Query 024710
Match_columns 264
No_of_seqs 135 out of 172
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 13:05:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024710.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024710hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xb3_A PSBP protein; photosynt 100.0 6.2E-37 2.1E-41 258.0 19.0 153 102-264 5-165 (165)
2 1v2b_A 23-kDa polypeptide of p 100.0 1.9E-36 6.3E-41 261.3 15.3 153 102-264 6-177 (177)
3 2lnj_A SLL1418 protein, putati 100.0 1E-38 3.6E-43 271.6 0.0 154 102-264 11-170 (170)
4 1tu1_A Hypothetical protein PA 98.0 0.00011 3.9E-09 60.4 13.4 132 105-263 3-141 (148)
5 3lyd_A Uncharacterized protein 96.9 0.031 1.1E-06 47.5 14.5 132 113-264 18-158 (161)
6 3hlz_A Uncharacterized protein 67.1 45 0.0015 30.1 10.3 43 106-153 5-48 (269)
7 3mtv_A NSP1B, papain-like cyst 17.8 1.2E+02 0.0043 26.2 4.2 39 101-139 131-177 (203)
8 3p6a_A RHO guanine nucleotide 13.7 1.7E+02 0.006 25.8 4.3 43 217-263 333-375 (377)
9 1q90_R Cytochrome B6-F complex 13.0 1E+02 0.0035 21.0 2.0 15 73-87 7-21 (49)
10 2fpn_A YWMB; structural genomo 12.5 5.7E+02 0.02 21.9 7.2 61 201-262 58-122 (216)
No 1
>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}
Probab=100.00 E-value=6.2e-37 Score=257.95 Aligned_cols=153 Identities=24% Similarity=0.441 Sum_probs=132.5
Q ss_pred cCCceeeeeCCCceEEEccCCCccCCCCCCCcceEEEeccCCCCCceeEEEEecCCCCccccccCCCHHHHHHHHHhccc
Q 024710 102 NEDLRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLD 181 (264)
Q Consensus 102 ~~gf~~y~D~~dGYsf~yPs~W~~~~G~~~g~k~Vv~F~p~~~~~eNVSVvITpv~~d~~sL~dfGsPeeva~~Lv~~l~ 181 (264)
.+||++|.|+.+||+|+||++|+..... .|. .++|+|+++..+||+|+|+|+++ +++|++||+|++||++|++...
T Consensus 5 ~~g~~~~~D~~~gysf~~P~~W~~~~~~-~g~--~v~f~d~~~~~~~v~V~v~p~~~-~~~l~~~G~~e~va~~l~~~~~ 80 (165)
T 2xb3_A 5 TSGLQAYVDSYDGYEFLYPRGWVQVQVE-DPV--DVVFHDIIETTENVSVVVNTVAS-TKSLEELGSPEEVGDRLLRNII 80 (165)
T ss_dssp -CCEEEEEETTTTEEEEEETTEEEECCC-TTE--EEEEEESSCTTSEEEEEEEECSS-CCCSGGGCCHHHHHHHHHHHTT
T ss_pred CCCceEEEcCCCCEEEEcCCCCeEecCC-CCc--eEEEECcccCCceEEEEEecCCC-CCChHHcCCHHHHHHHHHHHhh
Confidence 4699999999999999999999976532 133 47899999889999999999975 5899999999999999999864
Q ss_pred ccCCCCCCCeeeEEEeeec--Cc--eEEEEEEEECCC----CCceeEEEEEEEecCCccceeEEEEcccCchhhHHHHHH
Q 024710 182 RSWRRPPGVAAKLIDCKAS--KG--FYYIEYTLQNPG----ESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSN 253 (264)
Q Consensus 182 ~s~~~~~~~~A~LldA~sr--~g--yY~~EY~v~~p~----e~~RH~ls~v~V~~nG~y~kLYTltaq~~E~rw~k~~~~ 253 (264)
.+ .++++.++||++.+| +| ||+|||+++.|+ ++.||.|++++|. || |||||++|+||.+|+++++.
