 66
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=7.2e-14 Score=108.49 Aligned_cols=80 Identities=19% Similarity=0.329 Sum_probs=68.9
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCC---ceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGG---LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g---~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
..+++.|+|.+++ +.+|+++|+++|+.||.|++|+|...+.+ ..|||+|.+.++|+.|++.|||..|.++ .|
T Consensus 12 ~~~~~~l~V~nlp--~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l 86 (114)
T 2do0_A 12 GRLGSTVFVANLD--YKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDR---PM 86 (114)
T ss_dssp CCCCSCEEEESCC--TTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTE---EC
T ss_pred CCCCCEEEEeCCC--CCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCC---EE
Confidence 4567899999765 68999999999999999999997543222 3699999999999999999999999998 99
Q ss_pred EEEeeeCC
Q 024708 133 HISYSRHT 140 (264)
Q Consensus 133 rV~fSK~~ 140 (264)
+|+|++..
T Consensus 87 ~v~~a~~~ 94 (114)
T 2do0_A 87 HVKMDERA 94 (114)
T ss_dssp EEEECSCC
T ss_pred EEEEcccC
Confidence 99998764
No 67
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.52 E-value=6.7e-15 Score=111.72 Aligned_cols=78 Identities=21% Similarity=0.266 Sum_probs=64.5
Q ss_pred CcEEEEEEccCCcccCHHHHHHHHhccC-CeeEEEEEc-CC---CCceEEEEeCCHHHHHHHHHHhc-CCeeCCCccceE
Q 024708 59 SNVLLASIENMQYAVTLDVLHMVFSAFG-PVQKIAMFD-KN---GGLQALIQYPDVQTAVVAKEALE-GHCIYDGGFCKL 132 (264)
Q Consensus 59 s~VL~V~~lN~~~~VT~d~L~~LFs~yG-~V~rIkif~-K~---~g~~AfVqF~d~e~A~~A~~~Ln-G~~I~g~~~c~L 132 (264)
|++|+|.+|+ +.+|+++|+++|+.|| .|.+|+|.. +. ....|||+|.+.++|+.|++.|+ +..|.|+ +|
T Consensus 1 S~~i~v~nLp--~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr---~i 75 (91)
T 2lxi_A 1 SNIVMLRMLP--QAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQ---KV 75 (91)
T ss_dssp CCEEEEETCC--SSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTE---EE
T ss_pred CCEEEEeCCC--CCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCE---EE
Confidence 5789999765 6999999999999999 899998753 21 11369999999999999999885 5678887 99
Q ss_pred EEEeeeCCC
Q 024708 133 HISYSRHTD 141 (264)
Q Consensus 133 rV~fSK~~~ 141 (264)
+|+||+...
T Consensus 76 ~V~~a~~~~ 84 (91)
T 2lxi_A 76 SMHYSDPKP 84 (91)
T ss_dssp EEECCCSCC
T ss_pred EEEEcCCCC
Confidence 999997653
No 68
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=5.1e-14 Score=107.71 Aligned_cols=81 Identities=14% Similarity=0.188 Sum_probs=69.7
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC-C---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccce
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-G---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 131 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~-~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~ 131 (264)
..+++.|+|.+++ +.+|+++|.++|+.||.|.+|+|...+ . ...|||+|.+.++|+.|++.|||..|.++ .
T Consensus 12 ~~~~~~l~V~nlp--~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---~ 86 (103)
T 2cq0_A 12 ADDNATIRVTNLS--EDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHL---I 86 (103)
T ss_dssp CSSSEEEEEESCC--TTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTE---E
T ss_pred CCCCCEEEEeCCC--CCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCc---E
Confidence 4567899999665 589999999999999999999975432 1 13699999999999999999999999998 9
Q ss_pred EEEEeeeCCC
Q 024708 132 LHISYSRHTD 141 (264)
Q Consensus 132 LrV~fSK~~~ 141 (264)
|+|+|++...
T Consensus 87 l~v~~a~~~~ 96 (103)
T 2cq0_A 87 LNVEWAKPST 96 (103)
T ss_dssp CEEEESSCCC
T ss_pred EEEEECCCCC
Confidence 9999998764
No 69
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.52 E-value=4.3e-14 Score=110.33 Aligned_cols=82 Identities=20% Similarity=0.225 Sum_probs=69.8
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC-CC---ceEEEEeCCHHHHHHHHHHhcCCeeCCCccce
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-GG---LQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 131 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~-~g---~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~ 131 (264)
.++++.|+|.+++ +.+|+++|+++|+.||.|.+|+|...+ .+ ..|||+|.+.++|+.|++.|||..|.++ +
T Consensus 22 ~~~~~~l~V~nLp--~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~ 96 (115)
T 2cpz_A 22 GPEGANLFIYHLP--QEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMK---R 96 (115)
T ss_dssp CSTTCCEEEESCC--SSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE---E
T ss_pred CCCCcEEEEeCCC--CCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCE---E
Confidence 3566899999765 699999999999999999999975432 11 3699999999999999999999999998 9
Q ss_pred EEEEeeeCCCC
Q 024708 132 LHISYSRHTDL 142 (264)
Q Consensus 132 LrV~fSK~~~l 142 (264)
|+|+|++...-
T Consensus 97 l~V~~a~~~~~ 107 (115)
T 2cpz_A 97 LKVQLKRSKND 107 (115)
T ss_dssp CEEECCCCSCC
T ss_pred EEEEEcCCCCc
Confidence 99999987643
No 70
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.52 E-value=5.1e-14 Score=111.36 Aligned_cols=80 Identities=19% Similarity=0.292 Sum_probs=69.3
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccce
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 131 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~-----~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~ 131 (264)
.++++|+|.+++ +.+|+++|.++|+.||.|.+|+|.... ++ .|||+|.+.++|+.|++.|||..|.++ .
T Consensus 20 ~~~~~l~V~nlp--~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g-~afV~f~~~~~a~~A~~~l~g~~~~g~---~ 93 (126)
T 3ex7_B 20 VEGWILFVTGVH--EEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKG-YTLVEYETYKEAQAAMEGLNGQDLMGQ---P 93 (126)
T ss_dssp SSSEEEEEESCC--TTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCS-CEEEEESSHHHHHHHHHHHTTCBSSSS---B
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHhcCCeEEEEEEecCCCCccce-EEEEEECCHHHHHHHHHHhCCCeeCCe---E
Confidence 457899999775 689999999999999999999975331 23 699999999999999999999999998 9
Q ss_pred EEEEeeeCCCC
Q 024708 132 LHISYSRHTDL 142 (264)
Q Consensus 132 LrV~fSK~~~l 142 (264)
|+|+|++...-
T Consensus 94 l~v~~a~~~~~ 104 (126)
T 3ex7_B 94 ISVDWCFVRGP 104 (126)
T ss_dssp CEEEESEESSS
T ss_pred EEEEEecCCCC
Confidence 99999976543
No 71
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.52 E-value=1.1e-13 Score=119.98 Aligned_cols=123 Identities=29% Similarity=0.338 Sum_probs=88.3
Q ss_pred eEEEEeecCCCcceeecCC----CCCCCCCCCCCCCCcccccccCCccccCCCCCCCCCCcEEEEEEccCCcccCHHHHH
Q 024708 4 CTLRITYSAHTDLSVKFQS----HRSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDVLH 79 (264)
Q Consensus 4 CtL~I~ySk~~~L~Vk~nn----~~srDYTnp~Lp~~~~al~~~g~~~~~~~G~~~~~~s~VL~V~~lN~~~~VT~d~L~ 79 (264)
.+|+|+|++.......+.. ...+||+.....+... ...... ....+++++|+|.+++ +.+|+++|+
T Consensus 100 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~--~~~~~~~~~l~V~nlp--~~~t~~~l~ 169 (229)
T 2adc_A 100 KPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKK------PGSKNF--QNIFPPSATLHLSNIP--PSVSEEDLK 169 (229)
T ss_dssp SBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCS------TTSGGG--TTCCCSCSEEEEECCC--TTCCHHHHH
T ss_pred eEEEEEEecCccccCccccccccccccccccCcccccCC------cccccc--ccCCCCCCEEEEeCCC--ccCCHHHHH
Confidence 4688888887755443321 2334444433221111 000000 1124568899999765 589999999
Q ss_pred HHHhccC-CeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeC-CCccceEEEEeeeCC
Q 024708 80 MVFSAFG-PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY-DGGFCKLHISYSRHT 140 (264)
Q Consensus 80 ~LFs~yG-~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~-g~~~c~LrV~fSK~~ 140 (264)
++|+.|| .|.+|+++.++++ .|||+|++.++|..|++.|||..|. ++ .|+|+|++.+
T Consensus 170 ~~f~~~G~~i~~v~i~~~~~g-~afV~f~~~~~A~~Ai~~l~g~~~~~g~---~l~v~~a~~~ 228 (229)
T 2adc_A 170 VLFSSNGGVVKGFKFFQKDRK-MALIQMGSVEEAVQALIDLHNHDLGENH---HLRVSFSKST 228 (229)
T ss_dssp HHHHTTSCCEEEEEECSSSTT-CEEEEESSHHHHHHHHHHHTTCBSSSSC---BCEEEECSSC
T ss_pred HHHHHcCCCeeEEEEEECCCc-EEEEEECCHHHHHHHHHHHCCCccCCCC---eEEEEEecCC
Confidence 9999999 9999999765555 6999999999999999999999998 66 9999999864
No 72
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=3.9e-14 Score=110.53 Aligned_cols=80 Identities=16% Similarity=0.271 Sum_probs=69.7
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC---CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~---~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
...++.|+|.+++ +.+|+++|+++|+.||.|.+|++...+ ++ .|||+|++.++|+.|++.|||..|.|+ .|
T Consensus 26 ~~~~~~l~V~nLp--~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg-~afV~f~~~~~A~~Ai~~l~g~~~~g~---~l 99 (109)
T 2err_A 26 KSQPKRLHVSNIP--FRFRDPDLRQMFGQFGKILDVEIIFNERGSKG-FGFVTFENSADADRAREKLHGTVVEGR---KI 99 (109)
T ss_dssp TTCCCEEEEESCC--TTCCHHHHHHHGGGTCCCSCEEECCBTTBCTT-EEEEECCCSHHHHHHHHHHTTCEETTE---EC
T ss_pred CCCCCEEEEECCC--CcCCHHHHHHHHHhcCCEEEEEEEECCCCCce-EEEEEECCHHHHHHHHHHcCCCEECCE---EE
Confidence 3467899998665 689999999999999999999986432 33 699999999999999999999999998 99
Q ss_pred EEEeeeCCC
Q 024708 133 HISYSRHTD 141 (264)
Q Consensus 133 rV~fSK~~~ 141 (264)
+|+|++.+.
T Consensus 100 ~V~~a~~~~ 108 (109)
T 2err_A 100 EVNNATARV 108 (109)
T ss_dssp EEEECCCSC
T ss_pred EEEECCCCc
Confidence 999998764
No 73
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.51 E-value=4.5e-14 Score=109.19 Aligned_cols=80 Identities=21% Similarity=0.293 Sum_probs=68.6
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC-C---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-G---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~-~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
.++++|+|.+++ +.+|+++|+++|+.||.|.+|++.... . ...|||+|.+.++|+.|++.|||..|.|+ .|
T Consensus 24 ~~~~~l~V~nlp--~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~---~l 98 (110)
T 1oo0_B 24 VEGWILFVTSIH--EEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ---TI 98 (110)
T ss_dssp TTBEEEEEESCC--TTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTE---EC
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCc---EE
Confidence 457899999665 699999999999999999999975321 1 13699999999999999999999999988 99
Q ss_pred EEEeeeCCC
Q 024708 133 HISYSRHTD 141 (264)
Q Consensus 133 rV~fSK~~~ 141 (264)
+|+|++...
T Consensus 99 ~V~~a~~~~ 107 (110)
T 1oo0_B 99 QVDWCFVKG 107 (110)
T ss_dssp EEEESEESS
T ss_pred EEEEcccCC
Confidence 999997653
No 74
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=8.2e-14 Score=105.84 Aligned_cols=77 Identities=22% Similarity=0.308 Sum_probs=67.6
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEe
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 136 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~f 136 (264)
.+++.|+|.+ + .+|+++|+++|+.||.|.+|+|.. .++ .|||+|.+.++|+.|++.|||..|.++ .|+|+|
T Consensus 13 ~~~~~l~V~n--~--~~t~~~l~~~F~~~G~i~~v~i~~-~~g-~afV~f~~~~~a~~Ai~~l~g~~~~g~---~l~v~~ 83 (97)
T 1x5p_A 13 RKGNTLYVYG--E--DMTPTLLRGAFSPFGNIIDLSMDP-PRN-CAFVTYEKMESADQAVAELNGTQVESV---QLKVNI 83 (97)
T ss_dssp CCCSEEEEEC--S--SCCHHHHHHHHTTTSCEEEEEEET-TTT-EEEEEESSHHHHHHHHHHTTTEEETTE---EEEEEC
T ss_pred CCCCEEEEcC--C--CCCHHHHHHHHhhCCCEEEEEecC-CCC-EEEEEECCHHHHHHHHHHhCCCeECCe---EEEEEE
Confidence 4568999986 3 799999999999999999999864 334 699999999999999999999999987 999999
Q ss_pred eeCCCC
Q 024708 137 SRHTDL 142 (264)
Q Consensus 137 SK~~~l 142 (264)
++....
T Consensus 84 a~~~~~ 89 (97)
T 1x5p_A 84 ARKQPM 89 (97)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 987643
No 75
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=4.2e-14 Score=110.46 Aligned_cols=80 Identities=14% Similarity=0.188 Sum_probs=69.3
Q ss_pred CCCcEEEEEEccCCcccCHHHHH---HHHhccCCeeEEEEEcCCC-------CceEEEEeCCHHHHHHHHHHhcCCeeCC
Q 024708 57 PESNVLLASIENMQYAVTLDVLH---MVFSAFGPVQKIAMFDKNG-------GLQALIQYPDVQTAVVAKEALEGHCIYD 126 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~---~LFs~yG~V~rIkif~K~~-------g~~AfVqF~d~e~A~~A~~~LnG~~I~g 126 (264)
.+.+.|+|.+++ +.+|+++|. ++|+.||.|.+|+|...+. ...|||+|++.++|+.|++.|||..|.+
T Consensus 13 ~~~~~l~V~nLp--~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 13 VQKNLVFVVGLS--QRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCSSCEEEEEEC--TTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cCCCEEEEECCC--CCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 346789999876 599999999 9999999999999864321 1379999999999999999999999999
Q ss_pred CccceEEEEeeeCCC
Q 024708 127 GGFCKLHISYSRHTD 141 (264)
Q Consensus 127 ~~~c~LrV~fSK~~~ 141 (264)
+ +|+|+|++...
T Consensus 91 r---~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 R---TLKASLGTTKY 102 (111)
T ss_dssp E---EEEEESCCCCS
T ss_pred E---EEEEEeccccc
Confidence 8 99999998765
No 76
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=7.5e-14 Score=107.69 Aligned_cols=80 Identities=16% Similarity=0.217 Sum_probs=69.2
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcC-----CCCceEEEEeCCHHHHHHHHHHhc------CCeeC
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALE------GHCIY 125 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K-----~~g~~AfVqF~d~e~A~~A~~~Ln------G~~I~ 125 (264)
.++++|+|.+++ +.+|+++|+++|+.||.|.+|+|... .++ .|||+|.+.++|+.|++.|| |..|.
T Consensus 13 ~~~~~l~V~nLp--~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g-~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~ 89 (111)
T 1x4h_A 13 TEGKTVFIRNLS--FDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKG-CAFAQFMTQEAAQKCLAAASLEAEGGGLKLD 89 (111)
T ss_dssp CCCCCEEEESCC--TTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCS-EEEEEESSHHHHHHHHHHHCTTTTTCCEESS
T ss_pred CCCCEEEEECCC--CCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcc-EEEEEECCHHHHHHHHHHhccccccCCcEEc
Confidence 457899999665 68999999999999999999997532 223 69999999999999999999 99999
Q ss_pred CCccceEEEEeeeCCCC
Q 024708 126 DGGFCKLHISYSRHTDL 142 (264)
Q Consensus 126 g~~~c~LrV~fSK~~~l 142 (264)
++ .|+|+|++...-
T Consensus 90 g~---~l~v~~a~~~~~ 103 (111)
T 1x4h_A 90 GR---QLKVDLAVTRDE 103 (111)
T ss_dssp SC---EEEEECCCCCCC
T ss_pred CE---EEEEEECCCCcc
Confidence 98 999999987643
No 77
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.51 E-value=1.1e-13 Score=109.30 Aligned_cols=81 Identities=15% Similarity=0.275 Sum_probs=69.7
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCC---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 133 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~Lr 133 (264)
..++.|+|.+++ +.+|+++|.++|+.||.|.+|+|...+. ...|||+|++.++|+.|++.|||..|.++ .|+
T Consensus 5 ~~~~~l~V~nLp--~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~---~l~ 79 (116)
T 2fy1_A 5 DHPGKLFIGGLN--RETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGK---AIK 79 (116)
T ss_dssp CSCCEEEEECCT--TTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSS---BCE
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE---EEE
Confidence 456789998765 5899999999999999999999865321 13699999999999999999999999998 999
Q ss_pred EEeeeCCCC
Q 024708 134 ISYSRHTDL 142 (264)
Q Consensus 134 V~fSK~~~l 142 (264)
|+|++....
T Consensus 80 V~~a~~~~~ 88 (116)
T 2fy1_A 80 VEQAKKPSF 88 (116)
T ss_dssp EEECCCSSC
T ss_pred EEECCCCCC
Confidence 999987653
No 78
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.51 E-value=6.6e-14 Score=106.54 Aligned_cols=77 Identities=16% Similarity=0.308 Sum_probs=66.5
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeE--------EEEEcC-CC---CceEEEEeCCHHHHHHHHHHhcCCee
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK--------IAMFDK-NG---GLQALIQYPDVQTAVVAKEALEGHCI 124 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~r--------Ikif~K-~~---g~~AfVqF~d~e~A~~A~~~LnG~~I 124 (264)
++..+|+|.+++ +.+|+++|+++|+.||.|.+ |++... .. ...|||+|.+.++|+.|++.|||..|
T Consensus 11 ~~~~~l~V~nLp--~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 11 SDNNTIFVQGLG--ENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp CCCSEEEEECCC--SSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 456899999775 69999999999999999999 887543 21 13699999999999999999999999
Q ss_pred CCCccceEEEEeee
Q 024708 125 YDGGFCKLHISYSR 138 (264)
Q Consensus 125 ~g~~~c~LrV~fSK 138 (264)
.|+ .|+|+||+
T Consensus 89 ~g~---~l~V~~A~ 99 (99)
T 2la6_A 89 SGN---PIKVSFAT 99 (99)
T ss_dssp SSS---BCEEEECC
T ss_pred CCc---EEEEEecC
Confidence 998 99999985
No 79
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.51 E-value=4.9e-14 Score=110.28 Aligned_cols=77 Identities=23% Similarity=0.448 Sum_probs=68.7
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEE
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 135 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~ 135 (264)
..+++.|+|.+++ +.+|+++|+++|+.||.|.+|++. + + .|||+|.+.++|+.|++.|||..|.|+ .|+|+
T Consensus 28 ~~~~~~l~V~nLp--~~~t~~~L~~~F~~~G~i~~v~i~--k-g-~afV~f~~~~~A~~Ai~~l~g~~~~g~---~l~V~ 98 (108)
T 2jvo_A 28 ELSNTRLFVRPFP--LDVQESELNEIFGPFGPMKEVKIL--N-G-FAFVEFEEAESAAKAIEEVHGKSFANQ---PLEVV 98 (108)
T ss_dssp CCSCSEEEECSSC--TTCCHHHHHHHHTTTSCCCEEEEE--T-T-EEEEECSSHHHHHHHHHHHTTCEETTE---ECEEE
T ss_pred CCCCCEEEEECCC--CCCCHHHHHHHHHhcCCEEEEEEE--C-C-EEEEEECCHHHHHHHHHHcCCCEECCe---EEEEE
Confidence 3567899998665 699999999999999999999987 2 4 699999999999999999999999887 99999
Q ss_pred eeeCCC
Q 024708 136 YSRHTD 141 (264)
Q Consensus 136 fSK~~~ 141 (264)
|++...
T Consensus 99 ~a~~~~ 104 (108)
T 2jvo_A 99 YSKLPA 104 (108)
T ss_dssp SCSCCC
T ss_pred EecCCC
Confidence 998764
No 80
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.51 E-value=3.9e-14 Score=115.58 Aligned_cols=78 Identities=17% Similarity=0.275 Sum_probs=70.0
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEe
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 136 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~f 136 (264)
.+++.|+|.+++ +.+|+++|+++|+.||.|.+|++...+++ .|||+|.+.++|+.|++.|||..|.|+ .|+|+|
T Consensus 71 ~~~~~l~V~nl~--~~~t~~~l~~~F~~~G~i~~v~i~~~~~g-~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~ 144 (150)
T 2i2y_A 71 PLDCKVYVGNLG--NNGNKTELERAFGYYGPLRSVWVARNPPG-FAFVEFEDPRDAADAVRELDGRTLCGC---RVRVEL 144 (150)
T ss_dssp TTSCEEEEESCC--SCCSCHHHHHHHHHHSCEEEEEECSSSCS-EEEEEESSHHHHHHHHHHHSSSCSSSS---CCEEEE
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHhhCCEEEEEEeeCCCc-EEEEEECCHHHHHHHHHHcCCCEECCe---EEEEEE
Confidence 457899999765 68999999999999999999998766445 699999999999999999999999998 999999
Q ss_pred eeCC
Q 024708 137 SRHT 140 (264)
Q Consensus 137 SK~~ 140 (264)
++..
T Consensus 145 a~~~ 148 (150)
T 2i2y_A 145 SNGE 148 (150)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9865
No 81
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.50 E-value=1.1e-13 Score=109.56 Aligned_cols=80 Identities=19% Similarity=0.199 Sum_probs=69.5
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC----CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~----~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
.+++.|+|.+++ +.+|+++|+++|+.||.|.+|+|...+ ++ .|||+|.+.++|+.|++.|||..|.|+ .|
T Consensus 33 ~~~~~l~V~nlp--~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g-~afV~f~~~~~A~~Ai~~l~g~~~~g~---~l 106 (124)
T 2kt5_A 33 ETGAKLLVSNLD--FGVSDADIQELFAEFGTLKKAAVDYDRSGRSLG-TADVHFERRADALKAMKQYKGVPLDGR---PM 106 (124)
T ss_dssp SSCEEEEEESCC--SSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCS-EEEEEESSHHHHHHHHHHHTTEESSSC---EE
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHhcCCeeEEEEEECCCCCEee-EEEEEECCHHHHHHHHHHcCCCEECCc---EE
Confidence 456899999765 699999999999999999999986432 23 699999999999999999999999998 99
Q ss_pred EEEeeeCCCC
Q 024708 133 HISYSRHTDL 142 (264)
Q Consensus 133 rV~fSK~~~l 142 (264)
+|+||+....
T Consensus 107 ~V~~a~~~~~ 116 (124)
T 2kt5_A 107 DIQLVASQID 116 (124)
T ss_dssp EEEEECCTTC
T ss_pred EEEEeCCCCC
Confidence 9999977554
No 82
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.50 E-value=7.3e-14 Score=112.22 Aligned_cols=80 Identities=15% Similarity=0.252 Sum_probs=68.8
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcC-CC---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-NG---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K-~~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
..++.|+|.+++ +.+|+++|+++|+.||.|++|+|... .. ...|||+|.+.++|++|++.|||..|.++ .|
T Consensus 40 ~~~~~l~V~nLp--~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l 114 (139)
T 1u6f_A 40 DVLRNLMVNYIP--TTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK---RL 114 (139)
T ss_dssp TTTSEEEEESCS--TTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSC---EE
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe---EE
Confidence 456899998665 69999999999999999999997533 21 13699999999999999999999999998 99
Q ss_pred EEEeeeCCC
Q 024708 133 HISYSRHTD 141 (264)
Q Consensus 133 rV~fSK~~~ 141 (264)
+|+|++...
T Consensus 115 ~v~~a~~~~ 123 (139)
T 1u6f_A 115 KVALAASGH 123 (139)
T ss_dssp EEEESSCCC
T ss_pred EEEECCCCC
Confidence 999998754
No 83
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=5.1e-14 Score=105.81 Aligned_cols=77 Identities=26% Similarity=0.311 Sum_probs=65.5
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCC-eeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcC-CeeCCCccceEEE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGP-VQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEG-HCIYDGGFCKLHI 134 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~-V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG-~~I~g~~~c~LrV 134 (264)
..++.|+|.+++ +.+|+++|+++|+.||. |..+.+.. + + .|||+|++.++|+.|++.||| ..|.++ .|+|
T Consensus 6 ~~~~~l~V~nLp--~~~t~~~l~~~F~~~G~vv~~~~~~~-~-g-~afV~f~~~~~A~~A~~~l~g~~~~~g~---~l~v 77 (93)
T 2cqh_A 6 SGMNKLYIGNLS--PAVTADDLRQLFGDRKLPLAGQVLLK-S-G-YAFVDYPDQNWAIRAIETLSGKVELHGK---IMEV 77 (93)
T ss_dssp CCCCCEEEECCC--TTCCHHHHHHHHHHTTCCCSSCEEEE-T-T-EEEECCSCHHHHHHHHHHHTTTCEETTE---ECEE
T ss_pred CCCcEEEEeCCC--CCCCHHHHHHHHHHcCCceEEEEEcC-C-C-EEEEEECCHHHHHHHHHHccCCeeECCE---EEEE
Confidence 456789998765 68999999999999999 55555543 3 4 699999999999999999999 999987 9999
Q ss_pred EeeeCCC
Q 024708 135 SYSRHTD 141 (264)
Q Consensus 135 ~fSK~~~ 141 (264)
+|++...
T Consensus 78 ~~a~~~~ 84 (93)
T 2cqh_A 78 DYSVSKK 84 (93)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9998754
No 84
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=6.2e-14 Score=106.30 Aligned_cols=80 Identities=10% Similarity=0.197 Sum_probs=68.3
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCee-EEEEEcCC-C---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccce
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ-KIAMFDKN-G---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 131 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~-rIkif~K~-~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~ 131 (264)
.+++.|+|.+++ +.+|+++|+++|+.||.|. +|++...+ . ...|||+|.+.++|+.|++.|||..|.++ .
