BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024712
(263 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6TGY8|EMC2_DANRE ER membrane protein complex subunit 2 OS=Danio rerio GN=emc2 PE=2
SV=1
Length = 297
Score = 185 bits (470), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 140/216 (64%), Gaps = 5/216 (2%)
Query: 37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
R ++++ G ++N+ S LG D+W +YEQV IAA+DC D+A C++ L++QFP+
Sbjct: 28 RNSEQIVDVGEELINEHA--SKLGDDIWIIYEQVMIAALDCSRDDLAWSCLQELKRQFPD 85
Query: 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
S RV RL G+ LEA + +A K Y S+L+D+P + KR++ I +AQG AI LN
Sbjct: 86 SHRVKRLAGMRLEALERYDDANKLYDSILQDDPTNTAARKRKICILRAQGKSSEAIRELN 145
Query: 157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
+YLE F+ D +AW EL+E+Y++ Y +AAFC EEL+++ P LY YA+V YT GG+
Sbjct: 146 EYLEQFVGDQEAWHELSELYINEHDYAKAAFCLEELMMTNPHNHLYCEQYAEVKYTQGGL 205
Query: 217 DNILLAKKYYASTIDLTGGKNTKALFGICLVMFVCH 252
+N+ LA+KY+A + L +N +ALFG L M H
Sbjct: 206 ENLELARKYFAQALKL-NNRNMRALFG--LYMSASH 238
>sp|Q6INS3|EMC2A_XENLA ER membrane protein complex subunit 2-A OS=Xenopus laevis GN=emc2-a
PE=2 SV=1
Length = 297
Score = 182 bits (461), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 90/210 (42%), Positives = 135/210 (64%), Gaps = 3/210 (1%)
Query: 37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
R + V+ G ++N+ S LG D+W +YEQV IAA+DC D+A C++ L++QFP
Sbjct: 28 RNSEHVIEVGEELINEHA--SKLGDDIWIIYEQVMIAALDCGRDDIAMSCLQELRRQFPG 85
Query: 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
S RV RL G+ EA + +A + Y +L+D+P + KR++AI KAQG AI LN
Sbjct: 86 SHRVKRLTGLRFEAMERYDDALQIYDRILQDDPTNTAARKRKIAIRKAQGRNSEAIRELN 145
Query: 157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
+YLE F+ D +AW ELAE+Y++ Y +AAFC EELIL+ P Y+ +A+V YT GG+
Sbjct: 146 EYLEQFVGDQEAWHELAELYINELDYAKAAFCLEELILTNPHNHFYYQQFAEVKYTQGGL 205
Query: 217 DNILLAKKYYASTIDLTGGKNTKALFGICL 246
+N+ L++KY++ + L N +ALFG+ +
Sbjct: 206 ENLELSRKYFSQALKL-NNHNMRALFGLYI 234
>sp|Q5M7J9|EMC2_XENTR ER membrane protein complex subunit 2 OS=Xenopus tropicalis GN=emc2
PE=2 SV=1
Length = 297
Score = 182 bits (461), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 90/210 (42%), Positives = 135/210 (64%), Gaps = 3/210 (1%)
Query: 37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
R + V+ G ++N+ S LG D+W +YEQV IAA+DC D+A C++ L++QFP
Sbjct: 28 RNSEHVIEVGEELINEHA--SKLGDDIWIIYEQVMIAALDCGRDDIAMSCLQELRRQFPG 85
Query: 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
S RV RL G+ EA + +A + Y +L+D+P + KR++AI KAQG AI LN
Sbjct: 86 SHRVKRLTGLRFEAMERYDDALQIYDRILQDDPTNTAARKRKIAIRKAQGRNAEAIRELN 145
Query: 157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
+YLE F+ D +AW ELAE+Y++ Y +AAFC EELIL+ P Y+ +A+V YT GG+
Sbjct: 146 EYLEQFVGDQEAWHELAELYINELDYAKAAFCLEELILTNPHNHFYYQQFAEVKYTQGGL 205
Query: 217 DNILLAKKYYASTIDLTGGKNTKALFGICL 246
+N+ L++KY++ + L N +ALFG+ +
Sbjct: 206 ENLELSRKYFSQALKL-NNHNMRALFGLYI 234
>sp|Q8AVU9|EMC2B_XENLA ER membrane protein complex subunit 2-B OS=Xenopus laevis GN=emc2-b
PE=2 SV=1
Length = 297
Score = 179 bits (455), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 136/210 (64%), Gaps = 3/210 (1%)
Query: 37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
R ++++ G ++N+ S LG DVW +YEQV IAA+DC D+A C++ L++QFP
Sbjct: 28 RNSEQIVDVGEELINEHA--SKLGDDVWIIYEQVMIAALDCGRDDIAMSCLQELRRQFPG 85
Query: 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
S RV RL G+ EA + +A + Y +L+D+P + KR++AI KAQG AI LN
Sbjct: 86 SHRVKRLTGLRFEAMERYDDALQIYDRILQDDPTNTATRKRKIAIRKAQGRNAEAIRELN 145
Query: 157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
+YLE F+ D +AW ELAE+Y++ Y +AAFC EELIL+ P Y+ +A+V YT GG+
Sbjct: 146 EYLEQFVGDQEAWHELAELYINELDYAKAAFCLEELILTNPHNHFYYQQFAEVKYTQGGL 205
Query: 217 DNILLAKKYYASTIDLTGGKNTKALFGICL 246
+N+ L++KY++ + L + +ALFG+ +
Sbjct: 206 ENLELSRKYFSQALKL-NNHSMRALFGLYM 234