T Consensus 81 ~~--~~~~~~~~l~~a~~r~~~G~~yY~~Ey~~~~~~~~~~~~~rh~l~~~~v~-~g---~lY~l~~sape~~w~~~~~~ 154 (165)
T 2xb3_A 81 AP--SESGRSSALIAATSQKADDKTYYILEYAVTLPGDGNTAQQRHNLSSIAVS-RG---KVYTLSVSAPEERWPKVEDQ 154 (165)
T ss_dssp SC--TTSSCEEEEEEEEEEEETTEEEEEEEEEEECC-----CCEEEEEEEEEEE-TT---EEEEEEEEEEGGGHHHHHHH
T ss_pred cC--CCCCcceEEEEeeeeecCCceEEEEEEEEecCCCccCccccEEEEEEEEE-CC---EEEEEEEecCHHHhHHHHHH
Confidence 21 224899999999998 33 999999999987 4789999999997 54 99999999999999999999
Q ss_pred HHHhhcceeeC
Q 024710 254 IEKAVASFRFI 264 (264)
Q Consensus 254 l~~vvdSF~v~ 264 (264)
|++|++||+|+
T Consensus 155 l~~v~~SF~v~ 165 (165)
T 2xb3_A 155 FKTIVSSFTVY 165 (165)
T ss_dssp HHHHHHTCEEC
T ss_pred HHHHHhhEEeC
Confidence 99999999986
No 2
>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2
Probab=100.00 E-value=1.9e-36 Score=261.29 Aligned_cols=153 Identities=24% Similarity=0.368 Sum_probs=124.8
Q ss_pred cCCceeeeeCCCceEEEccCCCccCC-CCCCCcceEEEeccCCCCCceeEEEEecCCCCccccccCCCHHHHHHHHHhcc
Q 024710 102 NEDLRVYTDELNKFEISIPQDWQLGA-GEPNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGL 180 (264)
Q Consensus 102 ~~gf~~y~D~~dGYsf~yPs~W~~~~-G~~~g~k~Vv~F~p~~~~~eNVSVvITpv~~d~~sL~dfGsPeeva~~Lv~~l 180 (264)
.+||++|. +|||+|+||++|+... ...+|. .++|+|+++.++||+|+|+|+ ++++|+|||+|++|++++.+.+
T Consensus 6 ~~g~~~y~--~~gysf~yP~~W~~~~~~~~~G~--~~~f~d~~~~~~nvsV~v~p~--~~~si~dlGspe~~~~~v~~~l 79 (177)
T 1v2b_A 6 DTDFQTYN--GDGFKLQIPSKWNPNKEVEYPGQ--VLRFEDNFDATSNVIVAITPT--DKKSITDFGSPEQFLSQVDYLL 79 (177)
T ss_dssp -CCEEEEE--CSSEEEEEETTCEECCCCCSTTE--EEEEEETTEEEEEEEEEEEEC--SCSSGGGGCSHHHHHHHTGGGC
T ss_pred CCCceEEe--cCCEEEEcCCCCcccccccCCCc--eEEEeCCcCCCccEEEEEeCC--CCCChhHCCCHHHHHHHHHHHH
Confidence 36999998 9999999999999542 223454 478999999999999999999 4589999999999877777666
Q ss_pred cccCCC-----------CCCCeeeEEEeeec--Cc--eEEEEEEEECCC--CCceeEEEEEEEecCCccceeEEEEcccC
Q 024710 181 DRSWRR-----------PPGVAAKLIDCKAS--KG--FYYIEYTLQNPG--ESRKHLFSAIGMASNGWYNRLYTVTGQFV 243 (264)
Q Consensus 181 ~~s~~~-----------~~~~~A~LldA~sr--~g--yY~~EY~v~~p~--e~~RH~ls~v~V~~nG~y~kLYTltaq~~ 243 (264)
.+.... +++++|+||++.+| +| ||+|||.++.++ ++.||+|++++|. || |||||++|++
T Consensus 80 ~~~~~~~~~~~~~gf~~~~~~~a~ll~a~~r~~~G~~YY~~E~~~~~~~g~e~~rH~l~~~tv~-~g---kLY~l~~~a~ 155 (177)
T 1v2b_A 80 GRQAYSGKTDSEGGFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVN-DG---KLYICKAQAG 155 (177)
T ss_dssp ------------------CCCEEEEEEEEEEEETTEEEEEEEEEEEC-----CCEEEEEEEEEE-TT---EEEEEEEEEE
T ss_pred HHHhhcccccccCCcccCcccceEEEEeEEEEeCCeEEEEEEEEEecCCCCccccEEEEEEEEE-CC---EEEEEEEecC
Confidence 543222 23488999999998 55 999999999886 3689999999997 54 9999999999
Q ss_pred chhhHHH-HHHHHHhhcceeeC
Q 024710 244 EEESEKY-GSNIEKAVASFRFI 264 (264)
Q Consensus 244 E~rw~k~-~~~l~~vvdSF~v~ 264 (264)
|++|+|. ++.|++|++||+|.