T Consensus 7 ~~~~~l~V~nLp--~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~ 81 (99)
T 2div_A 7 GMAASLWMGDLE--PYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGA---T 81 (99)
T ss_dssp SSSSEEEECSCC--TTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSC---S
T ss_pred CCccEEEEeCCC--CCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCC---C
Confidence 467899998665 6899999999999999999 99875432 1 13699999999999999999999999998 6
Q ss_pred ----EEEEeeeCCC
Q 024708 132 ----LHISYSRHTD 141 (264)
Q Consensus 132 ----LrV~fSK~~~ 141 (264)
|+|+|++...
T Consensus 82 ~~~~l~v~~a~~~~ 95 (99)
T 2div_A 82 PAKRFKLNYATYSG 95 (99)
T ss_dssp SCEECCEEETTCCS
T ss_pred cceeEEEeecCCCC
Confidence 9999987654
No 85
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.49 E-value=2.9e-14 Score=109.66 Aligned_cols=76 Identities=14% Similarity=0.188 Sum_probs=66.2
Q ss_pred CCcEEEEEEccCCc------ccCHHHHHHHHhccCCeeEEEEE-cCC----CCceEEEEeCCHHHHHHHHHHhcCCeeCC
Q 024708 58 ESNVLLASIENMQY------AVTLDVLHMVFSAFGPVQKIAMF-DKN----GGLQALIQYPDVQTAVVAKEALEGHCIYD 126 (264)
Q Consensus 58 ~s~VL~V~~lN~~~------~VT~d~L~~LFs~yG~V~rIkif-~K~----~g~~AfVqF~d~e~A~~A~~~LnG~~I~g 126 (264)
.+++|+|.|++ + .+++++|.++|+.||.|.+|+|. ++. +| .|||+|.+.++|+.|++.|||..|.+
T Consensus 5 ~~~~vfV~nLp--~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG-~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 5 SDQYIVVNGAP--VIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKG-FLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp GGGEEEEESCC--CCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECS-EEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred cCcEEEEeCCC--cCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccce-EEEEEECCHHHHHHHHHHhCCcccCC
Confidence 46799999664 6 89999999999999999999974 332 34 69999999999999999999999999
Q ss_pred -CccceEEEEeeeC
Q 024708 127 -GGFCKLHISYSRH 139 (264)
Q Consensus 127 -~~~c~LrV~fSK~ 139 (264)
+ .|+|++++.
T Consensus 82 ~r---~l~V~~a~~ 92 (100)
T 3ns6_A 82 KH---RLFLYTMKD 92 (100)
T ss_dssp SC---BCEEEESHH
T ss_pred Ce---EEEEEECch
Confidence 7 999999865
No 86
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.49 E-value=9.2e-14 Score=108.52 Aligned_cols=80 Identities=19% Similarity=0.289 Sum_probs=68.7
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcC-CC---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-NG---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K-~~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
++++.|+|.+++ +.+|+++|+++|+.||.|.+|++... .. ...|||+|.+.++|+.|++.|||..|.|+ .|
T Consensus 24 ~~~~~l~V~nLp--~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~---~l 98 (108)
T 2jrs_A 24 AGPMRLYVGSLH--FNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR---PM 98 (108)
T ss_dssp SSCEEEEEECCC--SSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSS---CC
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE---EE
Confidence 456899999775 58999999999999999999997533 21 13699999999999999999999999998 99
Q ss_pred EEEeeeCCC
Q 024708 133 HISYSRHTD 141 (264)
Q Consensus 133 rV~fSK~~~ 141 (264)
+|+|++.+.
T Consensus 99 ~V~~a~~k~ 107 (108)
T 2jrs_A 99 KVGHVTERT 107 (108)
T ss_dssp EEECSCSSC
T ss_pred EEEEcccCC
Confidence 999998653
No 87
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=7e-14 Score=106.22 Aligned_cols=78 Identities=18% Similarity=0.305 Sum_probs=66.5
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEE-EcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAM-FDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 135 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIki-f~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~ 135 (264)
..++.|+|.+++ +.+|+++|.++|+.||.|. +++ ..+.++ .|||+|.+.++|+.|++.|||..|.|+ .|+|+
T Consensus 17 ~~~~~l~V~nL~--~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g-~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~V~ 89 (97)
T 2e5j_A 17 PLAADVYVGNLP--RDARVSDLKRALRELGSVP-LRLTWQGPRR-RAFLHYPDSAAAQQAVSCLQGLRLGTD---TLRVA 89 (97)
T ss_dssp CCCCEEEEECCC--TTCCHHHHHHHHHHTTCCC-SEEEEETTTT-EEEEECSSHHHHHHHHHHHTTCCSSSS---CCEEE
T ss_pred CCCCEEEEeCCC--CcCcHHHHHHHHHhcCCEE-EEEEcCCCCc-EEEEEECCHHHHHHHHHHhCCCEECCc---EEEEE
Confidence 456799998765 6999999999999999996 454 344445 699999999999999999999999998 99999
Q ss_pred eeeCCC
Q 024708 136 YSRHTD 141 (264)
Q Consensus 136 fSK~~~ 141 (264)
|++...
T Consensus 90 ~a~~~~ 95 (97)
T 2e5j_A 90 LARQQR 95 (97)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 998753
No 88
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.49 E-value=1.1e-13 Score=106.05 Aligned_cols=81 Identities=14% Similarity=0.220 Sum_probs=68.0
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC----CCceEEEEeCCHHHHHHHHHHhcCCee---CCCc
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCI---YDGG 128 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~----~g~~AfVqF~d~e~A~~A~~~LnG~~I---~g~~ 128 (264)
..+++.|+|.+++ +.+|+++|+++|+.||.|.+|+|...+ ....|||+|.+.++|+.|++.|||..+ .++
T Consensus 10 ~~~~~~l~V~nlp--~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~- 86 (106)
T 2dgp_A 10 DHDAIKLFIGQIP--RNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNR- 86 (106)
T ss_dssp CTTCEEEEEESCC--TTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSS-
T ss_pred CCCCCEEEEeCCC--CCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCc-
Confidence 3567889998665 699999999999999999999975421 123699999999999999999999998 666
Q ss_pred cceEEEEeeeCCC
Q 024708 129 FCKLHISYSRHTD 141 (264)
Q Consensus 129 ~c~LrV~fSK~~~ 141 (264)
.|+|+|++...
T Consensus 87 --~l~v~~a~~~~ 97 (106)
T 2dgp_A 87 --PIQVKPADSES 97 (106)
T ss_dssp --CCEEEECCCCS
T ss_pred --eEEEEECCccc
Confidence 89999998754
No 89
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.48 E-value=1.5e-13 Score=107.02 Aligned_cols=79 Identities=20% Similarity=0.316 Sum_probs=68.5
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC-CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 135 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~-~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~ 135 (264)
.++++|+|.|++ +.+|+++|.++|+.||.|.+|++.... ....|||+|.+.++|+.|++.|||..|.|+ .|+|+
T Consensus 6 ~~~~~l~V~nlp--~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---~l~v~ 80 (115)
T 3lqv_A 6 EVNRILYIRNLP--YKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNR---YLVVL 80 (115)
T ss_dssp TCCSEEEEESCC--TTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSC---BCEEE
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCe---EEEEE
Confidence 457899999765 699999999999999999999986432 123699999999999999999999999998 99999
Q ss_pred eeeCC
Q 024708 136 YSRHT 140 (264)
Q Consensus 136 fSK~~ 140 (264)
|++..
T Consensus 81 ~a~~~ 85 (115)
T 3lqv_A 81 YYNAN 85 (115)
T ss_dssp ECCHH
T ss_pred EecCC
Confidence 99754
No 90
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.48 E-value=5.5e-14 Score=109.11 Aligned_cols=76 Identities=21% Similarity=0.292 Sum_probs=66.8
Q ss_pred CCCcEEEEEEccCCcc-cCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEE
Q 024708 57 PESNVLLASIENMQYA-VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 135 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~-VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~ 135 (264)
..++.|+|.+++ +. +|+++|+++|+.||.|.+|++. + + .|||+|++.++|+.|++.|||..|.++ .|+|+
T Consensus 25 ~~~~~l~V~nl~--~~~~t~~~l~~~F~~~G~v~~v~i~--~-g-~afV~f~~~~~A~~A~~~l~g~~~~g~---~l~V~ 95 (110)
T 1wf1_A 25 SINSRVFIGNLN--TALVKKSDVETIFSKYGRVAGCSVH--K-G-YAFVQYSNERHARAAVLGENGRVLAGQ---TLDIN 95 (110)
T ss_dssp TCSSEEEECSCC--CSSCCHHHHHHHHGGGSCCSEEEEE--T-T-EEEEECSSSHHHHHHHHHHTTCEETTE---ECCEE
T ss_pred CCCcEEEEeCCC--cccCCHHHHHHHHHhCCCeEEEEEe--C-C-EEEEEECCHHHHHHHHHHcCCCEECCe---EEEEE
Confidence 345789998665 57 9999999999999999999992 2 4 699999999999999999999999998 99999
Q ss_pred eeeCCC
Q 024708 136 YSRHTD 141 (264)
Q Consensus 136 fSK~~~ 141 (264)
|++...
T Consensus 96 ~a~~~~ 101 (110)
T 1wf1_A 96 MAGEPK 101 (110)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 997644
No 91
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.6e-13 Score=104.40 Aligned_cols=76 Identities=16% Similarity=0.348 Sum_probs=67.6
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhcc--CCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAF--GPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 134 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~y--G~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV 134 (264)
.++++|+|.+++ +.+|+++|+++|+.| |.|.+|++.+ + .|||+|.+.++|+.|++.|||..|.++ .|+|
T Consensus 13 ~~~~~l~V~nLp--~~~t~~~l~~~F~~~g~g~v~~~~~~~---g-~afV~f~~~~~A~~A~~~l~g~~~~g~---~l~v 83 (99)
T 2cpd_A 13 SSVKILYVRNLM--LSTSEEMIEKEFNNIKPGAVERVKKIR---D-YAFVHFSNREDAVEAMKALNGKVLDGS---PIEV 83 (99)
T ss_dssp SCCCEEEEESCC--TTCCHHHHHHHHHTTSTTCEEEEEECS---S-EEEEEESSHHHHHHHHHHHSSEEETTE---EEEE
T ss_pred CCcCEEEEeCCC--CCCCHHHHHHHHHhcCCcceEEEEEeC---C-eEEEEeCCHHHHHHHHHHhCCCEeCCc---EEEE
Confidence 467899999665 689999999999999 9999998752 3 699999999999999999999999987 9999
Q ss_pred EeeeCCC
Q 024708 135 SYSRHTD 141 (264)
Q Consensus 135 ~fSK~~~ 141 (264)
+|++...
T Consensus 84 ~~a~~~~ 90 (99)
T 2cpd_A 84 TLAKPVD 90 (99)
T ss_dssp ECCCCCC
T ss_pred EECCCCC
Confidence 9998754
No 92
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.48 E-value=1.1e-13 Score=111.87 Aligned_cols=81 Identities=20% Similarity=0.235 Sum_probs=69.6
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC----CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccce
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 131 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~----~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~ 131 (264)
..++++|+|.+++ +.+|+++|.++|+.||.|.+|+|...+ ....|||+|.+.++|+.|++.|||..|.++ .
T Consensus 43 ~~~~~~l~V~nLp--~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~---~ 117 (129)
T 2kxn_B 43 PDPNCCLGVFGLS--LYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR---R 117 (129)
T ss_dssp CCCSSCBCEETCT--TSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSS---C
T ss_pred CCCCCEEEEeCCC--CCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCE---E
Confidence 4567899998665 689999999999999999999986421 123699999999999999999999999998 9
Q ss_pred EEEEeeeCCC
Q 024708 132 LHISYSRHTD 141 (264)
Q Consensus 132 LrV~fSK~~~ 141 (264)
|+|+|++...
T Consensus 118 l~V~~a~~~~ 127 (129)
T 2kxn_B 118 IRVDFSITKR 127 (129)
T ss_dssp CEESCCSSSS
T ss_pred EEEEEecCCC
Confidence 9999998754
No 93
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=3.9e-14 Score=108.10 Aligned_cols=80 Identities=20% Similarity=0.256 Sum_probs=68.5
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC-C---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEE
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-G---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 133 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~-~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~Lr 133 (264)
.++.|+|.+++ +.+|+++|+++|+.||.|.+|++.... . ...|||+|.+.++|+.|++.|||..|.|+ .|+
T Consensus 7 ~~~~l~V~nlp--~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~ 81 (104)
T 1p1t_A 7 SLRSVFVGNIP--YEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGR---ALR 81 (104)
T ss_dssp HHSCEEEESCC--TTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSS---CBE
T ss_pred CccEEEEeCCC--CcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCc---EEE
Confidence 35789999765 699999999999999999999975332 1 13699999999999999999999999998 999
Q ss_pred EEeeeCCCC
Q 024708 134 ISYSRHTDL 142 (264)
Q Consensus 134 V~fSK~~~l 142 (264)
|+|++...-
T Consensus 82 v~~a~~~~~ 90 (104)
T 1p1t_A 82 VDNAASEKN 90 (104)
T ss_dssp EEETTCTTH
T ss_pred EEeCCCccc
Confidence 999987653
No 94
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.48 E-value=8.3e-14 Score=107.58 Aligned_cols=76 Identities=16% Similarity=0.258 Sum_probs=64.0
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCC--eeEEEEEc-C----CCCceEEEEeCCHHHHHHHHHHhcCC----eeCC
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGP--VQKIAMFD-K----NGGLQALIQYPDVQTAVVAKEALEGH----CIYD 126 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~--V~rIkif~-K----~~g~~AfVqF~d~e~A~~A~~~LnG~----~I~g 126 (264)
.-.+|+|.||+ +.+|+++|+++|+.||. |.+|++.+ + ++| .|||+|.+.++|+.|++.|||. .|.|
T Consensus 8 ~m~tlfV~nL~--~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG-~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 8 HMDTIILRNIA--PHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRG-FAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp CCCEEEEESCC--TTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSS-EEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred ccCEEEEeCCC--CcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCce-EeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 34689999776 59999999999999995 67888643 2 233 6999999999999999999997 4888
Q ss_pred CccceEEEEeeeC
Q 024708 127 GGFCKLHISYSRH 139 (264)
Q Consensus 127 ~~~c~LrV~fSK~ 139 (264)
+ +|+|+|||.
T Consensus 85 r---~i~V~~Aks 94 (95)
T 2lkz_A 85 K---TIGVDFAKS 94 (95)
T ss_dssp E---EEEEEECCC
T ss_pred E---EEEEEEccC
Confidence 8 999999985
No 95
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=9.6e-14 Score=107.95 Aligned_cols=81 Identities=22% Similarity=0.240 Sum_probs=68.3
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCe----eEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPV----QKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V----~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
.++++|+|.+++ +.+|+++|.++|+.||.| ..+++...+....|||+|.+.++|+.|++.|||..|.++ .|
T Consensus 23 ~~~~~l~V~nLp--~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~---~l 97 (115)
T 2cpx_A 23 EPNKVLYLKNLS--PRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGK---IL 97 (115)
T ss_dssp SCCSEEEEECCC--TTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSC---BC
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCc---EE
Confidence 467899999765 699999999999999999 566655433223699999999999999999999999998 99
Q ss_pred EEEeeeCCCC
Q 024708 133 HISYSRHTDL 142 (264)
Q Consensus 133 rV~fSK~~~l 142 (264)
+|+|++...-
T Consensus 98 ~v~~a~~~~~ 107 (115)
T 2cpx_A 98 VIEFGKNKKQ 107 (115)
T ss_dssp EEEECCCCSC
T ss_pred EEEEccCCCC
Confidence 9999987653
No 96
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.47 E-value=1.6e-13 Score=121.33 Aligned_cols=77 Identities=19% Similarity=0.366 Sum_probs=69.1
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeC-CCccceEEEE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY-DGGFCKLHIS 135 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~-g~~~c~LrV~ 135 (264)
.++++|+|.+++ +.+|+++|+++|+.||.|.+|++...+++ .|||+|.+.++|..|++.|||..|. ++ .|+|+
T Consensus 205 ~~~~~l~v~nl~--~~~~~~~l~~~F~~~G~i~~v~~~~~~~g-~afV~f~~~~~A~~A~~~l~g~~~~~g~---~l~v~ 278 (282)
T 3pgw_A 205 PPNHILFLTNLP--EETNELMLSMLFNQFPGFKEVRLVPGRHD-IAFVEFDNEVQAGAARDALQGFKITQNN---AMKIS 278 (282)
T ss_pred CCCCEEEEeCCC--CcCCHHHHHHHHHhcCCeEEEEEecCCCc-EEEEEeCCHHHHHHHHHHcCCcEeCCCC---EEEEE
Confidence 467899999775 58999999999999999999998865544 6999999999999999999999999 76 99999
Q ss_pred eeeC
Q 024708 136 YSRH 139 (264)
Q Consensus 136 fSK~ 139 (264)
|||.
T Consensus 279 ~akk 282 (282)
T 3pgw_A 279 FAKK 282 (282)
T ss_pred EecC
Confidence 9973
No 97
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.2e-13 Score=105.95 Aligned_cols=77 Identities=10% Similarity=0.243 Sum_probs=66.2
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC------CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccc
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 130 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~------~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c 130 (264)
.+.+.|+|.+++ +.+|+++|.++|+.|| |.+|+|.... ++ .|||+|.+.++|+.|+ .|||..|.++
T Consensus 13 ~~~~~l~V~nlp--~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g-~afV~f~~~~~a~~A~-~l~g~~~~g~--- 84 (104)
T 1wi8_A 13 SPPYTAFLGNLP--YDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKG-FGYAEFEDLDSLLSAL-SLNEESLGNK--- 84 (104)
T ss_dssp SSCEEEEEESCC--SSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCS-CEEEEESSHHHHHHHH-GGGTCEETTE---
T ss_pred CCCCEEEEeCCC--CcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCe-EEEEEECCHHHHHHHH-hcCCCEeCCc---
Confidence 456789998665 6899999999999999 9999975321 23 6999999999999999 9999999998
Q ss_pred eEEEEeeeCCC
Q 024708 131 KLHISYSRHTD 141 (264)
Q Consensus 131 ~LrV~fSK~~~ 141 (264)
.|+|+|++...
T Consensus 85 ~l~V~~a~~~~ 95 (104)
T 1wi8_A 85 RIRVDVADQAQ 95 (104)
T ss_dssp ECEEEECCCCC
T ss_pred EEEEEEccCCC
Confidence 99999998754
No 98
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1e-13 Score=108.00 Aligned_cols=76 Identities=17% Similarity=0.290 Sum_probs=66.1
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcC-----CCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K-----~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
.++.|+|.+++ +.+|+++|.++|+.||.|.+|+|... .++ .|||+|.+.++|+.|+ .|||..|.++ .|
T Consensus 24 ~~~~l~V~nlp--~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g-~afV~f~~~~~a~~A~-~l~g~~~~g~---~l 96 (114)
T 2cq4_A 24 DARTVFCMQLA--ARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKG-IAYVEFCEIQSVPLAI-GLTGQRLLGV---PI 96 (114)
T ss_dssp HHTEEEEESCC--TTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCC-CEEEEESCGGGHHHHH-HHTTEEETTE---EE
T ss_pred CCCEEEEeCCC--CCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCc-EEEEEeCcHHHHHHHH-HcCCCEeCCe---EE
Confidence 35789998665 69999999999999999999998632 233 6999999999999999 9999999998 99
Q ss_pred EEEeeeCC
Q 024708 133 HISYSRHT 140 (264)
Q Consensus 133 rV~fSK~~ 140 (264)
+|+|++..
T Consensus 97 ~V~~a~~~ 104 (114)
T 2cq4_A 97 IVQASQAE 104 (114)
T ss_dssp EEEEHHHH
T ss_pred EEEecCCC
Confidence 99998764
No 99
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.7e-13 Score=103.47 Aligned_cols=78 Identities=22% Similarity=0.299 Sum_probs=65.4
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEe
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 136 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~f 136 (264)
...+.|+|.+++ +.+|+++|.++|+.||.|.+| +.++..+..|||+|.+.++|+.|++ |||..|.|+ .|+|++
T Consensus 6 ~~~~~l~V~nl~--~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~---~l~V~~ 78 (94)
T 2e5g_A 6 SGLRSVFVSGFP--RGVDSAQLSEYFLAFGPVASV-VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGH---RLRVRP 78 (94)
T ss_dssp TTCCEEEEECCC--TTCCHHHHHHHGGGTSCEEEE-EECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTE---ECCCBC
T ss_pred CCCCEEEEECCC--CCCCHHHHHHHHHhcCCeEEE-EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCE---EEEEEE
Confidence 346789998665 699999999999999999998 5554333279999999999999999 999999998 889987
Q ss_pred eeCCC
Q 024708 137 SRHTD 141 (264)
Q Consensus 137 SK~~~ 141 (264)
++...
T Consensus 79 a~~~~ 83 (94)
T 2e5g_A 79 REQKE 83 (94)
T ss_dssp SCCSC
T ss_pred CCcCC
Confidence 75443
No 100
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.47 E-value=2.4e-13 Score=111.60 Aligned_cols=80 Identities=18% Similarity=0.150 Sum_probs=68.9
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC-C---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-G---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~-~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
.++++|+|.+++ +.+|+++|.++|+.||.|++|+|...+ . ...|||+|.+.++|+.|++.|||..|.++ .|
T Consensus 37 ~~~~~l~V~nlp--~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~---~l 111 (156)
T 1h2v_Z 37 KKSCTLYVGNLS--FYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDR---II 111 (156)
T ss_dssp TTCCEEEEESCC--TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTE---EC
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCe---EE
Confidence 467899999765 699999999999999999999975432 1 13699999999999999999999999988 99
Q ss_pred EEEeeeCCC
Q 024708 133 HISYSRHTD 141 (264)
Q Consensus 133 rV~fSK~~~ 141 (264)
+|+|++...
T Consensus 112 ~V~~a~~~~ 120 (156)
T 1h2v_Z 112 RTDWDAGFK 120 (156)
T ss_dssp EEEEESCCC
T ss_pred EEEECCCCC
Confidence 999998643
No 101
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.47 E-value=1.1e-13 Score=102.65 Aligned_cols=76 Identities=16% Similarity=0.266 Sum_probs=65.5
Q ss_pred CcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC----CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEE
Q 024708 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 134 (264)
Q Consensus 59 s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~----~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV 134 (264)
++.|+|.+++ +.+|+++|+++|+.||.|.+|++.... ....|||+|.+.++|+.|+ .|||..|.++ .|+|
T Consensus 6 ~~~l~V~nlp--~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~---~l~V 79 (89)
T 3ucg_A 6 ARSIYVGNVD--YGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGR---QIKV 79 (89)
T ss_dssp HTEEEEESCC--TTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTE---ECEE
T ss_pred CCEEEEeCCC--CCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCc---EEEE
Confidence 4689998665 689999999999999999999975331 1236999999999999999 9999999998 9999
Q ss_pred EeeeCC
Q 024708 135 SYSRHT 140 (264)
Q Consensus 135 ~fSK~~ 140 (264)
++++..
T Consensus 80 ~~a~~~ 85 (89)
T 3ucg_A 80 IPKRTN 85 (89)
T ss_dssp EETTTT
T ss_pred EEccCC
Confidence 998764
No 102
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.47 E-value=2.5e-13 Score=106.66 Aligned_cols=83 Identities=13% Similarity=0.124 Sum_probs=67.6
Q ss_pred CCCCCcEEEEEEccCCc---ccCHHHHHHHHhccCCeeEEEEEcC-----CCCceEEEEeCCHHHHHHHHHHhcCCeeCC
Q 024708 55 LEPESNVLLASIENMQY---AVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYD 126 (264)
Q Consensus 55 ~~~~s~VL~V~~lN~~~---~VT~d~L~~LFs~yG~V~rIkif~K-----~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g 126 (264)
...+++||+|.|+.... .-++++|+++|++||.|.+|+|.+. +....|||+|++.++|+.|++.|||..+.|
T Consensus 4 ~~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G 83 (105)
T 2pe8_A 4 GKCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG 83 (105)
T ss_dssp GGSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 34678999999764322 2378999999999999999998642 112469999999999999999999999999
Q ss_pred CccceEEEEeeeCC
Q 024708 127 GGFCKLHISYSRHT 140 (264)
Q Consensus 127 ~~~c~LrV~fSK~~ 140 (264)
+ .|+|+|++..
T Consensus 84 r---~i~v~~a~~~ 94 (105)
T 2pe8_A 84 R---VVKACFYNLD 94 (105)
T ss_dssp E---ECEEEECCHH
T ss_pred c---EEEEEEcCHH
Confidence 8 9999998653
No 103
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.4e-13 Score=106.08 Aligned_cols=79 Identities=13% Similarity=0.182 Sum_probs=67.4
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCC-eeEEEEEc------CCCCceEEEEeCCHHHHHHHHHHhc--CCeeCCC
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGP-VQKIAMFD------KNGGLQALIQYPDVQTAVVAKEALE--GHCIYDG 127 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~-V~rIkif~------K~~g~~AfVqF~d~e~A~~A~~~Ln--G~~I~g~ 127 (264)
.+++.|+|.+++ +.+|+++|.++|+.||. |.+|++.. +.++ .|||+|.+.++|+.|++.|| +..|.++
T Consensus 6 ~~~~~l~V~nLp--~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g-~afV~f~~~~~A~~A~~~l~~g~~~~~g~ 82 (109)
T 2dis_A 6 SGNCRLFIGGIP--KMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRG-FAFVEYESHRAAAMARRKLMPGRIQLWGH 82 (109)
T ss_dssp CCSEEEEEECCC--TTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCC-EEEEEESSHHHHHHHHTTTTTCCSCBTTB
T ss_pred cCCCEEEEeCCC--CcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCc-EEEEEecCHHHHHHHHHHhhCCCceecCC
Confidence 457889999765 69999999999999998 99999862 2234 69999999999999999996 5888888
Q ss_pred ccceEEEEeeeCCC
Q 024708 128 GFCKLHISYSRHTD 141 (264)
Q Consensus 128 ~~c~LrV~fSK~~~ 141 (264)
.|+|+|++...
