Query 024709
Match_columns 264
No_of_seqs 163 out of 1283
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 06:45:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024709.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024709hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02762 pyruvate kinase compl 100.0 8.5E-85 1.9E-89 630.6 29.1 259 6-264 246-509 (509)
2 PTZ00066 pyruvate kinase; Prov 100.0 2.5E-83 5.4E-88 620.2 28.3 258 4-264 249-513 (513)
3 PTZ00300 pyruvate kinase; Prov 100.0 1.2E-80 2.5E-85 596.4 28.5 258 3-263 185-453 (454)
4 PLN02461 Probable pyruvate kin 100.0 1.4E-80 3E-85 601.5 28.4 256 5-263 234-510 (511)
5 PRK09206 pyruvate kinase; Prov 100.0 5.1E-80 1.1E-84 594.1 28.3 252 5-263 213-470 (470)
6 COG0469 PykF Pyruvate kinase [ 100.0 7.8E-80 1.7E-84 590.4 27.0 256 3-263 214-477 (477)
7 PRK06247 pyruvate kinase; Prov 100.0 1.1E-79 2.5E-84 591.4 27.2 255 5-264 210-471 (476)
8 PLN02765 pyruvate kinase 100.0 3.2E-79 6.9E-84 592.5 28.6 255 5-264 248-525 (526)
9 PRK06354 pyruvate kinase; Prov 100.0 1.3E-78 2.8E-83 598.7 28.4 255 3-263 217-478 (590)
10 cd00288 Pyruvate_Kinase Pyruva 100.0 3.4E-77 7.4E-82 577.1 28.2 258 3-263 212-480 (480)
11 PRK05826 pyruvate kinase; Prov 100.0 8E-77 1.7E-81 572.6 26.7 246 3-254 211-458 (465)
12 PLN02623 pyruvate kinase 100.0 9.7E-73 2.1E-77 551.2 27.8 256 3-264 316-580 (581)
13 KOG2323 Pyruvate kinase [Carbo 100.0 1E-71 2.2E-76 532.4 21.6 257 4-263 233-501 (501)
14 TIGR01064 pyruv_kin pyruvate k 100.0 1.4E-69 2.9E-74 525.0 25.7 253 5-260 212-473 (473)
15 PRK06739 pyruvate kinase; Vali 100.0 6.3E-53 1.4E-57 393.7 13.7 128 5-132 206-333 (352)
16 PF00224 PK: Pyruvate kinase, 100.0 3.6E-51 7.7E-56 383.4 8.7 129 5-133 216-344 (348)
17 PRK14725 pyruvate kinase; Prov 100.0 1.5E-43 3.3E-48 346.4 12.7 121 5-131 472-597 (608)
18 PRK08187 pyruvate kinase; Vali 100.0 9.3E-41 2E-45 323.6 13.2 120 5-130 355-479 (493)
19 PF02887 PK_C: Pyruvate kinase 100.0 1.2E-30 2.5E-35 209.0 13.5 109 154-262 1-117 (117)
20 COG3836 HpcH 2,4-dihydroxyhept 99.5 7.9E-15 1.7E-19 129.4 5.4 92 2-107 140-239 (255)
21 PRK10128 2-keto-3-deoxy-L-rham 99.5 2.2E-14 4.8E-19 130.4 5.1 92 2-107 141-240 (267)
22 TIGR03239 GarL 2-dehydro-3-deo 99.4 7.7E-14 1.7E-18 125.7 5.0 93 2-108 134-234 (249)
23 PRK10558 alpha-dehydro-beta-de 99.4 9.8E-14 2.1E-18 125.5 5.1 93 2-108 141-241 (256)
24 TIGR02311 HpaI 2,4-dihydroxyhe 99.3 8.6E-13 1.9E-17 118.9 4.9 92 2-107 135-234 (249)
25 PRK06464 phosphoenolpyruvate s 99.1 3.2E-10 6.9E-15 116.9 8.4 108 3-130 666-790 (795)
26 TIGR01418 PEP_synth phosphoeno 99.0 3.8E-10 8.3E-15 116.2 8.2 108 3-129 659-782 (782)
27 PF03328 HpcH_HpaI: HpcH/HpaI 99.0 7.7E-11 1.7E-15 103.8 1.2 92 4-103 117-218 (221)
28 TIGR01417 PTS_I_fam phosphoeno 98.7 2.4E-08 5.1E-13 99.7 7.7 91 3-104 419-525 (565)
29 PRK11177 phosphoenolpyruvate-p 98.6 4.5E-08 9.8E-13 97.8 6.3 91 3-104 420-526 (575)
30 TIGR01588 citE citrate lyase, 98.5 1.4E-07 3E-12 86.8 6.5 91 3-103 117-220 (288)
31 PF02896 PEP-utilizers_C: PEP- 97.5 0.00018 4E-09 66.5 6.1 92 4-106 173-280 (293)
32 cd00480 malate_synt Malate syn 97.2 0.00074 1.6E-08 66.9 6.1 100 5-104 218-345 (511)
33 cd00727 malate_synt_A Malate s 96.8 0.0025 5.4E-08 63.1 6.1 93 5-104 218-345 (511)
34 PRK09255 malate synthase; Vali 96.4 0.0076 1.6E-07 59.9 6.8 93 5-104 239-366 (531)
35 TIGR01344 malate_syn_A malate 96.3 0.0035 7.7E-08 61.9 4.0 94 5-104 219-346 (511)
36 PRK11061 fused phosphoenolpyru 96.0 0.013 2.7E-07 60.9 6.4 88 6-104 589-692 (748)
37 COG2301 CitE Citrate lyase bet 96.0 0.0061 1.3E-07 56.1 3.7 88 9-104 114-213 (283)
38 PLN02626 malate synthase 95.6 0.022 4.8E-07 56.7 5.8 98 5-104 245-372 (551)
39 COG1080 PtsA Phosphoenolpyruva 94.2 0.042 9E-07 55.0 3.5 89 5-104 423-527 (574)
40 PRK08649 inosine 5-monophospha 94.0 0.28 6.1E-06 46.9 8.5 85 6-104 187-285 (368)
41 COG3605 PtsP Signal transducti 92.5 0.15 3.3E-06 51.3 4.3 100 7-123 598-713 (756)
42 COG0574 PpsA Phosphoenolpyruva 92.2 0.26 5.7E-06 51.2 5.9 89 7-106 625-725 (740)
43 TIGR01828 pyru_phos_dikin pyru 91.9 0.28 6E-06 51.8 5.7 89 6-105 732-851 (856)
44 cd00945 Aldolase_Class_I Class 91.1 7.3 0.00016 32.4 12.7 161 15-202 11-182 (201)
45 PRK08227 autoinducer 2 aldolas 91.1 3.6 7.7E-05 37.7 11.3 105 84-199 94-199 (264)
46 COG1751 Uncharacterized conser 90.6 0.89 1.9E-05 38.5 6.3 48 154-201 12-60 (186)
47 PRK06852 aldolase; Validated 89.9 3.1 6.6E-05 38.9 10.0 173 14-197 15-235 (304)
48 PRK09250 fructose-bisphosphate 88.7 2.6 5.7E-05 40.1 8.7 134 18-173 89-234 (348)
49 COG1830 FbaB DhnA-type fructos 87.5 9.3 0.0002 35.0 11.1 164 19-197 10-207 (265)
50 TIGR01304 IMP_DH_rel_2 IMP deh 87.5 1.8 3.9E-05 41.5 6.9 85 6-104 188-284 (369)
51 PTZ00314 inosine-5'-monophosph 86.5 2.1 4.6E-05 42.5 7.1 83 7-105 283-374 (495)
52 TIGR01305 GMP_reduct_1 guanosi 85.2 4.3 9.3E-05 38.5 8.0 85 6-104 150-241 (343)
53 PRK09279 pyruvate phosphate di 85.0 1.7 3.6E-05 46.2 5.8 88 6-104 738-856 (879)
54 PF00478 IMPDH: IMP dehydrogen 84.1 3.7 8E-05 39.1 7.1 81 8-104 152-240 (352)
55 TIGR02751 PEPCase_arch phospho 83.2 1.6 3.4E-05 43.5 4.4 63 6-68 173-247 (506)
56 cd00381 IMPDH IMPDH: The catal 82.6 5.2 0.00011 37.5 7.5 82 7-104 136-226 (325)
57 cd00640 Trp-synth-beta_II Tryp 81.9 35 0.00075 29.9 13.9 121 51-200 61-188 (244)
58 COG0826 Collagenase and relate 81.8 6.8 0.00015 37.2 8.0 81 17-104 14-99 (347)
59 PRK07565 dihydroorotate dehydr 81.4 11 0.00024 35.2 9.2 108 6-132 165-291 (334)
60 cd00958 DhnA Class I fructose- 81.0 7.9 0.00017 34.0 7.7 82 19-105 79-164 (235)
61 PRK12595 bifunctional 3-deoxy- 80.9 35 0.00077 32.5 12.5 77 6-104 182-259 (360)
62 cd00959 DeoC 2-deoxyribose-5-p 80.9 30 0.00065 29.9 11.2 87 81-182 66-155 (203)
63 PRK13397 3-deoxy-7-phosphohept 80.2 46 0.001 30.2 13.2 76 6-104 79-156 (250)
64 PRK04169 geranylgeranylglycery 80.0 4.4 9.6E-05 36.4 5.7 59 21-104 24-83 (232)
65 TIGR01302 IMP_dehydrog inosine 79.2 9.5 0.00021 37.3 8.3 83 6-104 265-356 (450)
66 cd04728 ThiG Thiazole synthase 78.9 36 0.00078 31.0 11.2 83 29-127 145-227 (248)
67 PRK05096 guanosine 5'-monophos 78.9 11 0.00024 35.8 8.3 81 8-104 154-242 (346)
68 PRK15447 putative protease; Pr 78.5 12 0.00025 34.7 8.3 67 29-104 29-95 (301)
69 TIGR01859 fruc_bis_ald_ fructo 78.5 9.3 0.0002 35.2 7.6 117 7-127 75-199 (282)
70 PRK15452 putative protease; Pr 78.2 7 0.00015 38.4 7.0 87 7-105 4-97 (443)
71 TIGR01361 DAHP_synth_Bsub phos 78.2 50 0.0011 30.0 12.1 77 6-104 89-166 (260)
72 COG1646 Predicted phosphate-bi 77.7 3.7 7.9E-05 37.0 4.4 164 20-210 28-211 (240)
73 PF05690 ThiG: Thiazole biosyn 77.4 14 0.0003 33.5 8.0 81 29-125 145-225 (247)
74 PRK07807 inosine 5-monophospha 76.8 9.1 0.0002 37.9 7.4 85 6-104 268-359 (479)
75 TIGR01768 GGGP-family geranylg 76.5 5.3 0.00011 35.7 5.2 173 17-220 15-208 (223)
76 PRK00208 thiG thiazole synthas 75.9 49 0.0011 30.1 11.2 83 29-127 145-227 (250)
77 PLN02274 inosine-5'-monophosph 75.6 11 0.00025 37.5 7.8 84 6-104 289-380 (505)
78 KOG2178 Predicted sugar kinase 75.6 2.8 6.1E-05 40.4 3.3 80 165-253 281-374 (409)
79 COG0279 GmhA Phosphoheptose is 75.5 29 0.00062 29.9 9.0 60 154-213 24-94 (176)
80 PRK07998 gatY putative fructos 75.4 6.1 0.00013 36.5 5.4 111 8-123 76-194 (283)
81 PRK08318 dihydropyrimidine deh 75.3 18 0.0004 34.8 9.0 108 6-132 168-305 (420)
82 PRK04885 ppnK inorganic polyph 75.1 2.7 5.9E-05 38.4 3.0 53 167-221 145-202 (265)
83 COG0434 SgcQ Predicted TIM-bar 74.9 42 0.0009 30.6 10.3 90 88-194 38-143 (263)
84 cd01561 CBS_like CBS_like: Thi 74.3 50 0.0011 29.9 11.2 125 53-202 66-197 (291)
85 cd02940 DHPD_FMN Dihydropyrimi 74.3 14 0.00029 34.1 7.5 88 6-107 168-284 (299)
86 PRK13396 3-deoxy-7-phosphohept 74.1 82 0.0018 30.1 12.8 139 6-178 165-308 (352)
87 COG0061 nadF NAD kinase [Coenz 74.1 3.1 6.6E-05 38.2 3.1 38 165-202 161-202 (281)
88 cd02812 PcrB_like PcrB_like pr 74.0 3.9 8.5E-05 36.4 3.7 61 20-104 15-77 (219)
89 PLN02495 oxidoreductase, actin 73.8 25 0.00053 34.0 9.3 90 6-107 113-217 (385)
90 cd00452 KDPG_aldolase KDPG and 73.7 12 0.00027 31.8 6.7 38 53-104 87-124 (190)
91 PRK07695 transcriptional regul 73.6 20 0.00044 30.7 8.0 82 29-124 116-197 (201)
92 PRK12483 threonine dehydratase 73.3 45 0.00097 33.5 11.3 121 53-203 98-224 (521)
93 PRK07709 fructose-bisphosphate 73.1 8.7 0.00019 35.5 5.8 112 7-125 78-200 (285)
94 PRK07107 inosine 5-monophospha 72.2 8.2 0.00018 38.5 5.8 83 7-104 285-381 (502)
95 TIGR00674 dapA dihydrodipicoli 71.6 22 0.00048 32.3 8.2 102 17-128 19-124 (285)
96 PRK06381 threonine synthase; V 71.4 62 0.0013 29.7 11.2 125 50-202 73-209 (319)
97 PRK13655 phosphoenolpyruvate c 71.4 6.9 0.00015 39.0 5.0 63 6-68 163-239 (494)
98 PRK07315 fructose-bisphosphate 70.9 15 0.00033 34.0 7.0 102 7-114 78-183 (293)
99 TIGR00676 fadh2 5,10-methylene 70.3 85 0.0018 28.5 11.9 156 21-200 20-193 (272)
100 cd01562 Thr-dehyd Threonine de 70.1 48 0.001 30.0 10.1 120 53-202 78-202 (304)
101 PRK08185 hypothetical protein; 69.2 16 0.00035 33.7 6.7 116 6-125 68-195 (283)
102 PRK11840 bifunctional sulfur c 69.1 26 0.00057 33.1 8.1 80 30-125 220-299 (326)
103 TIGR01138 cysM cysteine syntha 68.6 84 0.0018 28.7 11.3 123 53-202 72-200 (290)
104 PRK14077 pnk inorganic polypho 68.4 4.7 0.0001 37.2 3.0 34 167-200 174-211 (287)
105 PF03102 NeuB: NeuB family; I 68.4 11 0.00025 33.9 5.4 75 18-114 78-154 (241)
106 PRK00561 ppnK inorganic polyph 68.1 4.9 0.00011 36.6 3.0 34 167-200 134-171 (259)
107 PRK07334 threonine dehydratase 67.8 57 0.0012 31.3 10.5 119 54-202 85-208 (403)
108 cd04730 NPD_like 2-Nitropropan 67.7 29 0.00064 30.1 7.9 83 6-105 102-186 (236)
109 PRK09224 threonine dehydratase 67.6 66 0.0014 32.0 11.1 121 53-203 81-207 (504)
110 PRK01911 ppnK inorganic polyph 67.5 4.6 9.9E-05 37.4 2.7 34 167-200 173-210 (292)
111 cd05017 SIS_PGI_PMI_1 The memb 67.4 8.1 0.00018 30.3 3.8 50 170-221 44-98 (119)
112 PRK06815 hypothetical protein; 67.4 60 0.0013 30.0 10.2 121 53-203 81-206 (317)
113 PRK03501 ppnK inorganic polyph 67.2 5.5 0.00012 36.4 3.2 37 166-202 145-185 (264)
114 PLN02970 serine racemase 66.8 80 0.0017 29.3 11.0 119 54-202 89-212 (328)
115 cd00952 CHBPH_aldolase Trans-o 66.6 40 0.00087 31.2 8.8 101 17-127 29-133 (309)
116 PRK05286 dihydroorotate dehydr 66.2 29 0.00063 32.6 8.0 110 6-132 211-341 (344)
117 PRK14045 1-aminocyclopropane-1 66.2 1.1E+02 0.0024 28.3 12.3 48 155-202 165-221 (329)
118 TIGR01769 GGGP geranylgeranylg 65.9 12 0.00026 32.9 5.0 56 24-104 19-76 (205)
119 PRK03372 ppnK inorganic polyph 65.7 6.7 0.00015 36.6 3.5 37 166-202 181-221 (306)
120 TIGR01139 cysK cysteine syntha 65.7 96 0.0021 28.2 11.1 125 53-203 70-201 (298)
121 PRK01231 ppnK inorganic polyph 65.5 5.8 0.00012 36.8 3.0 37 166-202 171-211 (295)
122 PRK01185 ppnK inorganic polyph 65.3 5.1 0.00011 36.7 2.6 35 167-201 155-193 (271)
123 PRK06801 hypothetical protein; 65.3 21 0.00045 33.0 6.6 105 6-114 74-186 (286)
124 PRK10717 cysteine synthase A; 65.2 1.1E+02 0.0024 28.3 11.6 130 54-202 78-213 (330)
125 TIGR01303 IMP_DH_rel_1 IMP deh 65.2 38 0.00082 33.6 8.8 82 6-105 266-358 (475)
126 PLN02274 inosine-5'-monophosph 65.1 71 0.0015 31.9 10.8 99 6-125 236-348 (505)
127 PRK02645 ppnK inorganic polyph 65.1 5.7 0.00012 36.9 2.9 37 166-202 175-215 (305)
128 TIGR01306 GMP_reduct_2 guanosi 64.8 27 0.0006 32.9 7.4 82 7-104 138-227 (321)
129 cd04739 DHOD_like Dihydroorota 64.6 48 0.001 30.9 9.0 108 6-133 163-290 (325)
130 PF00701 DHDPS: Dihydrodipicol 64.5 30 0.00065 31.4 7.5 102 17-128 22-127 (289)
131 PRK04761 ppnK inorganic polyph 64.5 7.1 0.00015 35.4 3.3 37 166-202 130-170 (246)
132 PRK03708 ppnK inorganic polyph 64.3 6.6 0.00014 36.0 3.1 36 166-201 161-200 (277)
133 cd04501 SGNH_hydrolase_like_4 64.3 13 0.00029 30.6 4.8 56 15-70 44-103 (183)
134 PRK08883 ribulose-phosphate 3- 64.2 46 0.00099 29.4 8.4 99 8-125 110-216 (220)
135 PRK05567 inosine 5'-monophosph 64.1 45 0.00098 32.9 9.1 82 8-104 272-360 (486)
136 PRK02649 ppnK inorganic polyph 64.0 7.4 0.00016 36.3 3.4 34 167-200 178-215 (305)
137 TIGR01136 cysKM cysteine synth 63.3 1E+02 0.0023 28.0 10.9 124 53-203 71-201 (299)
138 PRK08745 ribulose-phosphate 3- 63.1 45 0.00097 29.7 8.1 102 7-125 113-220 (223)
139 PRK04539 ppnK inorganic polyph 63.1 7.2 0.00016 36.2 3.2 35 167-201 178-216 (296)
140 PLN02935 Bifunctional NADH kin 62.9 7 0.00015 39.0 3.2 36 166-201 376-415 (508)
141 TIGR03586 PseI pseudaminic aci 62.9 54 0.0012 30.9 9.0 68 16-103 97-166 (327)
142 PRK00043 thiE thiamine-phospha 62.3 57 0.0012 27.6 8.5 83 29-126 125-210 (212)
143 PRK03170 dihydrodipicolinate s 62.1 48 0.001 30.1 8.4 101 16-128 21-127 (292)
144 cd04740 DHOD_1B_like Dihydroor 62.0 78 0.0017 28.7 9.8 62 53-132 221-282 (296)
145 PRK02155 ppnK NAD(+)/NADH kina 61.9 7 0.00015 36.1 2.9 37 166-202 172-212 (291)
146 PLN02565 cysteine synthase 61.9 1E+02 0.0022 28.7 10.7 123 55-203 82-210 (322)
147 PF00582 Usp: Universal stress 61.6 27 0.00058 26.2 5.7 42 156-198 89-139 (140)
148 COG2870 RfaE ADP-heptose synth 61.5 16 0.00035 35.6 5.2 45 17-68 132-176 (467)
149 PRK07084 fructose-bisphosphate 61.4 16 0.00034 34.5 5.1 102 6-114 85-194 (321)
150 PF04009 DUF356: Protein of un 61.1 8.6 0.00019 30.4 2.8 51 168-218 55-106 (107)
151 PRK12857 fructose-1,6-bisphosp 61.0 21 0.00046 33.0 5.8 98 7-113 75-184 (284)
152 TIGR00196 yjeF_cterm yjeF C-te 60.6 13 0.00028 33.5 4.3 44 17-68 81-124 (272)
153 PRK12738 kbaY tagatose-bisphos 59.7 17 0.00036 33.7 4.9 104 6-113 74-184 (286)
154 PLN03013 cysteine synthase 59.7 1E+02 0.0022 30.3 10.5 124 54-203 189-318 (429)
155 TIGR02660 nifV_homocitr homoci 59.7 83 0.0018 29.8 9.8 154 44-217 43-214 (365)
156 PF04312 DUF460: Protein of un 59.2 9.5 0.00021 31.6 2.8 28 53-86 66-93 (138)
157 TIGR01137 cysta_beta cystathio 59.2 1.2E+02 0.0027 29.1 11.1 127 53-202 75-207 (454)
158 TIGR03569 NeuB_NnaB N-acetylne 59.1 76 0.0017 29.9 9.3 62 18-99 98-161 (329)
159 PRK07476 eutB threonine dehydr 59.1 1.2E+02 0.0025 28.1 10.5 120 53-202 80-204 (322)
160 cd00947 TBP_aldolase_IIB Tagat 59.0 41 0.00089 31.0 7.3 118 6-127 69-195 (276)
161 PRK02231 ppnK inorganic polyph 58.7 11 0.00023 34.7 3.4 36 167-202 153-192 (272)
162 PF01408 GFO_IDH_MocA: Oxidore 58.5 34 0.00074 26.1 5.9 57 19-95 51-110 (120)
163 PRK04180 pyridoxal biosynthesi 58.5 82 0.0018 29.4 9.1 44 88-132 132-175 (293)
164 cd00408 DHDPS-like Dihydrodipi 58.3 1.4E+02 0.003 26.7 12.0 100 16-127 17-122 (281)
165 TIGR01127 ilvA_1Cterm threonin 58.0 1E+02 0.0022 29.1 10.1 121 53-203 61-186 (380)
166 PLN02550 threonine dehydratase 57.9 1.2E+02 0.0026 31.0 11.0 120 54-203 171-296 (591)
167 PRK14075 pnk inorganic polypho 57.7 13 0.00028 33.7 3.8 35 167-201 143-181 (256)
168 COG3010 NanE Putative N-acetyl 57.6 97 0.0021 27.7 9.0 120 17-197 53-185 (229)
169 cd00429 RPE Ribulose-5-phospha 57.5 59 0.0013 27.4 7.7 88 18-120 117-210 (211)
170 PRK08638 threonine dehydratase 57.5 1.2E+02 0.0026 28.4 10.4 120 53-202 88-212 (333)
171 PRK05835 fructose-bisphosphate 57.3 30 0.00066 32.4 6.2 115 7-125 75-201 (307)
172 TIGR01037 pyrD_sub1_fam dihydr 57.2 1.3E+02 0.0028 27.4 10.3 107 6-132 157-285 (300)
173 PRK08639 threonine dehydratase 57.1 1.3E+02 0.0029 28.9 10.9 121 53-202 86-216 (420)
174 cd02810 DHOD_DHPD_FMN Dihydroo 57.0 1.2E+02 0.0025 27.4 10.0 94 6-107 98-199 (289)
175 PLN02591 tryptophan synthase 57.0 56 0.0012 29.6 7.7 73 19-105 144-219 (250)
176 PF01791 DeoC: DeoC/LacD famil 57.0 26 0.00057 30.8 5.6 97 19-127 79-188 (236)
177 PTZ00398 phosphoenolpyruvate c 56.9 21 0.00046 38.6 5.7 64 5-68 577-661 (974)
178 cd02811 IDI-2_FMN Isopentenyl- 56.8 82 0.0018 29.4 9.1 57 63-132 255-314 (326)
179 COG2022 ThiG Uncharacterized e 56.7 36 0.00077 30.9 6.2 77 29-123 152-230 (262)
180 PRK08610 fructose-bisphosphate 56.3 27 0.00059 32.3 5.7 113 7-124 78-199 (286)
181 PRK07998 gatY putative fructos 56.2 81 0.0018 29.2 8.8 67 48-129 59-126 (283)
182 PRK00009 phosphoenolpyruvate c 56.1 21 0.00046 38.2 5.6 63 6-68 522-604 (911)
183 PRK15005 universal stress prot 55.7 31 0.00067 27.1 5.3 40 158-198 96-143 (144)
184 cd00950 DHDPS Dihydrodipicolin 55.7 68 0.0015 28.9 8.2 98 21-128 26-126 (284)
185 PRK05458 guanosine 5'-monophos 55.6 70 0.0015 30.2 8.4 84 6-105 140-231 (326)
186 KOG3974 Predicted sugar kinase 55.2 55 0.0012 30.3 7.3 75 17-95 90-176 (306)
187 TIGR00007 phosphoribosylformim 55.1 1.4E+02 0.003 25.8 11.2 63 29-108 42-105 (230)
188 PRK08198 threonine dehydratase 54.9 1.8E+02 0.0039 27.7 11.3 121 53-203 83-208 (404)
189 TIGR02313 HpaI-NOT-DapA 2,4-di 54.9 1.1E+02 0.0024 28.0 9.5 99 17-127 21-125 (294)
190 PRK06843 inosine 5-monophospha 54.7 48 0.001 32.2 7.3 80 10-104 199-285 (404)
191 cd02810 DHOD_DHPD_FMN Dihydroo 54.7 50 0.0011 29.8 7.1 88 6-105 162-273 (289)
192 PRK13509 transcriptional repre 54.6 39 0.00084 30.3 6.3 63 154-220 80-142 (251)
193 TIGR02311 HpaI 2,4-dihydroxyhe 54.0 35 0.00075 30.7 5.9 58 29-104 34-91 (249)
194 PRK11761 cysM cysteine synthas 53.9 1.7E+02 0.0036 26.8 10.6 123 53-202 76-204 (296)
195 TIGR00736 nifR3_rel_arch TIM-b 53.6 1.7E+02 0.0036 26.2 11.6 110 43-177 48-169 (231)
196 cd01828 sialate_O-acetylestera 53.3 27 0.00059 28.3 4.8 54 17-70 36-94 (169)
197 cd00954 NAL N-Acetylneuraminic 53.2 1.8E+02 0.0038 26.4 11.2 96 20-127 25-126 (288)
198 TIGR03151 enACPred_II putative 53.2 88 0.0019 29.0 8.6 81 6-104 109-190 (307)
199 PRK07565 dihydroorotate dehydr 53.1 87 0.0019 29.2 8.7 89 6-106 101-199 (334)
200 PRK10558 alpha-dehydro-beta-de 53.0 35 0.00075 30.9 5.8 64 23-104 33-98 (256)
201 PRK10411 DNA-binding transcrip 52.8 45 0.00098 29.7 6.4 63 154-220 80-142 (240)
202 PRK01130 N-acetylmannosamine-6 52.8 79 0.0017 27.4 7.9 63 29-106 140-204 (221)
203 PRK09195 gatY tagatose-bisphos 52.8 35 0.00076 31.5 5.8 102 6-113 74-184 (284)
204 PRK11858 aksA trans-homoaconit 52.4 1.3E+02 0.0028 28.7 9.8 154 44-217 46-217 (378)
205 PRK10886 DnaA initiator-associ 52.4 1.6E+02 0.0034 25.6 11.8 93 155-253 25-144 (196)
206 PRK09140 2-dehydro-3-deoxy-6-p 52.3 1.3E+02 0.0029 26.1 9.2 113 42-199 40-158 (206)
207 PRK07259 dihydroorotate dehydr 52.2 1.5E+02 0.0032 27.0 9.9 63 52-132 223-285 (301)
208 PRK06382 threonine dehydratase 52.0 1.9E+02 0.004 27.8 10.9 120 54-203 87-211 (406)
209 PF00899 ThiF: ThiF family; I 51.9 37 0.0008 27.0 5.2 43 18-70 82-124 (135)
210 PF07905 PucR: Purine cataboli 51.8 78 0.0017 25.0 7.1 54 22-95 65-119 (123)
211 PF00682 HMGL-like: HMGL-like 51.8 1.1E+02 0.0024 26.5 8.7 112 46-180 104-216 (237)
212 PRK03378 ppnK inorganic polyph 51.7 17 0.00037 33.6 3.6 35 167-201 173-211 (292)
213 PRK09722 allulose-6-phosphate 51.6 90 0.002 27.9 8.1 104 7-127 111-222 (229)
214 CHL00200 trpA tryptophan synth 51.5 83 0.0018 28.7 8.0 76 18-105 156-232 (263)
215 PRK06806 fructose-bisphosphate 51.4 36 0.00077 31.4 5.6 102 6-113 74-182 (281)
216 COG2145 ThiM Hydroxyethylthiaz 51.3 29 0.00063 31.8 4.9 46 18-68 45-90 (265)
217 TIGR01858 tag_bisphos_ald clas 51.2 64 0.0014 29.8 7.3 109 7-124 73-196 (282)
218 cd05014 SIS_Kpsf KpsF-like pro 51.1 18 0.00039 28.1 3.2 32 170-202 48-84 (128)
219 cd04742 NPD_FabD 2-Nitropropan 50.5 1E+02 0.0022 30.2 8.9 63 29-104 178-248 (418)
220 cd05015 SIS_PGI_1 Phosphogluco 50.2 39 0.00084 28.0 5.2 52 169-220 73-137 (158)
221 PRK08526 threonine dehydratase 50.0 1.8E+02 0.004 28.0 10.5 121 53-203 81-206 (403)
222 TIGR03528 2_3_DAP_am_ly diamin 49.6 2E+02 0.0044 27.7 10.7 125 54-201 127-263 (396)
223 cd04739 DHOD_like Dihydroorota 49.5 1.5E+02 0.0033 27.6 9.6 91 6-107 99-198 (325)
224 PF07075 DUF1343: Protein of u 49.5 31 0.00067 33.1 5.0 75 23-117 73-149 (365)
225 cd04724 Tryptophan_synthase_al 49.4 1.1E+02 0.0024 27.2 8.4 53 6-68 76-134 (242)
226 TIGR02814 pfaD_fam PfaD family 49.3 1.3E+02 0.0028 29.7 9.4 85 7-104 136-253 (444)
227 PRK04147 N-acetylneuraminate l 49.3 1.3E+02 0.0028 27.4 9.0 101 16-128 23-130 (293)
228 COG1844 Uncharacterized protei 49.1 11 0.00024 30.4 1.6 70 151-220 38-109 (125)
229 PLN02727 NAD kinase 48.9 16 0.00034 39.2 3.2 82 166-253 859-951 (986)
230 cd01987 USP_OKCHK USP domain i 48.8 46 0.001 25.3 5.2 42 157-198 73-123 (124)
231 TIGR03239 GarL 2-dehydro-3-deo 48.8 44 0.00095 30.1 5.7 64 23-104 26-91 (249)
232 cd02940 DHPD_FMN Dihydropyrimi 48.7 1.7E+02 0.0037 26.7 9.8 88 6-105 99-201 (299)
233 TIGR00260 thrC threonine synth 48.5 1.7E+02 0.0036 26.9 9.7 83 153-238 54-141 (328)
234 TIGR02356 adenyl_thiF thiazole 48.4 58 0.0013 28.1 6.3 41 20-70 103-143 (202)
235 PRK06015 keto-hydroxyglutarate 48.3 45 0.00097 29.3 5.5 75 14-105 38-125 (201)
236 PLN02334 ribulose-phosphate 3- 48.1 1.4E+02 0.0029 26.2 8.7 95 18-127 127-225 (229)
237 PRK07591 threonine synthase; V 48.1 2.1E+02 0.0045 27.7 10.6 121 53-202 150-284 (421)
238 cd05008 SIS_GlmS_GlmD_1 SIS (S 47.9 18 0.00038 28.1 2.7 34 169-203 46-84 (126)
239 PF01513 NAD_kinase: ATP-NAD k 47.7 13 0.00028 33.9 2.2 35 166-200 187-225 (285)
240 PRK14076 pnk inorganic polypho 47.6 17 0.00036 36.8 3.1 35 166-200 457-495 (569)
241 cd07939 DRE_TIM_NifV Streptomy 47.5 87 0.0019 28.0 7.5 73 46-125 106-179 (259)
242 PF03437 BtpA: BtpA family; I 47.5 43 0.00093 30.5 5.4 40 87-129 32-77 (254)
243 PRK12737 gatY tagatose-bisphos 47.4 56 0.0012 30.2 6.3 99 7-114 75-185 (284)
244 PRK08197 threonine synthase; V 47.4 1.8E+02 0.0039 27.7 10.0 70 150-220 107-180 (394)
245 PRK02083 imidazole glycerol ph 47.1 2E+02 0.0044 25.4 12.3 198 20-241 30-249 (253)
246 PLN02929 NADH kinase 47.1 19 0.00041 33.7 3.1 35 166-200 192-233 (301)
247 PF09547 Spore_IV_A: Stage IV 46.9 52 0.0011 32.6 6.1 66 31-103 148-213 (492)
248 PRK05638 threonine synthase; V 46.9 1.4E+02 0.003 29.0 9.3 118 53-200 125-252 (442)
249 PLN02645 phosphoglycolate phos 46.8 52 0.0011 30.3 6.1 69 4-88 3-78 (311)
250 TIGR01949 AroFGH_arch predicte 46.6 63 0.0014 28.9 6.4 80 20-104 94-176 (258)
251 PRK09355 hydroxyethylthiazole 46.5 38 0.00082 30.5 4.9 44 20-68 46-89 (263)
252 TIGR02079 THD1 threonine dehyd 46.3 2.3E+02 0.005 27.3 10.6 121 53-202 77-205 (409)
253 TIGR01163 rpe ribulose-phospha 46.3 1.2E+02 0.0025 25.7 7.8 94 13-119 111-208 (210)
254 CHL00162 thiG thiamin biosynth 46.1 31 0.00067 31.6 4.2 79 29-123 159-237 (267)
255 PRK05581 ribulose-phosphate 3- 46.1 1.4E+02 0.0031 25.4 8.4 93 18-123 121-217 (220)
256 PRK13398 3-deoxy-7-phosphohept 46.1 2.3E+02 0.0051 25.8 12.9 90 7-119 92-185 (266)
257 PRK06381 threonine synthase; V 46.0 1.9E+02 0.004 26.6 9.6 88 150-240 43-134 (319)
258 cd05710 SIS_1 A subgroup of th 45.8 20 0.00043 28.1 2.7 33 170-203 48-85 (120)
259 cd02922 FCB2_FMN Flavocytochro 45.3 1E+02 0.0022 29.2 7.8 81 6-104 213-300 (344)
260 COG1105 FruK Fructose-1-phosph 45.3 81 0.0017 29.6 7.0 59 29-92 130-194 (310)
261 cd04738 DHOD_2_like Dihydrooro 45.1 97 0.0021 28.9 7.6 90 6-107 202-312 (327)
262 PRK07048 serine/threonine dehy 44.7 1.8E+02 0.0039 26.8 9.3 121 53-203 85-210 (321)
263 PRK03620 5-dehydro-4-deoxygluc 44.6 1.9E+02 0.0042 26.5 9.4 99 17-128 28-132 (303)
264 PLN02746 hydroxymethylglutaryl 44.3 74 0.0016 30.3 6.7 76 45-125 157-237 (347)
265 PF08541 ACP_syn_III_C: 3-Oxoa 44.3 25 0.00055 25.8 2.9 24 230-253 54-77 (90)
266 cd00564 TMP_TenI Thiamine mono 44.3 1.1E+02 0.0024 25.1 7.2 76 29-120 116-194 (196)
267 cd04727 pdxS PdxS is a subunit 44.1 2.7E+02 0.0058 25.9 10.2 44 88-132 123-166 (283)
268 PF01116 F_bP_aldolase: Fructo 43.9 68 0.0015 29.6 6.3 118 6-127 73-203 (287)
269 TIGR03609 S_layer_CsaB polysac 43.9 64 0.0014 29.1 6.1 69 28-103 64-133 (298)
270 PRK15456 universal stress prot 43.6 56 0.0012 25.7 5.1 38 160-198 96-141 (142)
271 KOG0925 mRNA splicing factor A 43.6 46 0.001 33.6 5.3 66 184-253 183-262 (699)
272 PLN02417 dihydrodipicolinate s 43.6 1.9E+02 0.0041 26.3 9.1 99 17-127 22-126 (280)
273 KOG2683 Sirtuin 4 and related 43.5 54 0.0012 30.0 5.3 55 15-86 233-287 (305)
274 TIGR00853 pts-lac PTS system, 43.4 42 0.00092 25.6 4.1 40 19-68 41-80 (95)
275 TIGR03128 RuMP_HxlA 3-hexulose 43.4 35 0.00076 29.1 4.1 45 51-105 90-134 (206)
276 TIGR03249 KdgD 5-dehydro-4-deo 43.4 1.9E+02 0.0042 26.3 9.2 100 16-127 25-129 (296)
277 smart00870 Asparaginase Aspara 43.3 38 0.00083 31.6 4.6 48 22-75 228-276 (323)
278 TIGR01124 ilvA_2Cterm threonin 43.2 2.8E+02 0.0061 27.6 10.9 121 53-203 78-204 (499)
279 PRK05286 dihydroorotate dehydr 43.1 2.9E+02 0.0062 25.9 13.7 115 48-179 124-248 (344)
280 TIGR00259 thylakoid_BtpA membr 43.1 55 0.0012 29.9 5.4 39 88-129 32-76 (257)
281 cd04732 HisA HisA. Phosphorib 43.1 1.5E+02 0.0032 25.6 8.1 87 17-126 30-118 (234)
282 PF01113 DapB_N: Dihydrodipico 42.9 39 0.00084 26.8 4.0 40 20-70 59-98 (124)
283 cd01822 Lysophospholipase_L1_l 42.8 52 0.0011 26.6 4.9 56 15-70 49-108 (177)
284 PLN00011 cysteine synthase 42.7 2.8E+02 0.006 25.7 11.4 125 53-203 82-212 (323)
285 PF03060 NMO: Nitronate monoox 42.2 81 0.0018 29.4 6.6 81 6-104 136-219 (330)
286 TIGR02355 moeB molybdopterin s 42.2 79 0.0017 28.2 6.3 41 20-70 106-146 (240)
287 TIGR00167 cbbA ketose-bisphosp 42.0 92 0.002 28.8 6.8 108 7-123 78-201 (288)
288 PRK08674 bifunctional phosphog 42.0 71 0.0015 29.8 6.2 50 169-220 78-132 (337)
289 PRK03910 D-cysteine desulfhydr 41.6 1.8E+02 0.004 26.9 8.9 42 161-202 170-220 (331)
290 cd01171 YXKO-related B.subtili 41.5 70 0.0015 28.1 5.9 38 23-68 72-109 (254)
291 COG0031 CysK Cysteine synthase 41.5 3E+02 0.0066 25.7 13.1 207 7-241 26-260 (300)
292 PF14010 PEPcase_2: Phosphoeno 41.3 14 0.0003 36.8 1.4 63 5-67 168-244 (491)
293 cd03332 LMO_FMN L-Lactate 2-mo 41.3 98 0.0021 29.9 7.1 82 6-105 253-338 (383)
294 COG0167 PyrD Dihydroorotate de 40.9 59 0.0013 30.5 5.4 54 48-111 145-200 (310)
295 PRK09461 ansA cytoplasmic aspa 40.8 48 0.001 31.2 4.8 47 22-74 226-275 (335)
296 PF13344 Hydrolase_6: Haloacid 40.7 37 0.0008 26.0 3.4 38 53-99 20-57 (101)
297 PRK13125 trpA tryptophan synth 40.7 1E+02 0.0022 27.4 6.7 69 18-104 141-214 (244)
298 PRK06835 DNA replication prote 40.6 61 0.0013 30.5 5.5 43 28-72 246-288 (329)
299 TIGR03127 RuMP_HxlB 6-phospho 40.6 28 0.00061 29.0 3.0 32 170-202 73-109 (179)
300 PRK06110 hypothetical protein; 40.6 2.7E+02 0.0059 25.6 9.9 118 54-202 84-206 (322)
301 PLN02826 dihydroorotate dehydr 40.3 1.4E+02 0.0031 29.0 8.1 109 6-132 262-393 (409)
302 TIGR01182 eda Entner-Doudoroff 40.3 75 0.0016 27.9 5.7 75 14-105 42-129 (204)
303 COG1831 Predicted metal-depend 40.3 39 0.00084 31.2 3.9 116 47-188 58-178 (285)
304 COG0673 MviM Predicted dehydro 40.2 71 0.0015 29.0 5.9 87 17-127 54-143 (342)
305 TIGR03844 cysteate_syn cysteat 40.2 3.1E+02 0.0068 26.4 10.5 89 150-241 97-189 (398)
306 cd01492 Aos1_SUMO Ubiquitin ac 40.2 1.1E+02 0.0024 26.3 6.7 41 20-70 102-142 (197)
307 PF03644 Glyco_hydro_85: Glyco 40.0 42 0.00091 31.3 4.3 74 54-129 46-133 (311)
308 PF01380 SIS: SIS domain SIS d 39.8 28 0.00061 26.8 2.7 32 170-201 54-89 (131)
309 TIGR00259 thylakoid_BtpA membr 39.7 3E+02 0.0064 25.1 11.6 174 18-216 30-226 (257)
310 cd04737 LOX_like_FMN L-Lactate 39.7 1.1E+02 0.0023 29.2 7.0 81 6-105 221-306 (351)
311 TIGR02991 ectoine_eutB ectoine 39.5 3.1E+02 0.0067 25.3 10.9 119 53-201 80-203 (317)
312 PF05991 NYN_YacP: YacP-like N 39.4 47 0.001 28.0 4.1 49 171-220 67-121 (166)
313 TIGR00520 asnASE_II L-asparagi 39.4 44 0.00095 31.8 4.4 47 22-74 255-302 (349)
314 PRK15116 sulfur acceptor prote 39.3 25 0.00055 32.2 2.7 61 19-93 111-172 (268)
315 TIGR00735 hisF imidazoleglycer 39.2 2.8E+02 0.006 24.6 13.8 187 29-241 44-251 (254)
316 cd05005 SIS_PHI Hexulose-6-pho 39.1 31 0.00067 28.9 3.0 33 169-202 75-112 (179)
317 cd00946 FBP_aldolase_IIA Class 39.0 39 0.00085 32.2 4.0 81 29-113 124-216 (345)
318 cd00945 Aldolase_Class_I Class 38.9 1.5E+02 0.0032 24.3 7.2 89 6-104 48-149 (201)
319 PRK11096 ansB L-asparaginase I 38.8 46 0.001 31.6 4.4 49 22-76 249-298 (347)
320 TIGR02708 L_lactate_ox L-lacta 38.7 97 0.0021 29.8 6.6 20 87-106 295-314 (367)
321 cd01485 E1-1_like Ubiquitin ac 38.6 1.1E+02 0.0024 26.3 6.5 57 4-70 88-145 (198)
322 cd01830 XynE_like SGNH_hydrola 38.5 33 0.00071 29.1 3.1 55 16-70 59-126 (204)
323 PF00455 DeoRC: DeoR C termina 38.5 73 0.0016 26.5 5.2 61 155-219 7-68 (161)
324 cd05013 SIS_RpiR RpiR-like pro 38.4 33 0.00072 26.4 2.9 34 169-203 60-98 (139)
325 PRK08329 threonine synthase; V 38.4 1.4E+02 0.0031 28.0 7.7 51 150-201 84-136 (347)
326 PRK10128 2-keto-3-deoxy-L-rham 38.4 86 0.0019 28.7 6.0 64 23-104 32-97 (267)
327 cd06448 L-Ser-dehyd Serine deh 38.2 2.9E+02 0.0064 25.4 9.7 123 53-203 64-195 (316)
328 cd04722 TIM_phosphate_binding 38.1 1.6E+02 0.0035 23.7 7.2 85 6-104 114-199 (200)
329 TIGR00045 glycerate kinase. Th 38.1 62 0.0013 31.2 5.2 58 9-69 264-321 (375)
330 TIGR01520 FruBisAldo_II_A fruc 37.9 58 0.0013 31.2 4.9 76 29-113 136-228 (357)
331 PF02698 DUF218: DUF218 domain 37.9 86 0.0019 25.2 5.4 49 201-253 55-106 (155)
332 PRK09532 DNA polymerase III su 37.8 70 0.0015 34.3 6.0 42 52-98 187-228 (874)
333 PRK13982 bifunctional SbtC-lik 37.5 2.6E+02 0.0056 27.8 9.5 182 12-250 193-418 (475)
334 PRK09196 fructose-1,6-bisphosp 37.4 68 0.0015 30.6 5.3 107 7-113 76-202 (347)
335 PLN02858 fructose-bisphosphate 37.2 49 0.0011 37.2 4.9 103 6-114 1169-1280(1378)
336 PF02110 HK: Hydroxyethylthiaz 37.1 61 0.0013 29.4 4.7 45 19-68 40-84 (246)
337 PRK08206 diaminopropionate amm 37.1 3.2E+02 0.0069 26.2 10.0 126 54-202 130-266 (399)
338 TIGR00441 gmhA phosphoheptose 37.0 32 0.00069 28.3 2.7 33 169-202 79-116 (154)
339 COG1929 Glycerate kinase [Carb 36.6 50 0.0011 31.7 4.2 59 8-69 264-322 (378)
340 PF03437 BtpA: BtpA family; I 36.5 3.3E+02 0.0072 24.8 13.0 174 18-216 31-226 (254)
341 cd00411 Asparaginase Asparagin 36.4 55 0.0012 30.6 4.5 48 22-75 226-274 (323)
342 TIGR00694 thiM hydroxyethylthi 36.3 60 0.0013 29.0 4.6 44 20-68 41-84 (249)
343 COG1099 Predicted metal-depend 36.1 97 0.0021 28.1 5.7 62 16-88 82-143 (254)
344 PRK15118 universal stress glob 36.1 1E+02 0.0022 24.1 5.5 39 160-199 94-138 (144)
345 PRK00125 pyrF orotidine 5'-pho 35.9 1.8E+02 0.0038 26.8 7.6 124 51-197 74-217 (278)
346 PRK08246 threonine dehydratase 35.7 3.5E+02 0.0076 24.8 10.8 123 50-202 78-202 (310)
347 TIGR02127 pyrF_sub2 orotidine 35.7 81 0.0018 28.7 5.4 22 47-68 70-91 (261)
348 PRK06260 threonine synthase; V 35.5 3.1E+02 0.0068 26.1 9.6 70 150-220 95-169 (397)
349 COG1839 Uncharacterized conser 35.4 2.7E+02 0.0059 23.4 8.2 130 109-241 22-160 (162)
350 PRK08649 inosine 5-monophospha 35.4 1.5E+02 0.0033 28.4 7.3 82 9-106 134-217 (368)
351 PRK10528 multifunctional acyl- 35.4 87 0.0019 26.3 5.2 54 15-68 56-113 (191)
352 PRK12858 tagatose 1,6-diphosph 35.3 4E+02 0.0086 25.3 14.4 99 16-130 45-155 (340)
353 PRK05718 keto-hydroxyglutarate 35.2 77 0.0017 27.9 5.0 77 13-103 48-134 (212)
354 PRK08644 thiamine biosynthesis 34.9 1.2E+02 0.0026 26.4 6.2 54 6-70 96-150 (212)
355 TIGR00519 asnASE_I L-asparagin 34.9 58 0.0012 30.7 4.4 48 22-75 228-276 (336)
356 PRK13111 trpA tryptophan synth 34.6 2.7E+02 0.0058 25.2 8.5 42 17-68 104-147 (258)
357 cd07937 DRE_TIM_PC_TC_5S Pyruv 34.5 1.5E+02 0.0034 26.8 7.0 71 51-126 119-190 (275)
358 PRK13399 fructose-1,6-bisphosp 34.2 1.1E+02 0.0023 29.2 6.1 107 7-113 76-202 (347)
359 PRK11366 puuD gamma-glutamyl-g 34.2 1E+02 0.0022 27.7 5.7 51 20-70 53-114 (254)
360 cd00757 ThiF_MoeB_HesA_family 34.2 1.3E+02 0.0028 26.3 6.3 41 19-69 102-142 (228)
361 COG1879 RbsB ABC-type sugar tr 34.1 73 0.0016 28.8 4.9 42 17-68 79-121 (322)
362 PRK10342 glycerate kinase I; P 33.8 80 0.0017 30.5 5.2 58 9-69 265-322 (381)
363 cd08556 GDPD Glycerophosphodie 33.8 52 0.0011 27.0 3.6 41 50-103 147-187 (189)
364 PRK15452 putative protease; Pr 33.7 4.3E+02 0.0092 26.0 10.3 126 89-228 15-149 (443)
365 TIGR00126 deoC deoxyribose-pho 33.6 3.2E+02 0.007 24.0 8.7 102 82-197 68-180 (211)
366 cd04726 KGPDC_HPS 3-Keto-L-gul 33.5 57 0.0012 27.5 3.8 44 50-104 90-133 (202)
367 PF02603 Hpr_kinase_N: HPr Ser 33.3 44 0.00096 26.8 2.9 53 6-69 50-111 (127)
368 PRK14057 epimerase; Provisiona 33.3 2.4E+02 0.0052 25.7 7.9 101 7-124 135-241 (254)
369 cd06557 KPHMT-like Ketopantoat 33.0 1.5E+02 0.0034 26.8 6.7 76 16-103 90-177 (254)
370 PRK07107 inosine 5-monophospha 33.0 3.2E+02 0.0069 27.3 9.4 100 4-123 229-341 (502)
371 TIGR02090 LEU1_arch isopropylm 32.9 4.3E+02 0.0093 25.0 10.5 74 45-125 107-181 (363)
372 PF13241 NAD_binding_7: Putati 32.6 36 0.00078 26.0 2.2 35 26-70 58-92 (103)
373 cd06259 YdcF-like YdcF-like. Y 32.4 2.1E+02 0.0046 22.7 6.9 49 201-253 52-103 (150)
374 cd00755 YgdL_like Family of ac 32.3 42 0.00091 29.9 2.9 60 20-93 93-153 (231)
375 PF05368 NmrA: NmrA-like famil 32.0 1.1E+02 0.0024 26.1 5.5 47 22-73 58-104 (233)
376 cd00640 Trp-synth-beta_II Tryp 32.0 3.4E+02 0.0074 23.5 9.2 69 151-220 28-103 (244)
377 cd01487 E1_ThiF_like E1_ThiF_l 31.9 1.5E+02 0.0033 24.9 6.1 41 20-70 80-121 (174)
378 COG3707 AmiR Response regulato 31.9 2.5E+02 0.0054 24.6 7.4 85 15-119 36-121 (194)
379 PF00290 Trp_syntA: Tryptophan 31.9 1.7E+02 0.0037 26.7 6.8 78 15-105 149-227 (259)
380 PRK06552 keto-hydroxyglutarate 31.7 59 0.0013 28.6 3.7 72 15-103 48-135 (213)
381 cd08563 GDPD_TtGDE_like Glycer 31.5 57 0.0012 28.3 3.6 41 50-103 187-227 (230)
382 TIGR00036 dapB dihydrodipicoli 31.5 2.1E+02 0.0046 25.8 7.4 69 48-131 77-145 (266)
383 cd04738 DHOD_2_like Dihydrooro 31.4 4.3E+02 0.0093 24.5 14.5 113 48-178 114-238 (327)
384 PRK05690 molybdopterin biosynt 31.1 1.4E+02 0.003 26.6 6.1 40 20-69 114-153 (245)
385 COG0794 GutQ Predicted sugar p 31.1 45 0.00098 29.4 2.8 55 30-91 80-134 (202)
386 PF01915 Glyco_hydro_3_C: Glyc 31.0 42 0.0009 29.2 2.6 79 15-106 72-161 (227)
387 PRK10206 putative oxidoreducta 31.0 1.5E+02 0.0032 27.7 6.5 85 18-126 52-139 (344)
388 PRK04302 triosephosphate isome 30.9 3.3E+02 0.0071 23.7 8.3 89 20-120 125-218 (223)
389 TIGR01747 diampropi_NH3ly diam 30.8 4.8E+02 0.01 24.9 11.1 127 53-202 107-245 (376)
390 PRK08227 autoinducer 2 aldolas 30.8 1.3E+02 0.0029 27.5 5.9 67 50-126 182-248 (264)
391 PRK10100 DNA-binding transcrip 30.7 1.5E+02 0.0032 25.9 6.1 65 170-236 53-124 (216)
392 PRK00414 gmhA phosphoheptose i 30.7 54 0.0012 28.1 3.2 33 169-202 111-148 (192)
393 cd05565 PTS_IIB_lactose PTS_II 30.6 91 0.002 24.2 4.1 41 18-68 37-77 (99)
394 TIGR00343 pyridoxal 5'-phospha 30.4 4.5E+02 0.0098 24.5 9.9 41 88-129 125-165 (287)
395 PF13407 Peripla_BP_4: Peripla 30.1 57 0.0012 28.0 3.3 44 16-69 42-86 (257)
396 PF13580 SIS_2: SIS domain; PD 30.1 2.9E+02 0.0062 22.1 7.7 48 155-202 19-77 (138)
397 PRK06801 hypothetical protein; 30.1 3E+02 0.0065 25.4 8.2 79 32-129 47-126 (286)
398 cd07948 DRE_TIM_HCS Saccharomy 30.1 2.1E+02 0.0047 25.8 7.2 72 46-124 108-180 (262)
399 PRK13602 putative ribosomal pr 30.0 89 0.0019 23.2 3.9 19 50-68 40-58 (82)
400 TIGR02153 gatD_arch glutamyl-t 30.0 79 0.0017 30.7 4.5 48 22-75 292-340 (404)
401 TIGR01306 GMP_reduct_2 guanosi 29.9 1.1E+02 0.0024 28.8 5.4 61 49-121 68-132 (321)
402 PF00710 Asparaginase: Asparag 29.9 66 0.0014 29.9 3.9 51 21-77 217-267 (313)
403 PRK07259 dihydroorotate dehydr 29.8 2.4E+02 0.0052 25.6 7.5 87 6-106 91-191 (301)
404 PRK12339 2-phosphoglycerate ki 29.7 45 0.00097 28.9 2.5 31 46-76 158-188 (197)
405 KOG2550 IMP dehydrogenase/GMP 29.7 81 0.0018 31.0 4.4 73 21-105 305-384 (503)
406 cd01170 THZ_kinase 4-methyl-5- 29.6 1.2E+02 0.0026 26.9 5.4 51 18-73 39-89 (242)
407 PRK11858 aksA trans-homoaconit 29.6 5E+02 0.011 24.7 10.8 74 46-126 112-186 (378)
408 PTZ00170 D-ribulose-5-phosphat 29.5 2.3E+02 0.0049 25.0 7.1 93 17-126 125-223 (228)
409 PF00072 Response_reg: Respons 29.5 2.2E+02 0.0048 20.6 7.6 63 160-222 34-102 (112)
410 PF03932 CutC: CutC family; I 29.4 1.8E+02 0.004 25.4 6.3 58 60-125 47-113 (201)
411 cd07940 DRE_TIM_IPMS 2-isoprop 29.4 2.5E+02 0.0055 25.1 7.5 73 46-125 110-183 (268)
412 PF02254 TrkA_N: TrkA-N domain 29.3 1.3E+02 0.0029 22.6 5.0 52 165-217 58-113 (116)
413 COG1445 FrwB Phosphotransferas 29.3 35 0.00076 27.7 1.7 44 9-68 33-81 (122)
414 PLN02979 glycolate oxidase 29.3 2.2E+02 0.0047 27.4 7.3 83 6-105 223-308 (366)
415 PRK00048 dihydrodipicolinate r 29.3 95 0.0021 27.8 4.7 73 19-113 51-123 (257)
416 PLN02826 dihydroorotate dehydr 29.2 2.8E+02 0.006 27.0 8.1 37 63-107 262-299 (409)
417 cd07941 DRE_TIM_LeuA3 Desulfob 29.2 2.4E+02 0.0053 25.4 7.4 75 46-125 115-191 (273)
418 PRK06920 dnaE DNA polymerase I 29.2 1.7E+02 0.0038 32.2 7.3 44 50-98 171-214 (1107)
419 TIGR00679 hpr-ser Hpr(Ser) kin 29.2 55 0.0012 30.6 3.2 100 4-121 49-168 (304)
420 cd04725 OMP_decarboxylase_like 29.2 2.3E+02 0.0049 24.7 6.9 120 41-180 27-153 (216)
421 PLN02556 cysteine synthase/L-3 28.9 5.1E+02 0.011 24.6 11.0 124 54-203 125-254 (368)
422 PRK06512 thiamine-phosphate py 28.9 2.5E+02 0.0053 24.8 7.1 82 29-125 132-213 (221)
423 cd06279 PBP1_LacI_like_3 Ligan 28.8 2.1E+02 0.0045 25.0 6.8 59 36-106 7-65 (283)
424 PF01207 Dus: Dihydrouridine s 28.8 22 0.00048 32.9 0.5 20 20-39 196-217 (309)
425 COG0042 tRNA-dihydrouridine sy 28.6 32 0.0007 32.2 1.5 23 18-40 209-233 (323)
426 cd02911 arch_FMN Archeal FMN-b 28.6 1.8E+02 0.0039 25.8 6.3 80 6-106 139-222 (233)
427 PRK11579 putative oxidoreducta 28.6 1.7E+02 0.0037 27.0 6.5 85 18-126 52-139 (346)
428 TIGR01305 GMP_reduct_1 guanosi 28.5 4.1E+02 0.009 25.4 8.9 70 15-104 105-178 (343)
429 COG0794 GutQ Predicted sugar p 28.5 68 0.0015 28.3 3.5 35 170-204 87-125 (202)
430 PRK11543 gutQ D-arabinose 5-ph 28.4 51 0.0011 30.1 2.8 33 169-202 89-126 (321)
431 TIGR01036 pyrD_sub2 dihydrooro 28.2 1.2E+02 0.0025 28.6 5.2 52 48-107 187-247 (335)
432 PF03796 DnaB_C: DnaB-like hel 28.2 45 0.00098 29.5 2.4 75 29-104 131-212 (259)
433 PRK12281 rplX 50S ribosomal pr 28.1 41 0.00089 24.9 1.7 13 241-253 6-18 (76)
434 PRK08195 4-hyroxy-2-oxovalerat 28.1 2.3E+02 0.005 26.6 7.2 68 51-125 116-184 (337)
435 COG0289 DapB Dihydrodipicolina 28.1 4.2E+02 0.009 24.4 8.5 69 47-132 77-145 (266)
436 PLN02591 tryptophan synthase 28.0 4.1E+02 0.0089 24.0 8.6 42 17-68 93-136 (250)
437 cd07944 DRE_TIM_HOA_like 4-hyd 28.0 2.9E+02 0.0064 24.9 7.7 71 48-125 107-178 (266)
438 COG2070 Dioxygenases related t 28.0 1.2E+02 0.0025 28.7 5.2 62 29-104 148-213 (336)
439 TIGR01521 FruBisAldo_II_B fruc 28.0 1.3E+02 0.0029 28.7 5.5 103 7-114 74-201 (347)
440 PRK00043 thiE thiamine-phospha 28.0 3.4E+02 0.0074 22.8 7.8 67 18-106 23-90 (212)
441 cd02809 alpha_hydroxyacid_oxid 27.9 2.4E+02 0.0052 25.8 7.2 81 7-105 173-257 (299)
442 cd08555 PI-PLCc_GDPD_SF Cataly 27.8 99 0.0021 25.8 4.3 41 50-102 136-176 (179)
443 PRK05638 threonine synthase; V 27.8 5.6E+02 0.012 24.8 10.1 86 150-238 92-181 (442)
444 PRK15098 beta-D-glucoside gluc 27.8 1.1E+02 0.0024 32.1 5.5 50 19-68 492-547 (765)
445 cd01563 Thr-synth_1 Threonine 27.8 4.7E+02 0.01 23.8 10.6 118 54-202 84-214 (324)
446 PRK10886 DnaA initiator-associ 27.7 1E+02 0.0022 26.8 4.4 33 169-202 109-146 (196)
447 PRK13938 phosphoheptose isomer 27.5 55 0.0012 28.4 2.7 33 171-203 115-151 (196)
448 PF01884 PcrB: PcrB family; I 27.5 22 0.00047 32.0 0.2 162 29-219 33-210 (230)
449 PF13727 CoA_binding_3: CoA-bi 27.4 1.1E+02 0.0025 24.4 4.5 45 16-68 127-173 (175)
450 KOG2335 tRNA-dihydrouridine sy 27.3 36 0.00078 32.6 1.6 46 18-65 214-269 (358)
451 TIGR02090 LEU1_arch isopropylm 27.2 5.4E+02 0.012 24.3 10.3 122 87-217 74-213 (363)
452 PF00532 Peripla_BP_1: Peripla 27.1 4.1E+02 0.0089 23.7 8.5 81 160-253 47-127 (279)
453 cd08567 GDPD_SpGDE_like Glycer 27.0 1.7E+02 0.0037 25.7 5.9 45 46-103 214-258 (263)
454 TIGR02690 resist_ArsH arsenica 27.0 1.3E+02 0.0029 26.7 5.1 50 16-70 78-135 (219)
455 TIGR00737 nifR3_yhdG putative 27.0 2.1E+02 0.0045 26.4 6.6 83 7-104 132-222 (319)
456 PRK02615 thiamine-phosphate py 26.9 2E+02 0.0044 27.3 6.6 92 20-125 248-343 (347)
457 cd04736 MDH_FMN Mandelate dehy 26.9 1.9E+02 0.004 27.8 6.4 38 59-108 285-322 (361)
458 cd06318 PBP1_ABC_sugar_binding 26.9 1.3E+02 0.0027 26.1 5.0 43 19-71 45-88 (282)
459 PF01274 Malate_synthase: Mala 26.8 1E+02 0.0022 31.1 4.8 97 5-104 237-364 (526)
460 PRK09456 ?-D-glucose-1-phospha 26.8 1.1E+02 0.0023 25.8 4.4 52 53-111 90-141 (199)
461 PRK08116 hypothetical protein; 26.8 1.5E+02 0.0032 26.9 5.5 42 28-71 178-219 (268)
462 TIGR00973 leuA_bact 2-isopropy 26.7 2E+02 0.0043 28.6 6.8 71 46-126 113-187 (494)
463 TIGR00262 trpA tryptophan synt 26.6 4.5E+02 0.0098 23.6 8.6 88 17-123 102-193 (256)
464 PRK05458 guanosine 5'-monophos 26.5 4.5E+02 0.0097 24.8 8.8 69 16-104 96-168 (326)
465 cd03309 CmuC_like CmuC_like. P 26.4 1.6E+02 0.0034 27.6 5.7 48 20-68 159-217 (321)
466 PRK11572 copper homeostasis pr 26.3 2.2E+02 0.0047 25.9 6.4 56 61-124 49-113 (248)
467 cd07945 DRE_TIM_CMS Leptospira 26.3 5E+02 0.011 23.7 10.2 115 46-181 111-227 (280)
468 cd04740 DHOD_1B_like Dihydroor 26.2 1.3E+02 0.0028 27.3 5.0 89 6-106 89-188 (296)
469 PRK06806 fructose-bisphosphate 26.2 2.3E+02 0.005 26.0 6.7 50 48-108 59-108 (281)
470 cd01741 GATase1_1 Subgroup of 26.2 1.4E+02 0.003 24.9 4.9 43 26-68 44-86 (188)
471 PRK15408 autoinducer 2-binding 26.2 1.3E+02 0.0029 27.9 5.2 41 19-69 70-111 (336)
472 PRK12608 transcription termina 26.2 1.3E+02 0.0027 29.2 5.1 64 48-128 204-267 (380)
473 PF11017 DUF2855: Protein of u 26.2 95 0.0021 29.2 4.2 50 167-216 133-188 (314)
474 cd00331 IGPS Indole-3-glycerol 26.1 2.9E+02 0.0062 23.7 7.0 82 21-118 133-215 (217)
475 PF03841 SelA: L-seryl-tRNA se 25.9 43 0.00093 32.2 1.9 56 53-111 160-217 (367)
476 TIGR02660 nifV_homocitr homoci 25.8 2.2E+02 0.0047 27.0 6.7 74 46-126 109-183 (365)
477 smart00475 53EXOc 5'-3' exonuc 25.7 3.9E+02 0.0085 24.1 8.0 101 152-259 31-137 (259)
478 PRK09590 celB cellobiose phosp 25.7 1.8E+02 0.0038 22.7 5.0 54 19-86 39-94 (104)
479 cd01820 PAF_acetylesterase_lik 25.7 80 0.0017 26.9 3.4 39 31-69 94-134 (214)
480 PRK06683 hypothetical protein; 25.5 1.2E+02 0.0026 22.5 3.9 19 50-68 40-58 (82)
481 cd06523 GH25_PlyB-like PlyB is 25.4 1E+02 0.0022 26.0 3.9 85 29-129 23-112 (177)
482 PRK08328 hypothetical protein; 25.4 2.1E+02 0.0045 25.2 6.1 55 4-69 95-149 (231)
483 PRK00915 2-isopropylmalate syn 25.4 2.3E+02 0.0049 28.3 6.9 85 32-126 98-190 (513)
484 TIGR02130 dapB_plant dihydrodi 25.3 1.4E+02 0.003 27.5 5.1 66 48-131 78-143 (275)
485 COG2222 AgaS Predicted phospho 25.3 1.1E+02 0.0023 29.1 4.4 48 171-219 89-140 (340)
486 TIGR00736 nifR3_rel_arch TIM-b 25.2 3.3E+02 0.0072 24.3 7.3 81 6-105 134-221 (231)
487 PRK05692 hydroxymethylglutaryl 25.2 2.7E+02 0.0059 25.5 7.0 76 46-125 116-195 (287)
488 PRK09140 2-dehydro-3-deoxy-6-p 25.2 68 0.0015 28.0 2.9 75 15-103 45-130 (206)
489 smart00739 KOW KOW (Kyprides, 25.0 62 0.0014 18.1 1.8 12 242-253 2-13 (28)
490 cd00951 KDGDH 5-dehydro-4-deox 25.0 5.2E+02 0.011 23.4 9.0 100 16-127 20-124 (289)
491 cd05006 SIS_GmhA Phosphoheptos 25.0 1.5E+02 0.0033 24.5 4.9 33 169-202 101-138 (177)
492 cd04726 KGPDC_HPS 3-Keto-L-gul 24.9 4E+02 0.0086 22.2 7.6 78 25-118 122-200 (202)
493 cd00958 DhnA Class I fructose- 24.9 2.2E+02 0.0047 24.8 6.1 38 87-124 197-234 (235)
494 PRK10017 colanic acid biosynth 24.9 3E+02 0.0065 26.8 7.6 71 21-103 110-182 (426)
495 PRK13601 putative L7Ae-like ri 24.9 1.3E+02 0.0029 22.4 4.0 20 49-68 36-55 (82)
496 CHL00200 trpA tryptophan synth 24.9 4.1E+02 0.009 24.1 8.1 42 17-68 106-149 (263)
497 PRK04183 glutamyl-tRNA(Gln) am 24.8 1.1E+02 0.0024 29.9 4.5 49 22-76 305-354 (419)
498 PRK08385 nicotinate-nucleotide 24.8 1.7E+02 0.0036 27.1 5.4 55 29-105 154-210 (278)
499 cd01539 PBP1_GGBP Periplasmic 24.8 1.6E+02 0.0034 26.3 5.3 42 19-70 47-89 (303)
500 PF01959 DHQS: 3-dehydroquinat 24.7 2.2E+02 0.0047 27.3 6.3 177 4-205 72-275 (354)
No 1
>PLN02762 pyruvate kinase complex alpha subunit
Probab=100.00 E-value=8.5e-85 Score=630.58 Aligned_cols=259 Identities=79% Similarity=1.155 Sum_probs=237.6
Q ss_pred cceEEEeccCHHHHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChH
Q 024709 6 NIAVIAKIESIDSLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRA 85 (264)
Q Consensus 6 ~~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptra 85 (264)
++.||||||+++|++|||||++++|||||||||||+|+|+++||.+||+||++||++|||||+||||||||++||+||||
T Consensus 246 ~~~IiAKIE~~~av~nl~eIi~~sDgiMVARGDLGvEip~e~vp~~QK~II~~c~~~gKPVIvATQmLeSMi~np~PTRA 325 (509)
T PLN02762 246 DIGVIAKIESLDSLKNLEEIIRASDGAMVARGDLGAQIPLEQVPSVQEKIVRLCRQLNKPVIVASQLLESMIEYPTPTRA 325 (509)
T ss_pred CceEEEEeCCHHHHHHHHHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCEEEECchHHhhhhCCCCCch
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCCCCCCCchHHHHHHHHHHH
Q 024709 86 EVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCREGKQHATFEPPPISSSVSAGIPGEICNGAAKIA 165 (264)
Q Consensus 86 e~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA 165 (264)
|++||+|||+||+||+|||+|||.|+||+|||++|++||+++|++..+...|..+..++.....+.+..+++|.+|+++|
T Consensus 326 EvsDVaNAVlDGtDavMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~~~aia~sa~~~A 405 (509)
T PLN02762 326 EVADVSEAVRQRADALMLSGESAMGLYPEKALSVLRSVSLRMELWSREEKRHEALELPQLSSSLSDRISEEICNSAAKMA 405 (509)
T ss_pred hHHHHHHHHHhCCCEEEEcchhcCCCCHHHHHHHHHHHHHHHHhhhhhcchhhhhhhhccccccccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998643221121111111111112356799999999999
Q ss_pred HhcCCcEEEEEcCCchHHHHHhhcCCCCcEEEEcCChhhhhhcccccccEEEEecCCCCHHHHHHHHHHHHHHcCCCCCC
Q 024709 166 NKLKASALFVYTKTGQMASLLSRSRPDCPIFAFAPMSSVRRRLNLQWGLVPFCLNFSDDMESNLNQTFSLLKARGLIKSG 245 (264)
Q Consensus 166 ~~l~A~aIVv~T~sG~tA~~iSr~RP~~PIiAvT~~~~~aR~L~L~~GV~P~~~~~~~~~e~~i~~al~~~~~~g~~~~G 245 (264)
++++|++||+||+||+||+++|||||.+||||+|++++++|+|+|+|||+|++.++..+.+++++.++++++++|++++|
T Consensus 406 ~~l~a~aIv~~T~sG~tA~~iSk~RP~~pIia~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~G 485 (509)
T PLN02762 406 NNLGVDAIFVYTKHGHMASLLSRNRPDCPIFAFTDTTSVRRRLNLQWGLIPFRLDFSDDMESNLNKTFSLLKARGMIKSG 485 (509)
T ss_pred hhcCCCEEEEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred CEEEEEec-----CCceEEEEECC
Q 024709 246 DLIIVVSD-----MLQCIQVINVP 264 (264)
Q Consensus 246 D~VVvvsG-----~~~~i~v~~v~ 264 (264)
|.||+++| .||+|+|++||
T Consensus 486 D~VVv~~g~~~~g~tn~i~v~~v~ 509 (509)
T PLN02762 486 DLVIAVSDLTPSSMLQSIQVRNVP 509 (509)
T ss_pred CEEEEEeCCCCCCCceEEEEEEcC
Confidence 99999988 58999999998
No 2
>PTZ00066 pyruvate kinase; Provisional
Probab=100.00 E-value=2.5e-83 Score=620.25 Aligned_cols=258 Identities=34% Similarity=0.560 Sum_probs=236.7
Q ss_pred CCcceEEEeccCHHHHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCC
Q 024709 4 LVNIAVIAKIESIDSLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPT 83 (264)
Q Consensus 4 ~~~~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~pt 83 (264)
..++.|||||||++|++|||||++++|||||||||||+|+|+++||.+||+||++|+++|||||+||||||||++||+||
T Consensus 249 g~~~~IiAKIE~~~av~NldeIl~~sDGIMVARGDLGvEip~e~vp~~QK~II~~c~~~gkPVIvATQmLeSMi~np~PT 328 (513)
T PTZ00066 249 GRHIKIIPKIENIEGLINFDEILAESDGIMVARGDLGMEIPPEKVFLAQKMMISKCNVAGKPVITATQMLESMIKNPRPT 328 (513)
T ss_pred CCCceEEEEECCHHHHHHHHHHHHhcCEEEEEccccccccChHHcchHHHHHHHHHHHhCCCEEEechhHHHHhhCCCCc
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCCCCCCCchHHHHHHHHH
Q 024709 84 RAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCREGKQHATFEPPPISSSVSAGIPGEICNGAAK 163 (264)
Q Consensus 84 rae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~ 163 (264)
|||++||+|||+||+||+|||+|||.|+||+|||++|++||.++|+++.+...|. ........+.+..+++|.+|++
T Consensus 329 RAEvsDVaNAV~DG~DavMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~---~~~~~~~~~~~~~~~ia~aa~~ 405 (513)
T PTZ00066 329 RAESTDVANAVLDGTDCVMLSGETANGKFPVEAVNIMAKICFEAETCIDYRVLYH---AIHLAVPTPVSVQEAVARSAVE 405 (513)
T ss_pred hHHHHHHHHHHHhCCcEEEecchhcCCcCHHHHHHHHHHHHHHHhhccchHHhhh---hhhccccCCCchhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998643221111 0110011122346899999999
Q ss_pred HHHhcCCcEEEEEcCCchHHHHHhhcCCCCcEEEEcCChhhhhhcccccccEEEEecCCCCHHHHHHHHHHHHHHcCCCC
Q 024709 164 IANKLKASALFVYTKTGQMASLLSRSRPDCPIFAFAPMSSVRRRLNLQWGLVPFCLNFSDDMESNLNQTFSLLKARGLIK 243 (264)
Q Consensus 164 lA~~l~A~aIVv~T~sG~tA~~iSr~RP~~PIiAvT~~~~~aR~L~L~~GV~P~~~~~~~~~e~~i~~al~~~~~~g~~~ 243 (264)
+|+++++++||+||+||+||+++|||||.+||||+|++++++|+|+|+|||+|++.+...+.+++++.+++++++.|+++
T Consensus 406 ~A~~l~a~aIv~~T~SG~TAr~iSk~RP~~pIia~t~~~~~~R~L~L~wGV~p~~~~~~~~~~~~i~~a~~~~~~~g~~~ 485 (513)
T PTZ00066 406 TAEDINAKLIIALTETGNTARLISKYRPSCTILALSASPSVVKSLSVARGVTTYVVNSFQGTDVVIRNAIALAKERGLVE 485 (513)
T ss_pred HHHhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEEEecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999888889999999999999999999
Q ss_pred CCCEEEEEec-------CCceEEEEECC
Q 024709 244 SGDLIIVVSD-------MLQCIQVINVP 264 (264)
Q Consensus 244 ~GD~VVvvsG-------~~~~i~v~~v~ 264 (264)
+||.||+++| .||+++|++||
T Consensus 486 ~GD~vVv~~g~~~~~~g~tn~irv~~v~ 513 (513)
T PTZ00066 486 SGDSAIAVHGVKEEVAGSSNLMKVVKIP 513 (513)
T ss_pred CCCEEEEEeCCCCCCCCCCeEEEEEEcC
Confidence 9999999988 49999999998
No 3
>PTZ00300 pyruvate kinase; Provisional
Probab=100.00 E-value=1.2e-80 Score=596.37 Aligned_cols=258 Identities=34% Similarity=0.543 Sum_probs=233.9
Q ss_pred CCCcceEEEeccCHHHHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCC
Q 024709 3 SLVNIAVIAKIESIDSLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIP 82 (264)
Q Consensus 3 ~~~~~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~p 82 (264)
.+.++.|||||||++|++|||||++.+|||||||||||+|+|.++||.+||+|+++|+++|||||+||||||||++||+|
T Consensus 185 ~~~~~~IiaKIEt~eav~nldeI~~~~DgImVaRGDLgvei~~e~vp~~Qk~Ii~~~~~~gkpvI~ATQmLeSM~~~p~P 264 (454)
T PTZ00300 185 KGGDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKILISKCNVAGKPVICATQMLESMTYNPRP 264 (454)
T ss_pred cCCCceEEEEECCHHHHHhHHHHHHhCCEEEEecchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEECchHHHHhhCCCC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCCCCCCCchHHHHHHHH
Q 024709 83 TRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCREGKQHATFEPPPISSSVSAGIPGEICNGAA 162 (264)
Q Consensus 83 trae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv 162 (264)
||||++||+|||+||+||+|||+|||.|+||+|||++|++||.++|+..++...|... .. ....+.+..+++|.+|+
T Consensus 265 TRAEvsDVanAv~dG~DavMLS~ETA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~--~~-~~~~~~~~~~~ia~sa~ 341 (454)
T PTZ00300 265 TRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARICLEAQSAVNEYVFFNSI--KK-LQPIPMSAEEAVCSSAV 341 (454)
T ss_pred CchhHHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhhhchhhhhhhh--hc-cccCCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999854321111110 00 01112234689999999
Q ss_pred HHHHhcCCcEEEEEcCCchHHHHHhhcCCCCcEEEEcCChhhhhhcccccccEEEEecC-----CCCHHHHHHHHHHHHH
Q 024709 163 KIANKLKASALFVYTKTGQMASLLSRSRPDCPIFAFAPMSSVRRRLNLQWGLVPFCLNF-----SDDMESNLNQTFSLLK 237 (264)
Q Consensus 163 ~lA~~l~A~aIVv~T~sG~tA~~iSr~RP~~PIiAvT~~~~~aR~L~L~~GV~P~~~~~-----~~~~e~~i~~al~~~~ 237 (264)
++|.++++++||+||+||+||+++|||||.+||||+|++++++|+|+|+|||+|++++. ..+.++++..++++++
T Consensus 342 ~~a~~l~a~aIiv~T~sG~tA~~vs~~RP~~pIia~t~~~~~ar~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~a~~~~~ 421 (454)
T PTZ00300 342 NSVYETKAKALVVLSNTGRSARLVAKYRPNCPIVCVTTRLQTCRQLNITQGVESVFFDAERLGHDEGKEQRVAMGVGFAK 421 (454)
T ss_pred HHHHhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEEEeccccccccCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998864 4567889999999999
Q ss_pred HcCCCCCCCEEEEEec------CCceEEEEEC
Q 024709 238 ARGLIKSGDLIIVVSD------MLQCIQVINV 263 (264)
Q Consensus 238 ~~g~~~~GD~VVvvsG------~~~~i~v~~v 263 (264)
++|++++||.||+++| +||++||+.|
T Consensus 422 ~~g~~~~gd~vvi~~g~~~~~g~tn~i~v~~~ 453 (454)
T PTZ00300 422 SKGYVQSGDLMVVVHADHKVKGYANQTRIILV 453 (454)
T ss_pred HcCCCCCCCEEEEEeCCCCCCCCCCEEEEEEe
Confidence 9999999999999887 4999999987
No 4
>PLN02461 Probable pyruvate kinase
Probab=100.00 E-value=1.4e-80 Score=601.53 Aligned_cols=256 Identities=33% Similarity=0.506 Sum_probs=232.5
Q ss_pred CcceEEEeccCHHHHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCCh
Q 024709 5 VNIAVIAKIESIDSLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTR 84 (264)
Q Consensus 5 ~~~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptr 84 (264)
.++.|||||||++|++|||||++++|||||||||||+|+|+++||.+||+||++|+++|||||+||||||||++||+|||
T Consensus 234 ~~~~IiAKIE~~~av~nl~eIi~~sDgIMVARGDLGvEip~e~vp~~Qk~II~~c~~~gkPVIvATQmLeSMi~np~PTR 313 (511)
T PLN02461 234 KSILLISKVENQEGLDNFDDILAESDAFMVARGDLGMEIPIEKIFLAQKMMIYKCNLAGKPVVTATQMLESMIKSPRPTR 313 (511)
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhcCEEEEeccccccccCHHHhHHHHHHHHHHHHHcCCCeEEeehhHHHHhhCCCCch
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCCCCCCCchHHHHHHHHHH
Q 024709 85 AEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCREGKQHATFEPPPISSSVSAGIPGEICNGAAKI 164 (264)
Q Consensus 85 ae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~l 164 (264)
||++||+|||+||+||+|||+|||.|+||+|||++|++||.++|+++.+...|.. .......+.+..+++|.+|+++
T Consensus 314 AEvsDVanAV~dG~D~vMLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~---~~~~~~~~~~~~~~ia~sav~~ 390 (511)
T PLN02461 314 AEATDVANAVLDGTDCVMLSGETAAGAYPELAVKTMARICREAEASLDYGALFKE---IMRSAPLPMSPLESLASSAVRT 390 (511)
T ss_pred HHHHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhccchhhhhhh---hcccccccCChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986432211111 1000111224579999999999
Q ss_pred HHhcCCcEEEEEcCCchHHHHHhhcCCCCcEEEEcCC-------------hhhhhhcccccccEEEEecC------CCCH
Q 024709 165 ANKLKASALFVYTKTGQMASLLSRSRPDCPIFAFAPM-------------SSVRRRLNLQWGLVPFCLNF------SDDM 225 (264)
Q Consensus 165 A~~l~A~aIVv~T~sG~tA~~iSr~RP~~PIiAvT~~-------------~~~aR~L~L~~GV~P~~~~~------~~~~ 225 (264)
|.++++++||+||+||+||+++|||||.+||||+|++ ++++|||+|+|||+|++.+. ..+.
T Consensus 391 A~~l~a~aIiv~T~sG~tA~~iSk~RP~~pIia~t~~~~~~~~~~w~~~~~~~ar~l~L~~GV~P~~~~~~~~~~~~~~~ 470 (511)
T PLN02461 391 ANKVKASLIVVLTRGGTTARLVAKYRPAVPILSVVVPEITTDSFDWSCSDEAPARHSLIYRGLIPVLAEGSAKATDSEST 470 (511)
T ss_pred HHhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEEecCcccccccccccCCHHHhhhhheecceEEEEecccccccccCCH
Confidence 9999999999999999999999999999999999966 89999999999999998764 4678
Q ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEEec--CCceEEEEEC
Q 024709 226 ESNLNQTFSLLKARGLIKSGDLIIVVSD--MLQCIQVINV 263 (264)
Q Consensus 226 e~~i~~al~~~~~~g~~~~GD~VVvvsG--~~~~i~v~~v 263 (264)
+++++.+++++++.|++++||.||+++| .+|+++|..|
T Consensus 471 ~~~i~~a~~~~~~~g~~~~Gd~vvvv~~~g~tn~i~v~~v 510 (511)
T PLN02461 471 EEILEAAIEHAKKKGLCKPGDSVVALHRIGGASVIKILTV 510 (511)
T ss_pred HHHHHHHHHHHHHcCCCCCcCEEEEEecCCCCcEEEEEEe
Confidence 8999999999999999999999999988 5999999876
No 5
>PRK09206 pyruvate kinase; Provisional
Probab=100.00 E-value=5.1e-80 Score=594.11 Aligned_cols=252 Identities=35% Similarity=0.526 Sum_probs=234.0
Q ss_pred CcceEEEeccCHHHHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCCh
Q 024709 5 VNIAVIAKIESIDSLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTR 84 (264)
Q Consensus 5 ~~~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptr 84 (264)
+++.||+||||++|++|+|||++++|||||||||||+|+|.++||.+||+|+++|+++|||||+||||||||++||+|||
T Consensus 213 ~~~~iiaKIEt~eav~nldeIl~~~DgImVaRGDLgvelg~e~vp~~qk~ii~~~~~~gkpvI~ATqmLeSM~~np~PTR 292 (470)
T PRK09206 213 ENIQIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCNRARKVVITATQMLDSMIKNPRPTR 292 (470)
T ss_pred CCceEEEEECCHHHHHhHHHHHHhCCEEEECcchhhhhcCHHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCCCc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCCCCCCCchHHHHHHHHHH
Q 024709 85 AEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCREGKQHATFEPPPISSSVSAGIPGEICNGAAKI 164 (264)
Q Consensus 85 ae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~l 164 (264)
||++||+|||+||+||+|||+|||.|+||+|||++|++||+++|+++.+. + ..... ....+..+++|.+|+++
T Consensus 293 AEvsDVanav~dG~DavMLS~ETA~G~yPveaV~~m~~I~~~~E~~~~~~--~---~~~~~--~~~~~~~~~ia~sa~~~ 365 (470)
T PRK09206 293 AEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSR--L---ESNND--NRKLRITEAVCRGAVET 365 (470)
T ss_pred hhhHHHHHHhhhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhhcchh--h---hhhcc--ccCCChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999854321 1 10110 01135679999999999
Q ss_pred HHhcCCcEEEEEcCCchHHHHHhhcCCCCcEEEEcCChhhhhhcccccccEEEEecCCCCHHHHHHHHHHHHHHcCCCCC
Q 024709 165 ANKLKASALFVYTKTGQMASLLSRSRPDCPIFAFAPMSSVRRRLNLQWGLVPFCLNFSDDMESNLNQTFSLLKARGLIKS 244 (264)
Q Consensus 165 A~~l~A~aIVv~T~sG~tA~~iSr~RP~~PIiAvT~~~~~aR~L~L~~GV~P~~~~~~~~~e~~i~~al~~~~~~g~~~~ 244 (264)
|.++++++||+||+||+||+++|||||.+||||+|++++++|+|+|+|||+|++++...+.++++..++++++++|++++
T Consensus 366 A~~l~a~aIv~~T~sG~tA~~is~~RP~~pIia~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~a~~~~~~~g~~~~ 445 (470)
T PRK09206 366 AEKLDAPLIVVATQGGKSARSVRKYFPDATILALTTNEKTARQLVLSKGVVPQLVKEIASTDDFYRLGKELALQSGLAQK 445 (470)
T ss_pred HhcCCCCEEEEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999998878899999999999999999999
Q ss_pred CCEEEEEec------CCceEEEEEC
Q 024709 245 GDLIIVVSD------MLQCIQVINV 263 (264)
Q Consensus 245 GD~VVvvsG------~~~~i~v~~v 263 (264)
||.||+++| +||+++|+.+
T Consensus 446 Gd~vvv~~g~~~~~g~tn~i~v~~~ 470 (470)
T PRK09206 446 GDVVVMVSGALVPSGTTNTASVHVL 470 (470)
T ss_pred CCEEEEEeCCCCCCCCCeEEEEEEC
Confidence 999999987 5999999864
No 6
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.8e-80 Score=590.37 Aligned_cols=256 Identities=41% Similarity=0.660 Sum_probs=236.9
Q ss_pred CCCcceEEEeccCHHHHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCC
Q 024709 3 SLVNIAVIAKIESIDSLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIP 82 (264)
Q Consensus 3 ~~~~~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~p 82 (264)
...++.||||||+++|++|||||+++||||||||||||+|+|.++||.+||+||++||++|||||+||||||||+.||+|
T Consensus 214 ~~~~~~iiaKIE~~eav~NldeIi~~SDGIMVARGDLGVEip~e~Vp~~QK~iI~~~~~~gkpVItATQMLeSMi~np~P 293 (477)
T COG0469 214 GGRDVKIIAKIENQEAVDNLDEIIEASDGIMVARGDLGVEIPLEEVPIIQKRIIRKARRAGKPVITATQMLESMIENPRP 293 (477)
T ss_pred CCCCceEEEeecCHHHHhHHHHHHHhcCceEEEecccccccCHHHhhHHHHHHHHHHHHcCCceEEeeccHHHHhhCCCC
Confidence 34558999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCCCCCCCchHHHHHHHH
Q 024709 83 TRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCREGKQHATFEPPPISSSVSAGIPGEICNGAA 162 (264)
Q Consensus 83 trae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv 162 (264)
||||++|||||++||+||+|||+|||.|+||+|||++|++||.++|+....... +. .. ..+...+..++++.+++
T Consensus 294 TRAEvsDVanAvlDGtDAvMLS~ETA~G~yPveaV~~M~~I~~~aE~~~~~~~~---~~-~~-~~~~~~~~~e~ia~aa~ 368 (477)
T COG0469 294 TRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVATMARIAKEAEKELPDNQL---LR-FR-VDPPDSSITEAIALAAV 368 (477)
T ss_pred CchhhhHHHHHHHhCCceeeechhhhcCCCHHHHHHHHHHHHHHHhcccchhhh---hh-hc-cccccccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999996541111 11 11 11224467899999999
Q ss_pred HHHHhcCCcEEEEEcCCchHHHHHhhcCCCCcEEEEcCChhhhhhcccccccEEEEec-CCCCHHHHHHHHHHHHHHcCC
Q 024709 163 KIANKLKASALFVYTKTGQMASLLSRSRPDCPIFAFAPMSSVRRRLNLQWGLVPFCLN-FSDDMESNLNQTFSLLKARGL 241 (264)
Q Consensus 163 ~lA~~l~A~aIVv~T~sG~tA~~iSr~RP~~PIiAvT~~~~~aR~L~L~~GV~P~~~~-~~~~~e~~i~~al~~~~~~g~ 241 (264)
++|.++++++|+++|.||+||+++|||||.+||||+|++++++|+|+++|||+|++++ +..+.++++..+++.+++.|+
T Consensus 369 ~~a~~l~~k~iv~~T~sG~ta~~isk~Rp~~pIia~t~~~~v~r~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~~~~~g~ 448 (477)
T COG0469 369 DIAEKLDAKAIVTLTESGRTARLLSKYRPEAPIIALTPNERVARRLALVWGVYPLLVEEKPTSTDEMVEEAVEKLLESGL 448 (477)
T ss_pred HHHHhcCCcEEEEEcCCCHHHHHHhcCCCCCcEEEECCCHHHHhhhceeecceeEEecCCCCcHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999999999999998 588999999999999999999
Q ss_pred CCCCCEEEEEec-------CCceEEEEEC
Q 024709 242 IKSGDLIIVVSD-------MLQCIQVINV 263 (264)
Q Consensus 242 ~~~GD~VVvvsG-------~~~~i~v~~v 263 (264)
+++||.||+++| +||+++|+.|
T Consensus 449 ~~~gD~vvit~G~~~~~~G~tn~ikv~~v 477 (477)
T COG0469 449 VKKGDLVVITAGVPMGTVGTTNTIKVLTV 477 (477)
T ss_pred ccCCCEEEEecCcccccCCCceeEEEEeC
Confidence 999999999999 3999999875
No 7
>PRK06247 pyruvate kinase; Provisional
Probab=100.00 E-value=1.1e-79 Score=591.44 Aligned_cols=255 Identities=37% Similarity=0.566 Sum_probs=235.0
Q ss_pred CcceEEEeccCHHHHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCCh
Q 024709 5 VNIAVIAKIESIDSLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTR 84 (264)
Q Consensus 5 ~~~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptr 84 (264)
.++.|||||||++|++|+|||++++|||||||||||+|+|.++|+.+||+|+++|+++|||+|+||||||||++||+|||
T Consensus 210 ~~~~iiaKIEt~eav~nldeI~~~~DgImVaRGDLgve~g~~~v~~~qk~ii~~~~~~gkpvI~ATQmLeSM~~np~PTR 289 (476)
T PRK06247 210 GRVPVMAKIEKPQAIDRLEAIVEASDAIMVARGDLGVEVPLEQVPLIQKRIIRAARRAGKPVVVATQMLESMIENPVPTR 289 (476)
T ss_pred hcCeEEEEECCHHHHHhHHHHHHHcCEEEEccchhccccCHHHHHHHHHHHHHHHHHhCCCEEEECchHHHhhcCCCCCc
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCCCCCCCchHHHHHHHHHH
Q 024709 85 AEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCREGKQHATFEPPPISSSVSAGIPGEICNGAAKI 164 (264)
Q Consensus 85 ae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~l 164 (264)
||++||+|||+||+||+|||+|||.|+||+|||++|++||.++|++..+...|. ... .....+..+++|.+|+++
T Consensus 290 AEvtDVaNAV~dG~DavMLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~---~~~--~~~~~~~~~~ia~sa~~~ 364 (476)
T PRK06247 290 AEVSDVATAVLDGADAVMLSAETASGKYPVEAVRTMARIIRQVERDPTYPPLIH---AQR--PQPEATKRDAISYAARDI 364 (476)
T ss_pred chhHHHHHHHHhCCcEEEEcchhcCCCCHHHHHHHHHHHHHHHhhccchhhhhh---hcc--cccCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998543221111 011 011234578999999999
Q ss_pred HHhcCCcEEEEEcCCchHHHHHhhcCCCCcEEEEcCChhhhhhcccccccEEEEecCCCCHHHHHHHHHHHHHHcCCCCC
Q 024709 165 ANKLKASALFVYTKTGQMASLLSRSRPDCPIFAFAPMSSVRRRLNLQWGLVPFCLNFSDDMESNLNQTFSLLKARGLIKS 244 (264)
Q Consensus 165 A~~l~A~aIVv~T~sG~tA~~iSr~RP~~PIiAvT~~~~~aR~L~L~~GV~P~~~~~~~~~e~~i~~al~~~~~~g~~~~ 244 (264)
|+++++++||+||+||+||+++|||||.+||+|+|++++++|+|+|+|||+|++++...+.++++..++++++++|++++
T Consensus 365 A~~l~a~~Iv~~T~sG~ta~~isk~RP~~pI~a~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~a~~~~~~~g~~~~ 444 (476)
T PRK06247 365 AERLDLAALVAYTSSGDTALRAARERPPLPILALTPNPETARRLALTWGVHCVVVDDARDTDDMVRRADRIALAEGFYKR 444 (476)
T ss_pred HHhCCCCEEEEEcCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccCCeeEecCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999998888899999999999999999999
Q ss_pred CCEEEEEec-------CCceEEEEECC
Q 024709 245 GDLIIVVSD-------MLQCIQVINVP 264 (264)
Q Consensus 245 GD~VVvvsG-------~~~~i~v~~v~ 264 (264)
||.||+++| .||+++|++|+
T Consensus 445 Gd~vvv~~g~~~~~~g~tn~i~v~~v~ 471 (476)
T PRK06247 445 GDRVVIVAGVPPGTPGSTNMLRIAYIG 471 (476)
T ss_pred CCEEEEEeCCCCCCCCCCeEEEEEEeC
Confidence 999999987 49999999874
No 8
>PLN02765 pyruvate kinase
Probab=100.00 E-value=3.2e-79 Score=592.48 Aligned_cols=255 Identities=28% Similarity=0.463 Sum_probs=230.0
Q ss_pred CcceEEEeccCHHHHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCCh
Q 024709 5 VNIAVIAKIESIDSLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTR 84 (264)
Q Consensus 5 ~~~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptr 84 (264)
.++.||||||+++|++|||||++++|||||||||||+|+|.++||.+||+||++|+++|||||+ |||||||++||+|||
T Consensus 248 ~~~~IiaKIE~~~av~nl~eIi~~sDgIMVARGDLGvEip~e~vp~~QK~iI~~c~~~gKPVI~-TQmLeSMi~np~PTR 326 (526)
T PLN02765 248 SQTQIFAKIENVEGLTHFDEILQEADGIILSRGNLGIDLPPEKVFLFQKAALYKCNMAGKPAVV-TRVVDSMTDNLRPTR 326 (526)
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCEEEEecCccccccCHHHhHHHHHHHHHHHHHhCCCeEE-ehhhhHHhhCCCCCh
Confidence 3789999999999999999999999999999999999999999999999999999999999996 999999999999999
Q ss_pred HHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhhcccccccCCCCCCC-CCCCCCchHHHHHHHHH
Q 024709 85 AEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCREGKQHATFEPPPIS-SSVSAGIPGEICNGAAK 163 (264)
Q Consensus 85 ae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~~~~~~~~~~~~~~~-~~~~~~~~~aIA~aAv~ 163 (264)
||++||+|||+||+||+|||+|||.|+||+|||++|++||.++|+++.+...+. .... ...+.+..+++|.+|++
T Consensus 327 AEvsDVaNAV~DGaDavMLSgETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~----~~~~~~~~~~~~~~aia~sav~ 402 (526)
T PLN02765 327 AEATDVANAVLDGADAILLGAETLRGLYPVETISTVGRICAEAEKVFNQDLYFK----KTVKYVGEPMSHLESIASSAVR 402 (526)
T ss_pred hhHHHHHHHHHhCCCEEEecchhcCCCCHHHHHHHHHHHHHHHHhhcchhhhhh----hhhcccccCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998643221111 1000 01122346899999999
Q ss_pred HHHhcCCcEEEEEcCCchHHHHHhhcCCCCcEEEEc-CC------------hhhhhhcccccccEEEEecCCCC------
Q 024709 164 IANKLKASALFVYTKTGQMASLLSRSRPDCPIFAFA-PM------------SSVRRRLNLQWGLVPFCLNFSDD------ 224 (264)
Q Consensus 164 lA~~l~A~aIVv~T~sG~tA~~iSr~RP~~PIiAvT-~~------------~~~aR~L~L~~GV~P~~~~~~~~------ 224 (264)
+|.+++|++||+||+||+||+++|||||.+||+|+| ++ ++++|||+|+|||+|++.+...+
T Consensus 403 ~A~~l~a~aIvv~T~sG~tAr~isk~RP~~pIla~t~~~~~~~~~~~~~~~~~~aR~L~L~~GV~P~~~~~~~~~e~~~~ 482 (526)
T PLN02765 403 AAIKVKASVIIVFTSSGRAARLIAKYRPTMPVLSVVIPRLKTNQLKWSFTGAFQARQCLIVRGLFPMLADPRHSAESTSA 482 (526)
T ss_pred HHhhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEEecCcccccccccccCcHHHHHHhhcccCCEEEEeccccccccccc
Confidence 999999999999999999999999999999999999 77 89999999999999998875444
Q ss_pred -HHHHHHHHHHHHHHcCCCCCCCEEEEEec--CCceEEEEECC
Q 024709 225 -MESNLNQTFSLLKARGLIKSGDLIIVVSD--MLQCIQVINVP 264 (264)
Q Consensus 225 -~e~~i~~al~~~~~~g~~~~GD~VVvvsG--~~~~i~v~~v~ 264 (264)
.+..+..++++++++|++++||.||++++ +||+++|++||
T Consensus 483 ~~~~~~~~a~~~~~~~g~~~~GD~vvv~~~~g~tn~i~v~~v~ 525 (526)
T PLN02765 483 TNESVLKVALDHGKAAGVIKSHDRVVVCQKVGDSSVVKIIELD 525 (526)
T ss_pred cHHHHHHHHHHHHHHcCCCCCCCEEEEEecCCCCceEEEEEcC
Confidence 57789999999999999999999999865 79999999986
No 9
>PRK06354 pyruvate kinase; Provisional
Probab=100.00 E-value=1.3e-78 Score=598.68 Aligned_cols=255 Identities=35% Similarity=0.587 Sum_probs=236.3
Q ss_pred CCCcceEEEeccCHHHHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCC
Q 024709 3 SLVNIAVIAKIESIDSLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIP 82 (264)
Q Consensus 3 ~~~~~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~p 82 (264)
.+.++.||+||||++|++|+|||++++|||||||||||+|+|.++||.+||+|+++|+++|||||+||||||||++||+|
T Consensus 217 ~~~~~~iiaKIEt~eav~nldeI~~~~DgImVaRGDLgve~g~e~v~~~qk~ii~~~~~~gkpvI~ATqmLeSM~~~p~P 296 (590)
T PRK06354 217 NGKHIPIIAKIEKQEAIDNIDAILELCDGLMVARGDLGVEIPAEEVPLLQKRLIKKANRLGKPVITATQMLDSMQRNPRP 296 (590)
T ss_pred cCCCceEEEEECCHHHHHhHHHHHHhcCEEEEccchhhcccCcHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCC
Confidence 47789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCCCCCCCchHHHHHHHH
Q 024709 83 TRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCREGKQHATFEPPPISSSVSAGIPGEICNGAA 162 (264)
Q Consensus 83 trae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv 162 (264)
||||++||+|||+||+||+|||+|||.|+||+|||++|++||+++|+++++...+ .+.... ..+..+++|.+++
T Consensus 297 TRAEvsDVaNav~DG~DavMLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~-----~~~~~~-~~~~~~~ia~aa~ 370 (590)
T PRK06354 297 TRAEASDVANAILDGTDAVMLSNETAAGDYPVEAVQTMATIAVRIEKDLPYRDIL-----SKRPEF-TTTITNAISQAVS 370 (590)
T ss_pred CchhhHHHHHHhhhCCcEEEecccccCCCCHHHHHHHHHHHHHHHHhccchhhhh-----hhcccc-CCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999864322111 111111 2345789999999
Q ss_pred HHHHhcCCcEEEEEcCCchHHHHHhhcCCCCcEEEEcCChhhhhhcccccccEEEEecCCCCHHHHHHHHHHHHHHcCCC
Q 024709 163 KIANKLKASALFVYTKTGQMASLLSRSRPDCPIFAFAPMSSVRRRLNLQWGLVPFCLNFSDDMESNLNQTFSLLKARGLI 242 (264)
Q Consensus 163 ~lA~~l~A~aIVv~T~sG~tA~~iSr~RP~~PIiAvT~~~~~aR~L~L~~GV~P~~~~~~~~~e~~i~~al~~~~~~g~~ 242 (264)
++|.++++++|++||+||+||+++|||||.+||||+|++++++|||+|+|||+|++++...+.+++++.+++++++.|++
T Consensus 371 ~~a~~~~a~~Iv~~T~sG~ta~~vsk~Rp~~pI~a~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~~~~g~~ 450 (590)
T PRK06354 371 HIALQLDAAAIVTLTKSGATARNVSKYRPKTPILAVTPNESVARRLQLVWGVTPLLVLDAPSTDETFDAAINVAQESGLL 450 (590)
T ss_pred HHHhhcCCCEEEEECCChHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccCcEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred CCCCEEEEEec-------CCceEEEEEC
Q 024709 243 KSGDLIIVVSD-------MLQCIQVINV 263 (264)
Q Consensus 243 ~~GD~VVvvsG-------~~~~i~v~~v 263 (264)
++||.||+++| .||+++|++|
T Consensus 451 ~~gd~vv~~~g~~~~~~g~tn~~~v~~v 478 (590)
T PRK06354 451 KQGDLVVITAGTLVGESGSTDLMKVHVV 478 (590)
T ss_pred CCCCEEEEEeCCCCCcCCCceeEEEEEe
Confidence 99999999977 4999999987
No 10
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=100.00 E-value=3.4e-77 Score=577.05 Aligned_cols=258 Identities=36% Similarity=0.557 Sum_probs=235.3
Q ss_pred CCCcceEEEeccCHHHHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCC
Q 024709 3 SLVNIAVIAKIESIDSLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIP 82 (264)
Q Consensus 3 ~~~~~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~p 82 (264)
.|.++.+|+||||++|++|+|||++++|||||||||||+++|.++|+.+||+|+++|+++|||+|+||||||||++||+|
T Consensus 212 ~~~~~~iiakIEt~~av~nldeI~~~~DgImIargDLg~e~g~~~v~~~qk~ii~~~~~~gkpvi~ATqmLeSM~~~p~P 291 (480)
T cd00288 212 KGKDIKIIAKIENQEGVNNFDEILEASDGIMVARGDLGVEIPAEEVFLAQKMLIAKCNLAGKPVITATQMLESMIYNPRP 291 (480)
T ss_pred cCCCceEEEEECCHHHHHhHHHHHHhcCEEEECcchhhhhcChHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCCCCCCCchHHHHHHHH
Q 024709 83 TRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCREGKQHATFEPPPISSSVSAGIPGEICNGAA 162 (264)
Q Consensus 83 trae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv 162 (264)
||||++||+|||+||+||+|||+|||.|+||+|||++|++||+++|+++.+...|. ..........+..++++.+|+
T Consensus 292 TRAEvtDVanav~dG~D~vmLS~ETa~G~yPveaV~~m~~I~~~aE~~~~~~~~~~---~~~~~~~~~~~~~~aia~sAv 368 (480)
T cd00288 292 TRAEVSDVANAVLDGTDCVMLSGETAKGKYPVEAVKAMARICLEAEKALSHRVLFN---EMRRLTPRPTSTTEAVAMSAV 368 (480)
T ss_pred CchhhHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhccchhhhhh---hhhcccccCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998643221111 011000111235799999999
Q ss_pred HHHHhcCCcEEEEEcCCchHHHHHhhcCCCCcEEEEcCChhhhhhcccccccEEEEecCC-----CCHHHHHHHHHHHHH
Q 024709 163 KIANKLKASALFVYTKTGQMASLLSRSRPDCPIFAFAPMSSVRRRLNLQWGLVPFCLNFS-----DDMESNLNQTFSLLK 237 (264)
Q Consensus 163 ~lA~~l~A~aIVv~T~sG~tA~~iSr~RP~~PIiAvT~~~~~aR~L~L~~GV~P~~~~~~-----~~~e~~i~~al~~~~ 237 (264)
++|+++++++||++|+||+||+++|+|||.+|||++|++++++|+|+|+|||+|++++.. .+.++++..+.++++
T Consensus 369 ~~A~~l~akaIVv~T~SG~TA~~lS~~RP~~pIiavT~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (480)
T cd00288 369 RAAFELGAKAIVVLTTSGRTARLVSKYRPNAPIIAVTRNEQTARQLHLYRGVYPVLFEEPKPGWQEDTDARLKAAVNVAK 448 (480)
T ss_pred HHHHhcCCCEEEEECCCcHHHHHHHhhCCCCCEEEEcCCHHHhhheeeccCcEEEEecccccccCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998765 788999999999999
Q ss_pred HcCCCCCCCEEEEEec------CCceEEEEEC
Q 024709 238 ARGLIKSGDLIIVVSD------MLQCIQVINV 263 (264)
Q Consensus 238 ~~g~~~~GD~VVvvsG------~~~~i~v~~v 263 (264)
++|++++||.||+++| +||+++|++|
T Consensus 449 ~~g~~~~gd~vv~~~g~~~~~~~tn~i~v~~~ 480 (480)
T cd00288 449 EKGLLKKGDLVVVVQGWPVGSGSTNTMRILTV 480 (480)
T ss_pred HcCCCCCCCEEEEEeCCCCCCCCCeEEEEEEC
Confidence 9999999999999988 3999999875
No 11
>PRK05826 pyruvate kinase; Provisional
Probab=100.00 E-value=8e-77 Score=572.57 Aligned_cols=246 Identities=41% Similarity=0.614 Sum_probs=228.0
Q ss_pred CCC-cceEEEeccCHHHHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCC
Q 024709 3 SLV-NIAVIAKIESIDSLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPI 81 (264)
Q Consensus 3 ~~~-~~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ 81 (264)
.|. ++.||+||||++|++|+|||++++|||||||||||+++|.++++.+||+|+++|+++|||+|+||||||||+++|+
T Consensus 211 ~~~~~~~iiakIEt~eav~nldeI~~~~DgImIgrgDLg~elg~~~v~~~qk~Ii~~c~~~gKpvi~ATqmLeSM~~~p~ 290 (465)
T PRK05826 211 AGCPHAKIIAKIERAEAVDNIDEIIEASDGIMVARGDLGVEIPDEEVPGLQKKIIRKAREAGKPVITATQMLESMIENPR 290 (465)
T ss_pred cCCcCceEEEEEcCHHHHHhHHHHHHHcCEEEECcchhhhhcCcHhHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhCCC
Confidence 355 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCCCCCCCchHHHHHHH
Q 024709 82 PTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCREGKQHATFEPPPISSSVSAGIPGEICNGA 161 (264)
Q Consensus 82 ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~aIA~aA 161 (264)
|||||++||+||++||+||+|||+|||.|+||+|||++|++||.++|+++++...+ ...... ..+..+++|.++
T Consensus 291 PTRAEvsDVanav~dG~D~vmLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~-----~~~~~~-~~~~~~~ia~aa 364 (465)
T PRK05826 291 PTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVEAMARICKGAEKEFSINLSK-----HRLDRQ-FDRIDEAIAMSA 364 (465)
T ss_pred CchhhhhhHHHHHHcCCcEEEeccccccCcCHHHHHHHHHHHHHHHHhccchhhhh-----hhcccc-ccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999865431111 111011 135679999999
Q ss_pred HHHHHhcC-CcEEEEEcCCchHHHHHhhcCCCCcEEEEcCChhhhhhcccccccEEEEecCCCCHHHHHHHHHHHHHHcC
Q 024709 162 AKIANKLK-ASALFVYTKTGQMASLLSRSRPDCPIFAFAPMSSVRRRLNLQWGLVPFCLNFSDDMESNLNQTFSLLKARG 240 (264)
Q Consensus 162 v~lA~~l~-A~aIVv~T~sG~tA~~iSr~RP~~PIiAvT~~~~~aR~L~L~~GV~P~~~~~~~~~e~~i~~al~~~~~~g 240 (264)
+++|.+++ |++||+||+||+||+++|||||.+|||++|++++++|+|+|+|||+|++.+...+.++.+..+++++++.|
T Consensus 365 ~~~a~~l~~a~~Ivv~T~sG~ta~~isk~RP~~pI~~~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~a~~~~~~~g 444 (465)
T PRK05826 365 MYAANHLKGVKAIVALTESGRTARLISRFRPGAPIFAVTRDEKTQRRLALYRGVYPVLFDSAADTDDAAEEALRLLLEKG 444 (465)
T ss_pred HHHHHhcCCCCEEEEECCCcHHHHHHHhhCCCCCEEEEcCCHHHHHHhhcccCcEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 99999999 99999999999999999999999999999999999999999999999999877889999999999999999
Q ss_pred CCCCCCEEEEEecC
Q 024709 241 LIKSGDLIIVVSDM 254 (264)
Q Consensus 241 ~~~~GD~VVvvsG~ 254 (264)
++++||.||+++|.