T Consensus 156 e~~W~k~~~~~l~~v~~SF~v~ 177 (177)
T 1v2b_A 156 DKRWFKGAKKFVENTATSFSLA 177 (177)
T ss_dssp GGGCSTTTTHHHHHHHHTCEEC
T ss_pred HHHhhhhHHHHHHHHHhheecC
Confidence 9999995 99999999999983
No 3
>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}
Probab=100.00 E-value=1e-38 Score=271.60 Aligned_cols=154 Identities=18% Similarity=0.311 Sum_probs=134.3
Q ss_pred cCCceeeeeCCCceEEEccCCCccCCCC--CCCcceEEEeccCCCCCceeEEEEecCCCCccccccCCCHHHHHHHHHhc
Q 024710 102 NEDLRVYTDELNKFEISIPQDWQLGAGE--PNGFKSITAFYPQEASSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSG 179 (264)
Q Consensus 102 ~~gf~~y~D~~dGYsf~yPs~W~~~~G~--~~g~k~Vv~F~p~~~~~eNVSVvITpv~~d~~sL~dfGsPeeva~~Lv~~ 179 (264)
.+||++|+|+.|||+|+||++|+..+++ ..|. +++|+|+.+.++||+|+|+|++.+ ++|+|||+|++||++|++.
T Consensus 11 ~~g~~~y~d~~~gy~f~~P~gW~~~~~~~~~~g~--~v~f~d~~~~~~nvsV~v~p~~~~-~si~d~G~pe~va~~l~~~ 87 (170)
T 2lnj_A 11 IASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGV--DVVFRDLIERDENLSVIISEIPSD-KTLTDLGTATDVGYRFMKT 87 (170)
Confidence 4699999999999999999999965432 2233 578999999999999999999754 8999999999999999998
Q ss_pred ccccCCCCCCCeeeEEEeeec--C--ceEEEEEEEECCCCCceeEEEEEEEecCCccceeEEEEcccCchhhHHHHHHHH
Q 024710 180 LDRSWRRPPGVAAKLIDCKAS--K--GFYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIE 255 (264)
Q Consensus 180 l~~s~~~~~~~~A~LldA~sr--~--gyY~~EY~v~~p~e~~RH~ls~v~V~~nG~y~kLYTltaq~~E~rw~k~~~~l~ 255 (264)
+.++ .++++.|+||++.++ + .||+|||+++.|+++.||+|++++|. +| |||||++|+||++|++.++.|+
T Consensus 88 ~~~~--~~~~~~a~li~a~~~~~~G~~yY~~Ey~~~~~~~~~rh~l~~~~v~-~g---klY~l~~~ape~~w~~~~~~l~ 161 (170)
T 2lnj_A 88 VNDA--SQGDRQAELINAEARDEDGQVYYTLEYRVLVGDNVERHDLASVTTN-RG---KLITFDLSTAEDRWDTVKSLFD 161 (170)
Confidence 6522 234899999999998 3 49999999999955789999999996 44 9999999999999999999999
Q ss_pred HhhcceeeC
Q 024710 256 KAVASFRFI 264 (264)
Q Consensus 256 ~vvdSF~v~ 264 (264)
+|++||+|+
T Consensus 162 ~v~~SF~v~ 170 (170)
T 2lnj_A 162 TVASSFHVY 170 (170)
Confidence 999999985
No 4
>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3
Probab=98.02 E-value=0.00011 Score=60.40 Aligned_cols=132 Identities=16% Similarity=0.220 Sum_probs=85.9
Q ss_pred ceeeeeCCCceEEEccCCCccCCCCCCCcceEEEeccC-CCCC--ceeEEEEecCCCCccccccCCCHHHHHHHHHhccc
Q 024710 105 LRVYTDELNKFEISIPQDWQLGAGEPNGFKSITAFYPQ-EASS--SSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLD 181 (264)
Q Consensus 105 f~~y~D~~dGYsf~yPs~W~~~~G~~~g~k~Vv~F~p~-~~~~--eNVSVvITpv~~d~~sL~dfGsPeeva~~Lv~~l~ 181 (264)