T Consensus 83 ---~l~V~~a~~~~ 93 (109)
T 2dis_A 83 ---QIAVDWAEPEI 93 (109)
T ss_dssp ---CCEEEESCSSC
T ss_pred ---eEEEEEcCCCC
Confidence 99999998754
No 104
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.46 E-value=1.9e-13 Score=109.03 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=65.8
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcC-C---CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccce
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-N---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 131 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K-~---~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~ 131 (264)
..+++.|+|.+++ +.+|+++|+++|+.||.|.+|++... . ....|||+|++.++|++|++.|||..|.++ .
T Consensus 60 ~~~~~~l~v~nlp--~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~ 134 (140)
T 2ku7_A 60 ATTKRVLYVGGLA--EEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR---T 134 (140)
T ss_dssp CSSCCEEEEECCC--TTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTE---E
T ss_pred CCCCcEEEEEeCC--CCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCE---E
Confidence 4567899999775 58999999999999999999997543 1 123699999999999999999999999998 9
Q ss_pred EEEEee
Q 024708 132 LHISYS 137 (264)
Q Consensus 132 LrV~fS 137 (264)
|+|+||
T Consensus 135 l~v~~A 140 (140)
T 2ku7_A 135 IRVNLA 140 (140)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 999986
No 105
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.46 E-value=1.4e-13 Score=109.45 Aligned_cols=77 Identities=9% Similarity=0.038 Sum_probs=66.3
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccC-CeeEEEEEc-CCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEE
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFG-PVQKIAMFD-KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 135 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG-~V~rIkif~-K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~ 135 (264)
....|+|.||+ +.+|+++|.++|+.|| .|..|++.. +.+| .|||+|++.++|+.|++.|||..|.|+ .|+|+
T Consensus 27 ~~~~l~VgnLp--~~~te~dL~~~F~~~G~~v~~v~i~~~~~rG-faFV~F~~~e~A~~Ai~~lng~~l~Gr---~i~V~ 100 (111)
T 2jvr_A 27 KRYRITMKNLP--EGCSWQDLKDLARENSLETTFSSVNTRDFDG-TGALEFPSEEILVEALERLNNIEFRGS---VITVE 100 (111)
T ss_dssp CCEEEEEECSS--CCCCHHHHHHHHHHHTCCCSEEECSSCSSSC-CEEEEESSHHHHHHHHHHTTTEEETTE---EEEEE
T ss_pred CCCEEEEECCC--CCCCHHHHHHHHHHhCCeeEEEEEEcCCCCC-EEEEEECCHHHHHHHHHHcCCCEECCe---EEEEE
Confidence 35678888664 7999999999999999 999999853 3445 599999999999999999999999998 99999
Q ss_pred eeeCC
Q 024708 136 YSRHT 140 (264)
Q Consensus 136 fSK~~ 140 (264)
+++..
T Consensus 101 ~a~~~ 105 (111)
T 2jvr_A 101 RDDNP 105 (111)
T ss_dssp ESCC-
T ss_pred ECCCC
Confidence 98653
No 106
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.9e-13 Score=106.10 Aligned_cols=81 Identities=27% Similarity=0.332 Sum_probs=68.8
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCee--------EEEEEcC-CC---CceEEEEeCCHHHHHHHHHHhcCCe
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ--------KIAMFDK-NG---GLQALIQYPDVQTAVVAKEALEGHC 123 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~--------rIkif~K-~~---g~~AfVqF~d~e~A~~A~~~LnG~~ 123 (264)
..+++.|+|.+++ +.+|+++|+++|+.||.|. +|+|+.. .. ...|||+|.+.++|+.|++.|||..
T Consensus 12 ~~~~~~l~V~nLp--~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 12 DSDNSAIYVQGLN--DSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCEEEEECCC--TTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred CCCCCEEEEcCCC--CCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3567899999775 6999999999999999999 6887543 21 1369999999999999999999999
Q ss_pred eCCCccceEEEEeeeCCC
Q 024708 124 IYDGGFCKLHISYSRHTD 141 (264)
Q Consensus 124 I~g~~~c~LrV~fSK~~~ 141 (264)
|.++ .|+|++++...
T Consensus 90 ~~g~---~l~V~~a~~~~ 104 (113)
T 2cpe_A 90 FQGS---KLKVSLARKKP 104 (113)
T ss_dssp ETTE---ECEEECSSCCC
T ss_pred cCCC---EEEEEECCCCC
Confidence 9998 99999998754
No 107
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.45 E-value=2.8e-13 Score=117.51 Aligned_cols=84 Identities=29% Similarity=0.430 Sum_probs=73.5
Q ss_pred CCCCcEEEEEEccCCc-ccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEE
Q 024708 56 EPESNVLLASIENMQY-AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 134 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~-~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV 134 (264)
.+++++|+|.+++ + .+|+++|+++|+.||.|.+|++...+++ .|||+|.+.++|+.|++.|||..|.++ .|+|
T Consensus 31 ~~~~~~l~V~nLp--~~~~te~~L~~~F~~~G~i~~v~i~~~~~g-~afV~F~~~~~A~~Ai~~l~g~~~~g~---~l~v 104 (229)
T 2adc_A 31 GAGNSVLLVSNLN--PERVTPQSLFILFGVYGDVQRVKILFNKKE-NALVQMADGNQAQLAMSHLNGHKLHGK---PIRI 104 (229)
T ss_dssp CCCCSEEEEESCC--TTTCCHHHHHHHHHHHTCEEEEEECCTTSC-CEEEEESCHHHHHHHHHHHTTCBCSSS---BCEE
T ss_pred CCCCCEEEEeCCC--cccCCHHHHHHHHHhCCCeEEEEEEECCCC-EEEEEECCHHHHHHHHHHhCCCeECCe---EEEE
Confidence 3578899999665 6 8999999999999999999998765545 599999999999999999999999998 9999
Q ss_pred EeeeCCCCcee
Q 024708 135 SYSRHTDLSIK 145 (264)
Q Consensus 135 ~fSK~~~l~vk 145 (264)
+|++.......
T Consensus 105 ~~a~~~~~~~~ 115 (229)
T 2adc_A 105 TLSKHQNVQLP 115 (229)
T ss_dssp ECCSCCCCCCC
T ss_pred EEecCccccCc
Confidence 99988765543
No 108
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2.7e-13 Score=103.59 Aligned_cols=81 Identities=10% Similarity=0.020 Sum_probs=68.7
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhc-cCCeeEEEEEcCCC---CceEEEEeCCHHHHHHHHHHhcCCe-eCCCccce
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSA-FGPVQKIAMFDKNG---GLQALIQYPDVQTAVVAKEALEGHC-IYDGGFCK 131 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~-yG~V~rIkif~K~~---g~~AfVqF~d~e~A~~A~~~LnG~~-I~g~~~c~ 131 (264)
.++..|+|.+++ +.+|+++|.++|+. ||.|.+|+|..... ...|||+|.+.++|+.|++.|||.. |.++ .
T Consensus 7 ~~~~~l~V~nLp--~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~---~ 81 (104)
T 2dhg_A 7 GPEYSLFVGDLT--PDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSK---P 81 (104)
T ss_dssp SCCCCEEEECCC--TTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSS---C
T ss_pred CCCcEEEEeCCC--CCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCE---e
Confidence 456789999765 58999999999999 99999999754321 1369999999999999999999999 9988 8
Q ss_pred EEEEeeeCCCC
Q 024708 132 LHISYSRHTDL 142 (264)
Q Consensus 132 LrV~fSK~~~l 142 (264)
|+|+|++...-
T Consensus 82 l~v~~a~~~~~ 92 (104)
T 2dhg_A 82 VRLSVAIPKAS 92 (104)
T ss_dssp CCCCBCCCCCS
T ss_pred EEEEEccCCCc
Confidence 99999876543
No 109
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.45 E-value=2.1e-13 Score=107.58 Aligned_cols=80 Identities=15% Similarity=0.205 Sum_probs=68.0
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcC-C---CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEE
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-N---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 133 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K-~---~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~Lr 133 (264)
.++.|+|.+++ +.+|+++|.++|+.||.|.+|++... . ....|||+|.+.++|+.|+ .|||..|.|+ .|+
T Consensus 35 ~~~~l~V~nlp--~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~---~l~ 108 (124)
T 2jwn_A 35 DKRSVYVGNVD--YGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGR---TIK 108 (124)
T ss_dssp HHTEEEEEEEC--TTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTE---ECE
T ss_pred CCCEEEEeCCC--CCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCe---EEE
Confidence 45799999886 58999999999999999999997532 1 1236999999999999999 8999999998 999
Q ss_pred EEeeeCCCCc
Q 024708 134 ISYSRHTDLS 143 (264)
Q Consensus 134 V~fSK~~~l~ 143 (264)
|+|++...-.
T Consensus 109 V~~a~~~~~~ 118 (124)
T 2jwn_A 109 VLPKRTNMPG 118 (124)
T ss_dssp EEESSCCCSS
T ss_pred EEECCCCCCC
Confidence 9999875543
No 110
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=7.2e-13 Score=103.48 Aligned_cols=79 Identities=14% Similarity=0.138 Sum_probs=67.1
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC----CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccce
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 131 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~----~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~ 131 (264)
..+.+.|+|.+++ +.+|+++|.++|+.||.|.+|+|...+ ....|||+|.+.++|+.|++.||+ .|.++ .
T Consensus 14 ~~~~~~l~V~nlp--~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~---~ 87 (116)
T 2cqd_A 14 DTTFTKIFVGGLP--YHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGR---K 87 (116)
T ss_dssp SCSSSEEEEECCC--SSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTE---E
T ss_pred CCCCCEEEEeCCC--CCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCE---E
Confidence 4567899999765 699999999999999999999985432 113699999999999999999998 78887 9
Q ss_pred EEEEeeeCC
Q 024708 132 LHISYSRHT 140 (264)
Q Consensus 132 LrV~fSK~~ 140 (264)
|+|+|++..
T Consensus 88 l~V~~a~~~ 96 (116)
T 2cqd_A 88 ANVNLAYLG 96 (116)
T ss_dssp CEEEESTTT
T ss_pred EEEEEcccC
Confidence 999998754
No 111
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.44 E-value=1.2e-13 Score=103.80 Aligned_cols=78 Identities=15% Similarity=0.206 Sum_probs=64.3
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEc-CCC---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD-KNG---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~-K~~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
+++++|+|.+++ +.+|+++|+++|+.||.|.++++.. +.. ...|||+|.+.++|++|++.|||..|.++ .|
T Consensus 13 ~~~~~l~V~nlp--~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr---~l 87 (95)
T 2ek1_A 13 PGPTVIKVQNMP--FTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR---KV 87 (95)
T ss_dssp --CEEEEEECCC--TTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE---EC
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCc---EE
Confidence 456899999765 6999999999999999998776543 221 13699999999999999999999999998 99
Q ss_pred EEEeeeC
Q 024708 133 HISYSRH 139 (264)
Q Consensus 133 rV~fSK~ 139 (264)
+|++++.
T Consensus 88 ~v~~a~s 94 (95)
T 2ek1_A 88 KLSGPSS 94 (95)
T ss_dssp EEECCC-
T ss_pred EEEeccC
Confidence 9999863
No 112
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=6.4e-14 Score=103.43 Aligned_cols=76 Identities=14% Similarity=0.071 Sum_probs=64.5
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccce
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 131 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~-----~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~ 131 (264)
.+++.|+|.+++ +.+|+++|+++|+.||.|.+|++...+ ++ .|||+|.+.++|+.|++.|||..|.++ .
T Consensus 3 ~~~~~l~v~nlp--~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g-~afV~f~~~~~a~~A~~~l~g~~~~g~---~ 76 (85)
T 1x4e_A 3 SGSSGLYIRGLQ--PGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKG-YGFVDFDSPSAAQKAVTALKASGVQAQ---M 76 (85)
T ss_dssp CCCCEEEEESCC--TTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCS-EEEEEESCHHHHHHHHHHHHHHTCCEE---S
T ss_pred CCCcEEEEeCCC--CCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCc-EEEEEECCHHHHHHHHHHhcCCeEeeE---E
Confidence 457899999765 699999999999999999999975432 23 699999999999999999999999987 7
Q ss_pred EEEEeee
Q 024708 132 LHISYSR 138 (264)
Q Consensus 132 LrV~fSK 138 (264)
|++++++
T Consensus 77 ~~~~~~~ 83 (85)
T 1x4e_A 77 AKQSGPS 83 (85)
T ss_dssp CCSSCCC
T ss_pred EeecCCC
Confidence 7776654
No 113
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.44 E-value=1.4e-13 Score=104.12 Aligned_cols=79 Identities=13% Similarity=0.187 Sum_probs=65.8
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEE-cCCC---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF-DKNG---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif-~K~~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
...++|+|.+++ +.+|+++|.++|+.||.|.++++. ++.. ...|||+|.+.++|+.|++.|||..|.++ .|
T Consensus 13 ~~~~~l~v~nLp--~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~---~l 87 (98)
T 2cqp_A 13 PGPTIIKVQNMP--FTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR---KV 87 (98)
T ss_dssp CSSEEEEEESCC--TTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTE---EC
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCe---EE
Confidence 456789998665 699999999999999999876643 2221 13699999999999999999999999998 99
Q ss_pred EEEeeeCC
Q 024708 133 HISYSRHT 140 (264)
Q Consensus 133 rV~fSK~~ 140 (264)
+|++++..
T Consensus 88 ~V~~a~~~ 95 (98)
T 2cqp_A 88 KLVLGSGP 95 (98)
T ss_dssp EEEESSCS
T ss_pred EEEEcCCC
Confidence 99998754
No 114
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.43 E-value=2.9e-13 Score=112.59 Aligned_cols=82 Identities=21% Similarity=0.277 Sum_probs=68.6
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC-C---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-G---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~-~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
.++++|+|.+++ +.+|+++|..+|+.||.|..|+|.... . ..+|||+|.+.++|+.|++.|||..|.++ .|
T Consensus 70 ~~~~~l~V~nLp--~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~---~l 144 (165)
T 1rk8_A 70 VEGWILFVTSIH--EEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQ---TI 144 (165)
T ss_dssp C-CEEEEEESCC--TTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTE---EC
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCE---EE
Confidence 456789999765 589999999999999999999976432 1 13699999999999999999999999998 99
Q ss_pred EEEeeeCCCCc
Q 024708 133 HISYSRHTDLS 143 (264)
Q Consensus 133 rV~fSK~~~l~ 143 (264)
+|.|++...-.
T Consensus 145 ~V~~a~~~~~~ 155 (165)
T 1rk8_A 145 QVDWCFVKGPK 155 (165)
T ss_dssp EEEESEECC--
T ss_pred EEEEecCCCCC
Confidence 99999876543
No 115
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.43 E-value=4.2e-13 Score=107.33 Aligned_cols=76 Identities=22% Similarity=0.300 Sum_probs=67.5
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEe
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 136 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~f 136 (264)
.+++.|+|.+ + .+|+++|.++|+.||.|.+|++.. .++ +|||+|++.++|+.|++.|||..|.++ .|+|+|
T Consensus 37 ~~~~~lfVgn--l--~~te~~L~~~F~~~G~I~~v~i~~-~kg-~aFV~f~~~~~A~~Ai~~lng~~~~g~---~l~V~~ 107 (121)
T 2bz2_A 37 RKGNTLYVYG--E--DMTPTLLRGAFSPFGNIIDLSMDP-PRN-CAFVTYEKMESADQAVAELNGTQVESV---QLKVNI 107 (121)
T ss_dssp CCCCEEEEEC--S--SCCHHHHHHHHSTTCCCSCEEEET-TTT-EEEEECSSHHHHHHHHHHHTTCBCSSC---BCEEEE
T ss_pred CCCCEEEEcC--C--CCCHHHHHHHHHccCCEEEEEEeC-CCC-EEEEEECCHHHHHHHHHHhCCCEECCe---EEEEEE
Confidence 4578999986 3 699999999999999999999874 335 699999999999999999999999988 999999
Q ss_pred eeCCC
Q 024708 137 SRHTD 141 (264)
Q Consensus 137 SK~~~ 141 (264)
++...
T Consensus 108 a~~~~ 112 (121)
T 2bz2_A 108 ARKQP 112 (121)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 98764
No 116
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=6.9e-13 Score=103.08 Aligned_cols=82 Identities=13% Similarity=0.147 Sum_probs=66.3
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCC---ceEEEEeCCHHHHHHHHHHhcCCeeCCCc-----
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGG---LQALIQYPDVQTAVVAKEALEGHCIYDGG----- 128 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g---~~AfVqF~d~e~A~~A~~~LnG~~I~g~~----- 128 (264)
.+.+.|+|.+++ +.+|+++|+++|+.||.|.+|+|.....+ ..|||+|.+.++|+.|++.|||..|.+..
T Consensus 23 ~~~~~l~V~nlp--~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 23 QDPTNLYISNLP--LSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCTTEEEEESCC--TTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 456789998665 68999999999999999999997543211 36999999999999999999999995320
Q ss_pred cceEEEEeeeCC
Q 024708 129 FCKLHISYSRHT 140 (264)
Q Consensus 129 ~c~LrV~fSK~~ 140 (264)
...|+|.|++..
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 127899998754
No 117
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.43 E-value=9.7e-14 Score=106.33 Aligned_cols=76 Identities=11% Similarity=0.243 Sum_probs=64.0
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC------CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccc
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN------GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 130 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~------~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c 130 (264)
...+.|+|.+++ +.+|+++|+++|+.|| |.+|+|...+ ++ .|||+|.+.++|+.|+ .|||..|.|+
T Consensus 17 ~~~~~l~V~nLp--~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g-~afV~f~~~~~a~~Ai-~l~g~~~~g~--- 88 (100)
T 2j76_E 17 SPPYTAFLGNLP--YDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKG-FGYAEFEDLDSLLSAL-SLNEESLGNR--- 88 (100)
T ss_dssp ---CEEEESCCS--SCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCS-CEEEEECCHHHHHHHH-HTTTCCBTTB---
T ss_pred CCCcEEEEeCCC--CCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCe-EEEEEECCHHHHHHHH-hcCCCEECCe---
Confidence 456899998665 6899999999999999 9999975332 34 6999999999999999 8999999998
Q ss_pred eEEEEeeeCC
Q 024708 131 KLHISYSRHT 140 (264)
Q Consensus 131 ~LrV~fSK~~ 140 (264)
.|+|++++..
T Consensus 89 ~l~V~~a~~~ 98 (100)
T 2j76_E 89 RIRVDVADQA 98 (100)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEeccCC
Confidence 8999998765
No 118
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.43 E-value=4.1e-13 Score=100.36 Aligned_cols=81 Identities=11% Similarity=0.051 Sum_probs=69.7
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEee
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 137 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~fS 137 (264)
.++.|+|.+++ +.+|+++|+++|+.| .|.+|++. +.++ .|||+|.+.++|+.|++.|||..|.|+ +|+|+|+
T Consensus 4 ~~~~l~V~nLp--~~~t~~~l~~~F~~~-~v~~~~i~-~~~g-~afV~f~~~~~a~~Ai~~l~g~~~~g~---~l~V~~a 75 (88)
T 1wg1_A 4 GSSGILVKNLP--QDSNCQEVHDLLKDY-DLKYCYVD-RNKR-TAFVTLLNGEQAQNAIQMFHQYSFRGK---DLIVQLQ 75 (88)
T ss_dssp CCCCEEEESCC--SSCCHHHHHHHTCSS-CCCCEEEE-GGGT-EEEECCSCHHHHHHHHHHHTTEEETTE---EEEEEEC
T ss_pred CCCEEEEeCCC--CCCCHHHHHHHHhhC-CeEEEEEe-CCCc-EEEEEECCHHHHHHHHHHhCCCeECCc---EEEEEEc
Confidence 35689998665 699999999999999 99999885 4445 699999999999999999999999998 9999999
Q ss_pred eCCCCceec
Q 024708 138 RHTDLSIKV 146 (264)
Q Consensus 138 K~~~l~vk~ 146 (264)
+...+-...
T Consensus 76 ~~~~~~~~~ 84 (88)
T 1wg1_A 76 PTDALLCSG 84 (88)
T ss_dssp CCCCCCSCC
T ss_pred CCCceEecC
Confidence 887654433
No 119
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.42 E-value=2.3e-13 Score=103.63 Aligned_cols=78 Identities=22% Similarity=0.256 Sum_probs=64.3
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEE-c-CCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF-D-KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 134 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif-~-K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV 134 (264)
.+++.|+|.+++ +.+|+++|+++|+.||.| +|... . +.++ .|||+|.+.++|+.|++.|||..|.++ .|+|
T Consensus 13 ~~~~~l~V~nLp--~~~t~~~l~~~F~~~g~v-~~~~~~~g~~~g-~afV~f~~~~~A~~A~~~l~g~~~~g~---~l~v 85 (101)
T 2fc9_A 13 GESKTLVLSNLS--YSATEETLQEVFEKATFI-KVPQNQNGKSKG-YAFIEFASFEDAKEALNSCNKREIEGR---AIRL 85 (101)
T ss_dssp CCCSEEEEESCC--TTCCHHHHHHHCSSCSEE-ECCBCSSSCBCS-EEEEECSSHHHHHHHHHHTSSEEETTE---EEEE
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHhCCEE-EEEECCCCCEee-EEEEEECCHHHHHHHHHHhCCCEeCCe---EEEE
Confidence 467899999765 589999999999999988 32211 1 1233 699999999999999999999999998 9999
Q ss_pred EeeeCCC
Q 024708 135 SYSRHTD 141 (264)
Q Consensus 135 ~fSK~~~ 141 (264)
+|++...
T Consensus 86 ~~a~~~~ 92 (101)
T 2fc9_A 86 ELQGPRG 92 (101)
T ss_dssp EECSSCC
T ss_pred EEcCCCC
Confidence 9997753
No 120
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.42 E-value=1e-12 Score=113.60 Aligned_cols=124 Identities=10% Similarity=0.104 Sum_probs=84.4
Q ss_pred eEEEEeecCCCcceeecC---CC---CCCCCCCCCCCCCcccccccCCccccCCCCCCCCCCcEEEEEEccCCcccCHHH
Q 024708 4 CTLRITYSAHTDLSVKFQ---SH---RSRDYTNPYLPVAPSAIDASGQLSVGLDGKKLEPESNVLLASIENMQYAVTLDV 77 (264)
Q Consensus 4 CtL~I~ySk~~~L~Vk~n---n~---~srDYTnp~Lp~~~~al~~~g~~~~~~~G~~~~~~s~VL~V~~lN~~~~VT~d~ 77 (264)
.+|+|+||+...+.-+.. .+ ..+||++..+.+..... ........+++++|+|.|++ +.+|+++
T Consensus 70 ~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~--------~~~~~~~~~p~~~l~v~NLp--~~~t~~~ 139 (205)
T 3tyt_A 70 QKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPE--------QAAKNRIQHPSNVLHFFNAP--LEVTEEN 139 (205)
T ss_dssp EECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHH--------HHTTSCCCCCCSEEEEEEEC--TTCCHHH
T ss_pred ceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcc--------cccccccCCCcceEEEeCCC--CCCCHHH
Confidence 478999999877522100 00 12455554332221100 00011234678999999876 5899999
Q ss_pred HHHHHhccCCe--eEEEEEcCCC--CceEEEEeCCHHHHHHHHHHhcCCeeCCCcc-ceEEEEee
Q 024708 78 LHMVFSAFGPV--QKIAMFDKNG--GLQALIQYPDVQTAVVAKEALEGHCIYDGGF-CKLHISYS 137 (264)
Q Consensus 78 L~~LFs~yG~V--~rIkif~K~~--g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~-c~LrV~fS 137 (264)
|+++|+.||.| .+|+++..++ ...|||+|++.++|..|+..|||..|.+.++ ..+.|.|+
T Consensus 140 L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 140 FFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred HHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 99999999999 8999876431 1479999999999999999999999988732 24666554
No 121
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.42 E-value=4.5e-13 Score=109.61 Aligned_cols=80 Identities=20% Similarity=0.282 Sum_probs=68.5
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC----CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~----~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
.....|+|.+++ +.+|+++|+++|+.||.|.+|+|...+ ....|||+|.+.++|+.|++.|||..|.|+ .|
T Consensus 68 ~~~~~l~v~nl~--~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l 142 (158)
T 2kn4_A 68 EGMTSLKVDNLT--YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR---EL 142 (158)
T ss_dssp CBCCEEEEESCC--TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSS---EE
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCe---EE
Confidence 446789999665 689999999999999999999975421 123699999999999999999999999998 99
Q ss_pred EEEeeeCCC
Q 024708 133 HISYSRHTD 141 (264)
Q Consensus 133 rV~fSK~~~ 141 (264)
+|+|++...
T Consensus 143 ~v~~a~~~~ 151 (158)
T 2kn4_A 143 RVQMARYGR 151 (158)
T ss_dssp EEEEECCSS
T ss_pred EEEECCCCC
Confidence 999998754
No 122
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.42 E-value=4.8e-13 Score=102.43 Aligned_cols=78 Identities=8% Similarity=0.177 Sum_probs=66.2
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCC----CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG----GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~----g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
.+++.|+|.+++ +.+|+++|+++|+.|| |.+|+|...+. ...|||+|++.++|+.|+ .|||..|.++ .|
T Consensus 13 ~~~~~l~V~nLp--~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~---~l 85 (103)
T 2dng_A 13 EPPYTAYVGNLP--FNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDR---SL 85 (103)
T ss_dssp SSCEEEEEESCC--TTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTE---EC
T ss_pred CCCeEEEEeCCC--CCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCe---EE
Confidence 456899998665 6999999999999997 99999754321 136999999999999999 8999999998 99
Q ss_pred EEEeeeCCC
Q 024708 133 HISYSRHTD 141 (264)
Q Consensus 133 rV~fSK~~~ 141 (264)
+|+|++...
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2dng_A 86 RVDIAEGRK 94 (103)
T ss_dssp EEEECCCCC
T ss_pred EEEEecCCC
Confidence 999997654
No 123
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=4.9e-13 Score=104.69 Aligned_cols=82 Identities=17% Similarity=0.208 Sum_probs=67.1
Q ss_pred CCCCcEEEEEEccCCccc---------CHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCC
Q 024708 56 EPESNVLLASIENMQYAV---------TLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 126 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~V---------T~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g 126 (264)
..++++|+|.|+-....+ ++++|+++|++||.|.+|+|.++.....|||+|.+.++|+.|++.|||..|.+
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 456899999976322121 36899999999999999988765423369999999999999999999999998
Q ss_pred CccceEEEEeeeCC
Q 024708 127 GGFCKLHISYSRHT 140 (264)
Q Consensus 127 ~~~c~LrV~fSK~~ 140 (264)
+ +|+|+|++..
