BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024710
         (264 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9S720|PPD3_ARATH PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis
           thaliana GN=PPD3 PE=1 SV=2
          Length = 247

 Score =  303 bits (775), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 159/259 (61%), Positives = 186/259 (71%), Gaps = 17/259 (6%)

Query: 11  MASISPLHTWSQRPHHASFTAFSNNKGTNQYKKQFVFCCKKQEQED--DARTLNRFRIEE 68
           MA+ISP   W   P      +FSN + T    ++   C          D+    + RI  
Sbjct: 1   MAAISP---WLSSPQ-----SFSNPRVTITDSRR---CSSISAAISVLDSSNEEQHRISS 49

Query: 69  QDDDSRTKRREVMFQLAFTACSFPAIVSYALA---ANEDLRVYTDELNKFEISIPQDWQL 125
           +D     KRR+VM Q+A +    P  +S A A   A+E  RVYTDE NKFEISIPQDWQ+
Sbjct: 50  RDHVG-MKRRDVMLQIASSVFFLPLAISPAFAETNASEAFRVYTDETNKFEISIPQDWQV 108

Query: 126 GAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWR 185
           G  EPNGFKSITAFYPQE S+S+VS+ ITGLGPDFTRMESFGKVEAFA+TLVSGLDRSW+
Sbjct: 109 GQAEPNGFKSITAFYPQETSTSNVSIAITGLGPDFTRMESFGKVEAFAETLVSGLDRSWQ 168

Query: 186 RPPGVAAKLIDCKASKGFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEE 245
           +P GV AKLID +ASKGFYYIEYTLQNPGE+RKHL+SAIGMA+NGWYNRLYTVTGQF +E
Sbjct: 169 KPVGVTAKLIDSRASKGFYYIEYTLQNPGEARKHLYSAIGMATNGWYNRLYTVTGQFTDE 228

Query: 246 ESEKYGSNIEKAVASFRFI 264
           ES +  S I+K V SFRFI
Sbjct: 229 ESAEQSSKIQKTVKSFRFI 247


>sp|Q0CL13|DBP3_ASPTN ATP-dependent RNA helicase dbp3 OS=Aspergillus terreus (strain NIH
           2624 / FGSC A1156) GN=dbp3 PE=3 SV=1
          Length = 493

 Score = 34.3 bits (77), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 85/220 (38%), Gaps = 46/220 (20%)

Query: 75  TKRREVMF---------QLAFTACSFPAIVSYALAANEDLRVYTDELNKFEISIPQD--- 122
           +KR+ VMF         +LA T  S P  V+     + D R  T      E+  P +   
Sbjct: 256 SKRQTVMFTATWPPVVRELASTFMSSPVTVTIGGDPSADPRANTRIKQVVEVVKPHEKEG 315

Query: 123 --WQLGAGEPNGFKSITAF--YPQEASS-----SSVSVVITGLGPDFTRMESFGKVEAF- 172
              QL      G + + AF  Y +EA+       S    + G+  D ++ E F  ++AF 
Sbjct: 316 RLVQLLKQHQRGAEKVLAFCLYKKEATRIERFLQSRGFKVAGIHGDLSQQERFRSLDAFK 375

Query: 173 --ADTLVSGLDRSWRRPPGVAAKLIDCKASKGFYYIEYTL------QNPGESRKH----- 219
             A T++   D        VAA+ +D  A K    + + L         G + +      
Sbjct: 376 TGAATVLVATD--------VAARGLDIPAVKLVINVTFPLTVEDYVHRIGRTGRAGAEGH 427

Query: 220 ---LFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEK 256
              LF+    A +G    +    GQ V EE  K+G  ++K
Sbjct: 428 AITLFTETDKAQSGALINVLKAAGQEVPEELLKFGGTVKK 467


>sp|P82681|TL13_SPIOL Thylakoid lumenal 13.8 kDa protein (Fragment) OS=Spinacia oleracea
           PE=1 SV=1
          Length = 21

 Score = 32.0 bits (71), Expect = 4.4,   Method: Composition-based stats.
 Identities = 12/20 (60%), Positives = 18/20 (90%)

Query: 103 EDLRVYTDELNKFEISIPQD 122
           ++ RVY+D+ NK++ISIPQD
Sbjct: 2   DEFRVYSDDANKYKISIPQD 21


>sp|A1AV71|DXR_RUTMC 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Ruthia magnifica
           subsp. Calyptogena magnifica GN=dxr PE=3 SV=1
          Length = 383

 Score = 31.6 bits (70), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 34/69 (49%)

Query: 107 VYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESF 166
           +++D+ N F +S   +WQL     N ++   A    E+S+  +S +IT      +  ++ 
Sbjct: 23  LHSDKFNIFTLSANTNWQLMLELCNKYQPNYAIMVDESSAEKLSTIITTDTQILSGTQAL 82

Query: 167 GKVEAFADT 175
            KV A  DT
Sbjct: 83  DKVVAHQDT 91


>sp|Q8VY52|PPD2_ARATH PsbP domain-containing protein 2, chloroplastic OS=Arabidopsis
           thaliana GN=PPD2 PE=1 SV=1
          Length = 232

 Score = 31.2 bits (69), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 59/134 (44%), Gaps = 13/134 (9%)

Query: 103 EDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTR 162
           E+L+ YTD  N F + IP  +     E  G  ++  F      S+++ VV++ +      
Sbjct: 73  EELQRYTDSNNGFTLLIPSSYT--KVEKAGANAL--FEELNNGSNNIGVVVSPV--RIKS 126

Query: 163 MESFGKVEAFADTLVSGLDRSWRRPPGVAAKLIDCKASKGF----YYIEYTLQNPGESRK 218
           ++ FG  +  AD L++      R+     A+++      G     Y  EY + +     K
Sbjct: 127 LDQFGSPQFVADKLINA---EKRKESTKEAEVVSVGERAGLGQQVYEFEYKIDSTRGGIK 183

Query: 219 HLFSAIGMASNGWY 232
            +FSA  ++SN  Y
Sbjct: 184 RVFSAAFVSSNKLY 197


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.130    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,134,590
Number of Sequences: 539616
Number of extensions: 3931656
Number of successful extensions: 8932
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8927
Number of HSP's gapped (non-prelim): 5
length of query: 264
length of database: 191,569,459
effective HSP length: 115
effective length of query: 149
effective length of database: 129,513,619
effective search space: 19297529231
effective search space used: 19297529231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)