...|. -+.++|..|.+|+... +.+|... .... -||.|...+++++ .+.+++.++-++.+-
T Consensus 3 m~~y~--~~Egsl~lP~gw~D~t--------~nv~~~~~~~~~g~~~lvIsR~~~~~~-------~~l~~~~~~q~~~l~ 65 (148)
T 1tu1_A 3 MTLYR--LHEADLEIPDAWQDQS--------INIFKLPASGPAREASFVISRDASQGD-------APFADYVARQLENAE 65 (148)
T ss_dssp EEEEE--CSSEEEEEETTSEECC--------BEEEEECCBTTBCCEEEEEEEECCCTT-------SCHHHHHHHHHHHHH
T ss_pred CceEE--ECCEEEeCCCCcEeee--------EEEEEcCCCCCCCceEEEEEeccCCCC-------CCHHHHHHHHHHHHH
Confidence 46687 8999999999999332 2445543 2212 4555555555444 456666655555442
Q ss_pred ccCCCCCCCeeeEEEeeec--Cc--eEEEEEEEECCCCCceeEEEEEEEecCCccceeEEEEcccCchhhHHHHHHHHHh
Q 024710 182 RSWRRPPGVAAKLIDCKAS--KG--FYYIEYTLQNPGESRKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKA 257 (264)
Q Consensus 182 ~s~~~~~~~~A~LldA~sr--~g--yY~~EY~v~~p~e~~RH~ls~v~V~~nG~y~kLYTltaq~~E~rw~k~~~~l~~v 257 (264)
+. . ++ =+++..... +| --.+||+-+.++ +.+|.+-++.+- .+ ++|.++..++...|+..+..++.|
T Consensus 66 ~~-l--~~--y~~~~~~~~~l~g~~a~~~e~~~~~~g-~~~~Q~q~~~~~-~~---~~l~~t~t~~~~~~~~~~~~~~~i 135 (148)
T 1tu1_A 66 KQ-L--PG--FKLHKRWDINIHGHAAVLLDYQWQREG-RDLMLRQVFIER-RP---AVLITTLTTTPADLPHHEPAWKQA 135 (148)
T ss_dssp HH-S--TT--CEEEEEEEEEETTEEEEEEEEEEEETT-EEEEEEEEEECC-SS---SEEEEEEEECGGGHHHHHHHHHHH
T ss_pred hh-C--cC--cEEeeeEeEEEcCCcEEEEEEEEccCC-EEEEEEEEEEEE-CC---eEEEEEEEcCCCCCHHHHHHHHHH
Confidence 11 0 11 011111111 33 477888877655 479999887775 33 999999999999999999999999
Q ss_pred hcceee
Q 024710 258 VASFRF 263 (264)
Q Consensus 258 vdSF~v 263 (264)
++||++
T Consensus 136 ~~Sf~~ 141 (148)
T 1tu1_A 136 MQTLVP 141 (148)
T ss_dssp HHTCEE
T ss_pred HHhccc
Confidence 999985
No 5
>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}
Probab=96.91 E-value=0.031 Score=47.48 Aligned_cols=132 Identities=14% Similarity=0.209 Sum_probs=85.4
Q ss_pred CceEEEccCCCccCCCCCCCcceEEEeccC-CC--CCceeEEEEecCCCCccccccCCCHHHHHHHHHhcccccCCCCCC
Q 024710 113 NKFEISIPQDWQLGAGEPNGFKSITAFYPQ-EA--SSSSVSVVITGLGPDFTRMESFGKVEAFADTLVSGLDRSWRRPPG 189 (264)
Q Consensus 113 dGYsf~yPs~W~~~~G~~~g~k~Vv~F~p~-~~--~~eNVSVvITpv~~d~~sL~dfGsPeeva~~Lv~~l~~s~~~~~~ 189 (264)
-++++-.|.||........ .++--|+ .. =..|+-|.+.-.+.|+ | ++.-..|.+.+. .-++
T Consensus 18 p~~~v~~P~gWe~~~~~~~----~~~~~~~~~~~~F~pN~vVtv~r~~~~~-----~---e~~r~el~~~~~----~lp~ 81 (161)
T 3lyd_A 18 TGFTVPIPETWQPDPTMGT----QFAARPHTPPQGFTPNIIGTVRRAATGA-----L---HNQRTELDQRAT----QLPD 81 (161)
T ss_dssp CEEEEECCTTEEECTTSSS----SEEEEESSCCSSSCCEEEEEEEEECTTH-----H---HHHHHHHHHHHT----TSTT