T Consensus 92 r---~l~v~~a~~~ 102 (112)
T 2dit_A 92 R---QITAQAWDGT 102 (112)
T ss_dssp E---ECEEEECCSC
T ss_pred c---EEEEEEeCCC
Confidence 8 9999998764
No 124
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.42 E-value=1.8e-13 Score=102.76 Aligned_cols=76 Identities=14% Similarity=0.137 Sum_probs=60.6
Q ss_pred EEEEEEccCCcccCHHHHHHHHhccC--CeeEEEEEcC-CCC---ceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEE
Q 024708 61 VLLASIENMQYAVTLDVLHMVFSAFG--PVQKIAMFDK-NGG---LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 134 (264)
Q Consensus 61 VL~V~~lN~~~~VT~d~L~~LFs~yG--~V~rIkif~K-~~g---~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV 134 (264)
.|+|.+++ +.+|+++|+++|+.|| .|.+|++... ..+ ..|||+|++.++|+.|++.|||..|.|+ .|+|
T Consensus 3 ~l~V~nL~--~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr---~i~V 77 (90)
T 3p5t_L 3 ALYIGNLT--WWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ---NPVV 77 (90)
T ss_dssp -CEEESCC--TTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSC---CCEE
T ss_pred EEEEeCCC--CCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCE---EEEE
Confidence 57777654 6999999999999999 9999997542 211 3699999999999999999999999998 9999
Q ss_pred EeeeCCC
Q 024708 135 SYSRHTD 141 (264)
Q Consensus 135 ~fSK~~~ 141 (264)
++++...
T Consensus 78 ~~~~~~~ 84 (90)
T 3p5t_L 78 TPSNKLE 84 (90)
T ss_dssp CCC----
T ss_pred EECCCCc
Confidence 9987653
No 125
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.42 E-value=4.6e-13 Score=112.27 Aligned_cols=81 Identities=30% Similarity=0.452 Sum_probs=71.2
Q ss_pred CcEEEEEEccCCc-ccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEee
Q 024708 59 SNVLLASIENMQY-AVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 137 (264)
Q Consensus 59 s~VL~V~~lN~~~-~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~fS 137 (264)
+++|+|.+++ . .+|+++|+++|+.||.|.+|++...+++ .|||+|.+.++|+.|++.|||..|.|+ .|+|+|+
T Consensus 3 ~~~l~v~nlp--~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g-~afV~f~~~~~a~~A~~~l~~~~~~g~---~l~v~~a 76 (198)
T 1qm9_A 3 NSVLLVSNLN--PERVTPQSLFILFGVYGDVQRVKILFNKKE-NALVQMADGNQAQLAMSHLNGHKLHGK---PIRITLS 76 (198)
T ss_dssp CCEEEEECCC--SSSCCHHHHHHHHHTTCCCSEEECSTTCSS-CCEEECTTTHHHHHHHHHHTTCCCSSC---CCEEEEC
T ss_pred CcEEEEeCCC--cccCCHHHHHHHHHhcCCEEEEEEEeCCCC-EEEEEECCHHHHHHHHHHhCCCeecCe---EEEEEEe
Confidence 5789999665 6 8999999999999999999998765545 599999999999999999999999998 9999999
Q ss_pred eCCCCcee
Q 024708 138 RHTDLSIK 145 (264)
Q Consensus 138 K~~~l~vk 145 (264)
+.......
T Consensus 77 ~~~~~~~~ 84 (198)
T 1qm9_A 77 KHQNVQLP 84 (198)
T ss_dssp CCCSCCCS
T ss_pred cCCCcCCC
Confidence 88765443
No 126
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.41 E-value=1.7e-13 Score=102.14 Aligned_cols=77 Identities=12% Similarity=0.164 Sum_probs=62.8
Q ss_pred cEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC----CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEE
Q 024708 60 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 135 (264)
Q Consensus 60 ~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~----~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~ 135 (264)
+.|+|.+++ ..+|+++|.++|+.||.|.+|++.... ....|||+|++.+ |+.|++.|||..|.|+ .|+|+
T Consensus 2 ~~l~V~nLp--~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~---~l~V~ 75 (90)
T 2ki2_A 2 RNIYVGNLV--YSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGR---TIRVT 75 (90)
T ss_dssp EEEEEEEEC--TTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSS---SCSEE
T ss_pred cEEEECCCC--CCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCe---EEEEE
Confidence 468888776 599999999999999999999985321 1236999999999 9999999999999998 99999
Q ss_pred eeeCCCC
Q 024708 136 YSRHTDL 142 (264)
Q Consensus 136 fSK~~~l 142 (264)
+|+....
T Consensus 76 ~a~~~~~ 82 (90)
T 2ki2_A 76 EANPKKS 82 (90)
T ss_dssp EC-----
T ss_pred EcCCCCC
Confidence 9877543
No 127
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.41 E-value=5.4e-13 Score=103.16 Aligned_cols=77 Identities=17% Similarity=0.248 Sum_probs=65.2
Q ss_pred CCcEEEEEEccCCccc------CHHHHHHHHhccCCeeEEEEEcCC---CCceEEEEeCCHHHHHHHHHHhcCCeeCCCc
Q 024708 58 ESNVLLASIENMQYAV------TLDVLHMVFSAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGG 128 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~V------T~d~L~~LFs~yG~V~rIkif~K~---~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~ 128 (264)
.++.|+|.+++ +.+ |+++|.++|+.||.|.+|+|.+.. +| .|||+|.+.++|+.|++.|||..|.|+
T Consensus 14 ~~~~l~V~nLp--~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G-~afV~f~~~~~A~~Ai~~l~g~~~~g~- 89 (105)
T 2nlw_A 14 IDSVIVVDNVP--QVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKG-YIFLEYASPAHAVDAVKNADGYKLDKQ- 89 (105)
T ss_dssp CCSEEEEESCC--CCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCC-EEEEEECSSSHHHHHHHHCSSEECSTT-
T ss_pred CCCEEEEeCCC--cchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeee-EEEEEECCHHHHHHHHHHhCCcccCCC-
Confidence 46789999776 577 789999999999999999986422 34 699999999999999999999999884
Q ss_pred cceEEEEeeeC
Q 024708 129 FCKLHISYSRH 139 (264)
Q Consensus 129 ~c~LrV~fSK~ 139 (264)
.+|+|++++.
T Consensus 90 -~~l~V~~a~~ 99 (105)
T 2nlw_A 90 -HTFRVNLFTD 99 (105)
T ss_dssp -CEEEEECSCC
T ss_pred -ceEEEEEcch
Confidence 3799999864
No 128
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.40 E-value=1.9e-13 Score=109.63 Aligned_cols=80 Identities=15% Similarity=0.266 Sum_probs=67.2
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeE--EEEEc-C----CCCceEEEEeCCHHHHHHHHHHhcCC----eeC
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK--IAMFD-K----NGGLQALIQYPDVQTAVVAKEALEGH----CIY 125 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~r--Ikif~-K----~~g~~AfVqF~d~e~A~~A~~~LnG~----~I~ 125 (264)
.+++.|+|.+++ +.+|+++|+++|+.||.|.. |+|.. + .+| .|||+|++. +|..|++.|||. .|.
T Consensus 21 ~~~~~lfV~nL~--~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG-~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 21 NANDTIILRNLN--PHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRG-FAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCCCEEEECSCC--TTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCS-CEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcce-EEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 457789998665 69999999999999999966 88643 3 134 599999999 999999999999 999
Q ss_pred CCccceEEEEeeeCCCCc
Q 024708 126 DGGFCKLHISYSRHTDLS 143 (264)
Q Consensus 126 g~~~c~LrV~fSK~~~l~ 143 (264)
|+ .|+|+|++...-.
T Consensus 97 gr---~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 97 GK---TINVEFAKGSKRD 111 (131)
T ss_dssp GC---CCCCEECCCSCCC
T ss_pred CE---EEEEEECCCCCCC
Confidence 98 9999999875433
No 129
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.40 E-value=6e-13 Score=104.83 Aligned_cols=74 Identities=11% Similarity=0.118 Sum_probs=62.3
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccce-----E
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK-----L 132 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~-----L 132 (264)
....|+|.|++ +.+|+++|.++|+.||.|..|+|... + .|||+|++.++|+.|++.|||..|.++ . |
T Consensus 15 ~~~~l~V~nLp--~~~t~~~l~~~F~~~G~v~~~~i~~~--g-~afV~f~~~~~a~~Ai~~l~g~~~~gr---~~~~~~i 86 (115)
T 3beg_B 15 SENRVVVSGLP--PSGSWQDLKDHMREAGDVCYADVYRD--G-TGVVEFVRKEDMTYAVRKLDNTKFRSH---EGETAYI 86 (115)
T ss_dssp --CCEEEEECC--SSCCTTHHHHHHGGGSCEEEEEECTT--S-EEEEEESSHHHHHHHHHHHTTCBCCCT---TSCCCBC
T ss_pred CCcEEEEeCCC--CCCCHHHHHHHHHhcCCeEEEEEecC--C-EEEEEECCHHHHHHHHHHhCCCEECCc---EeeeEEE
Confidence 35789999776 69999999999999999999998754 4 699999999999999999999999998 5 5
Q ss_pred EEEeeeC
Q 024708 133 HISYSRH 139 (264)
Q Consensus 133 rV~fSK~ 139 (264)
+|+.++.
T Consensus 87 ~v~~~~~ 93 (115)
T 3beg_B 87 RVKVDGP 93 (115)
T ss_dssp EEEECC-
T ss_pred EeccCCC
Confidence 5555544
No 130
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.40 E-value=1.3e-12 Score=96.65 Aligned_cols=75 Identities=11% Similarity=0.117 Sum_probs=63.1
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCC----CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG----GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~----g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
.+++.|+|.+++ +.+|+++|+++|+.||.|.+|++...+. ...|||+|.+.++|+.|++ ++|..|.|+ .|
T Consensus 9 ~~~~~l~V~nlp--~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~---~i 82 (87)
T 3s7r_A 9 EDAGKMFVGGLS--WDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGR---VI 82 (87)
T ss_dssp SCTTEEEEECCC--TTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTE---EE
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCE---EE
Confidence 467899999776 6999999999999999999999754321 1369999999999999996 588889888 89
Q ss_pred EEEee
Q 024708 133 HISYS 137 (264)
Q Consensus 133 rV~fS 137 (264)
+|++|
T Consensus 83 ~v~~A 87 (87)
T 3s7r_A 83 DPKKA 87 (87)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99875
No 131
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.40 E-value=2.8e-13 Score=110.04 Aligned_cols=80 Identities=20% Similarity=0.282 Sum_probs=68.5
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC----CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~----~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
.+++.|+|.+++ +.+|+++|.++|+.||.|.+|+|...+ ....|||+|++.++|+.|++.|||..|.++ .|
T Consensus 45 ~~~~~l~V~nLp--~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~---~l 119 (135)
T 2lea_A 45 EGMTSLKVDNLT--YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR---EL 119 (135)
T ss_dssp GGCCCEEEECCC--SSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS---CC
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE---EE
Confidence 346789999775 589999999999999999999975321 113699999999999999999999999998 99
Q ss_pred EEEeeeCCC
Q 024708 133 HISYSRHTD 141 (264)
Q Consensus 133 rV~fSK~~~ 141 (264)
+|+|++...
T Consensus 120 ~V~~a~~~~ 128 (135)
T 2lea_A 120 RVQMARYGR 128 (135)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCCC
Confidence 999998754
No 132
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.39 E-value=3.8e-13 Score=101.39 Aligned_cols=79 Identities=20% Similarity=0.199 Sum_probs=65.7
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEe
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 136 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~f 136 (264)
.+++.|+|.+++ +.+|+++|.++|+.||.|..| .........|||+|.+.++|+.|++.|||..|.|+ .|+|+|
T Consensus 14 ~~~~~l~V~nL~--~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l~v~~ 87 (96)
T 1fjc_A 14 RAARTLLAKNLS--FNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGR---SVSLYY 87 (96)
T ss_dssp TGGGEEEEESCC--SSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTE---EEEEEE
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe---EEEEEE
Confidence 456899999765 699999999999999999877 22211123699999999999999999999999998 999999
Q ss_pred eeCCC
Q 024708 137 SRHTD 141 (264)
Q Consensus 137 SK~~~ 141 (264)
++...
T Consensus 88 a~~~~ 92 (96)
T 1fjc_A 88 TGEKG 92 (96)
T ss_dssp CSSSC
T ss_pred cCCCC
Confidence 87653
No 133
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.39 E-value=1.7e-12 Score=114.76 Aligned_cols=81 Identities=25% Similarity=0.411 Sum_probs=70.2
Q ss_pred CCCCcEEEEEEccCCcccCHHHHH----HHHhccCCeeEEEEEc--CCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCcc
Q 024708 56 EPESNVLLASIENMQYAVTLDVLH----MVFSAFGPVQKIAMFD--KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGF 129 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~----~LFs~yG~V~rIkif~--K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~ 129 (264)
..++++|+|.+++ +.+|+++|+ ++|+.||.|.+|++.+ +.++ +|||+|.+.++|+.|++.|||..|.++
T Consensus 6 ~~~~~~l~V~nlp--~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g-~afV~f~~~~~a~~A~~~l~g~~~~g~-- 80 (282)
T 3pgw_A 6 TRPNHTIYINNLN--EKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRG-QAFVIFKEVSSATNALRSMQGFPFYDK-- 80 (282)
T ss_pred CCCCCEEEEeCCC--CCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcce-EEEEEECCHHHHHHHHHHhcCCeeCCc--
Confidence 3568899999776 699999955 9999999999999864 2233 699999999999999999999999998
Q ss_pred ceEEEEeeeCCCC
Q 024708 130 CKLHISYSRHTDL 142 (264)
Q Consensus 130 c~LrV~fSK~~~l 142 (264)
.|+|+|++....
T Consensus 81 -~l~v~~a~~~~~ 92 (282)
T 3pgw_A 81 -PMRIQYAKTDSD 92 (282)
T ss_pred -EEEEEEeccCcc
Confidence 999999987654
No 134
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.39 E-value=2.9e-13 Score=99.59 Aligned_cols=66 Identities=20% Similarity=0.288 Sum_probs=56.5
Q ss_pred CcEEEEEEccCCccc------CHHHHHHHHhccCCeeEEEEEcCC---CCceEEEEeCCHHHHHHHHHHhcCCeeCCC
Q 024708 59 SNVLLASIENMQYAV------TLDVLHMVFSAFGPVQKIAMFDKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDG 127 (264)
Q Consensus 59 s~VL~V~~lN~~~~V------T~d~L~~LFs~yG~V~rIkif~K~---~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~ 127 (264)
+++|+|.+++ +.+ |+++|.++|+.||.|.+|++.++. ++ .|||+|++.++|+.|++.|||..|.|+
T Consensus 1 ~~~l~V~nLp--~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g-~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 1 DSVIVVDNVP--QVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKG-YIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CCEEEEESCC--CCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCC-EEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CCEEEEeCCC--CCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeE-EEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 3688998775 577 789999999999999999986422 34 699999999999999999999999875
No 135
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.38 E-value=1.1e-12 Score=102.29 Aligned_cols=78 Identities=12% Similarity=0.129 Sum_probs=64.5
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccce
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 131 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~-----~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~ 131 (264)
.+++.|+|.+++ +.+|+++|+++|+.||.|.+|++...+ ++ .|||+|.+.++|+.|++.+ |..|.|+ .
T Consensus 23 ~~~~~lfV~nLp--~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg-~afV~f~~~~~A~~Ai~~~-~~~l~g~---~ 95 (109)
T 2rs2_A 23 SSGCKMFIGGLS--WQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRG-FGFVTFMDQAGVDKVLAQS-RHELDSK---T 95 (109)
T ss_dssp ---CCEEEESCC--TTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTT-CEEEEESSHHHHHHHHHSS-CEEETTE---E
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCc-EEEEEECCHHHHHHHHHHC-CCcCCCE---E
Confidence 456789999665 699999999999999999999985432 23 6999999999999999987 5888887 9
Q ss_pred EEEEeeeCCC
Q 024708 132 LHISYSRHTD 141 (264)
Q Consensus 132 LrV~fSK~~~ 141 (264)
|+|++++...
T Consensus 96 l~V~~a~~~~ 105 (109)
T 2rs2_A 96 IDPKVAFPRR 105 (109)
T ss_dssp EEEEECCCCC
T ss_pred EEEEEccCCC
Confidence 9999998654
No 136
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.38 E-value=1.2e-12 Score=105.81 Aligned_cols=79 Identities=19% Similarity=0.288 Sum_probs=68.0
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcC-CC---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEE
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-NG---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 133 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K-~~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~Lr 133 (264)
+++.|+|.+++ ..+|+++|+++|+.||.|.+|++... .. ...|||+|.+.++|+.|++.|||..|.++ .|+
T Consensus 2 ~~~~l~v~nlp--~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~---~l~ 76 (168)
T 1b7f_A 2 SNTNLIVNYLP--QDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNK---RLK 76 (168)
T ss_dssp CCSEEEEECCC--TTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred CccEEEEeCCC--CCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCc---EEE
Confidence 46789999776 58999999999999999999997532 21 13699999999999999999999999988 999
Q ss_pred EEeeeCCC
Q 024708 134 ISYSRHTD 141 (264)
Q Consensus 134 V~fSK~~~ 141 (264)
|.|++...
T Consensus 77 v~~~~~~~ 84 (168)
T 1b7f_A 77 VSYARPGG 84 (168)
T ss_dssp EEECCCCS
T ss_pred EEecCCCc
Confidence 99998654
No 137
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=5.2e-13 Score=102.38 Aligned_cols=81 Identities=12% Similarity=0.185 Sum_probs=68.2
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC-C---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccce
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-G---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 131 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~-~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~ 131 (264)
..+.+.|+|.+++ +.+|+++|+++|+.||.|.+|+|...+ . ...|||+|++.++|+.|++. ||..|.++ .
T Consensus 13 ~~~~~~l~V~nlp--~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~---~ 86 (105)
T 2dh8_A 13 ADEIGKLFVGGLD--WSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGR---N 86 (105)
T ss_dssp SSSSSEECCBSCC--TTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTE---E
T ss_pred CCCCCEEEEeCCC--CCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCE---E
Confidence 3566889988665 689999999999999999999976432 1 13699999999999999999 99999998 9
Q ss_pred EEEEeeeCCCC
Q 024708 132 LHISYSRHTDL 142 (264)
Q Consensus 132 LrV~fSK~~~l 142 (264)
|+|++++....
T Consensus 87 l~V~~a~~~~~ 97 (105)
T 2dh8_A 87 IDPKPCTPRGM 97 (105)
T ss_dssp EBCCCSCCSSC
T ss_pred EEEEEccCCCC
Confidence 99999876543
No 138
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=7.5e-13 Score=103.22 Aligned_cols=76 Identities=17% Similarity=0.159 Sum_probs=65.5
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcC----CCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K----~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
..++.|+|.+++ +.+|+++|.++|+.||.|.+|+|... .+| .|||+|++.++|+.|++ +||..|.|+ .|
T Consensus 9 ~~~~~lfV~~Lp--~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG-~aFV~F~~~e~a~~Ai~-~~~~~~~gr---~l 81 (103)
T 1s79_A 9 VKNRSVYIKGFP--TDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKG-SIFVVFDSIESAKKFVE-TPGQKYKET---DL 81 (103)
T ss_dssp SGGGCEEEECCC--TTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCC-EEEEEESSHHHHHHHHT-SSCCCCTTT---TC
T ss_pred CCCCEEEEECCC--CCCCHHHHHHHHhhcCCEEEEEEEECCCCCCcc-EEEEEECCHHHHHHHHH-cCCCEECCE---EE
Confidence 346789999775 58999999999999999999998642 234 69999999999999999 999999998 89
Q ss_pred EEEeeeC
Q 024708 133 HISYSRH 139 (264)
Q Consensus 133 rV~fSK~ 139 (264)
+|.+++.
T Consensus 82 ~V~~~~~ 88 (103)
T 1s79_A 82 LILFKDD 88 (103)
T ss_dssp EEEEHHH
T ss_pred EEEEchH
Confidence 9998754
No 139
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.38 E-value=1.6e-12 Score=104.50 Aligned_cols=78 Identities=18% Similarity=0.324 Sum_probs=67.6
Q ss_pred CcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC-CC---ceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEE
Q 024708 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-GG---LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 134 (264)
Q Consensus 59 s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~-~g---~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV 134 (264)
++.|+|.+++ ..+|+++|+++|+.||.|.+|++...+ .+ ..|||+|.+.++|+.|++.|||..|.++ .|+|
T Consensus 2 ~~~l~v~nlp--~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~---~l~v 76 (167)
T 1fxl_A 2 KTNLIVNYLP--QNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTK---TIKV 76 (167)
T ss_dssp CSEEEEESCC--TTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE---ECEE
T ss_pred cceEEEcCCC--CCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCc---eEEE
Confidence 5789998665 589999999999999999999976432 11 4799999999999999999999999998 9999
Q ss_pred EeeeCCC
Q 024708 135 SYSRHTD 141 (264)
Q Consensus 135 ~fSK~~~ 141 (264)
.+++...
T Consensus 77 ~~~~~~~ 83 (167)
T 1fxl_A 77 SYARPSS 83 (167)
T ss_dssp EECCCCC
T ss_pred EecCCCc
Confidence 9998654
No 140
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.38 E-value=1.6e-12 Score=108.54 Aligned_cols=81 Identities=16% Similarity=0.176 Sum_probs=68.0
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccC--CeeEEEEE-cCCCC---ceEEEEeCCHHHHHHHHHHhcCCeeCCCccce
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFG--PVQKIAMF-DKNGG---LQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 131 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG--~V~rIkif-~K~~g---~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~ 131 (264)
..+.|+|.+|+ +.+|+++|.++|+.|| .|.+|+|. ++..+ ..|||+|.+.++|+.|++.|||..|.|+ .
T Consensus 54 ~~~~lfVgnLp--~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr---~ 128 (156)
T 3n9u_C 54 RRAAVYVGSFS--WWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGE---K 128 (156)
T ss_dssp --CEEEEECCC--TTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTE---E
T ss_pred CCCEEEEeCCC--CCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCe---E
Confidence 45789999765 6999999999999999 99999975 32211 3699999999999999999999999998 9
Q ss_pred EEEEeeeCCCCc
Q 024708 132 LHISYSRHTDLS 143 (264)
Q Consensus 132 LrV~fSK~~~l~ 143 (264)
|+|++++..++.
T Consensus 129 l~V~~a~~~~~~ 140 (156)
T 3n9u_C 129 VDVRPATRQNLS 140 (156)
T ss_dssp CEEEECCHHHHH
T ss_pred eEEEEcCCCcch
Confidence 999999776543
No 141
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.37 E-value=1.6e-12 Score=98.25 Aligned_cols=77 Identities=17% Similarity=0.195 Sum_probs=60.5
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEe
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 136 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~f 136 (264)
.+...|+|.+++ +.+|+++|+++|++||.|.+|+|..+.+| .|||+|++.++|+ .|+|..+..+ ...|+|.+
T Consensus 9 ~~~~~l~V~~Lp--~~~te~~L~~~F~~~G~i~~v~i~~~srG-faFV~F~~~~~A~----~~~~~~~~~~-g~~v~v~~ 80 (89)
T 3d2w_A 9 HHGSKVFVGRCT--EDMTAEELQQFFCQYGEVVDVFIPKPFRA-FAFVTFADDKVAQ----SLCGEDLIIK-GISVHISN 80 (89)
T ss_dssp --CCEEEEESCC--TTCCHHHHHHHHTTTSCEEEEECCSSCCS-EEEEEESCHHHHH----HHTTCEEEET-TEEEEEEE
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHhccCCEEEEEEeeCCCC-EEEEEECCHHHHH----HHcCCCcccC-CEEEEEEE
Confidence 456799998665 69999999999999999999998766656 5999999999988 4788877633 24899999
Q ss_pred eeCCC
Q 024708 137 SRHTD 141 (264)
Q Consensus 137 SK~~~ 141 (264)
++...
T Consensus 81 a~~k~ 85 (89)
T 3d2w_A 81 AEPKH 85 (89)
T ss_dssp CC---
T ss_pred cCCCC
Confidence 87654
No 142
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=2.9e-12 Score=95.75 Aligned_cols=77 Identities=5% Similarity=0.028 Sum_probs=66.1
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCC---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 133 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~Lr 133 (264)
...++|+|.+++ +.+|+++|+++|+.| .|.+|+|..... ...|||+|++.++|+.|++ |||..|.++ .|+
T Consensus 8 ~~~~~l~v~nLp--~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr---~i~ 80 (91)
T 2dgw_A 8 TTCHTVKLRGAP--FNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGR---YIE 80 (91)
T ss_dssp CCCCEEEEECCC--SSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTE---EEE
T ss_pred CCccEEEEECCC--CCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCc---EEE
Confidence 346789998665 699999999999999 999999754321 1369999999999999999 999999998 999
Q ss_pred EEeeeCC
Q 024708 134 ISYSRHT 140 (264)
Q Consensus 134 V~fSK~~ 140 (264)
|.+++..