T Consensus 445 ~~~~gd~vvvv~g~ 458 (465)
T PRK05826 445 LVESGDLVVVTSGD 458 (465)
T ss_pred CCCCCCEEEEEeCC
Confidence 99999999999994
No 12
>PLN02623 pyruvate kinase
Probab=100.00 E-value=9.7e-73 Score=551.24 Aligned_cols=256 Identities=47% Similarity=0.713 Sum_probs=235.7
Q ss_pred CCCcceEEEeccCHHHHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCC
Q 024709 3 SLVNIAVIAKIESIDSLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIP 82 (264)
Q Consensus 3 ~~~~~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~p 82 (264)
.|.++.+|+||||++|++|+|||++.+|||||||||||+++|.++|+.+||+|+++|+++|||+|+||||||||+.+|.|
T Consensus 316 ~~~~~~iiakIEt~eaVeNldeIl~g~DgImIgrgDLgvelg~~~v~~~qk~Ii~~~~~~gKpvivaTQMLESMi~~~~P 395 (581)
T PLN02623 316 CNADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELPIEEVPLLQEEIIRRCRSMGKPVIVATNMLESMIVHPTP 395 (581)
T ss_pred cCCcceEEEEECCHHHHHhHHHHHHhCCEEEECcchhhhhcCcHHHHHHHHHHHHHHHHhCCCEEEECchhhhcccCCCC
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCCCCCCCchHHHHHHHH
Q 024709 83 TRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCREGKQHATFEPPPISSSVSAGIPGEICNGAA 162 (264)
Q Consensus 83 trae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv 162 (264)
||||++|++|++.+|+|++|||+||+.|+||+|||++|++||.++|+++.+...+ ..+....+.+..+++|.+|+
T Consensus 396 TRAEv~Dva~av~dG~d~vmLs~Eta~G~yPveaV~~m~~I~~~aE~~~~~~~~~-----~~~~~~~~~~~~~~ia~sA~ 470 (581)
T PLN02623 396 TRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTVALRTEATLPEGTTP-----PNLGQAFKNHMSEMFAFHAT 470 (581)
T ss_pred CchhHHHHHHHHHcCCCEEEecchhhcCcCHHHHHHHHHHHHHHHHhhcccchhh-----hhhccccCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999864322111 00001112345789999999
Q ss_pred HHHHhcCCcEEEEEcCCchHHHHHhhcCCCCcEEEEcCChhhhhhcccccccEEEEecCCCCHHHHHHHHHHHHHHcCCC
Q 024709 163 KIANKLKASALFVYTKTGQMASLLSRSRPDCPIFAFAPMSSVRRRLNLQWGLVPFCLNFSDDMESNLNQTFSLLKARGLI 242 (264)
Q Consensus 163 ~lA~~l~A~aIVv~T~sG~tA~~iSr~RP~~PIiAvT~~~~~aR~L~L~~GV~P~~~~~~~~~e~~i~~al~~~~~~g~~ 242 (264)
++|++++++ ||+||+||+||+++|||||.+||||+|++++++|||+|+|||+|++.++..+.+++++.+++++++.|++
T Consensus 471 ~~A~~l~a~-Ivv~T~sG~tA~~lSr~RP~~pI~avT~~~~~aR~L~L~~GV~P~~~~~~~~~e~~i~~a~~~~~~~g~v 549 (581)
T PLN02623 471 MMANTLGTS-IIVFTRTGFMAILLSHYRPSGTIFAFTNEKRIQQRLALYQGVCPIYMQFSDDAEETFARALSLLLNKGMV 549 (581)
T ss_pred HHHHhcCCc-EEEECCCcHHHHHHHhhCCCCCEEEECCCHHHHHHhhcccccEEEecCCCCCHHHHHHHHHHHHHHcCCC
Confidence 999999999 9999999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred CCCCEEEEEec---------CCceEEEEECC
Q 024709 243 KSGDLIIVVSD---------MLQCIQVINVP 264 (264)
Q Consensus 243 ~~GD~VVvvsG---------~~~~i~v~~v~ 264 (264)
++||.||+++| +||+++|++|+
T Consensus 550 ~~GD~vviv~g~~~p~~~~g~tn~i~V~~v~ 580 (581)
T PLN02623 550 KEGEEVALVQSGRQPIWRSESTHHIQVRKVQ 580 (581)
T ss_pred CCCCEEEEEeccCCCCCCCCCCeEEEEEEee
Confidence 99999999974 48999999874
No 13
>KOG2323 consensus Pyruvate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-71 Score=532.41 Aligned_cols=257 Identities=36% Similarity=0.551 Sum_probs=236.3
Q ss_pred CCcceEEEeccCHHHHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCC
Q 024709 4 LVNIAVIAKIESIDSLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPT 83 (264)
Q Consensus 4 ~~~~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~pt 83 (264)
..+++||+|||+++|+.|+|||+.++||+||+|||||+|+|.|++|.+||.||.+||++|||||+||||||||+.+|+||
T Consensus 233 g~~ikiisKIEn~~g~~nfDeIl~~sDg~MvarGdlGieip~e~vflaQK~~I~kcn~~gKPVI~atqmleSm~~kprPt 312 (501)
T KOG2323|consen 233 GKNIKLISKIENQEGVSNFDEILIESDGIMVARGDLGIEIPAEKVFLAQKMMIYKCNSAGKPVICATQMLESMIVKPRPT 312 (501)
T ss_pred CCcceEEEEechhhhhccHHHHHHhcCceEEEeCCCCcccCHHHHHHHHHHHHHHhcccCCCEEEehhhHHhhccCCCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCCCCCCCchHHHHHHHHH
Q 024709 84 RAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCREGKQHATFEPPPISSSVSAGIPGEICNGAAK 163 (264)
Q Consensus 84 rae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~ 163 (264)
|||.+||+|||+||+||+||||||+.|+||++||++|++||+++|...++...|.... ...+.+.+..++++.+|+.
T Consensus 313 RaE~SDVanAVLdg~D~vmLsgEta~G~yP~~av~~m~~i~~~aE~~~~~~~~~~~l~---~~v~~~~~~ie~~a~~Av~ 389 (501)
T KOG2323|consen 313 RAEASDVANAVLDGADCVMLSGETAKGKYPVEAVKTMARICKEAEAVIYYDSLFSELG---TAVSFPMSTIESLAASAVR 389 (501)
T ss_pred ccchHHHHHHHhccCceEEeccchhcCcCcHHHHHHHHHHHHhHHhhHHHHHHHHHHH---hhcCCCCchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999666544333221 0123455678999999999
Q ss_pred HHHhcCCcEEEEEcCCchHHHHHhhcCCCCcEEEEcCChhhhhhcccccccEEEEe------cCCCCHHHHHHHHHHHHH
Q 024709 164 IANKLKASALFVYTKTGQMASLLSRSRPDCPIFAFAPMSSVRRRLNLQWGLVPFCL------NFSDDMESNLNQTFSLLK 237 (264)
Q Consensus 164 lA~~l~A~aIVv~T~sG~tA~~iSr~RP~~PIiAvT~~~~~aR~L~L~~GV~P~~~------~~~~~~e~~i~~al~~~~ 237 (264)
+|.+..+.+|+++|++|++|+++|+|||.+||+++|...+.+||++|||||+|+++ .|.++.|+.++.++++++
T Consensus 390 ~a~~~~a~aIvv~T~sg~~a~lvskyrP~~PIi~vt~~~~~aR~~~l~Rgv~Pvl~~~~~~~~~~~~~e~~i~~g~~~~k 469 (501)
T KOG2323|consen 390 AATKCLASAIVVLTKSGYTAILVSKYRPSVPIISVTRPVLAARQSHLYRGIIPVLYARSPVEDWSEDVESRIKFGLDFGK 469 (501)
T ss_pred HHHhhcceEEEEEecCcccHHHHhccCCCCCEEEEeccHHHHHHHHhhccceeeeecccchhhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999995 477889999999999999
Q ss_pred HcCCCCCCCEEEEEec------CCceEEEEEC
Q 024709 238 ARGLIKSGDLIIVVSD------MLQCIQVINV 263 (264)
Q Consensus 238 ~~g~~~~GD~VVvvsG------~~~~i~v~~v 263 (264)
+.|+++.||.+|++.+ .+|+++|.++
T Consensus 470 ~~g~~k~gd~~vvv~~~~~~~~~~~~i~v~~~ 501 (501)
T KOG2323|consen 470 KKGILKKGDVVVVVNKGKGGASVTNTIRVEKV 501 (501)
T ss_pred hcchhhcCCEEEEEecccCCccceeeEEEeeC
Confidence 9999999996666665 4999999764
No 14
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=100.00 E-value=1.4e-69 Score=525.04 Aligned_cols=253 Identities=41% Similarity=0.665 Sum_probs=228.9
Q ss_pred CcceEEEeccCHHHHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCCh
Q 024709 5 VNIAVIAKIESIDSLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTR 84 (264)
Q Consensus 5 ~~~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptr 84 (264)
.++.|++||||++|++|++||++++||+|+|||||++++|.++++.+|++++.+|+++|||+|+||||||||+.||+|||
T Consensus 212 ~~~~Iia~IEt~~av~nl~eI~~~~dgi~iG~gDL~~~lg~~~l~~~~~~ii~aaraag~pvi~atqmLeSM~~~p~PTR 291 (473)
T TIGR01064 212 KDVKIIAKIENQEGVDNIDEIAEASDGIMVARGDLGVEIPAEEVPIAQKKMIRKCNRAGKPVITATQMLDSMIKNPRPTR 291 (473)
T ss_pred CCceEEEEECCHHHHHhHHHHHhhCCcEEEchHHHHhhcCcHHHHHHHHHHHHHHHHcCCCEEEEChhhhhhhcCCCCCc
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCCCCCCCchHHHHHHHHHH
Q 024709 85 AEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCREGKQHATFEPPPISSSVSAGIPGEICNGAAKI 164 (264)
Q Consensus 85 ae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~l 164 (264)
||++|++|++.+|+|++|||+||+.|+||+|||++|++|+.++|+...+...|. ..........+..+++|.+++++
T Consensus 292 Ae~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~~~~~~---~~~~~~~~~~~~~~~ia~~a~~~ 368 (473)
T TIGR01064 292 AEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAYLTNFN---DRKNSDPKPSTITEAIALSAVEA 368 (473)
T ss_pred ccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHhccchhhhhh---hhhcccccCCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998543211111 11100111235679999999999
Q ss_pred HHhcCCcEEEEEcCCchHHHHHhhcCCCCcEEEEcCChhhhhhcccccccEEEEecC-CCCHHHHHHHHHHHHHHcCCCC
Q 024709 165 ANKLKASALFVYTKTGQMASLLSRSRPDCPIFAFAPMSSVRRRLNLQWGLVPFCLNF-SDDMESNLNQTFSLLKARGLIK 243 (264)
Q Consensus 165 A~~l~A~aIVv~T~sG~tA~~iSr~RP~~PIiAvT~~~~~aR~L~L~~GV~P~~~~~-~~~~e~~i~~al~~~~~~g~~~ 243 (264)
|.++++++||+||+||+||+++|||||.+||||+|++++++|+|+|+|||+|++++. ..+.++.+..++++++++|+++
T Consensus 369 a~~~~akaIVv~T~SG~TA~~vSr~rp~~PIiAvT~~~~v~R~L~L~wGV~Pil~~~~~~~~~~~i~~a~~~l~~~gl~~ 448 (473)
T TIGR01064 369 AEKLDAKAIVVLTESGRTARLLSKYRPNAPIIAVTPNERVARQLALYWGVFPFLVDEEPSDTEARVNKALELLKEKGILK 448 (473)
T ss_pred HhhcCCCEEEEEcCChHHHHHHHhhCCCCCEEEEcCCHHHHHHhhccCCcEEEEeCCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999999999999999999876 5678899999999999999999
Q ss_pred CCCEEEEEec--------CCceEEE
Q 024709 244 SGDLIIVVSD--------MLQCIQV 260 (264)
Q Consensus 244 ~GD~VVvvsG--------~~~~i~v 260 (264)
+||.||+++| ++|+|+|
T Consensus 449 ~GD~VVvv~g~~~~~~~~~~n~i~v 473 (473)
T TIGR01064 449 KGDLVVVIQGGAPIGGVGGTNTIRV 473 (473)
T ss_pred CCCEEEEEecCCCCCCCCCCeEEeC
Confidence 9999999988 2676664
No 15
>PRK06739 pyruvate kinase; Validated
Probab=100.00 E-value=6.3e-53 Score=393.65 Aligned_cols=128 Identities=41% Similarity=0.643 Sum_probs=125.1
Q ss_pred CcceEEEeccCHHHHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCCh
Q 024709 5 VNIAVIAKIESIDSLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTR 84 (264)
Q Consensus 5 ~~~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptr 84 (264)
.++.|||||||++|++|||||++++|||||||||||+|+|+++||.+||+||++|+++|||||+||||||||+++|+|||
T Consensus 206 ~~~~IiaKIE~~~av~nl~eI~~~sDgimVARGDLgve~~~e~vp~~Qk~Ii~~c~~~gkPvIvATqmLeSM~~~p~PTR 285 (352)
T PRK06739 206 TSPNLIAKIETMEAIENFQDICKEADGIMIARGDLGVELPYQFIPLLQKMMIQECNRTNTYVITATQMLQSMVDHSIPTR 285 (352)
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCEEEEECcccccccCHHHHHHHHHHHHHHHHHhCCCEEEEcchHHhhccCCCCCh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhh
Q 024709 85 AEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCR 132 (264)
Q Consensus 85 ae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~ 132 (264)
||++||+|||+||+||+|||+|||+|+||++||++|++|++++|++..
T Consensus 286 AEvsDVanaV~dG~D~vMLS~ETA~G~yPveaV~~m~~I~~~aE~~~~ 333 (352)
T PRK06739 286 AEVTDVFQAVLDGTNAVMLSAESASGEHPIESVSTLRLVSEFAEHVKK 333 (352)
T ss_pred HHHHHHHHHHHhCCcEEEEcccccCCCCHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999998643
No 16
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=100.00 E-value=3.6e-51 Score=383.41 Aligned_cols=129 Identities=51% Similarity=0.828 Sum_probs=120.8
Q ss_pred CcceEEEeccCHHHHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCCh
Q 024709 5 VNIAVIAKIESIDSLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTR 84 (264)
Q Consensus 5 ~~~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptr 84 (264)
.+++|||||||++|++|||||++++|||||||||||+|+|+++||.+||+|+++|+++|||||+||||||||+++|.|||
T Consensus 216 ~~~~iiaKIE~~~~v~nl~eI~~~sDgimiaRGDLg~e~~~e~v~~~Qk~ii~~~~~~~kpvi~ATq~Lesm~~~~~PTR 295 (348)
T PF00224_consen 216 KDIKIIAKIETKEAVENLDEILEASDGIMIARGDLGVEIPFEKVPIIQKRIIKKCNAAGKPVIVATQMLESMIKNPIPTR 295 (348)
T ss_dssp TTSEEEEEE-SHHHHHTHHHHHHHSSEEEEEHHHHHHHSTGGGHHHHHHHHHHHHHHHT-EEEEESSSSGGGGTSSS--H
T ss_pred cccceeeccccHHHHhhHHHHhhhcCeEEEecCCcceeeeHHHHHHHHHHHHHHHHHhCCCeeehhHhHHHHHhCCCCch
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhhc
Q 024709 85 AEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCRE 133 (264)
Q Consensus 85 ae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~~ 133 (264)
||++||+||++||+||+|||+|||+|+||+|||++|++|++++|+.+.+
T Consensus 296 aEv~Dv~nav~dg~d~vmLs~ETa~G~~p~~~v~~~~~i~~~~E~~~~~ 344 (348)
T PF00224_consen 296 AEVSDVANAVLDGADAVMLSGETAIGKYPVEAVKTMARIIREAEKYLDY 344 (348)
T ss_dssp HHHHHHHHHHHHT-SEEEESHHHHTSSSHHHHHHHHHHHHHHHHHTS-H
T ss_pred HHHhhHHHHHHcCCCEEEecCCcCCCCCHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999999999999999997654
No 17
>PRK14725 pyruvate kinase; Provisional
Probab=100.00 E-value=1.5e-43 Score=346.44 Aligned_cols=121 Identities=36% Similarity=0.586 Sum_probs=117.9
Q ss_pred CcceEEEeccCHHHHhcHHHHHhhc-----ceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhC
Q 024709 5 VNIAVIAKIESIDSLKNLNEIILAS-----DGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEY 79 (264)
Q Consensus 5 ~~~~iiakIE~~~~~~n~~eI~~~~-----Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~ 79 (264)
.++.||+||||++|++||+||+.++ |||||||||||+|+|+++||.+||+||++|+++|||||+||||||||+++
T Consensus 472 ~~~~IiaKIEt~~av~nL~eIl~~am~~~~DGIMIARGDLgvEi~~e~lp~iQk~Ii~~c~~~~kPVI~ATQmLESM~~~ 551 (608)
T PRK14725 472 DDLGVVLKIETRRAFENLPRILLEAMRHPRFGVMIARGDLAVEVGFERLAEVQEEILWLCEAAHVPVIWATQVLESLAKK 551 (608)
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhhccCCCcEEEEECCccccccCHHHHHHHHHHHHHHHHHcCCCEEEEcchHhhhccC
Confidence 4789999999999999999999996 99999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhh
Q 024709 80 PIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWC 131 (264)
Q Consensus 80 ~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~ 131 (264)
|.|||||++||+||+ |+|||||| .|+||+|||++|++|+.++|++.
T Consensus 552 p~PTRAEvtDVAnAv--gaD~VMLS----~G~yPveAV~~l~~I~~r~e~~~ 597 (608)
T PRK14725 552 GLPSRAEITDAAMAL--RAECVMLN----KGPHIVEAVRVLDDILRRMEEHQ 597 (608)
T ss_pred CCCCchhHHHHHhhh--cCCEEeec----CCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999 99999999 99999999999999999999753
No 18
>PRK08187 pyruvate kinase; Validated
Probab=100.00 E-value=9.3e-41 Score=323.61 Aligned_cols=120 Identities=33% Similarity=0.594 Sum_probs=117.2
Q ss_pred CcceEEEeccCHHHHhcHHHHHhhcc-----eeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhC
Q 024709 5 VNIAVIAKIESIDSLKNLNEIILASD-----GAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEY 79 (264)
Q Consensus 5 ~~~~iiakIE~~~~~~n~~eI~~~~D-----gi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~ 79 (264)
.++.||+||||++|++|++||+.++| ||||||||||+|+|.+++|.+|++|+.+|+++|||||+||||||||+++
T Consensus 355 ~~~~IIaKIET~~gv~Nl~eI~~~ad~~~v~GImiARGDLgvEig~e~~p~~Qk~II~~craagkpvI~ATQmLESM~~~ 434 (493)
T PRK08187 355 RKLGLVLKIETPRAVANLPELIVQAAGRQPFGVMIARGDLAVEIGFERLAEMQEEILWLCEAAHVPVIWATQVLEGLVKK 434 (493)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHhCcCCCcEEEEEchHhhhhcCcccChHHHHHHHHHHHHhCCCeEEEchhhHhhccC
Confidence 47899999999999999999999888 9999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhh
Q 024709 80 PIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKW 130 (264)
Q Consensus 80 ~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~ 130 (264)
|.|||||++||||+ ||+|||||| .|+||+|||++|++|+.++|++
T Consensus 435 p~PTRAEvtDvAna--dgaDavMLs----~G~ypveaV~~l~~I~~~~e~~ 479 (493)
T PRK08187 435 GLPSRAEMTDAAMA--ARAECVMLN----KGPYLVEAVTFLDDLLARMDGH 479 (493)
T ss_pred CCCchHHHHHHHhh--cCCCEEeec----CCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999997 999999999 9999999999999999999985
No 19
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=99.97 E-value=1.2e-30 Score=208.95 Aligned_cols=109 Identities=37% Similarity=0.640 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHhhcCCCCcEEEEcCChhhhhhcccccccEEEEecCCC-CHHHHHHHH
Q 024709 154 PGEICNGAAKIANKLKASALFVYTKTGQMASLLSRSRPDCPIFAFAPMSSVRRRLNLQWGLVPFCLNFSD-DMESNLNQT 232 (264)
Q Consensus 154 ~~aIA~aAv~lA~~l~A~aIVv~T~sG~tA~~iSr~RP~~PIiAvT~~~~~aR~L~L~~GV~P~~~~~~~-~~e~~i~~a 232 (264)
+|+++.+++++|+++++++||++|+||+||+++|||||.+|||++|++++++|||+|+|||+|++++... +.++++..+
T Consensus 1 Teaia~aa~~~A~~~~ak~Ivv~T~sG~ta~~isk~RP~~pIiavt~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~a 80 (117)
T PF02887_consen 1 TEAIARAAVELAEDLNAKAIVVFTESGRTARLISKYRPKVPIIAVTPNESVARQLSLYWGVYPVLIEEFDKDTEELIAEA 80 (117)
T ss_dssp HHHHHHHHHHHHHHHTESEEEEE-SSSHHHHHHHHT-TSSEEEEEESSHHHHHHGGGSTTEEEEECSSHSHSHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCchHHHHHHhhCCCCeEEEEcCcHHHHhhhhcccceEEEEeccccccHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999999999999998777 899999999
Q ss_pred HHHHHHcCCCCCCCEEEEEec-------CCceEEEEE
Q 024709 233 FSLLKARGLIKSGDLIIVVSD-------MLQCIQVIN 262 (264)
Q Consensus 233 l~~~~~~g~~~~GD~VVvvsG-------~~~~i~v~~ 262 (264)
+++++++|++++||.||+++| .+|+++|++
T Consensus 81 ~~~~~~~g~~~~gd~vVv~~g~~~~~~g~tn~~~v~~ 117 (117)
T PF02887_consen 81 LEYAKERGLLKPGDKVVVVAGMPFGTPGGTNTIRVVR 117 (117)
T ss_dssp HHHHHHTTSS-TTSEEEEEEESSTTTTSSEEEEEEEE
T ss_pred HHHHHHcCCCCCCCEEEEEeCCCCCCCCCCEEEEEEC
Confidence 999999999999999999999 399999975
No 20
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=7.9e-15 Score=129.36 Aligned_cols=92 Identities=22% Similarity=0.294 Sum_probs=84.1
Q ss_pred CCCCcceEEEeccCHHHHhcHHHHHhh--cceeeecCCCcccCCCC------CChHHHHHHHHHHHHHhCCCEEEEhhhh
Q 024709 2 SSLVNIAVIAKIESIDSLKNLNEIILA--SDGAMVARGDLGAQVPL------EQVPSIQEKIVQLCRQLNKPVIVASQLL 73 (264)
Q Consensus 2 ~~~~~~~iiakIE~~~~~~n~~eI~~~--~Dgi~i~rgdL~~~~~~------~~v~~~qk~ii~~~~~~gkpv~~atq~l 73 (264)
++|+++++++||||++|++|||+|+++ +|||||||+||+.++|. ++|..+...++.+.+++||..++
T Consensus 140 ~An~~~~~lvqiEtr~gl~nLDaIaaveGVDgvFiGPaDLaas~G~~gn~~hpeV~~aI~~~~~~i~aaGKaagi----- 214 (255)
T COG3836 140 QANDEICLLVQIETRAGLDNLDAIAAVEGVDGVFIGPADLAASLGHLGNPGHPEVQAAIEHIIARIRAAGKAAGI----- 214 (255)
T ss_pred hcccceEEEEEEccHHHHHHHHHHHccCCCCeEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHhcCCcccc-----
Confidence 579999999999999999999999999 99999999999999996 78999999999999999999998
Q ss_pred hhhhhCCCCChHHHHHHHHHHHhccccccccccc
Q 024709 74 ESMIEYPIPTRAEVADVSELVRQQADALMLSGES 107 (264)
Q Consensus 74 eSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~et 107 (264)
..+.|..+ ..++..|+.++.++.||
T Consensus 215 ----l~~~p~~a-----~~yl~lGa~fvavG~D~ 239 (255)
T COG3836 215 ----LAADPADA-----RRYLALGATFVAVGSDT 239 (255)
T ss_pred ----ccCCHHHH-----HHHHHhCCeEEEEeccH
Confidence 34566655 78999999999999885
No 21
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=99.49 E-value=2.2e-14 Score=130.38 Aligned_cols=92 Identities=21% Similarity=0.266 Sum_probs=81.4
Q ss_pred CCCCcceEEEeccCHHHHhcHHHHHhh--cceeeecCCCcccCCCC------CChHHHHHHHHHHHHHhCCCEEEEhhhh
Q 024709 2 SSLVNIAVIAKIESIDSLKNLNEIILA--SDGAMVARGDLGAQVPL------EQVPSIQEKIVQLCRQLNKPVIVASQLL 73 (264)
Q Consensus 2 ~~~~~~~iiakIE~~~~~~n~~eI~~~--~Dgi~i~rgdL~~~~~~------~~v~~~qk~ii~~~~~~gkpv~~atq~l 73 (264)
++|+++.+++||||++|++|+|||+++ .|++++|++||+.+++. +++..+.++++++|+++|||+++.
T Consensus 141 ~an~~~~vi~qiEt~~a~~n~~~I~~~~gvd~i~~G~~Dls~slg~~~~~~~pev~~ai~~v~~a~~~~Gk~~G~~---- 216 (267)
T PRK10128 141 QANDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFL---- 216 (267)
T ss_pred HhccccEEEEEECCHHHHHhHHHHhCCCCCCEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEc----
Confidence 468999999999999999999999999 99999999999999985 789999999999999999999962
Q ss_pred hhhhhCCCCChHHHHHHHHHHHhccccccccccc
Q 024709 74 ESMIEYPIPTRAEVADVSELVRQQADALMLSGES 107 (264)
Q Consensus 74 eSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~et 107 (264)
.+.|. +...++..|++.+.++.|+
T Consensus 217 -----~~~~~-----~a~~~~~~G~~~v~~g~D~ 240 (267)
T PRK10128 217 -----AVDPD-----MAQKCLAWGANFVAVGVDT 240 (267)
T ss_pred -----CCCHH-----HHHHHHHcCCcEEEEChHH
Confidence 23333 3478899999999999885
No 22
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=99.44 E-value=7.7e-14 Score=125.70 Aligned_cols=93 Identities=24% Similarity=0.313 Sum_probs=80.9
Q ss_pred CCCCcceEEEeccCHHHHhcHHHHHhh--cceeeecCCCcccCCCC------CChHHHHHHHHHHHHHhCCCEEEEhhhh
Q 024709 2 SSLVNIAVIAKIESIDSLKNLNEIILA--SDGAMVARGDLGAQVPL------EQVPSIQEKIVQLCRQLNKPVIVASQLL 73 (264)
Q Consensus 2 ~~~~~~~iiakIE~~~~~~n~~eI~~~--~Dgi~i~rgdL~~~~~~------~~v~~~qk~ii~~~~~~gkpv~~atq~l 73 (264)
+.|+++.++++|||++|++|+|||+++ +|++++|++||+.+++. +++..+..+++.+|+++|||+++.
T Consensus 134 ~~n~~~~vi~~IEt~~av~n~~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~a~G~~~g~~---- 209 (249)
T TIGR03239 134 TINDNITVLVQIESQKGVDNVDEIAAVDGVDGIFVGPSDLAAALGHLGNPNHPDVQKAIRHIFDRAAAHGKPCGIL---- 209 (249)
T ss_pred HhccccEEEEEECCHHHHHhHHHHhCCCCCCEEEEChHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEc----
Confidence 468899999999999999999999998 99999999999999986 578888899999999999999972
Q ss_pred hhhhhCCCCChHHHHHHHHHHHhcccccccccccc
Q 024709 74 ESMIEYPIPTRAEVADVSELVRQQADALMLSGESA 108 (264)
Q Consensus 74 eSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta 108 (264)
.+.|. +...++..|++.++++.|+.
T Consensus 210 -----~~~~~-----~~~~~~~~G~~~~~~~~D~~ 234 (249)
T TIGR03239 210 -----APVEA-----DARRYLEWGATFVAVGSDLG 234 (249)
T ss_pred -----CCCHH-----HHHHHHHcCCCEEEEhHHHH
Confidence 23443 44788999999999998854
No 23
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=99.43 E-value=9.8e-14 Score=125.49 Aligned_cols=93 Identities=25% Similarity=0.333 Sum_probs=80.2
Q ss_pred CCCCcceEEEeccCHHHHhcHHHHHhh--cceeeecCCCcccCCCC------CChHHHHHHHHHHHHHhCCCEEEEhhhh
Q 024709 2 SSLVNIAVIAKIESIDSLKNLNEIILA--SDGAMVARGDLGAQVPL------EQVPSIQEKIVQLCRQLNKPVIVASQLL 73 (264)
Q Consensus 2 ~~~~~~~iiakIE~~~~~~n~~eI~~~--~Dgi~i~rgdL~~~~~~------~~v~~~qk~ii~~~~~~gkpv~~atq~l 73 (264)
+.|+++.++++|||++|++|+|||+++ +|++|+|++||+.++|. +++..+.++++.+|+++|||+++.
T Consensus 141 ~an~~~~vi~~IEt~~av~ni~eI~av~gvd~l~iG~~DLs~slG~~~~~~~~~v~~a~~~v~~aa~~~G~~~g~~---- 216 (256)
T PRK10558 141 QSNKNITVLVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFARAKAHGKPSGIL---- 216 (256)
T ss_pred HhccccEEEEEECCHHHHHHHHHHhCCCCCcEEEECHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHcCCceEEc----
Confidence 468899999999999999999999998 99999999999999985 468888899999999999999962
Q ss_pred hhhhhCCCCChHHHHHHHHHHHhcccccccccccc
Q 024709 74 ESMIEYPIPTRAEVADVSELVRQQADALMLSGESA 108 (264)
Q Consensus 74 eSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta 108 (264)
.+.| .+...++..|++.+.++.|+.
T Consensus 217 -----~~~~-----~~~~~~~~~G~~~v~~~~D~~ 241 (256)
T PRK10558 217 -----APVE-----ADARRYLEWGATFVAVGSDLG 241 (256)
T ss_pred -----CCCH-----HHHHHHHHcCCCEEEEchHHH
Confidence 2233 234788899999999998854
No 24
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=99.34 E-value=8.6e-13 Score=118.86 Aligned_cols=92 Identities=18% Similarity=0.283 Sum_probs=79.4
Q ss_pred CCCCcceEEEeccCHHHHhcHHHHHhh--cceeeecCCCcccCCCC------CChHHHHHHHHHHHHHhCCCEEEEhhhh
Q 024709 2 SSLVNIAVIAKIESIDSLKNLNEIILA--SDGAMVARGDLGAQVPL------EQVPSIQEKIVQLCRQLNKPVIVASQLL 73 (264)
Q Consensus 2 ~~~~~~~iiakIE~~~~~~n~~eI~~~--~Dgi~i~rgdL~~~~~~------~~v~~~qk~ii~~~~~~gkpv~~atq~l 73 (264)
++|+++.++++|||++|++|+|||+++ .|++|+|++||+.++|. +++..+.++++++|+++||+.++..
T Consensus 135 ~~n~~~~vi~~IEt~~av~n~~eI~a~~gvd~l~~G~~DLs~slG~~~~~~~~~~~~a~~~v~~~~~~a~~~~Gi~~--- 211 (249)
T TIGR02311 135 QADEEICVLLQVETREALDNLEEIAAVEGVDGVFIGPADLAASMGHLGNPSHPEVQAAIDDAIERIKAAGKAAGILT--- 211 (249)
T ss_pred HhhhceEEEEEecCHHHHHHHHHHHCCCCCcEEEECHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHcCCceeecC---
Confidence 357789999999999999999999998 99999999999999996 4667788899999999999999722
Q ss_pred hhhhhCCCCChHHHHHHHHHHHhccccccccccc
Q 024709 74 ESMIEYPIPTRAEVADVSELVRQQADALMLSGES 107 (264)
Q Consensus 74 eSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~et 107 (264)
..|.. ...++..|++.++++.|+
T Consensus 212 ------~~~~~-----~~~~~~~G~~~~~~~~D~ 234 (249)
T TIGR02311 212 ------ADPKL-----ARQYLKLGALFVAVGVDT 234 (249)
T ss_pred ------CCHHH-----HHHHHHcCCCEEEEchHH
Confidence 33433 368899999999999884
No 25
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=99.06 E-value=3.2e-10 Score=116.92 Aligned_cols=108 Identities=19% Similarity=0.138 Sum_probs=89.4
Q ss_pred CCCcceEEEeccCHHHHhcHHHHHhhcceeeecCCCccc-CCC---------------CCChHHHHHHHHHHHHHhCCCE
Q 024709 3 SLVNIAVIAKIESIDSLKNLNEIILASDGAMVARGDLGA-QVP---------------LEQVPSIQEKIVQLCRQLNKPV 66 (264)
Q Consensus 3 ~~~~~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~-~~~---------------~~~v~~~qk~ii~~~~~~gkpv 66 (264)
.|+++++++|||+++|+.|+|+|++++|+++||++||+. .++ .|.|..+.++++++|+++|||+
T Consensus 666 ~~~~~~vg~MIEtp~av~~~deIa~~vDfi~IGtnDLtq~~lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa~~~g~~v 745 (795)
T PRK06464 666 GENGLKVIMMCEIPSNALLAEEFLEYFDGFSIGSNDLTQLTLGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKAGKYV 745 (795)
T ss_pred cccCcEEEEEEcCHHHHHHHHHHHHhCCEEEECchHHHHHHhCcCCCchhhhhccCCCCHHHHHHHHHHHHHHHHcCCEE
Confidence 456899999999999999999999999999999999996 333 2789999999999999999999
Q ss_pred EEEhhhhhhhhhCCC-CChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhh
Q 024709 67 IVASQLLESMIEYPI-PTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKW 130 (264)
Q Consensus 67 ~~atq~leSM~~~~~-ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~ 130 (264)
+++.+|. .. |..+ ...+..|++.+..+.+ ++-.+++.+.++|+.
T Consensus 746 gicge~a------~~~p~~~-----~~l~~~G~~~ls~~~d---------~~~~~k~~i~~~~~~ 790 (795)
T PRK06464 746 GICGQAP------SDHPDFA-----EWLVEEGIDSISLNPD---------AVVDTWLAVAEVEKK 790 (795)
T ss_pred EEcCCCC------CCcHHHH-----HHHHHCCCCEEEEcch---------hHHHHHHHHHHhHHH
Confidence 9977654 23 4444 5678899999999865 666677777777763
No 26
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=99.05 E-value=3.8e-10 Score=116.21 Aligned_cols=108 Identities=19% Similarity=0.172 Sum_probs=86.9
Q ss_pred CCCcceEEEeccCHHHHhcHHHHHhhcceeeecCCCccc-CCC---------------CCChHHHHHHHHHHHHHhCCCE
Q 024709 3 SLVNIAVIAKIESIDSLKNLNEIILASDGAMVARGDLGA-QVP---------------LEQVPSIQEKIVQLCRQLNKPV 66 (264)
Q Consensus 3 ~~~~~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~-~~~---------------~~~v~~~qk~ii~~~~~~gkpv 66 (264)
.|+++.+++|||+++|+.|+|+|++++|+++||++||+. .++ .+.|..+.++++++|+++|||+
T Consensus 659 ~~~~~~vg~mIEtp~av~~~d~Ia~~vDfisIGtnDLtq~~lg~dR~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g~~v 738 (782)
T TIGR01418 659 GKNGLEVYVMCEVPSNALLADEFAKEFDGFSIGSNDLTQLTLGVDRDSGLVAHLFDERNPAVLRLIEMAIKAAKEHGKKV 738 (782)
T ss_pred cccCcEEEEEECcHHHHHHHHHHHHhCCEEEECchHHHHHHhCccCCchhhcccCCCCCHHHHHHHHHHHHHHHhcCCeE
Confidence 456699999999999999999999999999999999997 433 2789999999999999999999
Q ss_pred EEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHh
Q 024709 67 IVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEK 129 (264)
Q Consensus 67 ~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~ 129 (264)
+++.+|-. ..|..+ .-++..|+|.+..+.+ .+..++..++++|+
T Consensus 739 gicge~~~-----~~p~~~-----~~l~~~G~~~ls~~~d---------~~~~~k~~i~~~e~ 782 (782)
T TIGR01418 739 GICGQAPS-----DYPEVV-----EFLVEEGIDSISLNPD---------AVLRTRLQVAEVEK 782 (782)
T ss_pred EEeCCCCC-----CCHHHH-----HHHHHcCCCEEEECcc---------hHHHHHHHHHHhcC
Confidence 99764320 024333 6788899999999866 55566666666663
No 27
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=99.01 E-value=7.7e-11 Score=103.84 Aligned_cols=92 Identities=26% Similarity=0.296 Sum_probs=71.6
Q ss_pred CCcceEEEeccCHHHHhcHHHHHhh--cceeeecCCCcccCCCC------CChHHHHHHHHHHHHHhCCCEEEEhhhhhh
Q 024709 4 LVNIAVIAKIESIDSLKNLNEIILA--SDGAMVARGDLGAQVPL------EQVPSIQEKIVQLCRQLNKPVIVASQLLES 75 (264)
Q Consensus 4 ~~~~~iiakIE~~~~~~n~~eI~~~--~Dgi~i~rgdL~~~~~~------~~v~~~qk~ii~~~~~~gkpv~~atq~leS 75 (264)
|.++.++++|||++|++|++||+++ .|++++|++||+.++|. +++..+.++++.+|+++|||.+-.
T Consensus 117 ~~~~~i~~~IET~~gv~~~~eI~a~~~v~~l~~G~~Dls~~lG~~~~~~~~~~~~a~~~v~~aa~a~g~~~i~~------ 190 (221)
T PF03328_consen 117 NGSTKIIPMIETPEGVENLEEIAAVPGVDGLFFGPADLSASLGIPGQPDHPEVLEARSKVVLAARAAGKPAIDG------ 190 (221)
T ss_dssp HCHSEEEEEE-SHHHHHTHHHHHTSTTEEEEEE-HHHHHHHTTTTTSTTSHHHHHHHHHHHHHHHHTTEEEEEE------
T ss_pred cCceEEEEeeccHHHHhCHHhhcccCCeeEEEeCcHHHHhhhccCCCCcchHHHHHHHHHHHHHHHcCCCeEEE------
Confidence 6789999999999999999999977 89999999999999987 458888999999999999965431
Q ss_pred hhhCCCCChHH--HHHHHHHHHhccccccc
Q 024709 76 MIEYPIPTRAE--VADVSELVRQQADALML 103 (264)
Q Consensus 76 M~~~~~ptrae--~~dv~~~v~~g~d~~~l 103 (264)
..+.+..++ ..++.++...|+|+-++
T Consensus 191 --~~~~~~d~~~~~~~~~~~~~~G~dg~~~ 218 (221)
T PF03328_consen 191 --VFPDFEDAEGLEAEGFRARALGFDGKLC 218 (221)
T ss_dssp --EESSSSHHHHHHHHHHHCCEEEEHHCCC
T ss_pred --eeCCHHHHHHHHHHHHHHHHHccccccc
Confidence 123444444 25677777777776544
No 28
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=98.73 E-value=2.4e-08 Score=99.72 Aligned_cols=91 Identities=14% Similarity=0.033 Sum_probs=77.7
Q ss_pred CCCcceEEEeccCHHHHhcHHHHHhhcceeeecCCCcccC----------CC------CCChHHHHHHHHHHHHHhCCCE
Q 024709 3 SLVNIAVIAKIESIDSLKNLNEIILASDGAMVARGDLGAQ----------VP------LEQVPSIQEKIVQLCRQLNKPV 66 (264)
Q Consensus 3 ~~~~~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~----------~~------~~~v~~~qk~ii~~~~~~gkpv 66 (264)
.|.++.+.+|||++.|+.|+|+|++.+|+++||+.||+.. ++ .|.|..+.++++++|+++||||
T Consensus 419 ~~~~~~vg~mIEtpaav~~~d~ia~~vDf~sIGtnDLsqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v 498 (565)
T TIGR01417 419 FDENIEVGVMIEIPSAALIADHLAKEVDFFSIGTNDLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWV 498 (565)
T ss_pred cccCcEEEEEEcCHHHHHhHHHHHhhCCEEEEChhHHHHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeE
Confidence 4678999999999999999999999999999999999872 44 3788899999999999999999
Q ss_pred EEEhhhhhhhhhCCCCChHHHHHHHHHHHhcccccccc
Q 024709 67 IVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLS 104 (264)
Q Consensus 67 ~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls 104 (264)
+++.+|- ..|. .+..++..|++.+..+
T Consensus 499 ~vCGe~a------~~p~-----~~~~l~~~G~~~lsv~ 525 (565)
T TIGR01417 499 GMCGEMA------GDER-----AIPLLLGLGLRELSMS 525 (565)
T ss_pred EEeCCcC------CCHH-----HHHHHHHCCCCEEEEC
Confidence 9876543 3443 3468889999998877
No 29
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=98.63 E-value=4.5e-08 Score=97.82 Aligned_cols=91 Identities=12% Similarity=0.021 Sum_probs=78.6
Q ss_pred CCCcceEEEeccCHHHHhcHHHHHhhcceeeecCCCcccCC-----C-----------CCChHHHHHHHHHHHHHhCCCE
Q 024709 3 SLVNIAVIAKIESIDSLKNLNEIILASDGAMVARGDLGAQV-----P-----------LEQVPSIQEKIVQLCRQLNKPV 66 (264)
Q Consensus 3 ~~~~~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~-----~-----------~~~v~~~qk~ii~~~~~~gkpv 66 (264)
.|+++.+.+|||++.|+.|+|+|++.+|+++||+.||+.-+ + .|.|..+.++++++|+++|||+
T Consensus 420 ~~~~~~~g~mIE~p~a~~~~d~i~~~vDf~sIGtnDL~qy~la~dr~n~~v~~~~~~~hPav~~~i~~v~~~a~~~g~~v 499 (575)
T PRK11177 420 FDESIEIGVMVETPAAAVIARHLAKEVDFFSIGTNDLTQYTLAVDRGNELISHLYNPMSPSVLNLIKQVIDASHAEGKWT 499 (575)
T ss_pred cCCCcEEEEEEeCHHHHHhHHHHHhhCCEEEECcHHHHHHHHHhccCCchhhccCCCCCHHHHHHHHHHHHHHHhcCCeE
Confidence 46789999999999999999999999999999999999832 1 3789999999999999999999
Q ss_pred EEEhhhhhhhhhCCCCChHHHHHHHHHHHhcccccccc
Q 024709 67 IVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLS 104 (264)
Q Consensus 67 ~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls 104 (264)
+++.+|= ..|... .-.+..|.|-+-.|
T Consensus 500 ~vCGe~A------~dp~~~-----~lLlglGi~~lSm~ 526 (575)
T PRK11177 500 GMCGELA------GDERAT-----LLLLGMGLDEFSMS 526 (575)
T ss_pred EEeCCCC------CCHHHH-----HHHHHCCCCeEEEC
Confidence 9999865 456444 56788899987776
No 30
>TIGR01588 citE citrate lyase, beta subunit. This is a model of the beta subunit of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The beta subunit catalyzes the reaction (3S)-citryl-CoA = acetyl-CoA + oxaloacetate. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=98.54 E-value=1.4e-07 Score=86.82 Aligned_cols=91 Identities=16% Similarity=0.115 Sum_probs=72.4
Q ss_pred CCCcceEEEeccCHHHHhcHHHHHhh---cceeeecCCCcccCCCC------CChHHHHHHHHHHHHHhCCCEEEEhhhh
Q 024709 3 SLVNIAVIAKIESIDSLKNLNEIILA---SDGAMVARGDLGAQVPL------EQVPSIQEKIVQLCRQLNKPVIVASQLL 73 (264)
Q Consensus 3 ~~~~~~iiakIE~~~~~~n~~eI~~~---~Dgi~i~rgdL~~~~~~------~~v~~~qk~ii~~~~~~gkpv~~atq~l 73 (264)
.+.++.++++|||++|+.|++||++. +||+++|+.||+.++|. +++..+..+++..|+.+|+|+|
T Consensus 117 ~~~~~~i~~~IET~~gv~~~~eIa~a~~rv~~l~~G~~Dls~~lG~~~~~~~~~~~~ar~~iv~aaraag~~~i------ 190 (288)
T TIGR01588 117 EVGSTKLMAAIESALGVVNAVEIARASKRLMGIALGAEDYVTDMKTSRSPDGTELFYARCAILHAARAAGIAAF------ 190 (288)
T ss_pred CCCCeeEEEEeCCHHHHHhHHHHHhcCCcceEEEeCHHHHHHHcCCCcCCCchHHHHHHHHHHHHHHHcCCCcc------
Confidence 35678999999999999999999954 78999999999999986 3577888999999999999985
Q ss_pred hhhhhCCCCChHH----HHHHHHHHHhccccccc
Q 024709 74 ESMIEYPIPTRAE----VADVSELVRQQADALML 103 (264)
Q Consensus 74 eSM~~~~~ptrae----~~dv~~~v~~g~d~~~l 103 (264)
..+.+.... ..+..++...|+++=+.
T Consensus 191 ----d~v~~~~~d~~~l~~~~~~~~~~Gf~Gk~~ 220 (288)
T TIGR01588 191 ----DTVYSDVNNEEGFLAEAQLIKQLGFDGKSL 220 (288)
T ss_pred ----cCCccCcCCHHHHHHHHHHHHHcCCCceec
Confidence 223333221 24666788888887554
No 31
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. The sequence around that residue is highly conserved. This domain is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus and the PEP-utilizing enzyme mobile domain.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2HRO_A 2OLS_A 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2BG5_B ....
Probab=97.51 E-value=0.00018 Score=66.49 Aligned_cols=92 Identities=17% Similarity=0.145 Sum_probs=72.0
Q ss_pred CCcceEEEeccCHHHHhcHHHHHhhcceeeecCCCcccC--------------C--CCCChHHHHHHHHHHHHHhCCCEE
Q 024709 4 LVNIAVIAKIESIDSLKNLNEIILASDGAMVARGDLGAQ--------------V--PLEQVPSIQEKIVQLCRQLNKPVI 67 (264)
Q Consensus 4 ~~~~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~--------------~--~~~~v~~~qk~ii~~~~~~gkpv~ 67 (264)
+..+.+=+|||+|.+.-.+|++++.+|.+-||-.||.-- . -.+-|....++++++|+++||||.
T Consensus 173 ~~~~~vG~MiEvPsaal~~~~~~~~~DF~SIGtNDLtQy~la~DR~n~~v~~~~d~~~Pavl~li~~vi~~a~~~g~~vs 252 (293)
T PF02896_consen 173 DPDLPVGIMIEVPSAALMADEFAKEVDFFSIGTNDLTQYTLAADRDNARVAYLYDPLHPAVLRLIKQVIDAAHKAGKPVS 252 (293)
T ss_dssp GTT-EEEEEE-SHHHHHTHHHHHTTSSEEEEEHHHHHHHHHTS-TTCCTCGGGS-TTSHHHHHHHHHHHHHHHHTT-EEE
T ss_pred cccceEEEEechhHHHHHHHHHHHHCCEEEEChhHHHHHHhhcCCCCcchhhhcCcchHHHHHHHHHHHHHHhhcCcEEE
Confidence 567899999999999999999999999999998888321 1 126788888999999999999999
Q ss_pred EEhhhhhhhhhCCCCChHHHHHHHHHHHhcccccccccc
Q 024709 68 VASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGE 106 (264)
Q Consensus 68 ~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~e 106 (264)
++.+|-. .|..+ .-.+..|.|.+..+..
T Consensus 253 vCGe~a~------~p~~~-----~~Ll~lGi~~lSv~p~ 280 (293)
T PF02896_consen 253 VCGEMAS------DPEAI-----PLLLGLGIRSLSVSPD 280 (293)
T ss_dssp EESGGGG------SHHHH-----HHHHHHT-SEEEE-GG
T ss_pred EecCCCC------CHHHH-----HHHHHcCCCEEEECHH
Confidence 9998762 55444 5788899999988844
No 32
>cd00480 malate_synt Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=97.15 E-value=0.00074 Score=66.91 Aligned_cols=100 Identities=17% Similarity=0.162 Sum_probs=70.3
Q ss_pred CcceEEEeccCHHHHhcHHHHHhh----cceeeecCCCcccCCCCC-------------------C-hHHHHHHHHHHHH
Q 024709 5 VNIAVIAKIESIDSLKNLNEIILA----SDGAMVARGDLGAQVPLE-------------------Q-VPSIQEKIVQLCR 60 (264)
Q Consensus 5 ~~~~iiakIE~~~~~~n~~eI~~~----~Dgi~i~rgdL~~~~~~~-------------------~-v~~~qk~ii~~~~ 60 (264)
..+++++.|||..|+-|++||+.. +.|+..||.|+..+++.. . +..+++.++..|+
T Consensus 218 gtiki~vlIET~~a~~~~~eIa~alr~rv~gLn~G~~Dy~~sli~~~~~~~~~~~pd~~~~~m~~~~l~ay~~~lv~aa~ 297 (511)
T cd00480 218 GTIKATVLIETLPAAFEMDEILYELRDHSAGLNCGRWDYIFSEIKTFRNHPDFVLPDRAKVTMTSPFMRAYEKLLVKTCH 297 (511)
T ss_pred CCeeEEEEECCHHHHHHHHHHHHhccCcceeeecChHHHHHHhccccccCccccCCcccccccccHHHHHHHHHHHHHHH
Confidence 468999999999999999999987 569999999999988531 1 4456788999999
Q ss_pred HhCCCEE--EEhhhh-hhhhhCCCCChHH-HHHHHHHHHhcccccccc
Q 024709 61 QLNKPVI--VASQLL-ESMIEYPIPTRAE-VADVSELVRQQADALMLS 104 (264)
Q Consensus 61 ~~gkpv~--~atq~l-eSM~~~~~ptrae-~~dv~~~v~~g~d~~~ls 104 (264)
++|.+.| ++.|+- .-|-..+....+. ..|...+..+|+|+-+.-
T Consensus 298 a~G~~AIdg~~a~i~~k~d~~~~~~d~~gl~~dk~~~~~~GfdGkwvi 345 (511)
T cd00480 298 RRGAHAMGGMAAQIPIKGDPAANEAAMAKVRADKLREAKAGHDGTWVA 345 (511)
T ss_pred HcCCCccccchhhccccCCcccchhHHHHHHHHHHHHHhCCCCccccc
Confidence 9999874 222211 0000000002222 257778899999997775
No 33
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi. Prokaryotic MSAs tend to be monomeric, whereas eukaryotic enzymes are homomultimers. In general, malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their carbon requirements from two-carbon compounds, by bypassing the two carboxylation steps of the citric acid cycle.
Probab=96.77 E-value=0.0025 Score=63.07 Aligned_cols=93 Identities=19% Similarity=0.223 Sum_probs=69.6
Q ss_pred CcceEEEeccCHHHHhcHHHHHhh----cceeeecCCCcccCCC----C-------C--------ChHH-HHHHHHHHHH
Q 024709 5 VNIAVIAKIESIDSLKNLNEIILA----SDGAMVARGDLGAQVP----L-------E--------QVPS-IQEKIVQLCR 60 (264)
Q Consensus 5 ~~~~iiakIE~~~~~~n~~eI~~~----~Dgi~i~rgdL~~~~~----~-------~--------~v~~-~qk~ii~~~~ 60 (264)
..+++.++|||..|+-|++||+.. +.|+..||.|+..+++ . + .+.. +++.++..|+
T Consensus 218 GtIki~vLIET~~A~~nm~EIa~alr~Rl~gLn~G~~Dy~~sli~~~~~~~~~v~pdr~~v~m~~~~l~Ay~~llV~aa~ 297 (511)
T cd00727 218 GTIKATVLIETLPAAFEMDEILYELRDHSAGLNCGRWDYIFSFIKKFRNHPDFVLPDRAQVTMTVPFMRAYSELLIKTCH 297 (511)
T ss_pred CceEEEEEecCHHHHHHHHHHHHhccCceEEEEcChHHHHHHHHHhhccCCCccCCcccccccchHHHHHHHHHHHHHHH
Confidence 568999999999999999999965 7899999999999882 1 1 2333 4677999999
Q ss_pred HhCCCEEEEhhhhhhhhhCCCCCh----------HH-HHHHHHHHHhcccccccc
Q 024709 61 QLNKPVIVASQLLESMIEYPIPTR----------AE-VADVSELVRQQADALMLS 104 (264)
Q Consensus 61 ~~gkpv~~atq~leSM~~~~~ptr----------ae-~~dv~~~v~~g~d~~~ls 104 (264)
++|...|- .|-. -.|.+ +. ..|-.....+|+|+-++-
T Consensus 298 a~G~~AId------Gm~a-~ip~kdd~~~n~~~l~~~r~dk~~~~~lGfDGkwvi 345 (511)
T cd00727 298 RRGAHAMG------GMAA-QIPIKDDPAANEAALAKVRADKLREATAGHDGTWVA 345 (511)
T ss_pred HcCCCccc------chhh-cCCcccchhhHHHHHHHHHHHHHHHHhCCCCccccc
Confidence 99999763 2311 12322 11 356777889999998875
No 34
>PRK09255 malate synthase; Validated
Probab=96.41 E-value=0.0076 Score=59.93 Aligned_cols=93 Identities=17% Similarity=0.199 Sum_probs=68.7
Q ss_pred CcceEEEeccCHHHHhcHHHHHhh----cceeeecCCCcccC----CCC----------------CChHHHHHHHHHHHH
Q 024709 5 VNIAVIAKIESIDSLKNLNEIILA----SDGAMVARGDLGAQ----VPL----------------EQVPSIQEKIVQLCR 60 (264)
Q Consensus 5 ~~~~iiakIE~~~~~~n~~eI~~~----~Dgi~i~rgdL~~~----~~~----------------~~v~~~qk~ii~~~~ 60 (264)
..+++.++|||..|+-|++||+.. +-|+..||.|+..+ ++. +-+..+++.++..|+
T Consensus 239 GtIki~vLIET~~A~~nm~EIa~a~r~Rl~gLn~G~~Dy~~S~ik~~~~~~~~~~pdR~~v~m~~~~l~Ay~~llV~aar 318 (531)
T PRK09255 239 GTIKATVLIETLPAAFEMDEILYELREHIAGLNCGRWDYIFSYIKTLKNHPDFVLPDRAQVTMTKPFMRAYSRLLIKTCH 318 (531)
T ss_pred CceEEEEEecCHHHHHHHHHHHHhccCceEEEEcChHHhhhhHHHHhccCCCCcCCcccccccchHHHHHHHHHHHHHHH
Confidence 568999999999999999999965 78999999999965 221 223334788889999
Q ss_pred HhCCCEEEEhhhhhhhhhCCCCCh----------HH-HHHHHHHHHhcccccccc
Q 024709 61 QLNKPVIVASQLLESMIEYPIPTR----------AE-VADVSELVRQQADALMLS 104 (264)
Q Consensus 61 ~~gkpv~~atq~leSM~~~~~ptr----------ae-~~dv~~~v~~g~d~~~ls 104 (264)
++|...|- -|- .-.|.+ +. ..|-.....+|+|+-++-
T Consensus 319 a~G~~AId------Gm~-a~ip~k~D~~~n~~a~~g~r~dk~r~~~lGfDGkwvi 366 (531)
T PRK09255 319 KRGAHAMG------GMA-AFIPIKNDPEANEAALAKVRADKEREANDGHDGTWVA 366 (531)
T ss_pred HcCCCccC------chh-hcCCcccChhhhHHHHHHHHHHHHHHHhCCCCcceec
Confidence 99999763 221 113311 12 257777899999998775
No 35
>TIGR01344 malate_syn_A malate synthase A. This model represents plant malate synthase and one of two bacterial forms, designated malate synthase A. The distantly related malate synthase G is described by a separate model. This enzyme and isocitrate lyase are the two characteristic enzymes of the glyoxylate shunt. The shunt enables the cell to use acetyl-CoA to generate increased levels of TCA cycle intermediates for biosynthetic pathways such as gluconeogenesis.
Probab=96.33 E-value=0.0035 Score=61.94 Aligned_cols=94 Identities=17% Similarity=0.196 Sum_probs=68.5
Q ss_pred CcceEEEeccCHHHHhcHHHHHhh----cceeeecCCCcccCCC----C----------------CChHHHHHHHHHHHH
Q 024709 5 VNIAVIAKIESIDSLKNLNEIILA----SDGAMVARGDLGAQVP----L----------------EQVPSIQEKIVQLCR 60 (264)
Q Consensus 5 ~~~~iiakIE~~~~~~n~~eI~~~----~Dgi~i~rgdL~~~~~----~----------------~~v~~~qk~ii~~~~ 60 (264)
..+++.++|||+.|+-|++||+.. +.|+..||.|+..++. . +-+..+++.++..|+
T Consensus 219 gtIk~~vlIET~~A~~nm~EIa~alr~Rl~gLn~G~~Dy~~S~ik~~~~~~~~~~pdr~~~~m~~~~l~Ay~~llV~aar 298 (511)
T TIGR01344 219 GTIKATVLIETLPAAFEMDEILYELREHISGLNCGRWDYIFSFIKTLRNLPEFVLPDRDAVTMTKPFLNAYSKLLIQTCH 298 (511)
T ss_pred CceeEEEEecCHHHHHhHHHHHHhccCceeEEEcChHHhhhhHHHHHhhCCCCcCCcccccccccHHHHHHHHHHHHHHH
Confidence 568899999999999999999975 7899999999994443 1 223345788889999
Q ss_pred HhCCCEEEEhhhhhhhhh-CC---CCCh-----HH-HHHHHHHHHhcccccccc
Q 024709 61 QLNKPVIVASQLLESMIE-YP---IPTR-----AE-VADVSELVRQQADALMLS 104 (264)
Q Consensus 61 ~~gkpv~~atq~leSM~~-~~---~ptr-----ae-~~dv~~~v~~g~d~~~ls 104 (264)
++|+..|= -|-. .| .|.- +. ..|-.....+|+|+-++-
T Consensus 299 a~G~~AId------Gm~a~ip~k~D~~~n~~al~~vr~dk~re~~lGfDGkwvi 346 (511)
T TIGR01344 299 RRGAHAMG------GMAAFIPIKGDPAANEAAMNKVRADKIREAKNGHDGTWVA 346 (511)
T ss_pred HcCCCccC------chhccCCcccChhhHHHHHHHHHHHHHHHHhCCCCccccC
Confidence 99998873 2211 11 1111 11 256777889999998775
No 36
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=96.03 E-value=0.013 Score=60.88 Aligned_cols=88 Identities=17% Similarity=0.069 Sum_probs=73.8
Q ss_pred cceEEEeccCHHHHhcHHHHHhhcceeeecCCCcccCC----------------CCCChHHHHHHHHHHHHHhCCCEEEE
Q 024709 6 NIAVIAKIESIDSLKNLNEIILASDGAMVARGDLGAQV----------------PLEQVPSIQEKIVQLCRQLNKPVIVA 69 (264)
Q Consensus 6 ~~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~----------------~~~~v~~~qk~ii~~~~~~gkpv~~a 69 (264)
++.+=+|||+|.++--+|++++.+|.+=||-.||.-=+ -.|-|-...+++++.|+++||||.+|
T Consensus 589 ~~~~G~MiE~Paa~~~~~~~a~~~DF~SIGtNDL~Qy~la~DR~n~~v~~~~~~~~Pavlr~i~~~~~~a~~~g~~v~vC 668 (748)
T PRK11061 589 KPRIGIMIEVPSMVFMLPHLASRVDFISVGTNDLTQYLLAVDRNNTRVASLYDSLHPAMLRALKMIADEAEQHGLPVSLC 668 (748)
T ss_pred CceEEEEEehHHHHHHHHHHHHhCCEEEECccHHHHHHHHhcCCChHHHhhcCCCCHHHHHHHHHHHHHHhhCcCEEEEc
Confidence 36788999999999999999999999999999995211 12788889999999999999999999
Q ss_pred hhhhhhhhhCCCCChHHHHHHHHHHHhcccccccc
Q 024709 70 SQLLESMIEYPIPTRAEVADVSELVRQQADALMLS 104 (264)
Q Consensus 70 tq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls 104 (264)
.+|= ..|... .-.+..|.|-+-.+
T Consensus 669 Ge~a------~dp~~~-----~~L~glGi~~lS~~ 692 (748)
T PRK11061 669 GEMA------GDPMGA-----LLLIGLGYRHLSMN 692 (748)
T ss_pred CCcc------cCHHHH-----HHHHHCCCcEEccC
Confidence 9875 356665 56788899887776
No 37
>COG2301 CitE Citrate lyase beta subunit [Carbohydrate transport and metabolism]
Probab=96.03 E-value=0.0061 Score=56.12 Aligned_cols=88 Identities=22% Similarity=0.171 Sum_probs=69.7
Q ss_pred EEEeccCHHHHhcHHHHHhhc---ceeeecCCCcccCCCCC-------ChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhh
Q 024709 9 VIAKIESIDSLKNLNEIILAS---DGAMVARGDLGAQVPLE-------QVPSIQEKIVQLCRQLNKPVIVASQLLESMIE 78 (264)
Q Consensus 9 iiakIE~~~~~~n~~eI~~~~---Dgi~i~rgdL~~~~~~~-------~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~ 78 (264)
+++.|||++|+.|..||...+ .|+.+|-.||..+++.. .+..+-.+|+..|+.+|++.+= + +.
T Consensus 114 l~a~iETa~gv~~~~eIA~a~~~l~~l~~Ga~Dl~~~~g~~~~~~~~~~l~~ar~~iv~Aara~Gi~a~D-~------V~ 186 (283)
T COG2301 114 LIALIETARGVLNAEEIAAASGRLVGLAFGANDLAADLGARRSPDGTDPLRYARAMIVLAARAAGLAAID-G------VY 186 (283)
T ss_pred hHHhhhcHHHHhCHHHHhcCccceeeeEecHHHHHHHhCCCCCCCCcchHHHHHHHHHHHHHHcCCCccc-c------cc
Confidence 899999999999999999995 89999999999999862 5556778999999999999963 1 11
Q ss_pred CCCCChHH--HHHHHHHHHhcccccccc
Q 024709 79 YPIPTRAE--VADVSELVRQQADALMLS 104 (264)
Q Consensus 79 ~~~ptrae--~~dv~~~v~~g~d~~~ls 104 (264)
+.-...| ..+..++...|+|+-++-
T Consensus 187 -~d~~d~~g~~~e~~~a~~~Gf~GK~~I 213 (283)
T COG2301 187 -TDINDPEGFAREAAQAAALGFDGKTCI 213 (283)
T ss_pred -cccCCHHHHHHHHHHHHHcCCCccccc
Confidence 1111222 367888999999987763
No 38
>PLN02626 malate synthase
Probab=95.60 E-value=0.022 Score=56.67 Aligned_cols=98 Identities=17% Similarity=0.208 Sum_probs=67.7
Q ss_pred CcceEEEeccCHHHHhcHHHHHhh----cceeeecCCCc----ccCCC----------------CCChHHHHHHHHHHHH
Q 024709 5 VNIAVIAKIESIDSLKNLNEIILA----SDGAMVARGDL----GAQVP----------------LEQVPSIQEKIVQLCR 60 (264)
Q Consensus 5 ~~~~iiakIE~~~~~~n~~eI~~~----~Dgi~i~rgdL----~~~~~----------------~~~v~~~qk~ii~~~~ 60 (264)
..+++.+.|||..|+-|++||+.. +-|+..||-|+ .-.++ .+-...+.+.++..|+
T Consensus 245 GTIK~~vLIET~~A~f~meEIl~elr~r~agLn~GrwDyifS~ik~l~~~~~~vlpDr~~vtM~~~f~rAY~~llV~ach 324 (551)
T PLN02626 245 GSIRATVLIETLPAVFQMEEILYELRDHSAGLNCGRWDYIFSFVKTFRAHPDRLLPDRVQVGMTQHFMKSYVDLLIKTCH 324 (551)
T ss_pred CceEEEEEeccHHHHHHHHHHHHHhhhheeeeecChHHHHhHHHHHhccCCCCCCCCccccchhhHHHHHHHHHHHHHHH
Confidence 568999999999999999999976 78999999999 22222 1222335569999999
Q ss_pred HhCCCEEEEhhhhhhh--hhCCCCChHH----HHHHHHHHHhcccccccc
Q 024709 61 QLNKPVIVASQLLESM--IEYPIPTRAE----VADVSELVRQQADALMLS 104 (264)
Q Consensus 61 ~~gkpv~~atq~leSM--~~~~~ptrae----~~dv~~~v~~g~d~~~ls 104 (264)
++|...|- + |---+ ...|.++... ..|-.....+|+|+-+.-
T Consensus 325 ~rG~~AIg-G-M~a~iP~kdd~~~n~~al~~vr~dk~re~~~GfDG~wVi 372 (551)
T PLN02626 325 KRGVHAMG-G-MAAQIPIKDDPAANEAALALVRKDKLREVRAGHDGTWAA 372 (551)
T ss_pred hcCCcccc-c-ccccccCCCChhhhHHHHHHHHHHHHHHHhcCCCceeec
Confidence 99999663 1 11111 0112222111 257778999999998885
No 39
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=94.19 E-value=0.042 Score=54.96 Aligned_cols=89 Identities=17% Similarity=0.103 Sum_probs=72.9
Q ss_pred CcceEEEeccCHHHHhcHHHHHhhcceeeecCCCcccC----------------CCCCChHHHHHHHHHHHHHhCCCEEE
Q 024709 5 VNIAVIAKIESIDSLKNLNEIILASDGAMVARGDLGAQ----------------VPLEQVPSIQEKIVQLCRQLNKPVIV 68 (264)
Q Consensus 5 ~~~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~----------------~~~~~v~~~qk~ii~~~~~~gkpv~~ 68 (264)
+++.+=.|||.|.|.-..|.+++.+|-+=||-.||.-= --.|-|-...+++++.++++||||++
T Consensus 423 ~~i~lGiMIEvPsAa~~a~~lakevDFfSIGTNDLtQYtLA~DR~n~~vs~ly~pl~PAVLrlI~~vi~~ah~~gkwvgm 502 (574)
T COG1080 423 EKIELGIMIEVPSAALIADQLAKEVDFFSIGTNDLTQYTLAVDRGNAKVSHLYDPLHPAVLRLIKQVIDAAHRHGKWVGM 502 (574)
T ss_pred cccceeEEEehhHHHHHHHHHHHhCCEeeecccHHHHHHHHHhcCChhhhhhcCCCCHHHHHHHHHHHHHHHHcCCeeee
Confidence 46788899999999999999999999999999998521 11278889999999999999999999
Q ss_pred EhhhhhhhhhCCCCChHHHHHHHHHHHhcccccccc
Q 024709 69 ASQLLESMIEYPIPTRAEVADVSELVRQQADALMLS 104 (264)
Q Consensus 69 atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls 104 (264)
|..|= ..|.-. --.+..|.|=+-.|
T Consensus 503 CGElA------gD~~a~-----plLlGlGldElSms 527 (574)
T COG1080 503 CGELA------GDPAAT-----PLLLGLGLDELSMS 527 (574)
T ss_pred chhhc------cChhhH-----HHHHhcCcchhccC
Confidence 88654 455444 45777888887766
No 40
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.96 E-value=0.28 Score=46.88 Aligned_cols=85 Identities=21% Similarity=0.236 Sum_probs=52.7
Q ss_pred cceEEE-eccCHHHHhcHHHHHhhcceeeecCCCcccCCCC--C--ChHHH--HHHHHHHHHHh-------CCCEEEEhh
Q 024709 6 NIAVIA-KIESIDSLKNLNEIILASDGAMVARGDLGAQVPL--E--QVPSI--QEKIVQLCRQL-------NKPVIVASQ 71 (264)
Q Consensus 6 ~~~iia-kIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~--~--~v~~~--qk~ii~~~~~~-------gkpv~~atq 71 (264)
++.||+ .+-|.+....+.+ .=+|+||+|||-=+..... . .+|.+ ..+..+.++++ +.|+|.+.-
T Consensus 187 ~ipVIaG~V~t~e~A~~l~~--aGAD~V~VG~G~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGG 264 (368)
T PRK08649 187 DVPVIVGGCVTYTTALHLMR--TGAAGVLVGIGPGAACTSRGVLGIGVPMATAIADVAAARRDYLDETGGRYVHVIADGG 264 (368)
T ss_pred CCCEEEeCCCCHHHHHHHHH--cCCCEEEECCCCCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeEEEeCC
Confidence 467777 8888877666554 2399999999862222111 0 12211 12222222332 689998664
Q ss_pred hhhhhhhCCCCChHHHHHHHHHHHhcccccccc
Q 024709 72 LLESMIEYPIPTRAEVADVSELVRQQADALMLS 104 (264)
Q Consensus 72 ~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls 104 (264)
+-. -.|++.|+..|+|+||+.
T Consensus 265 I~~------------~~diakAlalGAd~Vm~G 285 (368)
T PRK08649 265 IGT------------SGDIAKAIACGADAVMLG 285 (368)
T ss_pred CCC------------HHHHHHHHHcCCCeeccc
Confidence 332 268999999999999995
No 41
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=92.51 E-value=0.15 Score=51.29 Aligned_cols=100 Identities=19% Similarity=0.177 Sum_probs=80.3
Q ss_pred ceEEEeccCHHHHhcHHHHHhhcceeeecCCCccc-----CCCC-----------CChHHHHHHHHHHHHHhCCCEEEEh
Q 024709 7 IAVIAKIESIDSLKNLNEIILASDGAMVARGDLGA-----QVPL-----------EQVPSIQEKIVQLCRQLNKPVIVAS 70 (264)
Q Consensus 7 ~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~-----~~~~-----------~~v~~~qk~ii~~~~~~gkpv~~at 70 (264)
..+=+|+|-|.-+-.+|++.+.+|-|=||..||.- +=+- +-+-.+-|+|.+.|.++|+||-+|.
T Consensus 598 ~~iG~MlEvPsll~~L~~L~~~vDFvSVGtNDL~QyllAvDR~N~RVad~yD~L~pa~LraLk~I~~a~~~~~~pVtlCG 677 (756)
T COG3605 598 PRIGAMLEVPSLLFQLDELAKRVDFVSVGTNDLTQYLLAVDRNNTRVADRYDSLHPAFLRALKQIVRAAERHGTPVTLCG 677 (756)
T ss_pred CCcceeeehhHHHHhHHHHHhhCCEEEecchHHHHHHHHHhcCCchhhhhhcccCHHHHHHHHHHHHHHHhcCCCeeehh
Confidence 45678999999999999999999999999999852 2221 5667788999999999999999998
Q ss_pred hhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHH
Q 024709 71 QLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSV 123 (264)
Q Consensus 71 q~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i 123 (264)
+|- .+|--| .--+..|+|.+-.+ -|++|+ ||+|-+-
T Consensus 678 EMA------g~Pl~A-----~~LigLGfrslSMn-~~~v~~-----VK~ml~~ 713 (756)
T COG3605 678 EMA------GDPLSA-----MALIGLGFRSLSMN-PRSVGP-----VKYLLRH 713 (756)
T ss_pred hhc------CChHHH-----HHHHhcCcCccccC-cccccc-----HHHHHHh
Confidence 775 577666 56788999998877 466664 5665543
No 42
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=92.21 E-value=0.26 Score=51.21 Aligned_cols=89 Identities=20% Similarity=0.065 Sum_probs=76.0
Q ss_pred ceEEEeccCHHHHhcHHHHHhhcceeeecCCCccc------------CCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhh
Q 024709 7 IAVIAKIESIDSLKNLNEIILASDGAMVARGDLGA------------QVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLE 74 (264)
Q Consensus 7 ~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~------------~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~le 74 (264)
.++..|||.+.++-..|||++..|+.=+|.+||.. +...+.|-...+..+..|+..|+.+++++|.-+
T Consensus 625 ~~~~~m~e~P~~~~~~~e~~~~~d~~S~gtndltq~tlg~~rd~~~~~~~~~~v~~li~~a~~~~~~~~~~~~icG~~~~ 704 (740)
T COG0574 625 YKVGQMIELPSAALLADEIAEYFDGFSIGSNDLTQLTLGLDRDSELFDERDPAVLKLIIIAIKAADSGGLLVGICGQAPS 704 (740)
T ss_pred EEEEEEeecchHHhhhHhHHhhcccceecccccccceeeeeccccccccccccHHHHHHHHHhcccccCcEEEEeccCCC
Confidence 78899999999999999999999999999999963 223478999999999999999999999998553
Q ss_pred hhhhCCCCChHHHHHHHHHHHhcccccccccc
Q 024709 75 SMIEYPIPTRAEVADVSELVRQQADALMLSGE 106 (264)
Q Consensus 75 SM~~~~~ptrae~~dv~~~v~~g~d~~~ls~e 106 (264)
.|.-| .-++..|.|+|.++.+
T Consensus 705 ------~p~~a-----~~~~e~Gi~~Vs~np~ 725 (740)
T COG0574 705 ------DPHGA-----IFLVELGIDSVSLNPD 725 (740)
T ss_pred ------CcHHH-----HHHHHcCCCeEecCch
Confidence 36555 4688999999997733
No 43
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=91.94 E-value=0.28 Score=51.83 Aligned_cols=89 Identities=17% Similarity=0.047 Sum_probs=71.5
Q ss_pred cceEEEeccCHHHHhcHHHHHhhcceeeecCCCcccC------------C------------C-----CCChHHHHHHHH
Q 024709 6 NIAVIAKIESIDSLKNLNEIILASDGAMVARGDLGAQ------------V------------P-----LEQVPSIQEKIV 56 (264)
Q Consensus 6 ~~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~------------~------------~-----~~~v~~~qk~ii 56 (264)
++.+=+|||+|.|.-..|+|++.+|.+=||-.||.-- + | .+-|....++++
T Consensus 732 ~~~iG~MiE~P~aal~ad~la~~~DFfSiGTNDLtQ~tlg~dR~~~~~~~~~y~~~~i~~~~P~~~ld~paV~~li~~~i 811 (856)
T TIGR01828 732 PYEIGTMIEIPRAALTADKIAEEADFFSFGTNDLTQMTFGFSRDDAGKFLPKYLEKGILEKDPFESLDQTGVGQLMRMAV 811 (856)
T ss_pred CCeEEEEEehHHHHHHHHHHHHhCCEEEECccHHHHHHhccCccchhhhHHHHHhcCcccCCcccccCcHHHHHHHHHHH
Confidence 3678899999999999999999999999998887521 1 1 134778889999
Q ss_pred HHHHH--hCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccc
Q 024709 57 QLCRQ--LNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSG 105 (264)
Q Consensus 57 ~~~~~--~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~ 105 (264)
++|++ .|+||+++.+|- ..|.-. .-.+..|.|.+..|.
T Consensus 812 ~~a~~~~~~~~vgvCGE~a------~dp~~i-----~~l~~~Gi~~~S~sp 851 (856)
T TIGR01828 812 EKGRQTRPNLKVGICGEHG------GDPSSI-----EFCHKIGLNYVSCSP 851 (856)
T ss_pred HHHhhcCCCCEEEeCCCCc------CCHHHH-----HHHHHCCCCEEEECh
Confidence 99999 999999998753 456555 467778999887763
No 44
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=91.10 E-value=7.3 Score=32.37 Aligned_cols=161 Identities=18% Similarity=0.072 Sum_probs=77.3
Q ss_pred CHHHHhcH-HHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHH
Q 024709 15 SIDSLKNL-NEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSE 92 (264)
Q Consensus 15 ~~~~~~n~-~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~ 92 (264)
+.+.++++ +..++. .|||++.. ...+.+.+.+.....|+++.+--. ....+++.-+..+..
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g-------------~~i~~~~~~~~~~~~~v~~~v~~~----~~~~~~~~~~~~a~~ 73 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP-------------GYVRLAADALAGSDVPVIVVVGFP----TGLTTTEVKVAEVEE 73 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH-------------HHHHHHHHHhCCCCCeEEEEecCC----CCCCcHHHHHHHHHH
Confidence 55555554 333333 89999974 222333333222136766643110 000124555677788
Q ss_pred HHHhccccccccccccCCCC--hHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcCC
Q 024709 93 LVRQQADALMLSGESAMGQF--PDKALAVLRSVSLRIEKWCREGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLKA 170 (264)
Q Consensus 93 ~v~~g~d~~~ls~eta~G~y--P~eav~~m~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~A 170 (264)
+...|+|++++..-.....- +.+.++..++++.+++.-.. -..|. .+.. .. ..+.+. ..++++.+.++
T Consensus 74 a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~p-v~iy~---~p~~----~~-~~~~~~-~~~~~~~~~g~ 143 (201)
T cd00945 74 AIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLP-LKVIL---ETRG----LK-TADEIA-KAARIAAEAGA 143 (201)
T ss_pred HHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCce-EEEEE---ECCC----CC-CHHHHH-HHHHHHHHhCC
Confidence 89999999998532211100 35556667777665411000 00011 0110 00 123333 33556677888
Q ss_pred cEEEEEcC------CchHHHHHh-hcCCCCcEEEEcCCh
Q 024709 171 SALFVYTK------TGQMASLLS-RSRPDCPIFAFAPMS 202 (264)
Q Consensus 171 ~aIVv~T~------sG~tA~~iS-r~RP~~PIiAvT~~~ 202 (264)
++|=..+. +-...+.+. .+.++.|+++.....
T Consensus 144 ~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~ 182 (201)
T cd00945 144 DFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAGGIK 182 (201)
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEECCCC
Confidence 86654443 112223332 333367888887654
No 45
>PRK08227 autoinducer 2 aldolase; Validated
Probab=91.08 E-value=3.6 Score=37.70 Aligned_cols=105 Identities=14% Similarity=0.109 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHhccccccccccccCC-CChHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCCCCCCCchHHHHHHHH
Q 024709 84 RAEVADVSELVRQQADALMLSGESAMG-QFPDKALAVLRSVSLRIEKWCREGKQHATFEPPPISSSVSAGIPGEICNGAA 162 (264)
Q Consensus 84 rae~~dv~~~v~~g~d~~~ls~eta~G-~yP~eav~~m~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv 162 (264)
..-+++|-.|+..|+|+|..+- ..| .+=-+.++.+.+++.++++|=.--- . +.+. ....+ +-.+ +...|+
T Consensus 94 ~~l~~sVeeAvrlGAdAV~~~v--~~Gs~~E~~~l~~l~~v~~ea~~~G~Pll--a--~~pr-G~~~~-~~~~-~ia~aa 164 (264)
T PRK08227 94 EAVAVDMEDAVRLNACAVAAQV--FIGSEYEHQSIKNIIQLVDAGLRYGMPVM--A--VTAV-GKDMV-RDAR-YFSLAT 164 (264)
T ss_pred ccceecHHHHHHCCCCEEEEEE--ecCCHHHHHHHHHHHHHHHHHHHhCCcEE--E--EecC-CCCcC-chHH-HHHHHH
Confidence 4446889999999999998753 233 3335677778888888888621100 0 0111 00111 2234 666678
Q ss_pred HHHHhcCCcEEEEEcCCchHHHHHhhcCCCCcEEEEc
Q 024709 163 KIANKLKASALFVYTKTGQMASLLSRSRPDCPIFAFA 199 (264)
Q Consensus 163 ~lA~~l~A~aIVv~T~sG~tA~~iSr~RP~~PIiAvT 199 (264)
.+|.+++|+ ||=..-+|.+-..+-.--| +||+.--
T Consensus 165 RiaaELGAD-iVK~~y~~~~f~~vv~a~~-vPVviaG 199 (264)
T PRK08227 165 RIAAEMGAQ-IIKTYYVEEGFERITAGCP-VPIVIAG 199 (264)
T ss_pred HHHHHHcCC-EEecCCCHHHHHHHHHcCC-CcEEEeC
Confidence 899999999 4444445643333333333 6777543
No 46
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=90.59 E-value=0.89 Score=38.47 Aligned_cols=48 Identities=17% Similarity=0.063 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHhhcCCC-CcEEEEcCC
Q 024709 154 PGEICNGAAKIANKLKASALFVYTKTGQMASLLSRSRPD-CPIFAFAPM 201 (264)
Q Consensus 154 ~~aIA~aAv~lA~~l~A~aIVv~T~sG~tA~~iSr~RP~-~PIiAvT~~ 201 (264)
++..-..|++-|.+++.+-|+|.+.||+||+.++.+-+. ..++++|+.
T Consensus 12 T~~tle~a~erA~elgik~~vVAS~tG~tA~k~lemveg~lkvVvVthh 60 (186)
T COG1751 12 TDETLEIAVERAKELGIKHIVVASSTGYTALKALEMVEGDLKVVVVTHH 60 (186)
T ss_pred hHHHHHHHHHHHHhcCcceEEEEecccHHHHHHHHhcccCceEEEEEee
Confidence 577888899999999999999999999999999998887 799999974
No 47
>PRK06852 aldolase; Validated
Probab=89.94 E-value=3.1 Score=38.91 Aligned_cols=173 Identities=14% Similarity=0.089 Sum_probs=95.7
Q ss_pred cCHHHHhcHHHHHhhcceeeecCCCcccCCCC------------CChHHH--------------HHHHHHHHHH--hCCC
Q 024709 14 ESIDSLKNLNEIILASDGAMVARGDLGAQVPL------------EQVPSI--------------QEKIVQLCRQ--LNKP 65 (264)
Q Consensus 14 E~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~------------~~v~~~--------------qk~ii~~~~~--~gkp 65 (264)
|+++=+.|+.++..-+.=.||=+.|=|++.|. ++.... |+-+++++.. .++|
T Consensus 15 ~~~~~~~~~~~~~~~sGr~~ivp~DHG~~~Gp~~~~~~~~~~gl~dp~~~i~~~~~~g~dav~~~~G~l~~~~~~~~~~~ 94 (304)
T PRK06852 15 MREEYIENYLEITKGTGRLMLFAGDQKIEHLNDDFYGEGIAKDDADPEHLFRIASKAKIGVFATQLGLIARYGMDYPDVP 94 (304)
T ss_pred cChhHHHHHHHhhCCCCCEEEEeccCCcccCCcccccccCCcccCCHHHHHHHHHhcCCCEEEeCHHHHHhhccccCCCc
Confidence 44666788888888777777777888877754 122222 2445555432 3566
Q ss_pred EEEEhhhhhhhhhCC----CCChHHHHHHHHHHHhc------cccccccccccCC-CChHHHHHHHHHHHHHHHhhhhcc
Q 024709 66 VIVASQLLESMIEYP----IPTRAEVADVSELVRQQ------ADALMLSGESAMG-QFPDKALAVLRSVSLRIEKWCREG 134 (264)
Q Consensus 66 v~~atq~leSM~~~~----~ptrae~~dv~~~v~~g------~d~~~ls~eta~G-~yP~eav~~m~~i~~~~E~~~~~~ 134 (264)
.|+--. .|-...+ .|...-+++|-.|+..| +|+|..+- ..| .+=-+.++.+.+++.++++|=.-.
T Consensus 95 lIlkl~--~~t~l~~~~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v--~~Gs~~E~~ml~~l~~v~~ea~~~GlPl 170 (304)
T PRK06852 95 YLVKLN--SKTNLVKTSQRDPLSRQLLDVEQVVEFKENSGLNILGVGYTI--YLGSEYESEMLSEAAQIIYEAHKHGLIA 170 (304)
T ss_pred EEEEEC--CCCCcCCcccCCccccceecHHHHHhcCCccCCCceEEEEEE--ecCCHHHHHHHHHHHHHHHHHHHhCCcE
Confidence 665321 1111122 45554468899999999 78887752 233 333567777888888888862100
Q ss_pred --cccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcCCcEEEEEcCC-----c--hHHHHHhhcCCCCcEEE
Q 024709 135 --KQHATFEPPPISSSVSAGIPGEICNGAAKIANKLKASALFVYTKT-----G--QMASLLSRSRPDCPIFA 197 (264)
Q Consensus 135 --~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~A~aIVv~T~s-----G--~tA~~iSr~RP~~PIiA 197 (264)
..|-+ .+... ...-.+.++ .++++|.+++|+.|=+. -+ | .+-+.+-..-.++||+.
T Consensus 171 l~~~ypr--G~~i~---~~~~~~~ia-~aaRiaaELGADIVKv~-y~~~~~~g~~e~f~~vv~~~g~vpVvi 235 (304)
T PRK06852 171 VLWIYPR--GKAVK---DEKDPHLIA-GAAGVAACLGADFVKVN-YPKKEGANPAELFKEAVLAAGRTKVVC 235 (304)
T ss_pred EEEeecc--CcccC---CCccHHHHH-HHHHHHHHHcCCEEEec-CCCcCCCCCHHHHHHHHHhCCCCcEEE
Confidence 01110 11111 111234454 45699999999954333 22 3 34444544442366444
No 48
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=88.69 E-value=2.6 Score=40.05 Aligned_cols=134 Identities=13% Similarity=0.062 Sum_probs=72.8
Q ss_pred HHhcHHHHHhh-----cceeeecCCCcccCCCCCChHHHHHHHHHHH-HH--hCCCEEEEhhhhhhhhhCCCCChHHHHH
Q 024709 18 SLKNLNEIILA-----SDGAMVARGDLGAQVPLEQVPSIQEKIVQLC-RQ--LNKPVIVASQLLESMIEYPIPTRAEVAD 89 (264)
Q Consensus 18 ~~~n~~eI~~~-----~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~-~~--~gkpv~~atq~leSM~~~~~ptrae~~d 89 (264)
+++|.+.+++. +|+++..+|=| +++ +. ..+|.|+--.-=.|+.....+...-.++
T Consensus 89 gl~dp~~~i~~a~~~g~dAv~~~~G~l-----------------~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~s 151 (348)
T PRK09250 89 LYFDPENIVKLAIEAGCNAVASTLGVL-----------------EAVARKYAHKIPFILKLNHNELLSYPNTYDQALTAS 151 (348)
T ss_pred cccCHHHHHHHHHhcCCCEEEeCHHHH-----------------HhccccccCCCCEEEEeCCCCCCCCCCCCcccceec
Confidence 66676665554 78888865543 332 22 2478776422111111111233444588
Q ss_pred HHHHHHhccccccccccccCC-CChHHHHHHHHHHHHHHHhhhhcc--cccccCCCCCCCCCCC-CCchHHHHHHHHHHH
Q 024709 90 VSELVRQQADALMLSGESAMG-QFPDKALAVLRSVSLRIEKWCREG--KQHATFEPPPISSSVS-AGIPGEICNGAAKIA 165 (264)
Q Consensus 90 v~~~v~~g~d~~~ls~eta~G-~yP~eav~~m~~i~~~~E~~~~~~--~~~~~~~~~~~~~~~~-~~~~~aIA~aAv~lA 165 (264)
|-.|+..|+|+|..+- ..| .+=-+.++.+.+++.++++|=.-. ..|-+ .+.+..... .+-.+ +...|+.+|
T Consensus 152 VedAlrLGAdAV~~tv--y~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpR--G~~i~~~~d~~~~~d-~Ia~AaRia 226 (348)
T PRK09250 152 VEDALRLGAVAVGATI--YFGSEESRRQIEEISEAFEEAHELGLATVLWSYLR--NSAFKKDGDYHTAAD-LTGQANHLA 226 (348)
T ss_pred HHHHHHCCCCEEEEEE--ecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEeccc--CcccCCcccccccHH-HHHHHHHHH
Confidence 9999999999998752 233 233567777888888888752100 01110 111111100 11234 455567899
Q ss_pred HhcCCcEE
Q 024709 166 NKLKASAL 173 (264)
Q Consensus 166 ~~l~A~aI 173 (264)
..++|+.|
T Consensus 227 aELGADIV 234 (348)
T PRK09250 227 ATIGADII 234 (348)
T ss_pred HHHcCCEE
Confidence 99999944
No 49
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=87.49 E-value=9.3 Score=35.04 Aligned_cols=164 Identities=20% Similarity=0.205 Sum_probs=87.2
Q ss_pred HhcHHHHHhh-cceeeecCCCcccCCC-C----CChHHHHHHHH--------------HHHH---HhCCCEEEEhhhhhh
Q 024709 19 LKNLNEIILA-SDGAMVARGDLGAQVP-L----EQVPSIQEKIV--------------QLCR---QLNKPVIVASQLLES 75 (264)
Q Consensus 19 ~~n~~eI~~~-~Dgi~i~rgdL~~~~~-~----~~v~~~qk~ii--------------~~~~---~~gkpv~~atq~leS 75 (264)
..|++.|..- ..-.+|-+.|=|++.+ + ++...+.+.+. +.-. .+.+|.++ .|.+
T Consensus 10 ~~rl~rif~~~tG~~~i~a~DhGv~~g~p~~gl~d~e~~v~~v~~~g~dav~~~~G~~~~~~~~y~~dvpliv---kl~~ 86 (265)
T COG1830 10 LRRLARIFNRGTGRLLILAMDHGVEHGNPIEGLEDPENIVAKVAEAGADAVAMTPGIARSVHRGYAHDVPLIV---KLNG 86 (265)
T ss_pred HHHHHHHhcCCCCCEEEEecccccccCCCcccccCHHHHHHHHHhcCCCEEEecHhHHhhcCccccCCcCEEE---Eecc
Confidence 4566666666 6666777777777764 2 33333332222 2222 13467776 4555
Q ss_pred hhhCCCCC-hHH--HHHHHHHHHhccccccc----cccccCCCChHHHHHHHHHHHHHHHhhhhcc--cccccCCCCCCC
Q 024709 76 MIEYPIPT-RAE--VADVSELVRQQADALML----SGESAMGQFPDKALAVLRSVSLRIEKWCREG--KQHATFEPPPIS 146 (264)
Q Consensus 76 M~~~~~pt-rae--~~dv~~~v~~g~d~~~l----s~eta~G~yP~eav~~m~~i~~~~E~~~~~~--~~~~~~~~~~~~ 146 (264)
+.. ..|+ +-+ +..|-.++..|+|+|-. .+|+- -+.++.+.++...+.+|=.-. ..|- ..+...
T Consensus 87 ~t~-l~~~~~~~~~~~~ve~ai~lgadAV~~~Vy~Gse~e-----~~~i~~~~~v~~~a~~~Gmp~v~~~Yp--Rg~~~~ 158 (265)
T COG1830 87 STS-LSPDPNDQVLVATVEDAIRLGADAVGATVYVGSETE-----REMIENISQVVEDAHELGMPLVAWAYP--RGPAIK 158 (265)
T ss_pred ccc-cCCCcccceeeeeHHHHHhCCCcEEEEEEecCCcch-----HHHHHHHHHHHHHHHHcCCceEEEEec--cCCccc
Confidence 533 2222 333 36777899999999754 34433 577777777777777641100 0010 011110
Q ss_pred CCCCCCchHHHHHHHHHHHHhcCCcEEEEEcCCc--hHHHHHhhcCCCCcEEE
Q 024709 147 SSVSAGIPGEICNGAAKIANKLKASALFVYTKTG--QMASLLSRSRPDCPIFA 197 (264)
Q Consensus 147 ~~~~~~~~~aIA~aAv~lA~~l~A~aIVv~T~sG--~tA~~iSr~RP~~PIiA 197 (264)
.. .....+.+ ..|.+++..++|+ ||=---+| .+-+.+-++-| +||+.
T Consensus 159 ~~-~~~d~~~v-~~aaRlaaelGAD-IiK~~ytg~~e~F~~vv~~~~-vpVvi 207 (265)
T COG1830 159 DE-YHRDADLV-GYAARLAAELGAD-IIKTKYTGDPESFRRVVAACG-VPVVI 207 (265)
T ss_pred cc-ccccHHHH-HHHHHHHHHhcCC-eEeecCCCChHHHHHHHHhCC-CCEEE
Confidence 10 11223444 4556789999999 44333334 55666666666 66554
No 50
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=87.46 E-value=1.8 Score=41.48 Aligned_cols=85 Identities=20% Similarity=0.287 Sum_probs=49.0
Q ss_pred cceEEE-eccCHHHHhcHHHHHhhcceeeecCCCcccCCCC--CChH--HHHHHHHHHHHH----h---CCCEEEEhhhh
Q 024709 6 NIAVIA-KIESIDSLKNLNEIILASDGAMVARGDLGAQVPL--EQVP--SIQEKIVQLCRQ----L---NKPVIVASQLL 73 (264)
Q Consensus 6 ~~~iia-kIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~--~~v~--~~qk~ii~~~~~----~---gkpv~~atq~l 73 (264)
++.||+ .+-+.+....+-+ .=+|+||++||--...-.. ..+| .+...+.+.++. . ++|||.+..+-
T Consensus 188 ~IPVI~G~V~t~e~A~~~~~--aGaDgV~~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~ 265 (369)
T TIGR01304 188 DVPVIAGGVNDYTTALHLMR--TGAAGVIVGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIE 265 (369)
T ss_pred CCCEEEeCCCCHHHHHHHHH--cCCCEEEECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCC
Confidence 456776 6666655444433 2399999998653221100 1122 112222222222 2 38999866443
Q ss_pred hhhhhCCCCChHHHHHHHHHHHhcccccccc
Q 024709 74 ESMIEYPIPTRAEVADVSELVRQQADALMLS 104 (264)
Q Consensus 74 eSM~~~~~ptrae~~dv~~~v~~g~d~~~ls 104 (264)
. -.|++.|+..|+|+||+.
T Consensus 266 t------------g~di~kAlAlGAdaV~iG 284 (369)
T TIGR01304 266 T------------SGDLVKAIACGADAVVLG 284 (369)
T ss_pred C------------HHHHHHHHHcCCCEeeeH
Confidence 2 268999999999999996
No 51
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=86.47 E-value=2.1 Score=42.47 Aligned_cols=83 Identities=24% Similarity=0.376 Sum_probs=53.4
Q ss_pred ceEEE-eccCHHHHhcHHHHHhh-cceeeec--CCCcc-----cCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhh
Q 024709 7 IAVIA-KIESIDSLKNLNEIILA-SDGAMVA--RGDLG-----AQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMI 77 (264)
Q Consensus 7 ~~iia-kIE~~~~~~n~~eI~~~-~Dgi~i~--rgdL~-----~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~ 77 (264)
+.|++ -+-|.+... ..++. +|+|.+| +|--+ ...+.+.+ .+...+.+.|++.|.|+|....+.
T Consensus 283 ~~v~aG~V~t~~~a~---~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~-~ai~~~~~~~~~~~v~vIadGGi~---- 354 (495)
T PTZ00314 283 VDIIAGNVVTADQAK---NLIDAGADGLRIGMGSGSICITQEVCAVGRPQA-SAVYHVARYARERGVPCIADGGIK---- 354 (495)
T ss_pred ceEEECCcCCHHHHH---HHHHcCCCEEEECCcCCcccccchhccCCCChH-HHHHHHHHHHhhcCCeEEecCCCC----
Confidence 45656 444544433 44455 9999864 66322 12333332 355677788999999999744322
Q ss_pred hCCCCChHHHHHHHHHHHhccccccccc
Q 024709 78 EYPIPTRAEVADVSELVRQQADALMLSG 105 (264)
Q Consensus 78 ~~~~ptrae~~dv~~~v~~g~d~~~ls~ 105 (264)
+ -.|++.|+..|||+||+.+
T Consensus 355 -----~---~~di~kAla~GA~~Vm~G~ 374 (495)
T PTZ00314 355 -----N---SGDICKALALGADCVMLGS 374 (495)
T ss_pred -----C---HHHHHHHHHcCCCEEEECc
Confidence 2 2688999999999999973
No 52
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=85.17 E-value=4.3 Score=38.52 Aligned_cols=85 Identities=18% Similarity=0.105 Sum_probs=54.2
Q ss_pred cceEEEe-ccCHHHHhcHHHHHhhcceeeecCCCcccCCCC--CChH----HHHHHHHHHHHHhCCCEEEEhhhhhhhhh
Q 024709 6 NIAVIAK-IESIDSLKNLNEIILASDGAMVARGDLGAQVPL--EQVP----SIQEKIVQLCRQLNKPVIVASQLLESMIE 78 (264)
Q Consensus 6 ~~~iiak-IE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~--~~v~----~~qk~ii~~~~~~gkpv~~atq~leSM~~ 78 (264)
+..||+- |-|+++.+++-+ .=+|+|.|+=|-=+...+. .-+. .+..++.+.++..++|+|. .
T Consensus 150 ~~~viaGNV~T~e~a~~Li~--aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VIa---------D 218 (343)
T TIGR01305 150 EHTIMAGNVVTGEMVEELIL--SGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHIIS---------D 218 (343)
T ss_pred CCeEEEecccCHHHHHHHHH--cCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEEE---------c
Confidence 3566776 999988775533 2399999873332333332 2233 2334455555666888986 2
Q ss_pred CCCCChHHHHHHHHHHHhcccccccc
Q 024709 79 YPIPTRAEVADVSELVRQQADALMLS 104 (264)
Q Consensus 79 ~~~ptrae~~dv~~~v~~g~d~~~ls 104 (264)
.... --.|++.|+..|+|+||+.
T Consensus 219 GGIr---~~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 219 GGCT---CPGDVAKAFGAGADFVMLG 241 (343)
T ss_pred CCcC---chhHHHHHHHcCCCEEEEC
Confidence 2222 2379999999999999997
No 53
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=85.02 E-value=1.7 Score=46.20 Aligned_cols=88 Identities=18% Similarity=0.088 Sum_probs=71.2
Q ss_pred cceEEEeccCHHHHhcHHHHHhhcceeeecCCCcccC------------C------------CC-----CChHHHHHHHH
Q 024709 6 NIAVIAKIESIDSLKNLNEIILASDGAMVARGDLGAQ------------V------------PL-----EQVPSIQEKIV 56 (264)
Q Consensus 6 ~~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~------------~------------~~-----~~v~~~qk~ii 56 (264)
+..|=.|||+|.|.--.|+|++.+|.+=||-.||.-- + |. +-|-...+..+
T Consensus 738 ~~~vG~MIEvP~Aal~ad~iA~~adFfSiGTNDLTQ~t~g~dRdd~~~fl~~y~~~~i~~~dPf~~lD~~aV~~Li~~~v 817 (879)
T PRK09279 738 DYKVGTMIELPRAALTADEIAEEAEFFSFGTNDLTQTTFGFSRDDAGKFLPDYLEKGILEEDPFESLDQEGVGELVEIAV 817 (879)
T ss_pred CceEEEEEehHHHHHhHHHHHHhCCEEEEcccHHHHHHhccCccchhhhHHHHHhcCcccCCcchhcChHHHHHHHHHHH
Confidence 4678899999999999999999999999999888521 1 11 24777788999
Q ss_pred HHHHH--hCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhcccccccc
Q 024709 57 QLCRQ--LNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLS 104 (264)
Q Consensus 57 ~~~~~--~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls 104 (264)
++|++ .|+|++++.++- ..|.-. .-+...|.|.+-.|
T Consensus 818 ~~~r~~~~~~~vgICGE~g------gdp~~i-----~~l~~lGld~vS~s 856 (879)
T PRK09279 818 ERGRATRPDLKLGICGEHG------GDPASI-----EFCHKVGLDYVSCS 856 (879)
T ss_pred HHHHhcCCCCEEEECCCCc------cCHHHH-----HHHHHCCCCEEEEC
Confidence 99998 799999988643 466555 56788899999888
No 54
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=84.08 E-value=3.7 Score=39.13 Aligned_cols=81 Identities=20% Similarity=0.224 Sum_probs=53.8
Q ss_pred eEEEeccCHHHHhcHHHHHhh-cceeeecCCCcccCC-------CCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhC
Q 024709 8 AVIAKIESIDSLKNLNEIILA-SDGAMVARGDLGAQV-------PLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEY 79 (264)
Q Consensus 8 ~iiakIE~~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~-------~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~ 79 (264)
.|.--+-|.++.++| +.. +|+|-||=|-=++-. |.+ -..+..+..+.|+++|+|+|-
T Consensus 152 viaGNV~T~e~a~~L---~~aGad~vkVGiGpGsiCtTr~v~GvG~P-Q~tAv~~~a~~a~~~~v~iIA----------- 216 (352)
T PF00478_consen 152 VIAGNVVTYEGAKDL---IDAGADAVKVGIGPGSICTTREVTGVGVP-QLTAVYECAEAARDYGVPIIA----------- 216 (352)
T ss_dssp EEEEEE-SHHHHHHH---HHTT-SEEEESSSSSTTBHHHHHHSBSCT-HHHHHHHHHHHHHCTTSEEEE-----------
T ss_pred EEecccCCHHHHHHH---HHcCCCEEEEeccCCcccccccccccCCc-HHHHHHHHHHHhhhccCceee-----------
Confidence 345578888888774 445 999999866332221 223 445566788888889999996
Q ss_pred CCCChHHHHHHHHHHHhcccccccc
Q 024709 80 PIPTRAEVADVSELVRQQADALMLS 104 (264)
Q Consensus 80 ~~ptrae~~dv~~~v~~g~d~~~ls 104 (264)
.-------|++.|+..|+|+||+.
T Consensus 217 -DGGi~~sGDi~KAla~GAd~VMlG 240 (352)
T PF00478_consen 217 -DGGIRTSGDIVKALAAGADAVMLG 240 (352)
T ss_dssp -ESS-SSHHHHHHHHHTT-SEEEES
T ss_pred -cCCcCcccceeeeeeecccceeec
Confidence 222223469999999999999995
No 55
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type. This family is the archaeal-type phosphoenolpyruvate carboxylase, although not every host species is archaeal. These sequences bear little resemblance to the bacterial/eukaryotic type. The members from Sulfolobus solfataricus and Methanothermobacter thermautotrophicus were verified experimentally, while the activity is known to be present in a number of other archaea.
Probab=83.23 E-value=1.6 Score=43.51 Aligned_cols=63 Identities=24% Similarity=0.293 Sum_probs=55.7
Q ss_pred cceEEEeccCHHHHhcHHHHHhh-cc-------eeeecCCCcccCCCC----CChHHHHHHHHHHHHHhCCCEEE
Q 024709 6 NIAVIAKIESIDSLKNLNEIILA-SD-------GAMVARGDLGAQVPL----EQVPSIQEKIVQLCRQLNKPVIV 68 (264)
Q Consensus 6 ~~~iiakIE~~~~~~n~~eI~~~-~D-------gi~i~rgdL~~~~~~----~~v~~~qk~ii~~~~~~gkpv~~ 68 (264)
.+.||.=+||.+++.|.++|+.. .. -||+||.|=+.+.|. -.+..+|.++.+.|+++|.++..
T Consensus 173 ~i~VIPLFEt~~dL~~a~~Il~~~l~~~~~~~qrVmLGySDSAkd~G~laA~~al~~Aq~~L~e~~ee~gV~l~p 247 (506)
T TIGR02751 173 KIRVIPLIEDKDSLLNADEIVKEYAEAHEPEYMRVFLARSDPALNYGMIAAVLSNKYALSRLYELSEETGISIYP 247 (506)
T ss_pred CcCeecCcCCHHHHHhHHHHHHHHHHhcCcCceEEEEecccccchhhHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 56899999999999999999987 21 479999999999997 57888999999999999998865
No 56
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=82.59 E-value=5.2 Score=37.48 Aligned_cols=82 Identities=27% Similarity=0.429 Sum_probs=50.9
Q ss_pred ceEEE-eccCHHHHhcHHHHHhh-cceeeec--CCCcccC-----CCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhh
Q 024709 7 IAVIA-KIESIDSLKNLNEIILA-SDGAMVA--RGDLGAQ-----VPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMI 77 (264)
Q Consensus 7 ~~iia-kIE~~~~~~n~~eI~~~-~Dgi~i~--rgdL~~~-----~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~ 77 (264)
+.|++ .+.|.+...++ ++. +|+|.++ +|--... .+.+. ..+...+.+.|+..++|+|.+..+-
T Consensus 136 v~Vi~G~v~t~~~A~~l---~~aGaD~I~vg~g~G~~~~t~~~~g~g~p~-~~~i~~v~~~~~~~~vpVIA~GGI~---- 207 (325)
T cd00381 136 VDVIAGNVVTAEAARDL---IDAGADGVKVGIGPGSICTTRIVTGVGVPQ-ATAVADVAAAARDYGVPVIADGGIR---- 207 (325)
T ss_pred ceEEECCCCCHHHHHHH---HhcCCCEEEECCCCCcCcccceeCCCCCCH-HHHHHHHHHHHhhcCCcEEecCCCC----
Confidence 55654 66665554444 445 9999984 3321110 12222 2344567777888899999644322
Q ss_pred hCCCCChHHHHHHHHHHHhcccccccc
Q 024709 78 EYPIPTRAEVADVSELVRQQADALMLS 104 (264)
Q Consensus 78 ~~~~ptrae~~dv~~~v~~g~d~~~ls 104 (264)
.-.|++.++..|+|+||+.
T Consensus 208 --------~~~di~kAla~GA~~VmiG 226 (325)
T cd00381 208 --------TSGDIVKALAAGADAVMLG 226 (325)
T ss_pred --------CHHHHHHHHHcCCCEEEec
Confidence 2358899999999999995
No 57
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=81.92 E-value=35 Score=29.89 Aligned_cols=121 Identities=14% Similarity=0.218 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhh
Q 024709 51 IQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKW 130 (264)
Q Consensus 51 ~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~ 130 (264)
.-.-+...|+..|.|+.+- .|....-......-..|++.+...+. | -++.+...+++.+-..
T Consensus 61 ~g~alA~~a~~~g~~~~v~-----------~p~~~~~~~~~~~~~~Ga~v~~~~~~-----~-~~~~~~a~~~~~~~~~- 122 (244)
T cd00640 61 TGIALAAAAARLGLKCTIV-----------MPEGASPEKVAQMRALGAEVVLVPGD-----F-DDAIALAKELAEEDPG- 122 (244)
T ss_pred HHHHHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHCCCEEEEECCC-----H-HHHHHHHHHHHHhCCC-
Confidence 3346677899999999983 33333344455667789988776543 3 3455555444332111
Q ss_pred hhcccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcC---CcEEEEEcCCchHHHHHh----hcCCCCcEEEEcC
Q 024709 131 CREGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLK---ASALFVYTKTGQMASLLS----RSRPDCPIFAFAP 200 (264)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~---A~aIVv~T~sG~tA~~iS----r~RP~~PIiAvT~ 200 (264)
.++..+.. .....+.-...+.++.++++ .+.||+.+-+|.++--++ ..+|...|+++-+
T Consensus 123 --------~~~~~~~~---n~~~~~g~~~~~~Ei~~q~~~~~~d~ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~ 188 (244)
T cd00640 123 --------AYYVNQFD---NPANIAGQGTIGLEILEQLGGQKPDAVVVPVGGGGNIAGIARALKELLPNVKVIGVEP 188 (244)
T ss_pred --------CEecCCCC---CHHHHHHHHHHHHHHHHHcCCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEee
Confidence 11112210 11122334455567777776 489999999999877554 5668899998876
No 58
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=81.79 E-value=6.8 Score=37.23 Aligned_cols=81 Identities=23% Similarity=0.290 Sum_probs=58.0
Q ss_pred HHHhcHHHHHhh-cceeeecCCCcccCCCC--CChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHH--HHHHH
Q 024709 17 DSLKNLNEIILA-SDGAMVARGDLGAQVPL--EQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAE--VADVS 91 (264)
Q Consensus 17 ~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~--~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae--~~dv~ 91 (264)
..++.+...++. +|+|.+|=-+++.--.. -.... -++.++.|+++||-+.++...+ +.+...| ...+.
T Consensus 14 g~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~-l~e~i~~ah~~gkk~~V~~N~~------~~~~~~~~~~~~l~ 86 (347)
T COG0826 14 GNLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVED-LAEAVELAHSAGKKVYVAVNTL------LHNDELETLERYLD 86 (347)
T ss_pred CCHHHHHHHHHcCCCEEEeCCcccccccccccCCHHH-HHHHHHHHHHcCCeEEEEeccc------cccchhhHHHHHHH
Confidence 345556666666 89999995577776665 22222 5788999999999999987655 2333333 35677
Q ss_pred HHHHhcccccccc
Q 024709 92 ELVRQQADALMLS 104 (264)
Q Consensus 92 ~~v~~g~d~~~ls 104 (264)
..+..|+|+|.++
T Consensus 87 ~l~e~GvDaviv~ 99 (347)
T COG0826 87 RLVELGVDAVIVA 99 (347)
T ss_pred HHHHcCCCEEEEc
Confidence 7889999999998
No 59
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=81.43 E-value=11 Score=35.23 Aligned_cols=108 Identities=18% Similarity=0.272 Sum_probs=63.7
Q ss_pred cceEEEeccCHHHHhcHHHHHhh-----cceeeecCCCcccCCCC--------------CChHHHHHHHHHHHHHhCCCE
Q 024709 6 NIAVIAKIESIDSLKNLNEIILA-----SDGAMVARGDLGAQVPL--------------EQVPSIQEKIVQLCRQLNKPV 66 (264)
Q Consensus 6 ~~~iiakIE~~~~~~n~~eI~~~-----~Dgi~i~rgdL~~~~~~--------------~~v~~~qk~ii~~~~~~gkpv 66 (264)
++.|++|+ ++ .+.++.++++. +|||.+.-.=.+..+.. .-.+...+.+-+..+..+.|+
T Consensus 165 ~iPV~vKl-~p-~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ipI 242 (334)
T PRK07565 165 SIPVAVKL-SP-YFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGADL 242 (334)
T ss_pred CCcEEEEe-CC-CchhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCCE
Confidence 57789996 33 33345555443 89886632212221111 223445555544445567888
Q ss_pred EEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhh
Q 024709 67 IVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCR 132 (264)
Q Consensus 67 ~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~ 132 (264)
|-...+- -..|+..++..|||+|+++..--... | ..+.+|+++-+.|+.