T ss_pred ceeeccCCCCceEcCCCCc----eEEeccCCCCCCccccEEEEEEecCcHH-----H---HHHHHHHHHHHh----hCCC
Confidence 3788999999997643322 1333433 22 2789999888775553 2 443333333221 1133
Q ss_pred CeeeEEEeeecCc--eEEEEEEEECCCCCcee--EEEEEEEecCCccceeEEE--EcccCchhhHHHHHHHHHhhcceee
Q 024710 190 VAAKLIDCKASKG--FYYIEYTLQNPGESRKH--LFSAIGMASNGWYNRLYTV--TGQFVEEESEKYGSNIEKAVASFRF 263 (264)
Q Consensus 190 ~~A~LldA~sr~g--yY~~EY~v~~p~e~~RH--~ls~v~V~~nG~y~kLYTl--taq~~E~rw~k~~~~l~~vvdSF~v 263 (264)
-+-.-....+.+| -|..||.-+.+.. ..+ .+..+.|.++| ..|.+ ++++.+..-+.+.+.++.+++|++|
T Consensus 82 ~~~~~r~~~~~~G~pa~~iey~y~~~~~-g~~aq~~~~vvve~~~---v~~vv~lt~T~~~~q~~~~~~d~q~iv~sl~v 157 (161)
T 3lyd_A 82 YAERGRTETTVDGFPAYHIEYAYRHHGT-ITIAQMITLVEVSHPH---AVDIIQLTATCAGDQTADYWDTFRLMHADLTV 157 (161)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEEETTT-EEEEEEEEEEEEECSS---CEEEEEEEEEEEGGGHHHHHHHHHHHHHTCEE
T ss_pred cEeecccccccCCcccEEEEEEEecCCC-ceEeeEEEEEEEecCC---EEEEEEEEEEeccccchHHHHHHHHHhheeEe
Confidence 3222223334466 5999999877764 355 25677888776 55555 9999999999999999999999997
Q ss_pred C
Q 024710 264 I 264 (264)
Q Consensus 264 ~ 264 (264)
.
T Consensus 158 ~ 158 (161)
T 3lyd_A 158 Q 158 (161)
T ss_dssp E
T ss_pred c
Confidence 3
No 6
>3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=67.06 E-value=45 Score=30.14 Aligned_cols=43 Identities=19% Similarity=0.386 Sum_probs=31.3
Q ss_pred eeeeeCCCceEEEccCCCccC-CCCCCCcceEEEeccCCCCCceeEEEE
Q 024710 106 RVYTDELNKFEISIPQDWQLG-AGEPNGFKSITAFYPQEASSSSVSVVI 153 (264)
Q Consensus 106 ~~y~D~~dGYsf~yPs~W~~~-~G~~~g~k~Vv~F~p~~~~~eNVSVvI 153 (264)
+-|+.++-=|++.||++|... +|+.+ ..|+.+..=+-|..+.-
T Consensus 5 kk~ISPgaWfs~~yP~~W~EfEd~E~s-----flFynp~~WtGNfRISa 48 (269)
T 3hlz_A 5 KKFISPGAWFSMNYPSDWNEFEDGEGS-----FLFYNPDVWTGNFRISA 48 (269)
T ss_dssp EEEECGGGCEEEEECTTCEEECCCTTE-----EEEECSSSCCCEEEEEE
T ss_pred ceeecCCceeEEecCCCcccccCCCCc-----eeeeChhhcccceEEEe
Confidence 568899999999999999954 35432 45777666677776543
No 7
>3mtv_A NSP1B, papain-like cysteine protease; PRRSV, nuclease, hydrol; 2.80A {Porcine reproductive and respiratory svirus}
Probab=17.82 E-value=1.2e+02 Score=26.20 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=27.8
Q ss_pred ccCCceeeeeCCCc---eEEEccCCCcc-----CCCCCCCcceEEEe
Q 024710 101 ANEDLRVYTDELNK---FEISIPQDWQL-----GAGEPNGFKSITAF 139 (264)
Q Consensus 101 ~~~gf~~y~D~~dG---Ysf~yPs~W~~-----~~G~~~g~k~Vv~F 139 (264)
+..|++..+|+..- |.|-.|.+|+. ++-..+|+.++..|
T Consensus 131 QvnGLraV~~p~G~~vv~~fs~~eSWirHi~~a~ep~~pgf~~l~rf 177 (203)