T Consensus 81 v~~a~~~ 87 (91)
T 2dgw_A 81 VFREKSG 87 (91)
T ss_dssp EEEESSC
T ss_pred EEECCcC
Confidence 9999765
No 143
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=1.8e-12 Score=101.19 Aligned_cols=79 Identities=10% Similarity=0.122 Sum_probs=67.3
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCC----CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEE
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG----GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 133 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~----g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~Lr 133 (264)
+.+.|+|.+++ +.+|+++|+++|+.||.|.+|+|...+. ...|||+|.+.++|+.|++. ||..|.++ .|+
T Consensus 26 ~~~~l~V~nLp--~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~---~l~ 99 (116)
T 1x4b_A 26 QFRKLFIGGLS--FETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGR---VVE 99 (116)
T ss_dssp HHTEEEEECCT--TCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTE---EEE
T ss_pred CCCEEEEeCCC--CCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCE---EEE
Confidence 35789998765 6999999999999999999999865321 13699999999999999998 99999998 999
Q ss_pred EEeeeCCCC
Q 024708 134 ISYSRHTDL 142 (264)
Q Consensus 134 V~fSK~~~l 142 (264)
|++++...-
T Consensus 100 V~~a~~~~~ 108 (116)
T 1x4b_A 100 PKRAVAREE 108 (116)
T ss_dssp EECCSSCCC
T ss_pred EEECCCCcc
Confidence 999987653
No 144
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.37 E-value=1.3e-12 Score=111.01 Aligned_cols=80 Identities=19% Similarity=0.201 Sum_probs=69.2
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcC----CCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K----~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
.+++.|+|.+++ +.+|+++|.++|+.||.|++|+|... .++ .|||+|.+.++|+.|++.|||..|.++ .|
T Consensus 86 ~~~~~l~V~nLp--~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG-~afV~F~~~~~A~~Ai~~lng~~l~Gr---~l 159 (177)
T 2f3j_A 86 ETGAKLLVSNLD--FGVSDADIQELFAEFGTLKKAAVDYDRSGRSLG-TADVHFERRADALKAMKQYKGVPLDGR---PM 159 (177)
T ss_dssp TTCEEEEEECCC--SCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSC-CEEEEESCHHHHHHHHHHSTTCBCSSS---BC
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHhcCCeEEEEEEECCCCCEee-EEEEEeCCHHHHHHHHHHhCCCEECCE---EE
Confidence 457899999765 69999999999999999999998542 223 699999999999999999999999998 99
Q ss_pred EEEeeeCCCC
Q 024708 133 HISYSRHTDL 142 (264)
Q Consensus 133 rV~fSK~~~l 142 (264)
+|+||.....
T Consensus 160 ~V~~a~~~~~ 169 (177)
T 2f3j_A 160 DIQLVASQID 169 (177)
T ss_dssp EEEEESSGGG
T ss_pred EEEEecCCCC
Confidence 9999976543
No 145
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.37 E-value=7.8e-13 Score=95.37 Aligned_cols=70 Identities=11% Similarity=0.129 Sum_probs=59.5
Q ss_pred EEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC----CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEee
Q 024708 62 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 137 (264)
Q Consensus 62 L~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~----~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~fS 137 (264)
|+|.+++ +.+|+++|.++|+.||.|.+|++...+ ....|||+|.+.++|+.|++ |||..|.|+ .|+|++|
T Consensus 2 l~v~nlp--~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~---~l~v~~A 75 (75)
T 2mss_A 2 IFVGGLS--VNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNK---MVECKKA 75 (75)
T ss_dssp EEEECCC--SSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSC---CCEEECC
T ss_pred EEEecCC--CCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCE---EEEEEeC
Confidence 6777554 699999999999999999999975432 12369999999999999998 999999998 8999875
No 146
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.37 E-value=3.2e-12 Score=102.68 Aligned_cols=77 Identities=23% Similarity=0.361 Sum_probs=66.9
Q ss_pred cEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCC---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEe
Q 024708 60 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 136 (264)
Q Consensus 60 ~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~f 136 (264)
++|+|.+++ ..+|+++|+++|+.||.|.+|++...+. ...|||+|.+.++|+.|++.|||..|.++ .|+|++
T Consensus 1 R~l~V~nlp--~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~---~i~v~~ 75 (166)
T 3md3_A 1 RVLYVGNLD--KAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENN---IVKINW 75 (166)
T ss_dssp CEEEEEEEE--TTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTE---ECEEEE
T ss_pred CEEEECCCC--CcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCC---eeEEEE
Confidence 478999886 5999999999999999999999864331 13699999999999999999999999998 999999
Q ss_pred eeCCC
Q 024708 137 SRHTD 141 (264)
Q Consensus 137 SK~~~ 141 (264)
++...
T Consensus 76 ~~~~~ 80 (166)
T 3md3_A 76 AFQSQ 80 (166)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87654
No 147
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.36 E-value=6.8e-13 Score=113.87 Aligned_cols=79 Identities=15% Similarity=0.198 Sum_probs=67.3
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCC--CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEE
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG--GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 135 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~--g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~ 135 (264)
....|+|.+++ +.+|+++|+++|+.||.|.+|+|....+ ...|||+|.+.++|++|++.|||..|.|+ .|+|+
T Consensus 102 ~~~~l~v~nl~--~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~---~i~V~ 176 (213)
T 4f02_A 102 GVGNIFIKNLD--KSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDR---KVFVG 176 (213)
T ss_dssp CTTEEEEESCC--TTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTE---ECEEE
T ss_pred ccccceECCcc--cccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCE---EEEEE
Confidence 34678888665 6999999999999999999999754321 13699999999999999999999999998 99999
Q ss_pred eeeCCC
Q 024708 136 YSRHTD 141 (264)
Q Consensus 136 fSK~~~ 141 (264)
|++.+.
T Consensus 177 ~a~~~~ 182 (213)
T 4f02_A 177 RFKSRK 182 (213)
T ss_dssp ECCCHH
T ss_pred EcCCCc
Confidence 998653
No 148
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.36 E-value=1.8e-12 Score=104.95 Aligned_cols=80 Identities=15% Similarity=0.230 Sum_probs=67.6
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeE--------EEEEc--CCCCceEEEEeCCHHHHHHHHHHhcCCeeC
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK--------IAMFD--KNGGLQALIQYPDVQTAVVAKEALEGHCIY 125 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~r--------Ikif~--K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~ 125 (264)
..+++.|+|.|++ +.+|+++|..+|+.||.|.+ |++.. +.+ .+|||+|.+.++|..|++.|||..|.
T Consensus 42 ~~~~~~l~V~nLp--~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~-g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLA--KHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMK-GQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CSCCSEEEEEEEC--TTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTE-EEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCEEEEeCCC--CCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcc-cEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 4567899999887 58999999999999999876 43322 222 36999999999999999999999999
Q ss_pred CCccceEEEEeeeCCC
Q 024708 126 DGGFCKLHISYSRHTD 141 (264)
Q Consensus 126 g~~~c~LrV~fSK~~~ 141 (264)
|+ .|+|+||+...
T Consensus 119 g~---~l~V~~a~~~~ 131 (143)
T 3egn_A 119 GK---PMVVQFARSAR 131 (143)
T ss_dssp TE---ECEEEECCCSC
T ss_pred Cc---EEEEEECCCCC
Confidence 98 99999998754
No 149
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.36 E-value=3e-12 Score=102.80 Aligned_cols=78 Identities=14% Similarity=0.168 Sum_probs=66.9
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcC-CC---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-NG---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K-~~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
.++..|+|.+++ +.+|+++|.++|+.||.|.+|++... .. ...|||+|.+.++|..|++.|||..|.|+ .|
T Consensus 85 ~~~~~l~v~nl~--~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---~i 159 (166)
T 3md3_A 85 DDTFNLFVGDLN--VNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR---PL 159 (166)
T ss_dssp TTCEEEEEESCC--TTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTE---EC
T ss_pred CCCceEEECCCC--CCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCc---EE
Confidence 456789998665 69999999999999999999997532 21 13699999999999999999999999987 99
Q ss_pred EEEeeeC
Q 024708 133 HISYSRH 139 (264)
Q Consensus 133 rV~fSK~ 139 (264)
+|+||+.
T Consensus 160 ~v~~a~~ 166 (166)
T 3md3_A 160 RINWAAK 166 (166)
T ss_dssp EEEESCC
T ss_pred EEEecCC
Confidence 9999873
No 150
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.36 E-value=2.7e-12 Score=108.11 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=68.5
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC-C---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEE
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-G---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 133 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~-~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~Lr 133 (264)
.+++|+|.+++ +.+|+++|+++|+.||.|.+|++.... . ...|||+|.+.++|..|++.|||..|.|+ .|+
T Consensus 124 ~~~~l~v~nlp--~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~---~i~ 198 (216)
T 2qfj_A 124 AFNRIYVASVH--QDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQ---YLR 198 (216)
T ss_dssp TSCEEEEECCC--TTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSS---BCE
T ss_pred CCcEEEEeCCC--CcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCc---EEE
Confidence 45789998765 589999999999999999999986432 1 13699999999999999999999999998 999
Q ss_pred EEeeeCCCC
Q 024708 134 ISYSRHTDL 142 (264)
Q Consensus 134 V~fSK~~~l 142 (264)
|+|++....
T Consensus 199 V~~a~~~~~ 207 (216)
T 2qfj_A 199 VGKAVTPPM 207 (216)
T ss_dssp EEECSSCSS
T ss_pred EEEecCCCC
Confidence 999987643
No 151
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.35 E-value=2.1e-12 Score=103.84 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=65.4
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC-C---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEE
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-G---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 133 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~-~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~Lr 133 (264)
.++.|+|.+++ +.+|+++|+++|+.||.|.+|++...+ . ...|||+|.+.++|..|++.|||..|.|+ .+.|+
T Consensus 87 ~~~~l~v~nl~--~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~~~i~ 163 (167)
T 1fxl_A 87 RDANLYVSGLP--KTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA-TEPIT 163 (167)
T ss_dssp TTCEEEEESCC--TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC-SSCCE
T ss_pred CCCcEEECCCC--CcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC-ccceE
Confidence 45788988665 699999999999999999999975432 1 13699999999999999999999999987 55799
Q ss_pred EEee
Q 024708 134 ISYS 137 (264)
Q Consensus 134 V~fS 137 (264)
|+||
T Consensus 164 v~~A 167 (167)
T 1fxl_A 164 VKFA 167 (167)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9986
No 152
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=4.1e-12 Score=97.02 Aligned_cols=79 Identities=15% Similarity=0.153 Sum_probs=65.5
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcC-CC---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccce
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-NG---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 131 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K-~~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~ 131 (264)
..+++.|+|.+++ +.+|+++|+++|+.||.|.+|+|... .. ...|||+|.+.++|+.|++ ++..|.++ .
T Consensus 12 ~~~~~~l~v~nlp--~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~---~ 84 (103)
T 2cqg_A 12 VQKTSDLIVLGLP--WKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGR---W 84 (103)
T ss_dssp CCCCCCEEEESCC--SSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTE---E
T ss_pred cCCCCEEEEEcCC--CcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCe---E
Confidence 3456789998765 69999999999999999999997543 21 1369999999999999999 57788887 9
Q ss_pred EEEEeeeCCC
Q 024708 132 LHISYSRHTD 141 (264)
Q Consensus 132 LrV~fSK~~~ 141 (264)
|+|+|++...
T Consensus 85 l~v~~a~~~~ 94 (103)
T 2cqg_A 85 CDCKLPNSKQ 94 (103)
T ss_dssp EEEECCCTTC
T ss_pred EEEEecCCCC
Confidence 9999997754
No 153
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.35 E-value=2.5e-12 Score=100.75 Aligned_cols=81 Identities=15% Similarity=0.164 Sum_probs=65.2
Q ss_pred CCCcEEEEEEccCCccc--------CHHHHHHHHhccCCeeEEEEEcCC------CCceEEEEeCCHHHHHHHHHHhcCC
Q 024708 57 PESNVLLASIENMQYAV--------TLDVLHMVFSAFGPVQKIAMFDKN------GGLQALIQYPDVQTAVVAKEALEGH 122 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~V--------T~d~L~~LFs~yG~V~rIkif~K~------~g~~AfVqF~d~e~A~~A~~~LnG~ 122 (264)
.+++||++.|.=....+ .+++|++.|++||.|.+|+|.+.. ....|||+|++.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 57899999865222233 346899999999999999986421 1236999999999999999999999
Q ss_pred eeCCCccceEEEEeeeCC
Q 024708 123 CIYDGGFCKLHISYSRHT 140 (264)
Q Consensus 123 ~I~g~~~c~LrV~fSK~~ 140 (264)
.+.|+ .|+|+|+...
T Consensus 83 ~f~GR---~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANR---VVVTKYCDPD 97 (105)
T ss_dssp EETTE---ECEEEEECHH
T ss_pred EeCCC---EEEEEEeCHH
Confidence 99998 9999998654
No 154
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=1.6e-12 Score=98.88 Aligned_cols=78 Identities=18% Similarity=0.198 Sum_probs=63.0
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCC---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 133 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~Lr 133 (264)
.+++.|+|.+++ +.+|+++|+++|+.|+.|.-+ .++.. ...|||+|++.++|+.|++.|||..|.++ .|+
T Consensus 13 ~~~~~l~V~nLp--~~~t~~~l~~~F~~~~~~~~~--~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---~l~ 85 (102)
T 2fc8_A 13 QPSKTLFVKGLS--EDTTEETLKESFDGSVRARIV--TDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN---KVT 85 (102)
T ss_dssp CCCSSEEEECCC--TTCCHHHHHHTSTTCSEEEEE--ECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE---ECE
T ss_pred CCCCEEEEeCCC--CccCHHHHHHHhcCCeEEEEE--ecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCe---EEE
Confidence 567899999765 699999999999988543322 22211 13699999999999999999999999998 999
Q ss_pred EEeeeCCC
Q 024708 134 ISYSRHTD 141 (264)
Q Consensus 134 V~fSK~~~ 141 (264)
|+|++...
T Consensus 86 V~~a~~~~ 93 (102)
T 2fc8_A 86 LDWAKPKG 93 (102)
T ss_dssp EEECCCCC
T ss_pred EEEecCCC
Confidence 99998754
No 155
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.34 E-value=4e-13 Score=102.32 Aligned_cols=78 Identities=15% Similarity=0.209 Sum_probs=64.4
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEc----CCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD----KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~----K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
.+++.|+|.+++ +.+|+++|+++|+.||.|..+.+.+ +.++ .|||+|++.++|+.|++ |||..|.++ .|
T Consensus 15 ~~~~~l~V~nLp--~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g-~afV~f~~~~~a~~A~~-l~g~~~~g~---~l 87 (101)
T 1fj7_A 15 TTPFNLFIGNLN--PNKSVAELKVAISELFAKNDLAVVDVRTGTNRK-FGYVDFESAEDLEKALE-LTGLKVFGN---EI 87 (101)
T ss_dssp SCSEEEEEECCC--TTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTT-EEEEEESSHHHHHHHHH-GGGCCBTTB---CC
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHHhCCcceEEEecCCCCCcCc-EEEEEECCHHHHHHHHh-cCCcEECCc---EE
Confidence 346789998665 6999999999999999987732322 2334 69999999999999999 999999998 99
Q ss_pred EEEeeeCCC
Q 024708 133 HISYSRHTD 141 (264)
Q Consensus 133 rV~fSK~~~ 141 (264)
+|++++...
T Consensus 88 ~V~~a~~~~ 96 (101)
T 1fj7_A 88 KLEKPKGRD 96 (101)
T ss_dssp EEECCSCCC
T ss_pred EEEEcCCCC
Confidence 999997654
No 156
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.34 E-value=1.8e-12 Score=116.27 Aligned_cols=79 Identities=16% Similarity=0.282 Sum_probs=67.2
Q ss_pred CCCCcEEEEEEccCCccc---------CHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCee--
Q 024708 56 EPESNVLLASIENMQYAV---------TLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCI-- 124 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~V---------T~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I-- 124 (264)
...+++|+|.+++ ..+ |+++|..+|+.||.|++|+|...+ + +|||+|.+.++|+.|++.|||..|
T Consensus 131 ~~~~rtLfVgnL~--~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~k-G-~AFV~F~~~~~Ae~A~~am~g~~l~~ 206 (240)
T 3u1l_A 131 RKKNKTLYVGGID--GALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESK-N-CGFVKFKYQANAEFAKEAMSNQTLLL 206 (240)
T ss_dssp CCCCCEEEEECTT--GGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGG-T-EEEEEESSHHHHHHHHHHHTTCCCCC
T ss_pred ccCCceeecCCCC--hhhhcccccccCcHHHHHHHHHccCCEEEEEEECCC-C-EEEEEeCCHHHHHHHHHHhCCCEEec
Confidence 3567899999776 466 799999999999999999987654 4 699999999999999999999999
Q ss_pred ----------CCCccceEEEEeeeCCC
Q 024708 125 ----------YDGGFCKLHISYSRHTD 141 (264)
Q Consensus 125 ----------~g~~~c~LrV~fSK~~~ 141 (264)
.++ .|+|.||+...
T Consensus 207 ~~~~e~~~~~~gr---~L~V~wA~~~p 230 (240)
T 3u1l_A 207 PSDKEWDDRREGT---GLLVKWANEDP 230 (240)
T ss_dssp TTSTTGGGGGGSC---CCEEEECC---
T ss_pred cccccccccCCCC---EEEEEEccCCC
Confidence 676 89999998653
No 157
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.33 E-value=2.7e-12 Score=106.67 Aligned_cols=80 Identities=18% Similarity=0.229 Sum_probs=68.8
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC-C---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-G---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~-~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
.+++.|+|.+++ +.+|+++|+++|+.||.|.+|++.... . ...|||+|.+.++|+.|++.|||..|.|+ .|
T Consensus 112 ~~~~~l~v~nl~--~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~---~l 186 (198)
T 2yh0_A 112 DSAHKLFIGGLP--NYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDK---KL 186 (198)
T ss_dssp CCCCEEEEECCC--TTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTE---EC
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCE---EE
Confidence 456899999665 599999999999999999999976432 1 13699999999999999999999999988 99
Q ss_pred EEEeeeCCC
Q 024708 133 HISYSRHTD 141 (264)
Q Consensus 133 rV~fSK~~~ 141 (264)
+|+|++...
T Consensus 187 ~v~~a~~~~ 195 (198)
T 2yh0_A 187 LVQRASVGA 195 (198)
T ss_dssp EEEESCCCC
T ss_pred EEEECCCCC
Confidence 999998753
No 158
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=1.8e-12 Score=101.61 Aligned_cols=79 Identities=10% Similarity=0.090 Sum_probs=66.7
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCe-eEEEEEc-C---CCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccce
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPV-QKIAMFD-K---NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 131 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V-~rIkif~-K---~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~ 131 (264)
.+.++|+|.+|+ +.+|+++|.++|+.||.| .+|+|.. + .++ .|||+|++.++|+.|++. ||..|.++ .
T Consensus 13 ~~~~~l~V~nLp--~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G-~afV~F~~~~~a~~Al~~-~~~~~~gr---~ 85 (114)
T 2cpy_A 13 SAKVCAHITNIP--FSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLG-QALVQFKNEDDARKSERL-HRKKLNGR---E 85 (114)
T ss_dssp SCCCEEEEESCC--TTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSS-CEEEECSSHHHHHHHGGG-CSEEETTE---E
T ss_pred CCccEEEEeCcC--CcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcce-EEEEEECCHHHHHHHHHh-CCCccCCe---E
Confidence 456789998665 699999999999999999 8888743 2 234 599999999999999987 99999998 9
Q ss_pred EEEEeeeCCCC
Q 024708 132 LHISYSRHTDL 142 (264)
Q Consensus 132 LrV~fSK~~~l 142 (264)
|+|++++....
T Consensus 86 i~v~~a~~~~~ 96 (114)
T 2cpy_A 86 AFVHVVTLEDM 96 (114)
T ss_dssp EEEEEECHHHH
T ss_pred EEEEECCHHHH
Confidence 99999977654
No 159
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.33 E-value=3.5e-12 Score=103.09 Aligned_cols=78 Identities=18% Similarity=0.206 Sum_probs=66.1
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC-C---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-G---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~-~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
..++.|+|.+++ ..+|+++|+++|+.||.|.+|++...+ . ...|||+|.+.++|..|++.|||..|.++ ...|
T Consensus 87 ~~~~~l~v~nl~--~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~-~~~l 163 (168)
T 1b7f_A 87 IKDTNLYVTNLP--RTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGG-SQPL 163 (168)
T ss_dssp TTTCEEEEESCC--TTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC-SSCC
T ss_pred CCCCCEEEeCCC--CCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCC-CeEE
Confidence 456789998665 699999999999999999999976432 1 13699999999999999999999999884 4489
Q ss_pred EEEee
Q 024708 133 HISYS 137 (264)
Q Consensus 133 rV~fS 137 (264)
+|+||
T Consensus 164 ~V~~A 168 (168)
T 1b7f_A 164 SVRLA 168 (168)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99986
No 160
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=1.5e-12 Score=93.89 Aligned_cols=71 Identities=11% Similarity=0.102 Sum_probs=60.5
Q ss_pred EEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCC----CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEe
Q 024708 61 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG----GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 136 (264)
Q Consensus 61 VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~----g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~f 136 (264)
.|+|.+++ +.+|+++|.++|+.||.|.+|++...+. ...|||+|.+.++|+.|++.++ ..|.|+ .|+|++
T Consensus 2 ~l~v~nlp--~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~---~l~v~~ 75 (77)
T 1uaw_A 2 KMFIGGLS--WQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSK---TIDPKV 75 (77)
T ss_dssp CEEEESCC--SSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSC---CCEEEE
T ss_pred EEEEeCCC--CCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCE---EEEEEe
Confidence 47777654 6999999999999999999999764321 2369999999999999999999 888888 899988
Q ss_pred e
Q 024708 137 S 137 (264)
Q Consensus 137 S 137 (264)
|
T Consensus 76 a 76 (77)
T 1uaw_A 76 A 76 (77)
T ss_dssp C
T ss_pred c
Confidence 6
No 161
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.32 E-value=5.6e-12 Score=102.33 Aligned_cols=78 Identities=17% Similarity=0.298 Sum_probs=65.4
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCC---ceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEE
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGG---LQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 134 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g---~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV 134 (264)
.++.|+|.+++ +.+|+++|+++|+.||.|.+|++.....+ ..|||+|.+.++|..|++.|||..+.++....|+|
T Consensus 94 ~~~~l~v~nl~--~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 94 EDRKLFIGMIS--KKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp GGSEEEEESCC--TTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred CCCeEEEcCCC--CcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 56789998665 68999999999999999999997654322 35999999999999999999999998641148999
Q ss_pred Eee
Q 024708 135 SYS 137 (264)
Q Consensus 135 ~fS 137 (264)
+||
T Consensus 172 ~~a 174 (175)
T 3nmr_A 172 KFA 174 (175)
T ss_dssp EEC
T ss_pred Eec
Confidence 997
No 162
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.32 E-value=3.6e-12 Score=119.75 Aligned_cols=81 Identities=16% Similarity=0.190 Sum_probs=68.8
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCC--ccceEE
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG--GFCKLH 133 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~--~~c~Lr 133 (264)
..+++.|+|.|+++.+.+|+++|.++|++||.|.+|++... ++ .|||+|++.++|++|++.|||..+.+. ....|.
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~-kg-faFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-KP-YSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTT-CS-EEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CC-EEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 46789999999877789999999999999999999988753 45 599999999999999999999999522 023578
Q ss_pred EEeee
Q 024708 134 ISYSR 138 (264)
Q Consensus 134 V~fSK 138 (264)
|+|++
T Consensus 93 ~~~~~ 97 (345)
T 3tht_A 93 LNFVE 97 (345)
T ss_dssp EEECS
T ss_pred EEEee
Confidence 88874
No 163
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.32 E-value=4.9e-12 Score=101.61 Aligned_cols=81 Identities=14% Similarity=0.182 Sum_probs=65.7
Q ss_pred CCCcEEEEEEccCCccc---CHHHHHHHHhccCCeeEEEEEcCCC--------CceEEEEeCCHHHHHHHHHHhcCCeeC
Q 024708 57 PESNVLLASIENMQYAV---TLDVLHMVFSAFGPVQKIAMFDKNG--------GLQALIQYPDVQTAVVAKEALEGHCIY 125 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~V---T~d~L~~LFs~yG~V~rIkif~K~~--------g~~AfVqF~d~e~A~~A~~~LnG~~I~ 125 (264)
++++||+|.|.-....+ .+++|++.|++||.|.+|+|.+.+. ...|||+|++.++|.+|++.|||..+.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 47899999866432233 3688999999999999999864321 136999999999999999999999999
Q ss_pred CCccceEEEEeeeCC
Q 024708 126 DGGFCKLHISYSRHT 140 (264)
Q Consensus 126 g~~~c~LrV~fSK~~ 140 (264)
|+ .|+|+|+...
T Consensus 98 GR---~i~v~~~~~~ 109 (118)
T 3ue2_A 98 GR---KVVAEVYDQE 109 (118)
T ss_dssp TE---ECEEEEECHH
T ss_pred Cc---EEEEEEcChH
Confidence 98 9999998653
No 164
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.32 E-value=3e-12 Score=101.33 Aligned_cols=80 Identities=11% Similarity=0.159 Sum_probs=66.9
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCC---eeEEEEE-cCCC--CceEEEEeCCHHHHHHHHHHhcCCeeCCCccc
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGP---VQKIAMF-DKNG--GLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 130 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~---V~rIkif-~K~~--g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c 130 (264)
...++|+|.+|+ +.+|+++|.++|+.||. |.+|+|. ++.+ ...|||+|++.++|++|++ |||..|.++
T Consensus 15 ~~~~~l~V~nLp--~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr--- 88 (118)
T 2db1_A 15 GEGYVVKLRGLP--WSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHR--- 88 (118)
T ss_dssp CCCCEEEEESCC--TTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTE---
T ss_pred CCCcEEEEeCCC--CCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCe---
Confidence 346789998665 79999999999999999 8999875 3331 1369999999999999999 999999998
Q ss_pred eEEEEeeeCCCC
Q 024708 131 KLHISYSRHTDL 142 (264)
Q Consensus 131 ~LrV~fSK~~~l 142 (264)
.|+|.+|+..+.
T Consensus 89 ~i~V~~a~~~~~ 100 (118)
T 2db1_A 89 YIEVFKSHRTEM 100 (118)
T ss_dssp EEEEEEECHHHH
T ss_pred EEEEEECCHHHH
Confidence 999999976543
No 165
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.31 E-value=3.3e-12 Score=103.90 Aligned_cols=76 Identities=20% Similarity=0.288 Sum_probs=65.7
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC-C---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-G---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~-~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
..++.|+|.+++ ..+|+++|+++|+.||.|.+|++...+ . ...|||+|.+.++|+.|++.|||..|.|+ .|
T Consensus 92 ~~~~~l~v~nlp--~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---~l 166 (172)
T 2g4b_A 92 PGAHKLFIGGLP--NYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDK---KL 166 (172)
T ss_dssp TTTTCEEEECCC--TTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTE---EC
T ss_pred CCCCEEEEEcCC--CcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCe---EE
Confidence 346789998665 599999999999999999999975442 1 13699999999999999999999999998 99
Q ss_pred EEEee
Q 024708 133 HISYS 137 (264)
Q Consensus 133 rV~fS 137 (264)
+|+||
T Consensus 167 ~V~~A 171 (172)
T 2g4b_A 167 LVQRA 171 (172)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99987
No 166
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=7.3e-12 Score=96.59 Aligned_cols=80 Identities=15% Similarity=0.176 Sum_probs=66.4
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeE-EEEE-cCC---CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccce
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK-IAMF-DKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 131 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~r-Ikif-~K~---~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~ 131 (264)
....+|+|.+|+ +.+|+++|.++|+.||.|.+ |+|. ++. ++ .|||+|++.++|+.|++. ||..|.++ .