T Consensus 243 ig~GGI~------------s~~Da~e~l~aGA~~V~v~t~~~~~g-~----~~~~~i~~~L~~~l~ 291 (334)
T PRK07565 243 AATTGVH------------DAEDVIKMLLAGADVVMIASALLRHG-P----DYIGTILRGLEDWME 291 (334)
T ss_pred EEECCCC------------CHHHHHHHHHcCCCceeeehHHhhhC-c----HHHHHHHHHHHHHHH
Confidence 8644322 23578899999999999985544411 3 567777778777665
No 60
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=81.00 E-value=7.9 Score=33.97 Aligned_cols=82 Identities=10% Similarity=0.023 Sum_probs=51.5
Q ss_pred HhcHHHHHhh-ccee--eecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHH-HHHHH
Q 024709 19 LKNLNEIILA-SDGA--MVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVAD-VSELV 94 (264)
Q Consensus 19 ~~n~~eI~~~-~Dgi--~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~d-v~~~v 94 (264)
+..+++.++. +|++ .+-.|++. ..++...-+++.+.|+++|.|+++=...-.-...+ .-+..++.. ...+.
T Consensus 79 ~~~v~~a~~~Ga~~v~~~~~~~~~~----~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~-~~~~~~i~~~~~~a~ 153 (235)
T cd00958 79 VASVEDAVRLGADAVGVTVYVGSEE----EREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKN-EKDPDLIAYAARIGA 153 (235)
T ss_pred hcCHHHHHHCCCCEEEEEEecCCch----HHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccC-ccCHHHHHHHHHHHH
Confidence 4457777777 8888 66656552 46677788899999999999999822110000000 012234443 44577
Q ss_pred Hhccccccccc
Q 024709 95 RQQADALMLSG 105 (264)
Q Consensus 95 ~~g~d~~~ls~ 105 (264)
..|+|.+-.+.
T Consensus 154 ~~GaD~Ik~~~ 164 (235)
T cd00958 154 ELGADIVKTKY 164 (235)
T ss_pred HHCCCEEEecC
Confidence 89999999963
No 61
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=80.93 E-value=35 Score=32.54 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=53.7
Q ss_pred cceEEEeccCHHHHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChH
Q 024709 6 NIAVIAKIESIDSLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRA 85 (264)
Q Consensus 6 ~~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptra 85 (264)
.+.+++-+-+...++-+ .+++|.+-||-+++.- -.+++.+-+.||||++.|.| .+|-.
T Consensus 182 Gl~~~t~v~d~~~~~~l---~~~vd~lkI~s~~~~n-----------~~LL~~~a~~gkPVilk~G~--------~~t~~ 239 (360)
T PRK12595 182 GLAVISEIVNPADVEVA---LDYVDVIQIGARNMQN-----------FELLKAAGRVNKPVLLKRGL--------SATIE 239 (360)
T ss_pred CCCEEEeeCCHHHHHHH---HHhCCeEEECcccccC-----------HHHHHHHHccCCcEEEeCCC--------CCCHH
Confidence 35566766665555444 4459999999887732 36778888899999996643 26777
Q ss_pred HHHHHHHHHH-hcccccccc
Q 024709 86 EVADVSELVR-QQADALMLS 104 (264)
Q Consensus 86 e~~dv~~~v~-~g~d~~~ls 104 (264)
|+...++.+. .|.+=++|.
T Consensus 240 e~~~Ave~i~~~Gn~~i~L~ 259 (360)
T PRK12595 240 EFIYAAEYIMSQGNGQIILC 259 (360)
T ss_pred HHHHHHHHHHHCCCCCEEEE
Confidence 8877777665 577656665
No 62
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=80.86 E-value=30 Score=29.86 Aligned_cols=87 Identities=20% Similarity=0.190 Sum_probs=50.6
Q ss_pred CCChHHHHHHHHHHHhcccccccccccc---CCCChHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCCCCCCCchHHH
Q 024709 81 IPTRAEVADVSELVRQQADALMLSGESA---MGQFPDKALAVLRSVSLRIEKWCREGKQHATFEPPPISSSVSAGIPGEI 157 (264)
Q Consensus 81 ~ptrae~~dv~~~v~~g~d~~~ls~eta---~G~yP~eav~~m~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~aI 157 (264)
.++..-+..+..|+.+|+|.+-..--.. .|.| -+..+.+.+++..+... ..... + . .....+..
T Consensus 66 ~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~-~~~~~ei~~v~~~~~g~-----~lkvI----~-e--~~~l~~~~ 132 (203)
T cd00959 66 TTTEVKVAEAREAIADGADEIDMVINIGALKSGDY-EAVYEEIAAVVEACGGA-----PLKVI----L-E--TGLLTDEE 132 (203)
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCH-HHHHHHHHHHHHhcCCC-----eEEEE----E-e--cCCCCHHH
Confidence 4455567889999999999987754332 3443 44566666666554310 00000 0 0 00112345
Q ss_pred HHHHHHHHHhcCCcEEEEEcCCchH
Q 024709 158 CNGAAKIANKLKASALFVYTKTGQM 182 (264)
Q Consensus 158 A~aAv~lA~~l~A~aIVv~T~sG~t 182 (264)
-..++++|.+++|+ ++=|.||.+
T Consensus 133 i~~a~ria~e~GaD--~IKTsTG~~ 155 (203)
T cd00959 133 IIKACEIAIEAGAD--FIKTSTGFG 155 (203)
T ss_pred HHHHHHHHHHhCCC--EEEcCCCCC
Confidence 66678899999999 555667754
No 63
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=80.20 E-value=46 Score=30.24 Aligned_cols=76 Identities=13% Similarity=0.190 Sum_probs=54.9
Q ss_pred cceEEEeccCHHHHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCC-CCCh
Q 024709 6 NIAVIAKIESIDSLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYP-IPTR 84 (264)
Q Consensus 6 ~~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~-~ptr 84 (264)
.+.+++-+-+.+.++-+. +.+|.+-|+-+++. |-.+++++.+.||||++.| + .+|-
T Consensus 79 Gl~~~Tev~d~~~v~~~~---e~vdilqIgs~~~~-----------n~~LL~~va~tgkPVilk~---------G~~~t~ 135 (250)
T PRK13397 79 GLLSVSEIMSERQLEEAY---DYLDVIQVGARNMQ-----------NFEFLKTLSHIDKPILFKR---------GLMATI 135 (250)
T ss_pred CCCEEEeeCCHHHHHHHH---hcCCEEEECccccc-----------CHHHHHHHHccCCeEEEeC---------CCCCCH
Confidence 355666666665555554 46999999977763 2567888888999999954 4 6788
Q ss_pred HHHHHHHHHHH-hcccccccc
Q 024709 85 AEVADVSELVR-QQADALMLS 104 (264)
Q Consensus 85 ae~~dv~~~v~-~g~d~~~ls 104 (264)
.|+...+..+. .|..=++|.
T Consensus 136 ~e~~~A~e~i~~~Gn~~i~L~ 156 (250)
T PRK13397 136 EEYLGALSYLQDTGKSNIILC 156 (250)
T ss_pred HHHHHHHHHHHHcCCCeEEEE
Confidence 88887777766 577666766
No 64
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=79.96 E-value=4.4 Score=36.37 Aligned_cols=59 Identities=25% Similarity=0.433 Sum_probs=42.2
Q ss_pred cHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccc
Q 024709 21 NLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQAD 99 (264)
Q Consensus 21 n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d 99 (264)
.++.+++. .|+|||| |=++++ .+.-.++++++++...|++. .|... +.+..++|
T Consensus 24 ~~~~~~~~gtdai~vG-GS~~vt------~~~~~~~v~~ik~~~lPvil------------fp~~~------~~i~~~aD 78 (232)
T PRK04169 24 ALEAICESGTDAIIVG-GSDGVT------EENVDELVKAIKEYDLPVIL------------FPGNI------EGISPGAD 78 (232)
T ss_pred HHHHHHhcCCCEEEEc-CCCccc------hHHHHHHHHHHhcCCCCEEE------------eCCCc------cccCcCCC
Confidence 33667766 8999999 544444 24445677778888899997 56664 56778899
Q ss_pred ccccc
Q 024709 100 ALMLS 104 (264)
Q Consensus 100 ~~~ls 104 (264)
+++.-
T Consensus 79 a~l~~ 83 (232)
T PRK04169 79 AYLFP 83 (232)
T ss_pred EEEEE
Confidence 98764
No 65
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=79.19 E-value=9.5 Score=37.34 Aligned_cols=83 Identities=25% Similarity=0.378 Sum_probs=54.3
Q ss_pred cceEEE-eccCHHHHhcHHHHHhh-cceeeec--CCCcccC-----CCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhh
Q 024709 6 NIAVIA-KIESIDSLKNLNEIILA-SDGAMVA--RGDLGAQ-----VPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESM 76 (264)
Q Consensus 6 ~~~iia-kIE~~~~~~n~~eI~~~-~Dgi~i~--rgdL~~~-----~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM 76 (264)
++.|++ -+-|.+...++-+ . +|+|-+| ||--... .+.+. ..+...+.+.|++.+.|+|....+-
T Consensus 265 ~~~vi~G~v~t~~~a~~l~~---aGad~i~vg~g~G~~~~t~~~~~~g~p~-~~~i~~~~~~~~~~~vpviadGGi~--- 337 (450)
T TIGR01302 265 DLDIIAGNVATAEQAKALID---AGADGLRVGIGPGSICTTRIVAGVGVPQ-ITAVYDVAEYAAQSGIPVIADGGIR--- 337 (450)
T ss_pred CCCEEEEeCCCHHHHHHHHH---hCCCEEEECCCCCcCCccceecCCCccH-HHHHHHHHHHHhhcCCeEEEeCCCC---
Confidence 345555 5667666555443 4 8999865 5522221 23232 2556777888899999998744322
Q ss_pred hhCCCCChHHHHHHHHHHHhcccccccc
Q 024709 77 IEYPIPTRAEVADVSELVRQQADALMLS 104 (264)
Q Consensus 77 ~~~~~ptrae~~dv~~~v~~g~d~~~ls 104 (264)
+ -.|++.|+..|||+||+.
T Consensus 338 ------~---~~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 338 ------Y---SGDIVKALAAGADAVMLG 356 (450)
T ss_pred ------C---HHHHHHHHHcCCCEEEEC
Confidence 2 357899999999999996
No 66
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=78.95 E-value=36 Score=30.96 Aligned_cols=83 Identities=22% Similarity=0.215 Sum_probs=57.3
Q ss_pred cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhcccccccccccc
Q 024709 29 SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESA 108 (264)
Q Consensus 29 ~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta 108 (264)
+|.||.-=...|...|..+ +...+.+.+. .+.||++-. ..-|. +|++.++..|+|+|++.+=.+
T Consensus 145 ~~~vmPlg~pIGsg~Gi~~-~~~I~~I~e~---~~vpVI~eg---------GI~tp---eda~~AmelGAdgVlV~SAIt 208 (248)
T cd04728 145 CAAVMPLGSPIGSGQGLLN-PYNLRIIIER---ADVPVIVDA---------GIGTP---SDAAQAMELGADAVLLNTAIA 208 (248)
T ss_pred CCEeCCCCcCCCCCCCCCC-HHHHHHHHHh---CCCcEEEeC---------CCCCH---HHHHHHHHcCCCEEEEChHhc
Confidence 6777662233444455545 6666655554 478999832 22222 577999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHH
Q 024709 109 MGQFPDKALAVLRSVSLRI 127 (264)
Q Consensus 109 ~G~yP~eav~~m~~i~~~~ 127 (264)
.++.|..-.+.+..-+..-
T Consensus 209 ~a~dP~~ma~af~~Av~aG 227 (248)
T cd04728 209 KAKDPVAMARAFKLAVEAG 227 (248)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999998777777655443
No 67
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=78.88 E-value=11 Score=35.77 Aligned_cols=81 Identities=17% Similarity=0.140 Sum_probs=53.3
Q ss_pred eEEEeccCHHHHhcHHHHHhh-cceeeecCCCcccCCC-------CCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhC
Q 024709 8 AVIAKIESIDSLKNLNEIILA-SDGAMVARGDLGAQVP-------LEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEY 79 (264)
Q Consensus 8 ~iiakIE~~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~-------~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~ 79 (264)
.|.--+-|+++.++| +.. +|++-||=|-=++=+. .+ -..+..+..+.+++.|+|+|- .-
T Consensus 154 vIaGNV~T~e~a~~L---i~aGAD~vKVGIGpGSiCtTr~vtGvG~P-QltAV~~~a~~a~~~gvpiIA---------DG 220 (346)
T PRK05096 154 ICAGNVVTGEMVEEL---ILSGADIVKVGIGPGSVCTTRVKTGVGYP-QLSAVIECADAAHGLGGQIVS---------DG 220 (346)
T ss_pred EEEecccCHHHHHHH---HHcCCCEEEEcccCCccccCccccccChh-HHHHHHHHHHHHHHcCCCEEe---------cC
Confidence 445567888887764 335 9999866443222221 12 234445677778889999995 11
Q ss_pred CCCChHHHHHHHHHHHhcccccccc
Q 024709 80 PIPTRAEVADVSELVRQQADALMLS 104 (264)
Q Consensus 80 ~~ptrae~~dv~~~v~~g~d~~~ls 104 (264)
.. ----|++.|+..|+|+|||.
T Consensus 221 Gi---~~sGDI~KAlaaGAd~VMlG 242 (346)
T PRK05096 221 GC---TVPGDVAKAFGGGADFVMLG 242 (346)
T ss_pred Cc---ccccHHHHHHHcCCCEEEeC
Confidence 11 22369999999999999996
No 68
>PRK15447 putative protease; Provisional
Probab=78.54 E-value=12 Score=34.72 Aligned_cols=67 Identities=12% Similarity=0.085 Sum_probs=48.2
Q ss_pred cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhcccccccc
Q 024709 29 SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLS 104 (264)
Q Consensus 29 ~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls 104 (264)
+|+|.+|=..++.-.+. -..-.+++++.|+++||.+.++|--+ .....|...+...+..|.|+|+.+
T Consensus 29 aDaVY~g~~~~~~R~~f--~~~~l~e~v~~~~~~gkkvyva~p~i-------~~~~~e~~~l~~~l~~~~~~v~v~ 95 (301)
T PRK15447 29 VDIVYLGETVCSKRREL--KVGDWLELAERLAAAGKEVVLSTLAL-------VEAPSELKELRRLVENGEFLVEAN 95 (301)
T ss_pred CCEEEECCccCCCccCC--CHHHHHHHHHHHHHcCCEEEEEeccc-------ccCHHHHHHHHHHHhcCCCEEEEe
Confidence 99999996666654432 33556788999999999999977211 122457777888888888887753
No 69
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=78.52 E-value=9.3 Score=35.17 Aligned_cols=117 Identities=17% Similarity=0.248 Sum_probs=73.9
Q ss_pred ceEEEeccCHHHHhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhh---hhhhhCCCC
Q 024709 7 IAVIAKIESIDSLKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLL---ESMIEYPIP 82 (264)
Q Consensus 7 ~~iiakIE~~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~l---eSM~~~~~p 82 (264)
+.|.-....-.-++.+.+-+.. .+.||+...+| |.++....-+++.+.|+++|.+|-..-..+ |.++....-
T Consensus 75 vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s~l----~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~ 150 (282)
T TIGR01859 75 VPVALHLDHGSSYESCIKAIKAGFSSVMIDGSHL----PFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEA 150 (282)
T ss_pred CeEEEECCCCCCHHHHHHHHHcCCCEEEECCCCC----CHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCcccccccccc
Confidence 5566666654445555565665 78899987766 678888999999999999998765332221 111100000
Q ss_pred ChHHHHHHHHHHH-hccccccccccccCCCC---hHHHHHHHHHHHHHH
Q 024709 83 TRAEVADVSELVR-QQADALMLSGESAMGQF---PDKALAVLRSVSLRI 127 (264)
Q Consensus 83 trae~~dv~~~v~-~g~d~~~ls~eta~G~y---P~eav~~m~~i~~~~ 127 (264)
+.-...++..++. .|+|++-.|--|..|.| |.--++.+++|++..
T Consensus 151 ~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~ 199 (282)
T TIGR01859 151 ELADPDEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELT 199 (282)
T ss_pred ccCCHHHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHh
Confidence 0112334467886 89999998877877777 434455666665543
No 70
>PRK15452 putative protease; Provisional
Probab=78.18 E-value=7 Score=38.35 Aligned_cols=87 Identities=13% Similarity=0.152 Sum_probs=56.8
Q ss_pred ceEEEeccCHHHHhcHHHHHhh-cceeeecCCCcccCCCC--CChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCC
Q 024709 7 IAVIAKIESIDSLKNLNEIILA-SDGAMVARGDLGAQVPL--EQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPT 83 (264)
Q Consensus 7 ~~iiakIE~~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~--~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~pt 83 (264)
+.+.+...+.++++ .-+.. +|.|.+|-..++.--.. -.. +-.++.++.|+++|+.+.+++. ..|.
T Consensus 4 peLlapag~~e~l~---aAi~~GADaVY~G~~~~~~R~~~~~f~~-edl~eav~~ah~~g~kvyvt~n--------~i~~ 71 (443)
T PRK15452 4 PELLSPAGTLKNMR---YAFAYGADAVYAGQPRYSLRVRNNEFNH-ENLALGINEAHALGKKFYVVVN--------IAPH 71 (443)
T ss_pred cEEEEECCCHHHHH---HHHHCCCCEEEECCCccchhhhccCCCH-HHHHHHHHHHHHcCCEEEEEec--------CcCC
Confidence 45666666655544 34444 99999998888763321 011 2356789999999999999764 3444
Q ss_pred hHHHHHHH----HHHHhccccccccc
Q 024709 84 RAEVADVS----ELVRQQADALMLSG 105 (264)
Q Consensus 84 rae~~dv~----~~v~~g~d~~~ls~ 105 (264)
..|..+.. .....|+|+++.++
T Consensus 72 e~el~~~~~~l~~l~~~gvDgvIV~d 97 (443)
T PRK15452 72 NAKLKTFIRDLEPVIAMKPDALIMSD 97 (443)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 55554333 34456999999873
No 71
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=78.18 E-value=50 Score=29.97 Aligned_cols=77 Identities=12% Similarity=0.166 Sum_probs=53.6
Q ss_pred cceEEEeccCHHHHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChH
Q 024709 6 NIAVIAKIESIDSLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRA 85 (264)
Q Consensus 6 ~~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptra 85 (264)
.+.+++-+.+...++-+. +++|.+-||-+++. |..+++++.+.||||++.|.| .++-.
T Consensus 89 Gl~~~t~~~d~~~~~~l~---~~~d~lkI~s~~~~-----------n~~LL~~~a~~gkPVilk~G~--------~~t~~ 146 (260)
T TIGR01361 89 GLPVVTEVMDPRDVEIVA---EYADILQIGARNMQ-----------NFELLKEVGKQGKPVLLKRGM--------GNTIE 146 (260)
T ss_pred CCCEEEeeCChhhHHHHH---hhCCEEEECccccc-----------CHHHHHHHhcCCCcEEEeCCC--------CCCHH
Confidence 355667666666555554 45799999977762 234888889999999997643 34677
Q ss_pred HHHHHHHHHH-hcccccccc
Q 024709 86 EVADVSELVR-QQADALMLS 104 (264)
Q Consensus 86 e~~dv~~~v~-~g~d~~~ls 104 (264)
|+...+..+. .|.+=++|.
T Consensus 147 e~~~Ave~i~~~Gn~~i~l~ 166 (260)
T TIGR01361 147 EWLYAAEYILSSGNGNVILC 166 (260)
T ss_pred HHHHHHHHHHHcCCCcEEEE
Confidence 8777777665 577666775
No 72
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=77.71 E-value=3.7 Score=36.99 Aligned_cols=164 Identities=16% Similarity=0.193 Sum_probs=86.4
Q ss_pred hcHHHHHhh-----cceeeecCCCcccCCCCCChHHHHHHHHHHHH-HhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHH
Q 024709 20 KNLNEIILA-----SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCR-QLNKPVIVASQLLESMIEYPIPTRAEVADVSEL 93 (264)
Q Consensus 20 ~n~~eI~~~-----~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~-~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~ 93 (264)
++.+||++. .|+|||| |-++++. ..-.+++++++ +.+.|++. .|.-- +-
T Consensus 28 ~~~~ei~~~~~~~GTDaImIG-GS~gvt~------~~~~~~v~~ik~~~~lPvil------------fP~~~------~~ 82 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIG-GSDGVTE------ENVDNVVEAIKERTDLPVIL------------FPGSP------SG 82 (240)
T ss_pred cccHHHHHHHHHcCCCEEEEC-CcccccH------HHHHHHHHHHHhhcCCCEEE------------ecCCh------hc
Confidence 555555554 8999998 5444432 34457788888 89999997 66554 45
Q ss_pred HHhcccccccccccc--CCC----ChHHHHHHHHHHHHH--HHhhhhcccccccCCCCCCCCCCCCCchHHHHHHHHHHH
Q 024709 94 VRQQADALMLSGESA--MGQ----FPDKALAVLRSVSLR--IEKWCREGKQHATFEPPPISSSVSAGIPGEICNGAAKIA 165 (264)
Q Consensus 94 v~~g~d~~~ls~eta--~G~----yP~eav~~m~~i~~~--~E~~~~~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA 165 (264)
+..++|+++.-.=-. ... -.+++.+...++..+ .|.|+-....-..-+.-. ..+.+.+ .+.++-.+...+
T Consensus 83 is~~aDavff~svLNS~n~~~i~gaq~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~-A~~ip~~-~~~iaa~y~la~ 160 (240)
T COG1646 83 ISPYADAVFFPSVLNSDNPYWIVGAQVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGK-AKPIPLD-KEDIAAYYALAE 160 (240)
T ss_pred cCccCCeEEEEEEecCCCcccccchhhhhhHHHHhhhheecceEEEEECCCCceeeecc-cccCCCC-cHHHHHHHHHHH
Confidence 566999886521111 111 234555555554422 111111000000000000 0011222 345666666666
Q ss_pred HhcCCcEEEEEcCCch----HHHHHhhcCCCCcEEEE--cCChhhhhhccc
Q 024709 166 NKLKASALFVYTKTGQ----MASLLSRSRPDCPIFAF--APMSSVRRRLNL 210 (264)
Q Consensus 166 ~~l~A~aIVv~T~sG~----tA~~iSr~RP~~PIiAv--T~~~~~aR~L~L 210 (264)
+-++-..+-+=-.||. ....+++.....|++.- -++...||++..
T Consensus 161 ~~~g~~~~YlEagsga~~Pv~~e~v~~v~~~~~LivGGGIrs~E~A~~~a~ 211 (240)
T COG1646 161 KYLGMPVVYLEAGSGAGDPVPVEMVSRVLSDTPLIVGGGIRSPEQAREMAE 211 (240)
T ss_pred HHhCCeEEEEEecCCCCCCcCHHHHHHhhccceEEEcCCcCCHHHHHHHHH
Confidence 6778875555444444 35567777776666653 366777776644
No 73
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=77.42 E-value=14 Score=33.49 Aligned_cols=81 Identities=20% Similarity=0.245 Sum_probs=53.3
Q ss_pred cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhcccccccccccc
Q 024709 29 SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESA 108 (264)
Q Consensus 29 ~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta 108 (264)
+-.+|.-=.-.|.-.|+.. +...+.|++.. ..|||+ ....-+ -+|++.+...|+|+|+++.-.+
T Consensus 145 caavMPlgsPIGSg~Gi~n-~~~l~~i~~~~---~vPvIv---------DAGiG~---pSdaa~AMElG~daVLvNTAiA 208 (247)
T PF05690_consen 145 CAAVMPLGSPIGSGRGIQN-PYNLRIIIERA---DVPVIV---------DAGIGT---PSDAAQAMELGADAVLVNTAIA 208 (247)
T ss_dssp -SEBEEBSSSTTT---SST-HHHHHHHHHHG---SSSBEE---------ES---S---HHHHHHHHHTT-SEEEESHHHH
T ss_pred CCEEEecccccccCcCCCC-HHHHHHHHHhc---CCcEEE---------eCCCCC---HHHHHHHHHcCCceeehhhHHh
Confidence 5677775555555555555 45555565444 999998 333222 2577999999999999999999
Q ss_pred CCCChHHHHHHHHHHHH
Q 024709 109 MGQFPDKALAVLRSVSL 125 (264)
Q Consensus 109 ~G~yP~eav~~m~~i~~ 125 (264)
..+.|+.-.+-|+.-+.
T Consensus 209 ~A~dPv~MA~Af~~AV~ 225 (247)
T PF05690_consen 209 KAKDPVAMARAFKLAVE 225 (247)
T ss_dssp TSSSHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 99999987777765443
No 74
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=76.79 E-value=9.1 Score=37.95 Aligned_cols=85 Identities=16% Similarity=0.211 Sum_probs=56.3
Q ss_pred cceEEE-eccCHHHHhcHHHHHhhcceeeec--CCCcccCCCCCC----hHHHHHHHHHHHHHhCCCEEEEhhhhhhhhh
Q 024709 6 NIAVIA-KIESIDSLKNLNEIILASDGAMVA--RGDLGAQVPLEQ----VPSIQEKIVQLCRQLNKPVIVASQLLESMIE 78 (264)
Q Consensus 6 ~~~iia-kIE~~~~~~n~~eI~~~~Dgi~i~--rgdL~~~~~~~~----v~~~qk~ii~~~~~~gkpv~~atq~leSM~~ 78 (264)
++.||+ -+-|.++..++.+ .=+|+|=|| +|-....-+.-. -..+..++.+.|++.|+|||....
T Consensus 268 ~~~v~agnv~t~~~a~~l~~--aGad~v~vgig~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~gg------- 338 (479)
T PRK07807 268 GVPIVAGNVVTAEGTRDLVE--AGADIVKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGG------- 338 (479)
T ss_pred CCeEEeeccCCHHHHHHHHH--cCCCEEEECccCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCC-------
Confidence 467888 9999998888765 228998854 333322222211 223345566666678999997442
Q ss_pred CCCCChHHHHHHHHHHHhcccccccc
Q 024709 79 YPIPTRAEVADVSELVRQQADALMLS 104 (264)
Q Consensus 79 ~~~ptrae~~dv~~~v~~g~d~~~ls 104 (264)
..+. .|++.++..|+|++|+.
T Consensus 339 --i~~~---~~~~~al~~ga~~v~~g 359 (479)
T PRK07807 339 --VRHP---RDVALALAAGASNVMIG 359 (479)
T ss_pred --CCCH---HHHHHHHHcCCCeeecc
Confidence 2222 58899999999999996
No 75
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=76.54 E-value=5.3 Score=35.68 Aligned_cols=173 Identities=15% Similarity=0.240 Sum_probs=89.7
Q ss_pred HHHhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHH
Q 024709 17 DSLKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVR 95 (264)
Q Consensus 17 ~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~ 95 (264)
...+.++.+++. .|+|||| |=+++.- + --.+++++++++..|+++ .|... +.+.
T Consensus 15 ~~~~~~~~~~~~gtdai~vG-GS~~vt~--~----~~~~~v~~ik~~~lPvil------------fp~~~------~~i~ 69 (223)
T TIGR01768 15 EADEIAKAAAESGTDAILIG-GSQGVTY--E----KTDTLIEALRRYGLPIIL------------FPSNP------TNVS 69 (223)
T ss_pred ccHHHHHHHHhcCCCEEEEc-CCCcccH--H----HHHHHHHHHhccCCCEEE------------eCCCc------cccC
Confidence 456677788887 8999998 4333321 2 334567777888999997 66554 5667
Q ss_pred hccccccccccccCCCCh-------HHHHHHHHHHHHHH--Hhhh--hcccccccCCCCCCCCCCCCCchHHHHHHHHHH
Q 024709 96 QQADALMLSGESAMGQFP-------DKALAVLRSVSLRI--EKWC--REGKQHATFEPPPISSSVSAGIPGEICNGAAKI 164 (264)
Q Consensus 96 ~g~d~~~ls~eta~G~yP-------~eav~~m~~i~~~~--E~~~--~~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~l 164 (264)
.|+|+++.-.= -+|..| .+++..+.+...++ |-|+ +....-.... -..+.|.+. +.++..+.-+
T Consensus 70 ~~aDa~l~~sv-lNs~~~~~iig~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~---~a~~~p~~~-~~~aa~~~lA 144 (223)
T TIGR01768 70 RDADALFFPSV-LNSDDPYWIIGAQIEAAPKFKKIGEEIIPEGYIIVNPGGAAARVT---KAKPIPYDK-EDLAAYAAMA 144 (223)
T ss_pred cCCCEEEEEEe-ecCCCchHHHhHHHHHHHHHhhhcceecceEEEEECCCcceeecc---cccccCCCc-HHHHHHHHHH
Confidence 89999877431 223333 34444443332110 0111 0000000000 001122333 4455555555
Q ss_pred HHhcCCcEEEEEcCCch-------HHHHHhhcCCCCcEEEE--cCChhhhhhcccccccEEEEec
Q 024709 165 ANKLKASALFVYTKTGQ-------MASLLSRSRPDCPIFAF--APMSSVRRRLNLQWGLVPFCLN 220 (264)
Q Consensus 165 A~~l~A~aIVv~T~sG~-------tA~~iSr~RP~~PIiAv--T~~~~~aR~L~L~~GV~P~~~~ 220 (264)
++=++-+.+..--.||+ ..+.+.+.-...|++.- -++.+.++++ +.+|.--+.+.
T Consensus 145 ~~~~g~~~vYlE~gs~~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l-~~aGAD~VVVG 208 (223)
T TIGR01768 145 EEMLGMPIIYLEAGSGAPEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREM-AEAGADTIVTG 208 (223)
T ss_pred HHHcCCcEEEEEecCCCCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHH-HHcCCCEEEEC
Confidence 66578885555544444 23444444456787553 3555566654 34466666554
No 76
>PRK00208 thiG thiazole synthase; Reviewed
Probab=75.91 E-value=49 Score=30.12 Aligned_cols=83 Identities=22% Similarity=0.233 Sum_probs=55.9
Q ss_pred cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhcccccccccccc
Q 024709 29 SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESA 108 (264)
Q Consensus 29 ~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta 108 (264)
+|.||.-=...|...|..+ +...+.+.+. .+.||++-. ..-|. +|++.++..|+|+|++++=.+
T Consensus 145 ~~~vmPlg~pIGsg~gi~~-~~~i~~i~e~---~~vpVIvea---------GI~tp---eda~~AmelGAdgVlV~SAIt 208 (250)
T PRK00208 145 CAAVMPLGAPIGSGLGLLN-PYNLRIIIEQ---ADVPVIVDA---------GIGTP---SDAAQAMELGADAVLLNTAIA 208 (250)
T ss_pred CCEeCCCCcCCCCCCCCCC-HHHHHHHHHh---cCCeEEEeC---------CCCCH---HHHHHHHHcCCCEEEEChHhh
Confidence 6777652133334445444 5555555554 478999833 23222 477999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHH
Q 024709 109 MGQFPDKALAVLRSVSLRI 127 (264)
Q Consensus 109 ~G~yP~eav~~m~~i~~~~ 127 (264)
.++.|..-.+.+..-+..-
T Consensus 209 ka~dP~~ma~af~~Av~aG 227 (250)
T PRK00208 209 VAGDPVAMARAFKLAVEAG 227 (250)
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999988777776655443
No 77
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=75.63 E-value=11 Score=37.49 Aligned_cols=84 Identities=20% Similarity=0.298 Sum_probs=53.9
Q ss_pred cceEEEe-ccCHHHHhcHHHHHhhcceeeec--CCCcccC-----CCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhh
Q 024709 6 NIAVIAK-IESIDSLKNLNEIILASDGAMVA--RGDLGAQ-----VPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMI 77 (264)
Q Consensus 6 ~~~iiak-IE~~~~~~n~~eI~~~~Dgi~i~--rgdL~~~-----~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~ 77 (264)
+..||++ |-|.+.-.++.+ .=+|+|.++ +|--+.. .+.+.+ .....+-+.+++.++|||....+-
T Consensus 289 ~~~vi~g~v~t~e~a~~a~~--aGaD~i~vg~g~G~~~~t~~~~~~g~~~~-~~i~~~~~~~~~~~vpVIadGGI~---- 361 (505)
T PLN02274 289 ELDVIGGNVVTMYQAQNLIQ--AGVDGLRVGMGSGSICTTQEVCAVGRGQA-TAVYKVASIAAQHGVPVIADGGIS---- 361 (505)
T ss_pred CCcEEEecCCCHHHHHHHHH--cCcCEEEECCCCCccccCccccccCCCcc-cHHHHHHHHHHhcCCeEEEeCCCC----
Confidence 4566664 888887666554 229999886 4422211 122222 233336666777899999855332
Q ss_pred hCCCCChHHHHHHHHHHHhcccccccc
Q 024709 78 EYPIPTRAEVADVSELVRQQADALMLS 104 (264)
Q Consensus 78 ~~~~ptrae~~dv~~~v~~g~d~~~ls 104 (264)
+ -.|+..|+..|||+||+.
T Consensus 362 -----~---~~di~kAla~GA~~V~vG 380 (505)
T PLN02274 362 -----N---SGHIVKALTLGASTVMMG 380 (505)
T ss_pred -----C---HHHHHHHHHcCCCEEEEc
Confidence 2 268899999999999996
No 78
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=75.60 E-value=2.8 Score=40.40 Aligned_cols=80 Identities=25% Similarity=0.336 Sum_probs=51.9
Q ss_pred HHhcCCcEEEEEcCCchHHHHHh----hcCCCCcEEEEcCChhhhhhcccccccEEEEecCCC------CHHHH----HH
Q 024709 165 ANKLKASALFVYTKTGQMASLLS----RSRPDCPIFAFAPMSSVRRRLNLQWGLVPFCLNFSD------DMESN----LN 230 (264)
Q Consensus 165 A~~l~A~aIVv~T~sG~tA~~iS----r~RP~~PIiAvT~~~~~aR~L~L~~GV~P~~~~~~~------~~e~~----i~ 230 (264)
-.+.+++++||.|.||+||-.+| -..|.+|-|.+||=. .+.|++ .|+++|... +.+.. +.
T Consensus 281 iT~vq~DGliVaTPTGSTAYS~sAGGSlvhP~vpAIlvTPIC--PhSLSF----RPIIlPds~~L~I~i~~dsR~~awvS 354 (409)
T KOG2178|consen 281 ITKVQGDGLIVATPTGSTAYSASAGGSLVHPSVPAILVTPIC--PHSLSF----RPIILPDSSELRVEVPLDSRSTAWVS 354 (409)
T ss_pred EEEEecceEEEecCCchhhhHhhcCCceecCCCCeEEEeccC--CCcccc----cceEccCccEEEEEeCccccccceEE
Confidence 34568999999999999999997 478999999999832 122333 355544311 11111 11
Q ss_pred HHHHHHHHcCCCCCCCEEEEEec
Q 024709 231 QTFSLLKARGLIKSGDLIIVVSD 253 (264)
Q Consensus 231 ~al~~~~~~g~~~~GD~VVvvsG 253 (264)
. -.+.+.-+..||.+-+++.
T Consensus 355 f---DG~~r~El~~GD~i~I~tS 374 (409)
T KOG2178|consen 355 F---DGRPRQELSLGDYIDITTS 374 (409)
T ss_pred e---cCcchhhccCCceEEEEec
Confidence 1 1334445789999998876
No 79
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=75.47 E-value=29 Score=29.89 Aligned_cols=60 Identities=25% Similarity=0.321 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHhcCC-cEEEEEcCCchHH-------HHHhhc---CCCCcEEEEcCChhhhhhcccccc
Q 024709 154 PGEICNGAAKIANKLKA-SALFVYTKTGQMA-------SLLSRS---RPDCPIFAFAPMSSVRRRLNLQWG 213 (264)
Q Consensus 154 ~~aIA~aAv~lA~~l~A-~aIVv~T~sG~tA-------~~iSr~---RP~~PIiAvT~~~~~aR~L~L~~G 213 (264)
.+.|-.++..++..+.. +-|+++-+.|+.+ .++.|| ||..|-+|+|.|.+..-.+..-+|
T Consensus 24 ~~~I~~aa~~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~NDy~ 94 (176)
T COG0279 24 IEAIERAAQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIANDYG 94 (176)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhhcccc
Confidence 46677777777666644 4589999999853 344454 699999999988877665555444
No 80
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=75.43 E-value=6.1 Score=36.54 Aligned_cols=111 Identities=17% Similarity=0.312 Sum_probs=66.6
Q ss_pred eEEEeccCHHHHhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCE-EEEhhhh---hhhhhCCCC
Q 024709 8 AVIAKIESIDSLKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPV-IVASQLL---ESMIEYPIP 82 (264)
Q Consensus 8 ~iiakIE~~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv-~~atq~l---eSM~~~~~p 82 (264)
.|......-.-++.+.+=++. .+.||+. |-++|.++-...-+++++.|+.+|.+| +=-.++- +..... .-
T Consensus 76 PV~lHLDH~~~~e~i~~Ai~~GftSVM~D----gS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~-~~ 150 (283)
T PRK07998 76 PVSLHLDHGKTFEDVKQAVRAGFTSVMID----GAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSE-AD 150 (283)
T ss_pred CEEEECcCCCCHHHHHHHHHcCCCEEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCcccccccc-cc
Confidence 344444444334444444444 8999995 345788888889999999999999998 2111110 000000 00
Q ss_pred ChHHHHHHHHHHH-hccccccccccccCCCCh--HHHHHHHHHH
Q 024709 83 TRAEVADVSELVR-QQADALMLSGESAMGQFP--DKALAVLRSV 123 (264)
Q Consensus 83 trae~~dv~~~v~-~g~d~~~ls~eta~G~yP--~eav~~m~~i 123 (264)
...+..+...++. -|+|++-.+--|+.|.|+ ---...+.+|
T Consensus 151 ~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I 194 (283)
T PRK07998 151 CKTEPEKVKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRI 194 (283)
T ss_pred ccCCHHHHHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHH
Confidence 0112234466664 699999999999999994 3223444444
No 81
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=75.32 E-value=18 Score=34.80 Aligned_cols=108 Identities=12% Similarity=0.167 Sum_probs=64.1
Q ss_pred cceEEEeccCHHHHhcHHHHHhh-----cceeee-----cCCC-----------c------ccCCCCCChHHHHHHHHHH
Q 024709 6 NIAVIAKIESIDSLKNLNEIILA-----SDGAMV-----ARGD-----------L------GAQVPLEQVPSIQEKIVQL 58 (264)
Q Consensus 6 ~~~iiakIE~~~~~~n~~eI~~~-----~Dgi~i-----~rgd-----------L------~~~~~~~~v~~~qk~ii~~ 58 (264)
++.|+.||= + .+.++.+|++. +|||.+ +|-+ | |.=-|....+...+.|-+.
T Consensus 168 ~~Pv~vKl~-p-~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~ 245 (420)
T PRK08318 168 RLPVIVKLT-P-NITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEI 245 (420)
T ss_pred CCcEEEEcC-C-CcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHH
Confidence 578999994 3 45567777664 899882 2211 1 1111234455566666665
Q ss_pred HHHh---CCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhh
Q 024709 59 CRQL---NKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCR 132 (264)
Q Consensus 59 ~~~~---gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~ 132 (264)
.+.. ..|+|-.+.+. ...|+...++.|||+||+..-.-. +-| ..+.+|..+-+.|+.
T Consensus 246 ~~~~~~~~ipIig~GGI~------------s~~da~e~i~aGA~~Vqi~ta~~~-~gp----~ii~~I~~~L~~~l~ 305 (420)
T PRK08318 246 ARDPETRGLPISGIGGIE------------TWRDAAEFILLGAGTVQVCTAAMQ-YGF----RIVEDMISGLSHYMD 305 (420)
T ss_pred HhccccCCCCEEeecCcC------------CHHHHHHHHHhCCChheeeeeecc-CCc----hhHHHHHHHHHHHHH
Confidence 5554 56888644332 345889999999999999844332 123 334455555555544
No 82
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=75.14 E-value=2.7 Score=38.37 Aligned_cols=53 Identities=23% Similarity=0.272 Sum_probs=39.1
Q ss_pred hcCCcEEEEEcCCchHHHHHhh----cCCCCcEEEEcCChhhhhhcccccccE-EEEecC
Q 024709 167 KLKASALFVYTKTGQMASLLSR----SRPDCPIFAFAPMSSVRRRLNLQWGLV-PFCLNF 221 (264)
Q Consensus 167 ~l~A~aIVv~T~sG~tA~~iSr----~RP~~PIiAvT~~~~~aR~L~L~~GV~-P~~~~~ 221 (264)
+..++.+++-|.+|+||-.+|- ..|.++.+.+||=..+.. +.+++.. |+.++.
T Consensus 145 ~~~gDGlIVsTptGSTAYslSaGGPIv~P~~~~~~ltPI~~l~~--r~~~~~~~plVl~~ 202 (265)
T PRK04885 145 RFRGDGLCVSTPTGSTAYNKSLGGAVLHPSIEALQLTEIASINN--RVFRTLGSPLILPK 202 (265)
T ss_pred EEEcCEEEEECCCChHHHHhhCCCceeCCCCCeEEEEeeccccc--cccccCCCCEEECC
Confidence 4578999999999999999997 779999999998652211 1233333 676654
No 83
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=74.92 E-value=42 Score=30.59 Aligned_cols=90 Identities=20% Similarity=0.218 Sum_probs=55.6
Q ss_pred HHHHHHHHhccccccccccccCCCCh------HHHHHHHHHHHHHHHhhhhcccccccCCCCCCCCCCCCCchHHHHHHH
Q 024709 88 ADVSELVRQQADALMLSGESAMGQFP------DKALAVLRSVSLRIEKWCREGKQHATFEPPPISSSVSAGIPGEICNGA 161 (264)
Q Consensus 88 ~dv~~~v~~g~d~~~ls~eta~G~yP------~eav~~m~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~aIA~aA 161 (264)
.|-...-.-|+|++|+.+. |+.| -+++..|..|.++.-+... .+ +.. +...-=+.+|
T Consensus 38 ~dA~~leegG~DavivEN~---gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~---------iP-vGv----NVLrNd~vaA 100 (263)
T COG0434 38 RDAAALEEGGVDAVIVENY---GDAPFLKDVGPETVAAMAVIVREVVREVS---------IP-VGV----NVLRNDAVAA 100 (263)
T ss_pred HHHHHHHhCCCcEEEEecc---CCCCCCCCCChHHHHHHHHHHHHHHHhcc---------cc-cee----eeeccccHHH
Confidence 5666667789999999864 5554 4789999999888654211 11 000 1111123466
Q ss_pred HHHHHhcCCcEEE-------EEcCCch---HHHHHhhcCCCCc
Q 024709 162 AKIANKLKASALF-------VYTKTGQ---MASLLSRSRPDCP 194 (264)
Q Consensus 162 v~lA~~l~A~aIV-------v~T~sG~---tA~~iSr~RP~~P 194 (264)
..+|...+|+.|= .+|..|- -|..+.|||+..+
T Consensus 101 ~~IA~a~gA~FIRVN~~tg~~~tdqGiieg~A~e~~r~r~~L~ 143 (263)
T COG0434 101 LAIAYAVGADFIRVNVLTGAYATDQGIIEGNAAELARYRARLG 143 (263)
T ss_pred HHHHHhcCCCEEEEEeeeceEecccceecchHHHHHHHHHhcc
Confidence 7777888898876 3555554 3666777775444
No 84
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=74.34 E-value=50 Score=29.88 Aligned_cols=125 Identities=16% Similarity=0.165 Sum_probs=73.7
Q ss_pred HHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhh
Q 024709 53 EKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCR 132 (264)
Q Consensus 53 k~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~ 132 (264)
.-+...|+++|.|+.+. .|..+...-+...-..|++.+...+... + ...++++...++.++-+.+
T Consensus 66 ~alA~~a~~~G~~~~i~-----------vp~~~~~~k~~~~~~~Ga~v~~~~~~~~-~-~~~~~~~~a~~~~~~~~~~-- 130 (291)
T cd01561 66 IGLAMVAAAKGYRFIIV-----------MPETMSEEKRKLLRALGAEVILTPEAEA-D-GMKGAIAKARELAAETPNA-- 130 (291)
T ss_pred HHHHHHHHHcCCeEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCCCCc-C-CHHHHHHHHHHHHhhCCCc--
Confidence 45667899999999983 3333333444566678999877753311 1 1245555554443221011
Q ss_pred cccccccCCCCCCCCCCCCCchHHHH-HHHHHHHHhcC--CcEEEEEcCCchHHHHH----hhcCCCCcEEEEcCCh
Q 024709 133 EGKQHATFEPPPISSSVSAGIPGEIC-NGAAKIANKLK--ASALFVYTKTGQMASLL----SRSRPDCPIFAFAPMS 202 (264)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~aIA-~aAv~lA~~l~--A~aIVv~T~sG~tA~~i----Sr~RP~~PIiAvT~~~ 202 (264)
++..+. . .+.. .+.-. .-+.++.++++ .+.||+.+-+|.++.-+ ..++|...|+++-+..
T Consensus 131 -------~~~~~~-~-~p~~-~~g~~~t~~~Ei~~ql~~~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~ 197 (291)
T cd01561 131 -------FWLNQF-E-NPAN-PEAHYETTAPEIWEQLDGKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVG 197 (291)
T ss_pred -------EEecCC-C-CchH-HHHHHHHHHHHHHHHcCCCCCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 111111 1 1111 12222 44567778876 68999999999976544 4577999999999864
No 85
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=74.26 E-value=14 Score=34.06 Aligned_cols=88 Identities=20% Similarity=0.256 Sum_probs=54.3
Q ss_pred cceEEEeccCHHHHhcHHHHHhh-----cceeeec-----CCCc-----------------ccCCCCCChHHHHHHHHHH
Q 024709 6 NIAVIAKIESIDSLKNLNEIILA-----SDGAMVA-----RGDL-----------------GAQVPLEQVPSIQEKIVQL 58 (264)
Q Consensus 6 ~~~iiakIE~~~~~~n~~eI~~~-----~Dgi~i~-----rgdL-----------------~~~~~~~~v~~~qk~ii~~ 58 (264)
++.|+.||-- .+.+++++++. +|||.+. |-++ +.=-|....+...+.+-+.
T Consensus 168 ~~Pv~vKl~~--~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~ 245 (299)
T cd02940 168 KIPVIAKLTP--NITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQI 245 (299)
T ss_pred CCCeEEECCC--CchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHH
Confidence 5789999852 34566666663 8998741 1111 1111223345556666666
Q ss_pred HHHh--CCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccc
Q 024709 59 CRQL--NKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGES 107 (264)
Q Consensus 59 ~~~~--gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~et 107 (264)
.+.. ..|+|..+-+. ...|+..+++.|||+||+..-.
T Consensus 246 ~~~~~~~ipIig~GGI~------------~~~da~~~l~aGA~~V~i~ta~ 284 (299)
T cd02940 246 ARAPEPGLPISGIGGIE------------SWEDAAEFLLLGASVVQVCTAV 284 (299)
T ss_pred HHhcCCCCcEEEECCCC------------CHHHHHHHHHcCCChheEceee
Confidence 6666 68888755332 2358899999999999997543
No 86
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=74.13 E-value=82 Score=30.12 Aligned_cols=139 Identities=14% Similarity=0.205 Sum_probs=80.8
Q ss_pred cceEEEeccCHHHHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChH
Q 024709 6 NIAVIAKIESIDSLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRA 85 (264)
Q Consensus 6 ~~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptra 85 (264)
.+.+++-+-+.+.++-+.+ ++|.+-||-+++. . -.+++++-+.||||++.|.| .+|-.
T Consensus 165 Gl~~~tev~d~~~v~~~~~---~~d~lqIga~~~~------n-----~~LL~~va~t~kPVllk~G~--------~~t~e 222 (352)
T PRK13396 165 GLGIITEVMDAADLEKIAE---VADVIQVGARNMQ------N-----FSLLKKVGAQDKPVLLKRGM--------AATID 222 (352)
T ss_pred CCcEEEeeCCHHHHHHHHh---hCCeEEECccccc------C-----HHHHHHHHccCCeEEEeCCC--------CCCHH
Confidence 3566776666666655554 4899999977662 2 34588888999999996643 45778
Q ss_pred HHHHHHHHHHh-cccccccccc---ccCCCChHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCCC-CCCCchHHHHHH
Q 024709 86 EVADVSELVRQ-QADALMLSGE---SAMGQFPDKALAVLRSVSLRIEKWCREGKQHATFEPPPISSS-VSAGIPGEICNG 160 (264)
Q Consensus 86 e~~dv~~~v~~-g~d~~~ls~e---ta~G~yP~eav~~m~~i~~~~E~~~~~~~~~~~~~~~~~~~~-~~~~~~~aIA~a 160 (264)
|+...+..+.. |.+-++|..- |....||.+.+.+ +.|.. +.+ .++.+-+.++ ......+.+. .
T Consensus 223 e~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl-~ai~~-----lk~-----~~~lPVi~DpsH~~G~sd~~~-~ 290 (352)
T PRK13396 223 EWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDL-SVIPV-----LRS-----LTHLPIMIDPSHGTGKSEYVP-S 290 (352)
T ss_pred HHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCH-HHHHH-----HHH-----hhCCCEEECCcccCCcHHHHH-H
Confidence 88777777654 7766777633 3344677443332 11110 110 1111211111 0112223332 5
Q ss_pred HHHHHHhcCCcEEEEEcC
Q 024709 161 AAKIANKLKASALFVYTK 178 (264)
Q Consensus 161 Av~lA~~l~A~aIVv~T~ 178 (264)
...+|-.++|+.+++=++
T Consensus 291 ~a~AAva~GAdGliIE~H 308 (352)
T PRK13396 291 MAMAAIAAGTDSLMIEVH 308 (352)
T ss_pred HHHHHHhhCCCeEEEEec
Confidence 667778889998887654
No 87
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=74.08 E-value=3.1 Score=38.19 Aligned_cols=38 Identities=26% Similarity=0.369 Sum_probs=32.8
Q ss_pred HHhcCCcEEEEEcCCchHHHHHhh----cCCCCcEEEEcCCh
Q 024709 165 ANKLKASALFVYTKTGQMASLLSR----SRPDCPIFAFAPMS 202 (264)
Q Consensus 165 A~~l~A~aIVv~T~sG~tA~~iSr----~RP~~PIiAvT~~~ 202 (264)
.++..+++++|-|.||+||-.+|- ..|..+.+.+||-.
T Consensus 161 ~~~~r~DGliVsTPTGSTAY~lSAGGPIv~P~l~ai~ltpi~ 202 (281)
T COG0061 161 FESFRGDGLIVSTPTGSTAYNLSAGGPILHPGLDAIQLTPIC 202 (281)
T ss_pred EEEEecCEEEEEcCCcHHHHhhhcCCCccCCCCCeEEEeecC
Confidence 345689999999999999999996 56899999999854
No 88
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=74.02 E-value=3.9 Score=36.38 Aligned_cols=61 Identities=25% Similarity=0.453 Sum_probs=38.7
Q ss_pred hcHHHHHhh--cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhc
Q 024709 20 KNLNEIILA--SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQ 97 (264)
Q Consensus 20 ~n~~eI~~~--~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g 97 (264)
+.+++++.. .|+|||| |=++++ +.+....+. +++.++ ..|++. .|... +.+..|
T Consensus 15 ~~~~~~~~~~gtdai~vG-GS~~v~---~~~~~~~~~-ik~~~~-~~Pvil------------fp~~~------~~i~~~ 70 (219)
T cd02812 15 EEIAKLAEESGTDAIMVG-GSDGVS---STLDNVVRL-IKRIRR-PVPVIL------------FPSNP------EAVSPG 70 (219)
T ss_pred HHHHHHHHhcCCCEEEEC-Cccchh---hhHHHHHHH-HHHhcC-CCCEEE------------eCCCc------cccCcC
Confidence 447777774 6999999 555554 222222222 222333 699997 77775 556799
Q ss_pred ccccccc
Q 024709 98 ADALMLS 104 (264)
Q Consensus 98 ~d~~~ls 104 (264)
+|+++.-
T Consensus 71 aDa~l~~ 77 (219)
T cd02812 71 ADAYLFP 77 (219)
T ss_pred CCEEEEE
Confidence 9998875
No 89
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=73.75 E-value=25 Score=33.98 Aligned_cols=90 Identities=16% Similarity=0.193 Sum_probs=61.2
Q ss_pred cceEEEec---cCHHHHhcHHHHHhh--cceeeecCC--------CcccCCCCCChHHHHHHHHHHHHHh-CCCEEEEhh
Q 024709 6 NIAVIAKI---ESIDSLKNLNEIILA--SDGAMVARG--------DLGAQVPLEQVPSIQEKIVQLCRQL-NKPVIVASQ 71 (264)
Q Consensus 6 ~~~iiakI---E~~~~~~n~~eI~~~--~Dgi~i~rg--------dL~~~~~~~~v~~~qk~ii~~~~~~-gkpv~~atq 71 (264)
.+.+|+-| .+++...++-+.++. +|++=+.=+ ++|..++ .-++.-+++++.+++. .+|+++
T Consensus 113 ~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~g--q~~e~~~~i~~~Vk~~~~iPv~v--- 187 (385)
T PLN02495 113 DRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVG--QDCDLLEEVCGWINAKATVPVWA--- 187 (385)
T ss_pred CCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhc--cCHHHHHHHHHHHHHhhcCceEE---
Confidence 35677777 477777666555544 688765321 2232333 3478888888888874 799997
Q ss_pred hhhhhhhCCCCChHHHHHHHH-HHHhccccccccccc
Q 024709 72 LLESMIEYPIPTRAEVADVSE-LVRQQADALMLSGES 107 (264)
Q Consensus 72 ~leSM~~~~~ptrae~~dv~~-~v~~g~d~~~ls~et 107 (264)
...|...++.+++. +...|+|++.|.+=+
T Consensus 188 -------KLsPn~t~i~~ia~aa~~~Gadgi~liNT~ 217 (385)
T PLN02495 188 -------KMTPNITDITQPARVALKSGCEGVAAINTI 217 (385)
T ss_pred -------EeCCChhhHHHHHHHHHHhCCCEEEEeccc
Confidence 34576667878888 667889999998644
No 90
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=73.66 E-value=12 Score=31.85 Aligned_cols=38 Identities=16% Similarity=0.304 Sum_probs=28.5
Q ss_pred HHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhcccccccc
Q 024709 53 EKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLS 104 (264)
Q Consensus 53 k~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls 104 (264)
..+++.|+++|.|++. . .-|. +++..|...|+|.+.+.
T Consensus 87 ~~~~~~~~~~~~~~i~---------g--v~t~---~e~~~A~~~Gad~i~~~ 124 (190)
T cd00452 87 PEVVKAANRAGIPLLP---------G--VATP---TEIMQALELGADIVKLF 124 (190)
T ss_pred HHHHHHHHHcCCcEEC---------C--cCCH---HHHHHHHHCCCCEEEEc
Confidence 4689999999999875 1 1133 34577888999999984
No 91
>PRK07695 transcriptional regulator TenI; Provisional
Probab=73.60 E-value=20 Score=30.70 Aligned_cols=82 Identities=11% Similarity=0.039 Sum_probs=51.4
Q ss_pred cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhcccccccccccc
Q 024709 29 SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESA 108 (264)
Q Consensus 29 ~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta 108 (264)
+|.+++++-.-+..-+..... -.+.+-+.+...++|++....+ +. .++..+...|+|++.+++.-.
T Consensus 116 adyi~~g~v~~t~~k~~~~~~-g~~~l~~~~~~~~ipvia~GGI----------~~---~~~~~~~~~Ga~gvav~s~i~ 181 (201)
T PRK07695 116 ADYVVYGHVFPTDCKKGVPAR-GLEELSDIARALSIPVIAIGGI----------TP---ENTRDVLAAGVSGIAVMSGIF 181 (201)
T ss_pred CCEEEECCCCCCCCCCCCCCC-CHHHHHHHHHhCCCCEEEEcCC----------CH---HHHHHHHHcCCCEEEEEHHHh
Confidence 899998875443221110000 1122223344567999985532 22 345667789999999988877
Q ss_pred CCCChHHHHHHHHHHH
Q 024709 109 MGQFPDKALAVLRSVS 124 (264)
Q Consensus 109 ~G~yP~eav~~m~~i~ 124 (264)
....|.++++.+.++.
T Consensus 182 ~~~~p~~~~~~~~~~~ 197 (201)
T PRK07695 182 SSANPYSKAKRYAESI 197 (201)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 7788999999887754
No 92
>PRK12483 threonine dehydratase; Reviewed
Probab=73.33 E-value=45 Score=33.49 Aligned_cols=121 Identities=17% Similarity=0.230 Sum_probs=75.4
Q ss_pred HHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhh
Q 024709 53 EKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCR 132 (264)
Q Consensus 53 k~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~ 132 (264)
.-+...|+..|.|+.+- .|..+....+...-..|++.+.- |...-++.+...+++++ +.+
T Consensus 98 ~gvA~aA~~lGi~~~Iv-----------mP~~tp~~Kv~~~r~~GAeVil~------g~~~d~a~~~A~~la~e-~g~-- 157 (521)
T PRK12483 98 QGVALAAARLGVKAVIV-----------MPRTTPQLKVDGVRAHGGEVVLH------GESFPDALAHALKLAEE-EGL-- 157 (521)
T ss_pred HHHHHHHHHhCCCEEEE-----------ECCCCCHHHHHHHHHCCCEEEEE------CCCHHHHHHHHHHHHHh-cCC--
Confidence 45677899999999983 34333344556777799986653 33445676665555432 111
Q ss_pred cccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHHh----hcCCCCcEEEEcCChh
Q 024709 133 EGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLK--ASALFVYTKTGQMASLLS----RSRPDCPIFAFAPMSS 203 (264)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~--A~aIVv~T~sG~tA~~iS----r~RP~~PIiAvT~~~~ 203 (264)
++.++... + .....-..-+.++.++++ .+.||+..-+|.+.--++ .++|.+.||++-+...
T Consensus 158 -------~~v~pfdd--~-~viaGqgTig~EI~eQ~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a 224 (521)
T PRK12483 158 -------TFVPPFDD--P-DVIAGQGTVAMEILRQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDS 224 (521)
T ss_pred -------eeeCCCCC--h-HHHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCC
Confidence 11111111 1 122233444667777775 699999999999876665 4589999999997543
No 93
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=73.09 E-value=8.7 Score=35.53 Aligned_cols=112 Identities=21% Similarity=0.281 Sum_probs=70.8
Q ss_pred ceEEEeccCHHHHhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEE------EhhhhhhhhhC
Q 024709 7 IAVIAKIESIDSLKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIV------ASQLLESMIEY 79 (264)
Q Consensus 7 ~~iiakIE~~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~------atq~leSM~~~ 79 (264)
+.|.--...-.-++.+..-++. -+.||+. |-++|+++-....|++++.|+.+|.+|=. ..+ +.....
T Consensus 78 VPV~lHLDHg~~~e~i~~ai~~GftSVM~D----gS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~e--d~~~~~ 151 (285)
T PRK07709 78 VPVAIHLDHGSSFEKCKEAIDAGFTSVMID----ASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQE--DDVIAE 151 (285)
T ss_pred CcEEEECCCCCCHHHHHHHHHcCCCEEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCcc--CCcccc
Confidence 3455555555444444444554 7889997 45678899999999999999999998721 110 110000
Q ss_pred CCCChHHHHHHHHHHH-hccccccccccccCCCC---hHHHHHHHHHHHH
Q 024709 80 PIPTRAEVADVSELVR-QQADALMLSGESAMGQF---PDKALAVLRSVSL 125 (264)
Q Consensus 80 ~~ptrae~~dv~~~v~-~g~d~~~ls~eta~G~y---P~eav~~m~~i~~ 125 (264)
. -...+..|...++. -|+|++-.|--|+-|.| |---.+.+.+|..
T Consensus 152 ~-~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~ 200 (285)
T PRK07709 152 G-VIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRD 200 (285)
T ss_pred c-ccCCCHHHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHH
Confidence 0 00112234466775 59999999999999999 5444555666543
No 94
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=72.20 E-value=8.2 Score=38.49 Aligned_cols=83 Identities=17% Similarity=0.115 Sum_probs=47.0
Q ss_pred ceEEE-eccCHHHHhcHHHHHhh-cceeeecCCCcccCCCC--CChHHHH----HHHHHHHHH----hC--CCEEEEhhh
Q 024709 7 IAVIA-KIESIDSLKNLNEIILA-SDGAMVARGDLGAQVPL--EQVPSIQ----EKIVQLCRQ----LN--KPVIVASQL 72 (264)
Q Consensus 7 ~~iia-kIE~~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~--~~v~~~q----k~ii~~~~~----~g--kpv~~atq~ 72 (264)
+.|++ -|.|+++.+.+- +. +|+|.||.|-=++-... -.+..-| ..+.+.+++ .| +|+|.
T Consensus 285 ~~V~aGnV~t~e~a~~li---~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~via---- 357 (502)
T PRK07107 285 VKVGAGNVVDREGFRYLA---EAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICS---- 357 (502)
T ss_pred ceEEeccccCHHHHHHHH---HcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEE----
Confidence 33444 467776655543 45 89999965543211111 1122223 233333333 36 89886
Q ss_pred hhhhhhCCCCChHHHHHHHHHHHhcccccccc
Q 024709 73 LESMIEYPIPTRAEVADVSELVRQQADALMLS 104 (264)
Q Consensus 73 leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls 104 (264)
..... --.|++-|+..|||+||+.
T Consensus 358 -----dgGir---~~gdi~KAla~GA~~vm~G 381 (502)
T PRK07107 358 -----DGGIV---YDYHMTLALAMGADFIMLG 381 (502)
T ss_pred -----cCCCC---chhHHHHHHHcCCCeeeeC
Confidence 22222 2379999999999999996
No 95
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=71.65 E-value=22 Score=32.28 Aligned_cols=102 Identities=14% Similarity=0.141 Sum_probs=58.8
Q ss_pred HHHhc-HHHHHhh-cceeeec-CCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHH-HHHHH
Q 024709 17 DSLKN-LNEIILA-SDGAMVA-RGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEV-ADVSE 92 (264)
Q Consensus 17 ~~~~n-~~eI~~~-~Dgi~i~-rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~-~dv~~ 92 (264)
+++.+ ++-.++. +||+++. ----+..+..++-..+.+..++.++ -..||++.+ ...+-.|. .-...
T Consensus 19 ~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~-~~~~vi~gv---------~~~s~~~~i~~a~~ 88 (285)
T TIGR00674 19 AALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVN-GRVPVIAGT---------GSNATEEAISLTKF 88 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEeC---------CCccHHHHHHHHHH
Confidence 34433 4555665 9999983 2111233333444444455555443 236787643 23333343 34445
Q ss_pred HHHhccccccccccccCCCChHHHHHHHHHHHHHHH
Q 024709 93 LVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIE 128 (264)
Q Consensus 93 ~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E 128 (264)
|...|+|++|+..=.-...-+-+.++....|+..++
T Consensus 89 a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~ 124 (285)
T TIGR00674 89 AEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVD 124 (285)
T ss_pred HHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCC
Confidence 778899999998765554445677788888877654
No 96
>PRK06381 threonine synthase; Validated
Probab=71.45 E-value=62 Score=29.75 Aligned_cols=125 Identities=15% Similarity=0.135 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHh
Q 024709 50 SIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEK 129 (264)
Q Consensus 50 ~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~ 129 (264)
..=.-+...|+..|-|+.+. .|.......+...-..|++.+...+ .| -+++....+.+++ +.
T Consensus 73 N~g~alA~~aa~~G~~~~iv-----------vp~~~~~~~~~~l~~~GA~V~~~~~-----~~-~~~~~~a~~~~~~-~~ 134 (319)
T PRK06381 73 NYGASIAYFARLYGLKAVIF-----------IPRSYSNSRVKEMEKYGAEIIYVDG-----KY-EEAVERSRKFAKE-NG 134 (319)
T ss_pred HHHHHHHHHHHHcCCcEEEE-----------ECCCCCHHHHHHHHHcCCEEEEcCC-----CH-HHHHHHHHHHHHH-cC
Confidence 33345677899999999983 2222223344566779999888764 23 4566555555432 22
Q ss_pred hhhcccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHHhh----c------CCCCcEEE
Q 024709 130 WCREGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLK--ASALFVYTKTGQMASLLSR----S------RPDCPIFA 197 (264)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~--A~aIVv~T~sG~tA~~iSr----~------RP~~PIiA 197 (264)
++. ..+.... +....+....-+.++.++++ .+.||+.+-+|.+.--+++ + +|...|++
T Consensus 135 ~~~---------~~~~~~n-~~~~~~G~~t~a~Ei~~ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vig 204 (319)
T PRK06381 135 IYD---------ANPGSVN-SVVDIEAYSAIAYEIYEALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIG 204 (319)
T ss_pred cEe---------cCCCCCC-cchHhhhHHHHHHHHHHHhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEE
Confidence 111 1111001 10112334555667777775 5899999999998776665 3 68888999
Q ss_pred EcCCh
Q 024709 198 FAPMS 202 (264)
Q Consensus 198 vT~~~ 202 (264)
+.+..
T Consensus 205 Ve~~~ 209 (319)
T PRK06381 205 VSTSG 209 (319)
T ss_pred EeeCC
Confidence 98854
No 97
>PRK13655 phosphoenolpyruvate carboxylase; Provisional
Probab=71.40 E-value=6.9 Score=38.96 Aligned_cols=63 Identities=24% Similarity=0.242 Sum_probs=56.2
Q ss_pred cceEEEeccCHHHHhcHHHHHhh----------cceeeecCCCcccCCCC----CChHHHHHHHHHHHHHhCCCEEE
Q 024709 6 NIAVIAKIESIDSLKNLNEIILA----------SDGAMVARGDLGAQVPL----EQVPSIQEKIVQLCRQLNKPVIV 68 (264)
Q Consensus 6 ~~~iiakIE~~~~~~n~~eI~~~----------~Dgi~i~rgdL~~~~~~----~~v~~~qk~ii~~~~~~gkpv~~ 68 (264)
.+.||.=+||.+.+.|.++|++. .=-||+|+.|=+.+-|. -.+..+|.++.+.|+++|.++..
T Consensus 163 ~i~vvPLfEt~~dL~~a~~i~~~ll~~~~~~~~~qeVmlGySDSakd~G~las~w~l~~A~~~L~~~~~~~gv~i~~ 239 (494)
T PRK13655 163 EIEVIPLFEDADALLNADEILEEYLKAKKPHGKYLRVFLARSDPAMNYGHIASVLSVKYALSRLYELEEELGVEIYP 239 (494)
T ss_pred CcceECCcCCHHHHHhHHHHHHHHHhchhhcCCeeEEEEecccCccchhHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 67899999999999999999976 13699999999999997 57889999999999999998865
No 98
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=70.92 E-value=15 Score=33.98 Aligned_cols=102 Identities=17% Similarity=0.188 Sum_probs=69.0
Q ss_pred ceEEEeccCHHHHhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhh---hhhhhCCCC
Q 024709 7 IAVIAKIESIDSLKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLL---ESMIEYPIP 82 (264)
Q Consensus 7 ~~iiakIE~~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~l---eSM~~~~~p 82 (264)
+.|.--..+- .++.+.+-++. .+.||+.-.+ +|.++....-+++.+.|+.+|.|+=..-.-+ |-++.....
T Consensus 78 vPV~lHLDH~-~~~~i~~ai~~GftSVm~d~S~----l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~ 152 (293)
T PRK07315 78 VPVAIHLDHG-HYEDALECIEVGYTSIMFDGSH----LPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGE 152 (293)
T ss_pred CcEEEECCCC-CHHHHHHHHHcCCCEEEEcCCC----CCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccC
Confidence 3555566665 45566666666 8999998554 4678999999999999999999984432222 111111110
Q ss_pred ChHHHHHHHHHHHhccccccccccccCCCChH
Q 024709 83 TRAEVADVSELVRQQADALMLSGESAMGQFPD 114 (264)
Q Consensus 83 trae~~dv~~~v~~g~d~~~ls~eta~G~yP~ 114 (264)
.....++..++..|+|++-++--|.-|.||-
T Consensus 153 -~t~peea~~f~~tgvD~LAv~iG~vHG~y~t 183 (293)
T PRK07315 153 -LAPIEDAKAMVETGIDFLAAGIGNIHGPYPE 183 (293)
T ss_pred -CCCHHHHHHHHHcCCCEEeeccccccccCCC
Confidence 1233455677889999999998899999964
No 99
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=70.31 E-value=85 Score=28.46 Aligned_cols=156 Identities=17% Similarity=0.175 Sum_probs=87.1
Q ss_pred cHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHH-HhCCCEEEEhhhhhhhhhCCCCChHHH-HHHHHHHHhc
Q 024709 21 NLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCR-QLNKPVIVASQLLESMIEYPIPTRAEV-ADVSELVRQQ 97 (264)
Q Consensus 21 n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~-~~gkpv~~atq~leSM~~~~~ptrae~-~dv~~~v~~g 97 (264)
.++.+-.. .|.|-|.-|-.|. ...---.+.+..+ +.|.|++. ...+-.-+|.++ +++..+-..|
T Consensus 20 ~~~~l~~~~pd~isvT~~~~~~------~~~~t~~~a~~l~~~~g~~~i~-------Hlt~r~~n~~~l~~~L~~~~~~G 86 (272)
T TIGR00676 20 TVDRLSPLDPDFVSVTYGAGGS------TRDRTVRIVRRIKKETGIPTVP-------HLTCIGATREEIREILREYRELG 86 (272)
T ss_pred HHHHHhcCCCCEEEeccCCCCC------cHHHHHHHHHHHHHhcCCCeeE-------EeeecCCCHHHHHHHHHHHHHCC
Confidence 34555555 7888887666542 2222334555555 46999986 223345577776 7788889999
Q ss_pred ccccc-cccccc-------CCCChHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcC
Q 024709 98 ADALM-LSGESA-------MGQFPDKALAVLRSVSLRIEKWCREGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLK 169 (264)
Q Consensus 98 ~d~~~-ls~eta-------~G~yP~eav~~m~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~ 169 (264)
++-++ |.|+.. .|.|+ .+++.++.+-+.-.. +.-. .. ..+. ..+...+ .-.....+..+.+
T Consensus 87 i~nvL~l~GD~~~~~~~~~~~~f~-~a~~Li~~i~~~~~~-f~ig---~a-~~Pe-ghp~~~~----~~~~~~~L~~K~~ 155 (272)
T TIGR00676 87 IRHILALRGDPPKGEGTPTPGGFN-YASELVEFIRNEFGD-FDIG---VA-AYPE-KHPEAPN----LEEDIENLKRKVD 155 (272)
T ss_pred CCEEEEeCCCCCCCCCCCCCCCCC-CHHHHHHHHHHhcCC-eeEE---EE-eCCC-CCCCCCC----HHHHHHHHHHHHH
Confidence 99888 888766 46777 688777665221111 1000 00 0010 0000111 1122334566666
Q ss_pred CcEEEEEcCCchHHHHHhhc----C---CCCcEEEEcC
Q 024709 170 ASALFVYTKTGQMASLLSRS----R---PDCPIFAFAP 200 (264)
Q Consensus 170 A~aIVv~T~sG~tA~~iSr~----R---P~~PIiAvT~ 200 (264)
+.+=+++|.-...+..+.+| | -..||++-..
T Consensus 156 aGA~f~iTQ~~fd~~~~~~~~~~~~~~gi~~PIi~Gi~ 193 (272)
T TIGR00676 156 AGADYAITQLFFDNDDYYRFVDRCRAAGIDVPIIPGIM 193 (272)
T ss_pred cCCCeEeeccccCHHHHHHHHHHHHHcCCCCCEecccC
Confidence 65558889888877654433 2 2568887443
No 100
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=70.13 E-value=48 Score=29.98 Aligned_cols=120 Identities=17% Similarity=0.204 Sum_probs=70.8
Q ss_pred HHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhh
Q 024709 53 EKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCR 132 (264)
Q Consensus 53 k~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~ 132 (264)
.-+...|+..|.++++-. |......-+...-..|++.+...+ .| -++.+...++..+- .+
T Consensus 78 ~alA~~a~~~G~~~~ivv-----------p~~~~~~k~~~l~~~Ga~vi~~~~-----~~-~~~~~~a~~la~~~-~~-- 137 (304)
T cd01562 78 QGVAYAAKLLGIPATIVM-----------PETAPAAKVDATRAYGAEVVLYGE-----DF-DEAEAKARELAEEE-GL-- 137 (304)
T ss_pred HHHHHHHHHcCCCEEEEE-----------CCCCCHHHHHHHHHcCCEEEEeCC-----CH-HHHHHHHHHHHHhc-CC--
Confidence 456778999999999832 222222234567778999777664 23 34554444433221 11
Q ss_pred cccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcC-CcEEEEEcCCchHHHHHhh----cCCCCcEEEEcCCh
Q 024709 133 EGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLK-ASALFVYTKTGQMASLLSR----SRPDCPIFAFAPMS 202 (264)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~-A~aIVv~T~sG~tA~~iSr----~RP~~PIiAvT~~~ 202 (264)
++..+... +.. .......+.++..+++ .+.||+.+-||.|..-+++ +.|...|+++.+..
T Consensus 138 -------~~~~~~~n--~~~-~~g~~~~~~Ei~~q~~~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~ 202 (304)
T cd01562 138 -------TFIHPFDD--PDV-IAGQGTIGLEILEQVPDLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEG 202 (304)
T ss_pred -------EEeCCCCC--cch-hccHHHHHHHHHHhcCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 11111111 111 1223344667777775 6899999999998766554 47889999999853
No 101
>PRK08185 hypothetical protein; Provisional
Probab=69.24 E-value=16 Score=33.73 Aligned_cols=116 Identities=13% Similarity=0.228 Sum_probs=72.8
Q ss_pred cceEEEeccCHHHHhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhC--CCC
Q 024709 6 NIAVIAKIESIDSLKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEY--PIP 82 (264)
Q Consensus 6 ~~~iiakIE~~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~--~~p 82 (264)
.+.|..-..+-.-++.+..-++. .+.||+.-.+| |.++-...-+++++.|+.+|.+|=.-=..+..=... ...
T Consensus 68 ~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D~S~l----~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~ 143 (283)
T PRK08185 68 PVPFVIHLDHGATIEDVMRAIRCGFTSVMIDGSLL----PYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGV 143 (283)
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCCCC----CHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCccccccccc
Confidence 34555555555555555555555 67899986654 788999999999999999999983211111000000 000
Q ss_pred C---hHHHHHHHHHHHh-ccccccccccccCCCChH-----HHHHHHHHHHH
Q 024709 83 T---RAEVADVSELVRQ-QADALMLSGESAMGQFPD-----KALAVLRSVSL 125 (264)
Q Consensus 83 t---rae~~dv~~~v~~-g~d~~~ls~eta~G~yP~-----eav~~m~~i~~ 125 (264)
. .....+...++.. |+|++-.|--|+-|.||- --...+.+|..
T Consensus 144 ~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~ 195 (283)
T PRK08185 144 SEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINE 195 (283)
T ss_pred ccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHH
Confidence 0 1122344778877 999999999999999964 23444555533
No 102
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=69.05 E-value=26 Score=33.06 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=55.6
Q ss_pred ceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccC
Q 024709 30 DGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAM 109 (264)
Q Consensus 30 Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~ 109 (264)
-++|--+...|.-.|.. =|...+.+++. ...||++.. ..-+ -+|++.|+..|+|+|+++.-.+.
T Consensus 220 ~avmPl~~pIGsg~gv~-~p~~i~~~~e~---~~vpVivdA---------GIg~---~sda~~AmelGadgVL~nSaIa~ 283 (326)
T PRK11840 220 VAVMPLGAPIGSGLGIQ-NPYTIRLIVEG---ATVPVLVDA---------GVGT---ASDAAVAMELGCDGVLMNTAIAE 283 (326)
T ss_pred EEEeeccccccCCCCCC-CHHHHHHHHHc---CCCcEEEeC---------CCCC---HHHHHHHHHcCCCEEEEcceecc
Confidence 44555455556555654 45666666665 568999832 3333 25889999999999999999999
Q ss_pred CCChHHHHHHHHHHHH
Q 024709 110 GQFPDKALAVLRSVSL 125 (264)
Q Consensus 110 G~yP~eav~~m~~i~~ 125 (264)
.+.|+.=-+-|+.-++
T Consensus 284 a~dPv~Ma~A~~~av~ 299 (326)
T PRK11840 284 AKNPVLMARAMKLAVE 299 (326)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999876666655443
No 103
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=68.62 E-value=84 Score=28.67 Aligned_cols=123 Identities=9% Similarity=0.058 Sum_probs=70.8
Q ss_pred HHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhh
Q 024709 53 EKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCR 132 (264)
Q Consensus 53 k~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~ 132 (264)
.-+...|+++|.|+.+- .|..+........-..|++.+...++ +.| -++.+..+++.++-.
T Consensus 72 ~alA~~a~~~G~~~~i~-----------~p~~~~~~k~~~~~~~GA~v~~v~~~---~~~-~~~~~~a~~l~~~~~---- 132 (290)
T TIGR01138 72 IALAMIAALKGYRMKLL-----------MPDNMSQERKAAMRAYGAELILVTKE---EGM-EGARDLALELANRGE---- 132 (290)
T ss_pred HHHHHHHHHcCCeEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCCC---CCh-HHHHHHHHHHHHhCC----
Confidence 45667899999999983 23333333445566799998776542 122 233333333322111
Q ss_pred cccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHH----hhcCCCCcEEEEcCCh
Q 024709 133 EGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLK--ASALFVYTKTGQMASLL----SRSRPDCPIFAFAPMS 202 (264)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~--A~aIVv~T~sG~tA~~i----Sr~RP~~PIiAvT~~~ 202 (264)
.++..+... +.++.--...-+.++.++++ .+.||+.+-+|.++.-+ ..++|.+.|+++-|..
T Consensus 133 ------~~~~~~~~~--~~~~~~~~~t~~~Ei~~q~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~ 200 (290)
T TIGR01138 133 ------GKLLDQFNN--PDNPYAHYTSTGPEIWQQTGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEE 200 (290)
T ss_pred ------CCCCCccCC--cccHHHHhHhHHHHHHHHcCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 011122111 11111112345567777775 68999999999986544 4567999999999865
No 104
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=68.42 E-value=4.7 Score=37.24 Aligned_cols=34 Identities=24% Similarity=0.329 Sum_probs=29.9
Q ss_pred hcCCcEEEEEcCCchHHHHHhh----cCCCCcEEEEcC
Q 024709 167 KLKASALFVYTKTGQMASLLSR----SRPDCPIFAFAP 200 (264)
Q Consensus 167 ~l~A~aIVv~T~sG~tA~~iSr----~RP~~PIiAvT~ 200 (264)
+..++.+||-|.||+||-.+|- -.|.++.+.+||
T Consensus 174 ~~~~DGlIVSTPTGSTAYslSAGGPIv~P~~~~~~ltP 211 (287)
T PRK14077 174 EYFGDGVIVATPAGSTAYNMSANGPIIYPLSQVFILTP 211 (287)
T ss_pred EEEcCEEEEeCCCchhHhHhhcCCcccCCCCCeEEEEe
Confidence 4579999999999999999996 558899999887
No 105
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=68.39 E-value=11 Score=33.89 Aligned_cols=75 Identities=19% Similarity=0.328 Sum_probs=44.1
Q ss_pred HHhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHH-H
Q 024709 18 SLKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELV-R 95 (264)
Q Consensus 18 ~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v-~ 95 (264)
..+.+|.+.+. .+.+=|+.+||. . -.++++|.+.|||+|++|. .-|..|+.+..+.+ .
T Consensus 78 d~~s~d~l~~~~~~~~KIaS~dl~------n-----~~lL~~~A~tgkPvIlSTG---------~stl~EI~~Av~~~~~ 137 (241)
T PF03102_consen 78 DEESVDFLEELGVPAYKIASGDLT------N-----LPLLEYIAKTGKPVILSTG---------MSTLEEIERAVEVLRE 137 (241)
T ss_dssp SHHHHHHHHHHT-SEEEE-GGGTT------------HHHHHHHHTT-S-EEEE-T---------T--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEecccccc------C-----HHHHHHHHHhCCcEEEECC---------CCCHHHHHHHHHHHHh
Confidence 34444555555 899999999985 2 3467888899999999884 55788998888888 5
Q ss_pred hccccccccccccCCCChH
Q 024709 96 QQADALMLSGESAMGQFPD 114 (264)
Q Consensus 96 ~g~d~~~ls~eta~G~yP~ 114 (264)
.|.+=+.|=. -+..||.
T Consensus 138 ~~~~~l~llH--C~s~YP~ 154 (241)
T PF03102_consen 138 AGNEDLVLLH--CVSSYPT 154 (241)
T ss_dssp HCT--EEEEE--E-SSSS-
T ss_pred cCCCCEEEEe--cCCCCCC
Confidence 5655544422 2446774
No 106
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=68.08 E-value=4.9 Score=36.63 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=30.5
Q ss_pred hcCCcEEEEEcCCchHHHHHhh----cCCCCcEEEEcC
Q 024709 167 KLKASALFVYTKTGQMASLLSR----SRPDCPIFAFAP 200 (264)
Q Consensus 167 ~l~A~aIVv~T~sG~tA~~iSr----~RP~~PIiAvT~ 200 (264)
+..++.+|+-|.+|+||-.+|. ..|.++.+.+||
T Consensus 134 ~~~gDGlIVsTPtGSTAYslSAGGPIv~P~~~~~~itP 171 (259)
T PRK00561 134 KYRGSGLLIGPRTGSTALAKSAKGAVIFPRIDVIQIIE 171 (259)
T ss_pred EEecCEEEEeCchHHHHHHHhCCCCccCCCCCeEEEEe
Confidence 4578999999999999999986 568899999998
No 107
>PRK07334 threonine dehydratase; Provisional
Probab=67.80 E-value=57 Score=31.27 Aligned_cols=119 Identities=16% Similarity=0.145 Sum_probs=73.0
Q ss_pred HHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhhc
Q 024709 54 KIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCRE 133 (264)
Q Consensus 54 ~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~~ 133 (264)
-+...|+..|.|+.+- .|..+.-..+...-..|++.++.. ...-++++...++.++- .+
T Consensus 85 alA~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~v~~~~------~~~~~~~~~a~~l~~~~-~~--- 143 (403)
T PRK07334 85 GVAYHAQRLGIPATIV-----------MPRFTPTVKVERTRGFGAEVVLHG------ETLDEARAHARELAEEE-GL--- 143 (403)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEEC------cCHHHHHHHHHHHHHhc-CC---
Confidence 5667999999999983 222222233455677899998653 23556666555543321 11
Q ss_pred ccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcC-CcEEEEEcCCchHHHHHh----hcCCCCcEEEEcCCh
Q 024709 134 GKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLK-ASALFVYTKTGQMASLLS----RSRPDCPIFAFAPMS 202 (264)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~-A~aIVv~T~sG~tA~~iS----r~RP~~PIiAvT~~~ 202 (264)
++..+... +. ..+.-..-+.++.++++ .+.||+..-+|.+.--++ .++|...|+++-+..
T Consensus 144 ------~~~~~~~~--~~-~~~g~~t~~~Ei~~q~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~ 208 (403)
T PRK07334 144 ------TFVHPYDD--PA-VIAGQGTVALEMLEDAPDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTEL 208 (403)
T ss_pred ------EecCCCCC--HH-HHHhHHHHHHHHHhcCCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 11122111 11 22334445666777764 589999999999766555 458999999999865
No 108
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=67.66 E-value=29 Score=30.09 Aligned_cols=83 Identities=19% Similarity=0.234 Sum_probs=46.5
Q ss_pred cceEEEeccCHHHHhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHH-hCCCEEEEhhhhhhhhhCCCCC
Q 024709 6 NIAVIAKIESIDSLKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQ-LNKPVIVASQLLESMIEYPIPT 83 (264)
Q Consensus 6 ~~~iiakIE~~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~-~gkpv~~atq~leSM~~~~~pt 83 (264)
.+.++.++.+. +.+.++.+. +|+|.+....-+....... ..+...++++++ .++|++.+.- .-+
T Consensus 102 ~i~~i~~v~~~---~~~~~~~~~gad~i~~~~~~~~G~~~~~~--~~~~~~i~~i~~~~~~Pvi~~GG---------I~~ 167 (236)
T cd04730 102 GIKVIPTVTSV---EEARKAEAAGADALVAQGAEAGGHRGTFD--IGTFALVPEVRDAVDIPVIAAGG---------IAD 167 (236)
T ss_pred CCEEEEeCCCH---HHHHHHHHcCCCEEEEeCcCCCCCCCccc--cCHHHHHHHHHHHhCCCEEEECC---------CCC
Confidence 35677777665 334444444 7988774322221111111 112344444443 3789998542 222
Q ss_pred hHHHHHHHHHHHhccccccccc
Q 024709 84 RAEVADVSELVRQQADALMLSG 105 (264)
Q Consensus 84 rae~~dv~~~v~~g~d~~~ls~ 105 (264)
..|+..++..|+|+|++++
T Consensus 168 ---~~~v~~~l~~GadgV~vgS 186 (236)
T cd04730 168 ---GRGIAAALALGADGVQMGT 186 (236)
T ss_pred ---HHHHHHHHHcCCcEEEEch
Confidence 3566788889999999973
No 109
>PRK09224 threonine dehydratase; Reviewed
Probab=67.64 E-value=66 Score=32.00 Aligned_cols=121 Identities=15% Similarity=0.177 Sum_probs=70.5
Q ss_pred HHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhh
Q 024709 53 EKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCR 132 (264)
Q Consensus 53 k~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~ 132 (264)
.-+...|++.|.|+.+- .|..+...-+...-..|++.++.. ...-++.+...++.++ +.+
T Consensus 81 ~avA~aa~~lGi~~~Iv-----------mP~~tp~~K~~~~r~~GA~Vi~~g------~~~~~a~~~a~~l~~~-~g~-- 140 (504)
T PRK09224 81 QGVALSAARLGIKAVIV-----------MPVTTPDIKVDAVRAFGGEVVLHG------DSFDEAYAHAIELAEE-EGL-- 140 (504)
T ss_pred HHHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHhCCCEEEEEC------CCHHHHHHHHHHHHHh-cCC--
Confidence 35677899999998872 222222223345557899876653 2345666655554332 111
Q ss_pred cccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcC--CcEEEEEcCCchHHHH----HhhcCCCCcEEEEcCChh
Q 024709 133 EGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLK--ASALFVYTKTGQMASL----LSRSRPDCPIFAFAPMSS 203 (264)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~--A~aIVv~T~sG~tA~~----iSr~RP~~PIiAvT~~~~ 203 (264)
++.++... + .....-..-+.++.++++ .+.||+..-+|.+.-- +..++|...|+++-+...
T Consensus 141 -------~~v~~f~~--~-~~i~G~gTi~~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~ 207 (504)
T PRK09224 141 -------TFIHPFDD--P-DVIAGQGTIAMEILQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDS 207 (504)
T ss_pred -------EEeCCCCC--c-HHHHhHHHHHHHHHHhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 11111111 1 112223344567777774 5899999999987554 456789999999987543
No 110
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=67.54 E-value=4.6 Score=37.43 Aligned_cols=34 Identities=35% Similarity=0.395 Sum_probs=29.9
Q ss_pred hcCCcEEEEEcCCchHHHHHhh----cCCCCcEEEEcC
Q 024709 167 KLKASALFVYTKTGQMASLLSR----SRPDCPIFAFAP 200 (264)
Q Consensus 167 ~l~A~aIVv~T~sG~tA~~iSr----~RP~~PIiAvT~ 200 (264)
+..++.+|+-|.||+||-.+|. -.|.++.+.+||
T Consensus 173 ~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~ltP 210 (292)
T PRK01911 173 SYWADGLIVATPTGSTGYSLSCGGPIIVPDAKSFVITP 210 (292)
T ss_pred EEeeceeEECCCCcHHHHHhhCCCcccCCCCCEEEEEe
Confidence 4579999999999999999996 567888999887
No 111
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=67.45 E-value=8.1 Score=30.26 Aligned_cols=50 Identities=12% Similarity=0.208 Sum_probs=36.5
Q ss_pred CcEEEEEcCCchHHHHH-----hhcCCCCcEEEEcCChhhhhhcccccccEEEEecC
Q 024709 170 ASALFVYTKTGQMASLL-----SRSRPDCPIFAFAPMSSVRRRLNLQWGLVPFCLNF 221 (264)
Q Consensus 170 A~aIVv~T~sG~tA~~i-----Sr~RP~~PIiAvT~~~~~aR~L~L~~GV~P~~~~~ 221 (264)
-+.+|++|.||.|...+ +|.| .+|++++|.+...+ ++.-.||..-+.++.
T Consensus 44 ~dl~I~iS~SG~t~e~i~~~~~a~~~-g~~iI~IT~~~~l~-~~~~~~~~~~~~~p~ 98 (119)
T cd05017 44 KTLVIAVSYSGNTEETLSAVEQAKER-GAKIVAITSGGKLL-EMAREHGVPVIIIPK 98 (119)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHC-CCEEEEEeCCchHH-HHHHHcCCcEEECCC
Confidence 46899999999976544 3444 68999999877644 466667777666654
No 112
>PRK06815 hypothetical protein; Provisional
Probab=67.38 E-value=60 Score=29.98 Aligned_cols=121 Identities=16% Similarity=0.191 Sum_probs=70.9
Q ss_pred HHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhh
Q 024709 53 EKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCR 132 (264)
Q Consensus 53 k~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~ 132 (264)
.-+...|++.|.|+.+-. |..+.-.-+...-..|++.+...++ ..++.+...++..+- .
T Consensus 81 ~alA~~a~~~G~~~~i~~-----------p~~~~~~k~~~~~~~GA~V~~~~~~------~~~~~~~a~~~~~~~-~--- 139 (317)
T PRK06815 81 QGVALAAKLAGIPVTVYA-----------PEQASAIKLDAIRALGAEVRLYGGD------ALNAELAARRAAEQQ-G--- 139 (317)
T ss_pred HHHHHHHHHhCCCEEEEE-----------CCCCCHHHHHHHHHCCCEEEEECCC------HHHHHHHHHHHHHhc-C---
Confidence 346778999999999832 2222223344556789998887653 344544444432221 1
Q ss_pred cccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcC-CcEEEEEcCCchHHHHH----hhcCCCCcEEEEcCChh
Q 024709 133 EGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLK-ASALFVYTKTGQMASLL----SRSRPDCPIFAFAPMSS 203 (264)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~-A~aIVv~T~sG~tA~~i----Sr~RP~~PIiAvT~~~~ 203 (264)
.++..+... +. ..+.....+.++.++++ .+.||+..-+|.+.--+ ..+.|...|+++-+...
T Consensus 140 ------~~~~~~~~~--~~-~~~g~~t~a~Ei~~q~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~ 206 (317)
T PRK06815 140 ------KVYISPYND--PQ-VIAGQGTIGMELVEQQPDLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPANS 206 (317)
T ss_pred ------CEEecCCCC--hh-hhcchhHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCCC
Confidence 011111111 11 11223445667777764 68999999999876544 45669999999998653
No 113
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=67.20 E-value=5.5 Score=36.39 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=31.3
Q ss_pred HhcCCcEEEEEcCCchHHHHHhh----cCCCCcEEEEcCCh
Q 024709 166 NKLKASALFVYTKTGQMASLLSR----SRPDCPIFAFAPMS 202 (264)
Q Consensus 166 ~~l~A~aIVv~T~sG~tA~~iSr----~RP~~PIiAvT~~~ 202 (264)
.+..++.+|+-|.+|+||..+|. ..|.++.+.+||=.
T Consensus 145 ~~~~~DGlIVsTPtGSTAY~lSAGGPIv~P~~~~~~itPI~ 185 (264)
T PRK03501 145 ETFRGDGMVVSTPTGSTAYNKSVRGAVVDPLIPCFQVSELA 185 (264)
T ss_pred EEEecCEEEEeCCCchHHHHhhcCCcccCCCCCeEEEEecc
Confidence 34579999999999999999996 56889999998844
No 114
>PLN02970 serine racemase
Probab=66.83 E-value=80 Score=29.34 Aligned_cols=119 Identities=14% Similarity=0.142 Sum_probs=69.6
Q ss_pred HHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhhc
Q 024709 54 KIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCRE 133 (264)
Q Consensus 54 ~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~~ 133 (264)
-+...|+.+|.|+.+- .|..+....+.+.-..|++.+...+ . ..++.+..+++.++ ..+
T Consensus 89 alA~~a~~~G~~~~iv-----------vp~~~~~~k~~~~~~~GA~Vi~~~~-----~-~~~~~~~a~~la~~-~g~--- 147 (328)
T PLN02970 89 ALALAAKLRGIPAYIV-----------VPKNAPACKVDAVIRYGGIITWCEP-----T-VESREAVAARVQQE-TGA--- 147 (328)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHhcCCEEEEeCC-----C-HHHHHHHHHHHHHh-cCC---
Confidence 4567899999999983 2222222233456678999876542 2 23444444444322 111
Q ss_pred ccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcC-CcEEEEEcCCchHHHHHhh----cCCCCcEEEEcCCh
Q 024709 134 GKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLK-ASALFVYTKTGQMASLLSR----SRPDCPIFAFAPMS 202 (264)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~-A~aIVv~T~sG~tA~~iSr----~RP~~PIiAvT~~~ 202 (264)
++..+... +. ..+....-+.++.++++ .+.||+..-+|.+..-+++ +.|...|+++-+..
T Consensus 148 ------~~~~~~~n--~~-~~~g~~t~g~Ei~~ql~~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~ 212 (328)
T PLN02970 148 ------VLIHPYND--GR-VISGQGTIALEFLEQVPELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKG 212 (328)
T ss_pred ------EEeCCCCC--cc-hhhehHHHHHHHHHhccCCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECC
Confidence 11122111 11 11222334566777664 6899999999998776664 48999999998854
No 115
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=66.58 E-value=40 Score=31.20 Aligned_cols=101 Identities=21% Similarity=0.220 Sum_probs=57.8
Q ss_pred HHHhc-HHHHHhh-cceeeec-CCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHH-HHHHH
Q 024709 17 DSLKN-LNEIILA-SDGAMVA-RGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEV-ADVSE 92 (264)
Q Consensus 17 ~~~~n-~~eI~~~-~Dgi~i~-rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~-~dv~~ 92 (264)
++++. ++..++. +|||++. ---=...+..++-..+.+..++.+ .-..||++-+ ...+-.|. .-...
T Consensus 29 ~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~-~grvpvi~Gv---------~~~~t~~ai~~a~~ 98 (309)
T cd00952 29 DETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETV-AGRVPVFVGA---------TTLNTRDTIARTRA 98 (309)
T ss_pred HHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHh-CCCCCEEEEe---------ccCCHHHHHHHHHH
Confidence 34433 4555555 8999983 111112233355555555555555 3447888743 22222343 33445
Q ss_pred HHHhccccccccccccCCCChHHHHHHHHHHHHHH
Q 024709 93 LVRQQADALMLSGESAMGQFPDKALAVLRSVSLRI 127 (264)
Q Consensus 93 ~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~ 127 (264)
|-..|+|++|+..=--...-+-+.++.-+.|+..+
T Consensus 99 A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~ 133 (309)
T cd00952 99 LLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAV 133 (309)
T ss_pred HHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhC
Confidence 67789999999865433333467777788887766
No 116
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=66.23 E-value=29 Score=32.64 Aligned_cols=110 Identities=18% Similarity=0.241 Sum_probs=61.9
Q ss_pred cceEEEeccCHHHHhcHHHHHhh-----cceeeecCCCccc----------CC----CCCChHHHHHHHHHHHHHh--CC
Q 024709 6 NIAVIAKIESIDSLKNLNEIILA-----SDGAMVARGDLGA----------QV----PLEQVPSIQEKIVQLCRQL--NK 64 (264)
Q Consensus 6 ~~~iiakIE~~~~~~n~~eI~~~-----~Dgi~i~rgdL~~----------~~----~~~~v~~~qk~ii~~~~~~--gk 64 (264)
++.|++|+---...+++.++++. +|||.+.=+-... .. |.+.-+...+.+-+..+.. +.
T Consensus 211 ~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~i 290 (344)
T PRK05286 211 YVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRL 290 (344)
T ss_pred CCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCC
Confidence 47899999743222345555543 7999885321110 00 1122233444444444444 57
Q ss_pred CEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhh
Q 024709 65 PVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCR 132 (264)
Q Consensus 65 pv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~ 132 (264)
|++....+. ...|+...+..|||+|++..-...+. | .+..+|+++-++|+.
T Consensus 291 pIig~GGI~------------s~eda~e~l~aGAd~V~v~~~~~~~g-P----~~~~~i~~~L~~~l~ 341 (344)
T PRK05286 291 PIIGVGGID------------SAEDAYEKIRAGASLVQIYSGLIYEG-P----GLVKEIVRGLARLLR 341 (344)
T ss_pred CEEEECCCC------------CHHHHHHHHHcCCCHHHHHHHHHHhC-c----hHHHHHHHHHHHHHH
Confidence 888765433 23577888899999999985543321 2 245566666666654
No 117
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=66.16 E-value=1.1e+02 Score=28.33 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhc-----CCcEEEEEcCCchHHHHHhh----cCCCCcEEEEcCCh
Q 024709 155 GEICNGAAKIANKL-----KASALFVYTKTGQMASLLSR----SRPDCPIFAFAPMS 202 (264)
Q Consensus 155 ~aIA~aAv~lA~~l-----~A~aIVv~T~sG~tA~~iSr----~RP~~PIiAvT~~~ 202 (264)
......+.++.+++ +.+.||+.+-||.|+--+++ ..|++.|+++-+..
T Consensus 165 ~g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~ 221 (329)
T PRK14045 165 LGYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGS 221 (329)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 33444445777665 36899999999999876654 45999999999865
No 118
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=65.91 E-value=12 Score=32.91 Aligned_cols=56 Identities=29% Similarity=0.407 Sum_probs=35.7
Q ss_pred HHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHH-hCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccc
Q 024709 24 EIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQ-LNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADAL 101 (264)
Q Consensus 24 eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~-~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~ 101 (264)
.+.+. .|+|||| |-.|+ ..++ -.++++++++ ..+|+++ .|... +.+..|+|++
T Consensus 19 ~v~~~gtDaI~VG-GS~gv--t~~~----~~~~v~~ik~~~~lPvil------------fp~~~------~~i~~~aD~~ 73 (205)
T TIGR01769 19 NAKDAGTDAIMVG-GSLGI--VESN----LDQTVKKIKKITNLPVIL------------FPGNV------NGLSRYADAV 73 (205)
T ss_pred HHHhcCCCEEEEc-CcCCC--CHHH----HHHHHHHHHhhcCCCEEE------------ECCCc------cccCcCCCEE
Confidence 33444 7999998 32333 2233 3345566666 5799997 56664 5667899998
Q ss_pred ccc
Q 024709 102 MLS 104 (264)
Q Consensus 102 ~ls 104 (264)
+.-
T Consensus 74 ~~~ 76 (205)
T TIGR01769 74 FFM 76 (205)
T ss_pred EEE
Confidence 764
No 119
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=65.73 E-value=6.7 Score=36.59 Aligned_cols=37 Identities=24% Similarity=0.374 Sum_probs=31.3
Q ss_pred HhcCCcEEEEEcCCchHHHHHhh----cCCCCcEEEEcCCh
Q 024709 166 NKLKASALFVYTKTGQMASLLSR----SRPDCPIFAFAPMS 202 (264)
Q Consensus 166 ~~l~A~aIVv~T~sG~tA~~iSr----~RP~~PIiAvT~~~ 202 (264)
.+..++.+|+-|.||+||..+|- -.|.++.+.+||-.
T Consensus 181 ~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~itPI~ 221 (306)
T PRK03372 181 SSFGCDGVLVSTPTGSTAYAFSAGGPVVWPDLEALLVVPLN 221 (306)
T ss_pred EEEecCEEEEeCCCchHHHHhhcCCcccCCCCCeEEEEecc
Confidence 34578999999999999999996 56788999999833
No 120
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=65.67 E-value=96 Score=28.18 Aligned_cols=125 Identities=14% Similarity=0.143 Sum_probs=70.1
Q ss_pred HHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCCh-HHHHHHHHHHHHHHHhhh
Q 024709 53 EKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFP-DKALAVLRSVSLRIEKWC 131 (264)
Q Consensus 53 k~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP-~eav~~m~~i~~~~E~~~ 131 (264)
.-+...|+++|.|+.+- .|....-.-....-..|++.+...+ .|. .++++..+++.++-.
T Consensus 70 ~alA~~a~~~Gl~~~i~-----------vp~~~~~~k~~~~~~~GA~v~~~~~-----~~~~~~~~~~a~~~~~~~~--- 130 (298)
T TIGR01139 70 IALAMVAAARGYKLILT-----------MPETMSIERRKLLKAYGAELVLTPG-----AEGMKGAIAKAEEIAASTP--- 130 (298)
T ss_pred HHHHHHHHHcCCeEEEE-----------eCCccCHHHHHHHHHcCCEEEEECC-----CCCHHHHHHHHHHHHHhCC---
Confidence 34567899999999983 2322222223455678999886642 343 345554444322100
Q ss_pred hcccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHH----hhcCCCCcEEEEcCChh
Q 024709 132 REGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLK--ASALFVYTKTGQMASLL----SRSRPDCPIFAFAPMSS 203 (264)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~--A~aIVv~T~sG~tA~~i----Sr~RP~~PIiAvT~~~~ 203 (264)
..| ++..+. .. +.++..-...-+.++.++++ .+.||+.+-+|.++--+ ..++|...|+++-+...
T Consensus 131 ---~~~--~~~~~~-~n-~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~ 201 (298)
T TIGR01139 131 ---NSY--FMLQQF-EN-PANPEIHRKTTGPEIWRDTDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAES 201 (298)
T ss_pred ---CcE--Eccccc-CC-cccHHHHHHHHHHHHHHHhCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCCC
Confidence 001 111121 11 11111112334456667764 68999999999876544 45679999999998653
No 121
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=65.47 E-value=5.8 Score=36.77 Aligned_cols=37 Identities=30% Similarity=0.359 Sum_probs=32.0
Q ss_pred HhcCCcEEEEEcCCchHHHHHhh----cCCCCcEEEEcCCh
Q 024709 166 NKLKASALFVYTKTGQMASLLSR----SRPDCPIFAFAPMS 202 (264)
Q Consensus 166 ~~l~A~aIVv~T~sG~tA~~iSr----~RP~~PIiAvT~~~ 202 (264)
.+..++.+|+-|.+|+||..+|. ..|.++.+.+||=.
T Consensus 171 ~~~~~DGlivsTptGSTAY~lSAGGpIv~p~~~~~~itPI~ 211 (295)
T PRK01231 171 CSQRSDGLIVSTPTGSTAYALSGGGPIMHPKLDAIVLVPMF 211 (295)
T ss_pred EEEEcceEEEeCCCCchhhhhhcCCceecCCCCeEEEEecC
Confidence 35679999999999999999996 67899999999844
No 122
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=65.29 E-value=5.1 Score=36.73 Aligned_cols=35 Identities=23% Similarity=0.212 Sum_probs=30.2
Q ss_pred hcCCcEEEEEcCCchHHHHHhh----cCCCCcEEEEcCC
Q 024709 167 KLKASALFVYTKTGQMASLLSR----SRPDCPIFAFAPM 201 (264)
Q Consensus 167 ~l~A~aIVv~T~sG~tA~~iSr----~RP~~PIiAvT~~ 201 (264)
+..++.+|+-|.||+||..+|. ..|.++.+.+||-
T Consensus 155 ~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~ltPI 193 (271)
T PRK01185 155 TFKADGVIVATPTGSTSYSSSAGGPILLPNLEGMVISYI 193 (271)
T ss_pred EEEeeEEEEeCCCchHHHHhhCCCceeCCCCCeEEEEec
Confidence 4579999999999999999996 5578888888874
No 123
>PRK06801 hypothetical protein; Provisional
Probab=65.27 E-value=21 Score=33.04 Aligned_cols=105 Identities=13% Similarity=0.156 Sum_probs=66.6
Q ss_pred cceEEEeccCHHHHhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCC--CC
Q 024709 6 NIAVIAKIESIDSLKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYP--IP 82 (264)
Q Consensus 6 ~~~iiakIE~~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~--~p 82 (264)
.+.|.....+-.-++.+++-++. .+.||+.-. .+|.++-...-+++.+.|+.+|.+|=..=..+-.-...+ .+
T Consensus 74 ~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D~S----~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~ 149 (286)
T PRK06801 74 DIPVVLNLDHGLHFEAVVRALRLGFSSVMFDGS----TLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGE 149 (286)
T ss_pred CCCEEEECCCCCCHHHHHHHHHhCCcEEEEcCC----CCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCC
Confidence 34455555554445556666666 899999533 457788888899999999999998733221121110000 00
Q ss_pred ----ChHHHHHHHHHH-HhccccccccccccCCCChH
Q 024709 83 ----TRAEVADVSELV-RQQADALMLSGESAMGQFPD 114 (264)
Q Consensus 83 ----trae~~dv~~~v-~~g~d~~~ls~eta~G~yP~ 114 (264)
......+...++ .-|+|++-.+--|+.|+|+-
T Consensus 150 ~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~ 186 (286)
T PRK06801 150 ADSAKFTDPQLARDFVDRTGIDALAVAIGNAHGKYKG 186 (286)
T ss_pred cccccCCCHHHHHHHHHHHCcCEEEeccCCCCCCCCC
Confidence 011224456677 68999999999999999964
No 124
>PRK10717 cysteine synthase A; Provisional
Probab=65.23 E-value=1.1e+02 Score=28.28 Aligned_cols=130 Identities=9% Similarity=0.091 Sum_probs=70.7
Q ss_pred HHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhhc
Q 024709 54 KIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCRE 133 (264)
Q Consensus 54 ~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~~ 133 (264)
-+...|+++|.|+.+- .|....-.-+...-..|++.+...+.. ...|-..++...++.++.+....
T Consensus 78 alA~~a~~~G~~~~vv-----------~p~~~~~~k~~~~~~~GA~V~~~~~~~--~~~~~~~~~~a~~~a~~~~~~~~- 143 (330)
T PRK10717 78 GLALVAAARGYKTVIV-----------MPETQSQEKKDLLRALGAELVLVPAAP--YANPNNYVKGAGRLAEELVASEP- 143 (330)
T ss_pred HHHHHHHHcCCcEEEE-----------eCCCCCHHHHHHHHHcCCEEEEeCCcc--cccccchHHHHHHHHHHHHhhCC-
Confidence 4567899999999983 222222223456667899987765320 01111233333344333221000
Q ss_pred ccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHHh----hcCCCCcEEEEcCCh
Q 024709 134 GKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLK--ASALFVYTKTGQMASLLS----RSRPDCPIFAFAPMS 202 (264)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~--A~aIVv~T~sG~tA~~iS----r~RP~~PIiAvT~~~ 202 (264)
. ..++..+... +.....-...-+.++.++++ .+.||+..-+|.+..-++ .++|++.|+++-+..
T Consensus 144 -~--~~~~~~~~~~--~~~~~~g~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~ 213 (330)
T PRK10717 144 -N--GAIWANQFDN--PANREAHYETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTG 213 (330)
T ss_pred -C--CeEecCCCCC--hhhHHHHHHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 0 1111122110 11111113344667777775 689999999999766544 567999999998854
No 125
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=65.15 E-value=38 Score=33.61 Aligned_cols=82 Identities=21% Similarity=0.219 Sum_probs=52.6
Q ss_pred cceEEEe-ccCHHHHhcHHHHHhh-cceeeec---------CCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhh
Q 024709 6 NIAVIAK-IESIDSLKNLNEIILA-SDGAMVA---------RGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLE 74 (264)
Q Consensus 6 ~~~iiak-IE~~~~~~n~~eI~~~-~Dgi~i~---------rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~le 74 (264)
++.||+- +-|.++..++.+ . +|+|=|| |+-.++-.| -....-...+.++++|+|+|.-.