T 3mtv_A 131 QVNGLRAVTDTHGPIVIQYFSVKESWIRHLKLVEEPSLPGFEDLLRI 177 (203)
T ss_dssp HTTTEEEEECTTCSEEEEEESSTTCSCEEEEETTSCCCTTEEEEEEE
T ss_pred hhcceEEEEcCCCCEEEEEeccchhhhhhhcccCCCCCCCcEEEEEE
Confidence 44699999999554 56778999993 33345788776543
No 8
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=13.71 E-value=1.7e+02 Score=25.84 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=29.4
Q ss_pred ceeEEEEEEEecCCccceeEEEEcccCchhhHHHHHHHHHhhcceee
Q 024710 217 RKHLFSAIGMASNGWYNRLYTVTGQFVEEESEKYGSNIEKAVASFRF 263 (264)
Q Consensus 217 ~RH~ls~v~V~~nG~y~kLYTltaq~~E~rw~k~~~~l~~vvdSF~v 263 (264)
.++.+.. ....+| ...|+|.+.+.|++ ..|-+.|++++++.++
T Consensus 333 ~~~~~~i-~~~~~~--~~~~~l~A~s~~ek-~~W~~~I~~ai~~~k~ 375 (377)
T 3p6a_A 333 HKAFYVL-FTWDQE--AQIYELVAQTVSER-KNWCALITETAGSLKV 375 (377)
T ss_dssp TTEEEEE-ETTCTT--CCEEEEECSSHHHH-HHHHHHHHHHHHTCCC
T ss_pred cceeEEE-ecCCCC--CeeEEEecCCHHHH-HHHHHHHHHHHHhcCC
Confidence 3555443 332233 58899999998843 5688899999998764
No 9
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=13.01 E-value=1e+02 Score=21.01 Aligned_cols=15 Identities=13% Similarity=0.213 Sum_probs=11.6
Q ss_pred ccchhHHHHHHHHHH
Q 024710 73 SRTKRREVMFQLAFT 87 (264)
Q Consensus 73 ~~~~RR~aLl~i~~a 87 (264)
...+||++|..+++.
T Consensus 7 pdm~RRqfln~l~~G 21 (49)
T 1q90_R 7 PDMNKRNIMNLILAG 21 (49)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHH
Confidence 458899999877654
No 10
>2fpn_A YWMB; structural genomocs, domain swappin structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.49A {Bacillus subtilis} SCOP: d.129.10.1
Probab=12.52 E-value=5.7e+02 Score=21.94 Aligned_cols=61 Identities=8% Similarity=0.020 Sum_probs=39.2
Q ss_pred CceEEEEEEEECCCCCceeEEEEEEE---ecCCccceeEEEEcccCchhhHHHHHH-HHHhhccee
Q 024710 201 KGFYYIEYTLQNPGESRKHLFSAIGM---ASNGWYNRLYTVTGQFVEEESEKYGSN-IEKAVASFR 262 (264)
Q Consensus 201 ~gyY~~EY~v~~p~e~~RH~ls~v~V---~~nG~y~kLYTltaq~~E~rw~k~~~~-l~~vvdSF~ 262 (264)
+..|.+.-..+.+....-+.+.++.+ ++.+.| =+|.+........|.+..+. ++++.++|.
T Consensus 58 ~~~~k~~g~~~~~~n~~~e~I~l~~~~~~~~~~sY-i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 122 (216)
T 2fpn_A 58 DKMIKAIGTYTDKKNRTSFRLQLVTTLKKHNPTSY-LLYEQMSLETPDSWNDTYEQFERETLGIFQ 122 (216)
T ss_dssp SSEEEEEEEEEETTTTEEEEEEEEEESSCSSCCEE-EEEEEEESSCCSCHHHHHHHHHHHHHHHHS
T ss_pred CceEEEEEEEcCCCCceeEEEEEEEEecCCCCceE-EEEEEeCCcchhHHHHHHHHHHHHHHHHhc
Confidence 44566666666665444566666666 334444 56777777766789887777 566776664
Done!