T Consensus 13 ~~~~~l~V~nLp--~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G-~afV~F~~~~~a~~A~~~-~~~~~~gr---~ 85 (104)
T 1wg5_A 13 ANDGFVRLRGLP--FGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTG-EAFVQFASQEIAEKALKK-HKERIGHR---Y 85 (104)
T ss_dssp SCCCEEEEESCC--TTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCS-EEEEEESSHHHHHHHHTT-TTCCSSSS---C
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHhcCCcceeEEEEECCCCCcce-EEEEEECCHHHHHHHHHh-CcchhCCc---E
Confidence 456789998664 79999999999999999998 7764 221 34 699999999999999998 99999998 8
Q ss_pred EEEEeeeCCCCc
Q 024708 132 LHISYSRHTDLS 143 (264)
Q Consensus 132 LrV~fSK~~~l~ 143 (264)
|+|.+++...+.
T Consensus 86 i~v~~~~~~~~~ 97 (104)
T 1wg5_A 86 IEIFKSSRAEVR 97 (104)
T ss_dssp CEEEEECTTTSC
T ss_pred EEEEECCHHHHH
Confidence 999998766543
No 167
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=1.9e-12 Score=102.64 Aligned_cols=79 Identities=4% Similarity=-0.047 Sum_probs=65.2
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEE-EEEcCCC---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKI-AMFDKNG---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rI-kif~K~~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
....+|+|.+|+ +.+|+++|.++|+.||.|.++ .+..+.. ...|||+|++.++|+.|++ |||..|.++ .|
T Consensus 23 ~~~~~l~V~nLp--~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr---~i 96 (124)
T 1wel_A 23 EAGFCVYLKGLP--FEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNR---FI 96 (124)
T ss_dssp CCCCEEEEECCC--TTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTS---CB
T ss_pred CCCcEEEEeCCC--CCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCc---EE
Confidence 345789998665 699999999999999999874 3433221 1369999999999999999 999999998 99
Q ss_pred EEEeeeCCC
Q 024708 133 HISYSRHTD 141 (264)
Q Consensus 133 rV~fSK~~~ 141 (264)
+|++++...
T Consensus 97 ~V~~a~~~~ 105 (124)
T 1wel_A 97 QVHPITKKG 105 (124)
T ss_dssp EEEEECHHH
T ss_pred EEEECCHHH
Confidence 999997654
No 168
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=1.8e-12 Score=96.48 Aligned_cols=77 Identities=22% Similarity=0.190 Sum_probs=61.0
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEe
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 136 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~f 136 (264)
.+++.|+|.+++ +.+|+++|.++|+.||.|.+|+|..+.++ .|||+|++.++|+. +++..+... -..|+|++
T Consensus 3 ~~~~~l~V~nLp--~~~te~~l~~~F~~~G~i~~v~i~~~~~g-~afV~f~~~~~a~~----~~~~~~~~~-g~~l~v~~ 74 (88)
T 1wf0_A 3 SGSSGVFVGRCT--GDMTEDELREFFSQYGDVMDVFIPKPFRA-FAFVTFADDQIAQS----LCGEDLIIK-GISVHISN 74 (88)
T ss_dssp SCCCEEEEESCC--SSSCHHHHHHHSTTTSCCCEEECCSSCCS-CCEEECSCHHHHHH----TTTCEEEET-TEEEEEEC
T ss_pred CCCcEEEEeCCC--CCCCHHHHHHHHHHcCCeeEEEEecCCCC-EEEEEECCHHHHHH----HhcCCceeC-CEEEEEEe
Confidence 356899998665 69999999999999999999998766555 59999999999974 466655322 13889998
Q ss_pred eeCCC
Q 024708 137 SRHTD 141 (264)
Q Consensus 137 SK~~~ 141 (264)
++...
T Consensus 75 a~~~~ 79 (88)
T 1wf0_A 75 AEPKH 79 (88)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 87654
No 169
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.30 E-value=5.5e-12 Score=121.24 Aligned_cols=80 Identities=23% Similarity=0.350 Sum_probs=68.9
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcC-----CCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccce
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 131 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K-----~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~ 131 (264)
.++++|||.||+ +.||+++|..+|+.||.|+.|+|+.. .++ +|||+|.+.++|+.||+.|||..|.+. .
T Consensus 100 ~~~~~lfV~nL~--~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG-~aFV~F~~~e~A~~Ai~~lng~~i~gr---~ 173 (437)
T 3pgw_S 100 DAFKTLFVARVN--YDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRG-YAFIEYEHERDMHSAYKHADGKKIDGR---R 173 (437)
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccc-eEEEeeccHHHHHHHHHHcCCCEECCE---E
Confidence 456799999775 69999999999999999999997532 133 699999999999999999999999998 9
Q ss_pred EEEEeeeCCCC
Q 024708 132 LHISYSRHTDL 142 (264)
Q Consensus 132 LrV~fSK~~~l 142 (264)
|+|+|++....
T Consensus 174 i~V~~a~~~~~ 184 (437)
T 3pgw_S 174 VLVDVERGRTV 184 (437)
T ss_pred EEEEEeCCCCC
Confidence 99999986543
No 170
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.30 E-value=4.9e-12 Score=93.23 Aligned_cols=71 Identities=20% Similarity=0.315 Sum_probs=62.2
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhcc----C-------CeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeC
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAF----G-------PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 125 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~y----G-------~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~ 125 (264)
.+++.|+|.+++ +.+|+++|.++|+.| | .|.+|++...+ + .|||+|.+.++|+.|+ .|||..|.
T Consensus 4 ~~~~~l~V~nLp--~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~k-g-~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 4 GSARRLYVGNIP--FGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK-N-FAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGGGEEEEESCC--TTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSS-S-EEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCC-c-EEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 346789998665 699999999999999 8 99999987543 4 6999999999999999 99999999
Q ss_pred CCccceEEEE
Q 024708 126 DGGFCKLHIS 135 (264)
Q Consensus 126 g~~~c~LrV~ 135 (264)
|+ .|+|+
T Consensus 79 g~---~l~V~ 85 (87)
T 2hzc_A 79 GQ---SLKIR 85 (87)
T ss_dssp TE---ECEEE
T ss_pred Ce---EEEEe
Confidence 98 78876
No 171
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.30 E-value=3.2e-12 Score=112.68 Aligned_cols=81 Identities=15% Similarity=0.117 Sum_probs=67.3
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccC--CeeEEEEEc-CCCC---ceEEEEeCCHHHHHHHHHHhcCCeeCCCccce
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFG--PVQKIAMFD-KNGG---LQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 131 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG--~V~rIkif~-K~~g---~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~ 131 (264)
....|+|.||+ +.+|+++|+++|+.|| .|++|+|.. +..+ ..|||+|++.++|++||+.|||..|.++ .
T Consensus 67 ~~~~lfVgnL~--~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr---~ 141 (229)
T 3q2s_C 67 KRIALYIGNLT--WWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ---N 141 (229)
T ss_dssp --CEEEEESCC--TTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTB---C
T ss_pred CccEEEEeCCC--CCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCE---E
Confidence 45678888665 6999999999999999 999999753 2211 3699999999999999999999999998 9
Q ss_pred EEEEeeeCCCCc
Q 024708 132 LHISYSRHTDLS 143 (264)
Q Consensus 132 LrV~fSK~~~l~ 143 (264)
|+|+|++...+.
T Consensus 142 l~V~~a~~~~~~ 153 (229)
T 3q2s_C 142 PVVTPVNKQFLS 153 (229)
T ss_dssp CEEEECCHHHHH
T ss_pred eEEEECCCCccc
Confidence 999999876543
No 172
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.29 E-value=1.1e-11 Score=106.21 Aligned_cols=80 Identities=19% Similarity=0.115 Sum_probs=67.3
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEc-CCC---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD-KNG---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~-K~~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
.++++|+|.+|+ +.+|+++|+++|+.||.|.+|+|.. +.. ...|||+|.+.++|+.|++.|||..+.++ .|
T Consensus 13 ~p~~tlfVgnLp--~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~---~i 87 (213)
T 4f02_A 13 YPMASLYVGDLH--PDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGK---PV 87 (213)
T ss_dssp --CCEEEEESCC--TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE---EC
T ss_pred CCCcEEEEeCCC--CCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCc---cc
Confidence 456789999765 6999999999999999999999754 221 13699999999999999999999999998 89
Q ss_pred EEEeeeCCC
Q 024708 133 HISYSRHTD 141 (264)
Q Consensus 133 rV~fSK~~~ 141 (264)
++.+++...
T Consensus 88 ~~~~~~~~~ 96 (213)
T 4f02_A 88 RIMWSQRDP 96 (213)
T ss_dssp EEEECCCCT
T ss_pred ccccccccc
Confidence 999887654
No 173
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.95 E-value=2.7e-13 Score=106.07 Aligned_cols=79 Identities=16% Similarity=0.352 Sum_probs=67.6
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeE--------EEEEcC-C----CCceEEEEeCCHHHHHHHHHHhcCCe
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQK--------IAMFDK-N----GGLQALIQYPDVQTAVVAKEALEGHC 123 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~r--------Ikif~K-~----~g~~AfVqF~d~e~A~~A~~~LnG~~ 123 (264)
.+++.|+|.+++ +.+|+++|.++|+.||.|.+ |+|... . ++ .|||+|.+.++|+.|++.|||..
T Consensus 5 ~~~~~l~V~nLp--~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g-~afV~f~~~~~A~~Ai~~l~g~~ 81 (116)
T 2lcw_A 5 SDNNTIFVQGLG--ENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKG-EATVSFDDPPSAKAAIDWFDGKE 81 (116)
Confidence 457789998775 68999999999999999998 776432 1 23 69999999999999999999999
Q ss_pred eCCCccceEEEEeeeCCC
Q 024708 124 IYDGGFCKLHISYSRHTD 141 (264)
Q Consensus 124 I~g~~~c~LrV~fSK~~~ 141 (264)
|.++ .|+|+|++...
T Consensus 82 ~~g~---~l~V~~a~~~~ 96 (116)
T 2lcw_A 82 FSGN---PIKVSFATRRA 96 (116)
Confidence 9998 99999987654
No 174
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.3e-11 Score=96.57 Aligned_cols=65 Identities=25% Similarity=0.394 Sum_probs=56.2
Q ss_pred cccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEeeeCCC
Q 024708 71 YAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYSRHTD 141 (264)
Q Consensus 71 ~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~fSK~~~ 141 (264)
..+|+++|+++|++||.|.+|+|..+.+| +|||+|++.++|+.|++.+++ +.++ .|+|+|++...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rG-faFVeF~~~~~A~~Ai~~~~~--~~g~---~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPG-TAVVEFATVKAAELAVQNEVG--LVDN---PLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSS-EEEEEESCHHHHHHHHHTCCB--CSSS---BCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCC-EEEEEECCHHHHHHHHHhcCC--CCCC---eEEEEEccCCC
Confidence 36999999999999999999998866655 599999999999999998665 5677 89999987654
No 175
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.27 E-value=1.1e-11 Score=104.19 Aligned_cols=79 Identities=16% Similarity=0.241 Sum_probs=66.1
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC----CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEE
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 133 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~----~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~Lr 133 (264)
.++.|+|.+++ ..+|+++|+++|+.||.|.+|++.... ...+|||+|.+.++|+.|++.|||..|.++ .|+
T Consensus 27 ~~~~l~V~nLp--~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~---~l~ 101 (216)
T 2qfj_A 27 IMSRVYVGSIY--YELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGR---NIK 101 (216)
T ss_dssp HHTEEEEECCC--TTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-C---CCE
T ss_pred cCCEEEEECCC--CCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCe---eEE
Confidence 46789999765 589999999999999999999985321 123699999999999999999999999998 899
Q ss_pred EEeeeCCC
Q 024708 134 ISYSRHTD 141 (264)
Q Consensus 134 V~fSK~~~ 141 (264)
|.+++...
T Consensus 102 v~~~~~~~ 109 (216)
T 2qfj_A 102 VGRPSNIG 109 (216)
T ss_dssp EECCSCCG
T ss_pred EecCCCcc
Confidence 98876543
No 176
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=8.7e-12 Score=96.59 Aligned_cols=78 Identities=13% Similarity=0.161 Sum_probs=63.1
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEE-cCCC--CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF-DKNG--GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 133 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif-~K~~--g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~Lr 133 (264)
...++|+|.+|+ +.+|+++|.++|+.||. ++|+|. ++++ ...|||+|++.++|++|++ +|+..|.++ .|+
T Consensus 13 ~~~~~l~V~nLp--~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr---~i~ 85 (102)
T 1wez_A 13 TTGHCVHMRGLP--YRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHR---YVE 85 (102)
T ss_dssp SSSCEEEEESCC--TTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSS---CCE
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCc---EEE
Confidence 445789998654 79999999999999994 588864 4321 1369999999999999995 899999998 889
Q ss_pred EEeeeCCC
Q 024708 134 ISYSRHTD 141 (264)
Q Consensus 134 V~fSK~~~ 141 (264)
|..+....
T Consensus 86 V~~~~~~~ 93 (102)
T 1wez_A 86 LFLNSTAG 93 (102)
T ss_dssp EEEECCCC
T ss_pred EEECCCCC
Confidence 98876543
No 177
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.26 E-value=8.8e-12 Score=102.05 Aligned_cols=78 Identities=22% Similarity=0.243 Sum_probs=65.1
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEe
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 136 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~f 136 (264)
..++.|+|.+++ +.+|+++|+++|+.||.|..+..-.+.++ .|||+|.+.++|..|++.|||..|.|+ .|+|+|
T Consensus 97 ~~~~~l~v~nlp--~~~t~~~l~~~F~~~g~v~~~~~~~~~~g-~afV~f~~~~~A~~A~~~l~g~~~~g~---~i~v~~ 170 (175)
T 1fje_B 97 RAARTLLAKNLS--FNITEDELKEVFEDALEIRLVSQDGKSKG-IAYIEFKSEADAEKNLEEKQGAEIDGR---SVSLYY 170 (175)
T ss_dssp GGGGEEEEESCC--SSCCHHHHHHHCTTCSEEEEECSSSSCCS-EEEEECSSHHHHHHHHHHHTEEEETTE---EEEEEE
T ss_pred ccCCEEEEeCCC--CCCCHHHHHHHHHhcCeEEEecCCCCCce-EEEEEECCHHHHHHHHHHhCCCEECCe---EEEEEe
Confidence 356799998665 68999999999999999987711112234 699999999999999999999999998 999999
Q ss_pred eeCC
Q 024708 137 SRHT 140 (264)
Q Consensus 137 SK~~ 140 (264)
|+.+
T Consensus 171 a~~k 174 (175)
T 1fje_B 171 TGEK 174 (175)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 9764
No 178
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.26 E-value=1.2e-11 Score=99.98 Aligned_cols=77 Identities=10% Similarity=0.083 Sum_probs=66.3
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC----CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEE
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 133 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~----~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~Lr 133 (264)
.++.|+|.+++ +.+|+++|+++|+.||.|.+|++...+ ....|||+|.+.++|++|++ |+|..|.|+ .|+
T Consensus 86 ~~~~l~V~nlp--~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~---~i~ 159 (167)
T 2cjk_A 86 KTGKIFVGGIG--PDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDR---KIE 159 (167)
T ss_dssp HCEEEEEEEEC--TTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSS---CEE
T ss_pred CCCeEEECCCC--CCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCe---EEE
Confidence 45689999876 599999999999999999999975432 12369999999999999998 899999998 999
Q ss_pred EEeeeCC
Q 024708 134 ISYSRHT 140 (264)
Q Consensus 134 V~fSK~~ 140 (264)
|+||+.+
T Consensus 160 V~~a~pk 166 (167)
T 2cjk_A 160 IKRAEPR 166 (167)
T ss_dssp EEECCCC
T ss_pred EeecCCC
Confidence 9999764
No 179
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.26 E-value=8.4e-12 Score=102.42 Aligned_cols=79 Identities=10% Similarity=0.118 Sum_probs=66.3
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCC---eeEEEEE-cCCC--CceEEEEeCCHHHHHHHHHHhcCCeeCCCccc
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGP---VQKIAMF-DKNG--GLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 130 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~---V~rIkif-~K~~--g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c 130 (264)
....+|+|.+|+ +.+|+++|.++|+.||. |.+|+|. ++.+ ...|||+|++.++|++|++ |||..|.++
T Consensus 42 ~~~~~lfVgnLp--~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr--- 115 (136)
T 2hgl_A 42 GEGFVVKLRGLP--WSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHR--- 115 (136)
T ss_dssp CTTCEEEEESCC--TTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSS---
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCE---
Confidence 456789998665 79999999999999999 8889864 3331 1369999999999999999 999999998
Q ss_pred eEEEEeeeCCC
Q 024708 131 KLHISYSRHTD 141 (264)
Q Consensus 131 ~LrV~fSK~~~ 141 (264)
.|+|.+|+..+
T Consensus 116 ~i~V~~a~~~e 126 (136)
T 2hgl_A 116 YIEVFKSHRTE 126 (136)
T ss_dssp EEEEEECCHHH
T ss_pred EEEEEECChHH
Confidence 99999986554
No 180
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.25 E-value=2.2e-11 Score=98.76 Aligned_cols=82 Identities=12% Similarity=0.179 Sum_probs=65.9
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC-C-----CceEEEEeCCHHHHHHHHHHhcCCeeCCCccce
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-G-----GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 131 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~-~-----g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~ 131 (264)
.++.|+|.+++ +.+|+++|+++|+.||.|.+|++.... . ...|||+|.+.++|+.|++.|||..+.++....
T Consensus 2 ~~~~l~V~nLp--~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~ 79 (175)
T 3nmr_A 2 DAIKMFVGQVP--RTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHP 79 (175)
T ss_dssp CCEEEEEESCC--TTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CceEEEEeCCC--CCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccc
Confidence 46789999765 689999999999999999999975322 1 136999999999999999999999987542347
Q ss_pred EEEEeeeCCC
Q 024708 132 LHISYSRHTD 141 (264)
Q Consensus 132 LrV~fSK~~~ 141 (264)
+++.+++...
T Consensus 80 ~~~~~~~~~~ 89 (175)
T 3nmr_A 80 IQMKPADSEK 89 (175)
T ss_dssp CEEEECGGGC
T ss_pred eEEccccccc
Confidence 7888776543
No 181
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.24 E-value=1.5e-11 Score=98.37 Aligned_cols=81 Identities=16% Similarity=0.151 Sum_probs=64.7
Q ss_pred CCCcEEEEEEccCCcc--------cCHHHHHHHHhccCCeeEEEEEcCC-CCceEEEEeCCHHHHHHHHHHhcCCeeCCC
Q 024708 57 PESNVLLASIENMQYA--------VTLDVLHMVFSAFGPVQKIAMFDKN-GGLQALIQYPDVQTAVVAKEALEGHCIYDG 127 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~--------VT~d~L~~LFs~yG~V~rIkif~K~-~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~ 127 (264)
.+++||.+.|.=.... -.+++|++.|++||.|.+|+|.+.. +| .|||+|++.++|++|++.|||..+.|+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G-~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQG-NVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTC-CEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcE-EEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 4678888875432222 1235789999999999999986543 34 599999999999999999999999998
Q ss_pred ccceEEEEeeeCCC
Q 024708 128 GFCKLHISYSRHTD 141 (264)
Q Consensus 128 ~~c~LrV~fSK~~~ 141 (264)
.|+|+|+....
T Consensus 84 ---~i~v~~~~~~~ 94 (114)
T 3s6e_A 84 ---MITAAYVPLPT 94 (114)
T ss_dssp ---ECEEEEECHHH
T ss_pred ---EEEEEEEcHHH
Confidence 99999986554
No 182
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.24 E-value=2.8e-11 Score=107.03 Aligned_cols=78 Identities=18% Similarity=0.290 Sum_probs=69.0
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEe
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 136 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~f 136 (264)
..++.|+|.+++ +.+|+++|+++|+.||.|.+|++.+.+ + .|||+|.+.++|..|+..|||..|.++ .|+|.|
T Consensus 20 ~~~~~l~V~nLp--~~~te~~l~~~F~~~G~i~~v~i~~~k-g-~afV~f~~~~~A~~A~~~l~g~~i~g~---~l~v~~ 92 (261)
T 3sde_A 20 TQRCRLFVGNLP--TDITEEDFKRLFERYGEPSEVFINRDR-G-FGFIRLESRTLAEIAKAELDGTILKSR---PLRIRF 92 (261)
T ss_dssp CGGGEEEEESCC--TTCCHHHHHHHTGGGCCCSEEEEETTT-T-EEEEECSSHHHHHHHHHHHTTCEETTE---ECEEEE
T ss_pred CCCCEEEEECCC--CCCCHHHHHHHHHhcCCEEEEEEeCCC-c-EEEEEECCHHHHHHHHHHcCCcEECCc---eeEeee
Confidence 456799999765 699999999999999999999987543 4 699999999999999999999999998 999999
Q ss_pred eeCCC
Q 024708 137 SRHTD 141 (264)
Q Consensus 137 SK~~~ 141 (264)
++...
T Consensus 93 a~~~~ 97 (261)
T 3sde_A 93 ATHGA 97 (261)
T ss_dssp CCCSS
T ss_pred cccCC
Confidence 97653
No 183
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.23 E-value=1.6e-11 Score=93.57 Aligned_cols=76 Identities=9% Similarity=0.121 Sum_probs=64.3
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCC---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEE
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 134 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV 134 (264)
.++.|+|.+++ +.+|+++|.++|+.||.|.+|++...+. ...|||+|++.++|+.|++ +|..|.|+ .|+|
T Consensus 8 ~~~~l~V~nLp--~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~---~l~v 80 (102)
T 2xs2_A 8 MPNTVFVGGID--VRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGK---KLKL 80 (102)
T ss_dssp EEEEEEEECCC--TTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTE---ECEE
T ss_pred CCCEEEEeCCC--CCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCE---EEEE
Confidence 45789998765 6999999999999999999999754321 1369999999999999999 99999998 8999
Q ss_pred EeeeCC
Q 024708 135 SYSRHT 140 (264)
Q Consensus 135 ~fSK~~ 140 (264)
.++...
T Consensus 81 ~~a~~~ 86 (102)
T 2xs2_A 81 GPAIRK 86 (102)
T ss_dssp EEEEEC
T ss_pred EECCcC
Confidence 888653
No 184
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.22 E-value=6.7e-12 Score=97.28 Aligned_cols=78 Identities=17% Similarity=0.128 Sum_probs=65.7
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCC---eeEEEEEc-CC---CCceEEEEeCCHHHHHHHHHHhcCCeeCCCcc
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGP---VQKIAMFD-KN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGF 129 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~---V~rIkif~-K~---~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~ 129 (264)
....+|+|.+++ +.+|+++|.++|+.||. |.+|+|.. +. +| .|||+|++.++|+.|++ |||..|.++
T Consensus 9 ~~~~~l~V~nLp--~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G-~afV~F~~~~~a~~Al~-~~~~~~~gr-- 82 (107)
T 2lmi_A 9 DDVFLIRAQGLP--WSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRG-DALIEMESEQDVQKALE-KHRMYMGQR-- 82 (107)
T ss_dssp SSCCEEEEECCC--SSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCS-EEEEEBSSHHHHHHHHT-TTTCCSSSS--
T ss_pred CCccEEEEeCCC--CCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEee-EEEEEECCHHHHHHHHH-hCcceeCCe--
Confidence 346789998665 79999999999999998 89998753 22 23 69999999999999999 999999988
Q ss_pred ceEEEEeeeCCC
Q 024708 130 CKLHISYSRHTD 141 (264)
Q Consensus 130 c~LrV~fSK~~~ 141 (264)
.|+|.+++...
T Consensus 83 -~i~V~~a~~~~ 93 (107)
T 2lmi_A 83 -YVEVYEINNED 93 (107)
T ss_dssp -CCCCEECCHHH
T ss_pred -EEEEEECCHHH
Confidence 89999887654
No 185
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.22 E-value=3.1e-11 Score=107.05 Aligned_cols=78 Identities=14% Similarity=0.227 Sum_probs=67.7
Q ss_pred CCCcEEEEEEccCCcc-cCHHHHHHHHhccCCeeEEEEEcCCC-----CceEEEEeCCHHHHHHHHHHhcCCeeCCCccc
Q 024708 57 PESNVLLASIENMQYA-VTLDVLHMVFSAFGPVQKIAMFDKNG-----GLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 130 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~-VT~d~L~~LFs~yG~V~rIkif~K~~-----g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c 130 (264)
..+++|+|.+++ +. +|+++|+++|+.||.|.+|++..... ...|||+|.+.++|..|+ .|||..|.|+
T Consensus 208 ~~~~~l~v~nlp--~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~--- 281 (292)
T 2ghp_A 208 LEGREIMIRNLS--TELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNR--- 281 (292)
T ss_dssp CTTTEEEEEEEC--TTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTE---
T ss_pred CCCceEEEECCC--cccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCc---
Confidence 356899999876 58 99999999999999999999864321 246999999999999999 9999999998
Q ss_pred eEEEEeeeCC
Q 024708 131 KLHISYSRHT 140 (264)
Q Consensus 131 ~LrV~fSK~~ 140 (264)
.|+|+|++..