T Consensus 266 ~~~vi~g~~~t~~~~~~l~~---~G~d~i~vg~g~Gs~~ttr~~~~~g~~---~~~a~~~~~~~~~~~~~~viadG---- 335 (475)
T TIGR01303 266 GVPIVAGNVVSAEGVRDLLE---AGANIIKVGVGPGAMCTTRMMTGVGRP---QFSAVLECAAEARKLGGHVWADG---- 335 (475)
T ss_pred CCeEEEeccCCHHHHHHHHH---hCCCEEEECCcCCccccCccccCCCCc---hHHHHHHHHHHHHHcCCcEEEeC----
Confidence 4667775 777777766654 4 7888643 322222222 23334456666688899988622
Q ss_pred hhhhCCCCChHHHHHHHHHHHhccccccccc
Q 024709 75 SMIEYPIPTRAEVADVSELVRQQADALMLSG 105 (264)
Q Consensus 75 SM~~~~~ptrae~~dv~~~v~~g~d~~~ls~ 105 (264)
...+ -.|++.|+..|+|+||+++
T Consensus 336 -----gi~~---~~di~kala~GA~~vm~g~ 358 (475)
T TIGR01303 336 -----GVRH---PRDVALALAAGASNVMVGS 358 (475)
T ss_pred -----CCCC---HHHHHHHHHcCCCEEeech
Confidence 2222 2689999999999999974
No 126
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=65.13 E-value=71 Score=31.91 Aligned_cols=99 Identities=18% Similarity=0.211 Sum_probs=64.0
Q ss_pred cceEEEeccC-HHHHhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHh--CCCEEEEhhhhhhhhhCCC
Q 024709 6 NIAVIAKIES-IDSLKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQL--NKPVIVASQLLESMIEYPI 81 (264)
Q Consensus 6 ~~~iiakIE~-~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~--gkpv~~atq~leSM~~~~~ 81 (264)
+..+=|-|=+ .++.++.+++++. +|.|.+...+ ---..|-..++..++. +.+++..+ .
T Consensus 236 ~l~vgaavg~~~~~~~r~~~l~~ag~d~i~iD~~~--------g~~~~~~~~i~~ik~~~p~~~vi~g~----------v 297 (505)
T PLN02274 236 KLLVGAAIGTRESDKERLEHLVKAGVDVVVLDSSQ--------GDSIYQLEMIKYIKKTYPELDVIGGN----------V 297 (505)
T ss_pred CEEEEEEEcCCccHHHHHHHHHHcCCCEEEEeCCC--------CCcHHHHHHHHHHHHhCCCCcEEEec----------C
Confidence 4555555654 6789999999999 9999996532 2334455667777775 46665432 3
Q ss_pred CChHHHHHHHHHHHhccccccccc---------c-ccCCCChHHHHHHHHHHHH
Q 024709 82 PTRAEVADVSELVRQQADALMLSG---------E-SAMGQFPDKALAVLRSVSL 125 (264)
Q Consensus 82 ptrae~~dv~~~v~~g~d~~~ls~---------e-ta~G~yP~eav~~m~~i~~ 125 (264)
.|.. |..+++..|+|++..+. + |..|.-+..++..+.++++
T Consensus 298 ~t~e---~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~ 348 (505)
T PLN02274 298 VTMY---QAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQATAVYKVASIAA 348 (505)
T ss_pred CCHH---HHHHHHHcCcCEEEECCCCCccccCccccccCCCcccHHHHHHHHHH
Confidence 3333 34688889999997742 2 3455555566666666554
No 127
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=65.06 E-value=5.7 Score=36.89 Aligned_cols=37 Identities=22% Similarity=0.371 Sum_probs=32.1
Q ss_pred HhcCCcEEEEEcCCchHHHHHhh----cCCCCcEEEEcCCh
Q 024709 166 NKLKASALFVYTKTGQMASLLSR----SRPDCPIFAFAPMS 202 (264)
Q Consensus 166 ~~l~A~aIVv~T~sG~tA~~iSr----~RP~~PIiAvT~~~ 202 (264)
.+..++.+|+-|.+|+||..+|- ..|.++.+.+||=.
T Consensus 175 ~~~~gDGlIVsTPtGSTAYslSAGGPIv~P~~~~~~vtPi~ 215 (305)
T PRK02645 175 DQYQGDGLIVSTPTGSTAYTMAAGGPILHPGIDAIIVTPIC 215 (305)
T ss_pred EEEecCEEEEecCCChhhhhhhcCCcccCCCCCeEEEEecC
Confidence 34579999999999999999996 67899999999853
No 128
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=64.80 E-value=27 Score=32.85 Aligned_cols=82 Identities=22% Similarity=0.326 Sum_probs=49.7
Q ss_pred ceEEEe-ccCHHHHhcHHHHHhh-cceeeecCCCcccC-----CCCCChHHHHHHHHHHHHH-hCCCEEEEhhhhhhhhh
Q 024709 7 IAVIAK-IESIDSLKNLNEIILA-SDGAMVARGDLGAQ-----VPLEQVPSIQEKIVQLCRQ-LNKPVIVASQLLESMIE 78 (264)
Q Consensus 7 ~~iiak-IE~~~~~~n~~eI~~~-~Dgi~i~rgdL~~~-----~~~~~v~~~qk~ii~~~~~-~gkpv~~atq~leSM~~ 78 (264)
+.||++ +.|.+....+.+ . +|+|.++=|-=+.. .+. .++.+|-..+..|.+ ..+|+|.-..
T Consensus 138 ~~vi~GnV~t~e~a~~l~~---aGad~I~V~~G~G~~~~tr~~~g~-g~~~~~l~ai~ev~~a~~~pVIadGG------- 206 (321)
T TIGR01306 138 SFVIAGNVGTPEAVRELEN---AGADATKVGIGPGKVCITKIKTGF-GTGGWQLAALRWCAKAARKPIIADGG------- 206 (321)
T ss_pred CEEEEecCCCHHHHHHHHH---cCcCEEEECCCCCccccceeeecc-CCCchHHHHHHHHHHhcCCeEEEECC-------
Confidence 457787 888877666554 4 89999873322211 111 112233334444444 4678876332
Q ss_pred CCCCChHHHHHHHHHHHhcccccccc
Q 024709 79 YPIPTRAEVADVSELVRQQADALMLS 104 (264)
Q Consensus 79 ~~~ptrae~~dv~~~v~~g~d~~~ls 104 (264)
.. --.|++.|+..|||+||+.
T Consensus 207 --Ir---~~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 207 --IR---THGDIAKSIRFGASMVMIG 227 (321)
T ss_pred --cC---cHHHHHHHHHcCCCEEeec
Confidence 22 2369999999999999997
No 129
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=64.56 E-value=48 Score=30.91 Aligned_cols=108 Identities=17% Similarity=0.257 Sum_probs=65.3
Q ss_pred cceEEEeccCHHHHhcHHHHHhh-----cceeeecCCCcccCC--------------CCCChHHHHHHHHHHHHHhCCCE
Q 024709 6 NIAVIAKIESIDSLKNLNEIILA-----SDGAMVARGDLGAQV--------------PLEQVPSIQEKIVQLCRQLNKPV 66 (264)
Q Consensus 6 ~~~iiakIE~~~~~~n~~eI~~~-----~Dgi~i~rgdL~~~~--------------~~~~v~~~qk~ii~~~~~~gkpv 66 (264)
++.|++|+- + .+.++.++++. +|||.+.-.=.+..+ |....+...+.+-+.++....|+
T Consensus 163 ~iPv~vKl~-p-~~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ipI 240 (325)
T cd04739 163 TIPVAVKLS-P-FFSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKASL 240 (325)
T ss_pred CCCEEEEcC-C-CccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCCE
Confidence 578999984 2 24466666654 788866321111111 11233445555555555667898
Q ss_pred EEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccC-CCChHHHHHHHHHHHHHHHhhhhc
Q 024709 67 IVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAM-GQFPDKALAVLRSVSLRIEKWCRE 133 (264)
Q Consensus 67 ~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~-G~yP~eav~~m~~i~~~~E~~~~~ 133 (264)
+-...+. ...|+..+++.|||+|++...--. | | ..+.+|+++-+.|+.+
T Consensus 241 ig~GGI~------------s~~Da~e~l~aGA~~Vqv~ta~~~~g--p----~~~~~i~~~L~~~l~~ 290 (325)
T cd04739 241 AASGGVH------------DAEDVVKYLLAGADVVMTTSALLRHG--P----DYIGTLLAGLEAWMEE 290 (325)
T ss_pred EEECCCC------------CHHHHHHHHHcCCCeeEEehhhhhcC--c----hHHHHHHHHHHHHHHH
Confidence 8755433 235789999999999999844332 2 3 3567777777777654
No 130
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=64.54 E-value=30 Score=31.37 Aligned_cols=102 Identities=18% Similarity=0.167 Sum_probs=58.4
Q ss_pred HHH-hcHHHHHhh-cceeeec-CCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHH-HHHHH
Q 024709 17 DSL-KNLNEIILA-SDGAMVA-RGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEV-ADVSE 92 (264)
Q Consensus 17 ~~~-~n~~eI~~~-~Dgi~i~-rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~-~dv~~ 92 (264)
+++ ++++-.++. +||++++ ..-=+..+..++-..+.+.+++.++ -..|+++.+ ...+-.|. .-.-.
T Consensus 22 ~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~-~~~~vi~gv---------~~~st~~~i~~a~~ 91 (289)
T PF00701_consen 22 DALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAA-GRVPVIAGV---------GANSTEEAIELARH 91 (289)
T ss_dssp HHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHT-TSSEEEEEE---------ESSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHcc-CceEEEecC---------cchhHHHHHHHHHH
Confidence 344 345666666 9999995 1111223333443344444444332 346788754 23344444 33444
Q ss_pred HHHhccccccccccccCCCChHHHHHHHHHHHHHHH
Q 024709 93 LVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIE 128 (264)
Q Consensus 93 ~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E 128 (264)
+...|+|++|+..=--...-+-+.++..+.|+..++
T Consensus 92 a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~~~ 127 (289)
T PF00701_consen 92 AQDAGADAVLVIPPYYFKPSQEELIDYFRAIADATD 127 (289)
T ss_dssp HHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHHSS
T ss_pred HhhcCceEEEEeccccccchhhHHHHHHHHHHhhcC
Confidence 778899999987655555567778888888885544
No 131
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=64.52 E-value=7.1 Score=35.36 Aligned_cols=37 Identities=27% Similarity=0.351 Sum_probs=31.2
Q ss_pred HhcCCcEEEEEcCCchHHHHHhh----cCCCCcEEEEcCCh
Q 024709 166 NKLKASALFVYTKTGQMASLLSR----SRPDCPIFAFAPMS 202 (264)
Q Consensus 166 ~~l~A~aIVv~T~sG~tA~~iSr----~RP~~PIiAvT~~~ 202 (264)
.+..++.+++-|.+|+||..+|- ..|.++.+.+||-.
T Consensus 130 ~~~~gDGlIVSTPtGSTAY~lSAGGPIv~P~~~~~~itPI~ 170 (246)
T PRK04761 130 EELVCDGVLVATPAGSTAYNLSAHGPILPLGSNLLALTPIS 170 (246)
T ss_pred EEEecCeEEEeCCcCHHHHHhhCCCcccCCCCCeEEEEeec
Confidence 34578999999999999999996 56888889888753
No 132
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=64.30 E-value=6.6 Score=36.04 Aligned_cols=36 Identities=28% Similarity=0.449 Sum_probs=30.9
Q ss_pred HhcCCcEEEEEcCCchHHHHHhh----cCCCCcEEEEcCC
Q 024709 166 NKLKASALFVYTKTGQMASLLSR----SRPDCPIFAFAPM 201 (264)
Q Consensus 166 ~~l~A~aIVv~T~sG~tA~~iSr----~RP~~PIiAvT~~ 201 (264)
.+..++.+|+-|.+|+||..+|- -.|..+.+.+||=
T Consensus 161 ~~~~gDGvIvsTptGSTAY~lSaGGpIv~p~~~~~~vtPi 200 (277)
T PRK03708 161 DEVRADGLIISTPTGSTAYAMSAGGPFVDPRLDAILIAPL 200 (277)
T ss_pred EEEecCEEEEeCCCchHHHHhhCCCcccCCCCCeEEEEec
Confidence 35679999999999999999996 5678899999873
No 133
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=64.30 E-value=13 Score=30.58 Aligned_cols=56 Identities=21% Similarity=0.210 Sum_probs=43.7
Q ss_pred CHHHHhcHHHHHh-h-cce--eeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEh
Q 024709 15 SIDSLKNLNEIIL-A-SDG--AMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVAS 70 (264)
Q Consensus 15 ~~~~~~n~~eI~~-~-~Dg--i~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~at 70 (264)
+.+.++++++.+. . .|- +++|-.|++...+.+++....+.+++.|++.|.++++.|
T Consensus 44 ~~~~l~~l~~~~~~~~~d~v~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~~~~~~il~~ 103 (183)
T cd04501 44 TSQMLVRFYEDVIALKPAVVIIMGGTNDIIVNTSLEMIKDNIRSMVELAEANGIKVILAS 103 (183)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCHHHHHHHHHHHHHHHHHCCCcEEEEe
Confidence 3466777776543 2 565 566788998777888999999999999999999988854
No 134
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=64.23 E-value=46 Score=29.42 Aligned_cols=99 Identities=9% Similarity=0.069 Sum_probs=58.6
Q ss_pred eEEEeccCHHHHhcHHHHHhhcceeeecCCCcccCCCC------CChHHHHHHHHHHHHHhC--CCEEEEhhhhhhhhhC
Q 024709 8 AVIAKIESIDSLKNLNEIILASDGAMVARGDLGAQVPL------EQVPSIQEKIVQLCRQLN--KPVIVASQLLESMIEY 79 (264)
Q Consensus 8 ~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~------~~v~~~qk~ii~~~~~~g--kpv~~atq~leSM~~~ 79 (264)
.+.-+=+| .++.++.+++.+|.|++ ++++-|. +....-.+++.+...++| .|+.+-.
T Consensus 110 GlalnP~T--p~~~i~~~l~~~D~vlv----MtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdG--------- 174 (220)
T PRK08883 110 GVVLNPAT--PLHHLEYIMDKVDLILL----MSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDG--------- 174 (220)
T ss_pred EEEeCCCC--CHHHHHHHHHhCCeEEE----EEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEEC---------
Confidence 34444445 57888999999999998 3333332 222222333333333333 6665522
Q ss_pred CCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHH
Q 024709 80 PIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSL 125 (264)
Q Consensus 80 ~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~ 125 (264)
.=+. ..+...+..|+|++...+--...+.|.++++.+++...
T Consensus 175 -GI~~---eni~~l~~aGAd~vVvGSaIf~~~d~~~~i~~l~~~~~ 216 (220)
T PRK08883 175 -GVKV---DNIREIAEAGADMFVAGSAIFGQPDYKAVIDEMRAELA 216 (220)
T ss_pred -CCCH---HHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHHH
Confidence 1121 23456778999999887664445678999988887543
No 135
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=64.09 E-value=45 Score=32.95 Aligned_cols=82 Identities=18% Similarity=0.251 Sum_probs=50.4
Q ss_pred eEEEeccCHHHHhcHHHHHhhcceeeecCCCcccC-------CCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCC
Q 024709 8 AVIAKIESIDSLKNLNEIILASDGAMVARGDLGAQ-------VPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYP 80 (264)
Q Consensus 8 ~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~-------~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~ 80 (264)
.++.-+-|.+...++.+. =+|+|-+|=|--+.. .|.+ -..+-.++.+.|++.|.|+|.-. .
T Consensus 272 vi~g~v~t~e~a~~l~~a--Gad~i~vg~g~gs~~~~r~~~~~g~p-~~~~~~~~~~~~~~~~~~viadG---------G 339 (486)
T PRK05567 272 IIAGNVATAEAARALIEA--GADAVKVGIGPGSICTTRIVAGVGVP-QITAIADAAEAAKKYGIPVIADG---------G 339 (486)
T ss_pred EEEeccCCHHHHHHHHHc--CCCEEEECCCCCccccceeecCCCcC-HHHHHHHHHHHhccCCCeEEEcC---------C
Confidence 355667777766655442 278887653321211 1212 22344556677777899998732 2
Q ss_pred CCChHHHHHHHHHHHhcccccccc
Q 024709 81 IPTRAEVADVSELVRQQADALMLS 104 (264)
Q Consensus 81 ~ptrae~~dv~~~v~~g~d~~~ls 104 (264)
..+ -.|++.|+..|||++|+.
T Consensus 340 i~~---~~di~kAla~GA~~v~~G 360 (486)
T PRK05567 340 IRY---SGDIAKALAAGASAVMLG 360 (486)
T ss_pred CCC---HHHHHHHHHhCCCEEEEC
Confidence 222 268899999999999996
No 136
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=64.03 E-value=7.4 Score=36.27 Aligned_cols=34 Identities=32% Similarity=0.555 Sum_probs=30.1
Q ss_pred hcCCcEEEEEcCCchHHHHHhh----cCCCCcEEEEcC
Q 024709 167 KLKASALFVYTKTGQMASLLSR----SRPDCPIFAFAP 200 (264)
Q Consensus 167 ~l~A~aIVv~T~sG~tA~~iSr----~RP~~PIiAvT~ 200 (264)
...++.+|+-|.||+||..+|. ..|.++.+.+||
T Consensus 178 ~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~itP 215 (305)
T PRK02649 178 DIAADGVILSTPTGSTAYSLSAGGPVITPDVPVLQLTP 215 (305)
T ss_pred EEecCeEEEeCCCcHHHHHhhCCCcccCCCCCeEEEEe
Confidence 4679999999999999999996 568889999887
No 137
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=63.27 E-value=1e+02 Score=28.00 Aligned_cols=124 Identities=12% Similarity=0.117 Sum_probs=71.2
Q ss_pred HHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCCh-HHHHHHHHHHHHHHHhhh
Q 024709 53 EKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFP-DKALAVLRSVSLRIEKWC 131 (264)
Q Consensus 53 k~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP-~eav~~m~~i~~~~E~~~ 131 (264)
.-+...|+++|.|+.+. .|..+...-+...-..|++.+...+ .|. .++++...++..+-
T Consensus 71 ~alA~~a~~~G~~~~i~-----------vp~~~~~~k~~~~~~~GA~v~~~~~-----~~~~~~~~~~a~~~~~~~---- 130 (299)
T TIGR01136 71 IALAMVAAAKGYKLILT-----------MPETMSLERRKLLRAYGAELILTPA-----EEGMKGAIDKAEELAAET---- 130 (299)
T ss_pred HHHHHHHHHcCCcEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCC-----CCChHHHHHHHHHHHhhC----
Confidence 35667899999999883 3444333444556679999776543 221 33444433332210
Q ss_pred hcccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcC--CcEEEEEcCCchHHHH----HhhcCCCCcEEEEcCChh
Q 024709 132 REGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLK--ASALFVYTKTGQMASL----LSRSRPDCPIFAFAPMSS 203 (264)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~--A~aIVv~T~sG~tA~~----iSr~RP~~PIiAvT~~~~ 203 (264)
..| ++..+. .. +..+..-....+.++.++++ .+.||+.+-+|.++-- +..++|...|+++-+...
T Consensus 131 ---~~~--~~~~~~-~~-~~~~~~g~~t~~~Ei~~ql~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~ 201 (299)
T TIGR01136 131 ---NKY--VMLDQF-EN-PANPEAHYKTTGPEIWRDTDGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAES 201 (299)
T ss_pred ---CCe--EecCCC-CC-chhHHHHHHHHHHHHHHhcCCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCC
Confidence 001 111111 11 11111113345567888875 7899999999988754 445679999999998643
No 138
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=63.08 E-value=45 Score=29.66 Aligned_cols=102 Identities=11% Similarity=0.117 Sum_probs=58.4
Q ss_pred ceEEEeccCHHHHhcHHHHHhhcceeeecCCCcccCCCC------CChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCC
Q 024709 7 IAVIAKIESIDSLKNLNEIILASDGAMVARGDLGAQVPL------EQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYP 80 (264)
Q Consensus 7 ~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~------~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~ 80 (264)
..+.-+=+| .++.++.+++.+|.|++ ++++-|. +....-.+++-+...++|+.+-+.- . .
T Consensus 113 ~GlalnP~T--~~~~i~~~l~~vD~Vlv----MtV~PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeV-------D-G 178 (223)
T PRK08745 113 AGLVLNPAT--PVDILDWVLPELDLVLV----MSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEI-------D-G 178 (223)
T ss_pred eeEEeCCCC--CHHHHHHHHhhcCEEEE----EEECCCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEE-------E-C
Confidence 344444455 57888999999999998 3444442 2222223333334444565533310 1 1
Q ss_pred CCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHH
Q 024709 81 IPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSL 125 (264)
Q Consensus 81 ~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~ 125 (264)
.=+. .-+......|+|.+.+.+--.....|.++++.+++...
T Consensus 179 GI~~---eti~~l~~aGaDi~V~GSaiF~~~d~~~~~~~lr~~~~ 220 (223)
T PRK08745 179 GVKA---DNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQMRAAVA 220 (223)
T ss_pred CCCH---HHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHHHH
Confidence 1111 12345677899999887543334469999999887643
No 139
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=63.06 E-value=7.2 Score=36.18 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=30.5
Q ss_pred hcCCcEEEEEcCCchHHHHHhh----cCCCCcEEEEcCC
Q 024709 167 KLKASALFVYTKTGQMASLLSR----SRPDCPIFAFAPM 201 (264)
Q Consensus 167 ~l~A~aIVv~T~sG~tA~~iSr----~RP~~PIiAvT~~ 201 (264)
+..++.+|+-|.||+||..+|- ..|.++.+.+||=
T Consensus 178 ~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~itPI 216 (296)
T PRK04539 178 TQRSDGLIVSTPTGSTAYSLAAGGPIMQAGLHAFTLVPI 216 (296)
T ss_pred EEecCeEEEECCCcHHHHHhhCCCceeCCCCCeEEEEec
Confidence 4578999999999999999996 6688899999973
No 140
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=62.92 E-value=7 Score=39.00 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=31.4
Q ss_pred HhcCCcEEEEEcCCchHHHHHhh----cCCCCcEEEEcCC
Q 024709 166 NKLKASALFVYTKTGQMASLLSR----SRPDCPIFAFAPM 201 (264)
Q Consensus 166 ~~l~A~aIVv~T~sG~tA~~iSr----~RP~~PIiAvT~~ 201 (264)
....++.+||-|.||+||..+|- ..|.++.+.+||=
T Consensus 376 ~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~l~~ivlTPI 415 (508)
T PLN02935 376 TCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPI 415 (508)
T ss_pred EEEECCcEEEecCccHHHHHHhcCCcccCCCCCeEEEEec
Confidence 34679999999999999999996 6689999999973
No 141
>TIGR03586 PseI pseudaminic acid synthase.
Probab=62.88 E-value=54 Score=30.91 Aligned_cols=68 Identities=16% Similarity=0.231 Sum_probs=47.4
Q ss_pred HHHHhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHH
Q 024709 16 IDSLKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELV 94 (264)
Q Consensus 16 ~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v 94 (264)
+-..+.+|.+.+. +|.+=||.||+. .+ .+++++-+.||||++.|. ..|..|+......+
T Consensus 97 pfd~~svd~l~~~~v~~~KI~S~~~~-n~----------~LL~~va~~gkPvilstG---------~~t~~Ei~~Av~~i 156 (327)
T TIGR03586 97 PFDETAVDFLESLDVPAYKIASFEIT-DL----------PLIRYVAKTGKPIIMSTG---------IATLEEIQEAVEAC 156 (327)
T ss_pred cCCHHHHHHHHHcCCCEEEECCcccc-CH----------HHHHHHHhcCCcEEEECC---------CCCHHHHHHHHHHH
Confidence 3334455666666 899999988882 22 356778888999999885 44778888888777
Q ss_pred H-hccccccc
Q 024709 95 R-QQADALML 103 (264)
Q Consensus 95 ~-~g~d~~~l 103 (264)
. .|.+-++|
T Consensus 157 ~~~g~~~i~L 166 (327)
T TIGR03586 157 REAGCKDLVL 166 (327)
T ss_pred HHCCCCcEEE
Confidence 6 57733444
No 142
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=62.34 E-value=57 Score=27.65 Aligned_cols=83 Identities=13% Similarity=0.048 Sum_probs=49.8
Q ss_pred cceeeecCCCcccCCCC--CCh-HHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccc
Q 024709 29 SDGAMVARGDLGAQVPL--EQV-PSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSG 105 (264)
Q Consensus 29 ~Dgi~i~rgdL~~~~~~--~~v-~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~ 105 (264)
+|.|.+++-.=+..=+. +.. ....+++.+.++ ..|+++...+ +. .++..+...|+|++.+++
T Consensus 125 aD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~v~a~GGI----------~~---~~i~~~~~~Ga~gv~~gs 189 (212)
T PRK00043 125 ADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVG--DIPIVAIGGI----------TP---ENAPEVLEAGADGVAVVS 189 (212)
T ss_pred CCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC--CCCEEEECCc----------CH---HHHHHHHHcCCCEEEEeH
Confidence 89999875433221111 111 333344433331 2898875532 22 456778889999999976
Q ss_pred cccCCCChHHHHHHHHHHHHH
Q 024709 106 ESAMGQFPDKALAVLRSVSLR 126 (264)
Q Consensus 106 eta~G~yP~eav~~m~~i~~~ 126 (264)
.-..-..|.++++.+.+.+.+
T Consensus 190 ~i~~~~d~~~~~~~l~~~~~~ 210 (212)
T PRK00043 190 AITGAEDPEAAARALLAAFRA 210 (212)
T ss_pred HhhcCCCHHHHHHHHHHHHhh
Confidence 655556799998888776543
No 143
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=62.10 E-value=48 Score=30.12 Aligned_cols=101 Identities=16% Similarity=0.255 Sum_probs=57.6
Q ss_pred HHHHhc-HHHHHhh-cceeeecCCCcccCCCC---CChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHH
Q 024709 16 IDSLKN-LNEIILA-SDGAMVARGDLGAQVPL---EQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADV 90 (264)
Q Consensus 16 ~~~~~n-~~eI~~~-~Dgi~i~rgdL~~~~~~---~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv 90 (264)
.+++++ ++-+++. +||+++. |- ..|... ++=..+-+.+++.+ +-..|+++.+ ...+-.|.-+.
T Consensus 21 ~~~l~~~i~~l~~~Gv~gi~~~-Gs-~GE~~~ls~~Er~~~~~~~~~~~-~~~~~vi~gv---------~~~~~~~~i~~ 88 (292)
T PRK03170 21 FAALRKLVDYLIANGTDGLVVV-GT-TGESPTLTHEEHEELIRAVVEAV-NGRVPVIAGT---------GSNSTAEAIEL 88 (292)
T ss_pred HHHHHHHHHHHHHcCCCEEEEC-Cc-CCccccCCHHHHHHHHHHHHHHh-CCCCcEEeec---------CCchHHHHHHH
Confidence 344444 4555655 9999974 22 233333 33333344444443 2236877643 22233444333
Q ss_pred H-HHHHhccccccccccccCCCChHHHHHHHHHHHHHHH
Q 024709 91 S-ELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIE 128 (264)
Q Consensus 91 ~-~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E 128 (264)
+ .+...|+|++|+..=.-....+-+.++....|+..++
T Consensus 89 a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~ 127 (292)
T PRK03170 89 TKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATD 127 (292)
T ss_pred HHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCC
Confidence 3 4556799999998665555556778888888876654
No 144
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=61.98 E-value=78 Score=28.70 Aligned_cols=62 Identities=15% Similarity=0.256 Sum_probs=38.0
Q ss_pred HHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhh
Q 024709 53 EKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCR 132 (264)
Q Consensus 53 k~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~ 132 (264)
+.+-+..+..+.|+|....+- + ..|+..++..|+|+|++..---. .| .+.+++.+.-+.|+.
T Consensus 221 ~~i~~i~~~~~ipii~~GGI~---------~---~~da~~~l~~GAd~V~igra~l~--~p----~~~~~i~~~l~~~~~ 282 (296)
T cd04740 221 RMVYQVYKAVEIPIIGVGGIA---------S---GEDALEFLMAGASAVQVGTANFV--DP----EAFKEIIEGLEAYLD 282 (296)
T ss_pred HHHHHHHHhcCCCEEEECCCC---------C---HHHHHHHHHcCCCEEEEchhhhc--Ch----HHHHHHHHHHHHHHH
Confidence 333333444589999855332 2 24668899999999999855333 35 344555555555543
No 145
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=61.90 E-value=7 Score=36.10 Aligned_cols=37 Identities=30% Similarity=0.450 Sum_probs=31.4
Q ss_pred HhcCCcEEEEEcCCchHHHHHhh----cCCCCcEEEEcCCh
Q 024709 166 NKLKASALFVYTKTGQMASLLSR----SRPDCPIFAFAPMS 202 (264)
Q Consensus 166 ~~l~A~aIVv~T~sG~tA~~iSr----~RP~~PIiAvT~~~ 202 (264)
.+..++.+|+-|.+|+||..+|- ..|.++.+.+||-.
T Consensus 172 ~~~~gDGlIVsTPtGSTAYslSaGGPIv~p~~~~~~ltPI~ 212 (291)
T PRK02155 172 YNQRSDGLIVATPTGSTAYALSAGGPILHPQLPGWVLVPIA 212 (291)
T ss_pred EEEecCeEEEECCCchhhhhhhcCCcccCCCCCeEEEEecC
Confidence 35678999999999999999996 56888999888753
No 146
>PLN02565 cysteine synthase
Probab=61.90 E-value=1e+02 Score=28.71 Aligned_cols=123 Identities=13% Similarity=0.175 Sum_probs=72.2
Q ss_pred HHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhhcc
Q 024709 55 IVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCREG 134 (264)
Q Consensus 55 ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~~~ 134 (264)
+...|+.+|.|+.+- .|..+...-+...-..|++.++...+ .| ..++++...++.++ ++
T Consensus 82 lA~~a~~~G~~~~iv-----------vp~~~~~~k~~~i~~~GA~V~~~~~~--~~--~~~~~~~a~~l~~~-~~----- 140 (322)
T PLN02565 82 LAFMAAAKGYKLIIT-----------MPASMSLERRIILLAFGAELVLTDPA--KG--MKGAVQKAEEILAK-TP----- 140 (322)
T ss_pred HHHHHHHcCCeEEEE-----------eCCCCcHHHHHHHHHcCCEEEEeCCC--CC--cHHHHHHHHHHHHh-CC-----
Confidence 456899999999982 45555555556777799998765332 12 23454444443322 10
Q ss_pred cccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcC--CcEEEEEcCCchHHH----HHhhcCCCCcEEEEcCChh
Q 024709 135 KQHATFEPPPISSSVSAGIPGEICNGAAKIANKLK--ASALFVYTKTGQMAS----LLSRSRPDCPIFAFAPMSS 203 (264)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~--A~aIVv~T~sG~tA~----~iSr~RP~~PIiAvT~~~~ 203 (264)
. .++..+... +.++.--...-+.++.+.++ .++||+..-+|.+.- .+..++|.+.|+++-+...
T Consensus 141 ~---~~~~~q~~n--~~n~~~~~~t~a~Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s 210 (322)
T PLN02565 141 N---SYILQQFEN--PANPKIHYETTGPEIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVES 210 (322)
T ss_pred C---cEeecccCC--HhHHHHHHHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCC
Confidence 0 111122111 11111112334456677764 799999999999765 4455679999999998643
No 147
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=61.57 E-value=27 Score=26.20 Aligned_cols=42 Identities=21% Similarity=0.517 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcCC---------chHHHHHhhcCCCCcEEEE
Q 024709 156 EICNGAAKIANKLKASALFVYTKT---------GQMASLLSRSRPDCPIFAF 198 (264)
Q Consensus 156 aIA~aAv~lA~~l~A~aIVv~T~s---------G~tA~~iSr~RP~~PIiAv 198 (264)
..+....+.+.+.+++.||+-++. |+++..+.+.-| ||++.+
T Consensus 89 ~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~-~pVlvv 139 (140)
T PF00582_consen 89 DVADAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAP-CPVLVV 139 (140)
T ss_dssp SHHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTS-SEEEEE
T ss_pred ccchhhhhccccccceeEEEeccCCCCccCCCcCCHHHHHHHcCC-CCEEEe
Confidence 366677888999999999988877 678888888666 899875
No 148
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=61.45 E-value=16 Score=35.63 Aligned_cols=45 Identities=18% Similarity=0.366 Sum_probs=34.3
Q ss_pred HHHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEE
Q 024709 17 DSLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIV 68 (264)
Q Consensus 17 ~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~ 68 (264)
.=++++++.++-.|++++. +++.--+-. -+.||+.||++||||.+
T Consensus 132 ~ll~~~~~~l~~~~~vVLS------DY~KG~L~~-~q~~I~~ar~~~~pVLv 176 (467)
T COG2870 132 KLLEKIKNALKSFDALVLS------DYAKGVLTN-VQKMIDLAREAGIPVLV 176 (467)
T ss_pred HHHHHHHHHhhcCCEEEEe------ccccccchh-HHHHHHHHHHcCCcEEE
Confidence 3457788889999999996 444333333 56789999999999998
No 149
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=61.38 E-value=16 Score=34.46 Aligned_cols=102 Identities=18% Similarity=0.288 Sum_probs=66.4
Q ss_pred cceEEEeccCHHHHhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEE------Ehhhhhhhhh
Q 024709 6 NIAVIAKIESIDSLKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIV------ASQLLESMIE 78 (264)
Q Consensus 6 ~~~iiakIE~~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~------atq~leSM~~ 78 (264)
.+.|.-...+-.-++.+.+-++. -+.||+.-. .+|.++-....+++++.|+.+|.+|=- ..+ +....
T Consensus 85 ~VPV~lHLDHg~~~e~i~~ai~~GftSVMiD~S----~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~e--d~~~~ 158 (321)
T PRK07084 85 PIPIVLHLDHGDSFELCKDCIDSGFSSVMIDGS----HLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVE--DEVSA 158 (321)
T ss_pred CCcEEEECCCCCCHHHHHHHHHcCCCEEEeeCC----CCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCcc--CCccC
Confidence 34566666665555555555555 789999854 458899999999999999999988621 010 00000
Q ss_pred CCCCChHHHHHHHHHHH-hccccccccccccCCCChH
Q 024709 79 YPIPTRAEVADVSELVR-QQADALMLSGESAMGQFPD 114 (264)
Q Consensus 79 ~~~ptrae~~dv~~~v~-~g~d~~~ls~eta~G~yP~ 114 (264)
. .-......+...++. -|+|++-.|--|+.|.|+-
T Consensus 159 ~-~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~ 194 (321)
T PRK07084 159 E-HHTYTQPEEVEDFVKKTGVDSLAISIGTSHGAYKF 194 (321)
T ss_pred c-ccccCCHHHHHHHHHHhCCCEEeeccccccccccC
Confidence 0 000111234466775 4999999999999999963
No 150
>PF04009 DUF356: Protein of unknown function (DUF356); InterPro: IPR007154 Members of this family are around 120 amino acids in length and are found in some archaebacteria. The function of this family is unknown. However it contains a conserved motif IHPPAH that may be involved in its function.
Probab=61.09 E-value=8.6 Score=30.44 Aligned_cols=51 Identities=25% Similarity=0.288 Sum_probs=40.8
Q ss_pred cCCcEE-EEEcCCchHHHHHhhcCCCCcEEEEcCChhhhhhcccccccEEEE
Q 024709 168 LKASAL-FVYTKTGQMASLLSRSRPDCPIFAFAPMSSVRRRLNLQWGLVPFC 218 (264)
Q Consensus 168 l~A~aI-Vv~T~sG~tA~~iSr~RP~~PIiAvT~~~~~aR~L~L~~GV~P~~ 218 (264)
+++.++ =+-...|.+...+.+-.|++.|+++++....++.|.=.||-+|.+
T Consensus 55 ~k~A~lv~v~~~~~~aI~~lrkIHPPAHIiVis~~~~~y~eL~~~~~~~p~l 106 (107)
T PF04009_consen 55 CKAAALVKVEEDATKAIDRLRKIHPPAHIIVISPRHDVYEELLEMFGKLPEL 106 (107)
T ss_pred cchheEEEecCCchhHHHHHhhcCCCceEEEECCCchHHHHHHHHhhhCccC
Confidence 344333 344567778889999999999999999999999999999988753
No 151
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=61.03 E-value=21 Score=32.96 Aligned_cols=98 Identities=16% Similarity=0.302 Sum_probs=63.2
Q ss_pred ceEEEeccCHHHHhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEE-----E-hh--hhhhh-
Q 024709 7 IAVIAKIESIDSLKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIV-----A-SQ--LLESM- 76 (264)
Q Consensus 7 ~~iiakIE~~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~-----a-tq--~leSM- 76 (264)
+.|.-....-.-++.+..=++. -+.||+.-. ++|.++-....|++++.|+..|.+|=. . .+ .....
T Consensus 75 VPValHLDH~~~~e~i~~ai~~GftSVM~DgS----~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~ 150 (284)
T PRK12857 75 VPVALHLDHGTDFEQVMKCIRNGFTSVMIDGS----KLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDER 150 (284)
T ss_pred CCEEEECCCCCCHHHHHHHHHcCCCeEEEeCC----CCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccc
Confidence 4455555554444444444444 788999844 568899999999999999999988731 0 00 00000
Q ss_pred -hhCCCCChHHHHHHHHHHH-hccccccccccccCCCCh
Q 024709 77 -IEYPIPTRAEVADVSELVR-QQADALMLSGESAMGQFP 113 (264)
Q Consensus 77 -~~~~~ptrae~~dv~~~v~-~g~d~~~ls~eta~G~yP 113 (264)
.....| .|...++. -|+|++-.|--|+-|.|+
T Consensus 151 ~~~~T~p-----e~a~~Fv~~TgvD~LAvaiGt~HG~y~ 184 (284)
T PRK12857 151 EAAMTDP-----EEARRFVEETGVDALAIAIGTAHGPYK 184 (284)
T ss_pred hhhcCCH-----HHHHHHHHHHCCCEEeeccCccccccC
Confidence 001223 34466774 499999999999999996
No 152
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=60.57 E-value=13 Score=33.49 Aligned_cols=44 Identities=25% Similarity=0.376 Sum_probs=33.5
Q ss_pred HHHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEE
Q 024709 17 DSLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIV 68 (264)
Q Consensus 17 ~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~ 68 (264)
+.++.++++++-.|.+.|+.| |+-. .. ..++++.++++++|+++
T Consensus 81 ~~~~~~~~~~~~~davvig~G-l~~~----~~---~~~l~~~~~~~~~pvVl 124 (272)
T TIGR00196 81 WKVDEDEELLERYDVVVIGPG-LGQD----PS---FKKAVEEVLELDKPVVL 124 (272)
T ss_pred hhHHHHHhhhccCCEEEEcCC-CCCC----HH---HHHHHHHHHhcCCCEEE
Confidence 356777788878999999877 4322 21 66788899999999997
No 153
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=59.75 E-value=17 Score=33.71 Aligned_cols=104 Identities=15% Similarity=0.280 Sum_probs=65.1
Q ss_pred cceEEEeccCHHHHhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEE----EhhhhhhhhhCC
Q 024709 6 NIAVIAKIESIDSLKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIV----ASQLLESMIEYP 80 (264)
Q Consensus 6 ~~~iiakIE~~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~----atq~leSM~~~~ 80 (264)
.+.|.-....-..++.+..=++. -+.||+.. -++|.++-....|++++.|+.+|.+|=. -..-=+......
T Consensus 74 ~VPValHLDHg~~~e~i~~ai~~GFtSVM~Dg----S~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~ 149 (286)
T PRK12738 74 NMPLALHLDHHESLDDIRRKVHAGVRSAMIDG----SHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDA 149 (286)
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCCeEeecC----CCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCccccc
Confidence 34555555555555555444444 78899984 4568899999999999999999998721 000000000000
Q ss_pred CC-ChHHHHHHHHHHHh-ccccccccccccCCCCh
Q 024709 81 IP-TRAEVADVSELVRQ-QADALMLSGESAMGQFP 113 (264)
Q Consensus 81 ~p-trae~~dv~~~v~~-g~d~~~ls~eta~G~yP 113 (264)
.. ......+...++.. |+|++-.|--|+-|.|+
T Consensus 150 ~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y~ 184 (286)
T PRK12738 150 ESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYS 184 (286)
T ss_pred chhcCCCHHHHHHHHHHhCCCEEEeccCcccCCCC
Confidence 00 01112344667764 99999999999999996
No 154
>PLN03013 cysteine synthase
Probab=59.73 E-value=1e+02 Score=30.29 Aligned_cols=124 Identities=11% Similarity=0.130 Sum_probs=70.0
Q ss_pred HHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhhc
Q 024709 54 KIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCRE 133 (264)
Q Consensus 54 ~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~~ 133 (264)
-+...|+.+|.|+++- .|..+...-+...-..|++.+...+. .| | .++++...+++++-.
T Consensus 189 ALA~~a~~~G~~~~Vv-----------vP~~~s~~K~~~ira~GAeVi~v~~~--~~-~-~~a~~~A~ela~~~~----- 248 (429)
T PLN03013 189 GLAFIAASRGYRLILT-----------MPASMSMERRVLLKAFGAELVLTDPA--KG-M-TGAVQKAEEILKNTP----- 248 (429)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCcHHHHHHHHHcCCEEEEECCC--CC-h-HHHHHHHHHHHhhcC-----
Confidence 3456899999999982 34444444445566799998776432 12 1 234444444332210
Q ss_pred ccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhc--CCcEEEEEcCCchHHHH----HhhcCCCCcEEEEcCChh
Q 024709 134 GKQHATFEPPPISSSVSAGIPGEICNGAAKIANKL--KASALFVYTKTGQMASL----LSRSRPDCPIFAFAPMSS 203 (264)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l--~A~aIVv~T~sG~tA~~----iSr~RP~~PIiAvT~~~~ 203 (264)
..++..|... +.++..-...-+.++.+++ +.+.||+..-+|.+..- +.+.+|++.|+++-|...
T Consensus 249 ----g~~~~~qy~N--p~n~~ah~~ttg~EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs 318 (429)
T PLN03013 249 ----DAYMLQQFDN--PANPKIHYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTES 318 (429)
T ss_pred ----CeEeCCCCCC--HHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCC
Confidence 0112222111 1111111223345666666 47999999999987554 445679999999998664
No 155
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=59.68 E-value=83 Score=29.80 Aligned_cols=154 Identities=14% Similarity=0.073 Sum_probs=86.0
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhcccccccccccc-------CCCChHHH
Q 024709 44 PLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESA-------MGQFPDKA 116 (264)
Q Consensus 44 ~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta-------~G~yP~ea 116 (264)
|.+..-..-.+.++...+.+.++-++ ...|+-..|+-.+...|+|.+-+..-++ .|+-+.++
T Consensus 43 G~p~~~~~~~e~i~~i~~~~~~~~i~-----------~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~ 111 (365)
T TIGR02660 43 GIPAMGEEERAVIRAIVALGLPARLM-----------AWCRARDADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWV 111 (365)
T ss_pred eCCCCCHHHHHHHHHHHHcCCCcEEE-----------EEcCCCHHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHH
Confidence 33333333345566666665543331 1223345677888889999887764443 57778888
Q ss_pred HHHHHHHHHHHHhhhhcccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcCCcEEEEEcCCch-----HHHHHhhcCC
Q 024709 117 LAVLRSVSLRIEKWCREGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLKASALFVYTKTGQ-----MASLLSRSRP 191 (264)
Q Consensus 117 v~~m~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~A~aIVv~T~sG~-----tA~~iSr~RP 191 (264)
++.+.+.++.+.+.-.. -.+...+ ............++.+.+.+++.|.+..+.|. .+.++.+.|.
T Consensus 112 l~~~~~~i~~ak~~g~~----v~~~~ed-----~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~ 182 (365)
T TIGR02660 112 LERLARLVSFARDRGLF----VSVGGED-----ASRADPDFLVELAEVAAEAGADRFRFADTVGILDPFSTYELVRALRQ 182 (365)
T ss_pred HHHHHHHHHHHHhCCCE----EEEeecC-----CCCCCHHHHHHHHHHHHHcCcCEEEEcccCCCCCHHHHHHHHHHHHH
Confidence 98888888776542110 0111111 11122344555566677889998887777776 3455555554
Q ss_pred C--CcEEEEcCChh---hhhhc-ccccccEEE
Q 024709 192 D--CPIFAFAPMSS---VRRRL-NLQWGLVPF 217 (264)
Q Consensus 192 ~--~PIiAvT~~~~---~aR~L-~L~~GV~P~ 217 (264)
. +||=.-++|.. +|..+ .+..|+.-+
T Consensus 183 ~~~v~l~~H~HNd~GlA~ANalaA~~aGa~~v 214 (365)
T TIGR02660 183 AVDLPLEMHAHNDLGMATANTLAAVRAGATHV 214 (365)
T ss_pred hcCCeEEEEecCCCChHHHHHHHHHHhCCCEE
Confidence 3 56655555432 34443 355555544
No 156
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=59.16 E-value=9.5 Score=31.61 Aligned_cols=28 Identities=29% Similarity=0.544 Sum_probs=21.9
Q ss_pred HHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHH
Q 024709 53 EKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAE 86 (264)
Q Consensus 53 k~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae 86 (264)
.++|+.-.++|||+++||. .+|.|.-.|
T Consensus 66 ~evi~~I~~~G~PviVAtD------V~p~P~~V~ 93 (138)
T PF04312_consen 66 SEVIEWISEYGKPVIVATD------VSPPPETVK 93 (138)
T ss_pred HHHHHHHHHcCCEEEEEec------CCCCcHHHH
Confidence 5778888899999999996 456776553
No 157
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=59.16 E-value=1.2e+02 Score=29.09 Aligned_cols=127 Identities=13% Similarity=0.150 Sum_probs=69.5
Q ss_pred HHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhh
Q 024709 53 EKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCR 132 (264)
Q Consensus 53 k~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~ 132 (264)
.-+...|+++|.|+.+- .|..+...-+...-..|++.+...+.. .-..+-..++...++.++.+.
T Consensus 75 ~alA~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~v~~~~~~~-~~~~~~~~~~~a~~l~~~~~~--- 139 (454)
T TIGR01137 75 IGLALVAAIKGYKCIIV-----------LPEKMSNEKVDVLKALGAEIVRTPTAA-AFDSPESHIGVAKRLVREIPG--- 139 (454)
T ss_pred HHHHHHHHHcCCeEEEE-----------eCCCcCHHHHHHHHHCCCEEEEcCCcc-CCCchHHHHHHHHHHHHhCCC---
Confidence 44567899999999882 232222223455567999987764321 011121123333333222111
Q ss_pred cccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHHh----hcCCCCcEEEEcCCh
Q 024709 133 EGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLK--ASALFVYTKTGQMASLLS----RSRPDCPIFAFAPMS 202 (264)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~--A~aIVv~T~sG~tA~~iS----r~RP~~PIiAvT~~~ 202 (264)
.++..+... +.++..-....+.++.++++ .++||+..-+|.|.--++ .++|.+.|+++.+..
T Consensus 140 ------~~~~~~~~~--~~~~~~~~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~ 207 (454)
T TIGR01137 140 ------AHILDQYNN--PSNPLAHYDGTGPEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEG 207 (454)
T ss_pred ------cEecccCCC--hhhHHHHHHhhHHHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCC
Confidence 111112111 11111113344567777774 699999999999876554 467999999998854
No 158
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=59.10 E-value=76 Score=29.94 Aligned_cols=62 Identities=15% Similarity=0.267 Sum_probs=44.9
Q ss_pred HHhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHH-
Q 024709 18 SLKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVR- 95 (264)
Q Consensus 18 ~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~- 95 (264)
..+.+|.+.+. +|.+=||.+|+. . -.+++.+.+.|||+++.|.| .|..|+.....++.
T Consensus 98 d~~svd~l~~~~v~~~KIaS~~~~------n-----~pLL~~~A~~gkPvilStGm---------atl~Ei~~Av~~i~~ 157 (329)
T TIGR03569 98 DLESADFLEDLGVPRFKIPSGEIT------N-----APLLKKIARFGKPVILSTGM---------ATLEEIEAAVGVLRD 157 (329)
T ss_pred CHHHHHHHHhcCCCEEEECccccc------C-----HHHHHHHHhcCCcEEEECCC---------CCHHHHHHHHHHHHH
Confidence 34445566666 899999988883 2 33677788899999998854 46788888787776
Q ss_pred hccc
Q 024709 96 QQAD 99 (264)
Q Consensus 96 ~g~d 99 (264)
.|.+
T Consensus 158 ~G~~ 161 (329)
T TIGR03569 158 AGTP 161 (329)
T ss_pred cCCC
Confidence 4654
No 159
>PRK07476 eutB threonine dehydratase; Provisional
Probab=59.08 E-value=1.2e+02 Score=28.13 Aligned_cols=120 Identities=14% Similarity=0.127 Sum_probs=71.1
Q ss_pred HHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhh
Q 024709 53 EKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCR 132 (264)
Q Consensus 53 k~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~ 132 (264)
.-+...|++.|.|+.+- .|..+.-.-+...-..|++.+...+ ..-++++...+++++- .+
T Consensus 80 ~alA~~a~~~G~~~~i~-----------vp~~~~~~k~~~~~~~GA~V~~~~~------~~~~~~~~a~~~~~~~-g~-- 139 (322)
T PRK07476 80 RALAYAARALGIRATIC-----------MSRLVPANKVDAIRALGAEVRIVGR------SQDDAQAEVERLVREE-GL-- 139 (322)
T ss_pred HHHHHHHHHhCCCEEEE-----------eCCCCCHHHHHHHHHcCCEEEEECC------CHHHHHHHHHHHHHhc-CC--
Confidence 45677899999999882 2332222334556678999765542 2345666555543321 11
Q ss_pred cccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcC-CcEEEEEcCCchHHHHHh----hcCCCCcEEEEcCCh
Q 024709 133 EGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLK-ASALFVYTKTGQMASLLS----RSRPDCPIFAFAPMS 202 (264)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~-A~aIVv~T~sG~tA~~iS----r~RP~~PIiAvT~~~ 202 (264)
++..+... +.. .+.....+.++.++++ .++||+.+-+|.+.--++ .+.|...|+++-+..
T Consensus 140 -------~~~~~~~n--~~~-~~g~~t~~~Ei~~Q~~~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~ 204 (322)
T PRK07476 140 -------TMVPPFDD--PRI-IAGQGTIGLEILEALPDVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMER 204 (322)
T ss_pred -------EEeCCCCC--cce-eechhHHHHHHHHhCcCCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 11111111 111 1223455567777764 578999999999765444 567999999998853
No 160
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=58.96 E-value=41 Score=30.96 Aligned_cols=118 Identities=16% Similarity=0.249 Sum_probs=71.7
Q ss_pred cceEEEeccCHHHHhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEh-hh--hhhhhhCCC
Q 024709 6 NIAVIAKIESIDSLKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVAS-QL--LESMIEYPI 81 (264)
Q Consensus 6 ~~~iiakIE~~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~at-q~--leSM~~~~~ 81 (264)
.+.|.-....-.-++.+.+-++. -+.||+.-. .+|.++-....|++++.|+..|.+|=.== .+ -|.-.....
T Consensus 69 ~VPV~lHLDH~~~~~~i~~ai~~GftSVMiD~S----~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~ 144 (276)
T cd00947 69 SVPVALHLDHGSSFELIKRAIRAGFSSVMIDGS----HLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDE 144 (276)
T ss_pred CCCEEEECCCCCCHHHHHHHHHhCCCEEEeCCC----CCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccccc
Confidence 34555555555444444444444 789999844 46889999999999999999998873200 00 000000000
Q ss_pred CChHHHHHHHHHHHh-ccccccccccccCCCChH----HHHHHHHHHHHHH
Q 024709 82 PTRAEVADVSELVRQ-QADALMLSGESAMGQFPD----KALAVLRSVSLRI 127 (264)
Q Consensus 82 ptrae~~dv~~~v~~-g~d~~~ls~eta~G~yP~----eav~~m~~i~~~~ 127 (264)
-......|+..++.. |+|++..|--|.-|.||- -=.+.+.+|...+
T Consensus 145 ~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~ 195 (276)
T cd00947 145 GLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERV 195 (276)
T ss_pred ccCCCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHh
Confidence 001123455677765 999999999999999975 3344455554443
No 161
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=58.70 E-value=11 Score=34.70 Aligned_cols=36 Identities=31% Similarity=0.399 Sum_probs=30.4
Q ss_pred hcCCcEEEEEcCCchHHHHHhh----cCCCCcEEEEcCCh
Q 024709 167 KLKASALFVYTKTGQMASLLSR----SRPDCPIFAFAPMS 202 (264)
Q Consensus 167 ~l~A~aIVv~T~sG~tA~~iSr----~RP~~PIiAvT~~~ 202 (264)
+..++.+|+-|.+|+||..+|- -.|.++.+.+||=.
T Consensus 153 ~~~~DGlIVsTPtGSTAY~lSAGGPIv~P~~~~~~itPI~ 192 (272)
T PRK02231 153 SQRSDGLIISTPTGSTAYSLSAGGPILTPNLNAIALVPMF 192 (272)
T ss_pred EEecCeEEEECCCcHHHHHhhCCCceeCCCCCeEEEEecc
Confidence 3578999999999999999996 56888888888743
No 162
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=58.54 E-value=34 Score=26.06 Aligned_cols=57 Identities=25% Similarity=0.356 Sum_probs=41.4
Q ss_pred HhcHHHHHhh--cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCC-CCChHHHHHHHHHHH
Q 024709 19 LKNLNEIILA--SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYP-IPTRAEVADVSELVR 95 (264)
Q Consensus 19 ~~n~~eI~~~--~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~-~ptrae~~dv~~~v~ 95 (264)
..+++++++. .|.++|+-.+ .....++..|-++||+|++ +.| ..+..|...+..+..
T Consensus 51 ~~~~~~ll~~~~~D~V~I~tp~-----------~~h~~~~~~~l~~g~~v~~---------EKP~~~~~~~~~~l~~~a~ 110 (120)
T PF01408_consen 51 YTDLEELLADEDVDAVIIATPP-----------SSHAEIAKKALEAGKHVLV---------EKPLALTLEEAEELVEAAK 110 (120)
T ss_dssp ESSHHHHHHHTTESEEEEESSG-----------GGHHHHHHHHHHTTSEEEE---------ESSSSSSHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhcCCEEEEecCC-----------cchHHHHHHHHHcCCEEEE---------EcCCcCCHHHHHHHHHHHH
Confidence 3568899984 9999997443 3467888999999999997 555 456666666555443
No 163
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=58.49 E-value=82 Score=29.37 Aligned_cols=44 Identities=16% Similarity=0.259 Sum_probs=37.5
Q ss_pred HHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhh
Q 024709 88 ADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCR 132 (264)
Q Consensus 88 ~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~ 132 (264)
.+.-+++..|+|.+--+||...|+ -+|||+-|+.|..+.-....
T Consensus 132 ~EAlrai~~GadmI~Ttge~gtg~-v~~av~h~r~~~~~i~~L~g 175 (293)
T PRK04180 132 GEALRRIAEGAAMIRTKGEAGTGN-VVEAVRHMRQINGEIRRLTS 175 (293)
T ss_pred HHHHHHHHCCCCeeeccCCCCCcc-HHHHHHHHHHHHHHHHHHhC
Confidence 345689999999999999999998 58999999999988876543
No 164
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=58.34 E-value=1.4e+02 Score=26.74 Aligned_cols=100 Identities=20% Similarity=0.264 Sum_probs=58.6
Q ss_pred HHHHhc-HHHHHhh-cceeeecCCCcccCCCC---CChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHH
Q 024709 16 IDSLKN-LNEIILA-SDGAMVARGDLGAQVPL---EQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADV 90 (264)
Q Consensus 16 ~~~~~n-~~eI~~~-~Dgi~i~rgdL~~~~~~---~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv 90 (264)
.+++++ ++-.++. +|||++. | -+.|... ++-..+.+.+.+.++ ...|+++.+ ..++-.|.-+.
T Consensus 17 ~~~~~~~i~~l~~~Gv~gi~~~-G-stGE~~~ls~~Er~~l~~~~~~~~~-~~~~vi~gv---------~~~~~~~~i~~ 84 (281)
T cd00408 17 LDALRRLVEFLIEAGVDGLVVL-G-TTGEAPTLTDEERKEVIEAVVEAVA-GRVPVIAGV---------GANSTREAIEL 84 (281)
T ss_pred HHHHHHHHHHHHHcCCCEEEEC-C-CCcccccCCHHHHHHHHHHHHHHhC-CCCeEEEec---------CCccHHHHHHH
Confidence 344444 3555554 8999874 3 3334433 333344444444443 246777643 34555566555
Q ss_pred HH-HHHhccccccccccccCCCChHHHHHHHHHHHHHH
Q 024709 91 SE-LVRQQADALMLSGESAMGQFPDKALAVLRSVSLRI 127 (264)
Q Consensus 91 ~~-~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~ 127 (264)
+. +-..|+|++|+..-.-...-+-+.++....|+...
T Consensus 85 a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~ 122 (281)
T cd00408 85 ARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADAS 122 (281)
T ss_pred HHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcC
Confidence 54 55569999999866544445677788888887654
No 165
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=57.99 E-value=1e+02 Score=29.13 Aligned_cols=121 Identities=12% Similarity=0.156 Sum_probs=72.1
Q ss_pred HHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhh
Q 024709 53 EKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCR 132 (264)
Q Consensus 53 k~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~ 132 (264)
.-+...|++.|.|+.+- .|..+....+...-..|++.++.. ...-++.+...+++.+- .+
T Consensus 61 ~alA~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~V~~~~------~~~~~a~~~a~~~~~~~-~~-- 120 (380)
T TIGR01127 61 QGVAYAAKKFGIKAVIV-----------MPESAPPSKVKATKSYGAEVILHG------DDYDEAYAFATSLAEEE-GR-- 120 (380)
T ss_pred HHHHHHHHHcCCCEEEE-----------EcCCCcHHHHHHHHHCCCEEEEEC------CCHHHHHHHHHHHHHhc-CC--
Confidence 46677899999999983 233332334556667999976542 23445655554443321 11
Q ss_pred cccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHh----hcCCCCcEEEEcCChh
Q 024709 133 EGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKL-KASALFVYTKTGQMASLLS----RSRPDCPIFAFAPMSS 203 (264)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l-~A~aIVv~T~sG~tA~~iS----r~RP~~PIiAvT~~~~ 203 (264)
++..+... +. ....-..-+.++.+++ +.++||+..-+|.+..-++ .++|...|+++-+...
T Consensus 121 -------~~~~~~~~--~~-~~~g~~t~~~Ei~~q~~~~D~vv~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~ 186 (380)
T TIGR01127 121 -------VFVHPFDD--EF-VMAGQGTIGLEIMEDIPDVDTVIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGA 186 (380)
T ss_pred -------EecCCCCC--hh-hhhhhHHHHHHHHHhCCCCCEEEEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 11112111 11 1122233455667776 4689999999999766554 4579999999998654
No 166
>PLN02550 threonine dehydratase
Probab=57.85 E-value=1.2e+02 Score=31.04 Aligned_cols=120 Identities=20% Similarity=0.307 Sum_probs=71.8
Q ss_pred HHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhhc
Q 024709 54 KIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCRE 133 (264)
Q Consensus 54 ~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~~ 133 (264)
-+...|++.|.|+.+- .|..+-...+...-..|++.++-. ...-++.+...+++++ +.+
T Consensus 171 gvA~aA~~lGika~Iv-----------mP~~tp~~Kv~~~r~~GAeVvl~g------~~~dea~~~A~~la~e-~g~--- 229 (591)
T PLN02550 171 GVALSAQRLGCDAVIA-----------MPVTTPEIKWQSVERLGATVVLVG------DSYDEAQAYAKQRALE-EGR--- 229 (591)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeC------CCHHHHHHHHHHHHHh-cCC---
Confidence 4667899999998873 222222223445567899877653 2344565555544332 111
Q ss_pred ccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHHh----hcCCCCcEEEEcCChh
Q 024709 134 GKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLK--ASALFVYTKTGQMASLLS----RSRPDCPIFAFAPMSS 203 (264)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~--A~aIVv~T~sG~tA~~iS----r~RP~~PIiAvT~~~~ 203 (264)
.+ ..+..+ + .....-..-+.++.++++ .++||+..-+|.+.--++ .++|...||++-+...
T Consensus 230 -----~f-i~pfdd--p-~viaGqgTig~EI~eQl~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a 296 (591)
T PLN02550 230 -----TF-IPPFDH--P-DVIAGQGTVGMEIVRQHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDA 296 (591)
T ss_pred -----EE-ECCCCC--h-HHHHHHHHHHHHHHHHcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 11 111111 1 122333445678888875 589999999999765444 5789999999998553
No 167
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=57.73 E-value=13 Score=33.66 Aligned_cols=35 Identities=31% Similarity=0.508 Sum_probs=29.0
Q ss_pred hcCCcEEEEEcCCchHHHHHhh----cCCCCcEEEEcCC
Q 024709 167 KLKASALFVYTKTGQMASLLSR----SRPDCPIFAFAPM 201 (264)
Q Consensus 167 ~l~A~aIVv~T~sG~tA~~iSr----~RP~~PIiAvT~~ 201 (264)
...++.+||-|.+|+||..+|- ..|.++.+.+||=
T Consensus 143 ~~~~DG~ivsTptGSTaY~lSaGGpiv~p~~~~l~ItPI 181 (256)
T PRK14075 143 WFFADGVVISTPTGSTAYSLSLGGPIILPNCEVFEITPI 181 (256)
T ss_pred EEecCEEEEeCCCchHHHHhhCCCceeCCCCCeEEeeee
Confidence 3568999999999999999996 4577788877764
No 168
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=57.58 E-value=97 Score=27.70 Aligned_cols=120 Identities=22% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHh
Q 024709 17 DSLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQ 96 (264)
Q Consensus 17 ~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~ 96 (264)
++++|+.+|-+.+|.-+|| -+-=.++. -||.+ .||.-|+.++++ .
T Consensus 53 ~gv~dIkai~~~v~vPIIG----IiKrd~~~----------------s~v~I------------TptlkeVd~L~~---~ 97 (229)
T COG3010 53 EGVEDIKAIRAVVDVPIIG----IIKRDYPD----------------SPVRI------------TPTLKEVDALAE---A 97 (229)
T ss_pred cchhhHHHHHhhCCCCeEE----EEecCCCC----------------CCcee------------cccHHHHHHHHH---C
Q ss_pred ccccccccccccCCCChHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcCCcEEEEE
Q 024709 97 QADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCREGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLKASALFVY 176 (264)
Q Consensus 97 g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~A~aIVv~ 176 (264)
|+|-+-+ +-..=.=|.. .+.+++.+ +++ ..++....-.++.| ...|.+++++ ||=-
T Consensus 98 Ga~IIA~--DaT~R~RP~~---~~~~~i~~-~k~-----------~~~l~MAD~St~ee------~l~a~~~G~D-~IGT 153 (229)
T COG3010 98 GADIIAF--DATDRPRPDG---DLEELIAR-IKY-----------PGQLAMADCSTFEE------GLNAHKLGFD-IIGT 153 (229)
T ss_pred CCcEEEe--ecccCCCCcc---hHHHHHHH-hhc-----------CCcEEEeccCCHHH------HHHHHHcCCc-EEec
Q ss_pred cCCchHH-------------HHHhhcCCCCcEEE
Q 024709 177 TKTGQMA-------------SLLSRSRPDCPIFA 197 (264)
Q Consensus 177 T~sG~tA-------------~~iSr~RP~~PIiA 197 (264)
|-+|+|- +.+++ +++++||
T Consensus 154 TLsGYT~~~~~~~~pDf~lvk~l~~--~~~~vIA 185 (229)
T COG3010 154 TLSGYTGYTEKPTEPDFQLVKQLSD--AGCRVIA 185 (229)
T ss_pred ccccccCCCCCCCCCcHHHHHHHHh--CCCeEEe
No 169
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=57.50 E-value=59 Score=27.43 Aligned_cols=88 Identities=15% Similarity=0.052 Sum_probs=52.0
Q ss_pred HHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHH-h-----CCCEEEEhhhhhhhhhCCCCChHHHHHHH
Q 024709 18 SLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQ-L-----NKPVIVASQLLESMIEYPIPTRAEVADVS 91 (264)
Q Consensus 18 ~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~-~-----gkpv~~atq~leSM~~~~~ptrae~~dv~ 91 (264)
..+.+.++...+|.+.++..+-|..= +..+......++..++ . ++|+.++.. -.| .++.
T Consensus 117 ~~~~~~~~~~~~d~i~~~~~~~g~tg--~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GG--------I~~-----env~ 181 (211)
T cd00429 117 PVEVLEPYLDEVDLVLVMSVNPGFGG--QKFIPEVLEKIRKLRELIPENNLNLLIEVDGG--------INL-----ETIP 181 (211)
T ss_pred CHHHHHHHHhhCCEEEEEEECCCCCC--cccCHHHHHHHHHHHHHHHhcCCCeEEEEECC--------CCH-----HHHH
Confidence 35667777777899887654433211 1221111122222222 2 478877542 122 3467
Q ss_pred HHHHhccccccccccccCCCChHHHHHHH
Q 024709 92 ELVRQQADALMLSGESAMGQFPDKALAVL 120 (264)
Q Consensus 92 ~~v~~g~d~~~ls~eta~G~yP~eav~~m 120 (264)
.+...|+|++..++....-..|.++++.+
T Consensus 182 ~~~~~gad~iivgsai~~~~~~~~~~~~~ 210 (211)
T cd00429 182 LLAEAGADVLVAGSALFGSDDYAEAIKEL 210 (211)
T ss_pred HHHHcCCCEEEECHHHhCCCCHHHHHHHh
Confidence 88889999999998877778888777654
No 170
>PRK08638 threonine dehydratase; Validated
Probab=57.50 E-value=1.2e+02 Score=28.35 Aligned_cols=120 Identities=13% Similarity=0.126 Sum_probs=71.0
Q ss_pred HHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhh
Q 024709 53 EKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCR 132 (264)
Q Consensus 53 k~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~ 132 (264)
.-+...|+..|.|+.+- .|...-...+...-..|++.+... | ...++++...+++.+- .++
T Consensus 88 ~alA~~aa~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~V~~~~-----~-~~~~~~~~a~~~a~~~-g~~- 148 (333)
T PRK08638 88 QGVALSCALLGIDGKVV-----------MPKGAPKSKVAATCGYGAEVVLHG-----D-NFNDTIAKVEEIVEEE-GRT- 148 (333)
T ss_pred HHHHHHHHHcCCCEEEE-----------eCCCCcHHHHHHHHHcCCEEEEEC-----c-CHHHHHHHHHHHHHhc-CCE-
Confidence 45667899999999983 232222233445557899987642 2 3456766666654431 111
Q ss_pred cccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHhh----cCCCCcEEEEcCCh
Q 024709 133 EGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKL-KASALFVYTKTGQMASLLSR----SRPDCPIFAFAPMS 202 (264)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l-~A~aIVv~T~sG~tA~~iSr----~RP~~PIiAvT~~~ 202 (264)
+..+... +.. .+.-..-+.++.+++ +.+.||+..-+|.+..-+++ ++|...|+++=|..
T Consensus 149 --------~~~~~~~--~~~-~~g~~t~a~Ei~~q~~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g 212 (333)
T PRK08638 149 --------FIPPYDD--PKV-IAGQGTIGLEILEDLWDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSEN 212 (333)
T ss_pred --------EcCcCCC--cch-hccccHHHHHHHhhcCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 1111111 111 111233444555554 46899999999998776665 47999999998754
No 171
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=57.34 E-value=30 Score=32.38 Aligned_cols=115 Identities=15% Similarity=0.231 Sum_probs=71.2
Q ss_pred ceEEEeccCHHHHhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEE-hhh--h-hhhhhCC-
Q 024709 7 IAVIAKIESIDSLKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVA-SQL--L-ESMIEYP- 80 (264)
Q Consensus 7 ~~iiakIE~~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~a-tq~--l-eSM~~~~- 80 (264)
+.|.--...-.-++.+.+-++. -+.||+. |-.+|.++-....|++++.|+.+|.+|=.= .++ - +......
T Consensus 75 VPValHLDHg~~~e~i~~ai~~GftSVM~D----gS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~ 150 (307)
T PRK05835 75 IPVALHLDHGTTFESCEKAVKAGFTSVMID----ASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEK 150 (307)
T ss_pred CeEEEECCCCCCHHHHHHHHHcCCCEEEEe----CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccc
Confidence 4555555555545555555555 7889998 446788899999999999999999887210 000 0 1000000
Q ss_pred CCChHHHHHHHHHHHh-ccccccccccccCCCCh-----HHHHHHHHHHHH
Q 024709 81 IPTRAEVADVSELVRQ-QADALMLSGESAMGQFP-----DKALAVLRSVSL 125 (264)
Q Consensus 81 ~ptrae~~dv~~~v~~-g~d~~~ls~eta~G~yP-----~eav~~m~~i~~ 125 (264)
.-......+...++.. |+|++-.|--|+-|.|+ .--...+.+|.+
T Consensus 151 ~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~ 201 (307)
T PRK05835 151 DAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKR 201 (307)
T ss_pred cccCCCHHHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHH
Confidence 0001112344677764 99999999999999995 234444555533
No 172
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=57.20 E-value=1.3e+02 Score=27.39 Aligned_cols=107 Identities=16% Similarity=0.246 Sum_probs=58.3
Q ss_pred cceEEEeccCHHHHhcHHHHHhh-----cceeeecC---C---Ccc-------cC----CCCCChHHHHHHHHHHHHHhC
Q 024709 6 NIAVIAKIESIDSLKNLNEIILA-----SDGAMVAR---G---DLG-------AQ----VPLEQVPSIQEKIVQLCRQLN 63 (264)
Q Consensus 6 ~~~iiakIE~~~~~~n~~eI~~~-----~Dgi~i~r---g---dL~-------~~----~~~~~v~~~qk~ii~~~~~~g 63 (264)
.+.|..||-. .+++..++++. +|+|.+.- | |+. .. -|...-+...+.+-+..+..+
T Consensus 157 ~~pv~vKi~~--~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~ 234 (300)
T TIGR01037 157 DVPVFAKLSP--NVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVD 234 (300)
T ss_pred CCCEEEECCC--ChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCC
Confidence 4678899851 23344444432 89998731 1 111 00 011122223344444444568
Q ss_pred CCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhh
Q 024709 64 KPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCR 132 (264)
Q Consensus 64 kpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~ 132 (264)
.|+|....+. .| .|+..++..|+|+||+....- ..| .+.+++.++.++++.
T Consensus 235 ipvi~~GGI~-------s~-----~da~~~l~~GAd~V~igr~~l--~~p----~~~~~i~~~l~~~~~ 285 (300)
T TIGR01037 235 IPIIGVGGIT-------SF-----EDALEFLMAGASAVQVGTAVY--YRG----FAFKKIIEGLIAFLK 285 (300)
T ss_pred CCEEEECCCC-------CH-----HHHHHHHHcCCCceeecHHHh--cCc----hHHHHHHHHHHHHHH
Confidence 9999755333 22 455788889999999974422 234 345556666666554
No 173
>PRK08639 threonine dehydratase; Validated
Probab=57.11 E-value=1.3e+02 Score=28.94 Aligned_cols=121 Identities=17% Similarity=0.278 Sum_probs=69.8
Q ss_pred HHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccc--cccccccCCCChHHHHHHHHHHHHHHHhh
Q 024709 53 EKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADAL--MLSGESAMGQFPDKALAVLRSVSLRIEKW 130 (264)
Q Consensus 53 k~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~--~ls~eta~G~yP~eav~~m~~i~~~~E~~ 130 (264)
.-+...|+..|.|+.+- .|..+-...+...-..|++.+ .+. |...-++++.-.+++++ +.
T Consensus 86 ~alA~~a~~~G~~~~Iv-----------mP~~~~~~k~~~~r~~GA~vv~v~~~-----g~~~~~a~~~a~~~a~~-~g- 147 (420)
T PRK08639 86 QGVAYACRHLGIPGVIF-----------MPVTTPQQKIDQVRFFGGEFVEIVLV-----GDTFDDSAAAAQEYAEE-TG- 147 (420)
T ss_pred HHHHHHHHHcCCCEEEE-----------ECCCChHHHHHHHHHcCCCeeEEEEe-----CcCHHHHHHHHHHHHHh-cC-
Confidence 45677899999999982 333333333455566899843 332 44445665554443322 11
Q ss_pred hhcccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcC----CcEEEEEcCCchHHHHHh----hcCCCCcEEEEcCCh
Q 024709 131 CREGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLK----ASALFVYTKTGQMASLLS----RSRPDCPIFAFAPMS 202 (264)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~----A~aIVv~T~sG~tA~~iS----r~RP~~PIiAvT~~~ 202 (264)
.++..+... + .....-..-+.++.++++ .++||+..-+|.+..-++ .++|.+.|+++-|..
T Consensus 148 --------~~~~~~~~~--~-~~~~G~~tig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~ 216 (420)
T PRK08639 148 --------ATFIPPFDD--P-DVIAGQGTVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAG 216 (420)
T ss_pred --------CcccCCCCC--h-hHhcchhHHHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECC
Confidence 111122111 1 111222333566777764 689999999998765544 457999999998754
No 174
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=57.05 E-value=1.2e+02 Score=27.35 Aligned_cols=94 Identities=16% Similarity=0.176 Sum_probs=53.7
Q ss_pred cceEEEecc--CHH-HHhcHHHHHhh-cceeeecCCCcccC--CCCCChHHHHHHHHHHHHHh-CCCEEEEhhhhhhhhh
Q 024709 6 NIAVIAKIE--SID-SLKNLNEIILA-SDGAMVARGDLGAQ--VPLEQVPSIQEKIVQLCRQL-NKPVIVASQLLESMIE 78 (264)
Q Consensus 6 ~~~iiakIE--~~~-~~~n~~eI~~~-~Dgi~i~rgdL~~~--~~~~~v~~~qk~ii~~~~~~-gkpv~~atq~leSM~~ 78 (264)
+..+++.|- +++ -.+..+.+.+. +|+|=+.=+--... -+..+-+..-.+++++.++. ++|+++= .
T Consensus 98 ~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vK--------l 169 (289)
T cd02810 98 GQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVK--------L 169 (289)
T ss_pred CCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEE--------e
Confidence 456676663 333 33444444455 78887742211000 01123456667778877775 8999972 2
Q ss_pred CCCCChHHHHHHHHH-HHhccccccccccc
Q 024709 79 YPIPTRAEVADVSEL-VRQQADALMLSGES 107 (264)
Q Consensus 79 ~~~ptrae~~dv~~~-v~~g~d~~~ls~et 107 (264)
.+..+..|..+++.. ...|+|++.+++=+
T Consensus 170 ~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~ 199 (289)
T cd02810 170 SPYFDLEDIVELAKAAERAGADGLTAINTI 199 (289)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEccc
Confidence 334455566666664 45699999997543
No 175
>PLN02591 tryptophan synthase
Probab=56.98 E-value=56 Score=29.60 Aligned_cols=73 Identities=21% Similarity=0.282 Sum_probs=48.8
Q ss_pred HhcHHHHHhhcceeee--cCCCcccCCCCCChHHHHHHHHHHHHH-hCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHH
Q 024709 19 LKNLNEIILASDGAMV--ARGDLGAQVPLEQVPSIQEKIVQLCRQ-LNKPVIVASQLLESMIEYPIPTRAEVADVSELVR 95 (264)
Q Consensus 19 ~~n~~eI~~~~Dgi~i--~rgdL~~~~~~~~v~~~qk~ii~~~~~-~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~ 95 (264)
-+++..|.+.++|.+= +| .|+.=....++...+..++.+++ .++|+.+-. ..-++. |+.....
T Consensus 144 ~~ri~~ia~~~~gFIY~Vs~--~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGF---------GI~~~e---~v~~~~~ 209 (250)
T PLN02591 144 TERMKAIAEASEGFVYLVSS--TGVTGARASVSGRVESLLQELKEVTDKPVAVGF---------GISKPE---HAKQIAG 209 (250)
T ss_pred HHHHHHHHHhCCCcEEEeeC--CCCcCCCcCCchhHHHHHHHHHhcCCCceEEeC---------CCCCHH---HHHHHHh
Confidence 4678889999877652 33 33332234566777888888887 589999844 233333 5567777
Q ss_pred hccccccccc
Q 024709 96 QQADALMLSG 105 (264)
Q Consensus 96 ~g~d~~~ls~ 105 (264)
.|+|++...+
T Consensus 210 ~GADGvIVGS 219 (250)
T PLN02591 210 WGADGVIVGS 219 (250)
T ss_pred cCCCEEEECH
Confidence 8999999874
No 176
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=56.96 E-value=26 Score=30.83 Aligned_cols=97 Identities=21% Similarity=0.239 Sum_probs=60.6
Q ss_pred HhcHHHHHhh-cceeeec--CCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHH---------
Q 024709 19 LKNLNEIILA-SDGAMVA--RGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAE--------- 86 (264)
Q Consensus 19 ~~n~~eI~~~-~Dgi~i~--rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae--------- 86 (264)
+...++.++. +|+|-+- .|.++-+- ..++.+-.+++.+.|+++|.|+|+ + +.|+..|
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~-~~~~~~~i~~v~~~~~~~gl~vIl---------E-~~l~~~~~~~~~~~~~ 147 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGN-EDEVIEEIAAVVEECHKYGLKVIL---------E-PYLRGEEVADEKKPDL 147 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTH-HHHHHHHHHHHHHHHHTSEEEEEE---------E-ECECHHHBSSTTHHHH
T ss_pred HHHHHHHHHcCCceeeeecccccccccc-HHHHHHHHHHHHHHHhcCCcEEEE---------E-EecCchhhcccccHHH
Confidence 5566666666 6766442 11111111 356777778999999999999997 3 5666666
Q ss_pred HHHHHH-HHHhccccccccccccCCCChHHHHHHHHHHHHHH
Q 024709 87 VADVSE-LVRQQADALMLSGESAMGQFPDKALAVLRSVSLRI 127 (264)
Q Consensus 87 ~~dv~~-~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~ 127 (264)
+...+. +...|+|.+=.+.=-. .....+.++.|++++..+
T Consensus 148 I~~a~ria~e~GaD~vKt~tg~~-~~~t~~~~~~~~~~~~~~ 188 (236)
T PF01791_consen 148 IARAARIAAELGADFVKTSTGKP-VGATPEDVELMRKAVEAA 188 (236)
T ss_dssp HHHHHHHHHHTT-SEEEEE-SSS-SCSHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHhCCCEEEecCCcc-ccccHHHHHHHHHHHHhc
Confidence 233333 5778999987764333 556678889998887644
No 177
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional
Probab=56.92 E-value=21 Score=38.56 Aligned_cols=64 Identities=19% Similarity=0.236 Sum_probs=56.5
Q ss_pred CcceEEEeccCHHHHhcHHHHHhh-c----------------ceeeecCCCcccCCCC----CChHHHHHHHHHHHHHhC
Q 024709 5 VNIAVIAKIESIDSLKNLNEIILA-S----------------DGAMVARGDLGAQVPL----EQVPSIQEKIVQLCRQLN 63 (264)
Q Consensus 5 ~~~~iiakIE~~~~~~n~~eI~~~-~----------------Dgi~i~rgdL~~~~~~----~~v~~~qk~ii~~~~~~g 63 (264)
..+.|+.=.||.+.++|.++|++. . =-||+|..|=+-+-|. =.+..+|.++.+.|+++|
T Consensus 577 ~~l~VvPLFETi~dL~~a~~il~~ll~~p~Yr~~l~~~~~~~qeVMlGYSDS~Kd~G~laa~w~l~~Aq~~L~~~~~~~g 656 (974)
T PTZ00398 577 KRQRVVPLLETIESLNSSSKTLEELFSNPWYLKHLKTVDNGIQEIMIGYSDSGKDGGRLTSAWELYKAQERLSNIARQYG 656 (974)
T ss_pred CCcCeeCCcCCHHHHHhHHHHHHHHHcCHHHHHHHhhccCCeEEEEEecccccccccHHHHHHHHHHHHHHHHHHHHHcC
Confidence 357899999999999999999987 1 1599999999999987 578899999999999999
Q ss_pred CCEEE
Q 024709 64 KPVIV 68 (264)
Q Consensus 64 kpv~~ 68 (264)
..+..
T Consensus 657 V~l~~ 661 (974)
T PTZ00398 657 VEIRF 661 (974)
T ss_pred CcEEE
Confidence 99886
No 178
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=56.80 E-value=82 Score=29.43 Aligned_cols=57 Identities=12% Similarity=0.211 Sum_probs=38.0
Q ss_pred CCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhcccccccccc---ccCCCChHHHHHHHHHHHHHHHhhhh
Q 024709 63 NKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGE---SAMGQFPDKALAVLRSVSLRIEKWCR 132 (264)
Q Consensus 63 gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~e---ta~G~yP~eav~~m~~i~~~~E~~~~ 132 (264)
..|+|.++.+- ...|+..++..|||+|+++.- .... =+-...+++..+..+...++.
T Consensus 255 ~ipIiasGGIr------------~~~dv~kal~lGAd~V~i~~~~L~~~~~-g~~~~~~~i~~~~~el~~~m~ 314 (326)
T cd02811 255 DLPLIASGGIR------------NGLDIAKALALGADLVGMAGPFLKAALE-GEEAVIETIEQIIEELRTAMF 314 (326)
T ss_pred CCcEEEECCCC------------CHHHHHHHHHhCCCEEEEcHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHH
Confidence 68988866433 236889999999999999852 1221 244455677777776666543
No 179
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=56.71 E-value=36 Score=30.92 Aligned_cols=77 Identities=23% Similarity=0.320 Sum_probs=51.2
Q ss_pred cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCC--CCChHHHHHHHHHHHhcccccccccc
Q 024709 29 SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYP--IPTRAEVADVSELVRQQADALMLSGE 106 (264)
Q Consensus 29 ~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~--~ptrae~~dv~~~v~~g~d~~~ls~e 106 (264)
+-.+|---.-.|.-.|+.. +...+-|++.. ..|+|| ... .|+ |.+.+...|+|+|+++.-
T Consensus 152 caavMPl~aPIGSg~G~~n-~~~l~iiie~a---~VPviV---------DAGiG~pS-----dAa~aMElG~DaVL~NTA 213 (262)
T COG2022 152 CAAVMPLGAPIGSGLGLQN-PYNLEIIIEEA---DVPVIV---------DAGIGTPS-----DAAQAMELGADAVLLNTA 213 (262)
T ss_pred ceEeccccccccCCcCcCC-HHHHHHHHHhC---CCCEEE---------eCCCCChh-----HHHHHHhcccceeehhhH
Confidence 3445544444444444433 44445555544 899998 333 444 559999999999999999
Q ss_pred ccCCCChHHHHHHHHHH
Q 024709 107 SAMGQFPDKALAVLRSV 123 (264)
Q Consensus 107 ta~G~yP~eav~~m~~i 123 (264)
.+.-+.|+.--+-|..-
T Consensus 214 iA~A~DPv~MA~Af~~A 230 (262)
T COG2022 214 IARAKDPVAMARAFALA 230 (262)
T ss_pred hhccCChHHHHHHHHHH
Confidence 99999998766666543
No 180
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=56.28 E-value=27 Score=32.33 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=68.4
Q ss_pred ceEEEeccCHHHHhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEE----EhhhhhhhhhCCC
Q 024709 7 IAVIAKIESIDSLKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIV----ASQLLESMIEYPI 81 (264)
Q Consensus 7 ~~iiakIE~~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~----atq~leSM~~~~~ 81 (264)
+.|.--...-.-++.+..-++. -+.||+.-. .+|.++-....+++++.|+..|.+|=. -..-=+..... .
T Consensus 78 vPV~lHLDHg~~~e~i~~ai~~GftSVM~DgS----~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~-~ 152 (286)
T PRK08610 78 IPVAIHLDHGSSFEKCKEAIDAGFTSVMIDAS----HSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVAD-G 152 (286)
T ss_pred CCEEEECCCCCCHHHHHHHHHcCCCEEEEeCC----CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCc-c
Confidence 3455555554444444444444 788999844 568899999999999999999988721 00000100000 0
Q ss_pred CChHHHHHHHHHHH-hccccccccccccCCCC---hHHHHHHHHHHH
Q 024709 82 PTRAEVADVSELVR-QQADALMLSGESAMGQF---PDKALAVLRSVS 124 (264)
Q Consensus 82 ptrae~~dv~~~v~-~g~d~~~ls~eta~G~y---P~eav~~m~~i~ 124 (264)
-......|...++. -|+|++-.|--|+-|.| |---.+.+.+|.
T Consensus 153 ~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~ 199 (286)
T PRK08610 153 IIYADPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIG 199 (286)
T ss_pred cccCCHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHH
Confidence 00112234466775 49999999999999999 433344455553
No 181
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=56.19 E-value=81 Score=29.16 Aligned_cols=67 Identities=19% Similarity=0.274 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChH-HHHHHHHHHHHH
Q 024709 48 VPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPD-KALAVLRSVSLR 126 (264)
Q Consensus 48 v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~-eav~~m~~i~~~ 126 (264)
...+-..+...+++++.||.+= | .+. ....++..|+..|++.||..+ ..+|. |=++.-+++.+.
T Consensus 59 ~~~~~~~~~~~A~~~~vPV~lH---L----DH~----~~~e~i~~Ai~~GftSVM~Dg----S~l~~eeNi~~T~~vve~ 123 (283)
T PRK07998 59 YDYIYEIVKRHADKMDVPVSLH---L----DHG----KTFEDVKQAVRAGFTSVMIDG----AALPFEENIAFTKEAVDF 123 (283)
T ss_pred HHHHHHHHHHHHHHCCCCEEEE---C----cCC----CCHHHHHHHHHcCCCEEEEeC----CCCCHHHHHHHHHHHHHH
Confidence 3334445555555666666651 0 111 134677889999999999964 45788 688888888887
Q ss_pred HHh
Q 024709 127 IEK 129 (264)
Q Consensus 127 ~E~ 129 (264)
|..
T Consensus 124 Ah~ 126 (283)
T PRK07998 124 AKS 126 (283)
T ss_pred HHH
Confidence 775
No 182
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed
Probab=56.15 E-value=21 Score=38.25 Aligned_cols=63 Identities=17% Similarity=0.273 Sum_probs=56.2
Q ss_pred cceEEEeccCHHHHhcHHHHHhh-c---------------ceeeecCCCcccCCCC----CChHHHHHHHHHHHHHhCCC
Q 024709 6 NIAVIAKIESIDSLKNLNEIILA-S---------------DGAMVARGDLGAQVPL----EQVPSIQEKIVQLCRQLNKP 65 (264)
Q Consensus 6 ~~~iiakIE~~~~~~n~~eI~~~-~---------------Dgi~i~rgdL~~~~~~----~~v~~~qk~ii~~~~~~gkp 65 (264)
.+.|+.=+||.+.++|.++|++. . =-||+|..|=+-+-|. =.+..+|+++.+.|+++|.+
T Consensus 522 ~l~VvPLFEti~dL~~a~~il~~l~~~p~yr~~l~~~~~~qeVMlGySDS~Kd~G~las~w~l~~Aq~~L~~~~~~~gv~ 601 (911)
T PRK00009 522 PLPVVPLFETIEDLRNAADVMRQLLSLPWYRGLIAGRGNLQEVMLGYSDSNKDGGFLASNWALYRAQEALVELAEKHGVR 601 (911)
T ss_pred CcCeECCcCCHHHHHhHHHHHHHHHcChHHHHHHhcCCCeEEEEeecccccccccHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 67899999999999999999987 1 1589999999999886 57899999999999999999
Q ss_pred EEE
Q 024709 66 VIV 68 (264)
Q Consensus 66 v~~ 68 (264)
+..
T Consensus 602 l~~ 604 (911)
T PRK00009 602 LTL 604 (911)
T ss_pred EEE
Confidence 876
No 183
>PRK15005 universal stress protein F; Provisional
Probab=55.68 E-value=31 Score=27.06 Aligned_cols=40 Identities=18% Similarity=0.385 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCcEEEEEcCC--------chHHHHHhhcCCCCcEEEE
Q 024709 158 CNGAAKIANKLKASALFVYTKT--------GQMASLLSRSRPDCPIFAF 198 (264)
Q Consensus 158 A~aAv~lA~~l~A~aIVv~T~s--------G~tA~~iSr~RP~~PIiAv 198 (264)
+....+.|.+.+++.||+-|+. |+++..+.+.-| ||++.+
T Consensus 96 ~~~I~~~a~~~~~DLIV~Gs~~~~~~~~llGS~a~~vl~~a~-cpVlvV 143 (144)
T PRK15005 96 KDRILELAKKIPADMIIIASHRPDITTYLLGSNAAAVVRHAE-CSVLVV 143 (144)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCchheeecchHHHHHHhCC-CCEEEe
Confidence 3455667899999999998764 445666655544 888875
No 184
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=55.67 E-value=68 Score=28.91 Aligned_cols=98 Identities=17% Similarity=0.179 Sum_probs=57.6
Q ss_pred cHHHHHhh-cceeeecCCCcc--cCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhc
Q 024709 21 NLNEIILA-SDGAMVARGDLG--AQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQ 97 (264)
Q Consensus 21 n~~eI~~~-~Dgi~i~rgdL~--~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g 97 (264)
+++-.++. +||+++. |--| ..+..++-..+.+.+.+.+. ...|+++.+ ....++.=+.-...|...|
T Consensus 26 ~i~~l~~~Gv~gl~v~-GstGE~~~lt~~Er~~l~~~~~~~~~-~~~~vi~gv--------~~~~~~~~~~~a~~a~~~G 95 (284)
T cd00950 26 LIEFQIENGTDGLVVC-GTTGESPTLSDEEHEAVIEAVVEAVN-GRVPVIAGT--------GSNNTAEAIELTKRAEKAG 95 (284)
T ss_pred HHHHHHHcCCCEEEEC-CCCcchhhCCHHHHHHHHHHHHHHhC-CCCcEEecc--------CCccHHHHHHHHHHHHHcC
Confidence 34555655 9999986 3332 22233444444444444442 245777633 1122332234455678889
Q ss_pred cccccccccccCCCChHHHHHHHHHHHHHHH
Q 024709 98 ADALMLSGESAMGQFPDKALAVLRSVSLRIE 128 (264)
Q Consensus 98 ~d~~~ls~eta~G~yP~eav~~m~~i~~~~E 128 (264)
+|++|+..-.-...-+-+.++..+.|+..+.
T Consensus 96 ~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~ 126 (284)
T cd00950 96 ADAALVVTPYYNKPSQEGLYAHFKAIAEATD 126 (284)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHhcCC
Confidence 9999999776555556778888888877543
No 185
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=55.65 E-value=70 Score=30.19 Aligned_cols=84 Identities=23% Similarity=0.323 Sum_probs=51.7
Q ss_pred cceEEEe-ccCHHHHhcHHHHHhh-cceeeecCCCccc--C---CCCCChHHHHHHHHHHHHH-hCCCEEEEhhhhhhhh
Q 024709 6 NIAVIAK-IESIDSLKNLNEIILA-SDGAMVARGDLGA--Q---VPLEQVPSIQEKIVQLCRQ-LNKPVIVASQLLESMI 77 (264)
Q Consensus 6 ~~~iiak-IE~~~~~~n~~eI~~~-~Dgi~i~rgdL~~--~---~~~~~v~~~qk~ii~~~~~-~gkpv~~atq~leSM~ 77 (264)
++.||++ +-|.+...++.+ . +|++.++=|.=+. + .+ ...+.+|-..+..|.+ ..+|+|....
T Consensus 140 ~~~vi~g~V~t~e~a~~l~~---aGad~i~vg~~~G~~~~t~~~~g-~~~~~w~l~ai~~~~~~~~ipVIAdGG------ 209 (326)
T PRK05458 140 ETFVIAGNVGTPEAVRELEN---AGADATKVGIGPGKVCITKIKTG-FGTGGWQLAALRWCAKAARKPIIADGG------ 209 (326)
T ss_pred CCeEEEEecCCHHHHHHHHH---cCcCEEEECCCCCcccccccccC-CCCCccHHHHHHHHHHHcCCCEEEeCC------
Confidence 3678886 888887766654 4 8999876222111 1 11 1234444434444444 4789886442
Q ss_pred hCCCCChHHHHHHHHHHHhccccccccc
Q 024709 78 EYPIPTRAEVADVSELVRQQADALMLSG 105 (264)
Q Consensus 78 ~~~~ptrae~~dv~~~v~~g~d~~~ls~ 105 (264)
.-+ -.|++.++..|+|+||+++
T Consensus 210 ---I~~---~~Di~KaLa~GA~aV~vG~ 231 (326)
T PRK05458 210 ---IRT---HGDIAKSIRFGATMVMIGS 231 (326)
T ss_pred ---CCC---HHHHHHHHHhCCCEEEech
Confidence 222 2588999999999999974
No 186
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=55.19 E-value=55 Score=30.27 Aligned_cols=75 Identities=17% Similarity=0.291 Sum_probs=52.0
Q ss_pred HHHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEE-------EhhhhhhhhhC-----CCCCh
Q 024709 17 DSLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIV-------ASQLLESMIEY-----PIPTR 84 (264)
Q Consensus 17 ~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~-------atq~leSM~~~-----~~ptr 84 (264)
.+++-++..+.-.+++.|||| ||- -|.+....+.|++-|+..++|+.+ .+|-.|-|+.. .+|.-
T Consensus 90 ~av~~i~k~L~RlhavVIGPG-LGR---dp~~~k~i~~iley~~~~dvP~VIDaDGL~Lv~q~~e~l~~~~~~viLTPNv 165 (306)
T KOG3974|consen 90 NAVDIIEKLLQRLHAVVIGPG-LGR---DPAILKEIAKILEYLRGKDVPLVIDADGLWLVEQLPERLIGGYPKVILTPNV 165 (306)
T ss_pred chHhHHHHHHhheeEEEECCC-CCC---CHHHHHHHHHHHHHHhcCCCcEEEcCCceEehhhchhhhhccCceeeeCCcH
Confidence 377778888888999999987 443 266777778899999999999986 34544433321 15556
Q ss_pred HHHHHHHHHHH
Q 024709 85 AEVADVSELVR 95 (264)
Q Consensus 85 ae~~dv~~~v~ 95 (264)
-|-.-+..++.
T Consensus 166 vEFkRLcd~~l 176 (306)
T KOG3974|consen 166 VEFKRLCDAEL 176 (306)
T ss_pred HHHHHHHHHhh
Confidence 66555555544
No 187
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=55.05 E-value=1.4e+02 Score=25.82 Aligned_cols=63 Identities=21% Similarity=0.220 Sum_probs=41.5
Q ss_pred cceeeecCCCcccCC-CCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccc
Q 024709 29 SDGAMVARGDLGAQV-PLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGES 107 (264)
Q Consensus 29 ~Dgi~i~rgdL~~~~-~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~et 107 (264)
+|.+.|. ||.... +...-....+++.+.| +.|+.+.. .. ....|+..+...|+|.++++.+.
T Consensus 42 ~~~l~v~--dl~~~~~g~~~~~~~i~~i~~~~---~~pi~~gg----------GI--~~~ed~~~~~~~Ga~~vvlgs~~ 104 (230)
T TIGR00007 42 AERIHVV--DLDGAKEGGPVNLPVIKKIVRET---GVPVQVGG----------GI--RSLEDVEKLLDLGVDRVIIGTAA 104 (230)
T ss_pred CCEEEEE--eCCccccCCCCcHHHHHHHHHhc---CCCEEEeC----------Cc--CCHHHHHHHHHcCCCEEEEChHH
Confidence 7889984 776654 4444445555555544 78999843 11 23457778888999999987654
Q ss_pred c
Q 024709 108 A 108 (264)
Q Consensus 108 a 108 (264)
.
T Consensus 105 l 105 (230)
T TIGR00007 105 V 105 (230)
T ss_pred h
Confidence 3
No 188
>PRK08198 threonine dehydratase; Provisional
Probab=54.91 E-value=1.8e+02 Score=27.75 Aligned_cols=121 Identities=13% Similarity=0.151 Sum_probs=70.7
Q ss_pred HHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhh
Q 024709 53 EKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCR 132 (264)
Q Consensus 53 k~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~ 132 (264)
.-+...|+..|.|+.+- -|.-+..+ .+...-..|++.+... + .| -++++...+++++ +.+
T Consensus 83 ~alA~~a~~~G~~~~iv---------~p~~~~~~--k~~~~~~~GA~Vi~~~-~----~~-~~~~~~a~~~~~~-~g~-- 142 (404)
T PRK08198 83 QGVAYAASLLGIKATIV---------MPETAPLS--KVKATRSYGAEVVLHG-D----VY-DEALAKAQELAEE-TGA-- 142 (404)
T ss_pred HHHHHHHHHcCCCEEEE---------ECCCCCHH--HHHHHHhCCCEEEEEC-C----CH-HHHHHHHHHHHHh-cCC--
Confidence 45667899999999983 13333222 2345556899887653 1 23 4565554444332 111
Q ss_pred cccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcC-CcEEEEEcCCchHHHHH----hhcCCCCcEEEEcCChh
Q 024709 133 EGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLK-ASALFVYTKTGQMASLL----SRSRPDCPIFAFAPMSS 203 (264)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~-A~aIVv~T~sG~tA~~i----Sr~RP~~PIiAvT~~~~ 203 (264)
++..+... + ...+.-..-+.++.++++ .++||+..-+|.+.--+ ..+.|+..||++-+...
T Consensus 143 -------~~~~~~~~--~-~~~~g~~t~a~EI~~q~~~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~ 208 (404)
T PRK08198 143 -------TFVHPFDD--P-DVIAGQGTIGLEILEDLPDVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGA 208 (404)
T ss_pred -------EecCCCCC--c-cHHHHHHHHHHHHHHhCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCC
Confidence 11122111 1 112233344566666664 58899999999976544 45789999999998654
No 189
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=54.87 E-value=1.1e+02 Score=27.98 Aligned_cols=99 Identities=13% Similarity=0.024 Sum_probs=57.4
Q ss_pred HHHhc-HHHHHhh-cceeeecCCCcccCCCC---CChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHH-HHH
Q 024709 17 DSLKN-LNEIILA-SDGAMVARGDLGAQVPL---EQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEV-ADV 90 (264)
Q Consensus 17 ~~~~n-~~eI~~~-~Dgi~i~rgdL~~~~~~---~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~-~dv 90 (264)
+++++ ++-.++. +||+++. -.+.|... ++-..+.+..++.+. ...||++.+ ...+-.|. .-.
T Consensus 21 ~~l~~lv~~~~~~Gv~gi~v~--GstGE~~~Ls~~Er~~l~~~~~~~~~-g~~pvi~gv---------~~~~t~~ai~~a 88 (294)
T TIGR02313 21 EALRELIEFQIEGGSHAISVG--GTSGEPGSLTLEERKQAIENAIDQIA-GRIPFAPGT---------GALNHDETLELT 88 (294)
T ss_pred HHHHHHHHHHHHcCCCEEEEC--ccCcccccCCHHHHHHHHHHHHHHhC-CCCcEEEEC---------CcchHHHHHHHH
Confidence 34433 4555555 8999984 33344443 443444444444432 346887643 22333333 333
Q ss_pred HHHHHhccccccccccccCCCChHHHHHHHHHHHHHH
Q 024709 91 SELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRI 127 (264)
Q Consensus 91 ~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~ 127 (264)
-.|-..|+|++|+..=--...-+-+.+..-..|+..+
T Consensus 89 ~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~ 125 (294)
T TIGR02313 89 KFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAV 125 (294)
T ss_pred HHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhc
Confidence 4466779999999876554444567778888887765
No 190
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=54.69 E-value=48 Score=32.24 Aligned_cols=80 Identities=20% Similarity=0.279 Sum_probs=49.1
Q ss_pred EEeccCHHHHhcHHHHHhhcceeeecCCCccc-------CCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCC
Q 024709 10 IAKIESIDSLKNLNEIILASDGAMVARGDLGA-------QVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIP 82 (264)
Q Consensus 10 iakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~-------~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~p 82 (264)
..-|-|.+...++.+. =+|+|.+|=|-=+. ..|.+.+. +...+.+.+++.+.|||.... .-
T Consensus 199 ~g~V~T~e~a~~l~~a--GaD~I~vG~g~Gs~c~tr~~~g~g~p~lt-ai~~v~~~~~~~~vpVIAdGG---------I~ 266 (404)
T PRK06843 199 AGNIVTKEAALDLISV--GADCLKVGIGPGSICTTRIVAGVGVPQIT-AICDVYEVCKNTNICIIADGG---------IR 266 (404)
T ss_pred EEecCCHHHHHHHHHc--CCCEEEECCCCCcCCcceeecCCCCChHH-HHHHHHHHHhhcCCeEEEeCC---------CC
Confidence 4467777766665542 28999986433211 12223222 223345566778999997432 22
Q ss_pred ChHHHHHHHHHHHhcccccccc
Q 024709 83 TRAEVADVSELVRQQADALMLS 104 (264)
Q Consensus 83 trae~~dv~~~v~~g~d~~~ls 104 (264)
+ -.|++.|+..|||+||+.
T Consensus 267 ~---~~Di~KALalGA~aVmvG 285 (404)
T PRK06843 267 F---SGDVVKAIAAGADSVMIG 285 (404)
T ss_pred C---HHHHHHHHHcCCCEEEEc
Confidence 2 358899999999999996
No 191
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=54.66 E-value=50 Score=29.78 Aligned_cols=88 Identities=23% Similarity=0.295 Sum_probs=48.5
Q ss_pred cceEEEeccCHHHHhcHHHHHhh-----cceeeecCCCcccCC--------------CC---CChHHHHHHHHHHHHHh-
Q 024709 6 NIAVIAKIESIDSLKNLNEIILA-----SDGAMVARGDLGAQV--------------PL---EQVPSIQEKIVQLCRQL- 62 (264)
Q Consensus 6 ~~~iiakIE~~~~~~n~~eI~~~-----~Dgi~i~rgdL~~~~--------------~~---~~v~~~qk~ii~~~~~~- 62 (264)
+..|+.|+-.-...+++.++++. +|+|.+.-+-.+... +. +-.+...+.+-+..+..
T Consensus 162 ~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~ 241 (289)
T cd02810 162 DIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQ 241 (289)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcC
Confidence 35678887654444445555543 799988522111100 00 11122333333333444
Q ss_pred -CCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccc
Q 024709 63 -NKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSG 105 (264)
Q Consensus 63 -gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~ 105 (264)
+.|++....+- + ..|+..++..|+|+|++..
T Consensus 242 ~~ipiia~GGI~---------~---~~da~~~l~~GAd~V~vg~ 273 (289)
T cd02810 242 LDIPIIGVGGID---------S---GEDVLEMLMAGASAVQVAT 273 (289)
T ss_pred CCCCEEEECCCC---------C---HHHHHHHHHcCccHheEcH
Confidence 68998755332 2 2466888899999999973
No 192
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=54.56 E-value=39 Score=30.30 Aligned_cols=63 Identities=19% Similarity=0.098 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHhhcCCCCcEEEEcCChhhhhhcccccccEEEEec
Q 024709 154 PGEICNGAAKIANKLKASALFVYTKTGQMASLLSRSRPDCPIFAFAPMSSVRRRLNLQWGLVPFCLN 220 (264)
Q Consensus 154 ~~aIA~aAv~lA~~l~A~aIVv~T~sG~tA~~iSr~RP~~PIiAvT~~~~~aR~L~L~~GV~P~~~~ 220 (264)
.++||..|+.+-.+ .=.+|=.+|+|+..++++=|..++-++|++..+++.|.-..++.-++..
T Consensus 80 K~~IA~~Aa~~I~~----g~~Ifld~GsT~~~la~~L~~~~ltVvTnsl~ia~~l~~~~~~~v~l~G 142 (251)
T PRK13509 80 KVRIAKAASQLCNP----GESVVINCGSTAFLLGRELCGKPVQIITNYLPLANYLIDQEHDSVIIMG 142 (251)
T ss_pred HHHHHHHHHHhCCC----CCEEEECCcHHHHHHHHHhCCCCeEEEeCCHHHHHHHHhCCCCEEEEEC
Confidence 45677776655533 2367778899999999988877899999999999887655665555543
No 193
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=54.02 E-value=35 Score=30.71 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=43.3
Q ss_pred cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhcccccccc
Q 024709 29 SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLS 104 (264)
Q Consensus 29 ~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls 104 (264)
.|.|+|. +|=+..+....+. ++..|+..|..+++ .-|.++. .++..++..|+|+||+-
T Consensus 34 ~D~v~iD-----lEH~~~~~~~~~~-~~~a~~~~g~~~~V---------Rv~~~~~---~~i~~~Ld~Ga~gIivP 91 (249)
T TIGR02311 34 FDWLLID-----GEHAPNDVRTILS-QLQALAPYPSSPVV---------RPAIGDP---VLIKQLLDIGAQTLLVP 91 (249)
T ss_pred CCEEEEe-----ccCCCCCHHHHHH-HHHHHHhcCCCcEE---------ECCCCCH---HHHHHHhCCCCCEEEec
Confidence 8999995 2444456666666 88999999988887 3334443 48899999999999996
No 194
>PRK11761 cysM cysteine synthase B; Provisional
Probab=53.94 E-value=1.7e+02 Score=26.80 Aligned_cols=123 Identities=9% Similarity=0.083 Sum_probs=68.7
Q ss_pred HHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhh
Q 024709 53 EKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCR 132 (264)
Q Consensus 53 k~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~ 132 (264)
.-+...|+..|.|+.+- .|..+...-+...-..|++.+....+ |.|. ++.+...++.++
T Consensus 76 ~alA~~a~~~G~~~~i~-----------~p~~~~~~k~~~~~~~GA~v~~~~~~---~~~~-~~~~~a~~l~~~------ 134 (296)
T PRK11761 76 IALAMIAAIKGYRMKLI-----------MPENMSQERRAAMRAYGAELILVPKE---QGME-GARDLALQMQAE------ 134 (296)
T ss_pred HHHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCCC---CChH-HHHHHHHHHHhc------
Confidence 34567899999999983 23222223334555689998887642 3332 333332222211
Q ss_pred cccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcC--CcEEEEEcCCchHH----HHHhhcCCCCcEEEEcCCh
Q 024709 133 EGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLK--ASALFVYTKTGQMA----SLLSRSRPDCPIFAFAPMS 202 (264)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~--A~aIVv~T~sG~tA----~~iSr~RP~~PIiAvT~~~ 202 (264)
.. .++..+... +..+..-...-+.++.++++ .++||+.+-+|.+. +.+..++|...|+++-|..
T Consensus 135 -~~---~~~~~~~~n--~~~~~~~~~t~~~Ei~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~ 204 (296)
T PRK11761 135 -GE---GKVLDQFAN--PDNPLAHYETTGPEIWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEE 204 (296)
T ss_pred -cC---CEecCCCCC--hhhHHHHhhchHHHHHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 11 111122111 11110011223456666664 68999999999765 5556678999999999964
No 195
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=53.62 E-value=1.7e+02 Score=26.23 Aligned_cols=110 Identities=14% Similarity=0.011 Sum_probs=63.1
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhcccccccc------------ccccCC
Q 024709 43 VPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLS------------GESAMG 110 (264)
Q Consensus 43 ~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls------------~eta~G 110 (264)
+..+....+.++-+.+++ .+.|+++. | ..-+..|..+++..+..++|++=|+ .-.+.+
T Consensus 48 ~~~e~~~~~i~~e~~~~~-~~~~vivn------v---~~~~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll 117 (231)
T TIGR00736 48 FNLEEFNSYIIEQIKKAE-SRALVSVN------V---RFVDLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELL 117 (231)
T ss_pred cCcccHHHHHHHHHHHHh-hcCCEEEE------E---ecCCHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhc
Confidence 344556677777788886 45588872 1 2336667888899999999998875 223455
Q ss_pred CChHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcCCcEEEEEc
Q 024709 111 QFPDKALAVLRSVSLRIEKWCREGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLKASALFVYT 177 (264)
Q Consensus 111 ~yP~eav~~m~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~A~aIVv~T 177 (264)
+.|-...+.++.+- +. . ..++.+......+.-....++.+.+.++++|.+..
