BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024710
(264 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XB3|A Chain A, The Structure Of Cyanobacterial Psbp
Length = 165
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 75/173 (43%), Gaps = 24/173 (13%)
Query: 100 AANEDLRVYTDELNKFEISIPQDW-QLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGP 158
+A L+ Y D + +E P+ W Q+ +P F+ ++ +VSVV+ +
Sbjct: 3 SATSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDV----VFHDIIETTENVSVVVNTVA- 57
Query: 159 DFTRMESFGKVEAFADTLVSGLDRSWRRP--PGVAAKLIDCKASKG----FYYIEYTLQN 212
+E G E D L+ R+ P G ++ LI + K +Y +EY +
Sbjct: 58 STKSLEELGSPEEVGDRLL----RNIIAPSESGRSSALIAATSQKADDKTYYILEYAVTL 113
Query: 213 PGES----RKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASF 261
PG+ ++H S+I ++ ++YT++ EE K + V+SF
Sbjct: 114 PGDGNTAQQRHNLSSIAVSR----GKVYTLSVSAPEERWPKVEDQFKTIVSSF 162
>pdb|1F6F|A Chain A, Crystal Structure Of The Ternary Complex Between Ovine
Placental Lactogen And The Extracellular Domain Of The
Rat Prolactin Receptor
Length = 199
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 14 ISPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQEDDARTL 61
IS LH+W + HHA T +N+KGT+ K QE ++ A+ L
Sbjct: 87 ISLLHSWDEPLHHA-VTELANSKGTSP-----ALLTKAQEIKEKAKVL 128
>pdb|3NFZ|A Chain A, Crystal Structure Of Murine Aminoacylase 3 In Complex With
N-Acetyl-L- Tyrosine
pdb|3NH5|A Chain A, Crystal Structure Of E177a-Mutant Murine Aminoacylase 3
pdb|3NH8|A Chain A, Crystal Structure Of Murine Aminoacylase 3 In Complex With
N-Acetyl-S- 1,2-Dichlorovinyl-L-Cysteine
Length = 327
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 202 GFYYIEYTLQNPGESRKHLFSAIGMASN 229
G Y Y LQNPGE ++ FSA+ + +N
Sbjct: 36 GVYLARYWLQNPGELQRPSFSAMPVLAN 63
>pdb|3NH4|A Chain A, Crystal Structure Of Murine Aminoacylase 3
Length = 327
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 202 GFYYIEYTLQNPGESRKHLFSAIGMASN 229
G Y Y LQNPGE ++ FSA+ + +N
Sbjct: 36 GVYLARYWLQNPGELQRPSFSAMPVLAN 63
>pdb|3QEH|B Chain B, Crystal Structure Of Human N12-I15, An Adcc And
Non-Neutralizing Anti- Hiv-1 Env Antibody
pdb|3QEH|D Chain D, Crystal Structure Of Human N12-I15, An Adcc And
Non-Neutralizing Anti- Hiv-1 Env Antibody
pdb|3QEH|F Chain F, Crystal Structure Of Human N12-I15, An Adcc And
Non-Neutralizing Anti- Hiv-1 Env Antibody
pdb|3QEH|H Chain H, Crystal Structure Of Human N12-I15, An Adcc And
Non-Neutralizing Anti- Hiv-1 Env Antibody
Length = 218
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 7/40 (17%)
Query: 188 PGVAAKLIDCKASK------GFYYIEYTLQNPGESRKHLF 221
PG AA I C++S+ GF Y+++ LQ PG+S + L
Sbjct: 15 PGEAAS-ISCRSSQSLLHTNGFQYLDWYLQKPGQSPQLLI 53
>pdb|1FRF|L Chain L, Crystal Structure Of The Ni-Fe Hydrogenase From
Desulfovibrio Fructosovorans
Length = 564
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 105 LRVYTDELNKFEISIPQDWQLGAGEPNGFKS 135
+R+ +++ F++ +P W LG P G KS
Sbjct: 483 IRIKGKKIDNFQLVVPSTWNLGPRGPQGDKS 513
>pdb|2EH8|L Chain L, Crystal Structure Of The Complex Of Humanized Kr127 Fab
And Pres1 Peptide Epitope
Length = 218
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 188 PGVAAKLIDCKASK------GFYYIEYTLQNPGESRKHLFSAIGMASNGWYNR 234
