BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024712
(263 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 64/162 (39%), Gaps = 13/162 (8%)
Query: 58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKV---LQKQFPESKRVGRLEGILLEAKGLW 114
+L P+ ++ ++ + +D+A D + LQ FP++ L L E KG
Sbjct: 231 SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA--YCNLANALKE-KGSV 287
Query: 115 AEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE 174
AEAE Y++ L P I + QGN A+ K LE F A LA
Sbjct: 288 AEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS 347
Query: 175 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
+ ++A Y+E I PT +AD +G
Sbjct: 348 VLQQQGKLQEALMHYKEAIRISPT-------FADAYSNMGNT 382
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%)
Query: 95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEW 154
PE RLEG K W A KAY+ +++ P D + R A +FP AI
Sbjct: 136 PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIAD 195
Query: 155 LNKYLE 160
NK +E
Sbjct: 196 CNKAIE 201
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%)
Query: 101 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE 160
RLEG K W A KAY+ +++ P D + R A +FP AI NK +E
Sbjct: 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 66
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 61/141 (43%), Gaps = 12/141 (8%)
Query: 112 GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE 171
G + +A +A++ +E+N D + + + + A+ + +K LE + A+
Sbjct: 37 GDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYG 96
Query: 172 LAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV----DNILLAKKYYA 227
+YV +MYK+A +E+ + + + D+ Y LG V + LA Y
Sbjct: 97 AGNVYVVKEMYKEAKDMFEKALRA-------GMENGDLFYMLGTVLVKLEQPKLALPYLQ 149
Query: 228 STIDLT-GGKNTKALFGICLV 247
++L + FG+CL
Sbjct: 150 RAVELNENDTEARFQFGMCLA 170
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 163 MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
M+ + +E +Y++A CY++LI +QP P+ + A L LG
Sbjct: 1 MSQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLG 52
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE-TF 162
+G L +GL+ EA Y L+ P +PV + + G + AI+ + L T
Sbjct: 10 QGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69
Query: 163 MADHDAWR 170
A+H A R
Sbjct: 70 TAEHVAIR 77
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Query: 141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP 200
I + QGN A+ K LE F A LA + ++A Y+E I PT
Sbjct: 18 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-- 75
Query: 201 LYHLAYADVLYTLGGVDNILLAKKYYASTIDLT 233
+ AY+++ TL + ++ A + Y I +
Sbjct: 76 -FADAYSNMGNTLKEMQDVQGALQCYTRAIQIN 107
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 145 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL 204
QG++ AIE+ K LE + + +AW L Y Y +A Y++ + P
Sbjct: 22 QGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNN----- 76
Query: 205 AYADVLYTLGGV 216
A+ Y LG
Sbjct: 77 --AEAWYNLGNA 86
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 145 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT 198
QG++ AIE+ K LE + + +AW L Y Y +A Y++ + P
Sbjct: 56 QGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 109
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 111 KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA---QGNFPTAIEWLNKYLETFMADHD 167
+G + EA + Y LE LDP + + A QG++ AIE+ K LE + +
Sbjct: 22 QGDYDEAIEYYQKALE---LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 78
Query: 168 AWRELAEIYVSLQMYKQAAFCYEELILSQPT 198
AW L Y Y +A Y++ + P
Sbjct: 79 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
Query: 145 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL 204
QG++ AIE+ K LE + +AW L Y Y +A Y++ + P
Sbjct: 22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWY 81
Query: 205 AYADVLYTLGGVDNILLAKKYYASTIDL 232
+ Y G D + +YY ++L
Sbjct: 82 NLGNAYYKQGDYDEAI---EYYQKALEL 106
>pdb|3BC9|A Chain A, Alpha-Amylase B In Complex With Acarbose
pdb|3BCD|A Chain A, Alpha-Amylase B In Complex With Maltotetraose And
Alpha-Cyclodextrin
pdb|3BCF|A Chain A, Alpha-Amylase B From Halothermothrix Orenii
Length = 599
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 161 TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL 220
TF+ +HD R+ VS+ K A+ Y ++ VP + + G+D +L
Sbjct: 441 TFVDNHDTDRDEGSYTVSIYSRKYQAYAY--ILTRAEGVPTVYWKDYYIWEMKEGLDKLL 498
Query: 221 LAKKYYA 227
A++YYA
Sbjct: 499 TARRYYA 505
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 77/174 (44%), Gaps = 18/174 (10%)
Query: 29 CLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIK 88
C +K+ + R+ L+ + ND + + TLY Q+ + L ++C+K
Sbjct: 186 CFIKEGEPRKAISDLKAASKLKND---NTEAFYKISTLYYQLGDHEL---SLSEVRECLK 239
Query: 89 VLQKQ---FPESKRVGRLEGILLEAK-----GLWAEAEKAYSSLLEDNPLDP---VLHKR 137
+ Q F K+V +L ++ A+ G + +A Y S+++ P V K
Sbjct: 240 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKE 299
Query: 138 RVAIAKAQGNFPT-AIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYE 190
R+ ++ P AI ++ L+ + +A ++ AE Y+ +MY +A YE
Sbjct: 300 RICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYE 353
>pdb|3U4T|A Chain A, Crystal Structure Of The C-Terminal Part Of The Tpr
Repeat-Containing Protein Q11ti6_cyth3 From Cytophaga
Hutchinsonii. Northeast Structural Genomics Consortium
Target Chr11b.