T Consensus 282 ~i~V~~a~~k 291 (292)
T 2ghp_A 282 EISVSLADKK 291 (292)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEEecCC
Confidence 9999999864
No 186
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.22 E-value=7.9e-12 Score=89.84 Aligned_cols=69 Identities=16% Similarity=0.185 Sum_probs=57.7
Q ss_pred EEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcC-----CCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEe
Q 024708 62 LLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-----NGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 136 (264)
Q Consensus 62 L~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K-----~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~f 136 (264)
|+|.++ ++.+|+++|+++|+.||.|.+|++... .++ .|||+|++.++|+.|++. +|..|.|+ .|+|.+
T Consensus 2 l~v~nL--p~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g-~afV~f~~~~~a~~Ai~~-~~~~~~g~---~l~v~~ 74 (75)
T 1iqt_A 2 IFVGGL--SPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRG-FCFITFKEEEPVKKIMEK-KYHNVGLS---KCEIKV 74 (75)
T ss_dssp EEESCC--CSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCC-CEEEECSSSHHHHHHHTT-SSCCBTTB---CCCEEE
T ss_pred EEEeCC--CCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCC-EEEEEECCHHHHHHHHHh-CCCeECCE---EEEEEE
Confidence 666655 469999999999999999999987532 133 699999999999999995 99999998 788876
Q ss_pred e
Q 024708 137 S 137 (264)
Q Consensus 137 S 137 (264)
|
T Consensus 75 a 75 (75)
T 1iqt_A 75 A 75 (75)
T ss_dssp C
T ss_pred C
Confidence 4
No 187
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.21 E-value=2.1e-11 Score=95.28 Aligned_cols=57 Identities=16% Similarity=0.244 Sum_probs=48.0
Q ss_pred HHHHH-hccCCeeEEEEEcCCC---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEee
Q 024708 78 LHMVF-SAFGPVQKIAMFDKNG---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISYS 137 (264)
Q Consensus 78 L~~LF-s~yG~V~rIkif~K~~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~fS 137 (264)
|+..| ++||.|.+|+|.+.+. .+.|||+|++.++|++|++.|||..+.|+ .|+|+||
T Consensus 43 l~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr---~i~v~~s 103 (104)
T 1jmt_A 43 VFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQ---PIHAELS 103 (104)
T ss_dssp HHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTE---ECCEEEC
T ss_pred HHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCE---EEEEEEc
Confidence 33444 9999999999865321 23699999999999999999999999998 9999987
No 188
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=3.7e-11 Score=94.04 Aligned_cols=73 Identities=14% Similarity=0.097 Sum_probs=57.2
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEE-c-------CCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCc
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF-D-------KNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 128 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif-~-------K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~ 128 (264)
..++.|+|.+++ +.+|+++|+++|+.||.|. +++. + +.++ .|||+|++.++|+.|++.|++ +.|+
T Consensus 6 ~~~~~lfVgnLp--~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G-~aFV~f~~~~~a~~Ai~~~~~--~~G~- 78 (114)
T 2dnl_A 6 SGSRKVFVGGLP--PDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKG-YAFLLFQEESSVQALIDACLE--EDGK- 78 (114)
T ss_dssp SCCCCEEEECCC--TTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTS-EEEECCSSHHHHHHHHHHSEE--ETTE-
T ss_pred CCCCEEEEcCCC--CCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCccc-EEEEEECCHHHHHHHHHhhhh--cCCc-
Confidence 456789999765 6999999999999999999 6653 2 2234 699999999999999999953 5555
Q ss_pred cceEEEEeee
Q 024708 129 FCKLHISYSR 138 (264)
Q Consensus 129 ~c~LrV~fSK 138 (264)
.|.+..++
T Consensus 79 --~~~~~~~~ 86 (114)
T 2dnl_A 79 --LYLCVSSP 86 (114)
T ss_dssp --EEEEECCS
T ss_pred --EEEeccCC
Confidence 66666554
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.20 E-value=4.3e-11 Score=105.74 Aligned_cols=81 Identities=16% Similarity=0.116 Sum_probs=69.0
Q ss_pred CCCcEEEEEEccCCccc-CHHHHHHHHhccCCeeEEEEEcCCC---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 57 PESNVLLASIENMQYAV-TLDVLHMVFSAFGPVQKIAMFDKNG---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~V-T~d~L~~LFs~yG~V~rIkif~K~~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
..+++|+|.+++ +.+ |+++|.++|+.||.|.+|++..... ...|||+|.+.++|..|++.|||..|.|+ .|
T Consensus 182 ~~~~~l~v~nlp--~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~---~l 256 (284)
T 3smz_A 182 LHSRCLCVDRLP--PGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGS---HL 256 (284)
T ss_dssp TSCSEEEEECCC--TTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTE---EC
T ss_pred CCccEEEEecCC--cccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCe---EE
Confidence 456789998775 575 9999999999999999999765321 13699999999999999999999999887 99
Q ss_pred EEEeeeCCCC
Q 024708 133 HISYSRHTDL 142 (264)
Q Consensus 133 rV~fSK~~~l 142 (264)
+|+|++....
T Consensus 257 ~v~~a~~~~~ 266 (284)
T 3smz_A 257 RVSFCAPGPP 266 (284)
T ss_dssp EEEECCSSSC
T ss_pred EEEEecCCCc
Confidence 9999987654
No 190
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.18 E-value=5.4e-11 Score=98.61 Aligned_cols=79 Identities=9% Similarity=0.087 Sum_probs=64.1
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC-C---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEE
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-G---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 133 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~-~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~Lr 133 (264)
..+.|+|.+++ +.+|+++|+++|+.||.|.+|++.... . ...|||+|.+.++|..|++. +|..|.|+ .|+
T Consensus 103 ~~~~l~V~nLp--~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~---~i~ 176 (196)
T 1l3k_A 103 TVKKIFVGGIK--EDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGH---NCE 176 (196)
T ss_dssp CCSEEEEECCT--TTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTE---ECE
T ss_pred CcceEEEeCCC--CCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCE---EEE
Confidence 45789998765 689999999999999999999976432 1 13699999999999999987 89999998 899
Q ss_pred EEeeeCCCC
Q 024708 134 ISYSRHTDL 142 (264)
Q Consensus 134 V~fSK~~~l 142 (264)
|.|++...-
T Consensus 177 v~~a~~k~~ 185 (196)
T 1l3k_A 177 VRKALSKQE 185 (196)
T ss_dssp EEECC----
T ss_pred EEecCChhH
Confidence 999877653
No 191
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.18 E-value=7.2e-11 Score=97.84 Aligned_cols=79 Identities=14% Similarity=0.168 Sum_probs=65.4
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcC-CC---CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDK-NG---GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K-~~---g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
..++.|+|.+++ +.+|+++|+++|+.||.|.+|++... .. ...|||+|.+.++|+.|++. +|..|.++ .|
T Consensus 11 ~~~~~l~V~nLp--~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~---~l 84 (196)
T 1l3k_A 11 EQLRKLFIGGLS--FETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGR---VV 84 (196)
T ss_dssp GGGGEEEEESCC--TTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTE---EC
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCE---Ee
Confidence 356799999765 69999999999999999999997543 21 13699999999999999976 99999998 89
Q ss_pred EEEeeeCCC
Q 024708 133 HISYSRHTD 141 (264)
Q Consensus 133 rV~fSK~~~ 141 (264)
+|.+++...
T Consensus 85 ~v~~~~~~~ 93 (196)
T 1l3k_A 85 EPKRAVSRE 93 (196)
T ss_dssp EEEECCC--
T ss_pred eeecccCcc
Confidence 999987653
No 192
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.15 E-value=1e-10 Score=103.70 Aligned_cols=83 Identities=14% Similarity=0.115 Sum_probs=69.6
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC--CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN--GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 134 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~--~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV 134 (264)
.+++.|+|.+++ +.+|+++|+++|+.||.|.+|+|.... ....|||+|.+.++|+.|++ |||..|.++ .|+|
T Consensus 39 ~~~~~l~V~nLp--~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~---~i~v 112 (292)
T 2ghp_A 39 RELTTVLVKNLP--KSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQN---EIIV 112 (292)
T ss_dssp ---CEEEEEEEC--TTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTE---ECEE
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCc---EEEE
Confidence 567899999886 599999999999999999999986532 12479999999999999995 999999998 8999
Q ss_pred EeeeCCCCcee
Q 024708 135 SYSRHTDLSIK 145 (264)
Q Consensus 135 ~fSK~~~l~vk 145 (264)
.+++...|-|.
T Consensus 113 ~~~~~~~l~v~ 123 (292)
T 2ghp_A 113 SHLTECTLWMT 123 (292)
T ss_dssp EECCSCEEEEE
T ss_pred EECCCCEEEEE
Confidence 99987777664
No 193
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=1.1e-10 Score=92.27 Aligned_cols=74 Identities=9% Similarity=0.130 Sum_probs=62.4
Q ss_pred CcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEc-CC---CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEE
Q 024708 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFD-KN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 134 (264)
Q Consensus 59 s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~-K~---~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV 134 (264)
..+|+|.+|+ +.+|+++|.++|+.| .|.+|+|.. +. +| .|||+|++.++|++|+ .|||..|.++ .|+|
T Consensus 16 ~~~v~V~nLp--~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G-~afV~F~~~~~a~~Al-~~~~~~~~gr---~i~V 87 (109)
T 2dnn_A 16 DLYVSVHGMP--FSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNG-NGLVKFLSPQDTFEAL-KRNRMLMIQR---YVEV 87 (109)
T ss_dssp HHEEEEECCC--SSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCS-EEEEECSSHHHHHHHH-HTTTEEETTE---EEEE
T ss_pred CCEEEEeCCC--CCCCHHHHHHHhccC-CeeEEEEEECCCCCCCe-EEEEEECCHHHHHHHH-hcCCCeECCe---EEEE
Confidence 4689988665 799999999999999 899999753 22 34 5999999999999999 6999999998 8999
Q ss_pred EeeeCC
Q 024708 135 SYSRHT 140 (264)
Q Consensus 135 ~fSK~~ 140 (264)
..++..
T Consensus 88 ~~a~~~ 93 (109)
T 2dnn_A 88 SPATER 93 (109)
T ss_dssp EECCHH
T ss_pred EECCcc
Confidence 877543
No 194
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.15 E-value=9.1e-11 Score=95.29 Aligned_cols=75 Identities=19% Similarity=0.295 Sum_probs=64.8
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhcc----C-------CeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCC
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAF----G-------PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 126 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~y----G-------~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g 126 (264)
+++.|+|.+++ +.+|+++|+++|+.| | .|.++++...+ + .|||+|.+.++|+.|+ .|||..|.|
T Consensus 3 ~~~~l~V~nLp--~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~-g-~afV~f~~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 3 SARRLYVGNIP--FGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK-N-FAFLEFRSVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp GGGEEEEESCC--TTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTT-T-EEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred cccEEEEcCCC--cccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCC-C-EEEEEeCCHHHHHHHH-HhCCcEecC
Confidence 46789999765 699999999999999 7 78888876544 4 6999999999999999 899999999
Q ss_pred CccceEEEEeeeCC
Q 024708 127 GGFCKLHISYSRHT 140 (264)
Q Consensus 127 ~~~c~LrV~fSK~~ 140 (264)
+ .|+|.+++..
T Consensus 78 ~---~i~v~~~~~~ 88 (172)
T 2g4b_A 78 Q---SLKIRRPHDY 88 (172)
T ss_dssp E---ECEEECCSSC
T ss_pred c---eeeecCCccc
Confidence 8 8999987654
No 195
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.14 E-value=9.2e-11 Score=97.35 Aligned_cols=76 Identities=18% Similarity=0.285 Sum_probs=64.6
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhcc----C-------CeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCC
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAF----G-------PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 126 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~y----G-------~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g 126 (264)
.++.|+|.+++ +.+|+++|+++|+.| | .|.++++...+ + +|||+|.+.++|+.|+ .|||..|.|
T Consensus 3 ~~~~l~V~nLp--~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~-g-~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 3 MARRLYVGNIP--FGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK-N-FAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp -CCEEEEESCC--TTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTT-T-EEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred ceeEEEEcCCC--CCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCC-C-EEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 46889999765 599999999999999 5 67777775443 4 6999999999999999 899999999
Q ss_pred CccceEEEEeeeCCC
Q 024708 127 GGFCKLHISYSRHTD 141 (264)
Q Consensus 127 ~~~c~LrV~fSK~~~ 141 (264)
+ .|+|++++...
T Consensus 78 ~---~i~v~~~~~~~ 89 (198)
T 2yh0_A 78 Q---SLKIRRPHDYQ 89 (198)
T ss_dssp E---EEEEECCCCCC
T ss_pred c---eEEEeCCCCCC
Confidence 8 99999987653
No 196
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.14 E-value=1.6e-10 Score=102.03 Aligned_cols=76 Identities=16% Similarity=0.132 Sum_probs=66.5
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEe
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 136 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~f 136 (264)
.+++.|+|.+++ +.+|+++|+++|+.|| |..|++- +.++ +|||+|.+.++|+.|++.|||..|.++ .|+|++
T Consensus 20 ~~~~~l~V~nLp--~~~te~~l~~~F~~~G-i~~~~~~-~~~g-~afV~f~~~~~A~~A~~~l~~~~~~g~---~i~v~~ 91 (284)
T 3smz_A 20 RNRRKILIRGLP--GDVTNQEVHDLLSDYE-LKYCFVD-KYKG-TAFVTLLNGEQAEAAINAFHQSRLRER---ELSVQL 91 (284)
T ss_dssp HCCCEEEEECCC--TTCCHHHHHHHTTTSC-EEEEEEE-TTTT-EEEEEESSHHHHHHHHHHHTTCEETTE---ECEEEE
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHHcC-CEEEEEe-cCCC-EEEEEeCCHHHHHHHHHHcCCCeeCCe---EEEEEe
Confidence 356899999775 6999999999999999 9999884 4445 699999999999999999999999998 999999
Q ss_pred eeCC
Q 024708 137 SRHT 140 (264)
Q Consensus 137 SK~~ 140 (264)
+...
T Consensus 92 ~~~~ 95 (284)
T 3smz_A 92 QPTD 95 (284)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 7654
No 197
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.13 E-value=1.8e-11 Score=100.93 Aligned_cols=77 Identities=13% Similarity=0.161 Sum_probs=62.6
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEE-cCC---CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceE
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF-DKN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKL 132 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif-~K~---~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~L 132 (264)
...++|+|.+| ++.+|+++|.++|+.|| |++|+|. +++ ++ .|||+|++.++|++|+ .||+..|.++ .|
T Consensus 44 ~~~~~lfV~nL--p~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srG-faFV~F~~~e~A~~Al-~~~g~~l~gR---~i 115 (139)
T 2hgn_A 44 TTGHCVHMRGL--PYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTG-EADVEFATHEEAVAAM-SKDRANMQHR---YI 115 (139)
T ss_dssp -CCCCEECCSC--CTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSC-CCEEECSHHHHHHHHT-TCCSCSSSSC---CC
T ss_pred CCCCEEEEeCC--CCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCce-EEEEEeCCHHHHHHHH-hhCCCEECCE---EE
Confidence 34568888855 47999999999999999 7799864 332 34 5999999999999999 8999999998 88
Q ss_pred EEEeeeCCC
Q 024708 133 HISYSRHTD 141 (264)
Q Consensus 133 rV~fSK~~~ 141 (264)
+|..++...
T Consensus 116 ~V~~a~~~~ 124 (139)
T 2hgn_A 116 ELFLNSTTG 124 (139)
T ss_dssp CCEECCCSC
T ss_pred EEEECCCCC
Confidence 888776543
No 198
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=9.1e-11 Score=94.70 Aligned_cols=80 Identities=11% Similarity=0.130 Sum_probs=63.9
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCe----eEEEEEc-CCC--CceEEEEeCCHHHHHHHHHHhcCCeeCCCcc
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPV----QKIAMFD-KNG--GLQALIQYPDVQTAVVAKEALEGHCIYDGGF 129 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V----~rIkif~-K~~--g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~ 129 (264)
....+|+|.+|+ +.+|+++|.++|+.||.| .+|+|.. +.+ ...|||+|++.++|++|++. ||..|.++
T Consensus 21 ~~~~~v~V~nLp--~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR-- 95 (123)
T 2dha_A 21 ENQVIVRMRGLP--FTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKR-- 95 (123)
T ss_dssp CSCCEEEECSCC--TTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSC--
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCe--
Confidence 456789988654 799999999999999986 6787643 221 13699999999999999996 99988888
Q ss_pred ceEEEEeeeCCCC
Q 024708 130 CKLHISYSRHTDL 142 (264)
Q Consensus 130 c~LrV~fSK~~~l 142 (264)
.|+|..+...++
T Consensus 96 -~i~V~~a~~~e~ 107 (123)
T 2dha_A 96 -YIELFRSTAAEV 107 (123)
T ss_dssp -EECCEEECHHHH
T ss_pred -EEEEEECCHHHH
Confidence 888888865543
No 199
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.07 E-value=2e-10 Score=92.84 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=61.1
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC----CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEE
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 133 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~----~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~Lr 133 (264)
+++.|+|.+++ +.+|+++|+++|+.||.|.+|++.... ....|||+|.+.++|+.|++. +..|.|+ .|+
T Consensus 2 ~~~~l~v~nLp--~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~---~i~ 74 (167)
T 2cjk_A 2 ESCKMFIGGLN--WDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGK---VID 74 (167)
T ss_dssp GGGEEEECSCC--TTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTE---ECC
T ss_pred CCcEEEEeCCC--CCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCe---Ecc
Confidence 46789998665 699999999999999999999975431 113699999999999999994 6677777 788
Q ss_pred EEeeeC
Q 024708 134 ISYSRH 139 (264)
Q Consensus 134 V~fSK~ 139 (264)
|.+++.
T Consensus 75 v~~~~~ 80 (167)
T 2cjk_A 75 PKRAIP 80 (167)
T ss_dssp CEECCC
T ss_pred cccccc
Confidence 887754
No 200
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.06 E-value=9.6e-11 Score=95.19 Aligned_cols=77 Identities=14% Similarity=0.148 Sum_probs=62.0
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCee--EEEEEc-CC---CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccc
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQ--KIAMFD-KN---GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFC 130 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~--rIkif~-K~---~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c 130 (264)
...++|+|.+|+ +.+|+++|.++|+.| .|. +|+|.. +. +| .|||+|++.++|++|++. ++..|.++
T Consensus 40 ~~~~~lfVgnLp--~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrG-faFV~F~~~e~A~~Al~~-~~~~l~gR--- 111 (126)
T 2hgm_A 40 ANDGFVRLRGLP--FGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITG-EAFVQFASQELAEKALGK-HKERIGHR--- 111 (126)
T ss_dssp SSCCEEEEECCC--TTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCS-EEEEEESSTTHHHHHHTT-TTCCBTTB---
T ss_pred CCCCEEEEeCCC--CCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCce-EEEEEECCHHHHHHHHHH-CCCEECCE---
Confidence 346789988664 799999999999999 677 888643 22 34 599999999999999984 78888888
Q ss_pred eEEEEeeeCCC
Q 024708 131 KLHISYSRHTD 141 (264)
Q Consensus 131 ~LrV~fSK~~~ 141 (264)
.|+|..+...+
T Consensus 112 ~I~V~~a~~~e 122 (126)
T 2hgm_A 112 YIEVFKSSQEE 122 (126)
T ss_dssp CCCCEEECHHH
T ss_pred EEEEEECCHHH
Confidence 88888876543
No 201
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=6.4e-10 Score=86.38 Aligned_cols=77 Identities=18% Similarity=0.282 Sum_probs=62.4
Q ss_pred CCCCcEEEEEEccCC--cccCH----HHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCcc
Q 024708 56 EPESNVLLASIENMQ--YAVTL----DVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGF 129 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~--~~VT~----d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~ 129 (264)
.|+--+++|++.+.. ..... .+|.+.|+.||+|..|++... .+||+|.|.++|.+|++ |||..|.|+
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d----~~fVtF~d~~sAlaAi~-mnG~~v~Gr-- 76 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED----KMWVTFLEGSSALNVLS-LNGKELLNR-- 76 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS----SEEEEESSHHHHHHGGG-GTTCEETTE--
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC----CEEEEECChHHHHHHHh-cCCeEeCCe--
Confidence 356668888886521 12333 568899999999999998763 39999999999999999 999999998
Q ss_pred ceEEEEeeeCC
Q 024708 130 CKLHISYSRHT 140 (264)
Q Consensus 130 c~LrV~fSK~~ 140 (264)
.|+|++++..
T Consensus 77 -~LkV~lkt~d 86 (91)
T 2dnr_A 77 -TITIALKSPS 86 (91)
T ss_dssp -EEEEEECCCS
T ss_pred -EEEEEeCCCC
Confidence 9999987654
No 202
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.04 E-value=4.5e-10 Score=96.38 Aligned_cols=75 Identities=15% Similarity=0.078 Sum_probs=61.6
Q ss_pred CcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC-C--CceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEE
Q 024708 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN-G--GLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHIS 135 (264)
Q Consensus 59 s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~-~--g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~ 135 (264)
+++|+|.+++ +.+|+++|.++|+.||.|.+|+|.... + ...|||+|++.++|+.|++.++ ..|.|+ .|+|.
T Consensus 109 ~~~l~V~nLp--~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr---~l~V~ 182 (193)
T 2voo_A 109 NRSVYIKGFP--TDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKET---DLLIL 182 (193)
T ss_dssp HTEEEEECCC--TTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTE---ECEEE
T ss_pred cCEEEecCCC--CcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCE---EEEEE
Confidence 4689998765 689999999999999999999975421 1 1369999999999999998765 588887 89998
Q ss_pred eeeC
Q 024708 136 YSRH 139 (264)
Q Consensus 136 fSK~ 139 (264)
+++.
T Consensus 183 ~~~~ 186 (193)
T 2voo_A 183 FKDD 186 (193)
T ss_dssp ETTT
T ss_pred EhHH
Confidence 7654
No 203
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.01 E-value=1.2e-09 Score=96.41 Aligned_cols=79 Identities=18% Similarity=0.228 Sum_probs=63.9
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCC---CceEEEEeCCHHHHHHHHHHhc-CCeeC---CCcc
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNG---GLQALIQYPDVQTAVVAKEALE-GHCIY---DGGF 129 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~---g~~AfVqF~d~e~A~~A~~~Ln-G~~I~---g~~~ 129 (264)
.+++.|+|.+++ +.+|+++|+++|+.||.|.+|++..... ...|||+|.+.++|..|++.|| |..+. ++
T Consensus 94 ~~~~~l~v~nl~--~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r-- 169 (261)
T 3sde_A 94 THGAALTVKNLS--PVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPR-- 169 (261)
T ss_dssp CCSSEEEEESCC--TTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCC--
T ss_pred ccCCcccccCCC--CCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCc--
Confidence 456789998765 6999999999999999999999753321 1369999999999999999995 55544 55
Q ss_pred ceEEEEeeeCC
Q 024708 130 CKLHISYSRHT 140 (264)
Q Consensus 130 c~LrV~fSK~~ 140 (264)
.|+|++++..
T Consensus 170 -~i~v~~~~~~ 179 (261)
T 3sde_A 170 -PVIVEPMEQF 179 (261)
T ss_dssp -BCEEEECCCE
T ss_pred -eEEEeecccc
Confidence 8999998754
No 204
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.98 E-value=1.4e-09 Score=88.88 Aligned_cols=79 Identities=14% Similarity=0.188 Sum_probs=64.2
Q ss_pred CCCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEE----cCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccce
Q 024708 56 EPESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMF----DKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCK 131 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif----~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~ 131 (264)
..+++.|+|.+++ +.+|+++|+++|+.||.|..+.+. .+.++ .|||+|.+.++|+.|++ |||..|.++ .
T Consensus 10 ~~~~~~l~V~nLp--~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g-~afV~f~~~~~a~~A~~-l~g~~~~g~---~ 82 (175)
T 1fje_B 10 STTPFNLFIGNLN--PNKSVAELKVAISELFAKNDLAVVDVRTGTNRK-FGYVDFESAEDLEKALE-LTGLKVFGN---E 82 (175)
T ss_dssp CSSSEEEEEECCC--TTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTT-EEEEEESSHHHHHHHHH-GGGEEETTE---E
T ss_pred CCCCcEEEEeCCC--CCCCHHHHHHHHHHhCCcceEEEEECCCCcccc-EEEEEECCHHHHHHHHh-cCCCEeCCe---E
Confidence 3457899999776 599999999999999977653221 12334 69999999999999994 999999998 9
Q ss_pred EEEEeeeCCC
Q 024708 132 LHISYSRHTD 141 (264)
Q Consensus 132 LrV~fSK~~~ 141 (264)
|+|++++...
T Consensus 83 l~v~~~~~~~ 92 (175)
T 1fje_B 83 IKLEKPKGRD 92 (175)
T ss_dssp EEEECCCCSS
T ss_pred EEEecCCCcc
Confidence 9999998653
No 205
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.95 E-value=1.7e-09 Score=89.54 Aligned_cols=78 Identities=18% Similarity=0.280 Sum_probs=60.9
Q ss_pred cEEEEEEc--cCCcccCHHHHHHHHhccCCeeEEEEE-cCCCC---ceEEEEeCC----HHH----HHHHHH--HhcCCe
Q 024708 60 NVLLASIE--NMQYAVTLDVLHMVFSAFGPVQKIAMF-DKNGG---LQALIQYPD----VQT----AVVAKE--ALEGHC 123 (264)
Q Consensus 60 ~VL~V~~l--N~~~~VT~d~L~~LFs~yG~V~rIkif-~K~~g---~~AfVqF~d----~e~----A~~A~~--~LnG~~ 123 (264)
.-|+|+++ +-++.+|++.|.++|+.||.|.+++++ ++..+ +.|||+|.| +++ |..|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 46888877 113699999999999999999999964 43321 359999996 434 788888 899999
Q ss_pred eCCCccceEEEEeeeCC
Q 024708 124 IYDGGFCKLHISYSRHT 140 (264)
Q Consensus 124 I~g~~~c~LrV~fSK~~ 140 (264)
|.|+ +|+|++-+..