PG A I CK+S+ G Y+ + LQ PG+S K L + +G +R
Sbjct: 15 PGQPAS-ISCKSSQSLLYSNGKTYLNWLLQKPGQSPKRLIYLVSKLDSGVPDR 66
>pdb|2EH7|L Chain L, Crystal Structure Of Humanized Kr127 Fab
Length = 219
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 188 PGVAAKLIDCKASK------GFYYIEYTLQNPGESRKHLFSAIGMASNGWYNR 234
PG A I CK+S+ G Y+ + LQ PG+S K L + +G +R
Sbjct: 15 PGQPAS-ISCKSSQSLLYSNGKTYLNWLLQKPGQSPKRLIYLVSKLDSGVPDR 66
>pdb|1YEI|L Chain L, Catalytic Antibody D2.3 Complex
pdb|1YEJ|L Chain L, Catalytic Antibody Complex
pdb|1YEK|L Chain L, Catalytic Antibody D2.3 Complex
pdb|1KN2|L Chain L, Catalytic Antibody D2.3 Complex
pdb|1KN4|L Chain L, Catalytic Antibody D2.3 Complex
Length = 219
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 195 IDCKASK------GFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRL 235
I CK+S+ G Y+ + LQ PG+S K L + +G +R+
Sbjct: 21 ISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIHLVSKLDSGVPDRI 67
>pdb|1YEC|L Chain L, Structure Of A Catalytic Antibody Igg2a Fab Fragment
(D2.3)
pdb|1YEF|L Chain L, Structure Of Igg2a Fab Fragment (D2.3) Complexed With
Substrate Analogue
pdb|1YEG|L Chain L, Structure Of Igg2a Fab Fragment (D2.3) Complexed With
Reaction Product
pdb|1YEH|L Chain L, Structure Of Igg2a Fab Fragment
Length = 219
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 195 IDCKASK------GFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRL 235
I CK+S+ G Y+ + LQ PG+S K L + +G +R+
Sbjct: 21 ISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIHLVSKLDSGVPDRI 67
>pdb|1PS9|A Chain A, The Crystal Structure And Reaction Mechanism Of E. Coli
2,4- Dienoyl Coa Reductase
Length = 671
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 130 PNGFKSITAFYPQEASSSSVSVVITGLGPDFT 161
P+G + + AFY + A +V G+ PD T
Sbjct: 33 PDGAERLAAFYAERARHGVALIVSGGIAPDLT 64
>pdb|3LEX|L Chain L, 2f5 Epitope Scaffold Elicited Anti-Hiv-1 Monoclonal
Antibody 11f10 In Complex With Hiv-1 Gp41
pdb|3LEX|B Chain B, 2f5 Epitope Scaffold Elicited Anti-Hiv-1 Monoclonal
Antibody 11f10 In Complex With Hiv-1 Gp41
Length = 219
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 195 IDCKASK------GFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRL 235
I CK+S+ G Y+ + LQ PG+S K L + ++G +R
Sbjct: 21 ISCKSSQSLLDSDGKTYLNWLLQRPGQSPKRLIYLVSKLASGVPDRF 67
>pdb|3LEY|L Chain L, 2f5 Epitope Scaffold Elicited Anti-Hiv-1 Monoclonal
Antibody 6a7 In Complex With Hiv-1 Gp41
Length = 219
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 195 IDCKASK------GFYYIEYTLQNPGESRKHLFSAIGMASNGWYNR 234
I CK+S+ G Y+ + LQ PG+S K L + ++G +R
Sbjct: 21 ISCKSSQSLLDSDGKTYLNWLLQRPGQSPKRLIYLVSKLASGVPDR 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,847,040
Number of Sequences: 62578
Number of extensions: 315728
Number of successful extensions: 1073
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1066
Number of HSP's gapped (non-prelim): 18
length of query: 264
length of database: 14,973,337
effective HSP length: 97
effective length of query: 167
effective length of database: 8,903,271
effective search space: 1486846257
effective search space used: 1486846257
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)