pdb|3U4T|B Chain B, Crystal Structure Of The C-Terminal Part Of The Tpr
Repeat-Containing Protein Q11ti6_cyth3 From Cytophaga
Hutchinsonii. Northeast Structural Genomics Consortium
Target Chr11b
Length = 272
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 31/60 (51%)
Query: 145 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL 204
+GNFP AI++ K + D + EL + Y + Y +A + +++ +P + + +L
Sbjct: 121 KGNFPLAIQYXEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYL 180
>pdb|1Q2X|A Chain A, Crystal Structure Of The E243d Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Substrate Aspartate Semialdehyde
pdb|1Q2X|B Chain B, Crystal Structure Of The E243d Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Substrate Aspartate Semialdehyde
Length = 371
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 12/68 (17%)
Query: 118 EKAYSSLLEDNPLDPVLHKRRVAIAKAQG-NFPTA----------IEWLNKYLETFMADH 166
E+A SS L+D P +L R AK + NFPT I W++K L
Sbjct: 184 EQAVSSELKD-PASSILDIERKVTAKMRADNFPTDNFGAALGGSLIPWIDKLLPETGQTK 242
Query: 167 DAWRELAE 174
D W+ AE
Sbjct: 243 DEWKGYAE 250
>pdb|1PU2|A Chain A, Crystal Structure Of The K246r Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Length = 371
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 12/68 (17%)
Query: 118 EKAYSSLLEDNPLDPVLHKRRVAIAKAQG-NFPT----------AIEWLNKYLETFMADH 166
E+A SS L+D P +L R AK + NFPT I W++K L
Sbjct: 184 EQAVSSELKD-PASSILDIERKVTAKMRADNFPTDNFGAALGGSLIPWIDKLLPETGQTK 242
Query: 167 DAWRELAE 174
+ WR AE
Sbjct: 243 EEWRGYAE 250
>pdb|2EXR|A Chain A, X-Ray Structure Of Cytokinin OxidaseDEHYDROGENASE (CKX)
FROM Arabidopsis Thaliana At5g21482
pdb|2Q4W|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Cytokinin OxidaseDEHYDROGENASE (CKX) FROM ARABIDOPSIS
THALIANA AT5G21482
Length = 524
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 98 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK 157
KRV RL G L +GL E + Y L + KR IAK G + T WLN
Sbjct: 333 KRVERLIGRLRFNEGLRFEVDLPYVDFL-------LRVKRSEEIAKENGTWETPHPWLNL 385
Query: 158 YL 159
++
Sbjct: 386 FV 387
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 13/109 (11%)
Query: 111 KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA---QGNFPTAIEWLNKYLETFMADHD 167
+G + EA + Y LE LDP + + A QG++ AIE+ K LE +
Sbjct: 14 QGDYDEAIEYYQKALE---LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 70
Query: 168 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
AW L Y Y +A Y++ + P A+ Y LG
Sbjct: 71 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS-------AEAWYNLGNA 112
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 9/119 (7%)
Query: 85 DCIKVLQKQF---PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI 141
+ I+ QK P S G +G + EA + Y LE LDP + +
Sbjct: 19 EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE---LDPRSAEAWYNL 75
Query: 142 AKA---QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 197
A QG++ AIE+ K LE +AW L Y Y +A Y++ + P
Sbjct: 76 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 145 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT 198
QG++ AIE+ K LE + +AW L Y Y +A Y++ + P
Sbjct: 22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 145 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT 198
QG++ AIE+ K LE + AW L Y Y++A Y++ + P
Sbjct: 22 QGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPN 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,911,580
Number of Sequences: 62578
Number of extensions: 313758
Number of successful extensions: 915
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 880
Number of HSP's gapped (non-prelim): 46
length of query: 263
length of database: 14,973,337
effective HSP length: 97
effective length of query: 166
effective length of database: 8,903,271
effective search space: 1477942986
effective search space used: 1477942986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)