T Consensus 118 ~dp~~l~~iv~av~-~~----~----------~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~ 169 (231)
T TIGR00736 118 KNKELLKEFLTKMK-EL----N----------KPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDA 169 (231)
T ss_pred CCHHHHHHHHHHHH-cC----C----------CcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEee
Confidence 67765555554432 11 0 01111111111111223445667888999988754
No 196
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=53.31 E-value=27 Score=28.32 Aligned_cols=54 Identities=22% Similarity=0.281 Sum_probs=41.9
Q ss_pred HHHhcHHHHHhh-cceeeecCC--CcccCCCCCChHHHHHHHHHHHHH--hCCCEEEEh
Q 024709 17 DSLKNLNEIILA-SDGAMVARG--DLGAQVPLEQVPSIQEKIVQLCRQ--LNKPVIVAS 70 (264)
Q Consensus 17 ~~~~n~~eI~~~-~Dgi~i~rg--dL~~~~~~~~v~~~qk~ii~~~~~--~gkpv~~at 70 (264)
+..+++++++.. .|-|++.-| |+.-..+.++...-.+.+++..++ .+.+|++.|
T Consensus 36 ~~~~~l~~~~~~~pd~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~~~vi~~~ 94 (169)
T cd01828 36 GLLARLDEDVALQPKAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKHFPNIKIVVQS 94 (169)
T ss_pred HHHHHHHHHhccCCCEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 455777777643 787777555 987767778888888999999999 889999855
No 197
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=53.21 E-value=1.8e+02 Score=26.42 Aligned_cols=96 Identities=14% Similarity=0.012 Sum_probs=55.7
Q ss_pred hcHHHHHhh--cceeeecCCCcccCCCCCChHHHHHHHHHHHHH---hCCCEEEEhhhhhhhhhCCCCChHHHH-HHHHH
Q 024709 20 KNLNEIILA--SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQ---LNKPVIVASQLLESMIEYPIPTRAEVA-DVSEL 93 (264)
Q Consensus 20 ~n~~eI~~~--~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~---~gkpv~~atq~leSM~~~~~ptrae~~-dv~~~ 93 (264)
+.++-.++. +||+++. | -+.|.+.-.. +-++++++.+.+ ...|+++-+ ...+-.|.- -...+
T Consensus 25 ~~i~~l~~~~Gv~gi~~~-G-stGE~~~Lt~-~Er~~~~~~~~~~~~~~~~viagv---------~~~~~~~ai~~a~~a 92 (288)
T cd00954 25 AIVDYLIEKQGVDGLYVN-G-STGEGFLLSV-EERKQIAEIVAEAAKGKVTLIAHV---------GSLNLKESQELAKHA 92 (288)
T ss_pred HHHHHHHhcCCCCEEEEC-c-CCcCcccCCH-HHHHHHHHHHHHHhCCCCeEEecc---------CCCCHHHHHHHHHHH
Confidence 345667776 8999885 2 3334443332 223333333332 235777632 334444543 34467
Q ss_pred HHhccccccccccccCCCChHHHHHHHHHHHHHH
Q 024709 94 VRQQADALMLSGESAMGQFPDKALAVLRSVSLRI 127 (264)
Q Consensus 94 v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~ 127 (264)
...|+|++|+..--....-+-+.++....|+..+
T Consensus 93 ~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~ 126 (288)
T cd00954 93 EELGYDAISAITPFYYKFSFEEIKDYYREIIAAA 126 (288)
T ss_pred HHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhc
Confidence 8899999998765444444567778888887655
No 198
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=53.19 E-value=88 Score=28.99 Aligned_cols=81 Identities=16% Similarity=0.247 Sum_probs=50.4
Q ss_pred cceEEEeccCHHHHhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCCh
Q 024709 6 NIAVIAKIESIDSLKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTR 84 (264)
Q Consensus 6 ~~~iiakIE~~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptr 84 (264)
.+++++.+=+.+ ......+. +|+|.+--.+-|...+...-....+++.+ ..++|++.+..+-
T Consensus 109 g~~v~~~v~s~~---~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~---~~~iPviaaGGI~----------- 171 (307)
T TIGR03151 109 GVKVIPVVASVA---LAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVD---AVSIPVIAAGGIA----------- 171 (307)
T ss_pred CCEEEEEcCCHH---HHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHH---HhCCCEEEECCCC-----------
Confidence 467777776643 23333344 99999833355544443323444455543 3479999976543
Q ss_pred HHHHHHHHHHHhcccccccc
Q 024709 85 AEVADVSELVRQQADALMLS 104 (264)
Q Consensus 85 ae~~dv~~~v~~g~d~~~ls 104 (264)
.-.|++.+...|+|+|++.
T Consensus 172 -~~~~~~~al~~GA~gV~iG 190 (307)
T TIGR03151 172 -DGRGMAAAFALGAEAVQMG 190 (307)
T ss_pred -CHHHHHHHHHcCCCEeecc
Confidence 2346688888999999986
No 199
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=53.08 E-value=87 Score=29.19 Aligned_cols=89 Identities=22% Similarity=0.270 Sum_probs=48.8
Q ss_pred cceEEEec--cCHHH-HhcHHHHHhh-cceeeec----CCCcccCCCCCChHHHHHHHHHHHHH-hCCCEEEEhhhhhhh
Q 024709 6 NIAVIAKI--ESIDS-LKNLNEIILA-SDGAMVA----RGDLGAQVPLEQVPSIQEKIVQLCRQ-LNKPVIVASQLLESM 76 (264)
Q Consensus 6 ~~~iiakI--E~~~~-~~n~~eI~~~-~Dgi~i~----rgdL~~~~~~~~v~~~qk~ii~~~~~-~gkpv~~atq~leSM 76 (264)
+..++++| .+.+. .+-...+-+. +|+|-+. +++-+.. +. ..+..-.++++..++ ..+|+++=
T Consensus 101 ~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~-g~-~~~~~~~eil~~v~~~~~iPV~vK------- 171 (334)
T PRK07565 101 DIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDIS-GA-EVEQRYLDILRAVKSAVSIPVAVK------- 171 (334)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCc-cc-cHHHHHHHHHHHHHhccCCcEEEE-------
Confidence 36778887 22222 2222232233 7999883 3333221 22 222333556666654 47999982
Q ss_pred hhCCCCChHHHHHHHHHH-Hhcccccccccc
Q 024709 77 IEYPIPTRAEVADVSELV-RQQADALMLSGE 106 (264)
Q Consensus 77 ~~~~~ptrae~~dv~~~v-~~g~d~~~ls~e 106 (264)
..|...+..+++.++ ..|+|++.+++-
T Consensus 172 ---l~p~~~~~~~~a~~l~~~G~dgI~~~n~ 199 (334)
T PRK07565 172 ---LSPYFSNLANMAKRLDAAGADGLVLFNR 199 (334)
T ss_pred ---eCCCchhHHHHHHHHHHcCCCeEEEECC
Confidence 234444566676654 579999988744
No 200
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=53.01 E-value=35 Score=30.92 Aligned_cols=64 Identities=11% Similarity=0.107 Sum_probs=46.9
Q ss_pred HHHHhh--cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhcccc
Q 024709 23 NEIILA--SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADA 100 (264)
Q Consensus 23 ~eI~~~--~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~ 100 (264)
-||+.. -|.++|. +|=+.-.+..+ ..++..|+..|.++++ .-|.+ +-.++.+++..|+++
T Consensus 33 ~e~~a~~G~D~v~iD-----~EHg~~~~~~~-~~~i~a~~~~g~~~lV---------Rvp~~---~~~~i~r~LD~Ga~g 94 (256)
T PRK10558 33 TEVLGLAGFDWLVLD-----GEHAPNDVSTF-IPQLMALKGSASAPVV---------RVPTN---EPVIIKRLLDIGFYN 94 (256)
T ss_pred HHHHHhcCCCEEEEc-----cccCCCCHHHH-HHHHHHHhhcCCCcEE---------ECCCC---CHHHHHHHhCCCCCe
Confidence 345554 7999995 35555566655 4688899999999998 32333 446778899999999
Q ss_pred cccc
Q 024709 101 LMLS 104 (264)
Q Consensus 101 ~~ls 104 (264)
||+.
T Consensus 95 iivP 98 (256)
T PRK10558 95 FLIP 98 (256)
T ss_pred eeec
Confidence 9996
No 201
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=52.85 E-value=45 Score=29.71 Aligned_cols=63 Identities=14% Similarity=0.129 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHhhcCCCCcEEEEcCChhhhhhcccccccEEEEec
Q 024709 154 PGEICNGAAKIANKLKASALFVYTKTGQMASLLSRSRPDCPIFAFAPMSSVRRRLNLQWGLVPFCLN 220 (264)
Q Consensus 154 ~~aIA~aAv~lA~~l~A~aIVv~T~sG~tA~~iSr~RP~~PIiAvT~~~~~aR~L~L~~GV~P~~~~ 220 (264)
.++||..|.++-.+- + .+|=.+|.|...++++-|..++-++|++..++..|.-..++.-++..
T Consensus 80 K~~IA~~Aa~lI~~g--d--~Ifld~GtT~~~l~~~L~~~~ltVvTNs~~ia~~l~~~~~~~vil~G 142 (240)
T PRK10411 80 KADIAREALAWIEEG--M--VIALDASSTCWYLARQLPDINIQVFTNSHPICQELGKRERIQLISSG 142 (240)
T ss_pred HHHHHHHHHHhCCCC--C--EEEEcCcHHHHHHHHhhCCCCeEEEeCCHHHHHHHhcCCCCEEEEEC
Confidence 456777766655442 2 56678899999999998877899999999999988777777666554
No 202
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=52.82 E-value=79 Score=27.38 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=35.4
Q ss_pred cceeeecCCCcccCC--CCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhcccccccccc
Q 024709 29 SDGAMVARGDLGAQV--PLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGE 106 (264)
Q Consensus 29 ~Dgi~i~rgdL~~~~--~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~e 106 (264)
+|.+.+..+++...- ....-...-+++.+. .++|++.+.. .-+. .|+..+...|+|++++.+.
T Consensus 140 ~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~---~~iPvia~GG---------I~t~---~~~~~~l~~GadgV~iGsa 204 (221)
T PRK01130 140 FDFIGTTLSGYTEETKKPEEPDFALLKELLKA---VGCPVIAEGR---------INTP---EQAKKALELGAHAVVVGGA 204 (221)
T ss_pred CCEEEcCCceeecCCCCCCCcCHHHHHHHHHh---CCCCEEEECC---------CCCH---HHHHHHHHCCCCEEEEchH
Confidence 788877555443221 111112333333332 3799998552 2222 4556788899999999854
No 203
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=52.78 E-value=35 Score=31.53 Aligned_cols=102 Identities=14% Similarity=0.303 Sum_probs=66.5
Q ss_pred cceEEEeccCHHHHhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEE------Ehhhhhhhhh
Q 024709 6 NIAVIAKIESIDSLKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIV------ASQLLESMIE 78 (264)
Q Consensus 6 ~~~iiakIE~~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~------atq~leSM~~ 78 (264)
.+.|.-....-.-++.+.+-++. -+.||+.- -.+|.++-....+++++.|+..|.+|=. .++ +.-..
T Consensus 74 ~VPV~lHLDHg~~~e~i~~Ai~~GftSVM~Dg----S~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e--~~~~~ 147 (284)
T PRK09195 74 HHPLALHLDHHEKFDDIAQKVRSGVRSVMIDG----SHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQE--DDLQV 147 (284)
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCCEEEeCC----CCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcc--cCccc
Confidence 34555555555555555555555 78999984 4568899999999999999999987621 010 00000
Q ss_pred CCCC-ChHHHHHHHHHHH-hccccccccccccCCCCh
Q 024709 79 YPIP-TRAEVADVSELVR-QQADALMLSGESAMGQFP 113 (264)
Q Consensus 79 ~~~p-trae~~dv~~~v~-~g~d~~~ls~eta~G~yP 113 (264)
.... ......+...++. -|+|++-.|--|+-|.||
T Consensus 148 ~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~ 184 (284)
T PRK09195 148 DEADALYTDPAQAREFVEATGIDSLAVAIGTAHGMYK 184 (284)
T ss_pred ccccccCCCHHHHHHHHHHHCcCEEeeccCccccccC
Confidence 0000 0112234567776 499999999999999996
No 204
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=52.40 E-value=1.3e+02 Score=28.73 Aligned_cols=154 Identities=14% Similarity=0.092 Sum_probs=88.3
Q ss_pred CCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccc-------cCCCChHHH
Q 024709 44 PLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGES-------AMGQFPDKA 116 (264)
Q Consensus 44 ~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~et-------a~G~yP~ea 116 (264)
|.+.......+.++.+.+.|...-+. .+.|+-..|+-.+...|+|.+-+..-+ ..|.-+-++
T Consensus 46 G~p~~~~~~~e~i~~i~~~~~~~~i~-----------~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~ 114 (378)
T PRK11858 46 GFPAVSEDEKEAIKAIAKLGLNASIL-----------ALNRAVKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEV 114 (378)
T ss_pred eCCCcChHHHHHHHHHHhcCCCeEEE-----------EEcccCHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHH
Confidence 34444444445566666666654432 234555668888999999988775433 346667888
Q ss_pred HHHHHHHHHHHHhhhhcccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcCCcEEEEEcCCch-----HHHHHhhcCC
Q 024709 117 LAVLRSVSLRIEKWCREGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLKASALFVYTKTGQ-----MASLLSRSRP 191 (264)
Q Consensus 117 v~~m~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~A~aIVv~T~sG~-----tA~~iSr~RP 191 (264)
++.+.+.++.+...-.+- .+...+ ............++.+.+.+++.|.+..+.|. ...++...|.
T Consensus 115 l~~~~~~v~~a~~~G~~v----~~~~ed-----~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~ 185 (378)
T PRK11858 115 LERMVEAVEYAKDHGLYV----SFSAED-----ASRTDLDFLIEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVE 185 (378)
T ss_pred HHHHHHHHHHHHHCCCeE----EEEecc-----CCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHH
Confidence 888888877765421110 111111 11122445556667778889998888777786 3445554443
Q ss_pred --CCcEEEEcCChh---hhhhc-ccccccEEE
Q 024709 192 --DCPIFAFAPMSS---VRRRL-NLQWGLVPF 217 (264)
Q Consensus 192 --~~PIiAvT~~~~---~aR~L-~L~~GV~P~ 217 (264)
++||=.-++|.. +|..| .+..|+.-+
T Consensus 186 ~~~~~l~~H~Hnd~GlA~AN~laAv~aGa~~v 217 (378)
T PRK11858 186 AVDIPIEVHCHNDFGMATANALAGIEAGAKQV 217 (378)
T ss_pred hcCCeEEEEecCCcCHHHHHHHHHHHcCCCEE
Confidence 367666666542 33433 345555544
No 205
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=52.40 E-value=1.6e+02 Score=25.58 Aligned_cols=93 Identities=15% Similarity=0.214 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhc-CCcEEEEEcCCch--HHHHHh-----hc---CCCCcEEEEcCChhhh--------------hhc-
Q 024709 155 GEICNGAAKIANKL-KASALFVYTKTGQ--MASLLS-----RS---RPDCPIFAFAPMSSVR--------------RRL- 208 (264)
Q Consensus 155 ~aIA~aAv~lA~~l-~A~aIVv~T~sG~--tA~~iS-----r~---RP~~PIiAvT~~~~~a--------------R~L- 208 (264)
+.+..++-.++..+ +++-|+++-..|+ .|+-++ +| ||..|.++++.+.... |++
T Consensus 25 ~~i~~a~~~l~~~l~~~~rI~~~G~GgSa~~A~~~a~~l~~~~~~~r~gl~a~~l~~d~~~~ta~and~~~~~~f~~ql~ 104 (196)
T PRK10886 25 DAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVR 104 (196)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEECcHHHHHHHHHHHHHhccccccCCCcceEEecCcHHHHHHHhccccHHHHHHHHHH
Confidence 55666777776664 6678888887666 455554 33 9999999998766644 333
Q ss_pred -ccccccEEEEecCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEec
Q 024709 209 -NLQWGLVPFCLNFSDDMESNLNQTFSLLKARGLIKSGDLIIVVSD 253 (264)
Q Consensus 209 -~L~~GV~P~~~~~~~~~e~~i~~al~~~~~~g~~~~GD~VVvvsG 253 (264)
.+..|=.-+.+..+.+.++ +..+++.++++| -++|.++|
T Consensus 105 ~~~~~gDvli~iS~SG~s~~-v~~a~~~Ak~~G-----~~vI~IT~ 144 (196)
T PRK10886 105 ALGHAGDVLLAISTRGNSRD-IVKAVEAAVTRD-----MTIVALTG 144 (196)
T ss_pred HcCCCCCEEEEEeCCCCCHH-HHHHHHHHHHCC-----CEEEEEeC
Confidence 2344444444444433333 556778888754 46777666
No 206
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=52.33 E-value=1.3e+02 Score=26.13 Aligned_cols=113 Identities=18% Similarity=0.231 Sum_probs=60.9
Q ss_pred CCCCCChHHHHHHHHHHHHHhCCC--EEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHH
Q 024709 42 QVPLEQVPSIQEKIVQLCRQLNKP--VIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAV 119 (264)
Q Consensus 42 ~~~~~~v~~~qk~ii~~~~~~gkp--v~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~ 119 (264)
|+. .+-+...+.|-..|++++.+ ++..| ++ ...|+..++..|+|++++.+. ..+.++.
T Consensus 40 Evt-~~~~~~~~~i~~l~~~~~~~~~iGaGT-V~------------~~~~~~~a~~aGA~fivsp~~------~~~v~~~ 99 (206)
T PRK09140 40 EIP-LNSPDPFDSIAALVKALGDRALIGAGT-VL------------SPEQVDRLADAGGRLIVTPNT------DPEVIRR 99 (206)
T ss_pred EEe-CCCccHHHHHHHHHHHcCCCcEEeEEe-cC------------CHHHHHHHHHcCCCEEECCCC------CHHHHHH
Confidence 444 23445666777888888866 33322 22 234567899999999998533 2222222
Q ss_pred HHHHHHHHHhhhhcccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHh---hcCC-CCcE
Q 024709 120 LRSVSLRIEKWCREGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLKASALFVYTKTGQMASLLS---RSRP-DCPI 195 (264)
Q Consensus 120 m~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~A~aIVv~T~sG~tA~~iS---r~RP-~~PI 195 (264)
.+ +. .....+. ..+..| +..|.+.+++.|-+|-.+......+. +.-| ..|+
T Consensus 100 ~~----~~----------~~~~~~G-----~~t~~E------~~~A~~~Gad~vk~Fpa~~~G~~~l~~l~~~~~~~ipv 154 (206)
T PRK09140 100 AV----AL----------GMVVMPG-----VATPTE------AFAALRAGAQALKLFPASQLGPAGIKALRAVLPPDVPV 154 (206)
T ss_pred HH----HC----------CCcEEcc-----cCCHHH------HHHHHHcCCCEEEECCCCCCCHHHHHHHHhhcCCCCeE
Confidence 11 11 1111111 122223 35567789997776664433344443 3333 6999
Q ss_pred EEEc
Q 024709 196 FAFA 199 (264)
Q Consensus 196 iAvT 199 (264)
+++-
T Consensus 155 vaiG 158 (206)
T PRK09140 155 FAVG 158 (206)
T ss_pred EEEC
Confidence 9976
No 207
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=52.24 E-value=1.5e+02 Score=27.04 Aligned_cols=63 Identities=14% Similarity=0.221 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhh
Q 024709 52 QEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWC 131 (264)
Q Consensus 52 qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~ 131 (264)
.+.+-+..+..+.|++....+. + ..|+..++..|+|+|++..---. -| .+.+++.+.-+.|+
T Consensus 223 l~~v~~i~~~~~ipvi~~GGI~---------~---~~da~~~l~aGAd~V~igr~ll~--~P----~~~~~i~~~l~~~~ 284 (301)
T PRK07259 223 LRMVYQVYQAVDIPIIGMGGIS---------S---AEDAIEFIMAGASAVQVGTANFY--DP----YAFPKIIEGLEAYL 284 (301)
T ss_pred HHHHHHHHHhCCCCEEEECCCC---------C---HHHHHHHHHcCCCceeEcHHHhc--Cc----HHHHHHHHHHHHHH
Confidence 3333333444589999855322 2 24557888899999999755433 34 45666666666665
Q ss_pred h
Q 024709 132 R 132 (264)
Q Consensus 132 ~ 132 (264)
.
T Consensus 285 ~ 285 (301)
T PRK07259 285 D 285 (301)
T ss_pred H
Confidence 4
No 208
>PRK06382 threonine dehydratase; Provisional
Probab=51.99 E-value=1.9e+02 Score=27.82 Aligned_cols=120 Identities=13% Similarity=0.091 Sum_probs=71.4
Q ss_pred HHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhhc
Q 024709 54 KIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCRE 133 (264)
Q Consensus 54 ~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~~ 133 (264)
-+...|+..|.|+.+- .|..+-...+...-..|++.+.. ++ ..-++.+...++.++ +.+
T Consensus 87 a~A~aa~~~G~~~~iv-----------mp~~~~~~k~~~~~~~GA~Vv~~-~~-----~~~~a~~~a~~la~~-~~~--- 145 (406)
T PRK06382 87 GVAYAASINGIDAKIV-----------MPEYTIPQKVNAVEAYGAHVILT-GR-----DYDEAHRYADKIAMD-ENR--- 145 (406)
T ss_pred HHHHHHHHcCCCEEEE-----------EcCCCHHHHHHHHHHcCCEEEEE-CC-----CHHHHHHHHHHHHHh-cCC---
Confidence 3677899999999983 33333223344455789987643 32 234565555544332 111
Q ss_pred ccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcC-CcEEEEEcCCchHHHHHh----hcCCCCcEEEEcCChh
Q 024709 134 GKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLK-ASALFVYTKTGQMASLLS----RSRPDCPIFAFAPMSS 203 (264)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~-A~aIVv~T~sG~tA~~iS----r~RP~~PIiAvT~~~~ 203 (264)
++..+... + ...+.-..-+.++.++++ .++||+..-+|.+..-++ ...|.+.|+++-+...
T Consensus 146 ------~~v~~~~~--~-~~i~g~~t~~~Ei~eq~~~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~ 211 (406)
T PRK06382 146 ------TFIEAFND--R-WVISGQGTIGLEIMEDLPDLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELS 211 (406)
T ss_pred ------EecCccCC--h-HHHHHHHHHHHHHHHhcCCCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 11122111 1 122333445667777774 589999999999766555 4589999999998654
No 209
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=51.86 E-value=37 Score=26.98 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=32.9
Q ss_pred HHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEh
Q 024709 18 SLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVAS 70 (264)
Q Consensus 18 ~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~at 70 (264)
.-+++++.++-.|.|+.+-.+ ......+-+.|+++|+|+|.+.
T Consensus 82 ~~~~~~~~~~~~d~vi~~~d~----------~~~~~~l~~~~~~~~~p~i~~~ 124 (135)
T PF00899_consen 82 DEENIEELLKDYDIVIDCVDS----------LAARLLLNEICREYGIPFIDAG 124 (135)
T ss_dssp SHHHHHHHHHTSSEEEEESSS----------HHHHHHHHHHHHHTT-EEEEEE
T ss_pred ccccccccccCCCEEEEecCC----------HHHHHHHHHHHHHcCCCEEEEE
Confidence 447788888889988887444 4567788899999999999754
No 210
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=51.79 E-value=78 Score=25.00 Aligned_cols=54 Identities=26% Similarity=0.469 Sum_probs=38.3
Q ss_pred HHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHH
Q 024709 22 LNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVR 95 (264)
Q Consensus 22 ~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~ 95 (264)
++++.+. +-|+.|..|+.--++| +.+++.|++++-|++. .|...--.|+.+.+.
T Consensus 65 i~~L~~~~~agL~i~~~~~~~~iP--------~~~i~~A~~~~lPli~------------ip~~~~f~~I~~~v~ 119 (123)
T PF07905_consen 65 IRELAEKGAAGLGIKTGRYLDEIP--------EEIIELADELGLPLIE------------IPWEVPFSDITREVM 119 (123)
T ss_pred HHHHHHCCCeEEEEeccCccccCC--------HHHHHHHHHcCCCEEE------------eCCCCCHHHHHHHHH
Confidence 4555555 8899998885544555 7899999999999997 555444556665554
No 211
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=51.78 E-value=1.1e+02 Score=26.55 Aligned_cols=112 Identities=16% Similarity=0.161 Sum_probs=68.4
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHH-hccccccccccccCCCChHHHHHHHHHHH
Q 024709 46 EQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVR-QQADALMLSGESAMGQFPDKALAVLRSVS 124 (264)
Q Consensus 46 ~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~-~g~d~~~ls~eta~G~yP~eav~~m~~i~ 124 (264)
++.....+++++.++++|..+.+... ...+.+..++.+.+..+. .|+|.+.|. +|.=.-.|.+.-+..+.+-
T Consensus 104 ~~~~~~~~~~v~~ak~~g~~v~~~~~------~~~~~~~~~~~~~~~~~~~~g~~~i~l~-Dt~G~~~P~~v~~lv~~~~ 176 (237)
T PF00682_consen 104 EEALERIEEAVKYAKELGYEVAFGCE------DASRTDPEELLELAEALAEAGADIIYLA-DTVGIMTPEDVAELVRALR 176 (237)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEEEEET------TTGGSSHHHHHHHHHHHHHHT-SEEEEE-ETTS-S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCceEeCcc------ccccccHHHHHHHHHHHHHcCCeEEEee-CccCCcCHHHHHHHHHHHH
Confidence 45566778889999999999977542 334566777877777665 499999997 8888889988777766654
Q ss_pred HHHHhhhhcccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcCCcEEEEEcCCc
Q 024709 125 LRIEKWCREGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLKASALFVYTKTG 180 (264)
Q Consensus 125 ~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~A~aIVv~T~sG 180 (264)
++.-+ . .- .++.+ ++ .-+|.+-...|-+.+++. |=-|-.|
T Consensus 177 ~~~~~-~--~l---~~H~H-------nd--~Gla~An~laA~~aGa~~-id~t~~G 216 (237)
T PF00682_consen 177 EALPD-I--PL---GFHAH-------ND--LGLAVANALAALEAGADR-IDGTLGG 216 (237)
T ss_dssp HHSTT-S--EE---EEEEB-------BT--TS-HHHHHHHHHHTT-SE-EEEBGGG
T ss_pred HhccC-C--eE---EEEec-------CC--ccchhHHHHHHHHcCCCE-EEccCcc
Confidence 43221 0 00 01111 11 124556667788888884 4455444
No 212
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.68 E-value=17 Score=33.59 Aligned_cols=35 Identities=29% Similarity=0.406 Sum_probs=30.0
Q ss_pred hcCCcEEEEEcCCchHHHHHhh----cCCCCcEEEEcCC
Q 024709 167 KLKASALFVYTKTGQMASLLSR----SRPDCPIFAFAPM 201 (264)
Q Consensus 167 ~l~A~aIVv~T~sG~tA~~iSr----~RP~~PIiAvT~~ 201 (264)
...++.+|+-|.+|+||..+|- ..|.++.+.+||=
T Consensus 173 ~~~~DGlIvsTptGSTAYslSAGGPii~P~~~~~~itPI 211 (292)
T PRK03378 173 SQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPM 211 (292)
T ss_pred EEEccEEEEeCCCchHHhHhhcCCceeCCCCCeEEEEec
Confidence 3578999999999999999985 5688899998873
No 213
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=51.56 E-value=90 Score=27.90 Aligned_cols=104 Identities=10% Similarity=0.145 Sum_probs=58.6
Q ss_pred ceEEEeccCHHHHhcHHHHHhhcceeeecCCCcccCCCC------CChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCC
Q 024709 7 IAVIAKIESIDSLKNLNEIILASDGAMVARGDLGAQVPL------EQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYP 80 (264)
Q Consensus 7 ~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~------~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~ 80 (264)
..+.-+-+| .++.++.++..+|.|+| ++++-|. +....-.+++-+...++|..+.+. +. .
T Consensus 111 aGlalnP~T--~~~~l~~~l~~vD~VLv----MsV~PGf~GQ~fi~~~l~KI~~lr~~~~~~~~~~~Ie-------VD-G 176 (229)
T PRK09722 111 VGLVLNPET--PVESIKYYIHLLDKITV----MTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIE-------VD-G 176 (229)
T ss_pred EEEEeCCCC--CHHHHHHHHHhcCEEEE----EEEcCCCcchhccHHHHHHHHHHHHHHHhcCCCeEEE-------EE-C
Confidence 344455555 46889999999999998 4444432 222222233333334455444331 11 1
Q ss_pred CCChHHHHHHHHHHHhccccccccccccCC--CChHHHHHHHHHHHHHH
Q 024709 81 IPTRAEVADVSELVRQQADALMLSGESAMG--QFPDKALAVLRSVSLRI 127 (264)
Q Consensus 81 ~ptrae~~dv~~~v~~g~d~~~ls~eta~G--~yP~eav~~m~~i~~~~ 127 (264)
.=+.. -+......|+|.+.+++---.| +.|.++++.+++...++
T Consensus 177 GI~~~---~i~~~~~aGad~~V~Gss~iF~~~~d~~~~i~~l~~~~~~~ 222 (229)
T PRK09722 177 SCNQK---TYEKLMEAGADVFIVGTSGLFNLDEDIDEAWDIMTAQIEAA 222 (229)
T ss_pred CCCHH---HHHHHHHcCCCEEEEChHHHcCCCCCHHHHHHHHHHHHHHh
Confidence 11111 2245677899999887432334 35889999998765544
No 214
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=51.47 E-value=83 Score=28.66 Aligned_cols=76 Identities=16% Similarity=0.301 Sum_probs=48.0
Q ss_pred HHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHh-CCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHh
Q 024709 18 SLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQL-NKPVIVASQLLESMIEYPIPTRAEVADVSELVRQ 96 (264)
Q Consensus 18 ~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~-gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~ 96 (264)
..+.+..|++.++|.+--=+-.|+.=-...++.-.+..+++.+++ ++|+.+-- ..-+. .++......
T Consensus 156 ~~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~vGF---------GI~~~---e~~~~~~~~ 223 (263)
T CHL00200 156 SKSRIQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPIILGF---------GISTS---EQIKQIKGW 223 (263)
T ss_pred CHHHHHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEEEEC---------CcCCH---HHHHHHHhc
Confidence 467899999999976543122222211246666677778777764 88888732 22222 345667778
Q ss_pred ccccccccc
Q 024709 97 QADALMLSG 105 (264)
Q Consensus 97 g~d~~~ls~ 105 (264)
|+|++...+
T Consensus 224 GADGvVVGS 232 (263)
T CHL00200 224 NINGIVIGS 232 (263)
T ss_pred CCCEEEECH
Confidence 999998864
No 215
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=51.43 E-value=36 Score=31.35 Aligned_cols=102 Identities=17% Similarity=0.222 Sum_probs=66.7
Q ss_pred cceEEEeccCHHHHhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCC-
Q 024709 6 NIAVIAKIESIDSLKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPT- 83 (264)
Q Consensus 6 ~~~iiakIE~~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~pt- 83 (264)
.+.|.-...+-.-++.+.+-++. .+.||+---+| +.++....-+++.+.|+++|.|+-.----|.. ....|.
T Consensus 74 ~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d~s~~----~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~--~d~~~~~ 147 (281)
T PRK06806 74 KVPVAVHFDHGMTFEKIKEALEIGFTSVMFDGSHL----PLEENIQKTKEIVELAKQYGATVEAEIGRVGG--SEDGSED 147 (281)
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCCEEEEcCCCC----CHHHHHHHHHHHHHHHHHcCCeEEEEeeeECC--ccCCccc
Confidence 34555566665555666666666 88999986655 67888999999999999999998643222210 000111
Q ss_pred ----hHHHHHHHHHHH-hccccccccccccCCCCh
Q 024709 84 ----RAEVADVSELVR-QQADALMLSGESAMGQFP 113 (264)
Q Consensus 84 ----rae~~dv~~~v~-~g~d~~~ls~eta~G~yP 113 (264)
--...+...++. .|+|++-++--|..|.||
T Consensus 148 ~g~s~t~~eea~~f~~~tg~DyLAvaiG~~hg~~~ 182 (281)
T PRK06806 148 IEMLLTSTTEAKRFAEETDVDALAVAIGNAHGMYN 182 (281)
T ss_pred ccceeCCHHHHHHHHHhhCCCEEEEccCCCCCCCC
Confidence 011234455664 499999998888888886
No 216
>COG2145 ThiM Hydroxyethylthiazole kinase, sugar kinase family [Coenzyme metabolism]
Probab=51.27 E-value=29 Score=31.80 Aligned_cols=46 Identities=15% Similarity=0.304 Sum_probs=36.9
Q ss_pred HHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEE
Q 024709 18 SLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIV 68 (264)
Q Consensus 18 ~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~ 68 (264)
+.+-.+|+.+.+|+++|.=|-|. ++-....+..++.+|+.|+|+++
T Consensus 45 ~~eE~~e~~kia~AL~INIGTL~-----~~~~~~m~~A~~~An~~~~PvvL 90 (265)
T COG2145 45 APEEVEEFAKIADALLINIGTLS-----AERIQAMRAAIKAANESGKPVVL 90 (265)
T ss_pred CHHHHHHHHHhccceEEeeccCC-----hHHHHHHHHHHHHHHhcCCCEEe
Confidence 45667888889999999766663 44566778889999999999996
No 217
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=51.23 E-value=64 Score=29.81 Aligned_cols=109 Identities=18% Similarity=0.347 Sum_probs=68.3
Q ss_pred ceEEEeccCHHHHhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEE------Ehh--hhhhhh
Q 024709 7 IAVIAKIESIDSLKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIV------ASQ--LLESMI 77 (264)
Q Consensus 7 ~~iiakIE~~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~------atq--~leSM~ 77 (264)
+.|.-....-.-++.+.+=++. -+.||+.- -++|.++-....|++++.|+..|.+|=. .++ +.....
T Consensus 73 VPValHLDHg~~~e~i~~ai~~GFtSVM~Dg----S~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~ 148 (282)
T TIGR01858 73 MPLALHLDHHESLDDIRQKVHAGVRSAMIDG----SHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEE 148 (282)
T ss_pred CCEEEECCCCCCHHHHHHHHHcCCCEEeecC----CCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccc
Confidence 4455555554444444444444 78899974 4678899999999999999999998731 000 000000
Q ss_pred h--CCCCChHHHHHHHHHH-HhccccccccccccCCCCh---HHHHHHHHHHH
Q 024709 78 E--YPIPTRAEVADVSELV-RQQADALMLSGESAMGQFP---DKALAVLRSVS 124 (264)
Q Consensus 78 ~--~~~ptrae~~dv~~~v-~~g~d~~~ls~eta~G~yP---~eav~~m~~i~ 124 (264)
. ...| .+...++ .-|+|++-.|--|+-|.|+ .--...+.+|-
T Consensus 149 ~~~~T~p-----eea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~ 196 (282)
T TIGR01858 149 DALYTDP-----QEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIR 196 (282)
T ss_pred hhccCCH-----HHHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHH
Confidence 0 1122 2334555 4799999999999999995 34445555553
No 218
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=51.09 E-value=18 Score=28.14 Aligned_cols=32 Identities=22% Similarity=0.434 Sum_probs=24.9
Q ss_pred CcEEEEEcCCchHHHHH-----hhcCCCCcEEEEcCCh
Q 024709 170 ASALFVYTKTGQMASLL-----SRSRPDCPIFAFAPMS 202 (264)
Q Consensus 170 A~aIVv~T~sG~tA~~i-----Sr~RP~~PIiAvT~~~ 202 (264)
-+.+|+++.+|.+...+ +|-| ++|||++|.+.
T Consensus 48 ~d~vi~iS~sG~t~~~~~~~~~a~~~-g~~vi~iT~~~ 84 (128)
T cd05014 48 GDVVIAISNSGETDELLNLLPHLKRR-GAPIIAITGNP 84 (128)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence 47899999999976543 3444 69999999965
No 219
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=50.55 E-value=1e+02 Score=30.16 Aligned_cols=63 Identities=19% Similarity=0.184 Sum_probs=42.2
Q ss_pred cceeeecCCCcccCCCCCChHHHHHHHHHHHHHh--------CCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhcccc
Q 024709 29 SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQL--------NKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADA 100 (264)
Q Consensus 29 ~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~--------gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~ 100 (264)
+|.|.+. .|=|-+.+.......--.|.+.+.+. ..|||.|.-+- | -.+++-+...|+|+
T Consensus 178 aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~---------t---g~~vaAA~alGAd~ 244 (418)
T cd04742 178 ADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIG---------T---PEAAAAAFALGADF 244 (418)
T ss_pred CCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCC---------C---HHHHHHHHHcCCcE
Confidence 6888888 88888876433333333444443332 48999987544 2 24678999999999
Q ss_pred cccc
Q 024709 101 LMLS 104 (264)
Q Consensus 101 ~~ls 104 (264)
|.+.
T Consensus 245 V~~G 248 (418)
T cd04742 245 IVTG 248 (418)
T ss_pred Eeec
Confidence 9874
No 220
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=50.16 E-value=39 Score=27.99 Aligned_cols=52 Identities=19% Similarity=0.153 Sum_probs=35.2
Q ss_pred CCcEEEEEcCCchHHHHHhhcC-------------CCCcEEEEcCChhhhhhcccccccEEEEec
Q 024709 169 KASALFVYTKTGQMASLLSRSR-------------PDCPIFAFAPMSSVRRRLNLQWGLVPFCLN 220 (264)
Q Consensus 169 ~A~aIVv~T~sG~tA~~iSr~R-------------P~~PIiAvT~~~~~aR~L~L~~GV~P~~~~ 220 (264)
.-..+|+.+.||.|..-++.+| ...+++++|++.+..+.+.-..|..-+.++
T Consensus 73 ~~tlvi~iSkSG~T~Et~~~~~~a~~~l~~~~~~~~~~~~vaiT~~~s~l~~~a~~~~~~~~~~~ 137 (158)
T cd05015 73 ETTLFIVISKSGTTLETLANARLAREWLEEAGGDDLAKHFVAITDNGSGLLKKAGIEGLNTFEIP 137 (158)
T ss_pred ccEEEEEEECCcCCHHHHHHHHHHHHHHHHhccccccceEEEEcCCChHHHHHcCCCcceeeeCC
Confidence 4568999999999876554322 567999999998877765333333333333
No 221
>PRK08526 threonine dehydratase; Provisional
Probab=49.97 E-value=1.8e+02 Score=27.98 Aligned_cols=121 Identities=12% Similarity=0.157 Sum_probs=71.6
Q ss_pred HHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhh
Q 024709 53 EKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCR 132 (264)
Q Consensus 53 k~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~ 132 (264)
.-+...|++.|.|+.+- .|..+....+...-..|++.++. |...-++++...++.++- .+
T Consensus 81 ~avA~aa~~~Gi~~~Iv-----------mP~~~p~~k~~~~r~~GA~Vv~~------g~~~~~a~~~a~~~a~~~-g~-- 140 (403)
T PRK08526 81 QGVAISAKKFGIKAVIV-----------MPEATPLLKVSGTKALGAEVILK------GDNYDEAYAFALEYAKEN-NL-- 140 (403)
T ss_pred HHHHHHHHHcCCCEEEE-----------EcCCCCHHHHHHHHhCCCEEEEE------CCCHHHHHHHHHHHHHhc-CC--
Confidence 45677899999999882 33333334445566789988764 233556665555443221 11
Q ss_pred cccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHH----hhcCCCCcEEEEcCChh
Q 024709 133 EGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKL-KASALFVYTKTGQMASLL----SRSRPDCPIFAFAPMSS 203 (264)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l-~A~aIVv~T~sG~tA~~i----Sr~RP~~PIiAvT~~~~ 203 (264)
++..+... + .....-..-+.++.+++ +.+.||+..-+|.+.--+ ...+|.+.||++-+...
T Consensus 141 -------~~v~p~~~--~-~~i~G~gtia~EI~eq~~~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~ 206 (403)
T PRK08526 141 -------TFIHPFED--E-EVMAGQGTIALEMLDEISDLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGA 206 (403)
T ss_pred -------EeeCCCCC--H-HHHhhhHHHHHHHHHhcCCCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 11122111 1 11122233356666666 468999999999876544 45679999999988543
No 222
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=49.56 E-value=2e+02 Score=27.66 Aligned_cols=125 Identities=14% Similarity=0.158 Sum_probs=69.3
Q ss_pred HHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhhc
Q 024709 54 KIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCRE 133 (264)
Q Consensus 54 ~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~~ 133 (264)
-+...|+..|.|+.+- .|..+-..-+.+.-..|++.+... + ..-++.+...++..+ +.++..
T Consensus 127 alA~~aa~~Gi~~~Iv-----------vP~~~~~~K~~~ir~~GAeVi~~~-----~-~~~~a~~~a~~~a~~-~g~~~v 188 (396)
T TIGR03528 127 GVAWAANQLGQKSVVY-----------MPKGSAQIRLENIRAEGAECTITD-----L-NYDDAVRLAWKMAQE-NGWVMV 188 (396)
T ss_pred HHHHHHHHcCCCEEEE-----------EeCCCcHHHHHHHHhcCCEEEEEC-----C-CHHHHHHHHHHHHHh-cCcEee
Confidence 4567899999999983 232222344567778999977654 2 345677776666543 111110
Q ss_pred ccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcC------CcEEEEEcCCchHHHHHhh-----cCCCCc-EEEEcCC
Q 024709 134 GKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLK------ASALFVYTKTGQMASLLSR-----SRPDCP-IFAFAPM 201 (264)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~------A~aIVv~T~sG~tA~~iSr-----~RP~~P-IiAvT~~ 201 (264)
.. ...++. ...+.....--..-+.++.++++ .+.||+.+-+|.++-.++. ++|..| |+++-|.
T Consensus 189 ~~----~~~~~~-~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~ 263 (396)
T TIGR03528 189 QD----TAWEGY-EKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPD 263 (396)
T ss_pred cc----cccccc-ccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccC
Confidence 00 000111 11111112223345556666664 5889998888875544433 366665 8888774
No 223
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=49.53 E-value=1.5e+02 Score=27.59 Aligned_cols=91 Identities=21% Similarity=0.188 Sum_probs=50.3
Q ss_pred cceEEEec--cCHHHHhcHHHHHhh--cceeeecCCCcccC---CCCCChHHHHHHHHHHHHH-hCCCEEEEhhhhhhhh
Q 024709 6 NIAVIAKI--ESIDSLKNLNEIILA--SDGAMVARGDLGAQ---VPLEQVPSIQEKIVQLCRQ-LNKPVIVASQLLESMI 77 (264)
Q Consensus 6 ~~~iiakI--E~~~~~~n~~eI~~~--~Dgi~i~rgdL~~~---~~~~~v~~~qk~ii~~~~~-~gkpv~~atq~leSM~ 77 (264)
+..+++.| .+.+.+.+.-+.++. +|+|=+.=+=+... .+ ..++..-.++++..++ ..+|+++=
T Consensus 99 ~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g-~~~~~~~~eiv~~v~~~~~iPv~vK-------- 169 (325)
T cd04739 99 SIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDISG-AEVEQRYLDILRAVKSAVTIPVAVK-------- 169 (325)
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCccc-chHHHHHHHHHHHHHhccCCCEEEE--------
Confidence 35677777 334444343333333 68886643211000 11 1223344567776665 47999982
Q ss_pred hCCCCChHHHHHHHHH-HHhccccccccccc
Q 024709 78 EYPIPTRAEVADVSEL-VRQQADALMLSGES 107 (264)
Q Consensus 78 ~~~~ptrae~~dv~~~-v~~g~d~~~ls~et 107 (264)
..|...++.+++.+ ...|+|++.+++-+
T Consensus 170 --l~p~~~~~~~~a~~l~~~Gadgi~~~nt~ 198 (325)
T cd04739 170 --LSPFFSALAHMAKQLDAAGADGLVLFNRF 198 (325)
T ss_pred --cCCCccCHHHHHHHHHHcCCCeEEEEcCc
Confidence 24554466666664 56699999997653
No 224
>PF07075 DUF1343: Protein of unknown function (DUF1343); InterPro: IPR008302 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=49.51 E-value=31 Score=33.12 Aligned_cols=75 Identities=21% Similarity=0.298 Sum_probs=54.1
Q ss_pred HHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhcccccc
Q 024709 23 NEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALM 102 (264)
Q Consensus 23 ~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ 102 (264)
+++++-.|.+++.=-|.|+-+ ...-.--..+.++|.++|||++| | ..|-|--. ..+|+-+
T Consensus 73 ~~mL~~vDvlvfDiQDvG~R~--YTYi~Tl~~~MeAaa~~g~~vvV----L----DRPNPl~G----------~~veGp~ 132 (365)
T PF07075_consen 73 PEMLKGVDVLVFDIQDVGVRF--YTYISTLYYVMEAAAENGKPVVV----L----DRPNPLGG----------RYVEGPI 132 (365)
T ss_pred HHHHhCCCEEEEeCccCCchH--HHHHHHHHHHHHHHHHhCCeEEE----E----eCCCCCCC----------CccccCC
Confidence 577778999999877776643 34455567899999999999998 3 44444222 3466677
Q ss_pred ccc--cccCCCChHHHH
Q 024709 103 LSG--ESAMGQFPDKAL 117 (264)
Q Consensus 103 ls~--eta~G~yP~eav 117 (264)
|.. ++-+|.||+-..
T Consensus 133 l~~~~~SFvG~~~iP~r 149 (365)
T PF07075_consen 133 LDPEFRSFVGMYPIPIR 149 (365)
T ss_pred cCcccccccCCCccccc
Confidence 755 789999998544
No 225
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=49.44 E-value=1.1e+02 Score=27.16 Aligned_cols=53 Identities=19% Similarity=0.274 Sum_probs=35.0
Q ss_pred cceEEEecc-CH---HHHhcH-HHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEE
Q 024709 6 NIAVIAKIE-SI---DSLKNL-NEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIV 68 (264)
Q Consensus 6 ~~~iiakIE-~~---~~~~n~-~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~ 68 (264)
++.++.|.. ++ .|++++ ++..+. +||+++- || |. +-.++++++|+++|...++
T Consensus 76 ~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiip--Dl----~~----ee~~~~~~~~~~~g~~~i~ 134 (242)
T cd04724 76 TIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIP--DL----PP----EEAEEFREAAKEYGLDLIF 134 (242)
T ss_pred CCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEEC--CC----CH----HHHHHHHHHHHHcCCcEEE
Confidence 345556555 43 244554 444445 8999994 55 32 3567999999999987776
No 226
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=49.35 E-value=1.3e+02 Score=29.73 Aligned_cols=85 Identities=16% Similarity=0.195 Sum_probs=53.4
Q ss_pred ceEEEeccCHHHHhcH---------HHHHhh----------------cceeeecCCCcccCCCCCChHHHHHHHHHHHHH
Q 024709 7 IAVIAKIESIDSLKNL---------NEIILA----------------SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQ 61 (264)
Q Consensus 7 ~~iiakIE~~~~~~n~---------~eI~~~----------------~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~ 61 (264)
..|++|+-+++-...+ +.+.+. +|.|.+. .|=|-+.+.--....--.|++.+..
T Consensus 136 ~~ViakVsr~~vAs~f~~p~p~~~v~~L~~~G~it~eEA~~a~~~g~aD~Ivve-~EAGGHtg~~~~~~Llp~i~~lrd~ 214 (444)
T TIGR02814 136 NRLIAKVSRPEVAEAFMSPAPAHILQKLLAEGRITREEAELARRVPVADDICVE-ADSGGHTDNRPLVVLLPAIIRLRDT 214 (444)
T ss_pred ceEEEecCCHHHHHHhcCCCcHHHHHHHHHcCCCCHHHHHHHHhCCCCcEEEEe-ccCCCCCCCCcHHHHHHHHHHHHHH
Confidence 4899998887765441 222221 6888887 8888887643333444444433222
Q ss_pred ------h--CCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhcccccccc
Q 024709 62 ------L--NKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLS 104 (264)
Q Consensus 62 ------~--gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls 104 (264)
+ ..|||.|.-+- .| .+++-+...|+|+|.+.
T Consensus 215 v~~~~~y~~~VpViAAGGI~-------t~-----~~vaAAlaLGAdgV~~G 253 (444)
T TIGR02814 215 LMRRYGYRKPIRVGAAGGIG-------TP-----EAAAAAFMLGADFIVTG 253 (444)
T ss_pred HhhcccCCCCceEEEeCCCC-------CH-----HHHHHHHHcCCcEEEec
Confidence 2 35699887554 22 35688999999999873
No 227
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=49.30 E-value=1.3e+02 Score=27.43 Aligned_cols=101 Identities=14% Similarity=0.044 Sum_probs=59.9
Q ss_pred HHHHhc-HHHHHh-h-cceeeecCCCcccC---CCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHH-H
Q 024709 16 IDSLKN-LNEIIL-A-SDGAMVARGDLGAQ---VPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEV-A 88 (264)
Q Consensus 16 ~~~~~n-~~eI~~-~-~Dgi~i~rgdL~~~---~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~-~ 88 (264)
.+++++ ++-.++ . +|||+++ | -+.| +..++-..+.+.+++.++ -.+||++.+ ..++-.|. .
T Consensus 23 ~~~~~~li~~l~~~~Gv~gi~v~-G-stGE~~~Ls~eEr~~~~~~~~~~~~-~~~~viagv---------g~~~t~~ai~ 90 (293)
T PRK04147 23 EQGLRRLVRFNIEKQGIDGLYVG-G-STGEAFLLSTEEKKQVLEIVAEEAK-GKVKLIAQV---------GSVNTAEAQE 90 (293)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEC-C-CccccccCCHHHHHHHHHHHHHHhC-CCCCEEecC---------CCCCHHHHHH
Confidence 445544 466666 5 8999985 2 2223 333454455555555554 236887733 33444444 4
Q ss_pred HHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHH
Q 024709 89 DVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIE 128 (264)
Q Consensus 89 dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E 128 (264)
-...+...|+|++|+..---...-+-+.++....++..+.
T Consensus 91 ~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~ 130 (293)
T PRK04147 91 LAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSAD 130 (293)
T ss_pred HHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCC
Confidence 4456788999999998654434334566777777766543
No 228
>COG1844 Uncharacterized protein conserved in archaea [Function unknown]
Probab=49.05 E-value=11 Score=30.37 Aligned_cols=70 Identities=19% Similarity=0.229 Sum_probs=50.0
Q ss_pred CCchHHHHHHHHHH-HHhcCCcEEE-EEcCCchHHHHHhhcCCCCcEEEEcCChhhhhhcccccccEEEEec
Q 024709 151 AGIPGEICNGAAKI-ANKLKASALF-VYTKTGQMASLLSRSRPDCPIFAFAPMSSVRRRLNLQWGLVPFCLN 220 (264)
Q Consensus 151 ~~~~~aIA~aAv~l-A~~l~A~aIV-v~T~sG~tA~~iSr~RP~~PIiAvT~~~~~aR~L~L~~GV~P~~~~ 220 (264)
....+.+..+.+-- -.++++.+++ |--..+....++.+-.|++.||++++...+.+.|.=.||=+|.+-.
T Consensus 38 p~~aD~~~~~ilGe~R~k~~~aa~a~v~~~a~~aI~rIr~IHPPAHiIVIs~r~dvy~el~~~fgkl~elkg 109 (125)
T COG1844 38 PELADEILSSILGEVRKKCKVAAVAEVEEPASKAIGRIRKIHPPAHIIVISPRHDVYKELLRLFGKLPELKG 109 (125)
T ss_pred hhhHHHHHHHHHHHHhcccchhheeeecCccHHHHHHHHhcCCCceEEEeCCCchHHHHHHHHhcccHhhcc
Confidence 34556666665533 3334444333 3334566777888999999999999999999999989999998654
No 229
>PLN02727 NAD kinase
Probab=48.87 E-value=16 Score=39.18 Aligned_cols=82 Identities=23% Similarity=0.330 Sum_probs=49.7
Q ss_pred HhcCCcEEEEEcCCchHHHHHhh----cCCCCcEEEEcCChhhhhhcccccccEEEEecCCCCHHHHHH-----HH-H-H
Q 024709 166 NKLKASALFVYTKTGQMASLLSR----SRPDCPIFAFAPMSSVRRRLNLQWGLVPFCLNFSDDMESNLN-----QT-F-S 234 (264)
Q Consensus 166 ~~l~A~aIVv~T~sG~tA~~iSr----~RP~~PIiAvT~~~~~aR~L~L~~GV~P~~~~~~~~~e~~i~-----~a-l-~ 234 (264)
....++.+||-|.||+||-.+|- -.|.++.+.+||=.-- +|. ..|++++.....+-.+. .+ + -
T Consensus 859 ~tyrgDGLIVSTPTGSTAYSLSAGGPIVhP~v~aIvITPIcPH----SLs--~RPIVLp~ds~I~IkI~~~sr~~a~Ls~ 932 (986)
T PLN02727 859 TKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPH----SLS--FRPVILPDSARLELKIPDDARSNAWVSF 932 (986)
T ss_pred EEeecceEEEECCCchHHhHhhcCCceeCCCCCeEEEEecCcc----cCC--CCCEEECCCCeEEEEEccCCCCceEEEE
Confidence 34579999999999999999996 6689999999973321 111 24776654321110000 00 0 0
Q ss_pred HHHHcCCCCCCCEEEEEec
Q 024709 235 LLKARGLIKSGDLIIVVSD 253 (264)
Q Consensus 235 ~~~~~g~~~~GD~VVvvsG 253 (264)
-......+++||.|.+...
T Consensus 933 DGq~~~~L~~GD~I~Ir~S 951 (986)
T PLN02727 933 DGKRRQQLSRGDSVRISMS 951 (986)
T ss_pred CCCeeeecCCCCEEEEEEC
Confidence 0223335789998877554
No 230
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=48.81 E-value=46 Score=25.35 Aligned_cols=42 Identities=12% Similarity=0.223 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhcCCcEEEEEcCC---------chHHHHHhhcCCCCcEEEE
Q 024709 157 ICNGAAKIANKLKASALFVYTKT---------GQMASLLSRSRPDCPIFAF 198 (264)
Q Consensus 157 IA~aAv~lA~~l~A~aIVv~T~s---------G~tA~~iSr~RP~~PIiAv 198 (264)
++....+.+++.+++.||+-++. |+++..+.++-|+|||+.+
T Consensus 73 ~~~~I~~~~~~~~~dllviG~~~~~~~~~~~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 73 VAEAIVEFAREHNVTQIVVGKSRRSRWRELFRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCchHHHHhcccHHHHHHHhCCCCeEEEe
Confidence 56677778899999988888862 5678888888888999875
No 231
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=48.80 E-value=44 Score=30.12 Aligned_cols=64 Identities=11% Similarity=0.089 Sum_probs=46.7
Q ss_pred HHHHhh--cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhcccc
Q 024709 23 NEIILA--SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADA 100 (264)
Q Consensus 23 ~eI~~~--~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~ 100 (264)
-||+.. -|.++|. +|=+.-....+ ..++..|+..|.++++ ++...+-..+.+++..|+++
T Consensus 26 ~e~~a~~G~D~v~iD-----~EHg~~~~~~~-~~~~~a~~~~g~~~~V------------Rvp~~~~~~i~r~LD~Ga~g 87 (249)
T TIGR03239 26 TEVLGLAGFDWLLLD-----GEHAPNDVLTF-IPQLMALKGSASAPVV------------RPPWNEPVIIKRLLDIGFYN 87 (249)
T ss_pred HHHHHhcCCCEEEEe-----cccCCCCHHHH-HHHHHHHhhcCCCcEE------------ECCCCCHHHHHHHhcCCCCE
Confidence 455555 7999995 35555666655 4777889999999998 33333446778999999999
Q ss_pred cccc
Q 024709 101 LMLS 104 (264)
Q Consensus 101 ~~ls 104 (264)
||+.
T Consensus 88 IivP 91 (249)
T TIGR03239 88 FLIP 91 (249)
T ss_pred EEec
Confidence 9996
No 232
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=48.66 E-value=1.7e+02 Score=26.72 Aligned_cols=88 Identities=23% Similarity=0.374 Sum_probs=53.6
Q ss_pred cceEEEec--c-CHHHHhcHHHHHhh--cceeeecCC--------CcccCCCCCChHHHHHHHHHHHHH-hCCCEEEEhh
Q 024709 6 NIAVIAKI--E-SIDSLKNLNEIILA--SDGAMVARG--------DLGAQVPLEQVPSIQEKIVQLCRQ-LNKPVIVASQ 71 (264)
Q Consensus 6 ~~~iiakI--E-~~~~~~n~~eI~~~--~Dgi~i~rg--------dL~~~~~~~~v~~~qk~ii~~~~~-~gkpv~~atq 71 (264)
+..+|+.| . +++-+...-+.++. +|+|=+.=| ..|..+ .+-+..-.++++..++ .++|+.+=
T Consensus 99 ~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l--~~~~~~~~~iv~~v~~~~~~Pv~vK-- 174 (299)
T cd02940 99 DKILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAV--GQDPELVEEICRWVREAVKIPVIAK-- 174 (299)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhh--ccCHHHHHHHHHHHHHhcCCCeEEE--
Confidence 35677777 5 66655555444443 677655211 112211 1335666778888875 47999982
Q ss_pred hhhhhhhCCCCChHHHHHHHH-HHHhccccccccc
Q 024709 72 LLESMIEYPIPTRAEVADVSE-LVRQQADALMLSG 105 (264)
Q Consensus 72 ~leSM~~~~~ptrae~~dv~~-~v~~g~d~~~ls~ 105 (264)
.+|...+..+++. +...|+|++.+++
T Consensus 175 --------l~~~~~~~~~~a~~~~~~Gadgi~~~N 201 (299)
T cd02940 175 --------LTPNITDIREIARAAKEGGADGVSAIN 201 (299)
T ss_pred --------CCCCchhHHHHHHHHHHcCCCEEEEec
Confidence 3565556666666 5677999999875
No 233
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=48.49 E-value=1.7e+02 Score=26.92 Aligned_cols=83 Identities=10% Similarity=0.116 Sum_probs=47.4
Q ss_pred chHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHhhc--CCCCcEEEEcCChhh---hhhcccccccEEEEecCCCCHHH
Q 024709 153 IPGEICNGAAKIANKLKASALFVYTKTGQMASLLSRS--RPDCPIFAFAPMSSV---RRRLNLQWGLVPFCLNFSDDMES 227 (264)
Q Consensus 153 ~~~aIA~aAv~lA~~l~A~aIVv~T~sG~tA~~iSr~--RP~~PIiAvT~~~~~---aR~L~L~~GV~P~~~~~~~~~e~ 227 (264)
..+..+...+..+.+.+...||+ ..+|++++.+|.+ +...|.+.+.|..++ -..+....|..-+.++. +.++
T Consensus 54 fKdR~a~~~l~~a~~~g~~~vv~-aSsGN~g~a~A~~a~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~--~~~~ 130 (328)
T TIGR00260 54 FKDRGMAVALTKALELGNDTVLC-ASTGNTGAAAAAYAGKAGVKVVILYPAGKISLGKLAQALGYNAEVVAIDG--NFDD 130 (328)
T ss_pred hHhhhHHHHHHHHHHcCCCEEEE-eCCcHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEecC--CHHH
Confidence 34444555555555666666666 4599988877643 356788888886521 12223357888777753 3344
Q ss_pred HHHHHHHHHHH
Q 024709 228 NLNQTFSLLKA 238 (264)
Q Consensus 228 ~i~~al~~~~~ 238 (264)
..+.+.+.+.+
T Consensus 131 ~~~~~~~~~~~ 141 (328)
T TIGR00260 131 AQRLVKQLFGD 141 (328)
T ss_pred HHHHHHHHHhh
Confidence 43434444443
No 234
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=48.44 E-value=58 Score=28.08 Aligned_cols=41 Identities=24% Similarity=0.303 Sum_probs=32.1
Q ss_pred hcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEh
Q 024709 20 KNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVAS 70 (264)
Q Consensus 20 ~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~at 70 (264)
+|++++++-.|.|+.+-.. +..+..+-+.|+++++|++.+.
T Consensus 103 ~~~~~~~~~~D~Vi~~~d~----------~~~r~~l~~~~~~~~ip~i~~~ 143 (202)
T TIGR02356 103 ENLELLINNVDLVLDCTDN----------FATRYLINDACVALGTPLISAA 143 (202)
T ss_pred HHHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEEE
Confidence 5778888889988876322 4577789999999999999753
No 235
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=48.27 E-value=45 Score=29.28 Aligned_cols=75 Identities=13% Similarity=0.265 Sum_probs=52.7
Q ss_pred cCHHHHhcHHHHHhhcceeeecCCCcccCCCCCChH-------------HHHHHHHHHHHHhCCCEEEEhhhhhhhhhCC
Q 024709 14 ESIDSLKNLNEIILASDGAMVARGDLGAQVPLEQVP-------------SIQEKIVQLCRQLNKPVIVASQLLESMIEYP 80 (264)
Q Consensus 14 E~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~-------------~~qk~ii~~~~~~gkpv~~atq~leSM~~~~ 80 (264)
-|+.+++.|+++.+..+.++||=|=- +..+.+. ...+.+++.|+++|.|++=- .-
T Consensus 38 ~tp~a~~~I~~l~~~~~~~~vGAGTV---l~~e~a~~ai~aGA~FivSP~~~~~vi~~a~~~~i~~iPG---------~~ 105 (201)
T PRK06015 38 RTPAALDAIRAVAAEVEEAIVGAGTI---LNAKQFEDAAKAGSRFIVSPGTTQELLAAANDSDVPLLPG---------AA 105 (201)
T ss_pred CCccHHHHHHHHHHHCCCCEEeeEeC---cCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEeCC---------CC
Confidence 47888999999887777788886632 2222222 23468999999999999831 11
Q ss_pred CCChHHHHHHHHHHHhccccccccc
Q 024709 81 IPTRAEVADVSELVRQQADALMLSG 105 (264)
Q Consensus 81 ~ptrae~~dv~~~v~~g~d~~~ls~ 105 (264)
+| +++..|...|+|.+=+=.
T Consensus 106 Tp-----tEi~~A~~~Ga~~vK~FP 125 (201)
T PRK06015 106 TP-----SEVMALREEGYTVLKFFP 125 (201)
T ss_pred CH-----HHHHHHHHCCCCEEEECC
Confidence 33 455899999999988743
No 236
>PLN02334 ribulose-phosphate 3-epimerase
Probab=48.12 E-value=1.4e+02 Score=26.19 Aligned_cols=95 Identities=11% Similarity=0.083 Sum_probs=56.0
Q ss_pred HHhcHHHHHhh--cceeeecCCCcccCCCCCChHHHHHHHHHHHHHh--CCCEEEEhhhhhhhhhCCCCChHHHHHHHHH
Q 024709 18 SLKNLNEIILA--SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQL--NKPVIVASQLLESMIEYPIPTRAEVADVSEL 93 (264)
Q Consensus 18 ~~~n~~eI~~~--~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~--gkpv~~atq~leSM~~~~~ptrae~~dv~~~ 93 (264)
-++.+.++++. +|.|.+++-.=|.. -+..+...-.-+++.++. ++|+.+...+ .+. ++...
T Consensus 127 ~~~~~~~~~~~~~~Dyi~~~~v~pg~~--~~~~~~~~~~~i~~~~~~~~~~~I~a~GGI--------~~e-----~i~~l 191 (229)
T PLN02334 127 PVEAVEPVVEKGLVDMVLVMSVEPGFG--GQSFIPSMMDKVRALRKKYPELDIEVDGGV--------GPS-----TIDKA 191 (229)
T ss_pred CHHHHHHHHhccCCCEEEEEEEecCCC--ccccCHHHHHHHHHHHHhCCCCcEEEeCCC--------CHH-----HHHHH
Confidence 35567778888 99998864432221 122222222223333333 4676653321 222 44677
Q ss_pred HHhccccccccccccCCCChHHHHHHHHHHHHHH
Q 024709 94 VRQQADALMLSGESAMGQFPDKALAVLRSVSLRI 127 (264)
Q Consensus 94 v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~ 127 (264)
...|+|++..++.-..-..|.++++.+.+.+.++
T Consensus 192 ~~aGad~vvvgsai~~~~d~~~~~~~l~~~~~~~ 225 (229)
T PLN02334 192 AEAGANVIVAGSAVFGAPDYAEVISGLRASVEKA 225 (229)
T ss_pred HHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHHh
Confidence 7899999998877555567999999888765543
No 237
>PRK07591 threonine synthase; Validated
Probab=48.08 E-value=2.1e+02 Score=27.74 Aligned_cols=121 Identities=10% Similarity=0.117 Sum_probs=70.5
Q ss_pred HHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhh
Q 024709 53 EKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCR 132 (264)
Q Consensus 53 k~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~ 132 (264)
.-+...|+++|.|+.+- .|..+...-+......|++.+... |.| -++.+.+.+++++-+.++.
T Consensus 150 ~alA~~aa~~Gl~~~I~-----------vP~~~~~~k~~~~~~~GA~Vi~v~-----g~~-d~a~~~a~~~~~~~~~~~~ 212 (421)
T PRK07591 150 NSVAAHAARAGLDSCVF-----------IPADLEAGKIVGTLVYGPTLVAVD-----GNY-DDVNRLCSELANEHEGWGF 212 (421)
T ss_pred HHHHHHHHHcCCCEEEE-----------EcCCCCHHHHHHHHHcCCEEEEEC-----CCH-HHHHHHHHHHHHhcCCEEE
Confidence 34566778888888873 333333344566678899887664 344 3566666655432111111
Q ss_pred cccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcC---CcEEEEEcCCchHHHHHhh----c-------CCCCcEEEE
Q 024709 133 EGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLK---ASALFVYTKTGQMASLLSR----S-------RPDCPIFAF 198 (264)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~---A~aIVv~T~sG~tA~~iSr----~-------RP~~PIiAv 198 (264)
. ..+.. +. ..+--..-+.++.++++ .+.||+.+-+|.+..-+.+ + +|...|+++
T Consensus 213 ~----n~~~~-------p~-~ieG~~Tia~Ei~eQl~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~V 280 (421)
T PRK07591 213 V----NINLR-------PY-YAEGSKTLGYEVAEQLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGA 280 (421)
T ss_pred e----cCCCC-------cc-cccchHHHHHHHHHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEE
Confidence 0 00000 00 01112233567778775 5899999999998765543 3 688889999
Q ss_pred cCCh
Q 024709 199 APMS 202 (264)
Q Consensus 199 T~~~ 202 (264)
-+..
T Consensus 281 q~~g 284 (421)
T PRK07591 281 QAEG 284 (421)
T ss_pred ecCC
Confidence 8863
No 238
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=47.88 E-value=18 Score=28.08 Aligned_cols=34 Identities=12% Similarity=0.310 Sum_probs=25.8
Q ss_pred CCcEEEEEcCCchHHHHHh-----hcCCCCcEEEEcCChh
Q 024709 169 KASALFVYTKTGQMASLLS-----RSRPDCPIFAFAPMSS 203 (264)
Q Consensus 169 ~A~aIVv~T~sG~tA~~iS-----r~RP~~PIiAvT~~~~ 203 (264)
+-+.+|+++.||.+...+. |-| .+|++++|+++.
T Consensus 46 ~~d~~I~iS~sG~t~e~~~~~~~a~~~-g~~vi~iT~~~~ 84 (126)
T cd05008 46 EDTLVIAISQSGETADTLAALRLAKEK-GAKTVAITNVVG 84 (126)
T ss_pred CCcEEEEEeCCcCCHHHHHHHHHHHHc-CCeEEEEECCCC
Confidence 3468999999999876543 333 499999999754
No 239
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=47.73 E-value=13 Score=33.91 Aligned_cols=35 Identities=29% Similarity=0.429 Sum_probs=29.0
Q ss_pred HhcCCcEEEEEcCCchHHHHHhh----cCCCCcEEEEcC
Q 024709 166 NKLKASALFVYTKTGQMASLLSR----SRPDCPIFAFAP 200 (264)
Q Consensus 166 ~~l~A~aIVv~T~sG~tA~~iSr----~RP~~PIiAvT~ 200 (264)
.+..++.+++.|.+|+||..+|. ..|..+.+.+||
T Consensus 187 ~~~~~dGlivsTptGSTay~lSaGGpiv~p~~~~~~~tp 225 (285)
T PF01513_consen 187 ETYRGDGLIVSTPTGSTAYSLSAGGPIVHPGLDVIILTP 225 (285)
T ss_dssp EEEEESEEEEEETGGGGTHHHHTT--EE-TTSSEEEEEE
T ss_pred EEEEEeeeEEEecCCceEEEEecCccEeccCcceeEEEe
Confidence 34678999999999999999996 668888887775
No 240
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=47.59 E-value=17 Score=36.78 Aligned_cols=35 Identities=29% Similarity=0.442 Sum_probs=30.4
Q ss_pred HhcCCcEEEEEcCCchHHHHHhh----cCCCCcEEEEcC
Q 024709 166 NKLKASALFVYTKTGQMASLLSR----SRPDCPIFAFAP 200 (264)
Q Consensus 166 ~~l~A~aIVv~T~sG~tA~~iSr----~RP~~PIiAvT~ 200 (264)
.+..++.+|+-|.||+||..+|- ..|.++.+.+||
T Consensus 457 ~~~~~DGlivsTptGSTaYslSAGGPiv~p~~~~~~~tP 495 (569)
T PRK14076 457 EEVRADGIIISTPTGSTAYSLSAGGPIVEPTVDGFIIVP 495 (569)
T ss_pred EEEECCEEEEeCCCchHHHHhhCCCceeCCCCCeEEEEe
Confidence 45689999999999999999996 568889888887
No 241
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=47.52 E-value=87 Score=27.98 Aligned_cols=73 Identities=14% Similarity=0.089 Sum_probs=52.5
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHH-HHhccccccccccccCCCChHHHHHHHHHHH
Q 024709 46 EQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSEL-VRQQADALMLSGESAMGQFPDKALAVLRSVS 124 (264)
Q Consensus 46 ~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~-v~~g~d~~~ls~eta~G~yP~eav~~m~~i~ 124 (264)
++.....+..++.|+++|..|.+.. ....+-+..++.+++.. ...|+|.+.|. +|.=..+|.+.-+.+..+.
T Consensus 106 ~~~~~~~~~~i~~a~~~G~~v~~~~------~~~~~~~~~~~~~~~~~~~~~G~~~i~l~-DT~G~~~P~~v~~lv~~l~ 178 (259)
T cd07939 106 AWVLDQLRRLVGRAKDRGLFVSVGA------EDASRADPDFLIEFAEVAQEAGADRLRFA-DTVGILDPFTTYELIRRLR 178 (259)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEee------ccCCCCCHHHHHHHHHHHHHCCCCEEEeC-CCCCCCCHHHHHHHHHHHH
Confidence 3444566789999999999877533 13344556666666654 45699999997 8999999988777777665
Q ss_pred H
Q 024709 125 L 125 (264)
Q Consensus 125 ~ 125 (264)
+
T Consensus 179 ~ 179 (259)
T cd07939 179 A 179 (259)
T ss_pred H
Confidence 4
No 242
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=47.50 E-value=43 Score=30.50 Aligned_cols=40 Identities=13% Similarity=0.329 Sum_probs=31.8
Q ss_pred HHHHHHHHHhccccccccccccCCCC------hHHHHHHHHHHHHHHHh
Q 024709 87 VADVSELVRQQADALMLSGESAMGQF------PDKALAVLRSVSLRIEK 129 (264)
Q Consensus 87 ~~dv~~~v~~g~d~~~ls~eta~G~y------P~eav~~m~~i~~~~E~ 129 (264)
+.|.......|+|++|+.++ |++ +-|++..|..|+.+.-+
T Consensus 32 ~~ea~~l~~~GvDgiiveN~---~D~Py~~~~~~etvaaM~~i~~~v~~ 77 (254)
T PF03437_consen 32 VREAEALEEGGVDGIIVENM---GDVPYPKRVGPETVAAMARIAREVRR 77 (254)
T ss_pred HHHHHHHHHCCCCEEEEecC---CCCCccCCCCHHHHHHHHHHHHHHHH
Confidence 35677788899999999876 444 45999999999988754
No 243
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=47.41 E-value=56 Score=30.18 Aligned_cols=99 Identities=18% Similarity=0.369 Sum_probs=62.3
Q ss_pred ceEEEeccCHHHHhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEE------Ehh--hhhhh-
Q 024709 7 IAVIAKIESIDSLKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIV------ASQ--LLESM- 76 (264)
Q Consensus 7 ~~iiakIE~~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~------atq--~leSM- 76 (264)
+.|.-....-.-++.+..=++. -+.||+.-. ++|.++-....|++++.|+.+|..|=. .+. .-...
T Consensus 75 VPValHLDH~~~~e~i~~ai~~GftSVMiDgS----~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~ 150 (284)
T PRK12737 75 IPLALHLDHHEDLDDIKKKVRAGIRSVMIDGS----HLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEK 150 (284)
T ss_pred CCEEEECCCCCCHHHHHHHHHcCCCeEEecCC----CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccc
Confidence 3444444444434444444444 688999844 568899999999999999999988721 110 00000
Q ss_pred -hhCCCCChHHHHHHHHHHH-hccccccccccccCCCChH
Q 024709 77 -IEYPIPTRAEVADVSELVR-QQADALMLSGESAMGQFPD 114 (264)
Q Consensus 77 -~~~~~ptrae~~dv~~~v~-~g~d~~~ls~eta~G~yP~ 114 (264)
.....| .|...|+. -|+|++-.|--|+-|.|+-
T Consensus 151 ~~~~T~p-----eeA~~Fv~~TgvD~LAvaiGt~HG~y~~ 185 (284)
T PRK12737 151 DAMYTNP-----DAAAEFVERTGIDSLAVAIGTAHGLYKG 185 (284)
T ss_pred cccCCCH-----HHHHHHHHHhCCCEEeeccCccccccCC
Confidence 001122 23345553 7999999999999999963
No 244
>PRK08197 threonine synthase; Validated
Probab=47.38 E-value=1.8e+02 Score=27.72 Aligned_cols=70 Identities=14% Similarity=0.114 Sum_probs=43.5
Q ss_pred CCCchHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHhhc--CCCCcEEEEcCC--hhhhhhcccccccEEEEec
Q 024709 150 SAGIPGEICNGAAKIANKLKASALFVYTKTGQMASLLSRS--RPDCPIFAFAPM--SSVRRRLNLQWGLVPFCLN 220 (264)
Q Consensus 150 ~~~~~~aIA~aAv~lA~~l~A~aIVv~T~sG~tA~~iSr~--RP~~PIiAvT~~--~~~aR~L~L~~GV~P~~~~ 220 (264)
..+..+--+...+..|.+.+.+.|++.| ||+++..+|.| +-..|.+.+.|. ...-+.+...+|..-+.++
T Consensus 107 tGSfKdRga~~~i~~a~~~g~~~vv~aS-sGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~ 180 (394)
T PRK08197 107 TGSFKARGLAVGVSRAKELGVKHLAMPT-NGNAGAAWAAYAARAGIRATIFMPADAPEITRLECALAGAELYLVD 180 (394)
T ss_pred CcCcHHhHHHHHHHHHHHcCCCEEEEeC-CcHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEEC
Confidence 3455666777777778888888777665 99998877643 234555555542 2222333455676666554
No 245
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=47.11 E-value=2e+02 Score=25.39 Aligned_cols=198 Identities=15% Similarity=0.100 Sum_probs=0.0
Q ss_pred hcHHHHHhh-----cceeeecCCCcccC-CCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHH
Q 024709 20 KNLNEIILA-----SDGAMVARGDLGAQ-VPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSEL 93 (264)
Q Consensus 20 ~n~~eI~~~-----~Dgi~i~rgdL~~~-~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~ 93 (264)
.+..++++. +|.+.| -||... .+.+.-....+++.+.+ +.|+++ .----...|+..+
T Consensus 30 ~d~~~~a~~~~~~G~~~i~i--~dl~~~~~~~~~~~~~i~~i~~~~---~ipv~~------------~GGi~s~~~~~~~ 92 (253)
T PRK02083 30 GDPVELAKRYNEEGADELVF--LDITASSEGRDTMLDVVERVAEQV---FIPLTV------------GGGIRSVEDARRL 92 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEE--EeCCcccccCcchHHHHHHHHHhC---CCCEEe------------eCCCCCHHHHHHH
Q ss_pred HHhccccccccccccCCCChHHHHHHHHHHHHHH--HhhhhcccccccCCCC--CCCCCCCCCchHHHHHHHHHHHHhcC
Q 024709 94 VRQQADALMLSGESAMGQFPDKALAVLRSVSLRI--EKWCREGKQHATFEPP--PISSSVSAGIPGEICNGAAKIANKLK 169 (264)
Q Consensus 94 v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~--E~~~~~~~~~~~~~~~--~~~~~~~~~~~~aIA~aAv~lA~~l~ 169 (264)
+..|+|+++++.+ -.+-...+.++.... |+....-..+...... ...........+.-.....+.+.+.+
T Consensus 93 l~~Ga~~Viigt~------~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g 166 (253)
T PRK02083 93 LRAGADKVSINSA------AVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELG 166 (253)
T ss_pred HHcCCCEEEEChh------HhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcC
Q ss_pred CcEEEE--EcCCc-------hHHHHHhhcCCCCcEEEEc--CChhhhhhcccccccEEEEecCC-CCHHHHHHHHHHHHH
Q 024709 170 ASALFV--YTKTG-------QMASLLSRSRPDCPIFAFA--PMSSVRRRLNLQWGLVPFCLNFS-DDMESNLNQTFSLLK 237 (264)
Q Consensus 170 A~aIVv--~T~sG-------~tA~~iSr~RP~~PIiAvT--~~~~~aR~L~L~~GV~P~~~~~~-~~~e~~i~~al~~~~ 237 (264)
++.+++ .++.| .....+.+.-+ .|+|+-- .+..-...+.-.-|+..+.+... .+..-.+..+++.++
T Consensus 167 ~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~-ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~~~~~ 245 (253)
T PRK02083 167 AGEILLTSMDRDGTKNGYDLELTRAVSDAVN-VPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGELKAYLA 245 (253)
T ss_pred CCEEEEcCCcCCCCCCCcCHHHHHHHHhhCC-CCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHHHHHHH
Q ss_pred HcCC
Q 024709 238 ARGL 241 (264)
Q Consensus 238 ~~g~ 241 (264)
+.|+
T Consensus 246 ~~~~ 249 (253)
T PRK02083 246 EQGI 249 (253)
T ss_pred HCCC
No 246
>PLN02929 NADH kinase
Probab=47.08 E-value=19 Score=33.65 Aligned_cols=35 Identities=29% Similarity=0.347 Sum_probs=27.6
Q ss_pred HhcCCcEEEEEcCCchHHHHHhhcC-------CCCcEEEEcC
Q 024709 166 NKLKASALFVYTKTGQMASLLSRSR-------PDCPIFAFAP 200 (264)
Q Consensus 166 ~~l~A~aIVv~T~sG~tA~~iSr~R-------P~~PIiAvT~ 200 (264)
.+..++.+++-|.+|+||-.+|.-- |.+..+.+||
T Consensus 192 ~~~~~DGliVsTpTGSTAY~lSAGG~i~Piv~P~l~~~vltP 233 (301)
T PLN02929 192 INVRSSGLRVSTAAGSTAAMLSAGGFPMPLLSRDLQYMVREP 233 (301)
T ss_pred EEeecCcEEEeCCccHHHHHHhcCCCCCCCCCcccceEEEEe
Confidence 3457899999999999999999877 4555566554
No 247
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=46.93 E-value=52 Score=32.58 Aligned_cols=66 Identities=18% Similarity=0.411 Sum_probs=50.8
Q ss_pred eeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccc
Q 024709 31 GAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALML 103 (264)
Q Consensus 31 gi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~l 103 (264)
||.|.--.=-.++|.+....+-+++|+..++.|||.++ ..++..|...|....+.-+..--|.-.|
T Consensus 148 GiVVTTDGSi~dipRe~Y~eAEervI~ELk~igKPFvi-------llNs~~P~s~et~~L~~eL~ekY~vpVl 213 (492)
T PF09547_consen 148 GIVVTTDGSITDIPRENYVEAEERVIEELKEIGKPFVI-------LLNSTKPYSEETQELAEELEEKYDVPVL 213 (492)
T ss_pred eEEEecCCCccCCChHHHHHHHHHHHHHHHHhCCCEEE-------EEeCCCCCCHHHHHHHHHHHHHhCCcEE
Confidence 44443322234788899999999999999999999998 3466799999888888877776666555
No 248
>PRK05638 threonine synthase; Validated
Probab=46.91 E-value=1.4e+02 Score=29.03 Aligned_cols=118 Identities=10% Similarity=0.108 Sum_probs=70.6
Q ss_pred HHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhh
Q 024709 53 EKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCR 132 (264)
Q Consensus 53 k~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~ 132 (264)
.-+...|+++|.|+.+- .|..+....+...-..|++.+... |. .-++++...++.++ +.++.
T Consensus 125 ~alA~~aa~~G~~~~i~-----------vp~~~~~~k~~~~~~~GA~vi~v~-----~~-~~~~~~~a~~~~~~-~~~~~ 186 (442)
T PRK05638 125 ASVAAYSARAGKEAFVV-----------VPRKVDKGKLIQMIAFGAKIIRYG-----ES-VDEAIEYAEELARL-NGLYN 186 (442)
T ss_pred HHHHHHHHHcCCCEEEE-----------EeCCCCHHHHHHHHhcCcEEEEEC-----CC-HHHHHHHHHHHHHh-CCeEe
Confidence 34567888999999883 344444445566777899988774 33 35666665555322 11111
Q ss_pred cccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHhh----cCC-----CC-cEEEEcC
Q 024709 133 EGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLKASALFVYTKTGQMASLLSR----SRP-----DC-PIFAFAP 200 (264)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~A~aIVv~T~sG~tA~~iSr----~RP-----~~-PIiAvT~ 200 (264)
..+.. .+. ..+....-+.+++++++.+.||+.+-+|.+..-+.+ ++| +. .|+++-+
T Consensus 187 ---------~~~~~--np~-~~eG~~t~a~Ei~eq~~pD~vv~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~ 252 (442)
T PRK05638 187 ---------VTPEY--NII-GLEGQKTIAFELWEEINPTHVIVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQT 252 (442)
T ss_pred ---------cCCCC--Chh-HhhhHHHHHHHHHHHHCcCEEEEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEec
Confidence 11110 011 123334455677888889999999999998765553 334 22 5777766
No 249
>PLN02645 phosphoglycolate phosphatase
Probab=46.84 E-value=52 Score=30.27 Aligned_cols=69 Identities=20% Similarity=0.335 Sum_probs=44.5
Q ss_pred CCcceEEEeccCHHHHhcHHHHHhh-------cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhh
Q 024709 4 LVNIAVIAKIESIDSLKNLNEIILA-------SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESM 76 (264)
Q Consensus 4 ~~~~~iiakIE~~~~~~n~~eI~~~-------~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM 76 (264)
|....-++-++-....+++.+++.- .||++...+. +++. + ++.++++++.||++.++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~DGtl~~~~~-----~~~g---a-~e~l~~lr~~g~~~~~~T------ 67 (311)
T PLN02645 3 NVTPAAMAAAAQLLTLENADELIDSVETFIFDCDGVIWKGDK-----LIEG---V-PETLDMLRSMGKKLVFVT------ 67 (311)
T ss_pred cccccccccccccCCHHHHHHHHHhCCEEEEeCcCCeEeCCc-----cCcC---H-HHHHHHHHHCCCEEEEEe------
Confidence 4444455556666666677777654 5666664221 2233 2 778888999999999988
Q ss_pred hhCCCCChHHHH
Q 024709 77 IEYPIPTRAEVA 88 (264)
Q Consensus 77 ~~~~~ptrae~~ 88 (264)
+++..++.+..
T Consensus 68 -N~~~~~~~~~~ 78 (311)
T PLN02645 68 -NNSTKSRAQYG 78 (311)
T ss_pred -CCCCCCHHHHH
Confidence 66666666643
No 250
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=46.62 E-value=63 Score=28.90 Aligned_cols=80 Identities=13% Similarity=0.090 Sum_probs=47.2
Q ss_pred hcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhh-hhCCCCChHHHHH-HHHHHHh
Q 024709 20 KNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESM-IEYPIPTRAEVAD-VSELVRQ 96 (264)
Q Consensus 20 ~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM-~~~~~ptrae~~d-v~~~v~~ 96 (264)
..+++.++. +|+|-+--. .+- .+..+.....+++.+.|+++|.|+++- ++-. .+.+..+..++.. +..+...
T Consensus 94 ~~v~~al~~Ga~~v~~~~~-~g~-~~~~~~~~~~~~i~~~~~~~g~~liv~---~~~~Gvh~~~~~~~~~~~~~~~a~~~ 168 (258)
T TIGR01949 94 TTVEDAIRMGADAVSIHVN-VGS-DTEWEQIRDLGMIAEICDDWGVPLLAM---MYPRGPHIDDRDPELVAHAARLGAEL 168 (258)
T ss_pred eeHHHHHHCCCCEEEEEEe-cCC-chHHHHHHHHHHHHHHHHHcCCCEEEE---EeccCcccccccHHHHHHHHHHHHHH
Confidence 446777776 777665322 111 122345577889999999999999981 1100 0011112233444 3556789
Q ss_pred cccccccc
Q 024709 97 QADALMLS 104 (264)
Q Consensus 97 g~d~~~ls 104 (264)
|+|.+-.+
T Consensus 169 GADyikt~ 176 (258)
T TIGR01949 169 GADIVKTP 176 (258)
T ss_pred CCCEEecc
Confidence 99999975
No 251
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=46.46 E-value=38 Score=30.53 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=32.5
Q ss_pred hcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEE
Q 024709 20 KNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIV 68 (264)
Q Consensus 20 ~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~ 68 (264)
+.++++++.+|++.|+.|-|+ ++........++.|+++++|+++
T Consensus 46 ~e~~~~~~~~~alvi~~G~l~-----~~~~~~i~~~~~~a~~~~~pvVl 89 (263)
T PRK09355 46 EEAEEMAKIAGALVINIGTLT-----EERIEAMLAAGKIANEAGKPVVL 89 (263)
T ss_pred HHHHHHHHhcCceEEeCCCCC-----HHHHHHHHHHHHHHHhcCCCEEE
Confidence 456677777999999888652 34444455667789999999987
No 252
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=46.35 E-value=2.3e+02 Score=27.31 Aligned_cols=121 Identities=20% Similarity=0.218 Sum_probs=70.8
Q ss_pred HHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccc--cccccccCCCChHHHHHHHHHHHHHHHhh
Q 024709 53 EKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADAL--MLSGESAMGQFPDKALAVLRSVSLRIEKW 130 (264)
Q Consensus 53 k~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~--~ls~eta~G~yP~eav~~m~~i~~~~E~~ 130 (264)
.-+...|++.|.|+.+- .|..+...-+...-..|++.+ .+.+ ...-++++...++.++- .+
T Consensus 77 ~a~A~~a~~~G~~~~iv-----------~p~~~~~~k~~~~~~~GA~vv~v~~~g-----~~~~~a~~~a~~~~~~~-g~ 139 (409)
T TIGR02079 77 QGFAYACRHLGVHGTVF-----------MPATTPKQKIDRVKIFGGEFIEIILVG-----DTFDQCAAAAREHVEDH-GG 139 (409)
T ss_pred HHHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCCeeEEEEeC-----CCHHHHHHHHHHHHHhc-CC
Confidence 45677899999999983 333333333455667899853 3433 22345554444433221 11
Q ss_pred hhcccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHH----hhcCCCCcEEEEcCCh
Q 024709 131 CREGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLK--ASALFVYTKTGQMASLL----SRSRPDCPIFAFAPMS 202 (264)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~--A~aIVv~T~sG~tA~~i----Sr~RP~~PIiAvT~~~ 202 (264)
. +.++... + .....-..-+.++.++++ .+.||+..-+|.+.--+ ..++|...|+++-|..
T Consensus 140 -----~----~~~~~~~--~-~~~~g~~ti~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~ 205 (409)
T TIGR02079 140 -----T----FIPPFDD--P-RIIEGQGTVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEG 205 (409)
T ss_pred -----E----EeCCCCC--H-hHhhhhHHHHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCC
Confidence 1 1111111 1 112333444677888875 69999999999876544 4567999999998854
No 253
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=46.29 E-value=1.2e+02 Score=25.66 Aligned_cols=94 Identities=11% Similarity=0.058 Sum_probs=53.8
Q ss_pred ccCHHHHhcHHHHHhhcceeeecCCCcccCCC--CCChHHHHHHHHHHHHHh--CCCEEEEhhhhhhhhhCCCCChHHHH
Q 024709 13 IESIDSLKNLNEIILASDGAMVARGDLGAQVP--LEQVPSIQEKIVQLCRQL--NKPVIVASQLLESMIEYPIPTRAEVA 88 (264)
Q Consensus 13 IE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~--~~~v~~~qk~ii~~~~~~--gkpv~~atq~leSM~~~~~ptrae~~ 88 (264)
++.....+.+.++...+|.+.+..-+-|..=. .+......+++.+.+++. ++|+.++.. -.| .
T Consensus 111 ~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GG--------I~~-----e 177 (210)
T TIGR01163 111 LNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGG--------VND-----D 177 (210)
T ss_pred ECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECC--------cCH-----H
Confidence 34444577788887778998886543322111 122222333344444433 357766431 122 3
Q ss_pred HHHHHHHhccccccccccccCCCChHHHHHH
Q 024709 89 DVSELVRQQADALMLSGESAMGQFPDKALAV 119 (264)
Q Consensus 89 dv~~~v~~g~d~~~ls~eta~G~yP~eav~~ 119 (264)
++..++..|+|++.+++....-..|.++++.
T Consensus 178 nv~~l~~~gad~iivgsai~~~~d~~~~~~~ 208 (210)
T TIGR01163 178 NARELAEAGADILVAGSAIFGADDYKEVIRS 208 (210)
T ss_pred HHHHHHHcCCCEEEEChHHhCCCCHHHHHHH
Confidence 4577788999999998766555567766653
No 254
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=46.14 E-value=31 Score=31.61 Aligned_cols=79 Identities=18% Similarity=0.239 Sum_probs=49.3
Q ss_pred cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhcccccccccccc
Q 024709 29 SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESA 108 (264)
Q Consensus 29 ~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta 108 (264)
+-.||.-=.-.|.-.|+.. +...+.|++. ...||++.. ..-+ -+|++.++..|+|+|++.+-.+
T Consensus 159 c~aVMPlgsPIGSg~Gl~n-~~~l~~i~e~---~~vpVivdA---------GIgt---~sDa~~AmElGaDgVL~nSaIa 222 (267)
T CHL00162 159 CATVMPLGSPIGSGQGLQN-LLNLQIIIEN---AKIPVIIDA---------GIGT---PSEASQAMELGASGVLLNTAVA 222 (267)
T ss_pred CeEEeeccCcccCCCCCCC-HHHHHHHHHc---CCCcEEEeC---------CcCC---HHHHHHHHHcCCCEEeecceee
Confidence 4455553333333344333 3344444443 458888732 2222 3688999999999999999999
Q ss_pred CCCChHHHHHHHHHH
Q 024709 109 MGQFPDKALAVLRSV 123 (264)
Q Consensus 109 ~G~yP~eav~~m~~i 123 (264)
.-+.|++-.+-|+.-
T Consensus 223 kA~dP~~mA~a~~~A 237 (267)
T CHL00162 223 QAKNPEQMAKAMKLA 237 (267)
T ss_pred cCCCHHHHHHHHHHH
Confidence 999996655555543
No 255
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=46.11 E-value=1.4e+02 Score=25.39 Aligned_cols=93 Identities=14% Similarity=0.105 Sum_probs=52.4
Q ss_pred HHhcHHHHHhhcceeeecCCCcccCCC--CCChHHHHHHHHHHHHHhCC-C-EEEEhhhhhhhhhCCCCChHHHHHHHHH
Q 024709 18 SLKNLNEIILASDGAMVARGDLGAQVP--LEQVPSIQEKIVQLCRQLNK-P-VIVASQLLESMIEYPIPTRAEVADVSEL 93 (264)
Q Consensus 18 ~~~n~~eI~~~~Dgi~i~rgdL~~~~~--~~~v~~~qk~ii~~~~~~gk-p-v~~atq~leSM~~~~~ptrae~~dv~~~ 93 (264)
..+.+.++...+|.+.+..-+-|..-. .+......+++.+.+..++. | +.++.. -.|. ++..+
T Consensus 121 ~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GG--------I~~~-----nv~~l 187 (220)
T PRK05581 121 PLEPLEDVLDLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGG--------INAD-----NIKEC 187 (220)
T ss_pred CHHHHHHHHhhCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECC--------CCHH-----HHHHH
Confidence 466677887789988776543332221 12222233333333433333 3 334321 1222 34566
Q ss_pred HHhccccccccccccCCCChHHHHHHHHHH
Q 024709 94 VRQQADALMLSGESAMGQFPDKALAVLRSV 123 (264)
Q Consensus 94 v~~g~d~~~ls~eta~G~yP~eav~~m~~i 123 (264)
...|+|++..++.-..=..|.++++.++++
T Consensus 188 ~~~GaD~vvvgSai~~~~d~~~~~~~~~~~ 217 (220)
T PRK05581 188 AEAGADVFVAGSAVFGAPDYKEAIDSLRAE 217 (220)
T ss_pred HHcCCCEEEEChhhhCCCCHHHHHHHHHHH
Confidence 668999999987766556798888877654
No 256
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=46.06 E-value=2.3e+02 Score=25.75 Aligned_cols=90 Identities=11% Similarity=0.251 Sum_probs=57.0
Q ss_pred ceEEEeccCHHHHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHH
Q 024709 7 IAVIAKIESIDSLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAE 86 (264)
Q Consensus 7 ~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae 86 (264)
+.+++-+-+...++-++ +.+|.+-||-+++.- ..+++.+-+.||||++.|.| ..+-.|
T Consensus 92 l~~~te~~d~~~~~~l~---~~vd~~kIga~~~~n-----------~~LL~~~a~~gkPV~lk~G~--------~~s~~e 149 (266)
T PRK13398 92 LPVVTEVMDTRDVEEVA---DYADMLQIGSRNMQN-----------FELLKEVGKTKKPILLKRGM--------SATLEE 149 (266)
T ss_pred CCEEEeeCChhhHHHHH---HhCCEEEECcccccC-----------HHHHHHHhcCCCcEEEeCCC--------CCCHHH
Confidence 45666555655555444 457999998777622 44677778899999996543 345667
Q ss_pred HHHHHHHHH-hccccccccccc---cCCCChHHHHHH
Q 024709 87 VADVSELVR-QQADALMLSGES---AMGQFPDKALAV 119 (264)
Q Consensus 87 ~~dv~~~v~-~g~d~~~ls~et---a~G~yP~eav~~ 119 (264)
+-+.+..+. .|.+=++|. |. ....||.+.+.+
T Consensus 150 ~~~A~e~i~~~Gn~~i~L~-~rG~~t~~~Y~~~~vdl 185 (266)
T PRK13398 150 WLYAAEYIMSEGNENVVLC-ERGIRTFETYTRNTLDL 185 (266)
T ss_pred HHHHHHHHHhcCCCeEEEE-ECCCCCCCCCCHHHHHH
Confidence 766666555 577545553 32 345899665554
No 257
>PRK06381 threonine synthase; Validated
Probab=46.01 E-value=1.9e+02 Score=26.57 Aligned_cols=88 Identities=16% Similarity=0.162 Sum_probs=49.1
Q ss_pred CCCchHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHhhc--CCCCcEEEEcCCh--hhhhhcccccccEEEEecCCCCH
Q 024709 150 SAGIPGEICNGAAKIANKLKASALFVYTKTGQMASLLSRS--RPDCPIFAFAPMS--SVRRRLNLQWGLVPFCLNFSDDM 225 (264)
Q Consensus 150 ~~~~~~aIA~aAv~lA~~l~A~aIVv~T~sG~tA~~iSr~--RP~~PIiAvT~~~--~~aR~L~L~~GV~P~~~~~~~~~ 225 (264)
..+..+.-+...+..|.+.+.+.|++. .+|+++..+|.+ +-..|.+.+.|.. ..-.++.-.+|..-+.++. +.
T Consensus 43 tGS~K~R~a~~~l~~a~~~g~~~lv~a-SsGN~g~alA~~aa~~G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~~--~~ 119 (319)
T PRK06381 43 TGTQKDRIAEAHVRRAMRLGYSGITVG-TCGNYGASIAYFARLYGLKAVIFIPRSYSNSRVKEMEKYGAEIIYVDG--KY 119 (319)
T ss_pred ccCcHHHHHHHHHHHHHHcCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEcCC--CH
Confidence 345566777788888888888877664 589988766632 2345555555431 1222233346666555543 23
Q ss_pred HHHHHHHHHHHHHcC
Q 024709 226 ESNLNQTFSLLKARG 240 (264)
Q Consensus 226 e~~i~~al~~~~~~g 240 (264)
++.++.+.+.+.+.|
T Consensus 120 ~~~~~~a~~~~~~~~ 134 (319)
T PRK06381 120 EEAVERSRKFAKENG 134 (319)
T ss_pred HHHHHHHHHHHHHcC
Confidence 344444444444444
No 258
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=45.83 E-value=20 Score=28.13 Aligned_cols=33 Identities=6% Similarity=0.269 Sum_probs=25.6
Q ss_pred CcEEEEEcCCchHHHHH-----hhcCCCCcEEEEcCChh
Q 024709 170 ASALFVYTKTGQMASLL-----SRSRPDCPIFAFAPMSS 203 (264)
Q Consensus 170 A~aIVv~T~sG~tA~~i-----Sr~RP~~PIiAvT~~~~ 203 (264)
-+.+|++|.||.|...+ +|-+ .+|++++|+++.
T Consensus 48 ~dl~I~iS~SG~t~~~~~~~~~a~~~-g~~vi~iT~~~~ 85 (120)
T cd05710 48 KSVVILASHSGNTKETVAAAKFAKEK-GATVIGLTDDED 85 (120)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHc-CCeEEEEECCCC
Confidence 47899999999986654 3444 589999998764
No 259
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=45.30 E-value=1e+02 Score=29.23 Aligned_cols=81 Identities=20% Similarity=0.297 Sum_probs=48.5
Q ss_pred cceEEEeccCHHHHhcHHHHHhh----cceeeecCCCcccCCCC-CChHHHHHHHHHHHHHh--CCCEEEEhhhhhhhhh
Q 024709 6 NIAVIAKIESIDSLKNLNEIILA----SDGAMVARGDLGAQVPL-EQVPSIQEKIVQLCRQL--NKPVIVASQLLESMIE 78 (264)
Q Consensus 6 ~~~iiakIE~~~~~~n~~eI~~~----~Dgi~i~rgdL~~~~~~-~~v~~~qk~ii~~~~~~--gkpv~~atq~leSM~~ 78 (264)
...|+.| ++.+.++.... +|+|.+. |--|..+.. ..-..+...+.+..+.. ..|+|.+..+-
T Consensus 213 ~~PvivK-----gv~~~~dA~~a~~~G~d~I~vs-nhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr----- 281 (344)
T cd02922 213 KLPIVLK-----GVQTVEDAVLAAEYGVDGIVLS-NHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVR----- 281 (344)
T ss_pred CCcEEEE-----cCCCHHHHHHHHHcCCCEEEEE-CCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCC-----
Confidence 4567777 33445544444 8998886 333444321 22233444554444443 37888755332
Q ss_pred CCCCChHHHHHHHHHHHhcccccccc
Q 024709 79 YPIPTRAEVADVSELVRQQADALMLS 104 (264)
Q Consensus 79 ~~~ptrae~~dv~~~v~~g~d~~~ls 104 (264)
--.|++.++..|+|++.+.
T Consensus 282 -------~G~Dv~kalaLGA~aV~iG 300 (344)
T cd02922 282 -------RGTDVLKALCLGAKAVGLG 300 (344)
T ss_pred -------CHHHHHHHHHcCCCEEEEC
Confidence 2479999999999999886
No 260
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=45.30 E-value=81 Score=29.65 Aligned_cols=59 Identities=22% Similarity=0.399 Sum_probs=40.5
Q ss_pred cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEh--h-hhhhhhhCC---CCChHHHHHHHH
Q 024709 29 SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVAS--Q-LLESMIEYP---IPTRAEVADVSE 92 (264)
Q Consensus 29 ~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~at--q-~leSM~~~~---~ptrae~~dv~~ 92 (264)
.|.+.++ -++|.--=+.+..++++.|++.|+.|++-| + +++.....| .|.+-|.....+
T Consensus 130 ~d~Vvls-----GSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg~~L~~~L~~~P~lIKPN~~EL~~~~g 194 (310)
T COG1105 130 DDIVVLS-----GSLPPGVPPDAYAELIRILRQQGAKVILDTSGEALLAALEAKPWLIKPNREELEALFG 194 (310)
T ss_pred CCEEEEe-----CCCCCCCCHHHHHHHHHHHHhcCCeEEEECChHHHHHHHccCCcEEecCHHHHHHHhC
Confidence 5655544 455655556788999999999999999976 2 223333344 788888765554
No 261
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=45.08 E-value=97 Score=28.85 Aligned_cols=90 Identities=19% Similarity=0.195 Sum_probs=49.4
Q ss_pred cceEEEeccCHHHHhcHHHHHhh-----cceeee-cCC---------CcccC---C-CCCChHHHHHHHHHHHHHh--CC
Q 024709 6 NIAVIAKIESIDSLKNLNEIILA-----SDGAMV-ARG---------DLGAQ---V-PLEQVPSIQEKIVQLCRQL--NK 64 (264)
Q Consensus 6 ~~~iiakIE~~~~~~n~~eI~~~-----~Dgi~i-~rg---------dL~~~---~-~~~~v~~~qk~ii~~~~~~--gk 64 (264)
++.|++|+--....+++.++++. +|||-+ +|- .+... + |...-+...+.+-...+.. ..
T Consensus 202 ~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~i 281 (327)
T cd04738 202 KVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKI 281 (327)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCC
Confidence 47899999432222344444443 799875 321 00000 1 1122333444444444444 57
Q ss_pred CEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccc
Q 024709 65 PVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGES 107 (264)
Q Consensus 65 pv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~et 107 (264)
|++...-+- | ..|+..++..|+|+|++...-
T Consensus 282 pIi~~GGI~---------t---~~da~e~l~aGAd~V~vg~~~ 312 (327)
T cd04738 282 PIIGVGGIS---------S---GEDAYEKIRAGASLVQLYTGL 312 (327)
T ss_pred cEEEECCCC---------C---HHHHHHHHHcCCCHHhccHHH
Confidence 888755322 2 346788888999999998543
No 262
>PRK07048 serine/threonine dehydratase; Validated
Probab=44.69 E-value=1.8e+02 Score=26.77 Aligned_cols=121 Identities=17% Similarity=0.245 Sum_probs=66.6
Q ss_pred HHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhh
Q 024709 53 EKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCR 132 (264)
Q Consensus 53 k~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~ 132 (264)
.-+...|+..|.|+.+-. |..+.. .-+...-..|++.+...+ +.-++.+...++.++ .
T Consensus 85 ~alA~~a~~~G~~~~vvv---------p~~~~~--~k~~~~~~~GAeV~~~~~------~~~~~~~~a~~l~~~--~--- 142 (321)
T PRK07048 85 QAIALSARLLGIPATIVM---------PQDAPA--AKVAATRGYGGEVVTYDR------YTEDREEIGRRLAEE--R--- 142 (321)
T ss_pred HHHHHHHHHcCCCEEEEE---------CCCCCH--HHHHHHHHCCCEEEEECC------CHHHHHHHHHHHHHh--c---
Confidence 356678999999998831 222212 223455568999877653 233444333332211 0
Q ss_pred cccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHhh----cCCCCcEEEEcCChh
Q 024709 133 EGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKL-KASALFVYTKTGQMASLLSR----SRPDCPIFAFAPMSS 203 (264)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l-~A~aIVv~T~sG~tA~~iSr----~RP~~PIiAvT~~~~ 203 (264)
. .++..+... +.. ...-..-+.++.+++ +.+.||+..-+|.+.--+++ ++|...|+++-+...
T Consensus 143 --g---~~~~~~~~~--~~~-~~g~~t~~~EI~~q~~~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~~ 210 (321)
T PRK07048 143 --G---LTLIPPYDH--PHV-IAGQGTAAKELFEEVGPLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEAG 210 (321)
T ss_pred --C---CEEECCCCC--cch-hhccchHHHHHHhhcCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCCC
Confidence 0 011111111 111 111123334566665 35899999999998665554 479999999998653
No 263
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=44.59 E-value=1.9e+02 Score=26.51 Aligned_cols=99 Identities=14% Similarity=0.080 Sum_probs=52.7
Q ss_pred HHHhc-HHHHHhh-cceeeecCCCcccCCCC---CChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHH-HH
Q 024709 17 DSLKN-LNEIILA-SDGAMVARGDLGAQVPL---EQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVA-DV 90 (264)
Q Consensus 17 ~~~~n-~~eI~~~-~Dgi~i~rgdL~~~~~~---~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~-dv 90 (264)
++++. ++-.++. +|||++. --+.|... ++=..+.+..++.+ .-..||++.+ ...| .|.- -.
T Consensus 28 ~~l~~li~~l~~~Gv~Gi~~~--GstGE~~~Lt~eEr~~~~~~~~~~~-~~~~pvi~gv---------~~~t-~~~i~~~ 94 (303)
T PRK03620 28 AAYREHLEWLAPYGAAALFAA--GGTGEFFSLTPDEYSQVVRAAVETT-AGRVPVIAGA---------GGGT-AQAIEYA 94 (303)
T ss_pred HHHHHHHHHHHHcCCCEEEEC--cCCcCcccCCHHHHHHHHHHHHHHh-CCCCcEEEec---------CCCH-HHHHHHH
Confidence 44444 3444455 8999984 22334433 33233333333333 2247888743 1223 3443 33
Q ss_pred HHHHHhccccccccccccCCCChHHHHHHHHHHHHHHH
Q 024709 91 SELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIE 128 (264)
Q Consensus 91 ~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E 128 (264)
-.+-..|+|++|+..=--...-+-+.+...+.++..++
T Consensus 95 ~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~ 132 (303)
T PRK03620 95 QAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTD 132 (303)
T ss_pred HHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCC
Confidence 44566799999997654333334566677777766543
No 264
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=44.33 E-value=74 Score=30.28 Aligned_cols=76 Identities=18% Similarity=0.171 Sum_probs=54.7
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEhhhhhhh-hhCCCCChHHH---HHHH-HHHHhccccccccccccCCCChHHHHHH
Q 024709 45 LEQVPSIQEKIVQLCRQLNKPVIVASQLLESM-IEYPIPTRAEV---ADVS-ELVRQQADALMLSGESAMGQFPDKALAV 119 (264)
Q Consensus 45 ~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM-~~~~~ptrae~---~dv~-~~v~~g~d~~~ls~eta~G~yP~eav~~ 119 (264)
.++.....+++++.++++|..|.+.= || ..+|.-+|++. -+++ .+...|+|.+.|. +|.=...|.+.-+.
T Consensus 157 ~~e~l~~~~~~v~~Ak~~Gl~v~~~i----s~~fg~p~~~r~~~~~l~~~~~~~~~~Gad~I~l~-DT~G~a~P~~v~~l 231 (347)
T PLN02746 157 IEESLVRYREVALAAKKHSIPVRGYV----SCVVGCPIEGPVPPSKVAYVAKELYDMGCYEISLG-DTIGVGTPGTVVPM 231 (347)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEE----EeeecCCccCCCCHHHHHHHHHHHHHcCCCEEEec-CCcCCcCHHHHHHH
Confidence 46777778899999999999985211 11 23455555543 3333 3778899999998 88888889998888
Q ss_pred HHHHHH
Q 024709 120 LRSVSL 125 (264)
Q Consensus 120 m~~i~~ 125 (264)
++.+..
T Consensus 232 v~~l~~ 237 (347)
T PLN02746 232 LEAVMA 237 (347)
T ss_pred HHHHHH
Confidence 887743
No 265
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=44.33 E-value=25 Score=25.82 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=20.3
Q ss_pred HHHHHHHHHcCCCCCCCEEEEEec
Q 024709 230 NQTFSLLKARGLIKSGDLIIVVSD 253 (264)
Q Consensus 230 ~~al~~~~~~g~~~~GD~VVvvsG 253 (264)
-.++..+.++|.+++||+|++++-
T Consensus 54 ~~~L~~~~~~g~~~~Gd~vl~~~~ 77 (90)
T PF08541_consen 54 PINLADALEEGRIKPGDRVLLVGF 77 (90)
T ss_dssp HHHHHHHHHTTSSCTTEEEEEEEE
T ss_pred HHHHHHHHHcCCCCCCCEEEEEEE
Confidence 346788999999999999998765
No 266
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=44.33 E-value=1.1e+02 Score=25.11 Aligned_cols=76 Identities=14% Similarity=0.060 Sum_probs=42.4
Q ss_pred cceeeecCCCcc---cCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccc
Q 024709 29 SDGAMVARGDLG---AQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSG 105 (264)
Q Consensus 29 ~Dgi~i~rgdL~---~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~ 105 (264)
+|.|++++..=+ -....+.-....+++ +.....|++++.. .+.. ++..+...|+|++.+++
T Consensus 116 ~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~pv~a~GG----------i~~~---~i~~~~~~Ga~~i~~g~ 179 (196)
T cd00564 116 ADYVGFGPVFPTPTKPGAGPPLGLELLREI---AELVEIPVVAIGG----------ITPE---NAAEVLAAGADGVAVIS 179 (196)
T ss_pred CCEEEECCccCCCCCCCCCCCCCHHHHHHH---HHhCCCCEEEECC----------CCHH---HHHHHHHcCCCEEEEeh
Confidence 899999754221 111011112222333 2336799998652 2332 45566778999998886
Q ss_pred cccCCCChHHHHHHH
Q 024709 106 ESAMGQFPDKALAVL 120 (264)
Q Consensus 106 eta~G~yP~eav~~m 120 (264)
--..-..|.++++.+
T Consensus 180 ~i~~~~~~~~~~~~l 194 (196)
T cd00564 180 AITGADDPAAAAREL 194 (196)
T ss_pred HhhcCCCHHHHHHHH
Confidence 544445577776654
No 267
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=44.06 E-value=2.7e+02 Score=25.88 Aligned_cols=44 Identities=20% Similarity=0.231 Sum_probs=35.8
Q ss_pred HHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhh
Q 024709 88 ADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCR 132 (264)
Q Consensus 88 ~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~ 132 (264)
.+.-+++..|+|++=-+.+-..| +-.|+|+-+++|-.++.....