T Consensus 83 I~Gr---~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGF---KFEVILNKHS 96 (136)
T ss_dssp ETTE---EEEEEECCTT
T ss_pred ecCc---EEEEEECccc
Confidence 9998 9999986654
No 206
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=6.1e-09 Score=81.44 Aligned_cols=73 Identities=14% Similarity=0.255 Sum_probs=59.7
Q ss_pred CCCCcEEEEEEccCC---cccCH----HHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCc
Q 024708 56 EPESNVLLASIENMQ---YAVTL----DVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGG 128 (264)
Q Consensus 56 ~~~s~VL~V~~lN~~---~~VT~----d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~ 128 (264)
.|+--+++|.+++.. ..... .+|.+.|+.||+|..|++... .+||+|.|.++|.+|++ |||.+|.++
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d----~~fVtF~d~~sAl~AI~-ldG~~v~Gr- 85 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG----QMLVTFADSHSALSVLD-VDGMKVKGR- 85 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT----EEEEECSCSHHHHHHHH-GGGSEETTE-
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC----cEEEEEcChHHHHHHHh-cCCeeeCCe-
Confidence 466778899987531 11222 458899999999999998753 39999999999999998 999999998
Q ss_pred cceEEEEe
Q 024708 129 FCKLHISY 136 (264)
Q Consensus 129 ~c~LrV~f 136 (264)
.|+|++
T Consensus 86 --~L~V~~ 91 (95)
T 1ufw_A 86 --AVKISG 91 (95)
T ss_dssp --EEEEEC
T ss_pred --EEEEec
Confidence 999976
No 207
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.83 E-value=1.9e-08 Score=81.67 Aligned_cols=76 Identities=14% Similarity=0.154 Sum_probs=62.3
Q ss_pred CCCCCcEEEEEEccCCcc-cCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCC-HHHHHHHHHHhc--CCeeCCCccc
Q 024708 55 LEPESNVLLASIENMQYA-VTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPD-VQTAVVAKEALE--GHCIYDGGFC 130 (264)
Q Consensus 55 ~~~~s~VL~V~~lN~~~~-VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d-~e~A~~A~~~Ln--G~~I~g~~~c 130 (264)
..+.+.||+|.+++ +. +|.++|+++|+.||.|..|.+..... .|||+|.+ .++|..|+..|| |..|.+.
T Consensus 14 ~~~~G~il~v~~l~--~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~g~--- 86 (121)
T 1owx_A 14 EEKIGCLLKFSGDL--DDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLRNK--- 86 (121)
T ss_dssp SCCCCCEEEEEESC--CSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTTSS---
T ss_pred cccCCeEEEEecCC--CCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEeCc---
Confidence 44678899999876 46 99999999999999999999865443 69999999 899999999995 6666776
Q ss_pred eEEEEee
Q 024708 131 KLHISYS 137 (264)
Q Consensus 131 ~LrV~fS 137 (264)
.++++..
T Consensus 87 ~~~~evL 93 (121)
T 1owx_A 87 EVTWEVL 93 (121)
T ss_dssp SEEEEEC
T ss_pred EEEEEEC
Confidence 5666544
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.67 E-value=3.4e-08 Score=84.92 Aligned_cols=80 Identities=14% Similarity=0.160 Sum_probs=61.2
Q ss_pred CCcEEEEEEccCCc---ccCHHHHHHHHhccCCeeEEEEEcCCC--------CceEEEEeCCHHHHHHHHHHhcCCeeCC
Q 024708 58 ESNVLLASIENMQY---AVTLDVLHMVFSAFGPVQKIAMFDKNG--------GLQALIQYPDVQTAVVAKEALEGHCIYD 126 (264)
Q Consensus 58 ~s~VL~V~~lN~~~---~VT~d~L~~LFs~yG~V~rIkif~K~~--------g~~AfVqF~d~e~A~~A~~~LnG~~I~g 126 (264)
.+.++.+.+.-... .-.+++|++.|++||.|.+|+|.+... .+.+||+|.+.++|++|++.|||..+.|
T Consensus 123 ~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g 202 (222)
T 3dxb_A 123 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 202 (222)
T ss_dssp BCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred ccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC
Confidence 34566655443222 234568999999999999999863211 1369999999999999999999999999
Q ss_pred CccceEEEEeeeCC
Q 024708 127 GGFCKLHISYSRHT 140 (264)
Q Consensus 127 ~~~c~LrV~fSK~~ 140 (264)
+ .|+++|+..+
T Consensus 203 r---~i~~~~~~~~ 213 (222)
T 3dxb_A 203 R---KVVAEVYDQE 213 (222)
T ss_dssp S---BCEEEECCHH
T ss_pred e---EEEEEEcCHH
Confidence 9 9999997543
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.33 E-value=1.4e-06 Score=70.05 Aligned_cols=69 Identities=13% Similarity=0.140 Sum_probs=60.2
Q ss_pred cEEEEEEccCCcccCHHHHHHHHhcc-----CCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEE
Q 024708 60 NVLLASIENMQYAVTLDVLHMVFSAF-----GPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 134 (264)
Q Consensus 60 ~VL~V~~lN~~~~VT~d~L~~LFs~y-----G~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV 134 (264)
++|-+. |++..|+...++.+...| |.+.||.+...-+ -|+|+|.|...|.+|.-.|||..|.++ +|++
T Consensus 22 rtiaL~--~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~--GAivef~d~~~AgKasLaL~G~ef~gr---~Lr~ 94 (117)
T 2l9w_A 22 TLICLF--PLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN--GAIIIFRDSKFAAKMLMILNGSQFQGK---VIRS 94 (117)
T ss_dssp SCEEEE--CCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT--EEEEECSCHHHHHHHHHHHSSEEETTE---EEEE
T ss_pred cEEEEe--cCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC--ceEEEEccchhhHHHHhhcCCeeecCe---EEEe
Confidence 455555 566799999999999999 9999999887664 399999999999999999999999988 8887
Q ss_pred E
Q 024708 135 S 135 (264)
Q Consensus 135 ~ 135 (264)
-
T Consensus 95 g 95 (117)
T 2l9w_A 95 G 95 (117)
T ss_dssp E
T ss_pred c
Confidence 4
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.77 E-value=4.3e-05 Score=60.53 Aligned_cols=75 Identities=13% Similarity=0.223 Sum_probs=61.6
Q ss_pred cEEEEEEccCCccc-CH----HHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEE
Q 024708 60 NVLLASIENMQYAV-TL----DVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHI 134 (264)
Q Consensus 60 ~VL~V~~lN~~~~V-T~----d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV 134 (264)
+.|+|++++. .| +. +.+..||..|+.+.....++.=+ -..|.|.+.++|.+|...|++..+.|+ +|||
T Consensus 6 ntLiitnl~~--~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR--Rirv~F~~~~~A~~AR~~Lh~~~f~g~---~~r~ 78 (104)
T 1wey_A 6 SGLIACVAND--DVFSESETRAKFESLFRTYDKDTTFQYFKSFK--RVRINFSNPLSAADARLRLHKTEFLGK---EMKL 78 (104)
T ss_dssp CEEEEECCCG--GGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT--EEEEECSSTTHHHHHHHTSTTSEETTE---ECEE
T ss_pred ceEEEecCCH--HHcCCHHHHHHHHHHHHhhCcCcceeecCcce--EEEEEeCChHHHHHHHHHhccceecCc---eeEE
Confidence 4688888865 23 22 46789999999999988775322 489999999999999999999999998 9999
Q ss_pred EeeeCCC
Q 024708 135 SYSRHTD 141 (264)
Q Consensus 135 ~fSK~~~ 141 (264)
.|+....
T Consensus 79 YFgq~~~ 85 (104)
T 1wey_A 79 YFAQTLH 85 (104)
T ss_dssp ECCCCSS
T ss_pred EecCCCC
Confidence 9998544
No 211
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.63 E-value=0.0046 Score=48.53 Aligned_cols=57 Identities=21% Similarity=0.281 Sum_probs=45.4
Q ss_pred CCCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhc
Q 024708 57 PESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALE 120 (264)
Q Consensus 57 ~~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~Ln 120 (264)
....||+| .++ ......+|.++|+.||.| .|+-.+.. .|||.|.+.+.|..|+..++
T Consensus 14 ~r~HVf~l-~FP--~ewKt~DI~~lFs~fggv-~I~WidDT---sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 14 KRDHVLHV-TFP--KEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCSEEEE-ECC--TTCCHHHHHHHHTTTCSC-CCEEEETT---EEEEECSCHHHHHHHHHHHH
T ss_pred CCCeEEEE-eCC--hhhhhHHHHHHhhccCCE-EEEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 44578888 554 488899999999999954 34444433 79999999999999999886
No 212
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.53 E-value=0.0018 Score=62.96 Aligned_cols=54 Identities=15% Similarity=0.313 Sum_probs=39.5
Q ss_pred cEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHH
Q 024708 60 NVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKE 117 (264)
Q Consensus 60 ~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~ 117 (264)
+.++|+.. ..+++++|.+.|++||.|.++.+++.+ |.+|+|||++.++++.+++
T Consensus 54 rsv~v~~~---~~~~~~~l~~y~~~~g~i~~~~~~~~~-g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIHCP---EKISENKFLKYLSQFGPINNHFFYESF-GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEEEC---CC---CHHHHHHGGGSCCCCEEEECSS-SEEEEEECC---CCHHHHS
T ss_pred ceEEEEcC---CCCCHHHHHHHHHhcCCcceEEEEccC-CeEEEEEeCCHHHHHHHHh
Confidence 56777753 379999999999999999999988655 6789999999999886543
No 213
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.28 E-value=0.0069 Score=47.58 Aligned_cols=60 Identities=22% Similarity=0.257 Sum_probs=45.9
Q ss_pred CcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeC
Q 024708 59 SNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIY 125 (264)
Q Consensus 59 s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~ 125 (264)
..||+| ..+ ......+|.+||+.||.| .|+-.+.. .|||.|.+.+.|..|+..+.-...|
T Consensus 6 ~HV~~l-~FP--~ewKt~Di~~lFs~fggv-~I~WidDT---sAlvvf~~~~~a~~al~~i~~~~~y 65 (101)
T 3ctr_A 6 DHVLHV-TFP--KEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVKIAVNTSKYAESY 65 (101)
T ss_dssp EEEEEE-ECC--TTCCHHHHHHHTTTSEEE-EEEEEETT---EEEEEEEEECHHHHHHHHHTTCSSC
T ss_pred CeEEEE-eCC--hhhhhHHHHHHHhccCCE-EEEEEcCC---eEEEEecCHHHHHHHHHhcccCCce
Confidence 468887 554 488899999999999933 34434433 7999999999999999998644433
No 214
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.85 E-value=0.033 Score=44.85 Aligned_cols=61 Identities=16% Similarity=0.165 Sum_probs=45.8
Q ss_pred EEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCC
Q 024708 61 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDG 127 (264)
Q Consensus 61 VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~ 127 (264)
-+.|.... .-..+.+-+.|++||+|+++..- .+.. --.|+|++..+|++|+. .||..|.+.
T Consensus 26 wVtVFGFp---~~~~~~VL~~F~~~G~Iv~~~~~-~~~N-WihI~Y~s~~~A~rAL~-kNG~ii~g~ 86 (119)
T 1wwh_A 26 WVTVFGFP---QASASYILLQFAQYGNILKHVMS-NTGN-WMHIRYQSKLQARKALS-KDGRIFGES 86 (119)
T ss_dssp EEEEECCC---GGGHHHHHHHHHTTSCEEEEEEC-SSSS-EEEEEESSHHHHHHHHT-TTTCEETTT
T ss_pred EEEEECCC---HHHHHHHHHHHHhhCcEEEeccC-CCCC-eEEEEeCCHHHHHHHHH-hCCeEecCC
Confidence 44455443 33467778889999999998863 2323 48899999999999997 599888764
No 215
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.70 E-value=0.048 Score=43.03 Aligned_cols=67 Identities=15% Similarity=0.159 Sum_probs=51.2
Q ss_pred CcEEEEEEccCCcccCHHHHHHHHhcc-----CCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEE
Q 024708 59 SNVLLASIENMQYAVTLDVLHMVFSAF-----GPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 133 (264)
Q Consensus 59 s~VL~V~~lN~~~~VT~d~L~~LFs~y-----G~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~Lr 133 (264)
.+.|.|.++. ..+.+|.|.-.|+.= |.|.+|+.+. + .|+|+|.|.+.|++.++. .-+.|++. .|.
T Consensus 8 ~~~I~V~~lP--p~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-~---~AvItF~d~~va~rVL~k-~~H~L~~~---~Ls 77 (104)
T 2dhx_A 8 GVAVEVRGLP--PAVPDELLTLYFENRRRSGGGPVLSWQRLG-C---GGVLTFREPADAERVLAQ-ADHELHGA---QLS 77 (104)
T ss_dssp CCEEEEESCC--TTSCHHHHHHHHHCTTTTCCCCEEEEEEET-T---EEEEEESSHHHHHHHHTC-SCCBSSSS---BCE
T ss_pred ccEEEEECCC--CCCChhHheEEEeCCCcCCCceeeEEEEcC-C---cEEEEEcChHHHHHHhcC-CcceecCe---EEE
Confidence 4678888665 589999999999982 6899999876 3 699999999999887764 23555555 666
Q ss_pred EE
Q 024708 134 IS 135 (264)
Q Consensus 134 V~ 135 (264)
|.
T Consensus 78 V~ 79 (104)
T 2dhx_A 78 LR 79 (104)
T ss_dssp EE
T ss_pred EE
Confidence 63
No 216
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=92.35 E-value=1.7 Score=33.10 Aligned_cols=79 Identities=10% Similarity=0.193 Sum_probs=57.5
Q ss_pred EEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC------CCceEEEEeCCHHHHHHHHHHhcCCeeCCC-c-cceE
Q 024708 61 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN------GGLQALIQYPDVQTAVVAKEALEGHCIYDG-G-FCKL 132 (264)
Q Consensus 61 VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~------~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~-~-~c~L 132 (264)
-|.|..|++ .+|++++.+.++.+..+........+ .-.-|+|.|.+.+++..-.+.++|+.+.+. | ...-
T Consensus 3 KvVIRrLPP--~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a 80 (91)
T 1uw4_A 3 KVVIRRLPP--TLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPA 80 (91)
T ss_dssp EEEEEEECT--TCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEEC
T ss_pred EEEEeCCCC--CCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeee
Confidence 356676664 99999999999999877655543322 113599999999999999999999988765 1 2234
Q ss_pred EEEeeeCCC
Q 024708 133 HISYSRHTD 141 (264)
Q Consensus 133 rV~fSK~~~ 141 (264)
.|+||--+.
T Consensus 81 ~VE~AP~qk 89 (91)
T 1uw4_A 81 IVEFAPFQK 89 (91)
T ss_dssp EEEECSSCC
T ss_pred EEEEcCCCc
Confidence 577775443
No 217
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.52 E-value=1.1 Score=43.73 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=45.9
Q ss_pred CCcEEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCC
Q 024708 58 ESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGH 122 (264)
Q Consensus 58 ~s~VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~ 122 (264)
...||+|. .. ..+...+|.++|+.||.| +|+-+++. .|||.|.+.+.|..+++.++..
T Consensus 439 R~~vl~v~-f~--~~~~~~~i~~~fs~fg~v-~V~widdt---~a~V~~~~~~~a~~~l~~~~~~ 496 (507)
T 3d45_A 439 RDHVLHVT-FP--KEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVQIAVNTSKYA 496 (507)
T ss_dssp GGGEEEEE-CC--TTCCHHHHHHHGGGGCCC-EEEECSSS---EEEEECSCHHHHHHHHHHHTTC
T ss_pred cCcEEEEe-CC--CCCCHHHHHHHHHhcCCE-EEEEEcCC---eEEEEECCHHHHHHHHHHHHhC
Confidence 35688876 33 467889999999999954 56655544 7999999999999999999743
No 218
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=88.16 E-value=0.14 Score=40.66 Aligned_cols=37 Identities=11% Similarity=-0.005 Sum_probs=32.3
Q ss_pred ceEEEEeCCHHHHHHHHHHh-cCCeeCCCccceEEEEeeeCC
Q 024708 100 LQALIQYPDVQTAVVAKEAL-EGHCIYDGGFCKLHISYSRHT 140 (264)
Q Consensus 100 ~~AfVqF~d~e~A~~A~~~L-nG~~I~g~~~c~LrV~fSK~~ 140 (264)
++++|+|.+.++|++|++.| ||..|.| .|++++++..
T Consensus 14 G~~~ve~~~~~~A~~a~~~~~ng~~~~G----~~~~~~a~~~ 51 (150)
T 2i2y_A 14 GETTTEAVDAATAEKVFKQYANDNGVDG----EWTYDDATKT 51 (150)
T ss_dssp EEEEEECSSHHHHTTTHHHHHHHHTCCC----EEEEETTTTE
T ss_pred ccceeeecCHHHHHHHHHHHhcCCCCCC----ceecccccCc
Confidence 37999999999999999999 9988877 7888887654
No 219
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=86.62 E-value=0.64 Score=37.98 Aligned_cols=62 Identities=18% Similarity=0.165 Sum_probs=41.6
Q ss_pred ccCHHHHHHHHhccCCeeEEE-EEc------------CC-----CCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEE
Q 024708 72 AVTLDVLHMVFSAFGPVQKIA-MFD------------KN-----GGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLH 133 (264)
Q Consensus 72 ~VT~d~L~~LFs~yG~V~rIk-if~------------K~-----~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~Lr 133 (264)
.-....+-+.|++||+|++-. ..+ |+ ++.---|+|++..+|.+|++ -||..|.| + .|-
T Consensus 17 ~~~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ii~G--~-mIG 92 (132)
T 3p3d_A 17 ETMANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAVFNG--V-LLG 92 (132)
T ss_dssp GGGHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCEETT--E-ECE
T ss_pred HHHHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeEeCc--E-EEE
Confidence 344566778899999998722 111 00 11136899999999999997 59987755 2 666
Q ss_pred EEee
Q 024708 134 ISYS 137 (264)
Q Consensus 134 V~fS 137 (264)
|..-
T Consensus 93 V~Py 96 (132)
T 3p3d_A 93 VIPY 96 (132)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 6544
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=86.08 E-value=0.8 Score=36.25 Aligned_cols=28 Identities=18% Similarity=0.028 Sum_probs=23.5
Q ss_pred ceEEEEeCCHHHHHHHHHHhcCCeeCCC
Q 024708 100 LQALIQYPDVQTAVVAKEALEGHCIYDG 127 (264)
Q Consensus 100 ~~AfVqF~d~e~A~~A~~~LnG~~I~g~ 127 (264)
++|||+|.+.++|++|++.+++....++
T Consensus 14 G~~fV~f~~~~~A~~al~~~~~~~~~~~ 41 (158)
T 2kn4_A 14 GETTTEAVDAATAEKVFKQYANDNGVDG 41 (158)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHTCCC
T ss_pred chhHHHHHHHHhHHHHHHhhcccCCCCC
Confidence 3699999999999999999987655444
No 221
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=67.76 E-value=12 Score=28.76 Aligned_cols=76 Identities=9% Similarity=0.131 Sum_probs=51.5
Q ss_pred EEEEEEccCCcccCHHHHHHHHhccCCeeEEEEEcCC------CCceEEEEeCCHHHHHHHHHHhcCCeeCCC--ccceE
Q 024708 61 VLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKN------GGLQALIQYPDVQTAVVAKEALEGHCIYDG--GFCKL 132 (264)
Q Consensus 61 VL~V~~lN~~~~VT~d~L~~LFs~yG~V~rIkif~K~------~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~--~~c~L 132 (264)
.|.|..|+ ..+|++++.+.++..=.+.....+..+ .---|+|.|.+.++...-.+..+|..+.+. +...-
T Consensus 11 KvVIRrLP--P~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 11 MVVIRRLP--PGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CEEEECCC--SCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred eEEEeCCC--CCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 45666555 599999999888876443222221111 012499999999999999999999988765 12345
Q ss_pred EEEeee
Q 024708 133 HISYSR 138 (264)
Q Consensus 133 rV~fSK 138 (264)
.|+||-
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 577764
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=66.77 E-value=14 Score=25.92 Aligned_cols=68 Identities=6% Similarity=0.065 Sum_probs=42.6
Q ss_pred EEEEEccCCcccCHHHHHHHHhccCC-----eeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCCCccceEEEEe
Q 024708 62 LLASIENMQYAVTLDVLHMVFSAFGP-----VQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYDGGFCKLHISY 136 (264)
Q Consensus 62 L~V~~lN~~~~VT~d~L~~LFs~yG~-----V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g~~~c~LrV~f 136 (264)
|++.+.-- ..++..+|-..++.-+. |-+|.+++. ++||+-... .|..+++.|++..+.++ .++|+.
T Consensus 3 ~~i~~Grk-~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~----~s~v~v~~~-~~~~~~~~l~~~~i~g~---~~~v~~ 73 (76)
T 2g0c_A 3 LYFNGGKK-KKIRAVDFVGTIAKIDGVSADDIGIITIMDN----ASYVEILNG-KGPHVLKVMKNTTVKGK---QLKVNK 73 (76)
T ss_dssp EEESCCCC-----CHHHHHHHHTSTTCCGGGEEEEEECSS----CEEEEECTT-CHHHHHHHHTTCCC------CCCEEE
T ss_pred EEEeCCCc-cCCCHHHHHHHHHHccCCChhhccEEEEeCC----cEEEEECHH-HHHHHHHHhccccCcCc---eEEEEE
Confidence 45544333 46677776666665444 557777653 599998876 58889999999999998 777776
Q ss_pred ee
Q 024708 137 SR 138 (264)
Q Consensus 137 SK 138 (264)
++
T Consensus 74 ~~ 75 (76)
T 2g0c_A 74 AN 75 (76)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 223
>3off_A LDLR chaperone BOCA; MESD, molecular chaperone, protein folding, YWTD propeller; 2.00A {Drosophila melanogaster} PDB: 3ofe_A*
Probab=28.63 E-value=1.9e+02 Score=21.83 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=38.0
Q ss_pred CcEEEEEEccCCcccCHHHHH--------HHHhccCCeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCe
Q 024708 59 SNVLLASIENMQYAVTLDVLH--------MVFSAFGPVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHC 123 (264)
Q Consensus 59 s~VL~V~~lN~~~~VT~d~L~--------~LFs~yG~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~ 123 (264)
+=.+||.+.. +.|+++.. .||...=.+++. +++.+ .|++.|.|.++|-.|++.|=.+.
T Consensus 11 tlMmFV~v~~---~~t~~e~d~lt~lWqtsL~Nnhi~~~ry-~Id~d---r~ifmf~DGs~a~e~kdfL~~Q~ 76 (90)
T 3off_A 11 TLMTFVSVTG---NPTREESDTITKLWQTSLWNNHIQAERY-MVDDN---RAIFLFKDGTQAWDAKDFLIEQE 76 (90)
T ss_dssp CEEEEEEESS---SCCHHHHHHHHHHHHHHHHHTTCCEEEE-EEETT---EEEEEESSGGGHHHHHHHHTTST
T ss_pred eEEEEEEecC---CCCHHHHHHHHHHHHHHHHhCCeeEEEE-EecCC---EEEEEEcChHHHHHHHHHHhcCc
Confidence 3466777654 45555444 345555334443 34433 59999999999999999997654
No 224
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.62 E-value=18 Score=26.19 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=14.2
Q ss_pred cCCeeEEEEEcCCCCceEEEEeCCH
Q 024708 85 FGPVQKIAMFDKNGGLQALIQYPDV 109 (264)
Q Consensus 85 yG~V~rIkif~K~~g~~AfVqF~d~ 109 (264)
.|+|++|... +. .+||+|+|.
T Consensus 27 lGtV~kV~~~---~~-~ClV~FeD~ 47 (68)
T 2e5p_A 27 LGTIKKVDSA---RE-VCLVQFEDD 47 (68)
T ss_dssp EEEEEEEETT---TT-EEEEEETTT
T ss_pred EeEEEEEecC---Cc-EEEEEEccC
Confidence 4777777532 22 699999985
No 225
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=24.76 E-value=2.3e+02 Score=21.52 Aligned_cols=54 Identities=13% Similarity=0.119 Sum_probs=33.1
Q ss_pred ccCHHHHHHHHhccC-CeeEEEEEcCCCCceEEEEeCCHHHHHHHHHHhcCCeeCC
Q 024708 72 AVTLDVLHMVFSAFG-PVQKIAMFDKNGGLQALIQYPDVQTAVVAKEALEGHCIYD 126 (264)
Q Consensus 72 ~VT~d~L~~LFs~yG-~V~rIkif~K~~g~~AfVqF~d~e~A~~A~~~LnG~~I~g 126 (264)
+=....++++++..| +|..+..+.+.......|+++|.+.|.++++. .|.++..
T Consensus 83 pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~d~~~A~~~L~~-~g~~v~~ 137 (144)
T 2f06_A 83 PGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKCIEVLKE-KKVDLLA 137 (144)
T ss_dssp TTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCHHHHHHHHHH-TTCEEEC
T ss_pred CcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeCCHHHHHHHHHH-cCCEEec
Confidence 334455666666666 66666655212122456788888888888776 6766643
No 226
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=22.49 E-value=25 Score=26.07 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=14.6
Q ss_pred cCCeeEEEEEcCCCCceEEEEeCCHH
Q 024708 85 FGPVQKIAMFDKNGGLQALIQYPDVQ 110 (264)
Q Consensus 85 yG~V~rIkif~K~~g~~AfVqF~d~e 110 (264)
.|+|.+|... . .++||+|+|..
T Consensus 44 LGTI~kV~~~--~--e~ClV~F~D~S 65 (79)
T 2m0o_A 44 LGTIKKVDSA--R--EVCLVQFEDDS 65 (79)
T ss_dssp EEEEEEEETT--T--TEEEEEETTSC
T ss_pred eEEEEEeccC--C--CEEEEEEcCCC
Confidence 4777776432 2 26999999854
No 227
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=21.17 E-value=53 Score=23.60 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=13.0
Q ss_pred CCeeEEEEEcCCCCceEEEEeCCH
Q 024708 86 GPVQKIAMFDKNGGLQALIQYPDV 109 (264)
Q Consensus 86 G~V~rIkif~K~~g~~AfVqF~d~ 109 (264)
|+|++|. +.++ .++|+|+|.
T Consensus 32 gtI~~V~---~~~g-tC~V~F~D~ 51 (66)
T 2eqj_A 32 GTIKKIN---ILKQ-SCFIIFEDS 51 (66)
T ss_dssp EEEEEEE---TTTT-EEEEEETTT
T ss_pred eEEEEEc---cCCc-EEEEEEccC
Confidence 5666653 3323 699999985
No 228
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=20.66 E-value=21 Score=27.66 Aligned_cols=28 Identities=4% Similarity=-0.103 Sum_probs=0.0
Q ss_pred ceEEEEeCCHHHHHHHHHHhcCCeeCCC
Q 024708 100 LQALIQYPDVQTAVVAKEALEGHCIYDG 127 (264)
Q Consensus 100 ~~AfVqF~d~e~A~~A~~~LnG~~I~g~ 127 (264)
+.+|++|+|...|..|++.++|....++
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~ 32 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGR 32 (135)
T ss_dssp ----------------------------
T ss_pred ccccccccCCCchhhhhhhccCCCCCCC
Confidence 4689999999999999999999876664
Done!