T Consensus 123 eEal~a~~~Gad~I~TTl~gyT~-~~~~~~~~~~~i~~~i~~~~g 166 (283)
T cd04727 123 GEALRRISEGAAMIRTKGEAGTG-NVVEAVRHMRAVNGEIRKLQS 166 (283)
T ss_pred HHHHHHHHCCCCEEEecCCCCCC-cHHHHHHHHHHHHHHHHHHhC
Confidence 45578999999999888886666 678999999999888876543
No 268
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=43.92 E-value=68 Score=29.63 Aligned_cols=118 Identities=17% Similarity=0.260 Sum_probs=69.8
Q ss_pred cceEEEeccCHHHHhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEE-hhhh--hhhhhCCC
Q 024709 6 NIAVIAKIESIDSLKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVA-SQLL--ESMIEYPI 81 (264)
Q Consensus 6 ~~~iiakIE~~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~a-tq~l--eSM~~~~~ 81 (264)
++.|.-....-..++.+..=+.. -+.||+.-. .+|+++-....+++++.|+.+|.+|=.= .++- |.-+.+..
T Consensus 73 ~vPValHLDH~~~~e~i~~ai~~GftSVM~DgS----~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~ 148 (287)
T PF01116_consen 73 SVPVALHLDHGKDFEDIKRAIDAGFTSVMIDGS----ALPFEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESEE 148 (287)
T ss_dssp TSEEEEEEEEE-SHHHHHHHHHHTSSEEEEE-T----TS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSST
T ss_pred CCCEEeecccCCCHHHHHHHHHhCcccccccCC----cCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCccccc
Confidence 35555555555555555555555 899999744 6678899999999999999999877431 1110 11111100
Q ss_pred ---CChHHHHHHHHHH-HhccccccccccccCCCChH-----HHHHHHHHHHHHH
Q 024709 82 ---PTRAEVADVSELV-RQQADALMLSGESAMGQFPD-----KALAVLRSVSLRI 127 (264)
Q Consensus 82 ---ptrae~~dv~~~v-~~g~d~~~ls~eta~G~yP~-----eav~~m~~i~~~~ 127 (264)
-...+-.++..++ .-|+|++-.|--|+-|.|+- --...+.+|.+.+
T Consensus 149 ~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~ 203 (287)
T PF01116_consen 149 ETESLYTDPEEAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAV 203 (287)
T ss_dssp T-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhc
Confidence 0001123445565 67999999999999999986 2345555554444
No 269
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=43.88 E-value=64 Score=29.07 Aligned_cols=69 Identities=22% Similarity=0.175 Sum_probs=45.9
Q ss_pred hcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHH-HHHHHHHHHhccccccc
Q 024709 28 ASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAE-VADVSELVRQQADALML 103 (264)
Q Consensus 28 ~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae-~~dv~~~v~~g~d~~~l 103 (264)
-+|.+++|=|++=-+....+-+...-.++..++..|||+++-.|=+ .|-+.. -......++..+|.+.+
T Consensus 64 ~~D~vI~gGG~l~~d~~~~~~~~~~~~~~~~a~~~~k~~~~~g~gi-------GP~~~~~~r~~~~~~l~~~~~i~v 133 (298)
T TIGR03609 64 RADVVIWGGGSLLQDVTSFRSLLYYLGLMRLARLFGKPVILWGQGI-------GPLRRRLSRWLVRRVLRGCRAISV 133 (298)
T ss_pred HCCEEEECCcccccCCcccccHHHHHHHHHHHHHcCCCEEEEeccc-------CCcCCHHHHHHHHHHHccCCEEEE
Confidence 3899999999987655434445555567888899999999877643 233221 22345556777777765
No 270
>PRK15456 universal stress protein UspG; Provisional
Probab=43.62 E-value=56 Score=25.74 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCcEEEEEcCC--------chHHHHHhhcCCCCcEEEE
Q 024709 160 GAAKIANKLKASALFVYTKT--------GQMASLLSRSRPDCPIFAF 198 (264)
Q Consensus 160 aAv~lA~~l~A~aIVv~T~s--------G~tA~~iSr~RP~~PIiAv 198 (264)
...+.|.+.+++.||+-|+. |+++..+.+.-| ||++.+
T Consensus 96 ~I~~~a~~~~~DLIVmG~~g~~~~~~llGS~a~~v~~~a~-~pVLvV 141 (142)
T PRK15456 96 EVNELAEELGADVVVIGSRNPSISTHLLGSNASSVIRHAN-LPVLVV 141 (142)
T ss_pred HHHHHHhhcCCCEEEEcCCCCCccceecCccHHHHHHcCC-CCEEEe
Confidence 34567889999988887763 445556655543 888765
No 271
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=43.61 E-value=46 Score=33.56 Aligned_cols=66 Identities=15% Similarity=0.335 Sum_probs=43.2
Q ss_pred HHHhhcCCCCcEEEEcCChhhhhhcccccccEEEEe-cC-------------CCCHHHHHHHHHHHHHHcCCCCCCCEEE
Q 024709 184 SLLSRSRPDCPIFAFAPMSSVRRRLNLQWGLVPFCL-NF-------------SDDMESNLNQTFSLLKARGLIKSGDLII 249 (264)
Q Consensus 184 ~~iSr~RP~~PIiAvT~~~~~aR~L~L~~GV~P~~~-~~-------------~~~~e~~i~~al~~~~~~g~~~~GD~VV 249 (264)
+.+.+-||...++.+|... .+.+++-|||=-|++. +. .+..|..+...++.-.... +||.+|
T Consensus 183 k~v~~~rpdLk~vvmSatl-~a~Kfq~yf~n~Pll~vpg~~PvEi~Yt~e~erDylEaairtV~qih~~ee---~GDilv 258 (699)
T KOG0925|consen 183 KEVVRNRPDLKLVVMSATL-DAEKFQRYFGNAPLLAVPGTHPVEIFYTPEPERDYLEAAIRTVLQIHMCEE---PGDILV 258 (699)
T ss_pred HHHHhhCCCceEEEeeccc-chHHHHHHhCCCCeeecCCCCceEEEecCCCChhHHHHHHHHHHHHHhccC---CCCEEE
Confidence 3455778888888887654 5667788888777653 21 1224444555555444443 999999
Q ss_pred EEec
Q 024709 250 VVSD 253 (264)
Q Consensus 250 vvsG 253 (264)
..+|
T Consensus 259 FLtg 262 (699)
T KOG0925|consen 259 FLTG 262 (699)
T ss_pred EecC
Confidence 9999
No 272
>PLN02417 dihydrodipicolinate synthase
Probab=43.57 E-value=1.9e+02 Score=26.25 Aligned_cols=99 Identities=12% Similarity=0.023 Sum_probs=53.5
Q ss_pred HHHhc-HHHHHhh-cceeeecCCCcccCCCC---CChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHH-HHH
Q 024709 17 DSLKN-LNEIILA-SDGAMVARGDLGAQVPL---EQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEV-ADV 90 (264)
Q Consensus 17 ~~~~n-~~eI~~~-~Dgi~i~rgdL~~~~~~---~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~-~dv 90 (264)
+++.+ ++-.++. +|||++. | -+.|... ++-..+-+..++.+ ....|+++.+ ..++-.|. .-.
T Consensus 22 ~~~~~~i~~l~~~Gv~Gi~~~-G-stGE~~~ls~~Er~~~~~~~~~~~-~~~~pvi~gv---------~~~~t~~~i~~a 89 (280)
T PLN02417 22 EAYDSLVNMQIENGAEGLIVG-G-TTGEGQLMSWDEHIMLIGHTVNCF-GGKIKVIGNT---------GSNSTREAIHAT 89 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEEC-c-cCcchhhCCHHHHHHHHHHHHHHh-CCCCcEEEEC---------CCccHHHHHHHH
Confidence 34433 4555555 9999984 2 1223332 33222223333322 2336877633 33333343 444
Q ss_pred HHHHHhccccccccccccCCCChHHHHHHHHHHHHHH
Q 024709 91 SELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRI 127 (264)
Q Consensus 91 ~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~ 127 (264)
..|-..|+|++|+..=.-...-+-+.++....++...
T Consensus 90 ~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~~ 126 (280)
T PLN02417 90 EQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDMG 126 (280)
T ss_pred HHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhhC
Confidence 5578899999999765433323466777777776654
No 273
>KOG2683 consensus Sirtuin 4 and related class II sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=43.54 E-value=54 Score=29.95 Aligned_cols=55 Identities=24% Similarity=0.334 Sum_probs=39.4
Q ss_pred CHHHHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHH
Q 024709 15 SIDSLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAE 86 (264)
Q Consensus 15 ~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae 86 (264)
+++-++..-+-+..+||+++ ||.++ ...--=+++..++..+||+.+ .|-.||||+
T Consensus 233 n~dkv~~~~~~v~e~dg~Lv----lGsSL----~v~Sg~r~i~~a~~~k~pi~I---------vNIGpTRaD 287 (305)
T KOG2683|consen 233 NKDKVTFCMEKVKECDGFLV----LGSSL----MVLSGFRFIRHAHEKKKPIAI---------VNIGPTRAD 287 (305)
T ss_pred ChHHHHHHHHHHhccCceEE----echhH----HHHHHHHHHHHHHhhcCcEEE---------EecCCcchh
Confidence 34556666777777999987 33332 122224688999999999997 788999995
No 274
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=43.42 E-value=42 Score=25.58 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=31.5
Q ss_pred HhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEE
Q 024709 19 LKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIV 68 (264)
Q Consensus 19 ~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~ 68 (264)
+.++++.+.-.|.|+++ +.+...++++-+.+...|+||.+
T Consensus 41 ~~~~~~~~~~~Dvill~----------pqi~~~~~~i~~~~~~~~ipv~~ 80 (95)
T TIGR00853 41 YGAAGEKLDDADVVLLA----------PQVAYMLPDLKKETDKKGIPVEV 80 (95)
T ss_pred HHHHHhhcCCCCEEEEC----------chHHHHHHHHHHHhhhcCCCEEE
Confidence 34454545556777776 78889999999999999999997
No 275
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=43.39 E-value=35 Score=29.09 Aligned_cols=45 Identities=20% Similarity=0.106 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccc
Q 024709 51 IQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSG 105 (264)
Q Consensus 51 ~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~ 105 (264)
.-+++++.|+++|++++++- ..|.. -.+++..+...|+|.+.+..
T Consensus 90 ~~~~~i~~~~~~g~~~~~~~---------~~~~t-~~~~~~~~~~~g~d~v~~~p 134 (206)
T TIGR03128 90 TIKGAVKAAKKHGKEVQVDL---------INVKD-KVKRAKELKELGADYIGVHT 134 (206)
T ss_pred HHHHHHHHHHHcCCEEEEEe---------cCCCC-hHHHHHHHHHcCCCEEEEcC
Confidence 34789999999999999731 12211 12344566667999887743
No 276
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=43.36 E-value=1.9e+02 Score=26.32 Aligned_cols=100 Identities=11% Similarity=0.003 Sum_probs=55.4
Q ss_pred HHHHhcH-HHHHhh-cceeeecCCCcccCCC---CCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHH
Q 024709 16 IDSLKNL-NEIILA-SDGAMVARGDLGAQVP---LEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADV 90 (264)
Q Consensus 16 ~~~~~n~-~eI~~~-~Dgi~i~rgdL~~~~~---~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv 90 (264)
.++++++ +-.++. +||+++. --+.|.. .++-..+.+...+.+ +-..|+++-+ . ..|+.-+.-.
T Consensus 25 ~~~l~~li~~l~~~Gv~gi~v~--GstGE~~~Lt~eEr~~v~~~~~~~~-~g~~pvi~gv-------~--~~t~~ai~~a 92 (296)
T TIGR03249 25 EAAYRENIEWLLGYGLEALFAA--GGTGEFFSLTPAEYEQVVEIAVSTA-KGKVPVYTGV-------G--GNTSDAIEIA 92 (296)
T ss_pred HHHHHHHHHHHHhcCCCEEEEC--CCCcCcccCCHHHHHHHHHHHHHHh-CCCCcEEEec-------C--ccHHHHHHHH
Confidence 3455544 555555 8999984 2222333 344333333443332 2346888754 1 1233333444
Q ss_pred HHHHHhccccccccccccCCCChHHHHHHHHHHHHHH
Q 024709 91 SELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRI 127 (264)
Q Consensus 91 ~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~ 127 (264)
-.+...|+|++|+..=--...-+-+.++..+.++..+
T Consensus 93 ~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~ 129 (296)
T TIGR03249 93 RLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCEST 129 (296)
T ss_pred HHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcc
Confidence 5678899999999765433333456677777776654
No 277
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=43.31 E-value=38 Score=31.63 Aligned_cols=48 Identities=17% Similarity=0.250 Sum_probs=34.3
Q ss_pred HHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhh
Q 024709 22 LNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLES 75 (264)
Q Consensus 22 ~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leS 75 (264)
++..++. .+||.|. -+|.-.++......++++.+.|+||+++||-..-
T Consensus 228 l~~~~~~~~~GlVl~------~~G~Gn~p~~~~~~l~~a~~~gipVV~~sq~~~G 276 (323)
T smart00870 228 LDALLDSGAKGLVLE------GTGAGNVPPDLLEALKEALERGIPVVRTSRCLNG 276 (323)
T ss_pred HHHHHhCCCCEEEEE------eeCCCCCCHHHHHHHHHHHHCCCEEEEeccCCCc
Confidence 3444444 7999986 3444444556777888899999999999997654
No 278
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=43.19 E-value=2.8e+02 Score=27.62 Aligned_cols=121 Identities=17% Similarity=0.159 Sum_probs=69.9
Q ss_pred HHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhh
Q 024709 53 EKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCR 132 (264)
Q Consensus 53 k~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~ 132 (264)
.-+...|++.|.|+.+- -|..+... -+...-..|++.+.- |..+-++.+...+++.+ +.+
T Consensus 78 ~~vA~aa~~~Gi~~~Iv---------mP~~tp~~--Kv~~~r~~GA~Vvl~------g~~~d~a~~~a~~la~~-~g~-- 137 (499)
T TIGR01124 78 QGVAFSAARLGLKALIV---------MPETTPDI--KVDAVRGFGGEVVLH------GANFDDAKAKAIELSQE-KGL-- 137 (499)
T ss_pred HHHHHHHHHcCCCEEEE---------ECCCCCHH--HHHHHHhCCCEEEEe------CcCHHHHHHHHHHHHHh-cCC--
Confidence 45677899999999872 13322221 233444679886654 23345666555444322 111
Q ss_pred cccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcC--CcEEEEEcCCchHHHHH----hhcCCCCcEEEEcCChh
Q 024709 133 EGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLK--ASALFVYTKTGQMASLL----SRSRPDCPIFAFAPMSS 203 (264)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~--A~aIVv~T~sG~tA~~i----Sr~RP~~PIiAvT~~~~ 203 (264)
++..+... + .....-..-+.++.++++ .++||+..-+|.++--+ ..++|.+.||++-+...
T Consensus 138 -------~~i~p~~~--~-~~i~G~gtig~EI~~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~ 204 (499)
T TIGR01124 138 -------TFIHPFDD--P-LVIAGQGTLALEILRQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDS 204 (499)
T ss_pred -------EeeCCCCC--h-HHHHhhHHHHHHHHHhCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 11111111 1 112223445567777775 68999999999976655 45679999999998544
No 279
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=43.15 E-value=2.9e+02 Score=25.95 Aligned_cols=115 Identities=10% Similarity=0.053 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCC----CCChHHHHHHHHHHHhccccccccc------cccCCCChHHHH
Q 024709 48 VPSIQEKIVQLCRQLNKPVIVASQLLESMIEYP----IPTRAEVADVSELVRQQADALMLSG------ESAMGQFPDKAL 117 (264)
Q Consensus 48 v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~----~ptrae~~dv~~~v~~g~d~~~ls~------eta~G~yP~eav 117 (264)
+..+.+++- +.+ .+.|+|+. +-.+. .-.-+|....+..+.+++|++-|+- .-..+.+|-...
T Consensus 124 ~~~~~~~l~-~~~-~~~pvivs------I~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~ 195 (344)
T PRK05286 124 ADALAERLK-KAY-RGIPLGIN------IGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALD 195 (344)
T ss_pred HHHHHHHHH-Hhc-CCCcEEEE------EecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHH
Confidence 333444433 333 68999983 22221 1234566677777778899998851 122377887666
Q ss_pred HHHHHHHHHHHhhhhcccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcCCcEEEEEcCC
Q 024709 118 AVLRSVSLRIEKWCREGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLKASALFVYTKT 179 (264)
Q Consensus 118 ~~m~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~A~aIVv~T~s 179 (264)
+.++.+-..+... . . ...+..+...+....=....++.+.+.++++|+++.++
T Consensus 196 eiv~aVr~~~~~~-~-----~---~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 196 ELLAALKEAQAEL-H-----G---YVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred HHHHHHHHHHhcc-c-----c---CCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCc
Confidence 6665554433210 0 0 00111111112221113345566778899999998753
No 280
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=43.13 E-value=55 Score=29.85 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=28.8
Q ss_pred HHHHHHHHhccccccccccccCCCCh------HHHHHHHHHHHHHHHh
Q 024709 88 ADVSELVRQQADALMLSGESAMGQFP------DKALAVLRSVSLRIEK 129 (264)
Q Consensus 88 ~dv~~~v~~g~d~~~ls~eta~G~yP------~eav~~m~~i~~~~E~ 129 (264)
.|..-....|+|++|+.++ |..| -|++..|..|+.+.-+
T Consensus 32 ~ea~~l~~~GvD~viveN~---~d~P~~~~~~p~tva~m~~i~~~v~~ 76 (257)
T TIGR00259 32 KDAMALEEGGVDAVMFENF---FDAPFLKEVDPETVAAMAVIAGQLKS 76 (257)
T ss_pred HHHHHHHhCCCCEEEEecC---CCCCCcCCCCHHHHHHHHHHHHHHHH
Confidence 4445566679999999765 4434 4789999999887644
No 281
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=43.07 E-value=1.5e+02 Score=25.63 Aligned_cols=87 Identities=17% Similarity=0.192 Sum_probs=50.0
Q ss_pred HHHhcHHHHHhh-cceeeecCCCcccCC-CCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHH
Q 024709 17 DSLKNLNEIILA-SDGAMVARGDLGAQV-PLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELV 94 (264)
Q Consensus 17 ~~~~n~~eI~~~-~Dgi~i~rgdL~~~~-~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v 94 (264)
+.++-.....+. +|.+.|. ||..-. +.+.-....+++.+. .+.|+.+... .-+ ..|+..++
T Consensus 30 dp~~~a~~~~~~g~d~l~v~--dl~~~~~~~~~~~~~i~~i~~~---~~~pv~~~Gg---------I~~---~e~~~~~~ 92 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVV--DLDGAKGGEPVNLELIEEIVKA---VGIPVQVGGG---------IRS---LEDIERLL 92 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEE--CCCccccCCCCCHHHHHHHHHh---cCCCEEEeCC---------cCC---HHHHHHHH
Confidence 344444444444 7889887 665443 244444444554443 4799998543 222 34556777
Q ss_pred HhccccccccccccCCCChHHHHHHHHHHHHH
Q 024709 95 RQQADALMLSGESAMGQFPDKALAVLRSVSLR 126 (264)
Q Consensus 95 ~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~ 126 (264)
..|+|.+++..+ +++--.++.++.++
T Consensus 93 ~~Gad~vvigs~------~l~dp~~~~~i~~~ 118 (234)
T cd04732 93 DLGVSRVIIGTA------AVKNPELVKELLKE 118 (234)
T ss_pred HcCCCEEEECch------HHhChHHHHHHHHH
Confidence 899999987655 33334555555444
No 282
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=42.91 E-value=39 Score=26.78 Aligned_cols=40 Identities=13% Similarity=0.274 Sum_probs=28.5
Q ss_pred hcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEh
Q 024709 20 KNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVAS 70 (264)
Q Consensus 20 ~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~at 70 (264)
++++++++.+|.++- +. .|..-...++.|.++|+|+++.|
T Consensus 59 ~~l~~~~~~~DVvID--------fT---~p~~~~~~~~~~~~~g~~~ViGT 98 (124)
T PF01113_consen 59 DDLEELLEEADVVID--------FT---NPDAVYDNLEYALKHGVPLVIGT 98 (124)
T ss_dssp S-HHHHTTH-SEEEE--------ES----HHHHHHHHHHHHHHT-EEEEE-
T ss_pred hhHHHhcccCCEEEE--------cC---ChHHhHHHHHHHHhCCCCEEEEC
Confidence 677888888885543 33 67888899999999999999987
No 283
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=42.81 E-value=52 Score=26.57 Aligned_cols=56 Identities=14% Similarity=0.269 Sum_probs=41.1
Q ss_pred CHHHHhcHHHHHhh--cceee--ecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEh
Q 024709 15 SIDSLKNLNEIILA--SDGAM--VARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVAS 70 (264)
Q Consensus 15 ~~~~~~n~~eI~~~--~Dgi~--i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~at 70 (264)
+..+++++++.++. .|.++ +|-.|+.-..+.+++..-.+++++++++.|.++++.+
T Consensus 49 ~~~~~~~l~~~~~~~~pd~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~vil~~ 108 (177)
T cd01822 49 TAGGLARLPALLAQHKPDLVILELGGNDGLRGIPPDQTRANLRQMIETAQARGAPVLLVG 108 (177)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 34567788776654 56554 5666776556667788888999999999999998854
No 284
>PLN00011 cysteine synthase
Probab=42.72 E-value=2.8e+02 Score=25.66 Aligned_cols=125 Identities=15% Similarity=0.164 Sum_probs=68.2
Q ss_pred HHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhh
Q 024709 53 EKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCR 132 (264)
Q Consensus 53 k~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~ 132 (264)
.-+...|+..|.|+.+- .|......-+...-..|++.++-..+ .+ .-+.++...++..+ +
T Consensus 82 ~alA~~a~~~G~~~~iv-----------vp~~~~~~k~~~i~~~GA~V~~~~~~--~~--~~~~~~~a~~l~~~--~--- 141 (323)
T PLN00011 82 IGLACIGAARGYKVILV-----------MPSTMSLERRIILRALGAEVHLTDQS--IG--LKGMLEKAEEILSK--T--- 141 (323)
T ss_pred HHHHHHHHHcCCeEEEE-----------eCCCCCHHHHHHHHHcCCEEEEECCC--cC--hHHHHHHHHHHHHh--C---
Confidence 34566899999999883 23222223344566789998765432 11 11223333332221 0
Q ss_pred cccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhc--CCcEEEEEcCCchHHH----HHhhcCCCCcEEEEcCChh
Q 024709 133 EGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKL--KASALFVYTKTGQMAS----LLSRSRPDCPIFAFAPMSS 203 (264)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l--~A~aIVv~T~sG~tA~----~iSr~RP~~PIiAvT~~~~ 203 (264)
. ..++..+.. . +.+..--....+.++.+++ +.++||+.+-+|.|.- .+..++|...|+++-+...
T Consensus 142 --~--~~~~~~~~~-n-~~n~~~~~~t~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~ 212 (323)
T PLN00011 142 --P--GGYIPQQFE-N-PANPEIHYRTTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVES 212 (323)
T ss_pred --C--CeEEecccc-C-CccHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCC
Confidence 0 011111211 1 1111111334556677665 4799999999998765 4445789999999998654
No 285
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=42.25 E-value=81 Score=29.40 Aligned_cols=81 Identities=17% Similarity=0.242 Sum_probs=49.6
Q ss_pred cceEEEeccCHHHHhcHHHHHhh-cceeeecCCCcccCCC-CC-ChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCC
Q 024709 6 NIAVIAKIESIDSLKNLNEIILA-SDGAMVARGDLGAQVP-LE-QVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIP 82 (264)
Q Consensus 6 ~~~iiakIE~~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~-~~-~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~p 82 (264)
.++++.++-|.+... ..++. +|+|++-=.+=|-+.+ .. .......++.+... +||+.|.-+-
T Consensus 136 gi~v~~~v~s~~~A~---~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~---iPViaAGGI~--------- 200 (330)
T PF03060_consen 136 GIKVIPQVTSVREAR---KAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVD---IPVIAAGGIA--------- 200 (330)
T ss_dssp T-EEEEEESSHHHHH---HHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-S---S-EEEESS-----------
T ss_pred CCccccccCCHHHHH---HhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhhcC---CcEEEecCcC---------
Confidence 477888887766544 34444 9999887556666666 22 35666666655544 9999988654
Q ss_pred ChHHHHHHHHHHHhcccccccc
Q 024709 83 TRAEVADVSELVRQQADALMLS 104 (264)
Q Consensus 83 trae~~dv~~~v~~g~d~~~ls 104 (264)
.-.+++.++..|+|+|.+.
T Consensus 201 ---dg~~iaaal~lGA~gV~~G 219 (330)
T PF03060_consen 201 ---DGRGIAAALALGADGVQMG 219 (330)
T ss_dssp ---SHHHHHHHHHCT-SEEEES
T ss_pred ---CHHHHHHHHHcCCCEeecC
Confidence 3457789999999999885
No 286
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=42.24 E-value=79 Score=28.18 Aligned_cols=41 Identities=12% Similarity=0.260 Sum_probs=31.4
Q ss_pred hcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEh
Q 024709 20 KNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVAS 70 (264)
Q Consensus 20 ~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~at 70 (264)
+|++++++-.|.|+-+-. -+.....+-+.|+++|+|++.+.
T Consensus 106 ~~~~~~~~~~DlVvd~~D----------~~~~r~~ln~~~~~~~ip~v~~~ 146 (240)
T TIGR02355 106 AELAALIAEHDIVVDCTD----------NVEVRNQLNRQCFAAKVPLVSGA 146 (240)
T ss_pred HHHHHHhhcCCEEEEcCC----------CHHHHHHHHHHHHHcCCCEEEEE
Confidence 577888888887777622 24566778899999999999864
No 287
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=42.00 E-value=92 Score=28.83 Aligned_cols=108 Identities=17% Similarity=0.270 Sum_probs=68.0
Q ss_pred ceEEEeccCHHHHhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhh----hhh-----
Q 024709 7 IAVIAKIESIDSLKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLL----ESM----- 76 (264)
Q Consensus 7 ~~iiakIE~~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~l----eSM----- 76 (264)
+.|.-....-.-++.+.+=++. -+.||+.-. ++|+++-....|++++.|+..|.+|=.==.-+ +..
T Consensus 78 VPV~lHLDHg~~~e~i~~ai~~GftSVMiDgS----~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~ 153 (288)
T TIGR00167 78 VPVALHLDHGASEEDCAQAVKAGFSSVMIDGS----HEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADE 153 (288)
T ss_pred CcEEEECCCCCCHHHHHHHHHcCCCEEEecCC----CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccc
Confidence 4455555554444444333333 788999844 56889999999999999999999873210000 000
Q ss_pred -hhCCCCChHHHHHHHHHHHh-ccccccccccccCCCChH----HHHHHHHHH
Q 024709 77 -IEYPIPTRAEVADVSELVRQ-QADALMLSGESAMGQFPD----KALAVLRSV 123 (264)
Q Consensus 77 -~~~~~ptrae~~dv~~~v~~-g~d~~~ls~eta~G~yP~----eav~~m~~i 123 (264)
.....| .+...++.. |+|++-.|--|+-|.|+- --...+.+|
T Consensus 154 ~~~~T~p-----eea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I 201 (288)
T TIGR00167 154 SALYTDP-----EEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEI 201 (288)
T ss_pred cccCCCH-----HHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHH
Confidence 001122 345677765 999999999999999953 333445444
No 288
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=41.96 E-value=71 Score=29.77 Aligned_cols=50 Identities=16% Similarity=0.259 Sum_probs=31.7
Q ss_pred CCcEEEEEcCCchHHHHHh-----hcCCCCcEEEEcCChhhhhhcccccccEEEEec
Q 024709 169 KASALFVYTKTGQMASLLS-----RSRPDCPIFAFAPMSSVRRRLNLQWGLVPFCLN 220 (264)
Q Consensus 169 ~A~aIVv~T~sG~tA~~iS-----r~RP~~PIiAvT~~~~~aR~L~L~~GV~P~~~~ 220 (264)
+-+.+|++|.||.|...++ +-| .++||++|.+..+++ +.-..|...+.++
T Consensus 78 ~~dlvI~iS~SG~T~e~~~a~~~a~~~-ga~vIaIT~~~~L~~-~a~~~~~~~i~ip 132 (337)
T PRK08674 78 EKTLVIAVSYSGNTEETLSAVEQALKR-GAKIIAITSGGKLKE-MAKEHGLPVIIVP 132 (337)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHC-CCeEEEECCCchHHH-HHHhcCCeEEEeC
Confidence 3468899999998766543 333 579999997765443 4333455455443
No 289
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=41.56 E-value=1.8e+02 Score=26.87 Aligned_cols=42 Identities=26% Similarity=0.351 Sum_probs=31.9
Q ss_pred HHHHHHhc-----CCcEEEEEcCCchHHHHHh----hcCCCCcEEEEcCCh
Q 024709 161 AAKIANKL-----KASALFVYTKTGQMASLLS----RSRPDCPIFAFAPMS 202 (264)
Q Consensus 161 Av~lA~~l-----~A~aIVv~T~sG~tA~~iS----r~RP~~PIiAvT~~~ 202 (264)
+.++.+++ +.+.||+..-+|.|+.-++ .++|+++|+++-+..
T Consensus 170 ~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~ 220 (331)
T PRK03910 170 ALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSR 220 (331)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 44555555 3689999999999875544 567999999998854
No 290
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=41.54 E-value=70 Score=28.12 Aligned_cols=38 Identities=21% Similarity=0.447 Sum_probs=27.9
Q ss_pred HHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEE
Q 024709 23 NEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIV 68 (264)
Q Consensus 23 ~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~ 68 (264)
.+.+.-.|.+.|+.| |+ .. ...+.+++.++++++|+++
T Consensus 72 ~~~~~~~d~v~ig~g-l~----~~---~~~~~i~~~~~~~~~pvVl 109 (254)
T cd01171 72 LELLERADAVVIGPG-LG----RD---EEAAEILEKALAKDKPLVL 109 (254)
T ss_pred HhhhccCCEEEEecC-CC----CC---HHHHHHHHHHHhcCCCEEE
Confidence 333445899999876 43 22 5677888888999999987
No 291
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=41.48 E-value=3e+02 Score=25.73 Aligned_cols=207 Identities=17% Similarity=0.208 Sum_probs=105.7
Q ss_pred ceEEEeccCHHHHhcHHH-----HHhh--cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhC
Q 024709 7 IAVIAKIESIDSLKNLNE-----IILA--SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEY 79 (264)
Q Consensus 7 ~~iiakIE~~~~~~n~~e-----I~~~--~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~ 79 (264)
..|.+|+|....--.+.+ |+.. ..|. +-+|+--+|-.--..-.. +.-.|+..|-++++-
T Consensus 26 ~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~-l~pG~tIVE~TSGNTGI~---LA~vaa~~Gy~~iiv---------- 91 (300)
T COG0031 26 VEIYAKLESFNPGGSVKDRIALYMIEDAEKRGL-LKPGGTIVEATSGNTGIA---LAMVAAAKGYRLIIV---------- 91 (300)
T ss_pred ceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCC-CCCCCEEEEcCCChHHHH---HHHHHHHcCCcEEEE----------
Confidence 568888886543333322 2221 3443 234544344332222222 345688899999873
Q ss_pred CCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCCCCCCCchHHHHH
Q 024709 80 PIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCREGKQHATFEPPPISSSVSAGIPGEICN 159 (264)
Q Consensus 80 ~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~aIA~ 159 (264)
.|......-...--..|+..++... .+.+-..+++-..++..+...+ .++..|. .+ +.+..----.
T Consensus 92 -mP~~~S~er~~~l~a~GAevi~t~~---~~g~~~~a~~~a~el~~~~p~~--------~~~~~Qf-~N-paN~~aH~~t 157 (300)
T COG0031 92 -MPETMSQERRKLLRALGAEVILTPG---APGNMKGAIERAKELAAEIPGY--------AVWLNQF-EN-PANPEAHYET 157 (300)
T ss_pred -eCCCCCHHHHHHHHHcCCEEEEcCC---CCCchHHHHHHHHHHHHhCCCc--------eEchhhc-CC-CccHHHHHhh
Confidence 3332223333455569999998876 2333334444444333222111 1222232 22 2222111223
Q ss_pred HHHHHHHhcC--CcEEEEEcCCchH----HHHHhhcCCCCcEEEEcCChhhhhh-------c-ccccccEEEEecC--C-
Q 024709 160 GAAKIANKLK--ASALFVYTKTGQM----ASLLSRSRPDCPIFAFAPMSSVRRR-------L-NLQWGLVPFCLNF--S- 222 (264)
Q Consensus 160 aAv~lA~~l~--A~aIVv~T~sG~t----A~~iSr~RP~~PIiAvT~~~~~aR~-------L-~L~~GV~P~~~~~--~- 222 (264)
.+-++-+.++ .+++|+-.-||-| ++.+-..+|++.|+++=|..+..-. + .+-.|..|..... .
T Consensus 158 T~~EI~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~g~~~i~GIG~~~ip~~~~~~~iD 237 (300)
T COG0031 158 TGPEIWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGEGPHKIEGIGAGFVPENLDLDLID 237 (300)
T ss_pred hHHHHHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCCCCcccCCCCCCcCCcccccccCc
Confidence 3455666555 7899999988886 4555567799999999988654331 1 2444555532221 0
Q ss_pred ----CCHHHHHHHHHHHHHHcCC
Q 024709 223 ----DDMESNLNQTFSLLKARGL 241 (264)
Q Consensus 223 ----~~~e~~i~~al~~~~~~g~ 241 (264)
-+.++.+..+-.++.++|+
T Consensus 238 ~v~~V~d~~A~~~~r~La~~eGi 260 (300)
T COG0031 238 EVIRVSDEEAIATARRLAREEGL 260 (300)
T ss_pred eEEEECHHHHHHHHHHHHHHhCe
Confidence 1234445555555555555
No 292
>PF14010 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3ODM_C.
Probab=41.33 E-value=14 Score=36.77 Aligned_cols=63 Identities=27% Similarity=0.327 Sum_probs=45.7
Q ss_pred CcceEEEeccCHHHHhcHHHHHhh--cc--------eeeecCCCcccCCCCCChHHHHHHHH----HHHHHhCCCEE
Q 024709 5 VNIAVIAKIESIDSLKNLNEIILA--SD--------GAMVARGDLGAQVPLEQVPSIQEKIV----QLCRQLNKPVI 67 (264)
Q Consensus 5 ~~~~iiakIE~~~~~~n~~eI~~~--~D--------gi~i~rgdL~~~~~~~~v~~~qk~ii----~~~~~~gkpv~ 67 (264)
+.+.||.=||+.+++-|+++|+.. -+ =||+||.|=++..|+-.-...-|.-+ +--.+.|.|+.
T Consensus 168 ~~I~vIPL~Ed~~~~l~~~~Il~~y~~~~g~~~~y~RVFLarSDpAmnyG~iaa~L~~k~AL~~l~~~~~e~gi~Iy 244 (491)
T PF14010_consen 168 EEIEVIPLFEDVDSLLNADEILEEYLKDKGRDPEYQRVFLARSDPAMNYGHIAAVLANKYALSKLYELEEELGIPIY 244 (491)
T ss_dssp TSSEEEEEE-SHHHHHTHHHHHHHHHHHTT---SEEEEEEESHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT-EEE
T ss_pred CcceEeeccccHHHHhcHHHHHHHHHHHhcCCchheeeeeccCchhhccchHHHHHHHHHHHHHHHHHHHhcCCcee
Confidence 578999999999999999999987 22 38999999999999743334444444 44477888864
No 293
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=41.26 E-value=98 Score=29.88 Aligned_cols=82 Identities=21% Similarity=0.276 Sum_probs=44.7
Q ss_pred cceEEEe-ccCHHHHhcHHHHHhh-cceeeecCCCcccCC--CCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCC
Q 024709 6 NIAVIAK-IESIDSLKNLNEIILA-SDGAMVARGDLGAQV--PLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPI 81 (264)
Q Consensus 6 ~~~iiak-IE~~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~--~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ 81 (264)
+..+|.| |-+. +.....++. +|||.|.-.- |-.+ +.+ -...-.++.+.+. ...|+++...+-
T Consensus 253 ~~pvivKgV~~~---~dA~~a~~~G~d~I~vsnhG-Gr~~d~~~~-t~~~L~ei~~~~~-~~~~vi~dGGIr-------- 318 (383)
T cd03332 253 DLPIVLKGILHP---DDARRAVEAGVDGVVVSNHG-GRQVDGSIA-ALDALPEIVEAVG-DRLTVLFDSGVR-------- 318 (383)
T ss_pred CCCEEEecCCCH---HHHHHHHHCCCCEEEEcCCC-CcCCCCCcC-HHHHHHHHHHHhc-CCCeEEEeCCcC--------
Confidence 4567777 4332 223333334 8999986211 1111 111 1222223333332 248999865432
Q ss_pred CChHHHHHHHHHHHhccccccccc
Q 024709 82 PTRAEVADVSELVRQQADALMLSG 105 (264)
Q Consensus 82 ptrae~~dv~~~v~~g~d~~~ls~ 105 (264)
.-.||+.|+..|+|++++..
T Consensus 319 ----~G~Dv~KALaLGA~~v~iGr 338 (383)
T cd03332 319 ----TGADIMKALALGAKAVLIGR 338 (383)
T ss_pred ----cHHHHHHHHHcCCCEEEEcH
Confidence 34799999999999999863
No 294
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=40.92 E-value=59 Score=30.50 Aligned_cols=54 Identities=20% Similarity=0.391 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHH-hCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHH-HhccccccccccccCCC
Q 024709 48 VPSIQEKIVQLCRQ-LNKPVIVASQLLESMIEYPIPTRAEVADVSELV-RQQADALMLSGESAMGQ 111 (264)
Q Consensus 48 v~~~qk~ii~~~~~-~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v-~~g~d~~~ls~eta~G~ 111 (264)
-++.-.++++++++ ..+||++ ...|+..++.|++.++ ..|+|++.+++=|-.|.
T Consensus 145 ~~e~l~~l~~~vk~~~~~Pv~v----------Kl~P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~ 200 (310)
T COG0167 145 DPELLEKLLEAVKAATKVPVFV----------KLAPNITDIDEIAKAAEEAGADGLIAINTTKSGM 200 (310)
T ss_pred CHHHHHHHHHHHHhcccCceEE----------EeCCCHHHHHHHHHHHHHcCCcEEEEEeeccccc
Confidence 34455678878876 4479987 3577999999998855 55699999997665555
No 295
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=40.76 E-value=48 Score=31.23 Aligned_cols=47 Identities=6% Similarity=0.097 Sum_probs=32.9
Q ss_pred HHHHHhh-cceeeecCCCcccCCCCCChH--HHHHHHHHHHHHhCCCEEEEhhhhh
Q 024709 22 LNEIILA-SDGAMVARGDLGAQVPLEQVP--SIQEKIVQLCRQLNKPVIVASQLLE 74 (264)
Q Consensus 22 ~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~--~~qk~ii~~~~~~gkpv~~atq~le 74 (264)
++..++. .+||++. -+|.-.+| ......++++.+.|+||+++||...
T Consensus 226 l~~~~~~~~~GiVl~------~~G~Gn~p~~~~~~~~l~~~~~~Gi~VV~~Sr~~~ 275 (335)
T PRK09461 226 VRNFLRQPVKALILR------SYGVGNAPQNPALLQELKEASERGIVVVNLTQCMS 275 (335)
T ss_pred HHHHHhCCCCEEEEc------cCCCCCCCCCHHHHHHHHHHHHCCCEEEEeCCCCC
Confidence 4555555 7999996 34443444 4455667888899999999999764
No 296
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=40.73 E-value=37 Score=25.99 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=26.9
Q ss_pred HHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccc
Q 024709 53 EKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQAD 99 (264)
Q Consensus 53 k~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d 99 (264)
.+.+++.++.|||+.+.| +|+..++++..+-.. ..|.+
T Consensus 20 ~e~l~~L~~~g~~~~~lT-------Nns~~s~~~~~~~L~--~~Gi~ 57 (101)
T PF13344_consen 20 VEALDALRERGKPVVFLT-------NNSSRSREEYAKKLK--KLGIP 57 (101)
T ss_dssp HHHHHHHHHTTSEEEEEE-------S-SSS-HHHHHHHHH--HTTTT
T ss_pred HHHHHHHHHcCCCEEEEe-------CCCCCCHHHHHHHHH--hcCcC
Confidence 677888999999999977 788888887654443 35554
No 297
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=40.69 E-value=1e+02 Score=27.43 Aligned_cols=69 Identities=16% Similarity=0.194 Sum_probs=43.5
Q ss_pred HHhcHHHHHhhcceeee---cCCCcccCCCCCChHHHHHHHHHHHHHh--CCCEEEEhhhhhhhhhCCCCChHHHHHHHH
Q 024709 18 SLKNLNEIILASDGAMV---ARGDLGAQVPLEQVPSIQEKIVQLCRQL--NKPVIVASQLLESMIEYPIPTRAEVADVSE 92 (264)
Q Consensus 18 ~~~n~~eI~~~~Dgi~i---~rgdL~~~~~~~~v~~~qk~ii~~~~~~--gkpv~~atq~leSM~~~~~ptrae~~dv~~ 92 (264)
..+.++.+++.+|++++ .+|..+ ++..-...-+++.++. .+|+.+- -..-+. .|+..
T Consensus 141 ~~e~l~~~~~~~~~~l~msv~~~~g~------~~~~~~~~~i~~lr~~~~~~~i~v~---------gGI~~~---e~i~~ 202 (244)
T PRK13125 141 PDLLIHRLSKLSPLFIYYGLRPATGV------PLPVSVERNIKRVRNLVGNKYLVVG---------FGLDSP---EDARD 202 (244)
T ss_pred CHHHHHHHHHhCCCEEEEEeCCCCCC------CchHHHHHHHHHHHHhcCCCCEEEe---------CCcCCH---HHHHH
Confidence 46788999999999973 344422 3444455555666655 3676652 223233 35567
Q ss_pred HHHhcccccccc
Q 024709 93 LVRQQADALMLS 104 (264)
Q Consensus 93 ~v~~g~d~~~ls 104 (264)
....|+|++...
T Consensus 203 ~~~~gaD~vvvG 214 (244)
T PRK13125 203 ALSAGADGVVVG 214 (244)
T ss_pred HHHcCCCEEEEC
Confidence 778999998876
No 298
>PRK06835 DNA replication protein DnaC; Validated
Probab=40.64 E-value=61 Score=30.47 Aligned_cols=43 Identities=21% Similarity=0.207 Sum_probs=34.4
Q ss_pred hcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhh
Q 024709 28 ASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQL 72 (264)
Q Consensus 28 ~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~ 72 (264)
-+|-++| -|||.+.+-+.....--.++......+||+|++|+.
T Consensus 246 ~~DLLII--DDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 246 NCDLLII--DDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred cCCEEEE--eccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3899999 599998776655555567888888899999998864
No 299
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=40.60 E-value=28 Score=29.02 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=24.9
Q ss_pred CcEEEEEcCCchHHHHHh-----hcCCCCcEEEEcCCh
Q 024709 170 ASALFVYTKTGQMASLLS-----RSRPDCPIFAFAPMS 202 (264)
Q Consensus 170 A~aIVv~T~sG~tA~~iS-----r~RP~~PIiAvT~~~ 202 (264)
-+.+|++|.+|.|...+. |- -.+||+++|.+.
T Consensus 73 ~Dv~I~iS~sG~t~~~i~~~~~ak~-~g~~ii~IT~~~ 109 (179)
T TIGR03127 73 GDLLIAISGSGETESLVTVAKKAKE-IGATVAAITTNP 109 (179)
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHH-CCCeEEEEECCC
Confidence 468999999999876553 43 359999999854
No 300
>PRK06110 hypothetical protein; Provisional
Probab=40.59 E-value=2.7e+02 Score=25.63 Aligned_cols=118 Identities=9% Similarity=0.046 Sum_probs=67.9
Q ss_pred HHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhhc
Q 024709 54 KIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCRE 133 (264)
Q Consensus 54 ~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~~ 133 (264)
-+...|++.|.|+.+-. |..+..+ -....-..|++.+.. |....++++...+..++ +.+
T Consensus 84 alA~~a~~~G~~~~ivv---------p~~~~~~--k~~~i~~~GA~V~~~------~~~~~~~~~~a~~~~~~-~~~--- 142 (322)
T PRK06110 84 SVAFAARRHGLAATIVV---------PHGNSVE--KNAAMRALGAELIEH------GEDFQAAREEAARLAAE-RGL--- 142 (322)
T ss_pred HHHHHHHHcCCCEEEEE---------cCCCCHH--HHHHHHHcCCEEEEE------CCCHHHHHHHHHHHHHh-cCC---
Confidence 45568999999998831 3222222 224456689997653 22344555544433221 111
Q ss_pred ccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcC-CcEEEEEcCCchHHHHHh----hcCCCCcEEEEcCCh
Q 024709 134 GKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLK-ASALFVYTKTGQMASLLS----RSRPDCPIFAFAPMS 202 (264)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~-A~aIVv~T~sG~tA~~iS----r~RP~~PIiAvT~~~ 202 (264)
++.++. . + ...+.-..-+.++.++++ .+.||+..-+|.+.--++ .++|...|+++-+..
T Consensus 143 ------~~~~~~-~--~-~~~~G~~t~~~Ei~~q~~~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~ 206 (322)
T PRK06110 143 ------HMVPSF-H--P-DLVRGVATYALELFRAVPDLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAH 206 (322)
T ss_pred ------EEcCCC-C--C-hHHhccchHHHHHHhhCCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCC
Confidence 111221 1 1 111223334556666664 589999999999876664 468999999999854
No 301
>PLN02826 dihydroorotate dehydrogenase
Probab=40.32 E-value=1.4e+02 Score=29.01 Aligned_cols=109 Identities=17% Similarity=0.218 Sum_probs=61.9
Q ss_pred cceEEEeccCHHHHhcHHHHHhh-----cceeeec-----C-CCcc-----cCC----CCCChHHHHHHHHHHHHHh--C
Q 024709 6 NIAVIAKIESIDSLKNLNEIILA-----SDGAMVA-----R-GDLG-----AQV----PLEQVPSIQEKIVQLCRQL--N 63 (264)
Q Consensus 6 ~~~iiakIE~~~~~~n~~eI~~~-----~Dgi~i~-----r-gdL~-----~~~----~~~~v~~~qk~ii~~~~~~--g 63 (264)
.+.|+.||=--..-+++++|++. +|||.+. | +|+- .+. |.+--+...+.+-+..+.. .
T Consensus 262 ~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG~pl~~~sl~~v~~l~~~~~~~ 341 (409)
T PLN02826 262 PPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSGKPLFDLSTEVLREMYRLTRGK 341 (409)
T ss_pred CCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCCccccHHHHHHHHHHHHHhCCC
Confidence 57899999322222345555543 8999775 3 2231 111 1133344444444444444 3
Q ss_pred CCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccC-CCChHHHHHHHHHHHHHHHhhhh
Q 024709 64 KPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAM-GQFPDKALAVLRSVSLRIEKWCR 132 (264)
Q Consensus 64 kpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~-G~yP~eav~~m~~i~~~~E~~~~ 132 (264)
.|+|-.+-+. ...|+...++.||++|.+-.--.. | | ..+.+|.++-++++.
T Consensus 342 ipIIgvGGI~------------sg~Da~e~i~AGAs~VQv~Ta~~~~G--p----~~i~~I~~eL~~~l~ 393 (409)
T PLN02826 342 IPLVGCGGVS------------SGEDAYKKIRAGASLVQLYTAFAYEG--P----ALIPRIKAELAACLE 393 (409)
T ss_pred CcEEEECCCC------------CHHHHHHHHHhCCCeeeecHHHHhcC--H----HHHHHHHHHHHHHHH
Confidence 6777755443 346889999999999998632222 2 3 356666666666554
No 302
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=40.28 E-value=75 Score=27.91 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=51.4
Q ss_pred cCHHHHhcHHHHHhhcceeeecCCCcccCCCCCChH-------------HHHHHHHHHHHHhCCCEEEEhhhhhhhhhCC
Q 024709 14 ESIDSLKNLNEIILASDGAMVARGDLGAQVPLEQVP-------------SIQEKIVQLCRQLNKPVIVASQLLESMIEYP 80 (264)
Q Consensus 14 E~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~-------------~~qk~ii~~~~~~gkpv~~atq~leSM~~~~ 80 (264)
-|+.+++.|+++.+.-+.++||=|=. +..+.+. ..-+.+++.|+++|.|++- -.-
T Consensus 42 ~t~~a~~~i~~l~~~~~~~~vGAGTV---l~~~~a~~a~~aGA~FivsP~~~~~v~~~~~~~~i~~iP---------G~~ 109 (204)
T TIGR01182 42 RTPVALDAIRLLRKEVPDALIGAGTV---LNPEQLRQAVDAGAQFIVSPGLTPELAKHAQDHGIPIIP---------GVA 109 (204)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEeC---CCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCcEEC---------CCC
Confidence 47788888888887766688876632 1112221 1246899999999999984 112
Q ss_pred CCChHHHHHHHHHHHhccccccccc
Q 024709 81 IPTRAEVADVSELVRQQADALMLSG 105 (264)
Q Consensus 81 ~ptrae~~dv~~~v~~g~d~~~ls~ 105 (264)
.| +++..|...|+|.+=+=.
T Consensus 110 Tp-----tEi~~A~~~Ga~~vKlFP 129 (204)
T TIGR01182 110 TP-----SEIMLALELGITALKLFP 129 (204)
T ss_pred CH-----HHHHHHHHCCCCEEEECC
Confidence 33 445899999999987743
No 303
>COG1831 Predicted metal-dependent hydrolase (urease superfamily) [General function prediction only]
Probab=40.26 E-value=39 Score=31.23 Aligned_cols=116 Identities=21% Similarity=0.189 Sum_probs=68.4
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHH
Q 024709 47 QVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLR 126 (264)
Q Consensus 47 ~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~ 126 (264)
++...--++.++.|+.+.-=..++ .-+-.||++-..++ |.-|.++.++|..-+.-
T Consensus 58 r~yd~~lr~ve~~r~e~~~~~~~v---------vGvHPaE~~~l~e~----------------~~~peea~e~m~~~lel 112 (285)
T COG1831 58 RLYDIHLRLVEKIREEGPVEAYAV---------VGVHPAEVSRLAEA----------------GRSPEEALEEMRHALEL 112 (285)
T ss_pred HHHHHHHHHHHHHHHhcCceeEEE---------eccCHHHHHHHHHh----------------ccChHHHHHHHHHHHHH
Confidence 445555566666666655422222 25666766544432 22277899999999998
Q ss_pred HHhhhhcccccc--cCCCCCCCCC-CCCCchHHHHHHHHHHHHhcCCcEEEEEcCCchH--HHHHhh
Q 024709 127 IEKWCREGKQHA--TFEPPPISSS-VSAGIPGEICNGAAKIANKLKASALFVYTKTGQM--ASLLSR 188 (264)
Q Consensus 127 ~E~~~~~~~~~~--~~~~~~~~~~-~~~~~~~aIA~aAv~lA~~l~A~aIVv~T~sG~t--A~~iSr 188 (264)
|.+++.+.+.-. ...++....+ .-......+-..|.++|.+.++. |...|.+... ...+++
T Consensus 113 A~k~v~eg~avaiGEvGrPHypVs~~v~~~~n~vl~~a~elA~dvdc~-vqLHtes~~~~~~~~i~~ 178 (285)
T COG1831 113 AAKLVEEGKAVAIGEVGRPHYPVSEEVWEASNEVLEYAMELAKDVDCA-VQLHTESLDEETYEEIAE 178 (285)
T ss_pred HHHHHhccceeeeeccCCCCCCCCHHHHHHHHHHHHHHHHHhhcCCCc-EEEecCCCChHHHHHHHH
Confidence 988876543110 1111211110 01124667788899999999995 8889988876 444544
No 304
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=40.23 E-value=71 Score=29.00 Aligned_cols=87 Identities=21% Similarity=0.297 Sum_probs=58.6
Q ss_pred HHHhcHHHHHhh--cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCC-CCChHHHHHHHHH
Q 024709 17 DSLKNLNEIILA--SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYP-IPTRAEVADVSEL 93 (264)
Q Consensus 17 ~~~~n~~eI~~~--~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~-~ptrae~~dv~~~ 93 (264)
....++|++++. .|.|+|+ .|. ..-..++.+|-++||+|++ +.| .+|-+|...+..+
T Consensus 54 ~~~~~~~~ll~~~~iD~V~Ia-------tp~----~~H~e~~~~AL~aGkhVl~---------EKPla~t~~ea~~l~~~ 113 (342)
T COG0673 54 KAYTDLEELLADPDIDAVYIA-------TPN----ALHAELALAALEAGKHVLC---------EKPLALTLEEAEELVEL 113 (342)
T ss_pred cccCCHHHHhcCCCCCEEEEc-------CCC----hhhHHHHHHHHhcCCEEEE---------cCCCCCCHHHHHHHHHH
Confidence 356789999998 7999996 332 2235566899999999998 555 7788888877777
Q ss_pred HHhccccccccccccCCCChHHHHHHHHHHHHHH
Q 024709 94 VRQQADALMLSGESAMGQFPDKALAVLRSVSLRI 127 (264)
Q Consensus 94 v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~ 127 (264)
.... .+.|. ..-.-.|- .+++.+++++.+-
T Consensus 114 a~~~--~~~l~-v~~~~Rf~-p~~~~~k~li~~g 143 (342)
T COG0673 114 ARKA--GVKLM-VGFNRRFD-PAVQALKELIDSG 143 (342)
T ss_pred HHHc--CCcee-eehhhhcC-HHHHHHHHHHhcC
Confidence 6665 33333 11222332 3777777777653
No 305
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=40.21 E-value=3.1e+02 Score=26.39 Aligned_cols=89 Identities=10% Similarity=0.129 Sum_probs=56.5
Q ss_pred CCCchHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHhhc--CCCCcEEEEcCChhhhh--hcccccccEEEEecCCCCH
Q 024709 150 SAGIPGEICNGAAKIANKLKASALFVYTKTGQMASLLSRS--RPDCPIFAFAPMSSVRR--RLNLQWGLVPFCLNFSDDM 225 (264)
Q Consensus 150 ~~~~~~aIA~aAv~lA~~l~A~aIVv~T~sG~tA~~iSr~--RP~~PIiAvT~~~~~aR--~L~L~~GV~P~~~~~~~~~ 225 (264)
..+..+.-+...+..+.+.+.+. |+...+|++++.+|.| +-..|.+.+.|.....+ ......|+.-+.++ .+.
T Consensus 97 TGSFKdRga~~~i~~a~~~g~~~-Vv~aSsGN~g~alA~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~--g~~ 173 (398)
T TIGR03844 97 TCSFKELEALPTMQRLKERGGKT-LVVASAGNTGRAFAEVSAITGQPVILVVPKSSADRLWTTEPASSVLLVTVD--GDY 173 (398)
T ss_pred ccccHHHHHHHHHHHHHHcCCCE-EEEECCCHHHHHHHHHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECC--CCH
Confidence 44566777777777788778764 5666889999888754 45577777777652221 11256677665554 344
Q ss_pred HHHHHHHHHHHHHcCC
Q 024709 226 ESNLNQTFSLLKARGL 241 (264)
Q Consensus 226 e~~i~~al~~~~~~g~ 241 (264)
++..+.+.+.+.++|+
T Consensus 174 d~a~~~a~~~a~~~g~ 189 (398)
T TIGR03844 174 TDAIALADRIATLPGF 189 (398)
T ss_pred HHHHHHHHHHHHhCCc
Confidence 5555556666665554
No 306
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=40.18 E-value=1.1e+02 Score=26.30 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=31.1
Q ss_pred hcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEh
Q 024709 20 KNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVAS 70 (264)
Q Consensus 20 ~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~at 70 (264)
++.++..+-.|.|+.+..+ +....++-+.|+++|+|.+.+.
T Consensus 102 ~~~~~~~~~~dvVi~~~~~----------~~~~~~ln~~c~~~~ip~i~~~ 142 (197)
T cd01492 102 EKPEEFFSQFDVVVATELS----------RAELVKINELCRKLGVKFYATG 142 (197)
T ss_pred ccHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEEE
Confidence 4556777778888877433 4567788899999999998754
No 307
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=40.04 E-value=42 Score=31.34 Aligned_cols=74 Identities=8% Similarity=0.104 Sum_probs=43.2
Q ss_pred HHHHHHHHhCCCEEE--------Ehhhhhhhhh-CCCCCh---HHHHHHHHHHHhccccccccccccCCC--ChHHHHHH
Q 024709 54 KIVQLCRQLNKPVIV--------ASQLLESMIE-YPIPTR---AEVADVSELVRQQADALMLSGESAMGQ--FPDKALAV 119 (264)
Q Consensus 54 ~ii~~~~~~gkpv~~--------atq~leSM~~-~~~ptr---ae~~dv~~~v~~g~d~~~ls~eta~G~--yP~eav~~ 119 (264)
..|.+|+++|.||.- ..+.++.|.. +..-.. ..+-++ |...|+|+.++.-||..+. ..-.-+..
T Consensus 46 ~widaAHrnGV~vLGTiife~~~~~~~~~~ll~~~~~g~~~~A~kLi~i--a~~yGFDGw~iN~E~~~~~~~~~~~l~~F 123 (311)
T PF03644_consen 46 GWIDAAHRNGVKVLGTIIFEWGGGAEWCEELLEKDEDGSFPYADKLIEI--AKYYGFDGWLINIETPLSGPEDAENLIDF 123 (311)
T ss_dssp HHHHHHHHTT--EEEEEEEEEE--HHHHHHHT---TTS--HHHHHHHHH--HHHHT--EEEEEEEESSTTGGGHHHHHHH
T ss_pred hhHHHHHhcCceEEEEEEecCCchHHHHHHHHcCCcccccHHHHHHHHH--HHHcCCCceEEEecccCCchhHHHHHHHH
Confidence 367999999999962 2345566655 222222 222333 5569999999999999986 55556666
Q ss_pred HHHHHHHHHh
Q 024709 120 LRSVSLRIEK 129 (264)
Q Consensus 120 m~~i~~~~E~ 129 (264)
++.+-+++.+
T Consensus 124 ~~~l~~~~~~ 133 (311)
T PF03644_consen 124 LKYLRKEAHE 133 (311)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 6666666655
No 308
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=39.75 E-value=28 Score=26.82 Aligned_cols=32 Identities=9% Similarity=0.267 Sum_probs=24.1
Q ss_pred CcEEEEEcCCchHHHHHhhc----CCCCcEEEEcCC
Q 024709 170 ASALFVYTKTGQMASLLSRS----RPDCPIFAFAPM 201 (264)
Q Consensus 170 A~aIVv~T~sG~tA~~iSr~----RP~~PIiAvT~~ 201 (264)
-+.+|+++.+|.+...+... +-++|++++|.+
T Consensus 54 ~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~ 89 (131)
T PF01380_consen 54 DDLVIIISYSGETRELIELLRFAKERGAPVILITSN 89 (131)
T ss_dssp TEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESS
T ss_pred cceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCC
Confidence 36899999999987755422 246999999964
No 309
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=39.67 E-value=3e+02 Score=25.13 Aligned_cols=174 Identities=14% Similarity=0.132 Sum_probs=87.8
Q ss_pred HHhcHHHHHhh-cceeeec-CCCccc--CCCCCChHHHHHHHHHHHH-HhCCCEEEEhhhhhhhhhCCCCChHHHHHHHH
Q 024709 18 SLKNLNEIILA-SDGAMVA-RGDLGA--QVPLEQVPSIQEKIVQLCR-QLNKPVIVASQLLESMIEYPIPTRAEVADVSE 92 (264)
Q Consensus 18 ~~~n~~eI~~~-~Dgi~i~-rgdL~~--~~~~~~v~~~qk~ii~~~~-~~gkpv~~atq~leSM~~~~~ptrae~~dv~~ 92 (264)
|+++.+..-+- .|||||- -||.-. +.+ ++...+...++...+ ..+.|+++ |+|. ..|- +.- +-
T Consensus 30 A~~ea~~l~~~GvD~viveN~~d~P~~~~~~-p~tva~m~~i~~~v~~~~~~p~Gv--nvL~-----nd~~--aal--~i 97 (257)
T TIGR00259 30 AWKDAMALEEGGVDAVMFENFFDAPFLKEVD-PETVAAMAVIAGQLKSDVSIPLGI--NVLR-----NDAV--AAL--AI 97 (257)
T ss_pred HHHHHHHHHhCCCCEEEEecCCCCCCcCCCC-HHHHHHHHHHHHHHHHhcCCCeee--eeec-----CCCH--HHH--HH
Confidence 44455544444 8999994 234333 333 445556667766664 57789987 4441 1221 122 34
Q ss_pred HHHhccccccccccccCCCCh----------HHHHHHHHHHHHHHHhhhhcccccccCCCCCCCCCCCCCchHHHHHHHH
Q 024709 93 LVRQQADALMLSGESAMGQFP----------DKALAVLRSVSLRIEKWCREGKQHATFEPPPISSSVSAGIPGEICNGAA 162 (264)
Q Consensus 93 ~v~~g~d~~~ls~eta~G~yP----------~eav~~m~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv 162 (264)
|...|+|++=.. .-.|.|+ -|.++.-++|-..+ +-+.....+.-. +.. ...+...+-
T Consensus 98 A~a~ga~FIRv~--~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v-------~i~adV~~kh~~-~l~---~~~~~e~a~ 164 (257)
T TIGR00259 98 AMAVGAKFIRVN--VLTGVYASDQGIIEGNAGELIRYKKLLGSEV-------KILADIVVKHAV-HLG---NRDLESIAL 164 (257)
T ss_pred HHHhCCCEEEEc--cEeeeEecccccccccHHHHHHHHHHcCCCc-------EEEeceeecccC-cCC---CCCHHHHHH
Confidence 445788876541 2333332 22333322221000 001111111000 111 123455555
Q ss_pred HHHHhcCCcEEEE-EcCCchH--HHHHhhc---CCCCcEEEEc--CChhhhhhcccccccEE
Q 024709 163 KIANKLKASALFV-YTKTGQM--ASLLSRS---RPDCPIFAFA--PMSSVRRRLNLQWGLVP 216 (264)
Q Consensus 163 ~lA~~l~A~aIVv-~T~sG~t--A~~iSr~---RP~~PIiAvT--~~~~~aR~L~L~~GV~P 216 (264)
.+.+...++++++ =+.||.+ -..+.++ .|..|++.-+ +-+.+.+.+...+|+.-
T Consensus 165 ~~~~~~~aDavivtG~~TG~~~d~~~l~~vr~~~~~~PvllggGvt~eNv~e~l~~adGviV 226 (257)
T TIGR00259 165 DTVERGLADAVILSGKTTGTEVDLELLKLAKETVKDTPVLAGSGVNLENVEELLSIADGVIV 226 (257)
T ss_pred HHHHhcCCCEEEECcCCCCCCCCHHHHHHHHhccCCCeEEEECCCCHHHHHHHHhhCCEEEE
Confidence 6666766876544 4467754 5567777 4678988766 34556666777778765
No 310
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=39.65 E-value=1.1e+02 Score=29.24 Aligned_cols=81 Identities=26% Similarity=0.379 Sum_probs=44.8
Q ss_pred cceEEEe-ccCHHHHhcHHHHHhh-cceeeec-CCCcccCCCCCChHHHHHHHHHHHHHh--CCCEEEEhhhhhhhhhCC
Q 024709 6 NIAVIAK-IESIDSLKNLNEIILA-SDGAMVA-RGDLGAQVPLEQVPSIQEKIVQLCRQL--NKPVIVASQLLESMIEYP 80 (264)
Q Consensus 6 ~~~iiak-IE~~~~~~n~~eI~~~-~Dgi~i~-rgdL~~~~~~~~v~~~qk~ii~~~~~~--gkpv~~atq~leSM~~~~ 80 (264)
...|+.| |-++ +......+. +|+|.+. -| |-.+. ..+.....+.+.++.. ..|++....+-
T Consensus 221 ~~PvivKgv~~~---~dA~~a~~~G~d~I~vsnhG--Gr~ld--~~~~~~~~l~~i~~a~~~~i~vi~dGGIr------- 286 (351)
T cd04737 221 GLPVIVKGIQSP---EDADVAINAGADGIWVSNHG--GRQLD--GGPASFDSLPEIAEAVNHRVPIIFDSGVR------- 286 (351)
T ss_pred CCcEEEecCCCH---HHHHHHHHcCCCEEEEeCCC--CccCC--CCchHHHHHHHHHHHhCCCCeEEEECCCC-------
Confidence 4678888 3222 333333344 9999984 22 22211 1111122222223333 37888754322
Q ss_pred CCChHHHHHHHHHHHhccccccccc
Q 024709 81 IPTRAEVADVSELVRQQADALMLSG 105 (264)
Q Consensus 81 ~ptrae~~dv~~~v~~g~d~~~ls~ 105 (264)
.-.|+..++..|+|+|++..
T Consensus 287 -----~g~Di~kaLalGA~~V~iGr 306 (351)
T cd04737 287 -----RGEHVFKALASGADAVAVGR 306 (351)
T ss_pred -----CHHHHHHHHHcCCCEEEECH
Confidence 34699999999999999864
No 311
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=39.54 E-value=3.1e+02 Score=25.30 Aligned_cols=119 Identities=13% Similarity=0.174 Sum_probs=70.2
Q ss_pred HHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhh
Q 024709 53 EKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCR 132 (264)
Q Consensus 53 k~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~ 132 (264)
.-+...|++.|.|+.+- .|..+.-..+...-..|++.+...+ .| -++.+...+++++ +.+
T Consensus 80 ~alA~~a~~~G~~~~v~-----------~p~~~~~~k~~~~~~~GA~V~~~~~-----~~-~~~~~~a~~~~~~-~g~-- 139 (317)
T TIGR02991 80 RALAYAAAEEGVRATIC-----------MSELVPQNKVDEIRRLGAEVRIVGR-----SQ-DDAQEEVERLVAD-RGL-- 139 (317)
T ss_pred HHHHHHHHHhCCCEEEE-----------cCCCCCHHHHHHHHHcCCEEEEeCC-----CH-HHHHHHHHHHHHh-cCC--
Confidence 45677899999999883 2222222334455678999876653 22 3455554444322 111
Q ss_pred cccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcC-CcEEEEEcCCchHHHHHh----hcCCCCcEEEEcCC
Q 024709 133 EGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLK-ASALFVYTKTGQMASLLS----RSRPDCPIFAFAPM 201 (264)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~-A~aIVv~T~sG~tA~~iS----r~RP~~PIiAvT~~ 201 (264)
++..+... + ...+.-..-+.++.++++ .+.||+..-+|.+..-++ .++|...|+++-+.
T Consensus 140 -------~~~~~~~n--~-~~~~g~~t~a~Ei~~q~~~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~ 203 (317)
T TIGR02991 140 -------TMLPPFDH--P-DIVAGQGTLGLEVVEQMPDLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSME 203 (317)
T ss_pred -------EeeCCCCC--h-HHHhhHHHHHHHHHHhCCCCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEEC
Confidence 11111111 1 122334446667777774 478999999999766555 45799999999885
No 312
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=39.39 E-value=47 Score=27.98 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=38.2
Q ss_pred cEEEEEcCCchHHH-----HHhhcCC-CCcEEEEcCChhhhhhcccccccEEEEec
Q 024709 171 SALFVYTKTGQMAS-----LLSRSRP-DCPIFAFAPMSSVRRRLNLQWGLVPFCLN 220 (264)
Q Consensus 171 ~aIVv~T~sG~tA~-----~iSr~RP-~~PIiAvT~~~~~aR~L~L~~GV~P~~~~ 220 (264)
..=|+||..|.||- ++...+. +-.|+++|.|....+. ..-+|...+...
T Consensus 67 gi~Vvft~~~~tAD~~Ie~~v~~~~~~~~~v~VVTSD~~iq~~-~~~~GA~~iss~ 121 (166)
T PF05991_consen 67 GIEVVFTKEGETADDYIERLVRELKNRPRQVTVVTSDREIQRA-ARGRGAKRISSE 121 (166)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhccCCCeEEEEeCCHHHHHH-HhhCCCEEEcHH
Confidence 45699999999985 4556665 6899999999876665 578999998654
No 313
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=39.36 E-value=44 Score=31.78 Aligned_cols=47 Identities=19% Similarity=0.330 Sum_probs=33.4
Q ss_pred HHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhh
Q 024709 22 LNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLE 74 (264)
Q Consensus 22 ~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~le 74 (264)
++.+++. ++||.|. -+|.-.+|......++.+.+.|+||+++||-..
T Consensus 255 l~~~~~~g~~GlVl~------g~G~Gn~p~~~~~al~~a~~~GipVV~~Sr~~~ 302 (349)
T TIGR00520 255 VNAVLDAGAKGIVLA------GVGNGSLSAAGLKVNETAAKLGVPIVRSSRVPD 302 (349)
T ss_pred HHHHHhCCCCEEEEE------eECCCCCCHHHHHHHHHHHHCCCEEEEEccCCC
Confidence 4445555 7899886 344444444566778889999999999998654
No 314
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=39.31 E-value=25 Score=32.16 Aligned_cols=61 Identities=18% Similarity=0.222 Sum_probs=43.1
Q ss_pred HhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHH
Q 024709 19 LKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSEL 93 (264)
Q Consensus 19 ~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~ 93 (264)
-+|+++++.. .|-|+.+-++ +.....+.+.|+++++|++.+.-.- ....||+-++.|+...
T Consensus 111 ~e~~~~ll~~~~D~VIdaiD~----------~~~k~~L~~~c~~~~ip~I~~gGag----~k~dp~~~~~~di~~t 172 (268)
T PRK15116 111 PDNVAEYMSAGFSYVIDAIDS----------VRPKAALIAYCRRNKIPLVTTGGAG----GQIDPTQIQVVDLAKT 172 (268)
T ss_pred hhhHHHHhcCCCCEEEEcCCC----------HHHHHHHHHHHHHcCCCEEEECCcc----cCCCCCeEEEEeeecc
Confidence 3567777643 6766665332 2345578999999999999864322 4569999999998774
No 315
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=39.15 E-value=2.8e+02 Score=24.65 Aligned_cols=187 Identities=16% Similarity=0.136 Sum_probs=90.9
Q ss_pred cceeeecCCCcccC-CCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccc
Q 024709 29 SDGAMVARGDLGAQ-VPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGES 107 (264)
Q Consensus 29 ~Dgi~i~rgdL~~~-~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~et 107 (264)
+|.+.+. ||... .+...-....+++.+ +.+.|+.+.. ..-+.. |+..+...|+|.++++.++
T Consensus 44 ~~~l~v~--Dl~~~~~~~~~n~~~i~~i~~---~~~~pv~~~G---------Gi~s~~---d~~~~~~~Ga~~vivgt~~ 106 (254)
T TIGR00735 44 ADELVFL--DITASSEGRTTMIDVVERTAE---TVFIPLTVGG---------GIKSIE---DVDKLLRAGADKVSINTAA 106 (254)
T ss_pred CCEEEEE--cCCcccccChhhHHHHHHHHH---hcCCCEEEEC---------CCCCHH---HHHHHHHcCCCEEEEChhH
Confidence 6888884 55433 133333333344444 4578999854 344444 5566777899999998664
Q ss_pred cCCCChHHHHHHHHHHHHHH--Hhhhhcccccc-cCCC--C-C--CCCCCCCCchHHHHHHHHHHHHhcCCcEEEE--Ec
Q 024709 108 AMGQFPDKALAVLRSVSLRI--EKWCREGKQHA-TFEP--P-P--ISSSVSAGIPGEICNGAAKIANKLKASALFV--YT 177 (264)
Q Consensus 108 a~G~yP~eav~~m~~i~~~~--E~~~~~~~~~~-~~~~--~-~--~~~~~~~~~~~aIA~aAv~lA~~l~A~aIVv--~T 177 (264)
-. .| ..+.++..+- |+....-..+. .... . . ..........+ ....++...+.+++.|++ .+
T Consensus 107 ~~--~p----~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~--~~~~~~~l~~~G~~~iivt~i~ 178 (254)
T TIGR00735 107 VK--NP----ELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLD--AVEWAKEVEKLGAGEILLTSMD 178 (254)
T ss_pred hh--Ch----HHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCC--HHHHHHHHHHcCCCEEEEeCcC
Confidence 32 34 3344443332 22110000000 0000 0 0 00000000011 123345556778998888 55
Q ss_pred CCc-------hHHHHHhhcCCCCcEEEEc--CChhhhhhcccccccEEEEecCC-CCHHHHHHHHHHHHHHcCC
Q 024709 178 KTG-------QMASLLSRSRPDCPIFAFA--PMSSVRRRLNLQWGLVPFCLNFS-DDMESNLNQTFSLLKARGL 241 (264)
Q Consensus 178 ~sG-------~tA~~iSr~RP~~PIiAvT--~~~~~aR~L~L~~GV~P~~~~~~-~~~e~~i~~al~~~~~~g~ 241 (264)
+.| ..+..+.+. .+.|+++.- .+..-+..+.-.-|+..+.+... .+.+-.+..+++++++.|+
T Consensus 179 ~~g~~~g~~~~~~~~i~~~-~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~~~gi 251 (254)
T TIGR00735 179 KDGTKSGYDLELTKAVSEA-VKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLAERGI 251 (254)
T ss_pred cccCCCCCCHHHHHHHHHh-CCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHHHCCC
Confidence 544 234455443 579999876 44444444422222666544321 1112235566788888875
No 316
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=39.06 E-value=31 Score=28.87 Aligned_cols=33 Identities=9% Similarity=0.267 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCchHHHHHh-----hcCCCCcEEEEcCCh
Q 024709 169 KASALFVYTKTGQMASLLS-----RSRPDCPIFAFAPMS 202 (264)
Q Consensus 169 ~A~aIVv~T~sG~tA~~iS-----r~RP~~PIiAvT~~~ 202 (264)
+-+.+|++|.+|+|...+. |. -.+||+++|.+.
T Consensus 75 ~~D~vI~iS~sG~t~~~i~~~~~ak~-~g~~iI~IT~~~ 112 (179)
T cd05005 75 PGDLLIAISGSGETSSVVNAAEKAKK-AGAKVVLITSNP 112 (179)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHH-CCCeEEEEECCC
Confidence 3468999999999877553 33 379999999854
No 317
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=39.04 E-value=39 Score=32.16 Aligned_cols=81 Identities=14% Similarity=0.089 Sum_probs=53.8
Q ss_pred cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEE-hhh--hhhhhhCC----CCChHHHHHHHHHHHh-----
Q 024709 29 SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVA-SQL--LESMIEYP----IPTRAEVADVSELVRQ----- 96 (264)
Q Consensus 29 ~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~a-tq~--leSM~~~~----~ptrae~~dv~~~v~~----- 96 (264)
-+.||+... ++|+++-...-|++++.|+..|..|=.= .++ -|--+... .-...+..|...++..
T Consensus 124 ftSVMiDgS----~lp~eENI~~TkevVe~Ah~~gvsVEaElG~igg~ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~t 199 (345)
T cd00946 124 FSSHMLDLS----EEPLEENIEICKKYLERMAKINMWLEMEIGITGGEEDGVDNSGVDNAELYTQPEDVWYVYEALSKIS 199 (345)
T ss_pred CceEEeeCC----CCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCcccCcccccccccccCCCHHHHHHHHHHhccCC
Confidence 478999744 6688999999999999999999987210 000 00000000 0001122455677775
Q ss_pred ccccccccccccCCCCh
Q 024709 97 QADALMLSGESAMGQFP 113 (264)
Q Consensus 97 g~d~~~ls~eta~G~yP 113 (264)
|+|++-.|--|+-|.|+
T Consensus 200 gvD~LAvaiGt~HG~Y~ 216 (345)
T cd00946 200 PNFSIAAAFGNVHGVYK 216 (345)
T ss_pred CceeeeeeccccccCCC
Confidence 99999999999999997
No 318
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=38.95 E-value=1.5e+02 Score=24.29 Aligned_cols=89 Identities=20% Similarity=0.141 Sum_probs=52.0
Q ss_pred cceEEEeccC-------HHHHhcHHHHHhh-cceeeecCCCcccCCC--CCChHHHHHHHHHHHHHhCCCEEEEhhhhhh
Q 024709 6 NIAVIAKIES-------IDSLKNLNEIILA-SDGAMVARGDLGAQVP--LEQVPSIQEKIVQLCRQLNKPVIVASQLLES 75 (264)
Q Consensus 6 ~~~iiakIE~-------~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~--~~~v~~~qk~ii~~~~~~gkpv~~atq~leS 75 (264)
++.+++++=. .+.++..++-.+. +|++++.+.- ....+ .+.+...-+.+.+.| +.+.|+++-.
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~-~~~~~~~~~~~~~~~~~i~~~~-~~~~pv~iy~----- 120 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVINI-GSLKEGDWEEVLEEIAAVVEAA-DGGLPLKVIL----- 120 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccH-HHHhCCCHHHHHHHHHHHHHHh-cCCceEEEEE-----
Confidence 5777887754 4577777777777 9999985321 11111 245555556666666 5699999732
Q ss_pred hhhCCCC--ChHHHHHHHH-HHHhcccccccc
Q 024709 76 MIEYPIP--TRAEVADVSE-LVRQQADALMLS 104 (264)
Q Consensus 76 M~~~~~p--trae~~dv~~-~v~~g~d~~~ls 104 (264)
.|.- +..++...++ +...|+|++=.+
T Consensus 121 ---~p~~~~~~~~~~~~~~~~~~~g~~~iK~~ 149 (201)
T cd00945 121 ---ETRGLKTADEIAKAARIAAEAGADFIKTS 149 (201)
T ss_pred ---ECCCCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence 2222 2223333332 235789988654
No 319
>PRK11096 ansB L-asparaginase II; Provisional
Probab=38.79 E-value=46 Score=31.59 Aligned_cols=49 Identities=14% Similarity=0.084 Sum_probs=34.2
Q ss_pred HHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhh
Q 024709 22 LNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESM 76 (264)
Q Consensus 22 ~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM 76 (264)
++.+++. .+||++. -+|.-.++......++++.+.|+||+++||-..-.
T Consensus 249 l~~~l~~~~~GiVl~------g~G~Gn~~~~~~~~l~~a~~~GipVV~~Sqc~~G~ 298 (347)
T PRK11096 249 AKALVDAGYDGIVSA------GVGNGNLYKTVFDTLATAAKNGVAVVRSSRVPTGA 298 (347)
T ss_pred HHHHHhccCCEEEEE------eECCCCCCHHHHHHHHHHHHCCCEEEEeCCCCCCC
Confidence 4555554 7999986 23333344456677788999999999999987543
No 320
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=38.65 E-value=97 Score=29.75 Aligned_cols=20 Identities=20% Similarity=0.132 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcccccccccc
Q 024709 87 VADVSELVRQQADALMLSGE 106 (264)
Q Consensus 87 ~~dv~~~v~~g~d~~~ls~e 106 (264)
-.|+..++..|+|+||++.-
T Consensus 295 g~Dv~KaLalGAd~V~igR~ 314 (367)
T TIGR02708 295 GQHVFKALASGADLVALGRP 314 (367)
T ss_pred HHHHHHHHHcCCCEEEEcHH
Confidence 46999999999999999754
No 321
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=38.63 E-value=1.1e+02 Score=26.28 Aligned_cols=57 Identities=16% Similarity=0.175 Sum_probs=38.4
Q ss_pred CCcceEEEeccCHH-HHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEh
Q 024709 4 LVNIAVIAKIESID-SLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVAS 70 (264)
Q Consensus 4 ~~~~~iiakIE~~~-~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~at 70 (264)
|.++.|-+.-|... -.+|.+++++-.|.|+.+..+ +..-..+-+.|+++++|++.+.
T Consensus 88 Np~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~----------~~~~~~ln~~c~~~~ip~i~~~ 145 (198)
T cd01485 88 NPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEEN----------YERTAKVNDVCRKHHIPFISCA 145 (198)
T ss_pred CCCCEEEEEecccccchhhHHHHHhCCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEEE
Confidence 44455555444432 145677888888988876321 4556678899999999999864
No 322
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=38.54 E-value=33 Score=29.06 Aligned_cols=55 Identities=15% Similarity=0.191 Sum_probs=40.9
Q ss_pred HHHHhcHH-HHHhhc--c--eeeecCCCcccCC--------CCCChHHHHHHHHHHHHHhCCCEEEEh
Q 024709 16 IDSLKNLN-EIILAS--D--GAMVARGDLGAQV--------PLEQVPSIQEKIVQLCRQLNKPVIVAS 70 (264)
Q Consensus 16 ~~~~~n~~-eI~~~~--D--gi~i~rgdL~~~~--------~~~~v~~~qk~ii~~~~~~gkpv~~at 70 (264)
...+++++ ++++.. | -|++|=.|+.... +.+++..-.++|+++|++.|.++++.|
T Consensus 59 ~~~l~r~~~~v~~~~~p~~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~~~~vil~t 126 (204)
T cd01830 59 PSALARFDRDVLSQPGVRTVIILEGVNDIGASGTDFAAAPVTAEELIAGYRQLIRRAHARGIKVIGAT 126 (204)
T ss_pred hHHHHHHHHHHhcCCCCCEEEEecccccccccccccccCCCCHHHHHHHHHHHHHHHHHCCCeEEEec
Confidence 46788886 455543 3 4566788987554 557777888999999999999999865
No 323
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after Escherichia coli deoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerization domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].
Probab=38.45 E-value=73 Score=26.46 Aligned_cols=61 Identities=15% Similarity=0.163 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHhhcCCCC-cEEEEcCChhhhhhcccccccEEEEe
Q 024709 155 GEICNGAAKIANKLKASALFVYTKTGQMASLLSRSRPDC-PIFAFAPMSSVRRRLNLQWGLVPFCL 219 (264)
Q Consensus 155 ~aIA~aAv~lA~~l~A~aIVv~T~sG~tA~~iSr~RP~~-PIiAvT~~~~~aR~L~L~~GV~P~~~ 219 (264)
++||..|+++-.+ . =.+|=.+|.|...++++=|.- ++-++|++..++..|.-..++.-++.
T Consensus 7 ~~IA~~A~~~I~~---~-~~Ifld~GtT~~~la~~L~~~~~ltVvTnsl~ia~~l~~~~~~~vi~~ 68 (161)
T PF00455_consen 7 RAIARKAASLIED---G-DTIFLDSGTTTLELAKYLPDKKNLTVVTNSLPIANELSENPNIEVILL 68 (161)
T ss_pred HHHHHHHHHhCCC---C-CEEEEECchHHHHHHHHhhcCCceEEEECCHHHHHHHHhcCceEEEEe
Confidence 4566666544433 1 245556777777777776655 78888888887777766555555544
No 324
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=38.44 E-value=33 Score=26.40 Aligned_cols=34 Identities=9% Similarity=0.267 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCchHHHHH-----hhcCCCCcEEEEcCChh
Q 024709 169 KASALFVYTKTGQMASLL-----SRSRPDCPIFAFAPMSS 203 (264)
Q Consensus 169 ~A~aIVv~T~sG~tA~~i-----Sr~RP~~PIiAvT~~~~ 203 (264)
.-+.+|++|.+|.+...+ ++.+ .++++++|.+..
T Consensus 60 ~~~~~i~iS~~g~~~~~~~~~~~a~~~-g~~iv~iT~~~~ 98 (139)
T cd05013 60 PGDVVIAISFSGETKETVEAAEIAKER-GAKVIAITDSAN 98 (139)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHc-CCeEEEEcCCCC
Confidence 347899999999976543 3444 699999999875
No 325
>PRK08329 threonine synthase; Validated
Probab=38.41 E-value=1.4e+02 Score=27.95 Aligned_cols=51 Identities=8% Similarity=0.054 Sum_probs=35.9
Q ss_pred CCCchHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHhhc--CCCCcEEEEcCC
Q 024709 150 SAGIPGEICNGAAKIANKLKASALFVYTKTGQMASLLSRS--RPDCPIFAFAPM 201 (264)
Q Consensus 150 ~~~~~~aIA~aAv~lA~~l~A~aIVv~T~sG~tA~~iSr~--RP~~PIiAvT~~ 201 (264)
..+..+.-+...+..|.+.+.+.|++.| +|++++.+|.| +-..|.+.+.|.
T Consensus 84 tGSfKdRga~~~i~~a~~~g~~~vv~aS-sGN~g~alA~~aa~~G~~~~v~vp~ 136 (347)
T PRK08329 84 TGSFKDRGTYVTVAKLKEEGINEVVIDS-SGNAALSLALYSLSEGIKVHVFVSY 136 (347)
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEEC-CCcHHHHHHHHHHHcCCcEEEEECC
Confidence 3456677777777778888888777766 99998877754 244666666664
No 326
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=38.36 E-value=86 Score=28.65 Aligned_cols=64 Identities=9% Similarity=0.117 Sum_probs=46.2
Q ss_pred HHHHhh--cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhcccc
Q 024709 23 NEIILA--SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADA 100 (264)
Q Consensus 23 ~eI~~~--~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~ 100 (264)
-|++.. -|.++|. .|=+.-....++ .++..|+..|.+.++ .-|.+ +-..+.+++..|+++
T Consensus 32 ~E~~a~~GfD~v~iD-----~EHg~~~~~~l~-~~i~a~~~~g~~~lV---------Rvp~~---~~~~i~r~LD~GA~G 93 (267)
T PRK10128 32 AEIAATSGYDWLLID-----GEHAPNTIQDLY-HQLQAIAPYASQPVI---------RPVEG---SKPLIKQVLDIGAQT 93 (267)
T ss_pred HHHHHHcCCCEEEEc-----cccCCCCHHHHH-HHHHHHHhcCCCeEE---------ECCCC---CHHHHHHHhCCCCCe
Confidence 345555 7999995 355555666554 578888899999887 33333 346778999999999
Q ss_pred cccc
Q 024709 101 LMLS 104 (264)
Q Consensus 101 ~~ls 104 (264)
||+-
T Consensus 94 IivP 97 (267)
T PRK10128 94 LLIP 97 (267)
T ss_pred eEec
Confidence 9996
No 327
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=38.24 E-value=2.9e+02 Score=25.44 Aligned_cols=123 Identities=14% Similarity=0.121 Sum_probs=66.4
Q ss_pred HHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhh
Q 024709 53 EKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCR 132 (264)
Q Consensus 53 k~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~ 132 (264)
.-+...|+..|.|+.+- .|..+.-.-+...-..|++.+...+ .+.-++.+...++.++-..+
T Consensus 64 ~alA~~a~~~G~~~~iv-----------~p~~~~~~k~~~l~~~GA~v~~~~~-----~~~~~~~~~~~~l~~~~~~~-- 125 (316)
T cd06448 64 LAAAYAARKLGVPCTIV-----------VPESTKPRVVEKLRDEGATVVVHGK-----VWWEADNYLREELAENDPGP-- 125 (316)
T ss_pred HHHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEECC-----chHHHHHHHHHHHHhccCCc--
Confidence 35678899999999983 2222222234455578999776542 21223333333222110011
Q ss_pred cccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcC----CcEEEEEcCCchHHHHHh----hcC-CCCcEEEEcCChh
Q 024709 133 EGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLK----ASALFVYTKTGQMASLLS----RSR-PDCPIFAFAPMSS 203 (264)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~----A~aIVv~T~sG~tA~~iS----r~R-P~~PIiAvT~~~~ 203 (264)
++..+... +.. .+.-..-+.++.++++ .+.||+..-+|.+..-++ .++ |+.+|+++-|...
T Consensus 126 -------~~~~~~~n--~~~-~~g~~t~~~Ei~~q~~~~~~~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g~ 195 (316)
T cd06448 126 -------VYVHPFDD--PLI-WEGHSSMVDEIAQQLQSQEKVDAIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGA 195 (316)
T ss_pred -------EEeCCCCC--chh-hccccHHHHHHHHHccccCCCCEEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCCC
Confidence 11111111 111 1111223566777664 589999999998765554 455 9999999988553
No 328
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=38.08 E-value=1.6e+02 Score=23.67 Aligned_cols=85 Identities=19% Similarity=0.216 Sum_probs=47.8
Q ss_pred cceEEEeccCHHHHhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCCh
Q 024709 6 NIAVIAKIESIDSLKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTR 84 (264)
Q Consensus 6 ~~~iiakIE~~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptr 84 (264)
+..++.++......+... ..+. +|.+.+.++.-+....... +.....+....+..++|++.+..+ -+
T Consensus 114 ~~~v~~~~~~~~~~~~~~-~~~~g~d~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~pi~~~GGi---------~~- 181 (200)
T cd04722 114 DVKVVVKLSPTGELAAAA-AEEAGVDEVGLGNGGGGGGGRDAV-PIADLLLILAKRGSKVPVIAGGGI---------ND- 181 (200)
T ss_pred CceEEEEECCCCccchhh-HHHcCCCEEEEcCCcCCCCCccCc-hhHHHHHHHHHhcCCCCEEEECCC---------CC-
Confidence 466777776544332211 2233 7999998876643332221 111122333345678999986633 11
Q ss_pred HHHHHHHHHHHhcccccccc
Q 024709 85 AEVADVSELVRQQADALMLS 104 (264)
Q Consensus 85 ae~~dv~~~v~~g~d~~~ls 104 (264)
-.++..++..|+|+++++
T Consensus 182 --~~~~~~~~~~Gad~v~vg 199 (200)
T cd04722 182 --PEDAAEALALGADGVIVG 199 (200)
T ss_pred --HHHHHHHHHhCCCEEEec
Confidence 134567777899999875
No 329
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=38.06 E-value=62 Score=31.20 Aligned_cols=58 Identities=21% Similarity=0.326 Sum_probs=44.6
Q ss_pred EEEeccCHHHHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEE
Q 024709 9 VIAKIESIDSLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVA 69 (264)
Q Consensus 9 iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~a 69 (264)
+.+-+|-..-+-++|+-++-+|-|+-|=|=+=...-.-++|. .|.+.|+++||||++-
T Consensus 264 l~~G~d~v~~~~~l~~~l~~ADlVITGEG~~D~Qtl~GK~p~---~Va~~A~~~~vPviai 321 (375)
T TIGR00045 264 LKPGIDLVLELLDLEQKIKDADLVITGEGRLDRQSLMGKAPV---GVAKRAKKYGVPVIAI 321 (375)
T ss_pred EccHHHHHHHhhCHHHHhcCCCEEEECCCcccccccCCchHH---HHHHHHHHhCCeEEEE
Confidence 344455555667899999999999999887766666667665 5677899999999983
No 330
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=37.91 E-value=58 Score=31.19 Aligned_cols=76 Identities=14% Similarity=0.148 Sum_probs=51.8
Q ss_pred cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEE-hhh--h-hh-----h---hhCCCCChHHHHHHHHHHHh
Q 024709 29 SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVA-SQL--L-ES-----M---IEYPIPTRAEVADVSELVRQ 96 (264)
Q Consensus 29 ~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~a-tq~--l-eS-----M---~~~~~ptrae~~dv~~~v~~ 96 (264)
-+.||+.. -++|+++-....|++++.|+..|..|=-= .++ - +. + .....| .+...++..
T Consensus 136 ftSVMiDg----S~lpfeENI~~TrevVe~Ah~~GvsVEaELG~vgG~Ed~~~~~~~~~~~~yTdP-----eeA~~Fv~~ 206 (357)
T TIGR01520 136 FSSHMIDL----SEEPIEENIEICVKYLKRMAKIKMWLEIEIGITGGEEDGVDNSHMDAEALYTQP-----EDVYYAYEE 206 (357)
T ss_pred CceEEeeC----CCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccccCCCH-----HHHHHHHHH
Confidence 57899984 46788999999999999999999987210 000 0 10 0 001122 233556653
Q ss_pred -----ccccccccccccCCCCh
Q 024709 97 -----QADALMLSGESAMGQFP 113 (264)
Q Consensus 97 -----g~d~~~ls~eta~G~yP 113 (264)
|+|++..|--|+-|.|+
T Consensus 207 t~~~TgvD~LAvAiGT~HG~Yk 228 (357)
T TIGR01520 207 LSKISPNFSIAAAFGNVHGVYK 228 (357)
T ss_pred hccCCCcceeeeeeccccCCcC
Confidence 89999999999999993
No 331
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=37.89 E-value=86 Score=25.23 Aligned_cols=49 Identities=27% Similarity=0.302 Sum_probs=24.3
Q ss_pred ChhhhhhcccccccEE--EEe-cCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEec
Q 024709 201 MSSVRRRLNLQWGLVP--FCL-NFSDDMESNLNQTFSLLKARGLIKSGDLIIVVSD 253 (264)
Q Consensus 201 ~~~~aR~L~L~~GV~P--~~~-~~~~~~e~~i~~al~~~~~~g~~~~GD~VVvvsG 253 (264)
+.+..++..+..||-+ ++. +...+..+++..+..+++++|+ ..|++++.
T Consensus 55 ea~~~~~~l~~~gvp~~~I~~e~~s~~T~ena~~~~~~~~~~~~----~~iilVT~ 106 (155)
T PF02698_consen 55 EAEAMRDYLIELGVPEERIILEPKSTNTYENARFSKRLLKERGW----QSIILVTS 106 (155)
T ss_dssp HHHHHHHHHHHT---GGGEEEE----SHHHHHHHHHHHHHT-SS----S-EEEE--
T ss_pred HHHHHHHHHHhcccchheeEccCCCCCHHHHHHHHHHHHHhhcC----CeEEEECC
Confidence 3345555555567553 222 3446777778888899998887 45666655
No 332
>PRK09532 DNA polymerase III subunit alpha; Reviewed
Probab=37.79 E-value=70 Score=34.28 Aligned_cols=42 Identities=17% Similarity=0.228 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhcc
Q 024709 52 QEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQA 98 (264)
Q Consensus 52 qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~ 98 (264)
.+++++.|++.|+|++.+.. ++...|..++..|+..++..|.
T Consensus 187 n~~Li~lAkk~giplVATnD-----vhY~~~eD~~~hdvL~~i~~g~ 228 (874)
T PRK09532 187 NVEIVKIARELGIKIIATND-----SHFISCYDVEAHDALLCIQTGK 228 (874)
T ss_pred HHHHHHHHHHhCCCEEEccC-----CcccCHhHHHHHHHHHHHhCCC
Confidence 36789999999999997542 2344688888899999998875
No 333
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=37.45 E-value=2.6e+02 Score=27.85 Aligned_cols=182 Identities=14% Similarity=0.252 Sum_probs=99.7
Q ss_pred eccCHHHHhcHHHHHhhccee-eecC--CCcc--cCCCC---CChHHHHHHHHHHHH------HhCCCEEEEhhhhhhhh
Q 024709 12 KIESIDSLKNLNEIILASDGA-MVAR--GDLG--AQVPL---EQVPSIQEKIVQLCR------QLNKPVIVASQLLESMI 77 (264)
Q Consensus 12 kIE~~~~~~n~~eI~~~~Dgi-~i~r--gdL~--~~~~~---~~v~~~qk~ii~~~~------~~gkpv~~atq~leSM~ 77 (264)
|-|++--.+|++.+-+ +|+ +|+| |.|. -+.|. ++...+...+.+... -.||-|+|.
T Consensus 193 M~~npat~~Nl~~L~~--~G~~vi~P~~g~lA~~g~~G~Grm~e~~~I~~~v~~~~~~~~~~~l~gkkvLIT-------- 262 (475)
T PRK13982 193 MWNNPATRRNVAQLKR--DGVHMIGPNAGEMAERGEAGVGRMAEPLEIAAAAEALLRPPQPKPLAGRRVLIT-------- 262 (475)
T ss_pred HhcCHHHHHHHHHHHH--CCCEEECCCCCccccCCCcCCCCCCCHHHHHHHHHHHHhhccccccCCCEEEEe--------
Confidence 3455555677777754 444 4454 4454 36665 455555555554432 478888873
Q ss_pred hCCCCChHHHHHH---------------HH-HHHhccccccccccccCCC------ChHHHHHHHHHHHHHHHhhhhccc
Q 024709 78 EYPIPTRAEVADV---------------SE-LVRQQADALMLSGESAMGQ------FPDKALAVLRSVSLRIEKWCREGK 135 (264)
Q Consensus 78 ~~~~ptrae~~dv---------------~~-~v~~g~d~~~ls~eta~G~------yP~eav~~m~~i~~~~E~~~~~~~ 135 (264)
.-|||.-+.+| |. +...|+|..+++|-+..-. .++++.+-|.+-+.+.
T Consensus 263 --aGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~~~p~~v~~i~V~ta~eM~~av~~~-------- 332 (475)
T PRK13982 263 --AGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVDLADPQGVKVIHVESARQMLAAVEAA-------- 332 (475)
T ss_pred --cCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcCCCCCCCceEEEecCHHHHHHHHHhh--------
Confidence 48888776443 22 6678999999998765421 1233333333322211
Q ss_pred ccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcCCcEEEEEcC-------CchHHHHHhhcCCCCcEEEEcCChhhhhhc
Q 024709 136 QHATFEPPPISSSVSAGIPGEICNGAAKIANKLKASALFVYTK-------TGQMASLLSRSRPDCPIFAFAPMSSVRRRL 208 (264)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~A~aIVv~T~-------sG~tA~~iSr~RP~~PIiAvT~~~~~aR~L 208 (264)
++++ +++++- .-.....++|-.-..+.+-+.+|+++...+
T Consensus 333 --------------------------------~~~D-i~I~aAAVaDyrp~~~~~~KiKk~~~~~~~L~L~~nPDIL~~l 379 (475)
T PRK13982 333 --------------------------------LPAD-IAIFAAAVADWRVATEGGQKLKKGAAGPPPLQLVENPDILATI 379 (475)
T ss_pred --------------------------------CCCC-EEEEeccccceeeccccccccCcCCCCCceeeeeeCcHHHHHH
Confidence 1122 122211 001112222211123468888999998888
Q ss_pred ccc-cccEEEEecCCCCHHHHHHHHHHHHHHcCCCCCCCEEEE
Q 024709 209 NLQ-WGLVPFCLNFSDDMESNLNQTFSLLKARGLIKSGDLIIV 250 (264)
Q Consensus 209 ~L~-~GV~P~~~~~~~~~e~~i~~al~~~~~~g~~~~GD~VVv 250 (264)
.-. +.-.++++.+..+.++.++.|.+.++++|. |.||.
T Consensus 380 ~~~~~~~~~~lVGFaaEt~~l~~~A~~KL~~K~~----D~Iva 418 (475)
T PRK13982 380 SKLAENRPPLVIGFAAETEHLIDNARAKLARKGC----DWIVA 418 (475)
T ss_pred hhhcccCCCEEEEEccCchhHHHHHHHHHHHcCC----CEEEE
Confidence 632 111146777766677888888888888654 55553
No 334
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=37.42 E-value=68 Score=30.63 Aligned_cols=107 Identities=17% Similarity=0.158 Sum_probs=66.7
Q ss_pred ceEEEeccCHHHHhcHHHHHhh-cceeeecCCCc---ccCCCCCChHHHHHHHHHHHHHhCCCEEEE-hhh--hh-----
Q 024709 7 IAVIAKIESIDSLKNLNEIILA-SDGAMVARGDL---GAQVPLEQVPSIQEKIVQLCRQLNKPVIVA-SQL--LE----- 74 (264)
Q Consensus 7 ~~iiakIE~~~~~~n~~eI~~~-~Dgi~i~rgdL---~~~~~~~~v~~~qk~ii~~~~~~gkpv~~a-tq~--le----- 74 (264)
+.|.--...-..++.+.+-++. -+.||+.-..| -...|+++-....|++++.|+.+|.+|=.= .++ .|
T Consensus 76 VPValHLDHg~~~e~i~~ai~~GftSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaELG~vgg~e~~~~g 155 (347)
T PRK09196 76 IPVVMHQDHGNSPATCQRAIQLGFTSVMMDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCLGSLETGMGG 155 (347)
T ss_pred CcEEEECCCCCCHHHHHHHHHcCCCEEEecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCccccccc
Confidence 4455555555445555555555 78999986665 234588999999999999999999887310 000 00
Q ss_pred ---hhhhCC----CCChHHHHHHHHHHH-hccccccccccccCCCCh
Q 024709 75 ---SMIEYP----IPTRAEVADVSELVR-QQADALMLSGESAMGQFP 113 (264)
Q Consensus 75 ---SM~~~~----~ptrae~~dv~~~v~-~g~d~~~ls~eta~G~yP 113 (264)
...... .-......+...|+. -|+|++-.|--|+-|.|+
T Consensus 156 ~~~~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk 202 (347)
T PRK09196 156 EEDGHGAEGKLSHDQLLTDPEEAADFVKKTQVDALAIAIGTSHGAYK 202 (347)
T ss_pred cccCcccccccchhhcCCCHHHHHHHHHHhCcCeEhhhhccccCCCC
Confidence 000000 000111234466775 599999999999999995
No 335
>PLN02858 fructose-bisphosphate aldolase
Probab=37.18 E-value=49 Score=37.17 Aligned_cols=103 Identities=17% Similarity=0.232 Sum_probs=67.0
Q ss_pred cceEEEeccCHHHHhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEE------Ehhhhhhhhh
Q 024709 6 NIAVIAKIESIDSLKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIV------ASQLLESMIE 78 (264)
Q Consensus 6 ~~~iiakIE~~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~------atq~leSM~~ 78 (264)
.+.|.....+-..++.+.+=++. -+.||+.- -++|+++-....|++++.|+.+|.+|=. .++ +....
T Consensus 1169 ~vpV~lHLDHg~~~~~i~~ai~~Gf~SVM~Dg----S~l~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v~g~e--~~~~~ 1242 (1378)
T PLN02858 1169 SVPITVHFDHGTSKHELLEALELGFDSVMVDG----SHLSFTENISYTKSISSLAHSKGLMVEAELGRLSGTE--DGLTV 1242 (1378)
T ss_pred CCCEEEECCCCCCHHHHHHHHHhCCCEEEEeC----CCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCcc--CCccc
Confidence 34555555555444444444444 78999984 4568899999999999999999998721 111 10000
Q ss_pred CC-CCChHHHHHHHHHHHh-ccccccccccccCCCChH
Q 024709 79 YP-IPTRAEVADVSELVRQ-QADALMLSGESAMGQFPD 114 (264)
Q Consensus 79 ~~-~ptrae~~dv~~~v~~-g~d~~~ls~eta~G~yP~ 114 (264)
.. .-...+..+...|+.. |+|++-.+--|+.|.||-
T Consensus 1243 ~~~~~~~T~p~~a~~Fv~~TgvD~LAvaiGt~HG~Y~~ 1280 (1378)
T PLN02858 1243 EEYEAKLTDVDQAKEFIDETGIDALAVCIGNVHGKYPA 1280 (1378)
T ss_pred cccccCCCCHHHHHHHHHhcCCcEEeeecccccccCCC
Confidence 00 0001122455777764 999999999999999974
No 336
>PF02110 HK: Hydroxyethylthiazole kinase family; InterPro: IPR000417 Thiamine pyrophosphate (TPP), a required cofactor for many enzymes in the cell, is synthesised de novo in Salmonella typhimurium []. Five kinase activities have been implicated in TPP synthesis, which involves joining a 4-methyl-5-(beta-hydroxyethyl)thiazole (THZ) moiety and a 4-amino-5- hydroxymethyl-2-methylpyrimidine (HMP) moiety [, ]. THZ kinase (2.7.1.50 from EC) activity is involved in the salvage synthesis of TH-P from the thiazole: 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate + 4-4-methyl-5-(2-phosphonooxyethyl)-thiazole = pyrophosphate + thiamin monophosphate Hydroxyethylthiazole kinase expression is regulated at the mRNA level by intracellular thiamin pyrophosphate [].; GO: 0004417 hydroxyethylthiazole kinase activity, 0009228 thiamine biosynthetic process; PDB: 1EKK_A 1ESQ_C 1C3Q_B 1ESJ_A 1EKQ_B 3HPD_A 3DZV_A 3NL5_A 3NL2_A 3NM1_A ....
Probab=37.08 E-value=61 Score=29.35 Aligned_cols=45 Identities=18% Similarity=0.318 Sum_probs=35.2
Q ss_pred HhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEE
Q 024709 19 LKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIV 68 (264)
Q Consensus 19 ~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~ 68 (264)
.+-.+|+.+.+|++.|.=|-| -++-....+...+.+++.|||+++
T Consensus 40 ~~E~~e~~~~a~al~iNiGTl-----~~~~~~~m~~A~~~A~~~~~PvVL 84 (246)
T PF02110_consen 40 PEEVEEFASIADALVINIGTL-----TDERIEAMKKAAKAANELGIPVVL 84 (246)
T ss_dssp TTTHHHHHHCTSEEEEESTTS-----SHHHHHHHHHHHHHHHHTT--EEE
T ss_pred HHHHHHHHHHcCEEEEECCCC-----CHhHHHHHHHHHHHHHHcCCCEEE
Confidence 456788999999999976644 356678889999999999999997
No 337
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=37.07 E-value=3.2e+02 Score=26.24 Aligned_cols=126 Identities=13% Similarity=0.164 Sum_probs=69.9
Q ss_pred HHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhhc
Q 024709 54 KIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCRE 133 (264)
Q Consensus 54 ~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~~ 133 (264)
-+...|+..|.|+.+. .|..+....+.+.-..|++.+...+ .+-+++....++.++- .++..
T Consensus 130 alA~~a~~~G~~~~Iv-----------vp~~~~~~k~~~i~~~GA~Vi~v~~------~~~~~~~~a~~~~~~~-g~~~v 191 (399)
T PRK08206 130 GVAWAAQQLGQKAVIY-----------MPKGSSEERVDAIRALGAECIITDG------NYDDSVRLAAQEAQEN-GWVVV 191 (399)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEeCC------CHHHHHHHHHHHHHHc-CCEEe
Confidence 4567899999999983 3433334445667789999766542 3456666665543321 11110
Q ss_pred ccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcC-----CcEEEEEcCCchHHHHHhh----c-CC-CCcEEEEcCCh
Q 024709 134 GKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLK-----ASALFVYTKTGQMASLLSR----S-RP-DCPIFAFAPMS 202 (264)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~-----A~aIVv~T~sG~tA~~iSr----~-RP-~~PIiAvT~~~ 202 (264)
.. ..| ++ +...+..+.+-...-+.++.++++ .+.||+.+-+|.+.--+++ + ++ ...|+++-|..
T Consensus 192 ~~---~~~-~~-~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~g 266 (399)
T PRK08206 192 QD---TAW-EG-YEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPDQ 266 (399)
T ss_pred cC---ccc-cC-cccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCCC
Confidence 00 000 11 110011222333445556666653 5899999999988766543 2 33 55688887744
No 338
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=37.03 E-value=32 Score=28.29 Aligned_cols=33 Identities=15% Similarity=0.305 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCchHHHHH-----hhcCCCCcEEEEcCCh
Q 024709 169 KASALFVYTKTGQMASLL-----SRSRPDCPIFAFAPMS 202 (264)
Q Consensus 169 ~A~aIVv~T~sG~tA~~i-----Sr~RP~~PIiAvT~~~ 202 (264)
+-+.+|++|.||.|...+ +|-| .+|++++|.+.
T Consensus 79 ~~D~~i~iS~sG~t~~~~~~~~~a~~~-g~~ii~iT~~~ 116 (154)
T TIGR00441 79 KGDVLLGISTSGNSKNVLKAIEAAKDK-GMKTITLAGKD 116 (154)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence 347899999999986644 3444 69999999754
No 339
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=36.64 E-value=50 Score=31.71 Aligned_cols=59 Identities=20% Similarity=0.338 Sum_probs=46.9
Q ss_pred eEEEeccCHHHHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEE
Q 024709 8 AVIAKIESIDSLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVA 69 (264)
Q Consensus 8 ~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~a 69 (264)
.+.+-||-..-.-|||+.++-+|-|+.|-|=+=-.--..++|. .+.+.|++++||||..
T Consensus 264 ~l~~Gi~iV~~~~~le~~v~daDLVITGEGr~D~Qs~~GK~pi---gVA~~Akk~~vPvIai 322 (378)
T COG1929 264 ELKSGIEIVLEATNLEDAVKDADLVITGEGRIDSQSLHGKTPI---GVAKLAKKYGVPVIAI 322 (378)
T ss_pred cccccHHHHHHHhCHHHhhccCCEEEeCCCcccccccCCccch---HHHHhhhhhCCCEEEE
Confidence 3455566666678899999999999999888766666677776 5678899999999973
No 340
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=36.48 E-value=3.3e+02 Score=24.75 Aligned_cols=174 Identities=18% Similarity=0.248 Sum_probs=87.6
Q ss_pred HHhcHHHHHhh-cceeeecC-CCcccCCCC-CChHHHHHHHHHHHHH-hCCCEEEEhhhhhhhhhCCCCChHHHHHHHHH
Q 024709 18 SLKNLNEIILA-SDGAMVAR-GDLGAQVPL-EQVPSIQEKIVQLCRQ-LNKPVIVASQLLESMIEYPIPTRAEVADVSEL 93 (264)
Q Consensus 18 ~~~n~~eI~~~-~Dgi~i~r-gdL~~~~~~-~~v~~~qk~ii~~~~~-~gkpv~~atq~leSM~~~~~ptrae~~dv~~~ 93 (264)
|+++.+.+.+- .|||||-= +|.-...+. ++...+...++...++ .+.|+++ |+|- ..|.- . ++-|
T Consensus 31 A~~ea~~l~~~GvDgiiveN~~D~Py~~~~~~etvaaM~~i~~~v~~~~~~p~GV--nvL~-----nd~~a--a--laiA 99 (254)
T PF03437_consen 31 AVREAEALEEGGVDGIIVENMGDVPYPKRVGPETVAAMARIAREVRREVSVPVGV--NVLR-----NDPKA--A--LAIA 99 (254)
T ss_pred HHHHHHHHHHCCCCEEEEecCCCCCccCCCCHHHHHHHHHHHHHHHHhCCCCEEe--eeec-----CCCHH--H--HHHH
Confidence 45555555555 89999975 665333222 3445555666666554 5899998 4441 12221 1 2344
Q ss_pred HHhccccccccccccCCCC----------hHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCCCCCCCchHHHHHHHHH
Q 024709 94 VRQQADALMLSGESAMGQF----------PDKALAVLRSVSLRIEKWCREGKQHATFEPPPISSSVSAGIPGEICNGAAK 163 (264)
Q Consensus 94 v~~g~d~~~ls~eta~G~y----------P~eav~~m~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~ 163 (264)
...|+|++=. |.-.|.| ..|.++.-++|= ++ . +-+.....+.- .+... ..+...+..
T Consensus 100 ~A~ga~FIRv--~~~~g~~~~d~G~~~~~a~e~~r~R~~l~--a~-v----~ilaDV~~kh~-~~l~~---~~~~~~~~~ 166 (254)
T PF03437_consen 100 AATGADFIRV--NVFVGAYVTDEGIIEGCAGELLRYRKRLG--AD-V----KILADVHVKHS-SPLAT---RDLEEAAKD 166 (254)
T ss_pred HHhCCCEEEe--cCEEceecccCccccccHHHHHHHHHHcC--CC-e----EEEeeechhhc-ccCCC---CCHHHHHHH
Confidence 5577777643 1222222 222222222210 11 0 00111111100 01111 124445556
Q ss_pred HHHhcCCcEEEEE-cCCch--HHHHHhhc---CCCCcEEEEc--CChhhhhhcccccccEE
Q 024709 164 IANKLKASALFVY-TKTGQ--MASLLSRS---RPDCPIFAFA--PMSSVRRRLNLQWGLVP 216 (264)
Q Consensus 164 lA~~l~A~aIVv~-T~sG~--tA~~iSr~---RP~~PIiAvT--~~~~~aR~L~L~~GV~P 216 (264)
+++...++++++- +.||. +...+.+. .| .|++.-| +.+.+.+.|...-|++-
T Consensus 167 a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~-~PVlvGSGvt~~Ni~~~l~~ADG~IV 226 (254)
T PF03437_consen 167 AVERGGADAVIVTGKATGEPPDPEKLKRVREAVP-VPVLVGSGVTPENIAEYLSYADGAIV 226 (254)
T ss_pred HHHhcCCCEEEECCcccCCCCCHHHHHHHHhcCC-CCEEEecCCCHHHHHHHHHhCCEEEE
Confidence 6678889876654 34555 34444444 45 7999866 45667777888888765
No 341
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=36.40 E-value=55 Score=30.59 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=34.7
Q ss_pred HHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhh
Q 024709 22 LNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLES 75 (264)
Q Consensus 22 ~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leS 75 (264)
++.+++. .+||++. -+|.-.+|......++++.+.|.||+++||-.+-
T Consensus 226 l~~~~~~g~~GiVl~------~~G~Gn~p~~~~~~l~~a~~~gi~VV~~Sq~~~G 274 (323)
T cd00411 226 VRAFLRAGYKGIVLA------GYGAGNVPTDLIDELEEAAERGVVVVNSTQCEEG 274 (323)
T ss_pred HHHHHhCCCCEEEEE------eECCCCCCHHHHHHHHHHHHCCCEEEEecCCCCC
Confidence 4555554 7899886 4455555556677788888999999999987544
No 342
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=36.25 E-value=60 Score=28.95 Aligned_cols=44 Identities=14% Similarity=0.233 Sum_probs=32.5
Q ss_pred hcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEE
Q 024709 20 KNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIV 68 (264)
Q Consensus 20 ~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~ 68 (264)
+.++|+++.+|++.|+.|=|+ .+........++.++++++|+++
T Consensus 41 ~e~~~~~~~~~al~ik~G~l~-----~~~~~~i~~~~~~~~~~~~pvVl 84 (249)
T TIGR00694 41 EEVAELAKIAGALVINIGTLD-----KESIEAMIAAGKSANELGVPVVL 84 (249)
T ss_pred HHHHHHHHHcCceEEeCCCCC-----HHHHHHHHHHHHHHHhcCCCEEE
Confidence 446677777999999999662 23455556667778889999886
No 343
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=36.07 E-value=97 Score=28.07 Aligned_cols=62 Identities=24% Similarity=0.467 Sum_probs=39.0
Q ss_pred HHHHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHH
Q 024709 16 IDSLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVA 88 (264)
Q Consensus 16 ~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~ 88 (264)
.+.++.+++.++-+|.+=| |+.|++-..++=..+-+.=++.++.++.|||+ +.|+-...|++
T Consensus 82 ~~~l~~L~~~l~~e~VvAi--GEiGLe~~t~~E~evf~~QL~LA~e~dvPviV---------HTPr~nK~e~t 143 (254)
T COG1099 82 EEVLEELEELLSNEDVVAI--GEIGLEEATDEEKEVFREQLELARELDVPVIV---------HTPRRNKKEAT 143 (254)
T ss_pred HHHHHHHHhhcccCCeeEe--eecccccCCHHHHHHHHHHHHHHHHcCCcEEE---------eCCCCcchhHH
Confidence 3456667777776666666 55555554432222223335678999999998 55777777753
No 344
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=36.06 E-value=1e+02 Score=24.14 Aligned_cols=39 Identities=8% Similarity=-0.025 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCcEEEEEcCCch------HHHHHhhcCCCCcEEEEc
Q 024709 160 GAAKIANKLKASALFVYTKTGQ------MASLLSRSRPDCPIFAFA 199 (264)
Q Consensus 160 aAv~lA~~l~A~aIVv~T~sG~------tA~~iSr~RP~~PIiAvT 199 (264)
..++.|++.+++.||+-|+.+. ++..+.+ +-+||++.+=
T Consensus 94 ~I~~~a~~~~~DLIV~Gs~~~~~~~lgSva~~v~~-~a~~pVLvv~ 138 (144)
T PRK15118 94 VLVDAIKKYDMDLVVCGHHQDFWSKLMSSARQLIN-TVHVDMLIVP 138 (144)
T ss_pred HHHHHHHHhCCCEEEEeCcccHHHHHHHHHHHHHh-hCCCCEEEec
Confidence 4456788999999999888432 2222223 3448888773
No 345
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=35.89 E-value=1.8e+02 Score=26.82 Aligned_cols=124 Identities=16% Similarity=0.113 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHH----HHHHHHHH---hccccccccccccCCCChHHHHHHHHHH
Q 024709 51 IQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEV----ADVSELVR---QQADALMLSGESAMGQFPDKALAVLRSV 123 (264)
Q Consensus 51 ~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~----~dv~~~v~---~g~d~~~ls~eta~G~yP~eav~~m~~i 123 (264)
+.+++++..++.|+||+. .--|.++ .--+.++. .|+|++.+++ ..|. .+|...
T Consensus 74 ~l~~~i~~l~~~g~~Vil------------D~K~~DI~nTv~~ya~a~~~~~~g~DavTVhp--~~G~------d~l~~~ 133 (278)
T PRK00125 74 QLERTIAYLREAGVLVIA------------DAKRGDIGSTAEAYAKAAFESPLEADAVTVSP--YMGF------DSLEPY 133 (278)
T ss_pred HHHHHHHHHHHCCCcEEE------------EeecCChHHHHHHHHHHHhcCccCCcEEEECC--cCCH------HHHHHH
Confidence 456789999999999997 2223322 12233443 6788888874 3343 334443
Q ss_pred HHHHHhh---hhcccccccCCCCC---C---CCCCCCCchHHHHHHHHHHHH----hcCCcEEEEEcCCchHHHHHhhcC
Q 024709 124 SLRIEKW---CREGKQHATFEPPP---I---SSSVSAGIPGEICNGAAKIAN----KLKASALFVYTKTGQMASLLSRSR 190 (264)
Q Consensus 124 ~~~~E~~---~~~~~~~~~~~~~~---~---~~~~~~~~~~aIA~aAv~lA~----~l~A~aIVv~T~sG~tA~~iSr~R 190 (264)
...+++. ..-.- .-+.+. + ......++.+.++.-+....+ ..+...+||-++.+.-++.+.+.-
T Consensus 134 ~~~~~~~~k~vfVlv---lTSnp~s~~lq~~~~~~~~~l~~~V~~~a~~~~~~~~~~~g~~G~VVgaT~p~e~~~iR~~~ 210 (278)
T PRK00125 134 LEYAEEHGKGVFVLC---RTSNPGGSDLQFLRTADGRPLYQHVADLAAALNNLGNCGYGSIGLVVGATFPPELAAVRKIL 210 (278)
T ss_pred HHHHHhcCCEEEEEE---eCCCCCHHHHHhhhccCCCcHHHHHHHHHHHHhccccCCCCCCEEEECCCCHHHHHHHHHhC
Confidence 3333221 00000 000000 0 000011344555554444433 356678777776667677776665
Q ss_pred CCCcEEE
Q 024709 191 PDCPIFA 197 (264)
Q Consensus 191 P~~PIiA 197 (264)
|+.||++
T Consensus 211 ~~~~iL~ 217 (278)
T PRK00125 211 GGMPLLI 217 (278)
T ss_pred CCCeEEe
Confidence 6655543
No 346
>PRK08246 threonine dehydratase; Provisional
Probab=35.73 E-value=3.5e+02 Score=24.82 Aligned_cols=123 Identities=13% Similarity=0.131 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHh
Q 024709 50 SIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEK 129 (264)
Q Consensus 50 ~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~ 129 (264)
..=.-+...|++.|.|+.+-. | ....-.-+...-..|++.+...+ .| .++++...++.++- .
T Consensus 78 N~g~a~A~~a~~~G~~~~iv~---------p--~~~~~~k~~~~~~~GA~V~~~~~-----~~-~~~~~~a~~~~~~~-g 139 (310)
T PRK08246 78 NAGLAVAYAAAALGVPATVFV---------P--ETAPPAKVARLRALGAEVVVVGA-----EY-ADALEAAQAFAAET-G 139 (310)
T ss_pred HHHHHHHHHHHHcCCCEEEEE---------C--CCCcHHHHHHHHHCCCEEEEeCC-----CH-HHHHHHHHHHHHhc-C
Confidence 344556778999999999832 2 22222234456678999776643 22 34544444332211 1
Q ss_pred hhhcccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhc-CCcEEEEEcCCchHHHHHhh-cCCCCcEEEEcCCh
Q 024709 130 WCREGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKL-KASALFVYTKTGQMASLLSR-SRPDCPIFAFAPMS 202 (264)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l-~A~aIVv~T~sG~tA~~iSr-~RP~~PIiAvT~~~ 202 (264)
+ ++..+... +.. .+.-...+.++.+++ ..+.||+.+-+|.++--+++ +++...|+++-+..
T Consensus 140 ~---------~~~~~~~n--~~~-i~g~~t~~~Ei~eq~~~~D~iv~~vG~GG~~~Gi~~~~~~~~~vi~ve~~~ 202 (310)
T PRK08246 140 A---------LLCHAYDQ--PEV-LAGAGTLGLEIEEQAPGVDTVLVAVGGGGLIAGIAAWFEGRARVVAVEPEG 202 (310)
T ss_pred C---------EeCCCCCC--hhh-hcchHHHHHHHHHhcCCCCEEEEecCccHHHHHHHHHhcCCCEEEEEeeCC
Confidence 1 11111111 111 111233455666666 47899999999998887765 45667899998754
No 347
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=35.71 E-value=81 Score=28.70 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=17.0
Q ss_pred ChHHHHHHHHHHHHHhCCCEEE
Q 024709 47 QVPSIQEKIVQLCRQLNKPVIV 68 (264)
Q Consensus 47 ~v~~~qk~ii~~~~~~gkpv~~ 68 (264)
+....-+++++..+++|+||+.
T Consensus 70 ~gi~~l~~~~~~~~~~g~~Vil 91 (261)
T TIGR02127 70 EGFKALEEVIAHARSLGLPVLA 91 (261)
T ss_pred HHHHHHHHHHHHHHHCCCeEEE
Confidence 4445567777999999999996
No 348
>PRK06260 threonine synthase; Validated
Probab=35.54 E-value=3.1e+02 Score=26.12 Aligned_cols=70 Identities=13% Similarity=0.149 Sum_probs=43.7
Q ss_pred CCCchHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHhhc--CCCCcEEEEcCChh--hhhh-cccccccEEEEec
Q 024709 150 SAGIPGEICNGAAKIANKLKASALFVYTKTGQMASLLSRS--RPDCPIFAFAPMSS--VRRR-LNLQWGLVPFCLN 220 (264)
Q Consensus 150 ~~~~~~aIA~aAv~lA~~l~A~aIVv~T~sG~tA~~iSr~--RP~~PIiAvT~~~~--~aR~-L~L~~GV~P~~~~ 220 (264)
..+..+.-+...+..|.+.+++.|+ ...||+++..+|.| +...|.+.+.|... ..+. +....|..-+.++
T Consensus 95 TGSfKdRga~~~v~~a~~~g~~~vv-~aSsGN~g~alA~~aa~~G~~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~ 169 (397)
T PRK06260 95 TGSFKDRGMTVGVTKALELGVKTVA-CASTGNTSASLAAYAARAGLKCYVLLPAGKVALGKLAQALLHGAKVLEVD 169 (397)
T ss_pred CcCcHHHHHHHHHHHHHHcCCCEEE-EeCCcHHHHHHHHHHHHcCCcEEEEEeCCCccHHHHHHHHhcCCEEEEEC
Confidence 3445566666667777778887554 46889988877654 45678888887542 1111 1224677666664
No 349
>COG1839 Uncharacterized conserved protein [Function unknown]
Probab=35.39 E-value=2.7e+02 Score=23.42 Aligned_cols=130 Identities=15% Similarity=0.189 Sum_probs=76.0
Q ss_pred CCCChHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcCC-cEEEEEcCCchHHHHHh
Q 024709 109 MGQFPDKALAVLRSVSLRIEKWCREGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLKA-SALFVYTKTGQMASLLS 187 (264)
Q Consensus 109 ~G~yP~eav~~m~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~A-~aIVv~T~sG~tA~~iS 187 (264)
.+.| +.+|+-+.+....+-..+...-.+..-..+++-...-+ .+.+-..|.+.|.++.| ...++|.+.|.....+-
T Consensus 22 qshF-IkTVeDL~ealvt~vP~~kfgiAf~EAsg~rLvR~~GN--D~eL~~lA~ena~~I~AGHvFVI~lrna~PINvLn 98 (162)
T COG1839 22 QSHF-IKTVEDLYEALVTAVPGLKFGIAFNEASGPRLVRYTGN--DEELVKLAIENALKIGAGHVFVILLRNAYPINVLN 98 (162)
T ss_pred echh-heeHHHHHHHHHhcCCCceEEEEeecccCCeeEEecCC--cHHHHHHHHHHHHHhcCCcEEEEEecCccchHHHH
Confidence 3556 67777777766554432222111111111222211112 36788888999999998 58899999999877765
Q ss_pred hcC--CC-CcEEEEcCChhh--hhhcccccccEEEEecC---CCCHHHHHHHHHHHHHHcCC
Q 024709 188 RSR--PD-CPIFAFAPMSSV--RRRLNLQWGLVPFCLNF---SDDMESNLNQTFSLLKARGL 241 (264)
Q Consensus 188 r~R--P~-~PIiAvT~~~~~--aR~L~L~~GV~P~~~~~---~~~~e~~i~~al~~~~~~g~ 241 (264)
.-+ |. |-|++.|.|+-- .-....-|||..+.-.. .-+.|+-+.+-.+++.+-|+
T Consensus 99 ~iK~vpeV~~I~~ATANP~qVIVa~te~grgvlGVvDG~sp~gvE~d~d~~~Rr~~lr~IgY 160 (162)
T COG1839 99 AIKNVPEVCRIYAATANPLQVIVAETEQGRGVLGVVDGYSPLGVETDEDIAERRELLRKIGY 160 (162)
T ss_pred HHhcChhhheEEeecCCCeEEEEEEcCCCceEEEEecCCCCcccccHHHHHHHHHHHHHhcc
Confidence 433 44 678888887631 12233556777764332 23455556666677777664
No 350
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=35.39 E-value=1.5e+02 Score=28.40 Aligned_cols=82 Identities=17% Similarity=0.182 Sum_probs=48.3
Q ss_pred EEEeccCHHHHhcHHHHHhh-cceeeecCCCcccCCCCCC-hHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHH
Q 024709 9 VIAKIESIDSLKNLNEIILA-SDGAMVARGDLGAQVPLEQ-VPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAE 86 (264)
Q Consensus 9 iiakIE~~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~-v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae 86 (264)
+..++......+..+.+++. +|.|.+.-..-........ -+ ..+.+.+++.++||+. . ...|..
T Consensus 134 v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~---~~i~~~ik~~~ipVIa-G---------~V~t~e- 199 (368)
T PRK08649 134 VAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEP---LNLKEFIYELDVPVIV-G---------GCVTYT- 199 (368)
T ss_pred EEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCH---HHHHHHHHHCCCCEEE-e---------CCCCHH-
Confidence 44455555677777888777 8999984221111111111 12 3356666678999986 2 133433
Q ss_pred HHHHHHHHHhcccccccccc
Q 024709 87 VADVSELVRQQADALMLSGE 106 (264)
Q Consensus 87 ~~dv~~~v~~g~d~~~ls~e 106 (264)
+...++..|+|+||.+.+
T Consensus 200 --~A~~l~~aGAD~V~VG~G 217 (368)
T PRK08649 200 --TALHLMRTGAAGVLVGIG 217 (368)
T ss_pred --HHHHHHHcCCCEEEECCC
Confidence 345666789999999743
No 351
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=35.37 E-value=87 Score=26.35 Aligned_cols=54 Identities=17% Similarity=0.153 Sum_probs=42.1
Q ss_pred CHHHHhcHHHHHhh--cce--eeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEE
Q 024709 15 SIDSLKNLNEIILA--SDG--AMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIV 68 (264)
Q Consensus 15 ~~~~~~n~~eI~~~--~Dg--i~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~ 68 (264)
+..+++++++.+.. .|. ||+|=.|+....+.+++..-.+.+++.++..|..+++
T Consensus 56 t~~~~~rl~~~l~~~~pd~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~il 113 (191)
T PRK10528 56 SQQGLARLPALLKQHQPRWVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLL 113 (191)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 34677888886643 565 5678889877777888889999999999998877765
No 352
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=35.28 E-value=4e+02 Score=25.28 Aligned_cols=99 Identities=13% Similarity=0.098 Sum_probs=55.0
Q ss_pred HHHHhcHHHHHhh-----cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhh--hhhhhhCCCCChHHHH
Q 024709 16 IDSLKNLNEIILA-----SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQL--LESMIEYPIPTRAEVA 88 (264)
Q Consensus 16 ~~~~~n~~eI~~~-----~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~--leSM~~~~~ptrae~~ 88 (264)
.++|.++..++.. +|||++.|+ +|.+.. .-+..+++.+++-.- .++=.....|......
T Consensus 45 ~~~l~~~K~lv~~~l~~~asaILld~~-----yG~~a~---------~~~~~~~GLil~~e~tg~d~t~~gr~~~~~~~~ 110 (340)
T PRK12858 45 YTDLVDFKLAVSEALTPYASAILLDPE-----YGLPAA---------KVRDPNCGLLLSYEKTGYDATAPGRLPDLLDNW 110 (340)
T ss_pred hhhHHHHHHHHHHHHhhCCCEEEEccc-----cChhhh---------cccCCCCCeEEEecccccccCCCCCCccccccc
Confidence 4477777665544 899999862 222111 001246777776210 1111111133333345
Q ss_pred HHHHHHHhccccccccccccCC-CCh----HHHHHHHHHHHHHHHhh
Q 024709 89 DVSELVRQQADALMLSGESAMG-QFP----DKALAVLRSVSLRIEKW 130 (264)
Q Consensus 89 dv~~~v~~g~d~~~ls~eta~G-~yP----~eav~~m~~i~~~~E~~ 130 (264)
.+-.++..|+|+|-+.- -.| .++ .+-.+.+.++..+++++
T Consensus 111 sve~a~~~GAdAVk~lv--~~~~d~~~~~~~~~~~~l~rv~~ec~~~ 155 (340)
T PRK12858 111 SVRRIKEAGADAVKLLL--YYRPDEDDAINDRKHAFVERVGAECRAN 155 (340)
T ss_pred cHHHHHHcCCCEEEEEE--EeCCCcchHHHHHHHHHHHHHHHHHHHc
Confidence 67889999999987742 222 224 35566688888887764
No 353
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=35.24 E-value=77 Score=27.91 Aligned_cols=77 Identities=12% Similarity=0.172 Sum_probs=49.4
Q ss_pred ccCHHHHhcHHHHHhhcceeeecCCCcc--------cCCCC--CChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCC
Q 024709 13 IESIDSLKNLNEIILASDGAMVARGDLG--------AQVPL--EQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIP 82 (264)
Q Consensus 13 IE~~~~~~n~~eI~~~~Dgi~i~rgdL~--------~~~~~--~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~p 82 (264)
.-++++++.+.++.+.-+.++||=|=-. .+.|. --.|..-..+++.|+++|.|.+= -...|
T Consensus 48 l~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~~~~~vi~~a~~~~i~~iP---------G~~Tp 118 (212)
T PRK05718 48 LRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPGLTPPLLKAAQEGPIPLIP---------GVSTP 118 (212)
T ss_pred cCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEeC---------CCCCH
Confidence 4577888888888877566777744211 11111 01122335899999999999982 11234
Q ss_pred ChHHHHHHHHHHHhccccccc
Q 024709 83 TRAEVADVSELVRQQADALML 103 (264)
Q Consensus 83 trae~~dv~~~v~~g~d~~~l 103 (264)
| | +..+...|+|.+=+
T Consensus 119 t--E---i~~a~~~Ga~~vKl 134 (212)
T PRK05718 119 S--E---LMLGMELGLRTFKF 134 (212)
T ss_pred H--H---HHHHHHCCCCEEEE
Confidence 3 3 57899999999988
No 354
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=34.93 E-value=1.2e+02 Score=26.42 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=34.0
Q ss_pred cceEEEeccCHHHHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHh-CCCEEEEh
Q 024709 6 NIAVIAKIESIDSLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQL-NKPVIVAS 70 (264)
Q Consensus 6 ~~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~-gkpv~~at 70 (264)
.+.+-+.-|.... +|++++++-.|.|+-+- +. +..-..+.+.|.++ ++|++.++
T Consensus 96 ~v~v~~~~~~i~~-~~~~~~~~~~DvVI~a~---------D~-~~~r~~l~~~~~~~~~~p~I~~~ 150 (212)
T PRK08644 96 FVEIEAHNEKIDE-DNIEELFKDCDIVVEAF---------DN-AETKAMLVETVLEHPGKKLVAAS 150 (212)
T ss_pred CCEEEEEeeecCH-HHHHHHHcCCCEEEECC---------CC-HHHHHHHHHHHHHhCCCCEEEee
Confidence 3444333333333 56777777777777652 22 33445788999999 99999874
No 355
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=34.89 E-value=58 Score=30.70 Aligned_cols=48 Identities=15% Similarity=0.220 Sum_probs=34.3
Q ss_pred HHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhh
Q 024709 22 LNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLES 75 (264)
Q Consensus 22 ~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leS 75 (264)
++..++. .+||++. -+|.-.+|.-....++++.+.|+||+++||..+-
T Consensus 228 l~~~~~~~~~GiVl~------~~G~Gn~p~~~~~~l~~a~~~Gi~VV~~Sq~~~G 276 (336)
T TIGR00519 228 IRNYLSKGYKGIVIE------GTGLGHAPQNKLQELQEASDRGVVVVMTTQCLNG 276 (336)
T ss_pred HHHHHhCCCCEEEEe------eECCCCCCHHHHHHHHHHHHCCCEEEEeCCCCCC
Confidence 4555554 7899885 3444444444577788899999999999997654
No 356
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=34.60 E-value=2.7e+02 Score=25.23 Aligned_cols=42 Identities=17% Similarity=0.268 Sum_probs=30.5
Q ss_pred HHHhcHHHHHhh--cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEE
Q 024709 17 DSLKNLNEIILA--SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIV 68 (264)
Q Consensus 17 ~~~~n~~eI~~~--~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~ 68 (264)
-|++++-+-++. +||++|. || |+ +-.+...++|+++|...|.
T Consensus 104 ~G~e~f~~~~~~aGvdGviip--DL----p~----ee~~~~~~~~~~~gl~~I~ 147 (258)
T PRK13111 104 YGVERFAADAAEAGVDGLIIP--DL----PP----EEAEELRAAAKKHGLDLIF 147 (258)
T ss_pred cCHHHHHHHHHHcCCcEEEEC--CC----CH----HHHHHHHHHHHHcCCcEEE
Confidence 377777555555 8999994 54 43 4567889999999977665
No 357
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=34.53 E-value=1.5e+02 Score=26.78 Aligned_cols=71 Identities=17% Similarity=0.144 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHH-HHHhccccccccccccCCCChHHHHHHHHHHHHH
Q 024709 51 IQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSE-LVRQQADALMLSGESAMGQFPDKALAVLRSVSLR 126 (264)
Q Consensus 51 ~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~-~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~ 126 (264)
--+..++.++++|+-+.++= +|...++.+...+.+++. +...|+|.+.|. +|.=...|.+.-+.++.+.++
T Consensus 119 ~~~~~i~~ak~~G~~v~~~i----~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~-DT~G~~~P~~v~~lv~~l~~~ 190 (275)
T cd07937 119 NLEVAIKAVKKAGKHVEGAI----CYTGSPVHTLEYYVKLAKELEDMGADSICIK-DMAGLLTPYAAYELVKALKKE 190 (275)
T ss_pred HHHHHHHHHHHCCCeEEEEE----EecCCCCCCHHHHHHHHHHHHHcCCCEEEEc-CCCCCCCHHHHHHHHHHHHHh
Confidence 34567888899998776421 233446667777766655 456699999998 898889999888888776543
No 358
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=34.23 E-value=1.1e+02 Score=29.25 Aligned_cols=107 Identities=11% Similarity=0.120 Sum_probs=66.8
Q ss_pred ceEEEeccCHHHHhcHHHHHhh-cceeeecCCCcc---cCCCCCChHHHHHHHHHHHHHhCCCEEEE-hhhh--------
Q 024709 7 IAVIAKIESIDSLKNLNEIILA-SDGAMVARGDLG---AQVPLEQVPSIQEKIVQLCRQLNKPVIVA-SQLL-------- 73 (264)
Q Consensus 7 ~~iiakIE~~~~~~n~~eI~~~-~Dgi~i~rgdL~---~~~~~~~v~~~qk~ii~~~~~~gkpv~~a-tq~l-------- 73 (264)
+.|.--...-.-++.+.+-++. -+.||+.-..|. ...|+++-....|++++.|+.+|.+|=.= .++-
T Consensus 76 VPVaLHLDHg~~~e~i~~Ai~~GFtSVMiDgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVEaELG~igg~e~~~~g 155 (347)
T PRK13399 76 IPICLHQDHGNSPATCQSAIRSGFTSVMMDGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELGCLGSLETGEAG 155 (347)
T ss_pred CcEEEECCCCCCHHHHHHHHhcCCCEEEEeCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEEEEeeeccCccccccc
Confidence 4455555555545555555555 789999877664 34568899999999999999999887310 0000
Q ss_pred --hhhhhCC----CCChHHHHHHHHHHH-hccccccccccccCCCCh
Q 024709 74 --ESMIEYP----IPTRAEVADVSELVR-QQADALMLSGESAMGQFP 113 (264)
Q Consensus 74 --eSM~~~~----~ptrae~~dv~~~v~-~g~d~~~ls~eta~G~yP 113 (264)
+...... .-......+...++. -|+|++-.|--|+-|.|+
T Consensus 156 ~ed~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk 202 (347)
T PRK13399 156 EEDGVGAEGKLSHDQMLTDPDQAVDFVQRTGVDALAIAIGTSHGAYK 202 (347)
T ss_pred ccCCccccccccccccCCCHHHHHHHHHHHCcCEEhhhhccccCCcC
Confidence 0000000 000111234466775 499999999999999994
No 359
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=34.16 E-value=1e+02 Score=27.71 Aligned_cols=51 Identities=10% Similarity=0.193 Sum_probs=34.3
Q ss_pred hcHHHHHhhcceeeecCC--Ccc-------cCCC--CCChHHHHHHHHHHHHHhCCCEEEEh
Q 024709 20 KNLNEIILASDGAMVARG--DLG-------AQVP--LEQVPSIQEKIVQLCRQLNKPVIVAS 70 (264)
Q Consensus 20 ~n~~eI~~~~Dgi~i~rg--dL~-------~~~~--~~~v~~~qk~ii~~~~~~gkpv~~at 70 (264)
+.++++++..||+++.=| |+. -.-+ .++-......+++.|.+.+||+.--.
T Consensus 53 ~~~~~~l~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGIC 114 (254)
T PRK11366 53 SLLEQLLPKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAIC 114 (254)
T ss_pred HHHHHHHHhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEEC
Confidence 456777888999999865 441 0111 12223566799999999999997543
No 360
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=34.15 E-value=1.3e+02 Score=26.26 Aligned_cols=41 Identities=22% Similarity=0.371 Sum_probs=31.9
Q ss_pred HhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEE
Q 024709 19 LKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVA 69 (264)
Q Consensus 19 ~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~a 69 (264)
-+|++++++-.|.|+.+-.+. .....+-+.|+++|+|++.+
T Consensus 102 ~~~~~~~~~~~DvVi~~~d~~----------~~r~~l~~~~~~~~ip~i~~ 142 (228)
T cd00757 102 AENAEELIAGYDLVLDCTDNF----------ATRYLINDACVKLGKPLVSG 142 (228)
T ss_pred HHHHHHHHhCCCEEEEcCCCH----------HHHHHHHHHHHHcCCCEEEE
Confidence 367888888889888873332 45567889999999999985
No 361
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=34.14 E-value=73 Score=28.80 Aligned_cols=42 Identities=14% Similarity=0.290 Sum_probs=32.0
Q ss_pred HHHhcHHHHH-hhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEE
Q 024709 17 DSLKNLNEII-LASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIV 68 (264)
Q Consensus 17 ~~~~n~~eI~-~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~ 68 (264)
.-+..+++.+ +-.|||+|.+.|- ..-...+++++++|.||+.
T Consensus 79 ~Q~~~i~~~ia~~~daIiv~~~d~----------~~~~~~v~~a~~aGIpVv~ 121 (322)
T COG1879 79 KQIAQIEDLIAQGVDAIIINPVDP----------DALTPAVKKAKAAGIPVVT 121 (322)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCh----------hhhHHHHHHHHHCCCcEEE
Confidence 3455565555 4499999998875 3456689999999999997
No 362
>PRK10342 glycerate kinase I; Provisional
Probab=33.80 E-value=80 Score=30.51 Aligned_cols=58 Identities=24% Similarity=0.346 Sum_probs=44.5
Q ss_pred EEEeccCHHHHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEE
Q 024709 9 VIAKIESIDSLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVA 69 (264)
Q Consensus 9 iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~a 69 (264)
+.+-+|-..-+-++|+-++-+|-|+-|=|=+=...-.-|+|. .|.+.|+++||||++-
T Consensus 265 l~~G~d~v~~~~~l~~~l~~ADLVITGEG~~D~QTl~GK~p~---gVa~~A~~~~vPviai 322 (381)
T PRK10342 265 LKSGIEIVTTALNLEEHIHDCTLVITGEGRIDSQSIHGKVPI---GVANVAKKYHKPVIGI 322 (381)
T ss_pred ECCHHHHHHHhcCHHHHhccCCEEEECCCcCcccccCCccHH---HHHHHHHHhCCCEEEE
Confidence 344455555667899999999999999887766666677776 4667899999999983
No 363
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=33.78 E-value=52 Score=26.98 Aligned_cols=41 Identities=15% Similarity=0.218 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccc
Q 024709 50 SIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALML 103 (264)
Q Consensus 50 ~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~l 103 (264)
....++++.|+++|+++.+-| ..+ .++...++..|+|+++-
T Consensus 147 ~~~~~~i~~~~~~g~~v~~wt----------vn~---~~~~~~~~~~GVdgI~T 187 (189)
T cd08556 147 LLTPELVRAAHAAGLKVYVWT----------VND---PEDARRLLALGVDGIIT 187 (189)
T ss_pred hCCHHHHHHHHHcCCEEEEEc----------CCC---HHHHHHHHHCCCCEEec
Confidence 356899999999999999876 112 33456788899999874
No 364
>PRK15452 putative protease; Provisional
Probab=33.69 E-value=4.3e+02 Score=26.00 Aligned_cols=126 Identities=16% Similarity=0.092 Sum_probs=69.4
Q ss_pred HHHHHHHhccccccccccccC-----CCChHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCCCCCCCchHHHHHHHHH
Q 024709 89 DVSELVRQQADALMLSGESAM-----GQFPDKALAVLRSVSLRIEKWCREGKQHATFEPPPISSSVSAGIPGEICNGAAK 163 (264)
Q Consensus 89 dv~~~v~~g~d~~~ls~eta~-----G~yP~eav~~m~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~ 163 (264)
.+..|+..|||+|.+.++.-. +.|..+-++-.-+.|.+.-. +.|-. .+.+. ..... + -...-..
T Consensus 15 ~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~-----kvyvt--~n~i~--~e~el-~-~~~~~l~ 83 (443)
T PRK15452 15 NMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGK-----KFYVV--VNIAP--HNAKL-K-TFIRDLE 83 (443)
T ss_pred HHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCC-----EEEEE--ecCcC--CHHHH-H-HHHHHHH
Confidence 346789999999999877432 46665543333333322111 11111 01110 01111 1 1222244
Q ss_pred HHHhcCCcEEEEEcCCchHHHHHhhcCCCCcEEEEc----CChhhhhhcccccccEEEEecCCCCHHHH
Q 024709 164 IANKLKASALFVYTKTGQMASLLSRSRPDCPIFAFA----PMSSVRRRLNLQWGLVPFCLNFSDDMESN 228 (264)
Q Consensus 164 lA~~l~A~aIVv~T~sG~tA~~iSr~RP~~PIiAvT----~~~~~aR~L~L~~GV~P~~~~~~~~~e~~ 228 (264)
...+++.++|+|-.. ....++.+..|..||.+=| .|...++.+. -+|+.-+..+..-+.+++
T Consensus 84 ~l~~~gvDgvIV~d~--G~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~-~lG~~rvvLSrELsl~EI 149 (443)
T PRK15452 84 PVIAMKPDALIMSDP--GLIMMVREHFPEMPIHLSVQANAVNWATVKFWQ-QMGLTRVILSRELSLEEI 149 (443)
T ss_pred HHHhCCCCEEEEcCH--HHHHHHHHhCCCCeEEEEecccCCCHHHHHHHH-HCCCcEEEECCcCCHHHH
Confidence 556778998777653 4566677778999998854 5777777663 358777766544444443
No 365
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=33.61 E-value=3.2e+02 Score=23.98 Aligned_cols=102 Identities=18% Similarity=0.032 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHhccccccccccccC--CCChHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCCCCCCCchHHHHH
Q 024709 82 PTRAEVADVSELVRQQADALMLSGESAM--GQFPDKALAVLRSVSLRIEKWCREGKQHATFEPPPISSSVSAGIPGEICN 159 (264)
Q Consensus 82 ptrae~~dv~~~v~~g~d~~~ls~eta~--G~yP~eav~~m~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~aIA~ 159 (264)
|+...+.++..|+.+|+|.+-+---... +..--+..+.|..+...+. -....--.+.-...+ +.+.
T Consensus 68 ~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~-g~~lKvIlE~~~L~~----------~ei~- 135 (211)
T TIGR00126 68 TTDVKLYETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACA-GVLLKVIIETGLLTD----------EEIR- 135 (211)
T ss_pred cHHHHHHHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcC-CCeEEEEEecCCCCH----------HHHH-
Q ss_pred HHHHHHHhcCCcEEEEEcCCchH---------HHHHhhcCCCCcEEE
Q 024709 160 GAAKIANKLKASALFVYTKTGQM---------ASLLSRSRPDCPIFA 197 (264)
Q Consensus 160 aAv~lA~~l~A~aIVv~T~sG~t---------A~~iSr~RP~~PIiA 197 (264)
.+++++.+.+|+ ++=|.||.. ..+..-.+.++||-+
T Consensus 136 ~a~~ia~eaGAD--fvKTsTGf~~~gat~~dv~~m~~~v~~~v~IKa 180 (211)
T TIGR00126 136 KACEICIDAGAD--FVKTSTGFGAGGATVEDVRLMRNTVGDTIGVKA 180 (211)
T ss_pred HHHHHHHHhCCC--EEEeCCCCCCCCCCHHHHHHHHHHhccCCeEEE
No 366
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=33.55 E-value=57 Score=27.50 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhcccccccc
Q 024709 50 SIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLS 104 (264)
Q Consensus 50 ~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls 104 (264)
..-+++++.|+++|++++++. . ...|.. +...+...|+|.+.+.
T Consensus 90 ~~~~~~i~~~~~~g~~~~v~~-------~-~~~t~~---e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 90 STIKKAVKAAKKYGKEVQVDL-------I-GVEDPE---KRAKLLKLGVDIVILH 133 (202)
T ss_pred HHHHHHHHHHHHcCCeEEEEE-------e-CCCCHH---HHHHHHHCCCCEEEEc
Confidence 445789999999999999731 0 122333 3345777899998873
No 367
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=33.34 E-value=44 Score=26.77 Aligned_cols=53 Identities=19% Similarity=0.352 Sum_probs=34.1
Q ss_pred cceEEEecc--------CHHHHhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEE
Q 024709 6 NIAVIAKIE--------SIDSLKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVA 69 (264)
Q Consensus 6 ~~~iiakIE--------~~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~a 69 (264)
.+.|+.+-| ..+--+.++.+++. .-+|+++||- ..-+.+++.|++++.|+...
T Consensus 50 RIQiiG~~E~~yl~~l~~~~r~~~l~~l~~~~~P~iIvt~~~-----------~~p~~l~e~a~~~~ipll~t 111 (127)
T PF02603_consen 50 RIQIIGNTESAYLNSLDEEERKERLEKLFSYNPPCIIVTRGL-----------EPPPELIELAEKYNIPLLRT 111 (127)
T ss_dssp SEEEE-HHHHHHHCCS-HHHHCCHHHHHCTTT-S-EEEETTT--------------HHHHHHHHHCT--EEEE
T ss_pred eEEEEcHHHHHHHHHCCHHHHHHHHHHHhCCCCCEEEEECcC-----------CCCHHHHHHHHHhCCcEEEc
Confidence 455555444 34445678888888 8899999986 33468899999999999973
No 368
>PRK14057 epimerase; Provisional
Probab=33.26 E-value=2.4e+02 Score=25.72 Aligned_cols=101 Identities=13% Similarity=0.109 Sum_probs=56.6
Q ss_pred ceEEEeccCHHHHhcHHHHHhhcceeeecCCCcccCCCC---CChHHHHHHHHH---HHHHhCCCEEEEhhhhhhhhhCC
Q 024709 7 IAVIAKIESIDSLKNLNEIILASDGAMVARGDLGAQVPL---EQVPSIQEKIVQ---LCRQLNKPVIVASQLLESMIEYP 80 (264)
Q Consensus 7 ~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~---~~v~~~qk~ii~---~~~~~gkpv~~atq~leSM~~~~ 80 (264)
..+.-+-+| .++.++.++...|.|+| ++++-|. .-.+..-++|.+ .-.++|..+.+. +. .
T Consensus 135 aGlAlnP~T--p~e~i~~~l~~vD~VLv----MtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~Ie-------VD-G 200 (254)
T PRK14057 135 RGISLCPAT--PLDVIIPILSDVEVIQL----LAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIV-------ID-G 200 (254)
T ss_pred eEEEECCCC--CHHHHHHHHHhCCEEEE----EEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEE-------EE-C
Confidence 455555666 57889999999999998 3444443 233333333332 223444333321 01 1
Q ss_pred CCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHH
Q 024709 81 IPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVS 124 (264)
Q Consensus 81 ~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~ 124 (264)
.=+. .-+......|+|.+.+.+--.....+.++++.++++.
T Consensus 201 GI~~---~ti~~l~~aGad~~V~GSalF~~~d~~~~i~~l~~~~ 241 (254)
T PRK14057 201 SLTQ---DQLPSLIAQGIDRVVSGSALFRDDRLVENTRSWRAMF 241 (254)
T ss_pred CCCH---HHHHHHHHCCCCEEEEChHhhCCCCHHHHHHHHHHHH
Confidence 1111 1234567789998888644322346788888887653
No 369
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=33.01 E-value=1.5e+02 Score=26.82 Aligned_cols=76 Identities=22% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHhcHHHHHh-h-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEE--------EEhhhhhhhhhCCCCChH
Q 024709 16 IDSLKNLNEIIL-A-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVI--------VASQLLESMIEYPIPTRA 85 (264)
Q Consensus 16 ~~~~~n~~eI~~-~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~--------~atq~leSM~~~~~ptra 85 (264)
.++++|.-.+++ . ++||.|-=| ..+...|+++.+.|.||. ..+++=.-.+..-...++
T Consensus 90 ~~av~~a~r~~~~aGa~aVkiEd~------------~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a 157 (254)
T cd06557 90 EQALRNAARLMKEAGADAVKLEGG------------AEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEA 157 (254)
T ss_pred HHHHHHHHHHHHHhCCeEEEEcCc------------HHHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHH
Q ss_pred H--HHHHHHHHHhccccccc
Q 024709 86 E--VADVSELVRQQADALML 103 (264)
Q Consensus 86 e--~~dv~~~v~~g~d~~~l 103 (264)
+ +.|.......|+|+++|
T Consensus 158 ~~~i~ra~a~~~AGA~~i~l 177 (254)
T cd06557 158 ERLLEDALALEEAGAFALVL 177 (254)
T ss_pred HHHHHHHHHHHHCCCCEEEE
No 370
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=33.00 E-value=3.2e+02 Score=27.35 Aligned_cols=100 Identities=16% Similarity=0.126 Sum_probs=61.4
Q ss_pred CCcceEEEeccCHHHHhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHh-CC-CEEEEhhhhhhhhhCC
Q 024709 4 LVNIAVIAKIESIDSLKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQL-NK-PVIVASQLLESMIEYP 80 (264)
Q Consensus 4 ~~~~~iiakIE~~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~-gk-pv~~atq~leSM~~~~ 80 (264)
+.+..|.+-+...++++..+.+++. +|.|.|. ..+.-...|...+++.++. +. -.+.|..++
T Consensus 229 ~grL~V~~av~~~~~~~ra~~Lv~aGvd~i~vd--------~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~------- 293 (502)
T PRK07107 229 SKRYVVGAGINTRDYAERVPALVEAGADVLCID--------SSEGYSEWQKRTLDWIREKYGDSVKVGAGNVV------- 293 (502)
T ss_pred ccCeeeeeccChhhHHHHHHHHHHhCCCeEeec--------CcccccHHHHHHHHHHHHhCCCCceEEecccc-------
Confidence 4456677888777888999999988 9998874 1122333445666666654 33 234444333
Q ss_pred CCChHHHHHHHHHHHhccccccccc----------cccCCCChHHHHHHHHHH
Q 024709 81 IPTRAEVADVSELVRQQADALMLSG----------ESAMGQFPDKALAVLRSV 123 (264)
Q Consensus 81 ~ptrae~~dv~~~v~~g~d~~~ls~----------eta~G~yP~eav~~m~~i 123 (264)
. ..|+..++..|+|++..+. -+..|.=++.||.-..+.
T Consensus 294 t-----~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a 341 (502)
T PRK07107 294 D-----REGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKA 341 (502)
T ss_pred C-----HHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHH
Confidence 2 2344678889999998732 344565555555544443
No 371
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=32.90 E-value=4.3e+02 Score=24.99 Aligned_cols=74 Identities=11% Similarity=0.087 Sum_probs=53.3
Q ss_pred CCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHH-HHHhccccccccccccCCCChHHHHHHHHHH
Q 024709 45 LEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSE-LVRQQADALMLSGESAMGQFPDKALAVLRSV 123 (264)
Q Consensus 45 ~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~-~v~~g~d~~~ls~eta~G~yP~eav~~m~~i 123 (264)
.++........++.++++|..+.+.-. ...+-+...+.+++. +...|+|.+.|. +|.=..+|.+.-+.++.+
T Consensus 107 ~~~~~~~~~~~i~~ak~~G~~v~~~~e------da~r~~~~~l~~~~~~~~~~g~~~i~l~-DT~G~~~P~~v~~li~~l 179 (363)
T TIGR02090 107 RDEVLEKAVEAVEYAKEHGLIVEFSAE------DATRTDIDFLIKVFKRAEEAGADRINIA-DTVGVLTPQKMEELIKKL 179 (363)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEEe------ecCCCCHHHHHHHHHHHHhCCCCEEEEe-CCCCccCHHHHHHHHHHH
Confidence 355667777899999999998877431 223444555555554 466799999998 888889999887777776
Q ss_pred HH
Q 024709 124 SL 125 (264)
Q Consensus 124 ~~ 125 (264)
..
T Consensus 180 ~~ 181 (363)
T TIGR02090 180 KE 181 (363)
T ss_pred hc
Confidence 43
No 372
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=32.63 E-value=36 Score=25.99 Aligned_cols=35 Identities=26% Similarity=0.250 Sum_probs=25.4
Q ss_pred HhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEh
Q 024709 26 ILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVAS 70 (264)
Q Consensus 26 ~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~at 70 (264)
++-.|-|+++.+| +...++|.+.|+++|+|+-++.
T Consensus 58 l~~~~lV~~at~d----------~~~n~~i~~~a~~~~i~vn~~D 92 (103)
T PF13241_consen 58 LDGADLVFAATDD----------PELNEAIYADARARGILVNVVD 92 (103)
T ss_dssp CTTESEEEE-SS-----------HHHHHHHHHHHHHTTSEEEETT
T ss_pred HhhheEEEecCCC----------HHHHHHHHHHHhhCCEEEEECC
Confidence 3335556665554 6788999999999999999854
No 373
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=32.38 E-value=2.1e+02 Score=22.68 Aligned_cols=49 Identities=20% Similarity=0.331 Sum_probs=31.4
Q ss_pred ChhhhhhcccccccEE--EEe-cCCCCHHHHHHHHHHHHHHcCCCCCCCEEEEEec
Q 024709 201 MSSVRRRLNLQWGLVP--FCL-NFSDDMESNLNQTFSLLKARGLIKSGDLIIVVSD 253 (264)
Q Consensus 201 ~~~~aR~L~L~~GV~P--~~~-~~~~~~e~~i~~al~~~~~~g~~~~GD~VVvvsG 253 (264)
.....++...-.||-+ ++. +...+..++...+.+++.++|+ ..|++++.
T Consensus 52 ea~~m~~~l~~~gv~~~~I~~e~~s~~T~ena~~~~~~~~~~~~----~~i~lVTs 103 (150)
T cd06259 52 EAEAMARYLIELGVPAEAILLEDRSTNTYENARFSAELLRERGI----RSVLLVTS 103 (150)
T ss_pred HHHHHHHHHHHcCCCHHHeeecCCCCCHHHHHHHHHHHHHhcCC----CeEEEECC
Confidence 3345666666677633 233 3345677778888899999886 55655554
No 374
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=32.25 E-value=42 Score=29.92 Aligned_cols=60 Identities=25% Similarity=0.280 Sum_probs=40.8
Q ss_pred hcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHH
Q 024709 20 KNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSEL 93 (264)
Q Consensus 20 ~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~ 93 (264)
+|+++++.. .|.|+.+- +-......+.+.|+++++|++.+.- .=....||+-++.|+...
T Consensus 93 ~~~~~l~~~~~D~Vvdai----------D~~~~k~~L~~~c~~~~ip~I~s~g----~g~~~dp~~i~i~di~~t 153 (231)
T cd00755 93 DNSEDLLGGDPDFVVDAI----------DSIRAKVALIAYCRKRKIPVISSMG----AGGKLDPTRIRVADISKT 153 (231)
T ss_pred hHHHHHhcCCCCEEEEcC----------CCHHHHHHHHHHHHHhCCCEEEEeC----CcCCCCCCeEEEccEecc
Confidence 567777643 67666652 2234566799999999999997531 223457999888887653
No 375
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=32.05 E-value=1.1e+02 Score=26.10 Aligned_cols=47 Identities=11% Similarity=0.058 Sum_probs=34.1
Q ss_pred HHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhh
Q 024709 22 LNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLL 73 (264)
Q Consensus 22 ~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~l 73 (264)
+.+.++=+|.+++.-+-.. +.-...|+.++++|.++|..-++-+++.
T Consensus 58 l~~al~g~d~v~~~~~~~~-----~~~~~~~~~li~Aa~~agVk~~v~ss~~ 104 (233)
T PF05368_consen 58 LVAALKGVDAVFSVTPPSH-----PSELEQQKNLIDAAKAAGVKHFVPSSFG 104 (233)
T ss_dssp HHHHHTTCSEEEEESSCSC-----CCHHHHHHHHHHHHHHHT-SEEEESEES
T ss_pred HHHHHcCCceEEeecCcch-----hhhhhhhhhHHHhhhccccceEEEEEec
Confidence 3334444899998754332 6778899999999999999999866654
No 376
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=31.95 E-value=3.4e+02 Score=23.52 Aligned_cols=69 Identities=9% Similarity=-0.004 Sum_probs=39.5
Q ss_pred CCchHHHHHHHHHHHHhcC---CcEEEEEcCCchHHHHHhh--cCCCCcEEEEcCChh--hhhhcccccccEEEEec
Q 024709 151 AGIPGEICNGAAKIANKLK---ASALFVYTKTGQMASLLSR--SRPDCPIFAFAPMSS--VRRRLNLQWGLVPFCLN 220 (264)
Q Consensus 151 ~~~~~aIA~aAv~lA~~l~---A~aIVv~T~sG~tA~~iSr--~RP~~PIiAvT~~~~--~aR~L~L~~GV~P~~~~ 220 (264)
.+..+.-+...+..+.+.+ .+.|++. .+|+++..+|. .+...|.+++.|... .-+++...+|...+.++
T Consensus 28 gS~K~R~a~~~l~~a~~~g~~~~~~vv~~-ssGN~g~alA~~a~~~g~~~~v~~p~~~~~~~~~~~~~~Ga~v~~~~ 103 (244)
T cd00640 28 GSFKDRGALNLILLAEEEGKLPKGVIIES-TGGNTGIALAAAAARLGLKCTIVMPEGASPEKVAQMRALGAEVVLVP 103 (244)
T ss_pred CCcHHHHHHHHHHHHHHcCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEEC
Confidence 4555666666666676666 5555554 44787765542 125677777777422 22223344677666654
No 377
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=31.94 E-value=1.5e+02 Score=24.88 Aligned_cols=41 Identities=24% Similarity=0.245 Sum_probs=28.8
Q ss_pred hcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHh-CCCEEEEh
Q 024709 20 KNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQL-NKPVIVAS 70 (264)
Q Consensus 20 ~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~-gkpv~~at 70 (264)
+|++++++-.|-|+.+-.+ +.....+.+.|.+. ++|++.+.
T Consensus 80 ~~~~~~l~~~DlVi~~~d~----------~~~r~~i~~~~~~~~~ip~i~~~ 121 (174)
T cd01487 80 NNLEGLFGDCDIVVEAFDN----------AETKAMLAESLLGNKNKPVVCAS 121 (174)
T ss_pred hhHHHHhcCCCEEEECCCC----------HHHHHHHHHHHHHHCCCCEEEEe
Confidence 5777887777777766222 34556677887777 99999864
No 378
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=31.93 E-value=2.5e+02 Score=24.65 Aligned_cols=85 Identities=15% Similarity=0.251 Sum_probs=60.5
Q ss_pred CHHHHhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHH
Q 024709 15 SIDSLKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSEL 93 (264)
Q Consensus 15 ~~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~ 93 (264)
..++++..+.+... -|.|+++ ++.|.-+ ............+-|++.-| ....|.+. ..+
T Consensus 36 ~~~~~~~~~~~~~~~pDvVild-----ie~p~rd---~~e~~~~~~~~~~~piv~lt-------~~s~p~~i-----~~a 95 (194)
T COG3707 36 AADGLEAVEVCERLQPDVVILD-----IEMPRRD---IIEALLLASENVARPIVALT-------AYSDPALI-----EAA 95 (194)
T ss_pred ecccccchhHHHhcCCCEEEEe-----cCCCCcc---HHHHHHHhhcCCCCCEEEEE-------ccCChHHH-----HHH
Confidence 45566667777777 7888875 5666544 34444555555677777754 56677776 589
Q ss_pred HHhccccccccccccCCCChHHHHHH
Q 024709 94 VRQQADALMLSGESAMGQFPDKALAV 119 (264)
Q Consensus 94 v~~g~d~~~ls~eta~G~yP~eav~~ 119 (264)
+..|+++.++-+=-..|-+|+--+..
T Consensus 96 ~~~Gv~ayivkpi~~~rl~p~L~vA~ 121 (194)
T COG3707 96 IEAGVMAYIVKPLDESRLLPILDVAV 121 (194)
T ss_pred HHcCCeEEEecCcchhhhhHHHHHHH
Confidence 99999999999888889999766654
No 379
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=31.90 E-value=1.7e+02 Score=26.68 Aligned_cols=78 Identities=15% Similarity=0.264 Sum_probs=49.6
Q ss_pred CHHHHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhC-CCEEEEhhhhhhhhhCCCCChHHHHHHHHH
Q 024709 15 SIDSLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLN-KPVIVASQLLESMIEYPIPTRAEVADVSEL 93 (264)
Q Consensus 15 ~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~g-kpv~~atq~leSM~~~~~ptrae~~dv~~~ 93 (264)
-...-++++.|.+.++|.+=.-+=.|+.=....++.-.+..+++.+++. +|+.+-- ..-++.+ +...
T Consensus 149 p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~vGF---------GI~~~e~---~~~~ 216 (259)
T PF00290_consen 149 PTTPEERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAVGF---------GISTPEQ---AKKL 216 (259)
T ss_dssp TTS-HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEEES---------SS-SHHH---HHHH
T ss_pred CCCCHHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhcCcceEEec---------CCCCHHH---HHHH
Confidence 3345678899999988877554445543333567777788888888865 8988733 3334433 3343
Q ss_pred HHhccccccccc
Q 024709 94 VRQQADALMLSG 105 (264)
Q Consensus 94 v~~g~d~~~ls~ 105 (264)
..|+|++...+
T Consensus 217 -~~~aDGvIVGS 227 (259)
T PF00290_consen 217 -AAGADGVIVGS 227 (259)
T ss_dssp -HTTSSEEEESH
T ss_pred -HccCCEEEECH
Confidence 49999999874
No 380
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=31.71 E-value=59 Score=28.60 Aligned_cols=72 Identities=10% Similarity=0.225 Sum_probs=49.8
Q ss_pred CHHHHhcHHHHHhhc-c--eeeecCCCcccCCCCCChH-------------HHHHHHHHHHHHhCCCEEEEhhhhhhhhh
Q 024709 15 SIDSLKNLNEIILAS-D--GAMVARGDLGAQVPLEQVP-------------SIQEKIVQLCRQLNKPVIVASQLLESMIE 78 (264)
Q Consensus 15 ~~~~~~n~~eI~~~~-D--gi~i~rgdL~~~~~~~~v~-------------~~qk~ii~~~~~~gkpv~~atq~leSM~~ 78 (264)
|+.+++.|.++.+.. | .++||=|=. +..+.+. ..-..+++.|+++|.|++--+
T Consensus 48 ~~~a~~~i~~l~~~~~~~p~~~vGaGTV---~~~~~~~~a~~aGA~FivsP~~~~~v~~~~~~~~i~~iPG~-------- 116 (213)
T PRK06552 48 NPFASEVIKELVELYKDDPEVLIGAGTV---LDAVTARLAILAGAQFIVSPSFNRETAKICNLYQIPYLPGC-------- 116 (213)
T ss_pred CccHHHHHHHHHHHcCCCCCeEEeeeeC---CCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHcCCCEECCc--------
Confidence 677888899988764 2 488886632 1222222 234689999999999998422
Q ss_pred CCCCChHHHHHHHHHHHhccccccc
Q 024709 79 YPIPTRAEVADVSELVRQQADALML 103 (264)
Q Consensus 79 ~~~ptrae~~dv~~~v~~g~d~~~l 103 (264)
-.| +++..+...|+|.+-+
T Consensus 117 -~T~-----~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 117 -MTV-----TEIVTALEAGSEIVKL 135 (213)
T ss_pred -CCH-----HHHHHHHHcCCCEEEE
Confidence 133 3457888899999988
No 381
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=31.53 E-value=57 Score=28.32 Aligned_cols=41 Identities=17% Similarity=0.225 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccc
Q 024709 50 SIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALML 103 (264)
Q Consensus 50 ~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~l 103 (264)
.+.+..++.++++|+++++-| . ..| .+...++..|+|+++-
T Consensus 187 ~~~~~~i~~~~~~g~~v~~Wt-------v-n~~-----~~~~~~~~~GVdgi~T 227 (230)
T cd08563 187 LLTEEVVEELKKRGIPVRLWT-------V-NEE-----EDMKRLKDLGVDGIIT 227 (230)
T ss_pred hcCHHHHHHHHHCCCEEEEEe-------c-CCH-----HHHHHHHHCCCCEEeC
Confidence 456899999999999999876 1 122 3446788899999863
No 382
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=31.46 E-value=2.1e+02 Score=25.77 Aligned_cols=69 Identities=9% Similarity=0.157 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHH
Q 024709 48 VPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRI 127 (264)
Q Consensus 48 v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~ 127 (264)
.|..-...+..|-++|||+++.| +.-+.+|...+..+....-=.++.+.=.+.|- ..|.++.+++
T Consensus 77 ~p~~~~~~~~~al~~g~~vVigt---------tg~~~e~~~~l~~aA~~~g~~v~~a~NfSlGv------~ll~~~~~~a 141 (266)
T TIGR00036 77 TPEGVLNHLKFALEHGVRLVVGT---------TGFSEEDKQELADLAEKAGIAAVIAPNFSIGV------NLMFKLLEKA 141 (266)
T ss_pred ChHHHHHHHHHHHHCCCCEEEEC---------CCCCHHHHHHHHHHHhcCCccEEEECcccHHH------HHHHHHHHHH
Confidence 45666889999999999999966 33455666666665444222456654444443 3455555555
Q ss_pred Hhhh
Q 024709 128 EKWC 131 (264)
Q Consensus 128 E~~~ 131 (264)
-+++
T Consensus 142 a~~l 145 (266)
T TIGR00036 142 AKYL 145 (266)
T ss_pred HHhc
Confidence 5544
No 383
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=31.44 E-value=4.3e+02 Score=24.51 Aligned_cols=113 Identities=13% Similarity=0.099 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCC-----hHHHHHHHHHHHhccccccccc------cccCCCChHHH
Q 024709 48 VPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPT-----RAEVADVSELVRQQADALMLSG------ESAMGQFPDKA 116 (264)
Q Consensus 48 v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~pt-----rae~~dv~~~v~~g~d~~~ls~------eta~G~yP~ea 116 (264)
+..+.+++-+ .+..++|+|+. +-. ..++ -.|..+.+..+.+++|++-|+- -...+.+|-..
T Consensus 114 ~~~~~~~l~~-~~~~~~plivs------i~g-~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~ 185 (327)
T cd04738 114 ADAVAKRLKK-RRPRGGPLGVN------IGK-NKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEAL 185 (327)
T ss_pred HHHHHHHHHH-hccCCCeEEEE------EeC-CCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHH
Confidence 3344455433 23368999982 211 1222 2334444455566789988732 12236777665
Q ss_pred HHHHHHHHHHHHhhhhcccccccCCCCCCCCCCCCCch-HHHHHHHHHHHHhcCCcEEEEEcC
Q 024709 117 LAVLRSVSLRIEKWCREGKQHATFEPPPISSSVSAGIP-GEICNGAAKIANKLKASALFVYTK 178 (264)
Q Consensus 117 v~~m~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~-~aIA~aAv~lA~~l~A~aIVv~T~ 178 (264)
.+.++.+.+..... . .. ..+..+...... +.+ ...++.+.+.++++|.++.+
T Consensus 186 ~~iv~av~~~~~~~-~-----~~---~Pv~vKl~~~~~~~~~-~~ia~~l~~aGad~I~~~n~ 238 (327)
T cd04738 186 RELLTAVKEERNKL-G-----KK---VPLLVKIAPDLSDEEL-EDIADVALEHGVDGIIATNT 238 (327)
T ss_pred HHHHHHHHHHHhhc-c-----cC---CCeEEEeCCCCCHHHH-HHHHHHHHHcCCcEEEEECC
Confidence 55555544333210 0 00 011111111111 222 24456677889999887764
No 384
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=31.14 E-value=1.4e+02 Score=26.62 Aligned_cols=40 Identities=15% Similarity=0.301 Sum_probs=30.9
Q ss_pred hcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEE
Q 024709 20 KNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVA 69 (264)
Q Consensus 20 ~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~a 69 (264)
+|++++++-.|-|+.+-. -+.....+-+.|+++|+|++.+
T Consensus 114 ~~~~~~~~~~DiVi~~~D----------~~~~r~~ln~~~~~~~ip~v~~ 153 (245)
T PRK05690 114 DELAALIAGHDLVLDCTD----------NVATRNQLNRACFAAKKPLVSG 153 (245)
T ss_pred HHHHHHHhcCCEEEecCC----------CHHHHHHHHHHHHHhCCEEEEe
Confidence 567888888888877632 2356678889999999999975
No 385
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=31.06 E-value=45 Score=29.38 Aligned_cols=55 Identities=20% Similarity=0.231 Sum_probs=36.4
Q ss_pred ceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHH
Q 024709 30 DGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVS 91 (264)
Q Consensus 30 Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~ 91 (264)
|-=||.++|+-+-+...-=-.-.-.++..|++.|-|++.-| .+|.-+-|..+|+.
T Consensus 80 dlg~i~~~DvviaiS~SGeT~el~~~~~~aK~~g~~liaiT-------~~~~SsLak~aDvv 134 (202)
T COG0794 80 DLGMITPGDVVIAISGSGETKELLNLAPKAKRLGAKLIAIT-------SNPDSSLAKAADVV 134 (202)
T ss_pred CccCCCCCCEEEEEeCCCcHHHHHHHHHHHHHcCCcEEEEe-------CCCCChHHHhcCeE
Confidence 44455566655555443223344678999999999999844 77877777666554
No 386
>PF01915 Glyco_hydro_3_C: Glycosyl hydrolase family 3 C-terminal domain; InterPro: IPR002772 Glycoside hydrolase family 3 GH3 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-xylosidase (3.2.1.37 from EC); N-acetyl beta-glucosaminidase (3.2.1.52 from EC); glucan beta-1,3-glucosidase (3.2.1.58 from EC); cellodextrinase(3.2.1.74 from EC); exo-1,3-1,4-glucanase (3.2.1 from EC). These enzymes are two-domain globular proteins that are N-glycosylated at three sites []. This domain is often C-terminal to the glycoside hydrolase family 3, N-terminal domain IPR001764 from INTERPRO.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3LK6_D 3NVD_B 3BMX_B 3ABZ_D 3AC0_D 2X40_A 2X41_A 2X42_A 1J8V_A 1IEX_A ....
Probab=31.01 E-value=42 Score=29.18 Aligned_cols=79 Identities=15% Similarity=0.158 Sum_probs=51.1
Q ss_pred CHHHHhcHHHHHhhcceeeecCCCcccCC-----------CCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCC
Q 024709 15 SIDSLKNLNEIILASDGAMVARGDLGAQV-----------PLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPT 83 (264)
Q Consensus 15 ~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~-----------~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~pt 83 (264)
+...+++..+.++.+|.+++.=|.-..|- ..-+++..|+++|+...+.+||+|+- +....|-
T Consensus 72 ~~~~~~~~~~~~~~aD~vIv~~~~~~~e~~~~~~~~~~~~~~~~l~~~q~~li~~v~~~~~~~Ivv-------v~~~~P~ 144 (227)
T PF01915_consen 72 DDEGIDEAVAAAKEADVVIVFVGRPSGEGNDNNTEGESDRSDLALPANQQELIKAVAAAGKKVIVV-------VNSGNPY 144 (227)
T ss_dssp CCSCHHHHHHHHHCSSEEEEEEETTSBCCCSS-EETTGSCSSTBCCCHHHHHHHHHHHHHSCEEEE-------EE-SSGG
T ss_pred cccchHHHHHHhhcCCEEEEeccccccccccccccccCCcccccchhhHHHHHHHHHHhcCCeEEE-------EecCCcc
Confidence 44566677777777999888766333222 22567788999999999999998872 2334553
Q ss_pred hHHHHHHHHHHHhcccccccccc
Q 024709 84 RAEVADVSELVRQQADALMLSGE 106 (264)
Q Consensus 84 rae~~dv~~~v~~g~d~~~ls~e 106 (264)
-. +...+.+|+++....
T Consensus 145 ~l------~~~~~~~~Ail~~~~ 161 (227)
T PF01915_consen 145 DL------DPWEDNVDAILAAYY 161 (227)
T ss_dssp CG------HCCHHC-SEEEEEES
T ss_pred cc------HHHHhhhceEeeccc
Confidence 32 222338888888754
No 387
>PRK10206 putative oxidoreductase; Provisional
Probab=30.98 E-value=1.5e+02 Score=27.68 Aligned_cols=85 Identities=18% Similarity=0.208 Sum_probs=52.9
Q ss_pred HHhcHHHHHhh--cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCC-CCChHHHHHHHHHH
Q 024709 18 SLKNLNEIILA--SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYP-IPTRAEVADVSELV 94 (264)
Q Consensus 18 ~~~n~~eI~~~--~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~-~ptrae~~dv~~~v 94 (264)
...+++++++- .|.|+|+ .|. .....++.+|-++||+|++ +.| ..+.+|..++..+.
T Consensus 52 ~~~~~~ell~~~~iD~V~I~-------tp~----~~H~~~~~~al~aGkhVl~---------EKPla~~~~ea~~l~~~a 111 (344)
T PRK10206 52 FTSDLDEVLNDPDVKLVVVC-------THA----DSHFEYAKRALEAGKNVLV---------EKPFTPTLAEAKELFALA 111 (344)
T ss_pred ccCCHHHHhcCCCCCEEEEe-------CCc----hHHHHHHHHHHHcCCcEEE---------ecCCcCCHHHHHHHHHHH
Confidence 34689999974 8999995 332 2457788889999999998 555 45667776666655
Q ss_pred HhccccccccccccCCCChHHHHHHHHHHHHH
Q 024709 95 RQQADALMLSGESAMGQFPDKALAVLRSVSLR 126 (264)
Q Consensus 95 ~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~ 126 (264)
... ...+.-+. .-.| -.+++.+++++++
T Consensus 112 ~~~-~~~l~v~~--~~R~-~p~~~~~k~li~~ 139 (344)
T PRK10206 112 KSK-GLTVTPYQ--NRRF-DSCFLTAKKAIES 139 (344)
T ss_pred HHh-CCEEEEEE--eeeE-CHHHHHHHHHHHc
Confidence 442 11211111 1122 1366777777765
No 388
>PRK04302 triosephosphate isomerase; Provisional
Probab=30.85 E-value=3.3e+02 Score=23.67 Aligned_cols=89 Identities=21% Similarity=0.302 Sum_probs=52.5
Q ss_pred hcHHHHHhh-cceeeecCC-CcccCCCCC-ChHHHHHHHHHHHHHh--CCCEEEEhhhhhhhhhCCCCChHHHHHHHHHH
Q 024709 20 KNLNEIILA-SDGAMVARG-DLGAQVPLE-QVPSIQEKIVQLCRQL--NKPVIVASQLLESMIEYPIPTRAEVADVSELV 94 (264)
Q Consensus 20 ~n~~eI~~~-~Dgi~i~rg-dL~~~~~~~-~v~~~qk~ii~~~~~~--gkpv~~atq~leSM~~~~~ptrae~~dv~~~v 94 (264)
+++..+.+. .|.|-+.|- -.|...+.. ..+...+++++..++. +.|++... ..-+ -+|+..+.
T Consensus 125 ~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~Gg---------gI~~---~e~~~~~~ 192 (223)
T PRK04302 125 ETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGA---------GIST---GEDVKAAL 192 (223)
T ss_pred HHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEEC---------CCCC---HHHHHHHH
Confidence 444444444 455544443 334333321 3455566777777764 57888632 1212 23456677
Q ss_pred HhccccccccccccCCCChHHHHHHH
Q 024709 95 RQQADALMLSGESAMGQFPDKALAVL 120 (264)
Q Consensus 95 ~~g~d~~~ls~eta~G~yP~eav~~m 120 (264)
..|+|+++..+....-..|.+.++-+
T Consensus 193 ~~gadGvlVGsa~l~~~~~~~~~~~~ 218 (223)
T PRK04302 193 ELGADGVLLASGVVKAKDPEAALRDL 218 (223)
T ss_pred cCCCCEEEEehHHhCCcCHHHHHHHH
Confidence 79999999998877777787666544
No 389
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=30.80 E-value=4.8e+02 Score=24.88 Aligned_cols=127 Identities=13% Similarity=0.173 Sum_probs=70.5
Q ss_pred HHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhh
Q 024709 53 EKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCR 132 (264)
Q Consensus 53 k~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~ 132 (264)
.-+...|+..|.|+.+- .|..+-..-+.+.-..|++.+... |.| -++++...+++++-. ++.
T Consensus 107 ~a~A~~Aa~~G~~~~I~-----------vP~~~~~~k~~~i~~~GAeVi~v~-----~~~-~~a~~~a~~~~~~~g-~~~ 168 (376)
T TIGR01747 107 RGVAWAAQQLGQKAVVY-----------MPKGSAQERVENILNLGAECTITD-----MNY-DDTVRLAMQMAQQHG-WVV 168 (376)
T ss_pred HHHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHhCCCEEEEEC-----CCH-HHHHHHHHHHHHhcC-cEE
Confidence 45677899999999983 333333344566778999877664 334 466666666543311 111
Q ss_pred cccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcC------CcEEEEEcCCchHHHHHhh-----cCCCC-cEEEEcC
Q 024709 133 EGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLK------ASALFVYTKTGQMASLLSR-----SRPDC-PIFAFAP 200 (264)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~------A~aIVv~T~sG~tA~~iSr-----~RP~~-PIiAvT~ 200 (264)
... ..+ +. +...+..+.+--..-+.++.++++ .+.||+.+-+|.++.-+++ ++|.. .|+++-+
T Consensus 169 ~~~---~~~-~~-~~~~~~~ii~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep 243 (376)
T TIGR01747 169 VQD---TAW-EG-YEKIPTWIMQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEP 243 (376)
T ss_pred ecc---ccc-cc-cccCCchHHHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEee
Confidence 000 000 00 001111122233345556777664 5789999999988766654 24555 5888776
Q ss_pred Ch
Q 024709 201 MS 202 (264)
Q Consensus 201 ~~ 202 (264)
..
T Consensus 244 ~g 245 (376)
T TIGR01747 244 DK 245 (376)
T ss_pred CC
Confidence 43
No 390
>PRK08227 autoinducer 2 aldolase; Validated
Probab=30.78 E-value=1.3e+02 Score=27.49 Aligned_cols=67 Identities=15% Similarity=0.260 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHH
Q 024709 50 SIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLR 126 (264)
Q Consensus 50 ~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~ 126 (264)
..-+++++.| ..||++|.- ...+++.-...+..++..|+-++...--.-.=..|...++-++.|+.+
T Consensus 182 ~~f~~vv~a~---~vPVviaGG-------~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~al~~IVh~ 248 (264)
T PRK08227 182 EGFERITAGC---PVPIVIAGG-------KKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKAVHAVVHE 248 (264)
T ss_pred HHHHHHHHcC---CCcEEEeCC-------CCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHHHHHHHhC
Confidence 4566777755 589999862 112334446899999999999999877777778899988888888654
No 391
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=30.73 E-value=1.5e+02 Score=25.87 Aligned_cols=65 Identities=15% Similarity=0.145 Sum_probs=39.6
Q ss_pred CcEEEEEc----CCchHH--HHHhhcCCCCcEEEEcCChhhhhhccccc-ccEEEEecCCCCHHHHHHHHHHHH
Q 024709 170 ASALFVYT----KTGQMA--SLLSRSRPDCPIFAFAPMSSVRRRLNLQW-GLVPFCLNFSDDMESNLNQTFSLL 236 (264)
Q Consensus 170 A~aIVv~T----~sG~tA--~~iSr~RP~~PIiAvT~~~~~aR~L~L~~-GV~P~~~~~~~~~e~~i~~al~~~ 236 (264)
.+.+++-- .+|... ..+.+..|..||+.+|............| |+..++.+. .+.++++ .+++..
T Consensus 53 ~DvvllDi~~p~~~G~~~~~~~i~~~~p~~~vvvlt~~~~~~~~~~~~~~Ga~G~l~K~-~~~~~L~-~aI~~v 124 (216)
T PRK10100 53 GSIILLDMMEADKKLIHYWQDTLSRKNNNIKILLLNTPEDYPYREIENWPHINGVFYAM-EDQERVV-NGLQGV 124 (216)
T ss_pred CCEEEEECCCCCccHHHHHHHHHHHhCCCCcEEEEECCchhHHHHHHHhcCCeEEEECC-CCHHHHH-HHHHHH
Confidence 46444433 355543 34667789999999998877555433433 888887763 4555543 344433
No 392
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=30.67 E-value=54 Score=28.14 Aligned_cols=33 Identities=9% Similarity=0.338 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCchHHHHH-----hhcCCCCcEEEEcCCh
Q 024709 169 KASALFVYTKTGQMASLL-----SRSRPDCPIFAFAPMS 202 (264)
Q Consensus 169 ~A~aIVv~T~sG~tA~~i-----Sr~RP~~PIiAvT~~~ 202 (264)
+-+.+|++|.||.|...+ +|-| .+|++++|.+.
T Consensus 111 ~~Dv~I~iS~SG~t~~~i~~~~~ak~~-g~~iI~iT~~~ 148 (192)
T PRK00414 111 EGDVLLGISTSGNSGNIIKAIEAARAK-GMKVITLTGKD 148 (192)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence 347899999999976644 4444 79999999863
No 393
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=30.63 E-value=91 Score=24.16 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=33.1
Q ss_pred HHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEE
Q 024709 18 SLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIV 68 (264)
Q Consensus 18 ~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~ 68 (264)
++.++++.+.-.|.|+++ +.+....+++-+.|...|+||.+
T Consensus 37 ~~~e~~~~~~~~Dvill~----------PQv~~~~~~i~~~~~~~~ipv~~ 77 (99)
T cd05565 37 AYGSHYDMIPDYDLVILA----------PQMASYYDELKKDTDRLGIKLVT 77 (99)
T ss_pred eHHHHHHhccCCCEEEEc----------ChHHHHHHHHHHHhhhcCCCEEE
Confidence 344555666667888887 78888899999999999999987
No 394
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=30.38 E-value=4.5e+02 Score=24.47 Aligned_cols=41 Identities=17% Similarity=0.261 Sum_probs=34.7
Q ss_pred HHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHh
Q 024709 88 ADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEK 129 (264)
Q Consensus 88 ~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~ 129 (264)
.+.-+++..|+|.+--++|-..| +-+|||+-|+.+-.+...
T Consensus 125 ~EAlrai~~GadmI~Tt~e~gTg-~v~~av~hlr~~~~~~~~ 165 (287)
T TIGR00343 125 GEALRRINEGAAMIRTKGEAGTG-NIVEAVRHMRKINEEIRQ 165 (287)
T ss_pred HHHHHHHHCCCCEEeccccCCCc-cHHHHHHHHHHHHHHHHH
Confidence 34567899999999999998888 679999999998877765
No 395
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=30.15 E-value=57 Score=27.99 Aligned_cols=44 Identities=16% Similarity=0.329 Sum_probs=32.4
Q ss_pred HHHHhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEE
Q 024709 16 IDSLKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVA 69 (264)
Q Consensus 16 ~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~a 69 (264)
.+=++.++..++. .|||++.+.|- +. ....+++|.+.|.||+.-
T Consensus 42 ~~q~~~i~~~i~~~~d~Iiv~~~~~------~~----~~~~l~~~~~~gIpvv~~ 86 (257)
T PF13407_consen 42 EEQIEQIEQAISQGVDGIIVSPVDP------DS----LAPFLEKAKAAGIPVVTV 86 (257)
T ss_dssp HHHHHHHHHHHHTTESEEEEESSST------TT----THHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHhcCCEEEecCCCH------HH----HHHHHHHHhhcCceEEEE
Confidence 3445677777777 99999986664 12 236778899999999984
No 396
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=30.09 E-value=2.9e+02 Score=22.06 Aligned_cols=48 Identities=25% Similarity=0.272 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCCcE-EEEEcCCch--HHHHHh--------hcCCCCcEEEEcCCh
Q 024709 155 GEICNGAAKIANKLKASA-LFVYTKTGQ--MASLLS--------RSRPDCPIFAFAPMS 202 (264)
Q Consensus 155 ~aIA~aAv~lA~~l~A~a-IVv~T~sG~--tA~~iS--------r~RP~~PIiAvT~~~ 202 (264)
+.|..++-.+++.+.... |+++-..|+ .|..++ ..||..|.+++..+.
T Consensus 19 ~~i~~aa~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 77 (138)
T PF13580_consen 19 EAIEKAADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNRILLPAIALNDDA 77 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTSSS-SEEETTSTH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCcccccccccccch
Confidence 667788888888876654 555554443 233222 346667888877766
No 397
>PRK06801 hypothetical protein; Provisional
Probab=30.08 E-value=3e+02 Score=25.41 Aligned_cols=79 Identities=14% Similarity=0.206 Sum_probs=50.7
Q ss_pred eeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCC
Q 024709 32 AMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQ 111 (264)
Q Consensus 32 i~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~ 111 (264)
|.+++|.+. ...+..+-..+...++++..||.+= ..+.. ....+..|+..|++.||+-+- .
T Consensus 47 l~~~~~~~~----~~~~~~~~~~~~~~a~~~~vpV~lH-------lDH~~----~~e~i~~Ai~~GftSVm~D~S----~ 107 (286)
T PRK06801 47 INIAEVHFK----YISLESLVEAVKFEAARHDIPVVLN-------LDHGL----HFEAVVRALRLGFSSVMFDGS----T 107 (286)
T ss_pred EEeCcchhh----cCCHHHHHHHHHHHHHHCCCCEEEE-------CCCCC----CHHHHHHHHHhCCcEEEEcCC----C
Confidence 345555542 2345666777777888999999981 11211 245678999999999999542 2
Q ss_pred Ch-HHHHHHHHHHHHHHHh
Q 024709 112 FP-DKALAVLRSVSLRIEK 129 (264)
Q Consensus 112 yP-~eav~~m~~i~~~~E~ 129 (264)
+| .|-++.-+++...+..
T Consensus 108 l~~eeNi~~t~~v~~~a~~ 126 (286)
T PRK06801 108 LEYEENVRQTREVVKMCHA 126 (286)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 45 5666666666665544
No 398
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=30.08 E-value=2.1e+02 Score=25.81 Aligned_cols=72 Identities=10% Similarity=0.196 Sum_probs=50.8
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHh-ccccccccccccCCCChHHHHHHHHHHH
Q 024709 46 EQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQ-QADALMLSGESAMGQFPDKALAVLRSVS 124 (264)
Q Consensus 46 ~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~-g~d~~~ls~eta~G~yP~eav~~m~~i~ 124 (264)
++.....+++++.++.+|..|.+.-. ++. +-+..++.+.+..+.+ |+|.+.|. +|.=..+|.+.-++++.+-
T Consensus 108 ~e~~~~~~~~i~~a~~~G~~v~~~~e--da~----r~~~~~l~~~~~~~~~~g~~~i~l~-Dt~G~~~P~~v~~~~~~~~ 180 (262)
T cd07948 108 TEIIESAVEVIEFVKSKGIEVRFSSE--DSF----RSDLVDLLRVYRAVDKLGVNRVGIA-DTVGIATPRQVYELVRTLR 180 (262)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEEE--eeC----CCCHHHHHHHHHHHHHcCCCEEEEC-CcCCCCCHHHHHHHHHHHH
Confidence 56777788899999999988877431 111 1124445566655444 99999887 8888999998777777663
No 399
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=30.02 E-value=89 Score=23.18 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhCCCEEE
Q 024709 50 SIQEKIVQLCRQLNKPVIV 68 (264)
Q Consensus 50 ~~qk~ii~~~~~~gkpv~~ 68 (264)
...+.+...|+.++.|++.
T Consensus 40 ~~~~~i~~~c~~~~Vp~~~ 58 (82)
T PRK13602 40 RLTEKVEALANEKGVPVSK 58 (82)
T ss_pred HHHHHHHHHHHHcCCCEEE
Confidence 5788999999999999997
No 400
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=30.00 E-value=79 Score=30.74 Aligned_cols=48 Identities=17% Similarity=0.171 Sum_probs=33.9
Q ss_pred HHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhh
Q 024709 22 LNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLES 75 (264)
Q Consensus 22 ~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leS 75 (264)
++..++. .+||.+. -+|.-.+|......++++.+.|+||+++||-+.-
T Consensus 292 l~~~~~~g~~GiVle------g~G~G~vp~~~~~~l~~a~~~GipVV~tSqc~~G 340 (404)
T TIGR02153 292 IEFLVDKGYKGIVIE------GTGLGHVSEDWIPSIKRATDDGVPVVMTSQCLYG 340 (404)
T ss_pred HHHHHhCCCCEEEEe------eECCCCCCHHHHHHHHHHHHCCCEEEEeCCCCCC
Confidence 4444444 7899986 3444455555667777888899999999998753
No 401
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=29.88 E-value=1.1e+02 Score=28.81 Aligned_cols=61 Identities=8% Similarity=0.064 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhc--cccccccccccCCC--ChHHHHHHHH
Q 024709 49 PSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQ--ADALMLSGESAMGQ--FPDKALAVLR 121 (264)
Q Consensus 49 ~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g--~d~~~ls~eta~G~--yP~eav~~m~ 121 (264)
++.|...+++++..+.+++++. .-+..+..-+..-+..| +|.+.+ ++|.|. +=++.+++++
T Consensus 68 ~E~~~sfvrk~k~~~L~v~~Sv----------G~t~e~~~r~~~lv~a~~~~d~i~~--D~ahg~s~~~~~~i~~i~ 132 (321)
T TIGR01306 68 EESRIPFIKDMQERGLFASISV----------GVKACEYEFVTQLAEEALTPEYITI--DIAHGHSNSVINMIKHIK 132 (321)
T ss_pred HHHHHHHHHhccccccEEEEEc----------CCCHHHHHHHHHHHhcCCCCCEEEE--eCccCchHHHHHHHHHHH
Confidence 4455556888888888888753 33444455566677778 688777 788884 3344444443
No 402
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=29.86 E-value=66 Score=29.86 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=36.3
Q ss_pred cHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhh
Q 024709 21 NLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMI 77 (264)
Q Consensus 21 n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~ 77 (264)
-++..++-.||+++.- +|.-.++......++++.+.|+||+++||-.+-.+
T Consensus 217 ~l~~~~~~~~GlVl~~------~G~Gn~~~~~~~~l~~a~~~gipVV~~sr~~~G~v 267 (313)
T PF00710_consen 217 LLDAALAGAKGLVLEG------YGAGNVPPALLEALARAVERGIPVVVTSRCPSGGV 267 (313)
T ss_dssp HHHHHHTT-SEEEEEE------BTTTBSSHHHHHHHHHHHHTTSEEEEEESSSCS-B
T ss_pred HHHHHhccCCEEEEec------cCCCCCCHHHHHHHHHHHhcCceEEEecccccCCc
Confidence 3555664489999863 33333777788888999999999999998775443
No 403
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=29.77 E-value=2.4e+02 Score=25.61 Aligned_cols=87 Identities=20% Similarity=0.376 Sum_probs=51.0
Q ss_pred cceEEEec--cCHHHHhcHHHHHhh---cceeee-------cCCCcccCCCCCChHHHHHHHHHHHHHh-CCCEEEEhhh
Q 024709 6 NIAVIAKI--ESIDSLKNLNEIILA---SDGAMV-------ARGDLGAQVPLEQVPSIQEKIVQLCRQL-NKPVIVASQL 72 (264)
Q Consensus 6 ~~~iiakI--E~~~~~~n~~eI~~~---~Dgi~i-------~rgdL~~~~~~~~v~~~qk~ii~~~~~~-gkpv~~atq~ 72 (264)
+..+++.| .+.+.....-+.++. .|+|=+ ..| |..+. .-+..-.++++..++. .+|+++=
T Consensus 91 ~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~g--g~~~~--~~~~~~~eiv~~vr~~~~~pv~vK--- 163 (301)
T PRK07259 91 DTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHG--GMAFG--TDPELAYEVVKAVKEVVKVPVIVK--- 163 (301)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCC--ccccc--cCHHHHHHHHHHHHHhcCCCEEEE---
Confidence 45677777 345555444333333 588855 222 22222 2245667777777776 7999972
Q ss_pred hhhhhhCCCCChHHHHHHHH-HHHhcccccccccc
Q 024709 73 LESMIEYPIPTRAEVADVSE-LVRQQADALMLSGE 106 (264)
Q Consensus 73 leSM~~~~~ptrae~~dv~~-~v~~g~d~~~ls~e 106 (264)
..|+-.+..+++. +...|+|++.+++=
T Consensus 164 -------l~~~~~~~~~~a~~l~~~G~d~i~~~nt 191 (301)
T PRK07259 164 -------LTPNVTDIVEIAKAAEEAGADGLSLINT 191 (301)
T ss_pred -------cCCCchhHHHHHHHHHHcCCCEEEEEcc
Confidence 2345556666665 45679999988643
No 404
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=29.71 E-value=45 Score=28.87 Aligned_cols=31 Identities=19% Similarity=0.150 Sum_probs=26.2
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEhhhhhhh
Q 024709 46 EQVPSIQEKIVQLCRQLNKPVIVASQLLESM 76 (264)
Q Consensus 46 ~~v~~~qk~ii~~~~~~gkpv~~atq~leSM 76 (264)
+++-.+|..+++.|+++|.|+|-.+.+=+|.
T Consensus 158 ~~ir~i~~~l~~~a~~~~i~~i~~~~~~~~~ 188 (197)
T PRK12339 158 PEYRTIMDYSIADARGYNIKVIDTDNYREAR 188 (197)
T ss_pred HHHHHHHHHHHHHHHHcCCCeecCccHHHHH
Confidence 5778899999999999999999877665554
No 405
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=29.68 E-value=81 Score=31.03 Aligned_cols=73 Identities=21% Similarity=0.267 Sum_probs=48.4
Q ss_pred cHHHHHhh-cceeeecCCCcccCCCCCC--h----HHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHH
Q 024709 21 NLNEIILA-SDGAMVARGDLGAQVPLEQ--V----PSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSEL 93 (264)
Q Consensus 21 n~~eI~~~-~Dgi~i~rgdL~~~~~~~~--v----~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~ 93 (264)
.-++++.. +||+=||=|-=++=+-.+. + ..+--++.+.+++.|.|||- .---.-+-+++.|
T Consensus 305 qa~nLI~aGaDgLrVGMGsGSiCiTqevma~GrpQ~TAVy~va~~A~q~gvpviA------------DGGiq~~Ghi~KA 372 (503)
T KOG2550|consen 305 QAANLIAAGADGLRVGMGSGSICITQKVMACGRPQGTAVYKVAEFANQFGVPCIA------------DGGIQNVGHVVKA 372 (503)
T ss_pred HHHHHHHccCceeEeccccCceeeeceeeeccCCcccchhhHHHHHHhcCCceee------------cCCcCccchhHhh
Confidence 34555666 9999988665443332210 0 12334678889999999995 3333345688999
Q ss_pred HHhccccccccc
Q 024709 94 VRQQADALMLSG 105 (264)
Q Consensus 94 v~~g~d~~~ls~ 105 (264)
+..|++.||+.+
T Consensus 373 l~lGAstVMmG~ 384 (503)
T KOG2550|consen 373 LGLGASTVMMGG 384 (503)
T ss_pred hhcCchhheecc
Confidence 999999999853
No 406
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=29.63 E-value=1.2e+02 Score=26.88 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=35.0
Q ss_pred HHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhh
Q 024709 18 SLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLL 73 (264)
Q Consensus 18 ~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~l 73 (264)
..+.+.++++-+|.+.++.|-|. +........+.+.|+++|+|+++=.+++
T Consensus 39 ~~e~~~~~l~~~d~vvi~~G~l~-----~~~~~~i~~~~~~~~~~~~pvVlDp~~~ 89 (242)
T cd01170 39 APEEVEELAKIAGALVINIGTLT-----SEQIEAMLKAGKAANQLGKPVVLDPVGV 89 (242)
T ss_pred CHHHHHHHHHHcCcEEEeCCCCC-----hHHHHHHHHHHHHHHhcCCCEEEccccc
Confidence 35667777888999999776552 2334444555667899999999844433
No 407
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=29.59 E-value=5e+02 Score=24.70 Aligned_cols=74 Identities=9% Similarity=0.025 Sum_probs=54.5
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHH-HHhccccccccccccCCCChHHHHHHHHHHH
Q 024709 46 EQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSEL-VRQQADALMLSGESAMGQFPDKALAVLRSVS 124 (264)
Q Consensus 46 ~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~-v~~g~d~~~ls~eta~G~yP~eav~~m~~i~ 124 (264)
++.....++.++.++..|..|.+.. ....+-+...+.+++.. ...|+|.+.|. +|.=...|.+.-+.++.+.
T Consensus 112 ~~~l~~~~~~v~~a~~~G~~v~~~~------ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~-DT~G~~~P~~v~~lv~~l~ 184 (378)
T PRK11858 112 EEVLERMVEAVEYAKDHGLYVSFSA------EDASRTDLDFLIEFAKAAEEAGADRVRFC-DTVGILDPFTMYELVKELV 184 (378)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEe------ccCCCCCHHHHHHHHHHHHhCCCCEEEEe-ccCCCCCHHHHHHHHHHHH
Confidence 5556667889999999999888742 13334455556665554 45699999998 8998999999888888776
Q ss_pred HH
Q 024709 125 LR 126 (264)
Q Consensus 125 ~~ 126 (264)
+.
T Consensus 185 ~~ 186 (378)
T PRK11858 185 EA 186 (378)
T ss_pred Hh
Confidence 54
No 408
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=29.54 E-value=2.3e+02 Score=25.00 Aligned_cols=93 Identities=12% Similarity=0.109 Sum_probs=52.1
Q ss_pred HHHhcHHHHH--hhcceeeecCCCcccCCCCCChH---HHHHHHHHHHHHhC-CCEEEEhhhhhhhhhCCCCChHHHHHH
Q 024709 17 DSLKNLNEII--LASDGAMVARGDLGAQVPLEQVP---SIQEKIVQLCRQLN-KPVIVASQLLESMIEYPIPTRAEVADV 90 (264)
Q Consensus 17 ~~~~n~~eI~--~~~Dgi~i~rgdL~~~~~~~~v~---~~qk~ii~~~~~~g-kpv~~atq~leSM~~~~~ptrae~~dv 90 (264)
..++.+.+++ ...|.|++ ++++-|..... ..-.++-+..+..+ ..+.++.. -++. .+
T Consensus 125 t~~e~l~~~l~~~~vD~Vl~----m~v~pG~~gq~~~~~~~~ki~~~~~~~~~~~I~VdGG--------I~~~-----ti 187 (228)
T PTZ00170 125 TPVEVLFPLIDTDLVDMVLV----MTVEPGFGGQSFMHDMMPKVRELRKRYPHLNIQVDGG--------INLE-----TI 187 (228)
T ss_pred CCHHHHHHHHccchhhhHHh----hhcccCCCCcEecHHHHHHHHHHHHhcccCeEEECCC--------CCHH-----HH
Confidence 3677888888 66888875 66665542211 11122222111111 22322111 1222 34
Q ss_pred HHHHHhccccccccccccCCCChHHHHHHHHHHHHH
Q 024709 91 SELVRQQADALMLSGESAMGQFPDKALAVLRSVSLR 126 (264)
Q Consensus 91 ~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~ 126 (264)
..++..|+|.+.+.+--.....|.++++.+++...+
T Consensus 188 ~~~~~aGad~iVvGsaI~~a~d~~~~~~~i~~~~~~ 223 (228)
T PTZ00170 188 DIAADAGANVIVAGSSIFKAKDRKQAIELLRESVQK 223 (228)
T ss_pred HHHHHcCCCEEEEchHHhCCCCHHHHHHHHHHHHHH
Confidence 577888999998876554456799999888776543
No 409
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=29.45 E-value=2.2e+02 Score=20.57 Aligned_cols=63 Identities=13% Similarity=0.164 Sum_probs=40.3
Q ss_pred HHHHHHHhcCCcEEEEEc--CCch---HHHHHhhcCCCCcEEEEcCChhh-hhhcccccccEEEEecCC
Q 024709 160 GAAKIANKLKASALFVYT--KTGQ---MASLLSRSRPDCPIFAFAPMSSV-RRRLNLQWGLVPFCLNFS 222 (264)
Q Consensus 160 aAv~lA~~l~A~aIVv~T--~sG~---tA~~iSr~RP~~PIiAvT~~~~~-aR~L~L~~GV~P~~~~~~ 222 (264)
.+.....+.+.+.|++-- ..+. .++.+.+..|..|++++|++... ...-.+..|+.-++..+.
T Consensus 34 ~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~ 102 (112)
T PF00072_consen 34 EALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYLSKPF 102 (112)
T ss_dssp HHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEEESSS
T ss_pred HHHHHhcccCceEEEEEeeeccccccccccccccccccccEEEecCCCCHHHHHHHHHCCCCEEEECCC
Confidence 334455666788666552 2222 45667677799999999976553 222346888888877654
No 410
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=29.37 E-value=1.8e+02 Score=25.43 Aligned_cols=58 Identities=26% Similarity=0.377 Sum_probs=40.3
Q ss_pred HHhCCCEEEEhhhhhhhhhCCCC-----ChHHH----HHHHHHHHhccccccccccccCCCChHHHHHHHHHHHH
Q 024709 60 RQLNKPVIVASQLLESMIEYPIP-----TRAEV----ADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSL 125 (264)
Q Consensus 60 ~~~gkpv~~atq~leSM~~~~~p-----trae~----~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~ 125 (264)
+..+.|+.+ |+. |+. +..|+ .|+..+...|+|++.+..=|..|..-.++.+.+.+.+.
T Consensus 47 ~~~~ipv~v-------MIR-pr~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~ 113 (201)
T PF03932_consen 47 EAVDIPVHV-------MIR-PRGGDFVYSDEEIEIMKEDIRMLRELGADGFVFGALTEDGEIDEEALEELIEAAG 113 (201)
T ss_dssp HHTTSEEEE-------E---SSSS-S---HHHHHHHHHHHHHHHHTT-SEEEE--BETTSSB-HHHHHHHHHHHT
T ss_pred hhcCCceEE-------EEC-CCCCCccCCHHHHHHHHHHHHHHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcC
Confidence 378999998 654 544 34443 79999999999999999999999988887777666543
No 411
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=29.37 E-value=2.5e+02 Score=25.10 Aligned_cols=73 Identities=11% Similarity=0.097 Sum_probs=51.1
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHH-HHHhccccccccccccCCCChHHHHHHHHHHH
Q 024709 46 EQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSE-LVRQQADALMLSGESAMGQFPDKALAVLRSVS 124 (264)
Q Consensus 46 ~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~-~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~ 124 (264)
++.....+..++.++++|..+.+.. ...++-+...+.+++. +...|+|.+.|. +|.=..+|.+.-+.++.+-
T Consensus 110 ~~~~~~~~~~i~~a~~~G~~v~~~~------~~~~~~~~~~~~~~~~~~~~~G~~~i~l~-DT~G~~~P~~v~~lv~~l~ 182 (268)
T cd07940 110 EEVLERAVEAVEYAKSHGLDVEFSA------EDATRTDLDFLIEVVEAAIEAGATTINIP-DTVGYLTPEEFGELIKKLK 182 (268)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEee------ecCCCCCHHHHHHHHHHHHHcCCCEEEEC-CCCCCCCHHHHHHHHHHHH
Confidence 3445566788999999998777521 1223445555555555 455699999998 8888899998888877764
Q ss_pred H
Q 024709 125 L 125 (264)
Q Consensus 125 ~ 125 (264)
+
T Consensus 183 ~ 183 (268)
T cd07940 183 E 183 (268)
T ss_pred H
Confidence 3
No 412
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=29.30 E-value=1.3e+02 Score=22.61 Aligned_cols=52 Identities=25% Similarity=0.149 Sum_probs=36.3
Q ss_pred HHhcCCcEEEEEcCCchH----HHHHhhcCCCCcEEEEcCChhhhhhcccccccEEE
Q 024709 165 ANKLKASALFVYTKTGQM----ASLLSRSRPDCPIFAFAPMSSVRRRLNLQWGLVPF 217 (264)
Q Consensus 165 A~~l~A~aIVv~T~sG~t----A~~iSr~RP~~PIiAvT~~~~~aR~L~L~~GV~P~ 217 (264)
+.--+|+++++.|.+-.. +..+.++.|..+|++...+....+.|.- .|+--+
T Consensus 58 a~i~~a~~vv~~~~~d~~n~~~~~~~r~~~~~~~ii~~~~~~~~~~~l~~-~g~d~v 113 (116)
T PF02254_consen 58 AGIEKADAVVILTDDDEENLLIALLARELNPDIRIIARVNDPENAELLRQ-AGADHV 113 (116)
T ss_dssp TTGGCESEEEEESSSHHHHHHHHHHHHHHTTTSEEEEEESSHHHHHHHHH-TT-SEE
T ss_pred cCccccCEEEEccCCHHHHHHHHHHHHHHCCCCeEEEEECCHHHHHHHHH-CCcCEE
Confidence 333478899999866543 3444557899999999999988877744 555443
No 413
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=29.29 E-value=35 Score=27.69 Aligned_cols=44 Identities=34% Similarity=0.466 Sum_probs=29.5
Q ss_pred EEEeccCHHH--HhcH--HHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHh-CCCEEE
Q 024709 9 VIAKIESIDS--LKNL--NEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQL-NKPVIV 68 (264)
Q Consensus 9 iiakIE~~~~--~~n~--~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~-gkpv~~ 68 (264)
+=-|+||+-+ ++|- ++=++.+|+|+++ -|-.++.. +.. |||++=
T Consensus 33 ~~IKVETqGs~G~eN~LT~edI~~Ad~VI~A-aD~~i~~~---------------~ff~gk~vi~ 81 (122)
T COG1445 33 VEIKVETQGAVGIENRLTAEDIAAADVVILA-ADIEVDLS---------------RFFAGKPVIE 81 (122)
T ss_pred CeEEEEcCCcccccCcCCHHHHHhCCEEEEE-ecccccHh---------------HhhcCCeEEE
Confidence 4468899865 4664 5555669999998 45544433 455 999984
No 414
>PLN02979 glycolate oxidase
Probab=29.27 E-value=2.2e+02 Score=27.43 Aligned_cols=83 Identities=16% Similarity=0.226 Sum_probs=44.0
Q ss_pred cceEEEeccCHHHHhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHH--hCCCEEEEhhhhhhhhhCCCC
Q 024709 6 NIAVIAKIESIDSLKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQ--LNKPVIVASQLLESMIEYPIP 82 (264)
Q Consensus 6 ~~~iiakIE~~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~--~gkpv~~atq~leSM~~~~~p 82 (264)
+..||.|-= ...+......+. +|||.|+-.. |-.+ ...+....-+.+..+. ...|+++..-+=
T Consensus 223 ~~PvivKgV--~~~~dA~~a~~~Gvd~I~VsnhG-Grql--d~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr--------- 288 (366)
T PLN02979 223 KLPILVKGV--LTGEDARIAIQAGAAGIIVSNHG-ARQL--DYVPATISALEEVVKATQGRIPVFLDGGVR--------- 288 (366)
T ss_pred CCCEEeecC--CCHHHHHHHHhcCCCEEEECCCC-cCCC--CCchhHHHHHHHHHHHhCCCCeEEEeCCcC---------
Confidence 456666621 112333333344 8999996432 1111 2223223333222222 237888743221
Q ss_pred ChHHHHHHHHHHHhccccccccc
Q 024709 83 TRAEVADVSELVRQQADALMLSG 105 (264)
Q Consensus 83 trae~~dv~~~v~~g~d~~~ls~ 105 (264)
.-.|++.|+..|+|+++++.
T Consensus 289 ---~G~Di~KALALGAdaV~iGr 308 (366)
T PLN02979 289 ---RGTDVFKALALGASGIFIGR 308 (366)
T ss_pred ---cHHHHHHHHHcCCCEEEEcH
Confidence 34799999999999999864
No 415
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=29.25 E-value=95 Score=27.80 Aligned_cols=73 Identities=12% Similarity=0.252 Sum_probs=45.5
Q ss_pred HhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhcc
Q 024709 19 LKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQA 98 (264)
Q Consensus 19 ~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~ 98 (264)
.++++++++-.|.++. +. -|..-..++..|.++|||+++.| ..-+.+|...+..+ ..++
T Consensus 51 ~~dl~~ll~~~DvVid--------~t---~p~~~~~~~~~al~~G~~vvigt---------tG~s~~~~~~l~~a-a~~~ 109 (257)
T PRK00048 51 TDDLEAVLADADVLID--------FT---TPEATLENLEFALEHGKPLVIGT---------TGFTEEQLAELEEA-AKKI 109 (257)
T ss_pred cCCHHHhccCCCEEEE--------CC---CHHHHHHHHHHHHHcCCCEEEEC---------CCCCHHHHHHHHHH-hcCC
Confidence 3677777765676653 22 34445889999999999999865 12234455555553 3555
Q ss_pred ccccccccccCCCCh
Q 024709 99 DALMLSGESAMGQFP 113 (264)
Q Consensus 99 d~~~ls~eta~G~yP 113 (264)
- ++++.-.+.|-.+
T Consensus 110 ~-v~~s~n~s~g~~~ 123 (257)
T PRK00048 110 P-VVIAPNFSIGVNL 123 (257)
T ss_pred C-EEEECcchHHHHH
Confidence 3 6666665555543
No 416
>PLN02826 dihydroorotate dehydrogenase
Probab=29.24 E-value=2.8e+02 Score=27.01 Aligned_cols=37 Identities=19% Similarity=0.373 Sum_probs=28.2
Q ss_pred CCCEEEEhhhhhhhhhCCCCChHHHHHHHH-HHHhccccccccccc
Q 024709 63 NKPVIVASQLLESMIEYPIPTRAEVADVSE-LVRQQADALMLSGES 107 (264)
Q Consensus 63 gkpv~~atq~leSM~~~~~ptrae~~dv~~-~v~~g~d~~~ls~et 107 (264)
.+|+++ ...|.-+..++.+++. +...|+|++.+++-|
T Consensus 262 ~~Pv~v--------KlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt 299 (409)
T PLN02826 262 PPPLLV--------KIAPDLSKEDLEDIAAVALALGIDGLIISNTT 299 (409)
T ss_pred CCceEE--------ecCCCCCHHHHHHHHHHHHHcCCCEEEEEccc
Confidence 589997 2345556557888887 778899999999765
No 417
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=29.21 E-value=2.4e+02 Score=25.43 Aligned_cols=75 Identities=15% Similarity=0.196 Sum_probs=49.5
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEE-hhhhhhhhhCCCCChHHHHHHHH-HHHhccccccccccccCCCChHHHHHHHHHH
Q 024709 46 EQVPSIQEKIVQLCRQLNKPVIVA-SQLLESMIEYPIPTRAEVADVSE-LVRQQADALMLSGESAMGQFPDKALAVLRSV 123 (264)
Q Consensus 46 ~~v~~~qk~ii~~~~~~gkpv~~a-tq~leSM~~~~~ptrae~~dv~~-~v~~g~d~~~ls~eta~G~yP~eav~~m~~i 123 (264)
++.....++.++.++++|..|.+. +.+.+ ..+-+...+-+++. +...|+|.+.|. +|.=...|.+.-+..+.+
T Consensus 115 ~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d----~~~~~~~~~~~~~~~~~~~g~~~i~l~-DT~G~~~P~~v~~lv~~l 189 (273)
T cd07941 115 EENLAMIRDSVAYLKSHGREVIFDAEHFFD----GYKANPEYALATLKAAAEAGADWLVLC-DTNGGTLPHEIAEIVKEV 189 (273)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEeEEeccc----cCCCCHHHHHHHHHHHHhCCCCEEEEe-cCCCCCCHHHHHHHHHHH
Confidence 456666789999999999988763 11111 11223333444444 345699998886 888899998877776665
Q ss_pred HH
Q 024709 124 SL 125 (264)
Q Consensus 124 ~~ 125 (264)
.+
T Consensus 190 ~~ 191 (273)
T cd07941 190 RE 191 (273)
T ss_pred HH
Confidence 43
No 418
>PRK06920 dnaE DNA polymerase III DnaE; Reviewed
Probab=29.21 E-value=1.7e+02 Score=32.23 Aligned_cols=44 Identities=25% Similarity=0.330 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhcc
Q 024709 50 SIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQA 98 (264)
Q Consensus 50 ~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~ 98 (264)
...+.+++.+++.|+|++ ||+= ++...|..++..|+-.++..|.
T Consensus 171 ~~~~~l~~la~~~~iplV-atnd----vhyl~~eD~~~~~vl~~I~~g~ 214 (1107)
T PRK06920 171 LLQEKLPEFSNRVNIPVV-ATND----VRYINQSDALVHECLLSVESGT 214 (1107)
T ss_pred HHHHHHHHHHHHhCCCEE-EeCC----ccccCHhHHHHHHHHHHHHcCC
Confidence 345678999999999995 5642 2456889999999999998774
No 419
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=29.16 E-value=55 Score=30.64 Aligned_cols=100 Identities=14% Similarity=0.293 Sum_probs=62.7
Q ss_pred CCcceEEEeccCH--------HHHhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhh
Q 024709 4 LVNIAVIAKIESI--------DSLKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLE 74 (264)
Q Consensus 4 ~~~~~iiakIE~~--------~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~le 74 (264)
++.+.|+.+-|.. +-.+.++.+++. .-++++++|- +.| +.+++.|+++++|++.. .+..
T Consensus 49 ~~RIqi~G~~E~~yl~~l~~e~~~~~~~~~~~~~~P~iIvt~~~---~~p--------~~l~~~a~~~~ip~l~t-~~~~ 116 (304)
T TIGR00679 49 IGRVQLLGKREFGFLSQLPEEEQKQIIHNLLTLNPPAIILSKSF---TDP--------TVLLQVNETYQVPILKT-DLFS 116 (304)
T ss_pred CCeEEEEcHHHHHHHHhCCHHHHHHHHHHHhCCCCCEEEEECcC---CCC--------HHHHHHHHHhCCcEEEe-CCcH
Confidence 4566777766642 345667788877 8899999862 333 67899999999999963 2221
Q ss_pred h-----hhh------CCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHH
Q 024709 75 S-----MIE------YPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLR 121 (264)
Q Consensus 75 S-----M~~------~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~ 121 (264)
| +.. .+..+.- +.++.-|--+|++.|++..||-- -|.+.+.
T Consensus 117 ~~~~~~l~~~L~~~la~~~~~h-----g~~v~i~g~gvli~G~sg~GKS~-lal~Li~ 168 (304)
T TIGR00679 117 TELSFRLETYLNEQFAPTAAIH-----GVLVEVYGVGVLITGKSGVGKSE-TALELIN 168 (304)
T ss_pred HHHHHHHHHHHHHhhccceeee-----eEEEEECCEEEEEEcCCCCCHHH-HHHHHHH
Confidence 1 111 1111111 23555566789999999999953 2444443
No 420
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=29.15 E-value=2.3e+02 Score=24.68 Aligned_cols=120 Identities=21% Similarity=0.181 Sum_probs=63.1
Q ss_pred cCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHH
Q 024709 41 AQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVL 120 (264)
Q Consensus 41 ~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m 120 (264)
++++.+-+-..=.++++..++.|+|++.= +-..-.|.-.. .-+..+...|+|++.+.+ ..| -.+|
T Consensus 27 iKvg~~l~~~~g~~~i~~l~~~~~~i~~D------lK~~DIg~tv~-~~~~~~~~~gad~~Tvh~--~~G------~~~l 91 (216)
T cd04725 27 VKVGLELFEAAGPEIVKELRELGFLVFLD------LKLGDIPNTVA-AAAEALLGLGADAVTVHP--YGG------SDML 91 (216)
T ss_pred EEECHHHHHhcCHHHHHHHHHCCCcEEEE------eecCchHHHHH-HHHHHHHhcCCCEEEECC--cCC------HHHH
Confidence 46665444444468899999999998861 11112221110 001113445999988873 233 3556
Q ss_pred HHHHHHHHhhhhcccccccCCCCCCCCCC-------CCCchHHHHHHHHHHHHhcCCcEEEEEcCCc
Q 024709 121 RSVSLRIEKWCREGKQHATFEPPPISSSV-------SAGIPGEICNGAAKIANKLKASALFVYTKTG 180 (264)
Q Consensus 121 ~~i~~~~E~~~~~~~~~~~~~~~~~~~~~-------~~~~~~aIA~aAv~lA~~l~A~aIVv~T~sG 180 (264)
...++.+++.- . ..+..-.+..+. .....+.........|.+.+...+|+-.+.-
T Consensus 92 ~~~~~~~~~~~--~---~~~~v~~lss~~~~~~q~~~~~~~~~~~~~~~~~a~~~g~~G~V~~~~~~ 153 (216)
T cd04725 92 KAALEAAEEKG--K---GLFAVTVLSSPGALDLQEGIPGSLEDLVERLAKLAREAGVDGVVCGATEP 153 (216)
T ss_pred HHHHHHHhccC--C---eEEEEEcCCCCCHHHHHhhhcCCHHHHHHHHHHHHHHHCCCEEEECCcch
Confidence 66666555310 0 001011111110 0113466788888899998888887766643
No 421
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=28.91 E-value=5.1e+02 Score=24.61 Aligned_cols=124 Identities=12% Similarity=0.164 Sum_probs=69.1
Q ss_pred HHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhhc
Q 024709 54 KIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCRE 133 (264)
Q Consensus 54 ~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~~ 133 (264)
-+...|+..|-++.+. .|..+....+...-..|++.+.... ..|.. .+++.-.++ +|+
T Consensus 125 alA~~a~~~G~~~~iv-----------vp~~~~~~k~~~lr~~GA~Vi~~~~--~~~~~--~~~~~a~~l---~~~---- 182 (368)
T PLN02556 125 SLAFMAAMKGYKMILT-----------MPSYTSLERRVTMRAFGAELVLTDP--TKGMG--GTVKKAYEL---LES---- 182 (368)
T ss_pred HHHHHHHHcCCCEEEE-----------ECCCCCHHHHHHHHHcCCEEEEECC--CCCcc--HHHHHHHHH---HHh----
Confidence 4556889999999983 3444444445666678999877542 22321 233222222 221
Q ss_pred ccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhc--CCcEEEEEcCCchHHHHHh----hcCCCCcEEEEcCChh
Q 024709 134 GKQHATFEPPPISSSVSAGIPGEICNGAAKIANKL--KASALFVYTKTGQMASLLS----RSRPDCPIFAFAPMSS 203 (264)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l--~A~aIVv~T~sG~tA~~iS----r~RP~~PIiAvT~~~~ 203 (264)
.. ..++..|. .. +....--....+.++.+++ ..++||+..-||.|.--++ .+.|.+.|+++-+...
T Consensus 183 ~~--~~~~~~q~-~n-p~~~~~g~~ttg~EI~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~ 254 (368)
T PLN02556 183 TP--DAFMLQQF-SN-PANTQVHFETTGPEIWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAES 254 (368)
T ss_pred cC--CCCccCCC-CC-HHHHHHHHHHHHHHHHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCC
Confidence 10 01112221 11 1111111233455666665 4799999999999865444 5579999999998554
No 422
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=28.86 E-value=2.5e+02 Score=24.76 Aligned_cols=82 Identities=16% Similarity=0.033 Sum_probs=53.1
Q ss_pred cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhcccccccccccc
Q 024709 29 SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESA 108 (264)
Q Consensus 29 ~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta 108 (264)
+|.+.+|+- +. ......-+.-...+-+.|+..+.||+.-..+ .+ .++......|+|++-..+.--
T Consensus 132 aDYv~~Gpv-~t-~tK~~~~p~gl~~l~~~~~~~~iPvvAIGGI--------~~-----~n~~~~~~~GA~giAvisai~ 196 (221)
T PRK06512 132 PDYLFFGKL-GA-DNKPEAHPRNLSLAEWWAEMIEIPCIVQAGS--------DL-----ASAVEVAETGAEFVALERAVF 196 (221)
T ss_pred CCEEEECCC-CC-CCCCCCCCCChHHHHHHHHhCCCCEEEEeCC--------CH-----HHHHHHHHhCCCEEEEhHHhh
Confidence 899999986 33 2221111111111223566778999863321 22 344677788999999998888
Q ss_pred CCCChHHHHHHHHHHHH
Q 024709 109 MGQFPDKALAVLRSVSL 125 (264)
Q Consensus 109 ~G~yP~eav~~m~~i~~ 125 (264)
.-..|.++++-+.+++.
T Consensus 197 ~~~dp~~a~~~~~~~~~ 213 (221)
T PRK06512 197 DAHDPPLAVAQANALLD 213 (221)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 88899999998887654
No 423
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.81 E-value=2.1e+02 Score=25.00 Aligned_cols=59 Identities=10% Similarity=0.147 Sum_probs=41.5
Q ss_pred CCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhcccccccccc
Q 024709 36 RGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGE 106 (264)
Q Consensus 36 rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~e 106 (264)
|-.+...+..+-.....+.+.+.|++.|.-+.+.. +..|...+.+....++|++++.+-
T Consensus 7 p~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~------------~~~~~~~~~~~~~~~~dgiii~~~ 65 (283)
T cd06279 7 TDSLSYAFSDPVASQFLAGVAEVLDAAGVNLLLLP------------ASSEDSDSALVVSALVDGFIVYGV 65 (283)
T ss_pred CCcccccccCccHHHHHHHHHHHHHHCCCEEEEec------------CccHHHHHHHHHhcCCCEEEEeCC
Confidence 33333344556677888999999999998887632 111445666788899999999764
No 424
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=28.78 E-value=22 Score=32.93 Aligned_cols=20 Identities=30% Similarity=0.687 Sum_probs=14.3
Q ss_pred hcHHHHHhh--cceeeecCCCc
Q 024709 20 KNLNEIILA--SDGAMVARGDL 39 (264)
Q Consensus 20 ~n~~eI~~~--~Dgi~i~rgdL 39 (264)
+..+++++. +||||||||=|
T Consensus 196 ~d~~~~~~~tg~dgvMigRgal 217 (309)
T PF01207_consen 196 EDAERMLEQTGADGVMIGRGAL 217 (309)
T ss_dssp HHHHHHCCCH-SSEEEESHHHC
T ss_pred HHHHHHHHhcCCcEEEEchhhh
Confidence 334444554 99999999976
No 425
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=28.62 E-value=32 Score=32.24 Aligned_cols=23 Identities=43% Similarity=0.798 Sum_probs=17.8
Q ss_pred HHhcHHHHHhh--cceeeecCCCcc
Q 024709 18 SLKNLNEIILA--SDGAMVARGDLG 40 (264)
Q Consensus 18 ~~~n~~eI~~~--~Dgi~i~rgdL~ 40 (264)
..+...+.++. +||+|||||=++
T Consensus 209 s~~~a~~~l~~tg~DgVMigRga~~ 233 (323)
T COG0042 209 SLEDAKEMLEYTGADGVMIGRGALG 233 (323)
T ss_pred CHHHHHHHHHhhCCCEEEEcHHHcc
Confidence 34566777777 899999999773
No 426
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=28.61 E-value=1.8e+02 Score=25.77 Aligned_cols=80 Identities=20% Similarity=0.161 Sum_probs=42.7
Q ss_pred cceEEEeccC---HHHHhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCC
Q 024709 6 NIAVIAKIES---IDSLKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPI 81 (264)
Q Consensus 6 ~~~iiakIE~---~~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ 81 (264)
++.|..||=. .+.++-...+.+. +|+|-+.-+.-+ +..++ ..++..+ .+.|+|... ..
T Consensus 139 ~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~~~g---~~ad~-----~~I~~i~-~~ipVIgnG---------gI 200 (233)
T cd02911 139 GVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAMDPG---NHADL-----KKIRDIS-TELFIIGNN---------SV 200 (233)
T ss_pred CCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcCCCC---CCCcH-----HHHHHhc-CCCEEEEEC---------Cc
Confidence 4677888831 1122222222233 888776433222 11222 2333333 579988633 33
Q ss_pred CChHHHHHHHHHHHhcccccccccc
Q 024709 82 PTRAEVADVSELVRQQADALMLSGE 106 (264)
Q Consensus 82 ptrae~~dv~~~v~~g~d~~~ls~e 106 (264)
-+. .|...++..|+|+||+.--
T Consensus 201 ~s~---eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 201 TTI---ESAKEMFSYGADMVSVARA 222 (233)
T ss_pred CCH---HHHHHHHHcCCCEEEEcCC
Confidence 333 4566777889999999733
No 427
>PRK11579 putative oxidoreductase; Provisional
Probab=28.59 E-value=1.7e+02 Score=27.03 Aligned_cols=85 Identities=11% Similarity=0.132 Sum_probs=52.7
Q ss_pred HHhcHHHHHhh--cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCC-CCChHHHHHHHHHH
Q 024709 18 SLKNLNEIILA--SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYP-IPTRAEVADVSELV 94 (264)
Q Consensus 18 ~~~n~~eI~~~--~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~-~ptrae~~dv~~~v 94 (264)
...+++|+++- .|.|+|+ .|. ..-..++.+|-++||+|++ +.| ..|.+|...+..+.
T Consensus 52 ~~~~~~ell~~~~vD~V~I~-------tp~----~~H~~~~~~al~aGkhVl~---------EKPla~t~~ea~~l~~~a 111 (346)
T PRK11579 52 VVSEPQHLFNDPNIDLIVIP-------TPN----DTHFPLAKAALEAGKHVVV---------DKPFTVTLSQARELDALA 111 (346)
T ss_pred eeCCHHHHhcCCCCCEEEEc-------CCc----HHHHHHHHHHHHCCCeEEE---------eCCCCCCHHHHHHHHHHH
Confidence 34788999975 8999985 332 2356778888899999997 555 35777776666655
Q ss_pred HhccccccccccccCCCChHHHHHHHHHHHHH
Q 024709 95 RQQADALMLSGESAMGQFPDKALAVLRSVSLR 126 (264)
Q Consensus 95 ~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~ 126 (264)
... ..++.-+- ..--+| +++.+++++.+
T Consensus 112 ~~~-g~~l~v~~-~~R~~p--~~~~~k~~i~~ 139 (346)
T PRK11579 112 KSA-GRVLSVFH-NRRWDS--DFLTLKALLAE 139 (346)
T ss_pred HHh-CCEEEEEe-eccCCH--HHHHHHHHHhc
Confidence 442 22221111 111224 67777777754
No 428
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=28.50 E-value=4.1e+02 Score=25.36 Aligned_cols=70 Identities=20% Similarity=0.209 Sum_probs=46.7
Q ss_pred CHHHHhcHHHHHhh---cceeeecCCCcccCCCCCChHHHHHHHHHHHHHh-CCCEEEEhhhhhhhhhCCCCChHHHHHH
Q 024709 15 SIDSLKNLNEIILA---SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQL-NKPVIVASQLLESMIEYPIPTRAEVADV 90 (264)
Q Consensus 15 ~~~~~~n~~eI~~~---~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~-gkpv~~atq~leSM~~~~~ptrae~~dv 90 (264)
+.+-.+.++.+++. .|.|.|. .-. ---..|...++..++. ..+.+++.+++ .|..+
T Consensus 105 ~~~d~er~~~L~~a~~~~d~iviD-------~Ah-Ghs~~~i~~ik~ir~~~p~~~viaGNV~-------T~e~a----- 164 (343)
T TIGR01305 105 SDNDLEKMTSILEAVPQLKFICLD-------VAN-GYSEHFVEFVKLVREAFPEHTIMAGNVV-------TGEMV----- 164 (343)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEEE-------CCC-CcHHHHHHHHHHHHhhCCCCeEEEeccc-------CHHHH-----
Confidence 45667889999987 7998885 221 2234555666666654 45677766554 44444
Q ss_pred HHHHHhcccccccc
Q 024709 91 SELVRQQADALMLS 104 (264)
Q Consensus 91 ~~~v~~g~d~~~ls 104 (264)
..++..|+|++..+
T Consensus 165 ~~Li~aGAD~ikVg 178 (343)
T TIGR01305 165 EELILSGADIVKVG 178 (343)
T ss_pred HHHHHcCCCEEEEc
Confidence 67888999999876
No 429
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=28.48 E-value=68 Score=28.26 Aligned_cols=35 Identities=14% Similarity=0.282 Sum_probs=27.2
Q ss_pred CcEEEEEcCCchHHHHHh----hcCCCCcEEEEcCChhh
Q 024709 170 ASALFVYTKTGQMASLLS----RSRPDCPIFAFAPMSSV 204 (264)
Q Consensus 170 A~aIVv~T~sG~tA~~iS----r~RP~~PIiAvT~~~~~ 204 (264)
-|.++.++.||.|...+. --|-..||+++|.++..
T Consensus 87 ~DvviaiS~SGeT~el~~~~~~aK~~g~~liaiT~~~~S 125 (202)
T COG0794 87 GDVVIAISGSGETKELLNLAPKAKRLGAKLIAITSNPDS 125 (202)
T ss_pred CCEEEEEeCCCcHHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 468999999999977653 23456999999987763
No 430
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=28.43 E-value=51 Score=30.11 Aligned_cols=33 Identities=9% Similarity=0.183 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCchHHHHH-----hhcCCCCcEEEEcCCh
Q 024709 169 KASALFVYTKTGQMASLL-----SRSRPDCPIFAFAPMS 202 (264)
Q Consensus 169 ~A~aIVv~T~sG~tA~~i-----Sr~RP~~PIiAvT~~~ 202 (264)
+-+.+|++|.||.|...+ +|-| .+|||++|.+.
T Consensus 89 ~~d~~i~iS~sG~t~~~~~~~~~ak~~-g~~vI~iT~~~ 126 (321)
T PRK11543 89 SRDVMLFISYSGGAKELDLIIPRLEDK-SIALLAMTGKP 126 (321)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHc-CCeEEEEECCC
Confidence 347999999999986654 3444 69999999865
No 431
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=28.23 E-value=1.2e+02 Score=28.60 Aligned_cols=52 Identities=19% Similarity=0.312 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHh--------CCCEEEEhhhhhhhhhCCCCChHHHHHHHH-HHHhccccccccccc
Q 024709 48 VPSIQEKIVQLCRQL--------NKPVIVASQLLESMIEYPIPTRAEVADVSE-LVRQQADALMLSGES 107 (264)
Q Consensus 48 v~~~qk~ii~~~~~~--------gkpv~~atq~leSM~~~~~ptrae~~dv~~-~v~~g~d~~~ls~et 107 (264)
.++...++++.+++. .+|+++ ...|.-+..++.+++. +...|+|++.+.+-+
T Consensus 187 ~~~~~~~i~~~V~~~~~~~~~~~~~Pv~v--------KLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~ 247 (335)
T TIGR01036 187 YKAELRDLLTAVKQEQDGLRRVHRVPVLV--------KIAPDLTESDLEDIADSLVELGIDGVIATNTT 247 (335)
T ss_pred CHHHHHHHHHHHHHHHHhhhhccCCceEE--------EeCCCCCHHHHHHHHHHHHHhCCcEEEEECCC
Confidence 355666666666643 289997 2345556557777777 667899999999755
No 432
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=28.16 E-value=45 Score=29.54 Aligned_cols=75 Identities=23% Similarity=0.314 Sum_probs=47.3
Q ss_pred cceeeecCCCcccCC-CC----CChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhC--CCCChHHHHHHHHHHHhccccc
Q 024709 29 SDGAMVARGDLGAQV-PL----EQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEY--PIPTRAEVADVSELVRQQADAL 101 (264)
Q Consensus 29 ~Dgi~i~rgdL~~~~-~~----~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~--~~ptrae~~dv~~~v~~g~d~~ 101 (264)
.|.|+|.--.|--.- +. .++..+-+++=+.|++++.||++++|+=..-... ..|+.+++.+ ...+...||.+
T Consensus 131 ~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~~i~vi~~sQlnr~~~~~~~~~p~l~dl~~-sg~Ie~~AD~v 209 (259)
T PF03796_consen 131 VDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKELNIPVIALSQLNREAEDREDKRPSLSDLRE-SGAIEQDADVV 209 (259)
T ss_dssp EEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHHTSEEEEEEEBSGGGGGSSSCS--HHHHCS-TSSHHHH-SEE
T ss_pred CCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHcCCeEEEccccChhhhcccccccchhhhhh-hHHHHHHHhhh
Confidence 468888765552221 21 4556666778888999999999999987665443 3565554322 24677888888
Q ss_pred ccc
Q 024709 102 MLS 104 (264)
Q Consensus 102 ~ls 104 (264)
++=
T Consensus 210 l~l 212 (259)
T PF03796_consen 210 LFL 212 (259)
T ss_dssp EEE
T ss_pred hhh
Confidence 874
No 433
>PRK12281 rplX 50S ribosomal protein L24; Reviewed
Probab=28.09 E-value=41 Score=24.87 Aligned_cols=13 Identities=31% Similarity=0.695 Sum_probs=11.8
Q ss_pred CCCCCCEEEEEec
Q 024709 241 LIKSGDLIIVVSD 253 (264)
Q Consensus 241 ~~~~GD~VVvvsG 253 (264)
-+++||.|++++|
T Consensus 6 ~I~kGD~V~Vi~G 18 (76)
T PRK12281 6 KVKKGDMVKVIAG 18 (76)
T ss_pred cccCCCEEEEeEc
Confidence 3789999999999
No 434
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=28.08 E-value=2.3e+02 Score=26.62 Aligned_cols=68 Identities=18% Similarity=0.277 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHH-HHhccccccccccccCCCChHHHHHHHHHHHH
Q 024709 51 IQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSEL-VRQQADALMLSGESAMGQFPDKALAVLRSVSL 125 (264)
Q Consensus 51 ~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~-v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~ 125 (264)
..++.++.++++|.-+.+. +.. ....+..++.+.+.. ...|+|++.+. +|+=..+|.+.-+..+.+-.
T Consensus 116 ~~~~~i~~ak~~G~~v~~~--l~~----a~~~~~e~l~~~a~~~~~~Ga~~i~i~-DT~G~~~P~~v~~~v~~l~~ 184 (337)
T PRK08195 116 VSEQHIGLARELGMDTVGF--LMM----SHMAPPEKLAEQAKLMESYGAQCVYVV-DSAGALLPEDVRDRVRALRA 184 (337)
T ss_pred HHHHHHHHHHHCCCeEEEE--EEe----ccCCCHHHHHHHHHHHHhCCCCEEEeC-CCCCCCCHHHHHHHHHHHHH
Confidence 4689999999999887763 222 245677777666664 55699999887 99999999887777776643
No 435
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=28.06 E-value=4.2e+02 Score=24.43 Aligned_cols=69 Identities=12% Similarity=0.227 Sum_probs=47.4
Q ss_pred ChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHH
Q 024709 47 QVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLR 126 (264)
Q Consensus 47 ~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~ 126 (264)
..|+.-...++.|.++|||.++.| .--|.++...+..+... + .++.+ ++|-+ -|-.|.++.+.
T Consensus 77 T~P~~~~~~l~~~~~~~~~lVIGT---------TGf~~e~~~~l~~~a~~-v-~vv~a-----~NfSi-Gvnll~~l~~~ 139 (266)
T COG0289 77 TTPEATLENLEFALEHGKPLVIGT---------TGFTEEQLEKLREAAEK-V-PVVIA-----PNFSL-GVNLLFKLAEQ 139 (266)
T ss_pred CCchhhHHHHHHHHHcCCCeEEEC---------CCCCHHHHHHHHHHHhh-C-CEEEe-----ccchH-HHHHHHHHHHH
Confidence 356788899999999999999987 45556666666666555 3 23444 34444 34456677788
Q ss_pred HHhhhh
Q 024709 127 IEKWCR 132 (264)
Q Consensus 127 ~E~~~~ 132 (264)
+-+++.
T Consensus 140 aak~l~ 145 (266)
T COG0289 140 AAKVLD 145 (266)
T ss_pred HHHhcC
Confidence 877765
No 436
>PLN02591 tryptophan synthase
Probab=28.05 E-value=4.1e+02 Score=23.96 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=31.9
Q ss_pred HHHhcHHHHHhh--cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEE
Q 024709 17 DSLKNLNEIILA--SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIV 68 (264)
Q Consensus 17 ~~~~n~~eI~~~--~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~ 68 (264)
-|++++=+-++. +||++|- | +|+ +-...+.++|+++|...|.
T Consensus 93 ~G~~~F~~~~~~aGv~Gviip--D----LP~----ee~~~~~~~~~~~gl~~I~ 136 (250)
T PLN02591 93 RGIDKFMATIKEAGVHGLVVP--D----LPL----EETEALRAEAAKNGIELVL 136 (250)
T ss_pred hHHHHHHHHHHHcCCCEEEeC--C----CCH----HHHHHHHHHHHHcCCeEEE
Confidence 488887555555 8999996 3 453 5567889999999988886
No 437
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=28.04 E-value=2.9e+02 Score=24.88 Aligned_cols=71 Identities=10% Similarity=0.145 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHH-HHHhccccccccccccCCCChHHHHHHHHHHHH
Q 024709 48 VPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSE-LVRQQADALMLSGESAMGQFPDKALAVLRSVSL 125 (264)
Q Consensus 48 v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~-~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~ 125 (264)
.....+.+++.++++|..|.+. +. ...+-+..++.+.+. +...|+|.+.|. +|.=..+|.+.-+.+..+..
T Consensus 107 ~~~~~~~~i~~ak~~G~~v~~~--~~----~a~~~~~~~~~~~~~~~~~~g~~~i~l~-DT~G~~~P~~v~~lv~~l~~ 178 (266)
T cd07944 107 EFDEALPLIKAIKEKGYEVFFN--LM----AISGYSDEELLELLELVNEIKPDVFYIV-DSFGSMYPEDIKRIISLLRS 178 (266)
T ss_pred cHHHHHHHHHHHHHCCCeEEEE--EE----eecCCCHHHHHHHHHHHHhCCCCEEEEe-cCCCCCCHHHHHHHHHHHHH
Confidence 3455577899999999877763 22 223345666666664 455699999997 99999999988887777654
No 438
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=28.03 E-value=1.2e+02 Score=28.73 Aligned_cols=62 Identities=15% Similarity=0.231 Sum_probs=48.2
Q ss_pred cceeeecCCCcccCCC----CCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhcccccccc
Q 024709 29 SDGAMVARGDLGAQVP----LEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLS 104 (264)
Q Consensus 29 ~Dgi~i~rgdL~~~~~----~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls 104 (264)
.|+++....|=|-+.+ .......-.+|.+.++. .|||.|.-+- .-.+++.|...|+|+|-..
T Consensus 148 ~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~--iPViAAGGI~------------dg~~i~AAlalGA~gVq~G 213 (336)
T COG2070 148 ADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDG--IPVIAAGGIA------------DGRGIAAALALGADGVQMG 213 (336)
T ss_pred CCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcC--CCEEEecCcc------------ChHHHHHHHHhccHHHHhh
Confidence 8999999888888888 45557777777777766 8999988655 2346788999999987654
No 439
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=28.00 E-value=1.3e+02 Score=28.67 Aligned_cols=103 Identities=13% Similarity=0.141 Sum_probs=65.5
Q ss_pred ceEEEeccCHHHHhcHHHHHhh-cceeeecCCCc---ccCCCCCChHHHHHHHHHHHHHhCCCEEE-----E-h--hhh-
Q 024709 7 IAVIAKIESIDSLKNLNEIILA-SDGAMVARGDL---GAQVPLEQVPSIQEKIVQLCRQLNKPVIV-----A-S--QLL- 73 (264)
Q Consensus 7 ~~iiakIE~~~~~~n~~eI~~~-~Dgi~i~rgdL---~~~~~~~~v~~~qk~ii~~~~~~gkpv~~-----a-t--q~l- 73 (264)
+.|..-...-.-++.+..-+.. -+.||+.-..| -..+|+++-....|++++.|+.+|.+|=. . . +|-
T Consensus 74 VPValHLDHg~~~e~i~~Ai~~GFtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG~igg~e~~~~g 153 (347)
T TIGR01521 74 IPVVMHQDHGNSPATCQRAIQLGFTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCLGSLETGMGE 153 (347)
T ss_pred CcEEEECCCCCCHHHHHHHHHcCCCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeecccccccccc
Confidence 4455555554444444444444 78899986654 23468899999999999999999988621 0 1 000
Q ss_pred --hhh---------hhCCCCChHHHHHHHHHHH-hccccccccccccCCCChH
Q 024709 74 --ESM---------IEYPIPTRAEVADVSELVR-QQADALMLSGESAMGQFPD 114 (264)
Q Consensus 74 --eSM---------~~~~~ptrae~~dv~~~v~-~g~d~~~ls~eta~G~yP~ 114 (264)
+.- .....| .+...++. -|+|++-.|--|+-|.|+-
T Consensus 154 ~~d~~~~~~~~~~~~~~T~P-----eeA~~Fv~~TgvD~LAvaiGt~HG~Yk~ 201 (347)
T TIGR01521 154 AEDGHGFEGVLDHSQLLTDP-----EEAADFVKKTKVDALAVAIGTSHGAYKF 201 (347)
T ss_pred cccCcccccccchhhcCCCH-----HHHHHHHHHHCcCEEehhcccccCCcCC
Confidence 000 001122 34466775 4999999999999999953
No 440
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=27.96 E-value=3.4e+02 Score=22.76 Aligned_cols=67 Identities=18% Similarity=0.265 Sum_probs=45.9
Q ss_pred HHhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHh
Q 024709 18 SLKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQ 96 (264)
Q Consensus 18 ~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~ 96 (264)
-.+.+++.++. +|.+.+-=.|+. ..++...-+++...|+..|.|+++. .++..+...
T Consensus 23 ~~~~~~~~~~~gv~~v~lr~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~------------------~~~~~a~~~ 80 (212)
T PRK00043 23 LLEVVEAALEGGVTLVQLREKGLD----TRERLELARALKELCRRYGVPLIVN------------------DRVDLALAV 80 (212)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCC----HHHHHHHHHHHHHHHHHhCCeEEEe------------------ChHHHHHHc
Confidence 44556666666 788888655542 2444445566778899999999862 133567778
Q ss_pred cccccccccc
Q 024709 97 QADALMLSGE 106 (264)
Q Consensus 97 g~d~~~ls~e 106 (264)
|+|++.+..+
T Consensus 81 gad~vh~~~~ 90 (212)
T PRK00043 81 GADGVHLGQD 90 (212)
T ss_pred CCCEEecCcc
Confidence 9999988654
No 441
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=27.93 E-value=2.4e+02 Score=25.79 Aligned_cols=81 Identities=21% Similarity=0.192 Sum_probs=43.9
Q ss_pred ceEEEeccCHHHHhcHHHHHhh-cceeeec-CCCcccCC--CCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCC
Q 024709 7 IAVIAKIESIDSLKNLNEIILA-SDGAMVA-RGDLGAQV--PLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIP 82 (264)
Q Consensus 7 ~~iiakIE~~~~~~n~~eI~~~-~Dgi~i~-rgdL~~~~--~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~p 82 (264)
..++.|.- ...+......+. +|+|.+. +| |..+ +.. -.....++.+.+. -..|+|.+..+-
T Consensus 173 ~pvivK~v--~s~~~a~~a~~~G~d~I~v~~~g--G~~~~~g~~-~~~~l~~i~~~~~-~~ipvia~GGI~--------- 237 (299)
T cd02809 173 GPLILKGI--LTPEDALRAVDAGADGIVVSNHG--GRQLDGAPA-TIDALPEIVAAVG-GRIEVLLDGGIR--------- 237 (299)
T ss_pred CCEEEeec--CCHHHHHHHHHCCCCEEEEcCCC--CCCCCCCcC-HHHHHHHHHHHhc-CCCeEEEeCCCC---------
Confidence 56777731 222333344444 8999883 22 2221 211 1222222322221 148988755322
Q ss_pred ChHHHHHHHHHHHhccccccccc
Q 024709 83 TRAEVADVSELVRQQADALMLSG 105 (264)
Q Consensus 83 trae~~dv~~~v~~g~d~~~ls~ 105 (264)
...|+..++..|+|+|++..
T Consensus 238 ---~~~d~~kal~lGAd~V~ig~ 257 (299)
T cd02809 238 ---RGTDVLKALALGADAVLIGR 257 (299)
T ss_pred ---CHHHHHHHHHcCCCEEEEcH
Confidence 23688999999999999975
No 442
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=27.85 E-value=99 Score=25.83 Aligned_cols=41 Identities=7% Similarity=0.142 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhcccccc
Q 024709 50 SIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALM 102 (264)
Q Consensus 50 ~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ 102 (264)
..-+.+++.|++.|.+|.+-| ..+ +..+.......|+|+++
T Consensus 136 ~~~~~~v~~~~~~g~~v~~wt----------vn~--~~~~~~~l~~~Gvd~i~ 176 (179)
T cd08555 136 IKDTELIASANKLGLLSRIWT----------VND--NNEIINKFLNLGVDGLI 176 (179)
T ss_pred hcCHHHHHHHHHCCCEEEEEe----------eCC--hHHHHHHHHHcCCCEEe
Confidence 345789999999999999977 222 13344677788999986
No 443
>PRK05638 threonine synthase; Validated
Probab=27.83 E-value=5.6e+02 Score=24.83 Aligned_cols=86 Identities=12% Similarity=0.167 Sum_probs=50.6
Q ss_pred CCCchHHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHhhc--CCCCcEEEEcCChh--hhhhcccccccEEEEecCCCCH
Q 024709 150 SAGIPGEICNGAAKIANKLKASALFVYTKTGQMASLLSRS--RPDCPIFAFAPMSS--VRRRLNLQWGLVPFCLNFSDDM 225 (264)
Q Consensus 150 ~~~~~~aIA~aAv~lA~~l~A~aIVv~T~sG~tA~~iSr~--RP~~PIiAvT~~~~--~aR~L~L~~GV~P~~~~~~~~~ 225 (264)
..+..+-.+..++..|...+.+.|++ ..||+++..+|.| +-..|.+.+.|..- .-..+...+|..-+.++ .+.
T Consensus 92 tGSfKdR~a~~~i~~a~~~g~~~vv~-aSsGN~g~alA~~aa~~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~v~--~~~ 168 (442)
T PRK05638 92 TGSFRDRLATVAVSYGLPYAANGFIV-ASDGNAAASVAAYSARAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYG--ESV 168 (442)
T ss_pred CCChHHHHHHHHHHHHHHcCCCEEEE-eCCChHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHhcCcEEEEEC--CCH
Confidence 44566777777777777788886666 6789999888754 34566777666432 22223344566655554 233
Q ss_pred HHHHHHHHHHHHH
Q 024709 226 ESNLNQTFSLLKA 238 (264)
Q Consensus 226 e~~i~~al~~~~~ 238 (264)
++.++.+.+.+.+
T Consensus 169 ~~~~~~a~~~~~~ 181 (442)
T PRK05638 169 DEAIEYAEELARL 181 (442)
T ss_pred HHHHHHHHHHHHh
Confidence 4444444444333
No 444
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=27.82 E-value=1.1e+02 Score=32.11 Aligned_cols=50 Identities=12% Similarity=0.236 Sum_probs=36.6
Q ss_pred HhcHHHHHhhcceeeecCCCcc---cC---CCCCChHHHHHHHHHHHHHhCCCEEE
Q 024709 19 LKNLNEIILASDGAMVARGDLG---AQ---VPLEQVPSIQEKIVQLCRQLNKPVIV 68 (264)
Q Consensus 19 ~~n~~eI~~~~Dgi~i~rgdL~---~~---~~~~~v~~~qk~ii~~~~~~gkpv~~ 68 (264)
++..-+.++-+|.+++.=|+-. -| -.--.++..|.++|++..+.|||+++
T Consensus 492 ~~~a~~~A~~aD~vIv~vg~~~~~~~E~~Dr~~l~Lp~~Q~~Li~~v~~~~~~vVv 547 (765)
T PRK15098 492 IDEAVQAAKQADVVVAVVGEAQGMAHEASSRTDITIPQSQRDLIAALKATGKPLVL 547 (765)
T ss_pred HHHHHHHHhcCCEEEEEEcCCCCccccCCCcccccCCHHHHHHHHHHHHhCcCEEE
Confidence 4444455556999999877542 22 11247899999999999999999998
No 445
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=27.80 E-value=4.7e+02 Score=23.84 Aligned_cols=118 Identities=14% Similarity=0.149 Sum_probs=65.6
Q ss_pred HHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHhhhhc
Q 024709 54 KIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEKWCRE 133 (264)
Q Consensus 54 ~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~~~~~ 133 (264)
-+...|+..|.|+.+- .|.......+...-..|++.+...+ ..-++.....+++++- +
T Consensus 84 alA~~a~~~G~~~~iv-----------vp~~~~~~k~~~l~~~GA~Vi~~~~------~~~~~~~~a~~~~~~~--~--- 141 (324)
T cd01563 84 SLAAYAARAGIKCVVF-----------LPAGKALGKLAQALAYGATVLAVEG------NFDDALRLVRELAEEN--W--- 141 (324)
T ss_pred HHHHHHHHcCCceEEE-----------EeCCCCHHHHHHHHHcCCEEEEECC------cHHHHHHHHHHHHHhc--C---
Confidence 3556899999999872 2222222333444457998776432 2345555444443321 1
Q ss_pred ccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcC---CcEEEEEcCCchHHHHHhhc----C------CCCcEEEEcC
Q 024709 134 GKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLK---ASALFVYTKTGQMASLLSRS----R------PDCPIFAFAP 200 (264)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~---A~aIVv~T~sG~tA~~iSr~----R------P~~PIiAvT~ 200 (264)
.| ..+... +..+ +.-..-+.++.++++ .+.||+.+-+|.++--++++ + |...|+++-+
T Consensus 142 --~~----~~~~~n--~~~~-~g~~t~~~Ei~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~ 212 (324)
T cd01563 142 --IY----LSNSLN--PYRL-EGQKTIAFEIAEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQA 212 (324)
T ss_pred --ee----ccCCCC--ccee-cchhhhHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEec
Confidence 11 111111 1111 122334556666664 58999999999987766643 3 5778999877
Q ss_pred Ch
Q 024709 201 MS 202 (264)
Q Consensus 201 ~~ 202 (264)
..
T Consensus 213 ~~ 214 (324)
T cd01563 213 EG 214 (324)
T ss_pred CC
Confidence 43
No 446
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=27.70 E-value=1e+02 Score=26.77 Aligned_cols=33 Identities=18% Similarity=0.354 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCchHHHHH-----hhcCCCCcEEEEcCCh
Q 024709 169 KASALFVYTKTGQMASLL-----SRSRPDCPIFAFAPMS 202 (264)
Q Consensus 169 ~A~aIVv~T~sG~tA~~i-----Sr~RP~~PIiAvT~~~ 202 (264)
.-+.++++|.||.+...+ +|-+ .+|+|++|...
T Consensus 109 ~gDvli~iS~SG~s~~v~~a~~~Ak~~-G~~vI~IT~~~ 146 (196)
T PRK10886 109 AGDVLLAISTRGNSRDIVKAVEAAVTR-DMTIVALTGYD 146 (196)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence 347899999999976543 4554 79999999754
No 447
>PRK13938 phosphoheptose isomerase; Provisional
Probab=27.51 E-value=55 Score=28.42 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=0.0
Q ss_pred cEEEEEcCCchHHHHHhhcC----CCCcEEEEcCChh
Q 024709 171 SALFVYTKTGQMASLLSRSR----PDCPIFAFAPMSS 203 (264)
Q Consensus 171 ~aIVv~T~sG~tA~~iSr~R----P~~PIiAvT~~~~ 203 (264)
+.+|++|.||+|...+.-.+ -.+|++++|.+..
T Consensus 115 DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 115 DTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCC
No 448
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=27.49 E-value=22 Score=31.95 Aligned_cols=162 Identities=19% Similarity=0.260 Sum_probs=69.2
Q ss_pred cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhcccccccccccc
Q 024709 29 SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESA 108 (264)
Q Consensus 29 ~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta 108 (264)
.|+||||=.| .....+++....|+. .++|++. .|.-. +.+..++|+++.- ---
T Consensus 33 tDai~VGGS~--~~~~~d~vv~~ik~~------~~lPvil------------fPg~~------~~vs~~aDail~~-svl 85 (230)
T PF01884_consen 33 TDAIIVGGSD--TGVTLDNVVALIKRV------TDLPVIL------------FPGSP------SQVSPGADAILFP-SVL 85 (230)
T ss_dssp -SEEEEE-ST--HCHHHHHHHHHHHHH------SSS-EEE------------ETSTC------CG--TTSSEEEEE-EET
T ss_pred CCEEEECCCC--CccchHHHHHHHHhc------CCCCEEE------------eCCCh------hhcCcCCCEEEEE-EEe
Confidence 8999999544 222234444433333 9999997 56665 4556899998763 123
Q ss_pred CCCChHHHHHHHHHHHHHHHhhhhcc--cccccCCCCC----CC--CCCCCCchHHHHHHHHHHHHhcCCcEEEEEcCCc
Q 024709 109 MGQFPDKALAVLRSVSLRIEKWCREG--KQHATFEPPP----IS--SSVSAGIPGEICNGAAKIANKLKASALFVYTKTG 180 (264)
Q Consensus 109 ~G~yP~eav~~m~~i~~~~E~~~~~~--~~~~~~~~~~----~~--~~~~~~~~~aIA~aAv~lA~~l~A~aIVv~T~sG 180 (264)
+|..|--.+.....-.....++..+. .-|-...... +. .+.+.+ .+.++..+...++-++-+.|.+---||
T Consensus 86 Ns~n~~~iig~~~~aa~~~~~~~~e~ip~gYivi~~g~~v~~v~~a~pi~~~-~~~iaa~~alA~~~~g~~~iYLEaGSG 164 (230)
T PF01884_consen 86 NSRNPYWIIGAQVEAAPLIKKLGLEVIPTGYIVINPGSKVARVTGARPIPLD-KPEIAAAAALAAEYLGMPIIYLEAGSG 164 (230)
T ss_dssp TBSSTTTTTHHHHHHHHHCHHHHCCEEEEEEEEESTTSHHHHHTTB-----S-HHHHHHHHHHHHHHTT-SEEEEE--TT
T ss_pred cCCCcchHhhHHHHHHHHHHhhcceecceEEEEECCCCceEEeecceecCCC-cHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 33334222222222111111111000 0011000000 00 012333 345665555577777888666655466
Q ss_pred h---H---HHHHhhcCCCCcEEEEc--CChhhhhhcccccccEEEEe
Q 024709 181 Q---M---ASLLSRSRPDCPIFAFA--PMSSVRRRLNLQWGLVPFCL 219 (264)
Q Consensus 181 ~---t---A~~iSr~RP~~PIiAvT--~~~~~aR~L~L~~GV~P~~~ 219 (264)
. . .....+.-.+.|+|.-- ++.+.++.+ +..|---+.+
T Consensus 165 a~~~v~~~v~~~~~~~~~~~LivGGGIrs~e~A~~~-~~aGAD~IVv 210 (230)
T PF01884_consen 165 AYGPVPEEVIAAVKKLSDIPLIVGGGIRSPEQAREM-AEAGADTIVV 210 (230)
T ss_dssp SSS-HHHHHHHHHHHSSSSEEEEESS--SHHHHHHH-HCTTSSEEEE
T ss_pred CCCCccHHHHHHHHhcCCccEEEeCCcCCHHHHHHH-HHCCCCEEEE
Confidence 5 1 22334445667766543 455555543 3344444444
No 449
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=27.38 E-value=1.1e+02 Score=24.37 Aligned_cols=45 Identities=20% Similarity=0.350 Sum_probs=29.9
Q ss_pred HHHHhcHHHHHhh--cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEE
Q 024709 16 IDSLKNLNEIILA--SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIV 68 (264)
Q Consensus 16 ~~~~~n~~eI~~~--~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~ 68 (264)
...++++.+++.. +|-|+|+ +|..+ ..-.+++++.|+++|..+-+
T Consensus 127 lg~~~~l~~~~~~~~id~v~ia-------l~~~~-~~~i~~ii~~~~~~~v~v~~ 173 (175)
T PF13727_consen 127 LGDLDDLPELVREHDIDEVIIA-------LPWSE-EEQIKRIIEELENHGVRVRV 173 (175)
T ss_dssp E--GGGHHHHHHHHT--EEEE---------TTS--HHHHHHHHHHHHTTT-EEEE
T ss_pred EcCHHHHHHHHHhCCCCEEEEE-------cCccC-HHHHHHHHHHHHhCCCEEEE
Confidence 3456888888888 9999996 55444 45678999999999998865
No 450
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=27.32 E-value=36 Score=32.56 Aligned_cols=46 Identities=26% Similarity=0.333 Sum_probs=31.5
Q ss_pred HHhcHHHHHhh--cceeeecCCCcccCCCC--------CChHHHHHHHHHHHHHhCCC
Q 024709 18 SLKNLNEIILA--SDGAMVARGDLGAQVPL--------EQVPSIQEKIVQLCRQLNKP 65 (264)
Q Consensus 18 ~~~n~~eI~~~--~Dgi~i~rgdL~~~~~~--------~~v~~~qk~ii~~~~~~gkp 65 (264)
.++..+.+++. +||||.|||-|- -|. +.......+-+..|.++|-+
T Consensus 214 ~~~d~~~~~~~tG~dGVM~arglL~--NPa~F~~~~~~~~~~~~~~~~l~~~~e~~g~ 269 (358)
T KOG2335|consen 214 SLEDVERCLKYTGADGVMSARGLLY--NPALFLTAGYGPTPWGCVEEYLDIAREFGGL 269 (358)
T ss_pred cHHHHHHHHHHhCCceEEecchhhc--CchhhccCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 45566777774 999999999883 221 34455566667777777744
No 451
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=27.21 E-value=5.4e+02 Score=24.32 Aligned_cols=122 Identities=11% Similarity=0.084 Sum_probs=71.7
Q ss_pred HHHHHHHHHhccccccccc-------cccCCCChHHHHHHHHHHHHHHHhhhhcccccccCCCCCCCCCCCCCchHHHHH
Q 024709 87 VADVSELVRQQADALMLSG-------ESAMGQFPDKALAVLRSVSLRIEKWCREGKQHATFEPPPISSSVSAGIPGEICN 159 (264)
Q Consensus 87 ~~dv~~~v~~g~d~~~ls~-------eta~G~yP~eav~~m~~i~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~aIA~ 159 (264)
..|+-.++..|+|.+-+.. +...|+-+-++++.+.+.++.+-+.-.+- .+...+ . .........
T Consensus 74 ~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v----~~~~ed---a--~r~~~~~l~ 144 (363)
T TIGR02090 74 KKDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIV----EFSAED---A--TRTDIDFLI 144 (363)
T ss_pred HHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEE----EEEEee---c--CCCCHHHHH
Confidence 3577888999999887732 23567778888888888777665421100 011111 1 112234555
Q ss_pred HHHHHHHhcCCcEEEEEcCCch-----HHHHHhhcCCC--CcEEEEcCCh---hhhhhc-ccccccEEE
Q 024709 160 GAAKIANKLKASALFVYTKTGQ-----MASLLSRSRPD--CPIFAFAPMS---SVRRRL-NLQWGLVPF 217 (264)
Q Consensus 160 aAv~lA~~l~A~aIVv~T~sG~-----tA~~iSr~RP~--~PIiAvT~~~---~~aR~L-~L~~GV~P~ 217 (264)
..++.+.+.+++.|.+..+.|. ..+++++.|.. +|+=.-++|. .++..| .+.-|+.-+
T Consensus 145 ~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~~~~~l~~H~Hnd~GlA~AN~laA~~aGa~~v 213 (363)
T TIGR02090 145 KVFKRAEEAGADRINIADTVGVLTPQKMEELIKKLKENVKLPISVHCHNDFGLATANSIAGVKAGAEQV 213 (363)
T ss_pred HHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhcccCceEEEEecCCCChHHHHHHHHHHCCCCEE
Confidence 5567778889998888888887 45666676655 4554444543 233333 344455433
No 452
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=27.06 E-value=4.1e+02 Score=23.68 Aligned_cols=81 Identities=7% Similarity=0.082 Sum_probs=47.9
Q ss_pred HHHHHHHhcCCcEEEEEcCCchHHHHHhhcCCCCcEEEEcCChhhhhhcccccccEEEEecCCCCHHHHHHHHHHHHHHc
Q 024709 160 GAAKIANKLKASALFVYTKTGQMASLLSRSRPDCPIFAFAPMSSVRRRLNLQWGLVPFCLNFSDDMESNLNQTFSLLKAR 239 (264)
Q Consensus 160 aAv~lA~~l~A~aIVv~T~sG~tA~~iSr~RP~~PIiAvT~~~~~aR~L~L~~GV~P~~~~~~~~~e~~i~~al~~~~~~ 239 (264)
.+.+.-.+-++++||+.+.......+..-.+.+.|++.+-...... .++-.+..+. .+....+.+++.++
T Consensus 47 ~~i~~l~~~~vDGiI~~s~~~~~~~l~~~~~~~iPvV~~~~~~~~~------~~~~~V~~D~----~~a~~~a~~~Li~~ 116 (279)
T PF00532_consen 47 EYIELLLQRRVDGIILASSENDDEELRRLIKSGIPVVLIDRYIDNP------EGVPSVYIDN----YEAGYEATEYLIKK 116 (279)
T ss_dssp HHHHHHHHTTSSEEEEESSSCTCHHHHHHHHTTSEEEEESS-SCTT------CTSCEEEEEH----HHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCEEEEecccCChHHHHHHHHcCCCEEEEEeccCCc------ccCCEEEEcc----hHHHHHHHHHHHhc
Confidence 6666777789999999988777333332223379999988764333 2222233321 23344677888888
Q ss_pred CCCCCCCEEEEEec
Q 024709 240 GLIKSGDLIIVVSD 253 (264)
Q Consensus 240 g~~~~GD~VVvvsG 253 (264)
|.=++ |.++.|
T Consensus 117 Gh~~~---I~~i~~ 127 (279)
T PF00532_consen 117 GHRRP---IAFIGG 127 (279)
T ss_dssp TCCST---EEEEEE
T ss_pred ccCCe---EEEEec
Confidence 76332 555555
No 453
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=27.05 E-value=1.7e+02 Score=25.66 Aligned_cols=45 Identities=13% Similarity=0.209 Sum_probs=33.1
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccc
Q 024709 46 EQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALML 103 (264)
Q Consensus 46 ~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~l 103 (264)
+....+....++.++++|+++++-|- -+ ..+...++..|+|+++-
T Consensus 214 ~~~~~~~~~~i~~~~~~G~~v~vwtv----------n~---~~~~~~~~~~Gvdgi~T 258 (263)
T cd08567 214 PYFTLVTKELVDEAHALGLKVVPWTV----------ND---PEDMARLIDLGVDGIIT 258 (263)
T ss_pred cchhhcCHHHHHHHHHCCCEEEEecC----------CC---HHHHHHHHHcCCCEEEc
Confidence 34445668999999999999999771 11 13456788899999874
No 454
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=27.04 E-value=1.3e+02 Score=26.65 Aligned_cols=50 Identities=12% Similarity=0.146 Sum_probs=37.0
Q ss_pred HHHHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHH--------hCCCEEEEh
Q 024709 16 IDSLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQ--------LNKPVIVAS 70 (264)
Q Consensus 16 ~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~--------~gkpv~~at 70 (264)
..++.++.+.++.+||++|+.-+--- -++.+.|..|.-+.+ .|||+.+.+
T Consensus 78 ~p~v~~l~~~v~~ADgvii~TPEYn~-----sipg~LKNaiDwls~~~~~~~~~~~Kpvaivg 135 (219)
T TIGR02690 78 HPKVRELRQLSEWSEGQVWCSPERHG-----AITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQ 135 (219)
T ss_pred CHHHHHHHHHHHhCCEEEEeCCcccc-----CcCHHHHHHHHhcccCcccccccCCCcEEEEE
Confidence 34888899999999999998655543 445677777776654 589999854
No 455
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=26.97 E-value=2.1e+02 Score=26.41 Aligned_cols=83 Identities=16% Similarity=0.185 Sum_probs=41.5
Q ss_pred ceEEEec-----cCH-HHHhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhC
Q 024709 7 IAVIAKI-----ESI-DSLKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEY 79 (264)
Q Consensus 7 ~~iiakI-----E~~-~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~ 79 (264)
+.|..|| ++. +.++-...+.+. +|+|-+....-. -+... +.....+-+..+..+.|++...
T Consensus 132 ~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~--~~~~~-~~~~~~i~~i~~~~~ipvi~nG--------- 199 (319)
T TIGR00737 132 IPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRA--QGYSG-EANWDIIARVKQAVRIPVIGNG--------- 199 (319)
T ss_pred CCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEccccc--ccCCC-chhHHHHHHHHHcCCCcEEEeC---------
Confidence 5688887 222 222222223333 788877422111 01110 1112233333344679999754
Q ss_pred CCCChHHHHHHHHHH-Hhcccccccc
Q 024709 80 PIPTRAEVADVSELV-RQQADALMLS 104 (264)
Q Consensus 80 ~~ptrae~~dv~~~v-~~g~d~~~ls 104 (264)
..-+. .|+..++ ..|+|+||++
T Consensus 200 gI~~~---~da~~~l~~~gad~Vmig 222 (319)
T TIGR00737 200 DIFSP---EDAKAMLETTGCDGVMIG 222 (319)
T ss_pred CCCCH---HHHHHHHHhhCCCEEEEC
Confidence 33333 3455666 4789999996
No 456
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=26.95 E-value=2e+02 Score=27.34 Aligned_cols=92 Identities=15% Similarity=0.082 Sum_probs=55.5
Q ss_pred hcHHHHHhh----cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHH
Q 024709 20 KNLNEIILA----SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVR 95 (264)
Q Consensus 20 ~n~~eI~~~----~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~ 95 (264)
.|++|+... +|.|.+||---+..=|... +.--+.+-..+.....|++.-.. =+.. ++.....
T Consensus 248 Hs~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~-~~Gle~l~~~~~~~~iPv~AiGG----------I~~~---ni~~l~~ 313 (347)
T PRK02615 248 TNPEEMAKAIAEGADYIGVGPVFPTPTKPGKA-PAGLEYLKYAAKEAPIPWFAIGG----------IDKS---NIPEVLQ 313 (347)
T ss_pred CCHHHHHHHHHcCCCEEEECCCcCCCCCCCCC-CCCHHHHHHHHHhCCCCEEEECC----------CCHH---HHHHHHH
Confidence 455555554 8999998755432222111 11122333334466789886332 1222 3455667
Q ss_pred hccccccccccccCCCChHHHHHHHHHHHH
Q 024709 96 QQADALMLSGESAMGQFPDKALAVLRSVSL 125 (264)
Q Consensus 96 ~g~d~~~ls~eta~G~yP~eav~~m~~i~~ 125 (264)
.|+|+|.+.+.-.....|.++++.+.+...
T Consensus 314 ~Ga~gVAvisaI~~a~dp~~~~~~l~~~l~ 343 (347)
T PRK02615 314 AGAKRVAVVRAIMGAEDPKQATQELLKQLS 343 (347)
T ss_pred cCCcEEEEeHHHhCCCCHHHHHHHHHHHHh
Confidence 899999999887777889998888776543
No 457
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=26.90 E-value=1.9e+02 Score=27.78 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=26.2
Q ss_pred HHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhcccccccccccc
Q 024709 59 CRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESA 108 (264)
Q Consensus 59 ~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta 108 (264)
++..+.|+++... .- --.||..|+..|+|+|++..-..
T Consensus 285 ~~~~~~~vi~dGG---------Ir---~g~Dv~KALaLGA~aV~iGr~~l 322 (361)
T cd04736 285 VAATYKPVLIDSG---------IR---RGSDIVKALALGANAVLLGRATL 322 (361)
T ss_pred HHHhCCeEEEeCC---------CC---CHHHHHHHHHcCCCEEEECHHHH
Confidence 3344688887332 22 23689999999999999875443
No 458
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.90 E-value=1.3e+02 Score=26.10 Aligned_cols=43 Identities=14% Similarity=0.253 Sum_probs=29.2
Q ss_pred HhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhh
Q 024709 19 LKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQ 71 (264)
Q Consensus 19 ~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq 71 (264)
.+.++.++.. +|||++.+.|- +. ....++.+.+.|+|+++...
T Consensus 45 ~~~i~~~~~~~~Dgiii~~~~~------~~----~~~~i~~~~~~~iPvV~~~~ 88 (282)
T cd06318 45 IADVEDLLTRGVNVLIINPVDP------EG----LVPAVAAAKAAGVPVVVVDS 88 (282)
T ss_pred HHHHHHHHHcCCCEEEEecCCc------cc----hHHHHHHHHHCCCCEEEecC
Confidence 3556777666 99999976442 11 12346788889999998543
No 459
>PF01274 Malate_synthase: Malate synthase; InterPro: IPR001465 Malate synthase (2.3.3.9 from EC) catalyses the aldol condensation of glyoxylate with acetyl-CoA to form malate as part of the second step of the glyoxylate bypass and an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. Malate synthase has a TIM beta/alpha-barrel fold [].; GO: 0004474 malate synthase activity, 0006097 glyoxylate cycle; PDB: 1Y8B_A 1P7T_A 2JQX_A 1D8C_A 3CUX_A 1N8W_A 2GQ3_A 1N8I_A 3CV2_A 3CUZ_A ....
Probab=26.83 E-value=1e+02 Score=31.12 Aligned_cols=97 Identities=19% Similarity=0.204 Sum_probs=57.1
Q ss_pred CcceEEEeccCHHHHhcHHHHHhh----c----------------------ceeeecCCCcccCCCCCChHHHHHHHHHH
Q 024709 5 VNIAVIAKIESIDSLKNLNEIILA----S----------------------DGAMVARGDLGAQVPLEQVPSIQEKIVQL 58 (264)
Q Consensus 5 ~~~~iiakIE~~~~~~n~~eI~~~----~----------------------Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~ 58 (264)
..+++-..|||..|.-|+|||+-. + |.|+-.|..++++. +=+..+.+..++.
T Consensus 237 gTIKatvLiEt~~Aafem~Eilyelr~h~~gLN~GrwDYifS~Ik~~~~~~~~vlPdR~~v~m~~--pfm~aY~~llv~t 314 (526)
T PF01274_consen 237 GTIKATVLIETIPAAFEMEEILYELRDHSVGLNCGRWDYIFSEIKTFRNRPDFVLPDRKQVTMTQ--PFMRAYEDLLVRT 314 (526)
T ss_dssp TSEEEEEEE-SHHHHTTHHHHHHHTTTTEEEEEE-HHHHHHHHHHHTCCGCCBB---GGGGGCGS--HHHHHHHHHHHHH
T ss_pred CceEEEEeeehhHHHhhHHHHHHHHHhheeeeecCchhhhHHHHHHhhhCCCccccccccccccC--HHHHHHHHHHHHH
Confidence 458899999999999999999977 2 33444555544443 4577889999999
Q ss_pred HHHhCCCEEE--Ehhhhhh--hhhCCCCChHHH-HHHHHHHHhcccccccc
Q 024709 59 CRQLNKPVIV--ASQLLES--MIEYPIPTRAEV-ADVSELVRQQADALMLS 104 (264)
Q Consensus 59 ~~~~gkpv~~--atq~leS--M~~~~~ptrae~-~dv~~~v~~g~d~~~ls 104 (264)
|++.|-..+. +.|+--. |..++ ...+++ .|=-.-+.+|+|+-+..
T Consensus 315 ch~Rga~a~gGmaa~ip~~~d~~~~~-~a~~~v~~dK~rE~~~G~dg~WVa 364 (526)
T PF01274_consen 315 CHRRGAHAMGGMAAFIPIGKDPWANP-DAMAKVRADKEREAKAGFDGAWVA 364 (526)
T ss_dssp HHHTT-HHHTTCTTTSEEEEEEHHBT-TCHHHHHHHTHHHHHTT-SEEEES
T ss_pred HhhcCCccccCCccccCCCCChhhhH-HHHHHHHHHHHHHHhcCCCccccc
Confidence 9999964421 1111100 11111 111111 33345678999998885
No 460
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=26.82 E-value=1.1e+02 Score=25.80 Aligned_cols=52 Identities=23% Similarity=0.171 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCC
Q 024709 53 EKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQ 111 (264)
Q Consensus 53 k~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~ 111 (264)
.+.++.+++.|.+++++|. ++........+-...+..-+|.++.|.|...+|
T Consensus 90 ~e~L~~l~~~g~~~~i~Sn-------~~~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~K 141 (199)
T PRK09456 90 IAIMHKLREQGHRVVVLSN-------TNRLHTTFWPEEYPEVRAAADHIYLSQDLGMRK 141 (199)
T ss_pred HHHHHHHHhCCCcEEEEcC-------CchhhHHHHHhhchhHHHhcCEEEEecccCCCC
Confidence 5677888888999988773 222221111111123344578888888876664
No 461
>PRK08116 hypothetical protein; Validated
Probab=26.78 E-value=1.5e+02 Score=26.87 Aligned_cols=42 Identities=24% Similarity=0.255 Sum_probs=29.8
Q ss_pred hcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhh
Q 024709 28 ASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQ 71 (264)
Q Consensus 28 ~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq 71 (264)
-+|-++| -|||.+-.-+.....--.|+..-...|||+|++|+
T Consensus 178 ~~dlLvi--DDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN 219 (268)
T PRK08116 178 NADLLIL--DDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTN 219 (268)
T ss_pred CCCEEEE--ecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 3788888 58887765444444444677777778999999885
No 462
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=26.72 E-value=2e+02 Score=28.62 Aligned_cols=71 Identities=13% Similarity=0.205 Sum_probs=53.5
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHH---HHHHHH-HHHhccccccccccccCCCChHHHHHHHH
Q 024709 46 EQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAE---VADVSE-LVRQQADALMLSGESAMGQFPDKALAVLR 121 (264)
Q Consensus 46 ~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae---~~dv~~-~v~~g~d~~~ls~eta~G~yP~eav~~m~ 121 (264)
+++....++.++.|+.+|.-|.+. ....+|++ +-+++. +...|+|.+.|. +|.=+..|.+.-..++
T Consensus 113 ~e~l~~~~~~v~~a~~~g~~v~f~---------~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~-DTvG~~~P~~~~~~i~ 182 (494)
T TIGR00973 113 DEVLERAVGMVKYAKNFTDDVEFS---------CEDAGRTEIPFLARIVEAAINAGATTINIP-DTVGYALPAEYGNLIK 182 (494)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEE---------cCCCCCCCHHHHHHHHHHHHHcCCCEEEeC-CCCCCCCHHHHHHHHH
Confidence 666777789999999999988774 33555555 445545 456699999997 9999999988888877
Q ss_pred HHHHH
Q 024709 122 SVSLR 126 (264)
Q Consensus 122 ~i~~~ 126 (264)
.+.+.
T Consensus 183 ~l~~~ 187 (494)
T TIGR00973 183 GLREN 187 (494)
T ss_pred HHHHh
Confidence 77543
No 463
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=26.58 E-value=4.5e+02 Score=23.60 Aligned_cols=88 Identities=18% Similarity=0.255 Sum_probs=50.0
Q ss_pred HHHhcH-HHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHH
Q 024709 17 DSLKNL-NEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELV 94 (264)
Q Consensus 17 ~~~~n~-~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v 94 (264)
-|++++ ++..+. +||+++- || |.+ --.+.+++|+++|...+.+ -+|..+...+..+...
T Consensus 102 ~G~e~f~~~~~~aGvdgviip--Dl----p~e----e~~~~~~~~~~~gl~~i~l--------v~P~T~~eri~~i~~~- 162 (256)
T TIGR00262 102 KGVEEFYAKCKEVGVDGVLVA--DL----PLE----ESGDLVEAAKKHGVKPIFL--------VAPNADDERLKQIAEK- 162 (256)
T ss_pred hhHHHHHHHHHHcCCCEEEEC--CC----ChH----HHHHHHHHHHHCCCcEEEE--------ECCCCCHHHHHHHHHh-
Confidence 366764 555555 8999995 44 433 3567999999999876642 3465554444333332
Q ss_pred Hhcccccccc-ccccC-CCChHHHHHHHHHH
Q 024709 95 RQQADALMLS-GESAM-GQFPDKALAVLRSV 123 (264)
Q Consensus 95 ~~g~d~~~ls-~eta~-G~yP~eav~~m~~i 123 (264)
.+|+..+|-. |=|.. ..|+-+....++++
T Consensus 163 ~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~l 193 (256)
T TIGR00262 163 SQGFVYLVSRAGVTGARNRAASALNELVKRL 193 (256)
T ss_pred CCCCEEEEECCCCCCCcccCChhHHHHHHHH
Confidence 3555544432 22221 23666655555554
No 464
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=26.45 E-value=4.5e+02 Score=24.80 Aligned_cols=69 Identities=19% Similarity=0.201 Sum_probs=43.5
Q ss_pred HHHHhcHHHHHhh---cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhC-CCEEEEhhhhhhhhhCCCCChHHHHHHH
Q 024709 16 IDSLKNLNEIILA---SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLN-KPVIVASQLLESMIEYPIPTRAEVADVS 91 (264)
Q Consensus 16 ~~~~~n~~eI~~~---~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~g-kpv~~atq~leSM~~~~~ptrae~~dv~ 91 (264)
.+..+..+++++. +|.|.|.--+ .....+|..|-+...+.. .|++.-+ .-|+. ++.
T Consensus 96 ~~~~~~~~~Lv~ag~~~d~i~iD~a~-------gh~~~~~e~I~~ir~~~p~~~vi~g~----------V~t~e---~a~ 155 (326)
T PRK05458 96 DDEYDFVDQLAAEGLTPEYITIDIAH-------GHSDSVINMIQHIKKHLPETFVIAGN----------VGTPE---AVR 155 (326)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCC-------CchHHHHHHHHHHHhhCCCCeEEEEe----------cCCHH---HHH
Confidence 5677888888887 4988884333 444555555444444554 6666522 22444 446
Q ss_pred HHHHhcccccccc
Q 024709 92 ELVRQQADALMLS 104 (264)
Q Consensus 92 ~~v~~g~d~~~ls 104 (264)
++...|+|++..+
T Consensus 156 ~l~~aGad~i~vg 168 (326)
T PRK05458 156 ELENAGADATKVG 168 (326)
T ss_pred HHHHcCcCEEEEC
Confidence 7777999998865
No 465
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=26.36 E-value=1.6e+02 Score=27.59 Aligned_cols=48 Identities=19% Similarity=0.202 Sum_probs=31.3
Q ss_pred hcHHHHHhh--cceeeecCCCcccC----CCCCCh----HHHHHHHHHHHHHh-CCCEEE
Q 024709 20 KNLNEIILA--SDGAMVARGDLGAQ----VPLEQV----PSIQEKIVQLCRQL-NKPVIV 68 (264)
Q Consensus 20 ~n~~eI~~~--~Dgi~i~rgdL~~~----~~~~~v----~~~qk~ii~~~~~~-gkpv~~ 68 (264)
+.++..++. +|+|.+. -|++.. ++.+.. .-..|+|++..++. |+|++.
T Consensus 159 ~y~~~qiea~Gad~I~i~-Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~g~piil 217 (321)
T cd03309 159 KLYERRIKHLEPDLLVYH-DDLGSQKGSFISPATFREFILPRMQRIFDFLRSNTSALIVH 217 (321)
T ss_pred HHHHHHHHHhCCCEEEEe-CCCccccCCccCHHHHHHHHHHHHHHHHHHHHhccCCceEE
Confidence 334445544 8999985 334443 554333 34568999999988 788886
No 466
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=26.32 E-value=2.2e+02 Score=25.92 Aligned_cols=56 Identities=14% Similarity=0.190 Sum_probs=42.9
Q ss_pred HhCCCEEEEhhhhhhhhhCCCC-----ChHHH----HHHHHHHHhccccccccccccCCCChHHHHHHHHHHH
Q 024709 61 QLNKPVIVASQLLESMIEYPIP-----TRAEV----ADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVS 124 (264)
Q Consensus 61 ~~gkpv~~atq~leSM~~~~~p-----trae~----~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~ 124 (264)
....|+.+ |+. |++ +..|+ .|+..+...|+|++.+..=|..|.--.++.+.+-+.+
T Consensus 49 ~~~ipv~v-------MIR-PR~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a 113 (248)
T PRK11572 49 RVTIPVHP-------IIR-PRGGDFCYSDGEFAAMLEDIATVRELGFPGLVTGVLDVDGHVDMPRMRKIMAAA 113 (248)
T ss_pred hcCCCeEE-------EEe-cCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHh
Confidence 35899998 553 432 34453 7999999999999999999999998888777766544
No 467
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=26.32 E-value=5e+02 Score=23.65 Aligned_cols=115 Identities=11% Similarity=0.026 Sum_probs=70.5
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCC-CCChHHHHHHHH-HHHhccccccccccccCCCChHHHHHHHHHH
Q 024709 46 EQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYP-IPTRAEVADVSE-LVRQQADALMLSGESAMGQFPDKALAVLRSV 123 (264)
Q Consensus 46 ~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~-~ptrae~~dv~~-~v~~g~d~~~ls~eta~G~yP~eav~~m~~i 123 (264)
++...-.+++++.|+.+|..+.+.-.. ..+| +-+...+-+++. +...|+|.+.|. +|.=.-.|.+.-+.++.+
T Consensus 111 ~e~l~~~~~~i~~a~~~G~~v~~~~~d----~~~~~r~~~~~~~~~~~~~~~~G~~~i~l~-DT~G~~~P~~v~~l~~~l 185 (280)
T cd07945 111 EEHFADIREVIEYAIKNGIEVNIYLED----WSNGMRDSPDYVFQLVDFLSDLPIKRIMLP-DTLGILSPFETYTYISDM 185 (280)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEEEe----CCCCCcCCHHHHHHHHHHHHHcCCCEEEec-CCCCCCCHHHHHHHHHHH
Confidence 666667788999999999987774321 1223 223344555554 556799999997 888889999988888776
Q ss_pred HHHHHhhhhcccccccCCCCCCCCCCCCCchHHHHHHHHHHHHhcCCcEEEEEcCCch
Q 024709 124 SLRIEKWCREGKQHATFEPPPISSSVSAGIPGEICNGAAKIANKLKASALFVYTKTGQ 181 (264)
Q Consensus 124 ~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~aIA~aAv~lA~~l~A~aIVv~T~sG~ 181 (264)
-...... .. .++.+ ++ .-+|.+-...|-..+++ .|=-|-.|-
T Consensus 186 ~~~~~~~-----~i-~~H~H-------nd--~Gla~AN~laA~~aGa~-~vd~s~~Gl 227 (280)
T cd07945 186 VKRYPNL-----HF-DFHAH-------ND--YDLAVANVLAAVKAGIK-GLHTTVNGL 227 (280)
T ss_pred HhhCCCC-----eE-EEEeC-------CC--CCHHHHHHHHHHHhCCC-EEEEecccc
Confidence 4322110 00 01111 11 23555666677888887 455555443
No 468
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=26.25 E-value=1.3e+02 Score=27.30 Aligned_cols=89 Identities=21% Similarity=0.337 Sum_probs=52.9
Q ss_pred cceEEEec--cCHHHHhcHHHHHhh--cceeeecCC-----CcccCCCCCChHHHHHHHHHHHHHh-CCCEEEEhhhhhh
Q 024709 6 NIAVIAKI--ESIDSLKNLNEIILA--SDGAMVARG-----DLGAQVPLEQVPSIQEKIVQLCRQL-NKPVIVASQLLES 75 (264)
Q Consensus 6 ~~~iiakI--E~~~~~~n~~eI~~~--~Dgi~i~rg-----dL~~~~~~~~v~~~qk~ii~~~~~~-gkpv~~atq~leS 75 (264)
...+++.| .+.+...+.-+.++. .|+|=+.=+ ..|.+++ .-+..-.++++.+++. ++|+.+=
T Consensus 89 ~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~--~~~~~~~eiv~~vr~~~~~Pv~vK------ 160 (296)
T cd04740 89 GTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG--TDPEAVAEIVKAVKKATDVPVIVK------ 160 (296)
T ss_pred CCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc--CCHHHHHHHHHHHHhccCCCEEEE------
Confidence 35566666 445555444444433 688866311 0011121 2246667888888887 8999972
Q ss_pred hhhCCCCChHHHHHHHH-HHHhcccccccccc
Q 024709 76 MIEYPIPTRAEVADVSE-LVRQQADALMLSGE 106 (264)
Q Consensus 76 M~~~~~ptrae~~dv~~-~v~~g~d~~~ls~e 106 (264)
..|+..|..+++. +...|+|++.+++=
T Consensus 161 ----l~~~~~~~~~~a~~~~~~G~d~i~~~nt 188 (296)
T cd04740 161 ----LTPNVTDIVEIARAAEEAGADGLTLINT 188 (296)
T ss_pred ----eCCCchhHHHHHHHHHHcCCCEEEEECC
Confidence 2455556767666 55689999988643
No 469
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=26.21 E-value=2.3e+02 Score=26.03 Aligned_cols=50 Identities=18% Similarity=0.237 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhcccccccccccc
Q 024709 48 VPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESA 108 (264)
Q Consensus 48 v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta 108 (264)
...+...+...++++..||.+ ...+. . ....+..++..|++.||+-+-+.
T Consensus 59 ~~~~~~~~~~~a~~~~vpv~l-------HlDH~-~---~~e~i~~Al~~G~tsVm~d~s~~ 108 (281)
T PRK06806 59 LHLIGPLMVAAAKQAKVPVAV-------HFDHG-M---TFEKIKEALEIGFTSVMFDGSHL 108 (281)
T ss_pred hHHHHHHHHHHHHHCCCCEEE-------ECCCC-C---CHHHHHHHHHcCCCEEEEcCCCC
Confidence 344556667788889999997 11221 2 24567889999999999975544
No 470
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=26.20 E-value=1.4e+02 Score=24.92 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=29.8
Q ss_pred HhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEE
Q 024709 26 ILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIV 68 (264)
Q Consensus 26 ~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~ 68 (264)
+.-.||+++.-|-..............+.+++.|.+.++|+.-
T Consensus 44 ~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilg 86 (188)
T cd01741 44 LDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLG 86 (188)
T ss_pred cccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEE
Confidence 3458999999876655222223334467889999999999875
No 471
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=26.20 E-value=1.3e+02 Score=27.85 Aligned_cols=41 Identities=12% Similarity=0.092 Sum_probs=30.2
Q ss_pred HhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEE
Q 024709 19 LKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVA 69 (264)
Q Consensus 19 ~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~a 69 (264)
++.++.+++- +|||++.+.| +......++++++.|.||++.
T Consensus 70 ~~~i~~li~~~vdgIiv~~~d----------~~al~~~l~~a~~~gIpVV~~ 111 (336)
T PRK15408 70 VQLINNFVNQGYNAIIVSAVS----------PDGLCPALKRAMQRGVKVLTW 111 (336)
T ss_pred HHHHHHHHHcCCCEEEEecCC----------HHHHHHHHHHHHHCCCeEEEe
Confidence 4556776666 9999997543 334456788899999999984
No 472
>PRK12608 transcription termination factor Rho; Provisional
Probab=26.18 E-value=1.3e+02 Score=29.19 Aligned_cols=64 Identities=17% Similarity=0.188 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHH
Q 024709 48 VPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRI 127 (264)
Q Consensus 48 v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~ 127 (264)
+...-..+.+..+..||.|++ ++||+.. - +.| .-.....+||+..|-||--+...+.++..+|
T Consensus 204 v~~~~~~~Ae~f~~~GkdVVL---vlDsltr------~-----A~A---~rei~~~~G~~~s~G~~~s~~~~~~rl~~~A 266 (380)
T PRK12608 204 VAELVLERAKRLVEQGKDVVI---LLDSLTR------L-----ARA---YNNEVESSGRTLSGGVDARALQRPKRLFGAA 266 (380)
T ss_pred HHHHHHHHHHHHHHcCCCEEE---EEeCcHH------H-----HHH---HHhhhcccCCCCCCCcChHHHhhhHHHHHhc
Confidence 333445777888889999998 6666532 1 222 2333466999999999999999999987765
Q ss_pred H
Q 024709 128 E 128 (264)
Q Consensus 128 E 128 (264)
=
T Consensus 267 ~ 267 (380)
T PRK12608 267 R 267 (380)
T ss_pred C
Confidence 3
No 473
>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function.
Probab=26.16 E-value=95 Score=29.20 Aligned_cols=50 Identities=12% Similarity=0.084 Sum_probs=38.4
Q ss_pred hcCCcEEEEEcCCchHHHHHhh----cCCCCcEEEEcCChhh--hhhcccccccEE
Q 024709 167 KLKASALFVYTKTGQMASLLSR----SRPDCPIFAFAPMSSV--RRRLNLQWGLVP 216 (264)
Q Consensus 167 ~l~A~aIVv~T~sG~tA~~iSr----~RP~~PIiAvT~~~~~--aR~L~L~~GV~P 216 (264)
.++++-||+.+-|.+||.-+|. -++...+|++|..... .+.|.+|--|..
T Consensus 133 ~~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~vglTS~~N~~Fve~lg~Yd~V~~ 188 (314)
T PF11017_consen 133 FFGAAQVVLSSASSKTAIGLAYCLKKQRGPPKVVGLTSARNVAFVESLGCYDEVLT 188 (314)
T ss_pred cCCccEEEEeccchHHHHHHHHHhhccCCCceEEEEecCcchhhhhccCCceEEee
Confidence 4688899999999999998775 4888999999976554 555655555544
No 474
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=26.05 E-value=2.9e+02 Score=23.69 Aligned_cols=82 Identities=21% Similarity=0.237 Sum_probs=47.9
Q ss_pred cHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccc
Q 024709 21 NLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQAD 99 (264)
Q Consensus 21 n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d 99 (264)
.++++.+. .|.+.+..-|.... + .++ ...+++.+.+. .++|++.... .-+. .|+..+...|+|
T Consensus 133 e~~~~~~~g~~~i~~t~~~~~~~-~-~~~-~~~~~l~~~~~-~~~pvia~gG---------I~s~---edi~~~~~~Ga~ 196 (217)
T cd00331 133 ELERALALGAKIIGINNRDLKTF-E-VDL-NTTERLAPLIP-KDVILVSESG---------ISTP---EDVKRLAEAGAD 196 (217)
T ss_pred HHHHHHHcCCCEEEEeCCCcccc-C-cCH-HHHHHHHHhCC-CCCEEEEEcC---------CCCH---HHHHHHHHcCCC
Confidence 34444444 78888886554322 2 333 22233322211 3678886442 2233 355667778999
Q ss_pred cccccccccCCCChHHHHH
Q 024709 100 ALMLSGESAMGQFPDKALA 118 (264)
Q Consensus 100 ~~~ls~eta~G~yP~eav~ 118 (264)
++.+..--.....|.++++
T Consensus 197 gvivGsai~~~~~p~~~~~ 215 (217)
T cd00331 197 AVLIGESLMRAPDPGAALR 215 (217)
T ss_pred EEEECHHHcCCCCHHHHHH
Confidence 9999887777777877765
No 475
>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.
Probab=25.90 E-value=43 Score=32.19 Aligned_cols=56 Identities=32% Similarity=0.548 Sum_probs=32.6
Q ss_pred HHHHHHHHHhCCCEEE--EhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCC
Q 024709 53 EKIVQLCRQLNKPVIV--ASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQ 111 (264)
Q Consensus 53 k~ii~~~~~~gkpv~~--atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~ 111 (264)
+++++.++++|.|+++ +...|.-+.....|. -.++..++..|+|.|..||+=..|-
T Consensus 160 ~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~---Ep~v~~~~~~GaDlV~fSGdKlLGG 217 (367)
T PF03841_consen 160 EELAELAKEHGLPVIVDLGSGLLVDLSPYGLPD---EPTVQEYLAAGADLVTFSGDKLLGG 217 (367)
T ss_dssp -HHHHHHHHHT--EEEE-TTHHHHHHHTT-------------CCCCT-SEEEEETTSSSSS
T ss_pred HHHHHHHhhcCCcEEEECCCCCCcCcccccCcc---ccHHHHHhhcCCCEEEEECCCcCCC
Confidence 6789999999999997 233344343333332 2356788999999999999988886
No 476
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=25.82 E-value=2.2e+02 Score=26.98 Aligned_cols=74 Identities=14% Similarity=0.105 Sum_probs=52.2
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHH-HHHhccccccccccccCCCChHHHHHHHHHHH
Q 024709 46 EQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSE-LVRQQADALMLSGESAMGQFPDKALAVLRSVS 124 (264)
Q Consensus 46 ~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~-~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~ 124 (264)
++...-.++.++.++++|..+-+.. ...++-+...+-+++. +...|+|.+.|. +|.=...|.+.-+.++.+.
T Consensus 109 ~e~l~~~~~~i~~ak~~g~~v~~~~------ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~-DT~G~~~P~~v~~lv~~l~ 181 (365)
T TIGR02660 109 AWVLERLARLVSFARDRGLFVSVGG------EDASRADPDFLVELAEVAAEAGADRFRFA-DTVGILDPFSTYELVRALR 181 (365)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEee------cCCCCCCHHHHHHHHHHHHHcCcCEEEEc-ccCCCCCHHHHHHHHHHHH
Confidence 4444555688999999998877632 1233444444555554 455799999987 8999999999888888876
Q ss_pred HH
Q 024709 125 LR 126 (264)
Q Consensus 125 ~~ 126 (264)
.+
T Consensus 182 ~~ 183 (365)
T TIGR02660 182 QA 183 (365)
T ss_pred Hh
Confidence 54
No 477
>smart00475 53EXOc 5'-3' exonuclease.
Probab=25.70 E-value=3.9e+02 Score=24.14 Aligned_cols=101 Identities=15% Similarity=0.120 Sum_probs=53.7
Q ss_pred CchHHHHHHHHHHHHhcCC-cEEEEEcCCchHHH--HHhhcC---CCCcEEEEcCChhhhhhcccccccEEEEecCCCCH
Q 024709 152 GIPGEICNGAAKIANKLKA-SALFVYTKTGQMAS--LLSRSR---PDCPIFAFAPMSSVRRRLNLQWGLVPFCLNFSDDM 225 (264)
Q Consensus 152 ~~~~aIA~aAv~lA~~l~A-~aIVv~T~sG~tA~--~iSr~R---P~~PIiAvT~~~~~aR~L~L~~GV~P~~~~~~~~~ 225 (264)
+....+......+-++.+. ..+++|...|.+-| +...|+ +..|= .+..-...++.+.-.-|+ |.+....-+.
T Consensus 31 ~a~~g~~~~l~~l~~~~~p~~~~~~fD~~~~~~R~~l~p~YKa~R~~~pe-~L~~q~~~~~~~l~~~gi-~~i~~~g~EA 108 (259)
T smart00475 31 NAVYGFLRMLLKLIKEEKPTYVAVVFDAKGKTFRHELYPEYKANRPKTPD-ELLEQIPLIKELLDALGI-PVLEVEGYEA 108 (259)
T ss_pred cHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhHHHHhCCCCCCH-HHHHHHHHHHHHHHHCCC-CEEeeCCcCH
Confidence 4455566666677666644 57889987666544 334443 32221 011111223333334566 4444334566
Q ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEEecCCceEE
Q 024709 226 ESNLNQTFSLLKARGLIKSGDLIIVVSDMLQCIQ 259 (264)
Q Consensus 226 e~~i~~al~~~~~~g~~~~GD~VVvvsG~~~~i~ 259 (264)
|+.+....+.+.. .|..++++|++.|.++
T Consensus 109 DD~iatla~~~~~-----~g~~~~IvS~DkDl~q 137 (259)
T smart00475 109 DDVIATLAKKAEA-----EGYEVRIVSGDKDLLQ 137 (259)
T ss_pred HHHHHHHHHHHHh-----CCCeEEEEeCCCcHhh
Confidence 7776654443333 4678899998655443
No 478
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=25.69 E-value=1.8e+02 Score=22.70 Aligned_cols=54 Identities=20% Similarity=0.230 Sum_probs=38.0
Q ss_pred HhcHHHHHh--hcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHH
Q 024709 19 LKNLNEIIL--ASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAE 86 (264)
Q Consensus 19 ~~n~~eI~~--~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae 86 (264)
+.++++.+. -.|.|++| +.+...++++-+.|...|+||.+ ++.....|.|-.+|
T Consensus 39 ~~e~~~~~~~~~~DvIll~----------PQi~~~~~~i~~~~~~~~ipv~~----I~~~~Y~~~~~~~~ 94 (104)
T PRK09590 39 ATEGEKAIAAAEYDLYLVS----------PQTKMYFKQFEEAGAKVGKPVVQ----IPPQAYIPIPMGIE 94 (104)
T ss_pred HHHHHHhhccCCCCEEEEC----------hHHHHHHHHHHHHhhhcCCCEEE----eCHHHcCCCccCHH
Confidence 334444433 26777776 78999999999999999999997 34444555555554
No 479
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=25.67 E-value=80 Score=26.90 Aligned_cols=39 Identities=15% Similarity=0.257 Sum_probs=31.4
Q ss_pred eeeecCCCcccCCCCCChHHHHHHHHHHHHHh--CCCEEEE
Q 024709 31 GAMVARGDLGAQVPLEQVPSIQEKIVQLCRQL--NKPVIVA 69 (264)
Q Consensus 31 gi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~--gkpv~~a 69 (264)
-|++|-.|++...+.+++..-.+.|++++++. +.++++.
T Consensus 94 vI~~G~ND~~~~~~~~~~~~~l~~ii~~l~~~~P~~~Iil~ 134 (214)
T cd01820 94 VLLIGTNNIGHTTTAEEIAEGILAIVEEIREKLPNAKILLL 134 (214)
T ss_pred EEEecccccCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 46778889987777888888899999999987 4566654
No 480
>PRK06683 hypothetical protein; Provisional
Probab=25.47 E-value=1.2e+02 Score=22.54 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhCCCEEE
Q 024709 50 SIQEKIVQLCRQLNKPVIV 68 (264)
Q Consensus 50 ~~qk~ii~~~~~~gkpv~~ 68 (264)
...+.+...|+.++.|+..
T Consensus 40 ~~~~~i~~~~~~~~Vpv~~ 58 (82)
T PRK06683 40 RLTHVIIRTALQHNIPITK 58 (82)
T ss_pred HHHHHHHHHHHhcCCCEEE
Confidence 4678899999999999987
No 481
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=25.43 E-value=1e+02 Score=25.95 Aligned_cols=85 Identities=12% Similarity=0.051 Sum_probs=52.7
Q ss_pred cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCC-----ChHHHHHHHHHHHhccccccc
Q 024709 29 SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIP-----TRAEVADVSELVRQQADALML 103 (264)
Q Consensus 29 ~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~p-----trae~~dv~~~v~~g~d~~~l 103 (264)
.|.+||-=++ |...+-.--+.=++.|+++|+|+++- +-..| ..+|+....+.+..+-..++|
T Consensus 23 ~~fviikate-----G~~~~D~~f~~n~~~a~~aGl~vG~Y--------hf~~~~~~~~a~~eA~~f~~~~~~~~~~~~l 89 (177)
T cd06523 23 LDLVIIRVQY-----GSNYVDLKYKNNIKEFKKRGIPFGVY--------AFARGTSTADAKAEARDFYNRANKKPTFYVL 89 (177)
T ss_pred CCEEEEEEeC-----CCcccCHHHHHHHHHHHHcCCCeEEE--------EEeccCCHHHHHHHHHHHHHHhcCCCceEEE
Confidence 6778876544 22234444556678999999999963 11233 234455555555444556788
Q ss_pred cccccCCCChHHHHHHHHHHHHHHHh
Q 024709 104 SGESAMGQFPDKALAVLRSVSLRIEK 129 (264)
Q Consensus 104 s~eta~G~yP~eav~~m~~i~~~~E~ 129 (264)
.-|...+ -+....+...+.+.|+
T Consensus 90 D~E~~~~---~~~~~~~~~f~~~v~~ 112 (177)
T cd06523 90 DVEVTSM---SDMNAGVQAFISELRR 112 (177)
T ss_pred eeccCCc---chHHHHHHHHHHHHHH
Confidence 8898654 3445666777777776
No 482
>PRK08328 hypothetical protein; Provisional
Probab=25.43 E-value=2.1e+02 Score=25.23 Aligned_cols=55 Identities=11% Similarity=0.146 Sum_probs=34.6
Q ss_pred CCcceEEEeccCHHHHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEE
Q 024709 4 LVNIAVIAKIESIDSLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVA 69 (264)
Q Consensus 4 ~~~~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~a 69 (264)
|.++.|-+--+.. .-+|++++++-.|.|+-+-.+ +.....+-+.|+++|+|++.+
T Consensus 95 np~v~v~~~~~~~-~~~~~~~~l~~~D~Vid~~d~----------~~~r~~l~~~~~~~~ip~i~g 149 (231)
T PRK08328 95 NSDIKIETFVGRL-SEENIDEVLKGVDVIVDCLDN----------FETRYLLDDYAHKKGIPLVHG 149 (231)
T ss_pred CCCCEEEEEeccC-CHHHHHHHHhcCCEEEECCCC----------HHHHHHHHHHHHHcCCCEEEE
Confidence 3344444422222 236778888878877776332 234556777899999999874
No 483
>PRK00915 2-isopropylmalate synthase; Validated
Probab=25.38 E-value=2.3e+02 Score=28.34 Aligned_cols=85 Identities=15% Similarity=0.251 Sum_probs=58.7
Q ss_pred eeecCCCccc----CCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHH---HHHHHHH-HHhccccccc
Q 024709 32 AMVARGDLGA----QVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAE---VADVSEL-VRQQADALML 103 (264)
Q Consensus 32 i~i~rgdL~~----~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae---~~dv~~~-v~~g~d~~~l 103 (264)
++++-.|+-. ....+++....++.++.|+++|.-|.+.. ..-+|++ +.+++.+ ...|+|.+.|
T Consensus 98 i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~---------ed~~r~d~~~l~~~~~~~~~~Ga~~i~l 168 (513)
T PRK00915 98 TFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSA---------EDATRTDLDFLCRVVEAAIDAGATTINI 168 (513)
T ss_pred EEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEe---------CCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4555555522 22346666777899999999999887633 2333443 4555554 4569999999
Q ss_pred cccccCCCChHHHHHHHHHHHHH
Q 024709 104 SGESAMGQFPDKALAVLRSVSLR 126 (264)
Q Consensus 104 s~eta~G~yP~eav~~m~~i~~~ 126 (264)
. +|.=+..|.+.-..++.+.+.
T Consensus 169 ~-DTvG~~~P~~~~~~i~~l~~~ 190 (513)
T PRK00915 169 P-DTVGYTTPEEFGELIKTLRER 190 (513)
T ss_pred c-cCCCCCCHHHHHHHHHHHHHh
Confidence 7 999999999988888777543
No 484
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=25.34 E-value=1.4e+02 Score=27.54 Aligned_cols=66 Identities=8% Similarity=0.095 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHH
Q 024709 48 VPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRI 127 (264)
Q Consensus 48 v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~ 127 (264)
.|..-...++.|.++|+|+++.| .--+..+...+..+ .+. .++.+ .+|-+-++ .|-++.+.+
T Consensus 78 ~P~~~~~n~~~~~~~gv~~ViGT---------TG~~~~~~~~l~~~--~~i-~~l~a-----pNfSiGv~-ll~~~~~~a 139 (275)
T TIGR02130 78 HPSAVNDNAAFYGKHGIPFVMGT---------TGGDREALAKLVAD--AKH-PAVIA-----PNMAKQIV-AFLAAIEFL 139 (275)
T ss_pred ChHHHHHHHHHHHHCCCCEEEcC---------CCCCHHHHHHHHHh--cCC-CEEEE-----CcccHHHH-HHHHHHHHH
Confidence 46677778999999999999988 34555666665443 233 44554 35555555 455666666
Q ss_pred Hhhh
Q 024709 128 EKWC 131 (264)
Q Consensus 128 E~~~ 131 (264)
-+++
T Consensus 140 A~~~ 143 (275)
T TIGR02130 140 AEEF 143 (275)
T ss_pred HHhh
Confidence 6655
No 485
>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]
Probab=25.26 E-value=1.1e+02 Score=29.14 Aligned_cols=48 Identities=8% Similarity=0.158 Sum_probs=33.9
Q ss_pred cEEEEEcCCchHHHHHhhc----CCCCcEEEEcCChhhhhhcccccccEEEEe
Q 024709 171 SALFVYTKTGQMASLLSRS----RPDCPIFAFAPMSSVRRRLNLQWGLVPFCL 219 (264)
Q Consensus 171 ~aIVv~T~sG~tA~~iSr~----RP~~PIiAvT~~~~~aR~L~L~~GV~P~~~ 219 (264)
.++|++++||.|...++.. .+.+.+|++|..+. ..--...--++|+..
T Consensus 89 ~lvi~~S~SG~TpE~vaa~~~a~~~ga~~i~lT~~~d-SpLa~~ad~~i~~~~ 140 (340)
T COG2222 89 SLVIAFSQSGNTPESVAAAELAKEGGALTIALTNEED-SPLARAADYVIPYLA 140 (340)
T ss_pred eEEEEEeCCCCCHHHHHHHHHhccCCCeEEEEecCCC-ChhhhcCCeeeeccC
Confidence 4899999999998877643 47799999998877 332334444555544
No 486
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=25.20 E-value=3.3e+02 Score=24.32 Aligned_cols=81 Identities=20% Similarity=0.218 Sum_probs=45.2
Q ss_pred cceEEEeccCH----HHHhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHh-C-CCEEEEhhhhhhhhh
Q 024709 6 NIAVIAKIESI----DSLKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQL-N-KPVIVASQLLESMIE 78 (264)
Q Consensus 6 ~~~iiakIE~~----~~~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~-g-kpv~~atq~leSM~~ 78 (264)
.+.|.+||=-. +.++-...+.+. +|+|.|..+.- + -+.+.-+.|+..+++ + +|+|- +
T Consensus 134 ~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~~~~----g---~~~a~~~~I~~i~~~~~~ipIIg---------N 197 (231)
T TIGR00736 134 NKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDAMYP----G---KPYADMDLLKILSEEFNDKIIIG---------N 197 (231)
T ss_pred CCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEeeCCC----C---CchhhHHHHHHHHHhcCCCcEEE---------E
Confidence 45677787531 222222333333 89999853221 1 122344555555554 3 88886 3
Q ss_pred CCCCChHHHHHHHHHHHhccccccccc
Q 024709 79 YPIPTRAEVADVSELVRQQADALMLSG 105 (264)
Q Consensus 79 ~~~ptrae~~dv~~~v~~g~d~~~ls~ 105 (264)
...-+. .|+...+..|+|+||+..
T Consensus 198 GgI~s~---eda~e~l~~GAd~VmvgR 221 (231)
T TIGR00736 198 NSIDDI---ESAKEMLKAGADFVSVAR 221 (231)
T ss_pred CCcCCH---HHHHHHHHhCCCeEEEcH
Confidence 344444 355666778999999874
No 487
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=25.18 E-value=2.7e+02 Score=25.48 Aligned_cols=76 Identities=20% Similarity=0.162 Sum_probs=50.2
Q ss_pred CChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCCh---HHHHHHH-HHHHhccccccccccccCCCChHHHHHHHH
Q 024709 46 EQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTR---AEVADVS-ELVRQQADALMLSGESAMGQFPDKALAVLR 121 (264)
Q Consensus 46 ~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptr---ae~~dv~-~~v~~g~d~~~ls~eta~G~yP~eav~~m~ 121 (264)
++.....+.+++.++++|..+...=.+ ...+|.-+| ..+-+++ .+...|+|.+.|. +|.=...|.+.-+.++
T Consensus 116 ~e~l~~~~~~v~~ak~~g~~v~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~-DT~G~~~P~~v~~lv~ 191 (287)
T PRK05692 116 AESLERFEPVAEAAKQAGVRVRGYVSC---VLGCPYEGEVPPEAVADVAERLFALGCYEISLG-DTIGVGTPGQVRAVLE 191 (287)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEEEE---EecCCCCCCCCHHHHHHHHHHHHHcCCcEEEec-cccCccCHHHHHHHHH
Confidence 455556788999999999987521110 012233323 3333333 3667899999998 8888889999888888
Q ss_pred HHHH
Q 024709 122 SVSL 125 (264)
Q Consensus 122 ~i~~ 125 (264)
.+.+
T Consensus 192 ~l~~ 195 (287)
T PRK05692 192 AVLA 195 (287)
T ss_pred HHHH
Confidence 7754
No 488
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=25.16 E-value=68 Score=27.99 Aligned_cols=75 Identities=21% Similarity=0.310 Sum_probs=44.4
Q ss_pred CHHHHhcHHHHHhhc-ceeeecCCCc--------ccCCCCC--ChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCC
Q 024709 15 SIDSLKNLNEIILAS-DGAMVARGDL--------GAQVPLE--QVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPT 83 (264)
Q Consensus 15 ~~~~~~n~~eI~~~~-Dgi~i~rgdL--------~~~~~~~--~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~pt 83 (264)
++.+.+.+.++.+.- |-+.||=|=+ ..+.|.+ -.|..-..+++.|+..|.|++..+ -.|
T Consensus 45 ~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~~~~~v~~~~~~~~~~~~~G~---------~t~- 114 (206)
T PRK09140 45 SPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPNTDPEVIRRAVALGMVVMPGV---------ATP- 114 (206)
T ss_pred CccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCCCCHHHHHHHHHCCCcEEccc---------CCH-
Confidence 455666666666553 2355554422 1122211 112233578899999999998732 233
Q ss_pred hHHHHHHHHHHHhccccccc
Q 024709 84 RAEVADVSELVRQQADALML 103 (264)
Q Consensus 84 rae~~dv~~~v~~g~d~~~l 103 (264)
+++..+...|+|.+-+
T Consensus 115 ----~E~~~A~~~Gad~vk~ 130 (206)
T PRK09140 115 ----TEAFAALRAGAQALKL 130 (206)
T ss_pred ----HHHHHHHHcCCCEEEE
Confidence 3457888999999986
No 489
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=25.02 E-value=62 Score=18.11 Aligned_cols=12 Identities=25% Similarity=0.545 Sum_probs=11.0
Q ss_pred CCCCCEEEEEec
Q 024709 242 IKSGDLIIVVSD 253 (264)
Q Consensus 242 ~~~GD~VVvvsG 253 (264)
+++||.|.++.|
T Consensus 2 ~~~G~~V~I~~G 13 (28)
T smart00739 2 FEVGDTVRVIAG 13 (28)
T ss_pred CCCCCEEEEeEC
Confidence 579999999999
No 490
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=25.01 E-value=5.2e+02 Score=23.40 Aligned_cols=100 Identities=13% Similarity=0.121 Sum_probs=54.3
Q ss_pred HHHHhc-HHHHHhh-cceeeecCCCcccCCC---CCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHH
Q 024709 16 IDSLKN-LNEIILA-SDGAMVARGDLGAQVP---LEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADV 90 (264)
Q Consensus 16 ~~~~~n-~~eI~~~-~Dgi~i~rgdL~~~~~---~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv 90 (264)
.+++++ ++..++. +||+++. |- ..|.. .++=..+.+..++.+. -..||++.+ ..-|+.-+.-.
T Consensus 20 ~~~l~~l~~~l~~~Gv~gi~v~-Gs-tGE~~~Ls~eEr~~l~~~~~~~~~-~~~pvi~gv---------~~~t~~~i~~a 87 (289)
T cd00951 20 EDAYRAHVEWLLSYGAAALFAA-GG-TGEFFSLTPDEYAQVVRAAVEETA-GRVPVLAGA---------GYGTATAIAYA 87 (289)
T ss_pred HHHHHHHHHHHHHcCCCEEEEC-cC-CcCcccCCHHHHHHHHHHHHHHhC-CCCCEEEec---------CCCHHHHHHHH
Confidence 345554 4555555 8999985 21 22333 3443444444444442 247888744 12233333444
Q ss_pred HHHHHhccccccccccccCCCChHHHHHHHHHHHHHH
Q 024709 91 SELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRI 127 (264)
Q Consensus 91 ~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~ 127 (264)
..+-..|+|++|+..=--...-+-+.++..+.++..+
T Consensus 88 ~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~ 124 (289)
T cd00951 88 QAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKST 124 (289)
T ss_pred HHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcC
Confidence 5578899999999653322222345566666666544
No 491
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=24.97 E-value=1.5e+02 Score=24.53 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCchHHHHH-----hhcCCCCcEEEEcCCh
Q 024709 169 KASALFVYTKTGQMASLL-----SRSRPDCPIFAFAPMS 202 (264)
Q Consensus 169 ~A~aIVv~T~sG~tA~~i-----Sr~RP~~PIiAvT~~~ 202 (264)
+-+.+|++|.||.|...+ +|-| .+|+|++|.+.
T Consensus 101 ~~Dv~I~iS~SG~t~~~i~~~~~ak~~-Ga~vI~IT~~~ 138 (177)
T cd05006 101 PGDVLIGISTSGNSPNVLKALEAAKER-GMKTIALTGRD 138 (177)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence 347899999999986544 3444 59999999764
No 492
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=24.94 E-value=4e+02 Score=22.25 Aligned_cols=78 Identities=19% Similarity=0.111 Sum_probs=44.0
Q ss_pred HHh-hcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccc
Q 024709 25 IIL-ASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALML 103 (264)
Q Consensus 25 I~~-~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~l 103 (264)
.+. -+|.+.+.++--+...+.+......+++.+. ...|+.+.. .-+ ..++..+...|+|++.+
T Consensus 122 ~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~i~~~G----------GI~---~~~i~~~~~~Gad~vvv 185 (202)
T cd04726 122 LLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKL---LGVKVAVAG----------GIT---PDTLPEFKKAGADIVIV 185 (202)
T ss_pred HHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhh---cCCCEEEEC----------CcC---HHHHHHHHhcCCCEEEE
Confidence 444 3898888765322233222223333333322 567887633 112 13567888899999999
Q ss_pred cccccCCCChHHHHH
Q 024709 104 SGESAMGQFPDKALA 118 (264)
Q Consensus 104 s~eta~G~yP~eav~ 118 (264)
++--..-..|.++++
T Consensus 186 Gsai~~~~d~~~~~~ 200 (202)
T cd04726 186 GRAITGAADPAEAAR 200 (202)
T ss_pred eehhcCCCCHHHHHh
Confidence 865544555666554
No 493
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=24.94 E-value=2.2e+02 Score=24.75 Aligned_cols=38 Identities=13% Similarity=0.093 Sum_probs=31.6
Q ss_pred HHHHHHHHHhccccccccccccCCCChHHHHHHHHHHH
Q 024709 87 VADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVS 124 (264)
Q Consensus 87 ~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~ 124 (264)
...+..+...|++++..+...-....|.++++.+++++
T Consensus 197 l~~~~~~~~~Ga~gv~vg~~i~~~~dp~~~~~~~~~~~ 234 (235)
T cd00958 197 LKMVYDAMEAGAAGVAVGRNIFQRPDPVAMLRAISAVV 234 (235)
T ss_pred HHHHHHHHHcCCcEEEechhhhcCCCHHHHHHHHHHHh
Confidence 35577888999999999888888888999999888764
No 494
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=24.92 E-value=3e+02 Score=26.79 Aligned_cols=71 Identities=17% Similarity=0.251 Sum_probs=44.7
Q ss_pred cHHHHHhhcceeeecCCCcccCC-CCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCChHH-HHHHHHHHHhcc
Q 024709 21 NLNEIILASDGAMVARGDLGAQV-PLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPTRAE-VADVSELVRQQA 98 (264)
Q Consensus 21 n~~eI~~~~Dgi~i~rgdL~~~~-~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~ptrae-~~dv~~~v~~g~ 98 (264)
++-..++-+|.++-+=||+=.+. +...+.. ...++..|||+++-.|=+ -|=+-. -...++.+...+
T Consensus 110 ~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y-----~l~A~l~gkpv~l~gqsi-------GPf~~~~~r~l~r~vl~~~ 177 (426)
T PRK10017 110 DFVRLLSGYDAIIQVGGSFFVDLYGVPQFEH-----ALCAFMAKKPLYMIGHSV-------GPFQDEQFNQLANYVFGHC 177 (426)
T ss_pred HHHHHHHhCCEEEECCCCccccCcccHHHHH-----HHHHHHcCCCEEEECCcC-------CCcCCHHHHHHHHHHHhcC
Confidence 34445666999999999997764 4332222 246788999999977633 443332 244556666666
Q ss_pred ccccc
Q 024709 99 DALML 103 (264)
Q Consensus 99 d~~~l 103 (264)
|.|.+
T Consensus 178 ~~Itv 182 (426)
T PRK10017 178 DALIL 182 (426)
T ss_pred CEEEE
Confidence 66544
No 495
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=24.91 E-value=1.3e+02 Score=22.44 Aligned_cols=20 Identities=20% Similarity=0.494 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhCCCEEE
Q 024709 49 PSIQEKIVQLCRQLNKPVIV 68 (264)
Q Consensus 49 ~~~qk~ii~~~~~~gkpv~~ 68 (264)
+...+.+...|+.++.|+..
T Consensus 36 ~~~~k~i~~~c~~~~Vpv~~ 55 (82)
T PRK13601 36 EHVTKKIKELCEEKSIKIVY 55 (82)
T ss_pred HHHHHHHHHHHHhCCCCEEE
Confidence 57889999999999999975
No 496
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=24.90 E-value=4.1e+02 Score=24.08 Aligned_cols=42 Identities=17% Similarity=0.446 Sum_probs=30.8
Q ss_pred HHHhcHHHHHhh--cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEE
Q 024709 17 DSLKNLNEIILA--SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIV 68 (264)
Q Consensus 17 ~~~~n~~eI~~~--~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~ 68 (264)
-|++++=+-++. +||++|- ++|.++ ..++.+.|+++|...+.
T Consensus 106 ~G~e~F~~~~~~aGvdgviip------DLP~ee----~~~~~~~~~~~gi~~I~ 149 (263)
T CHL00200 106 YGINKFIKKISQAGVKGLIIP------DLPYEE----SDYLISVCNLYNIELIL 149 (263)
T ss_pred hCHHHHHHHHHHcCCeEEEec------CCCHHH----HHHHHHHHHHcCCCEEE
Confidence 377776444444 8999994 445443 67889999999998886
No 497
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=24.81 E-value=1.1e+02 Score=29.91 Aligned_cols=49 Identities=18% Similarity=0.163 Sum_probs=33.9
Q ss_pred HHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhh
Q 024709 22 LNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESM 76 (264)
Q Consensus 22 ~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM 76 (264)
++.+++. .+||.|. -+|.-.++......++++.+.|+||+++||-+.-.
T Consensus 305 l~~~~~~g~~GiVle------g~G~Gnvp~~~~~~l~~a~~~Gi~VV~tSqc~~G~ 354 (419)
T PRK04183 305 LDFYVDKGYKGIVIE------GTGLGHVSTDLIPSIKRATDDGIPVVMTSQCLYGR 354 (419)
T ss_pred HHHHHhCCCCEEEEE------eECCCCCCHHHHHHHHHHHHCCCEEEEeCCCCCCc
Confidence 3444444 7899986 34444445556667778888999999999987543
No 498
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=24.79 E-value=1.7e+02 Score=27.05 Aligned_cols=55 Identities=22% Similarity=0.336 Sum_probs=34.1
Q ss_pred cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhC--CCEEEEhhhhhhhhhCCCCChHHHHHHHHHHHhccccccccc
Q 024709 29 SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLN--KPVIVASQLLESMIEYPIPTRAEVADVSELVRQQADALMLSG 105 (264)
Q Consensus 29 ~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~g--kpv~~atq~leSM~~~~~ptrae~~dv~~~v~~g~d~~~ls~ 105 (264)
+|+|||=...+..- -.+..++++++.. |++.|=.+ ...++..++..|+|.+||.+
T Consensus 154 sd~vLikdnHi~~~--------~i~~av~~~r~~~~~~kIeVEv~--------------~leea~~a~~agaDiI~LDn 210 (278)
T PRK08385 154 SDAILIKDNHLALV--------PLEEAIRRAKEFSVYKVVEVEVE--------------SLEDALKAAKAGADIIMLDN 210 (278)
T ss_pred cccEEEccCHHHHH--------HHHHHHHHHHHhCCCCcEEEEeC--------------CHHHHHHHHHcCcCEEEECC
Confidence 56676655554321 2445556666654 67776221 13456778899999999974
No 499
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=24.76 E-value=1.6e+02 Score=26.31 Aligned_cols=42 Identities=19% Similarity=0.223 Sum_probs=28.7
Q ss_pred HhcHHHHHhh-cceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEh
Q 024709 19 LKNLNEIILA-SDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVAS 70 (264)
Q Consensus 19 ~~n~~eI~~~-~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~at 70 (264)
.+.++.++.. +|||++.+.|- ..-...++++++.|+||++..
T Consensus 47 ~~~i~~l~~~~vdgiii~~~~~----------~~~~~~~~~~~~~giPvV~~~ 89 (303)
T cd01539 47 NEQIDTALAKGVDLLAVNLVDP----------TAAQTVINKAKQKNIPVIFFN 89 (303)
T ss_pred HHHHHHHHHcCCCEEEEecCch----------hhHHHHHHHHHHCCCCEEEeC
Confidence 3556666665 99999986542 112356677888999999743
No 500
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=24.71 E-value=2.2e+02 Score=27.32 Aligned_cols=177 Identities=15% Similarity=0.175 Sum_probs=101.1
Q ss_pred CCcceEEEeccCHHHHhcHHHHHhhcceeeecCCCcccCCCCCChHHHHHHHHHHHHHhCCCEEEEhhhhhhhhhCCCCC
Q 024709 4 LVNIAVIAKIESIDSLKNLNEIILASDGAMVARGDLGAQVPLEQVPSIQEKIVQLCRQLNKPVIVASQLLESMIEYPIPT 83 (264)
Q Consensus 4 ~~~~~iiakIE~~~~~~n~~eI~~~~Dgi~i~rgdL~~~~~~~~v~~~qk~ii~~~~~~gkpv~~atq~leSM~~~~~pt 83 (264)
...+.....|.+++-++..-+..+..|-+++--.|.. -||+|. +|.+....+.-++. ...+
T Consensus 72 g~~~~~~v~i~~~~~~~~a~~~~~~~~~~iv~~~Dw~-iIPlEn-------liA~~~~~~~~i~a-----------~v~~ 132 (354)
T PF01959_consen 72 GKEVGVYVEITDKEDEEEACELAKRADYVIVEFRDWT-IIPLEN-------LIAALQGSSTKIIA-----------VVAD 132 (354)
T ss_pred CceEEEEEEECCHHHHHHHHHHhccCCeEEEEcCCCc-EecHHH-------HHHHhcCCCceEEE-----------EeCC
Confidence 3456678899999999999999998888888766663 467665 44444444444443 2445
Q ss_pred hHHHHHHHHHHHhccccccccccccCCCChHHHHHHHHHHHHHHHh-hhhccc----ccccCC--------CCCCCCC--
Q 024709 84 RAEVADVSELVRQQADALMLSGESAMGQFPDKALAVLRSVSLRIEK-WCREGK----QHATFE--------PPPISSS-- 148 (264)
Q Consensus 84 rae~~dv~~~v~~g~d~~~ls~eta~G~yP~eav~~m~~i~~~~E~-~~~~~~----~~~~~~--------~~~~~~~-- 148 (264)
-.|..=...++..|+|+|+|..+ .| ..++-+...+.+.+. .+.... .-+... ...+..+
T Consensus 133 ~~eA~~~~~~LE~G~dGVll~~~-----d~-~ei~~~~~~~~~~~~~~l~L~~a~Vt~V~~vGmGdRVCVDtcsll~~gE 206 (354)
T PF01959_consen 133 AEEARVALEVLEKGVDGVLLDPD-----DP-AEIKALVALLKERSQEKLELVPATVTRVEPVGMGDRVCVDTCSLLRPGE 206 (354)
T ss_pred HHHHHHHHHHHhcCCCeEEECCC-----CH-HHHHHHHHHHhhccCCcceeEEEEEEEEEEcCCccEEEEEccccCCCCC
Confidence 55666668899999999999876 23 344444454444221 111000 000000 0000000
Q ss_pred ------CCCCc----hHHHHHH-HHHHHHhcCCcEEEEEcCC-chHHHHHhhcCCCCcEEEEcCChhhh
Q 024709 149 ------VSAGI----PGEICNG-AAKIANKLKASALFVYTKT-GQMASLLSRSRPDCPIFAFAPMSSVR 205 (264)
Q Consensus 149 ------~~~~~----~~aIA~a-Av~lA~~l~A~aIVv~T~s-G~tA~~iSr~RP~~PIiAvT~~~~~a 205 (264)
.+... .|..-+. ....-+..||.++=.|+.. |...+++|-.+..-.++++-.+-++.
T Consensus 207 GmLVGs~s~glfLVhsEt~~~pYva~RPFRVNAGaVHaYv~~pg~kT~YLSEL~sG~~VlvVd~~G~tR 275 (354)
T PF01959_consen 207 GMLVGSSSSGLFLVHSETHESPYVASRPFRVNAGAVHAYVLMPGGKTRYLSELRSGDEVLVVDADGRTR 275 (354)
T ss_pred eEEEcccCceEEEEEeccccCCCCCCCCceEecCcceeEEEcCCCceeehhhhcCCCEEEEEeCCCCEE
Confidence 00000 0000000 0011245678777777766 77778899999999999998876653
Done!