>sp|B0BNG0|EMC2_RAT ER membrane protein complex subunit 2 OS=Rattus norvegicus GN=Emc2
PE=2 SV=1
Length = 297
Score = 176 bits (447), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 93/223 (41%), Positives = 140/223 (62%), Gaps = 5/223 (2%)
Query: 37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
R ++++ G ++ND S LG D+W +YEQV IAA+D D+A C++ L++QFP
Sbjct: 28 RNSEQIMEVGEELINDYA--SKLGDDIWIIYEQVMIAALDYGRDDLALFCLQELRRQFPG 85
Query: 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
S RV RL G+ EA + +A + Y +L+++P + KR++AI KAQG AI LN
Sbjct: 86 SHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGKNVEAIRELN 145
Query: 157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
+YLE F+ D +AW ELAE+Y++ Y +AAFC EEL+++ P LY YA+V YT GG+
Sbjct: 146 EYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPHNHLYCQQYAEVKYTQGGL 205
Query: 217 DNILLAKKYYASTIDLTGGKNTKALFGICLVMFVCHSTTYERA 259
+N+ L++KY+A + L +N +ALFG L M H + +A
Sbjct: 206 ENLELSRKYFAQALKLN-NRNMRALFG--LYMSASHIASNPKA 245
>sp|Q9CRD2|EMC2_MOUSE ER membrane protein complex subunit 2 OS=Mus musculus GN=Emc2 PE=2
SV=1
Length = 297
Score = 176 bits (447), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 92/216 (42%), Positives = 137/216 (63%), Gaps = 5/216 (2%)
Query: 37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
R ++++ G ++ND S LG D+W +YEQV IAA+D D+A C++ L++QFP
Sbjct: 28 RNSEQIMEVGEELINDYA--SKLGDDIWIIYEQVMIAALDYGRDDLALFCLQELRRQFPG 85
Query: 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
S RV RL G+ EA + +A + Y +L+++P + KR++AI KAQG AI LN
Sbjct: 86 SHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGKTVEAIRELN 145
Query: 157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
+YLE F+ D +AW ELAE+Y++ Y +AAFC EEL+++ P LY YA+V YT GG+
Sbjct: 146 EYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPHNHLYCQQYAEVKYTQGGL 205
Query: 217 DNILLAKKYYASTIDLTGGKNTKALFGICLVMFVCH 252
+N+ L++KY+A + L +N +ALFG L M H
Sbjct: 206 ENLELSRKYFAQALKL-NNRNMRALFG--LYMSASH 238
>sp|Q15006|EMC2_HUMAN ER membrane protein complex subunit 2 OS=Homo sapiens GN=EMC2 PE=1
SV=1
Length = 297
Score = 174 bits (441), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 91/216 (42%), Positives = 137/216 (63%), Gaps = 5/216 (2%)
Query: 37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
R ++++ G ++N+ S LG D+W +YEQV IAA+D D+A C++ L++QFP
Sbjct: 28 RNSEQIVEVGEELINEYA--SKLGDDIWIIYEQVMIAALDYGRDDLALFCLQELRRQFPG 85
Query: 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
S RV RL G+ EA + +A + Y +L+++P + KR++AI KAQG AI LN
Sbjct: 86 SHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGKNVEAIRELN 145
Query: 157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
+YLE F+ D +AW ELAE+Y++ Y +AAFC EEL+++ P LY YA+V YT GG+
Sbjct: 146 EYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPHNHLYCQQYAEVKYTQGGL 205
Query: 217 DNILLAKKYYASTIDLTGGKNTKALFGICLVMFVCH 252
+N+ L++KY+A + L +N +ALFG L M H
Sbjct: 206 ENLELSRKYFAQALKL-NNRNMRALFG--LYMSASH 238
>sp|Q5R882|EMC2_PONAB ER membrane protein complex subunit 2 OS=Pongo abelii GN=EMC2 PE=2
SV=1
Length = 297
Score = 174 bits (440), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 92/223 (41%), Positives = 140/223 (62%), Gaps = 5/223 (2%)
Query: 37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
R ++++ G ++N+ S LG D+W +YEQV IAA+D D+A C++ L++QFP
Sbjct: 28 RNSEQIVEVGEELINEYG--SKLGDDIWIIYEQVMIAALDYGRDDLALFCLQELRRQFPG 85
Query: 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
S RV RL G+ EA + +A + Y +L+++P + KR++AI KAQG AI LN
Sbjct: 86 SHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGKNVEAIRELN 145
Query: 157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
+YLE F+ D +AW ELAE+Y++ Y +AAFC EEL+++ P LY YA+V YT GG+
Sbjct: 146 EYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPHNHLYCQQYAEVKYTQGGL 205
Query: 217 DNILLAKKYYASTIDLTGGKNTKALFGICLVMFVCHSTTYERA 259
+N+ L++KY+A + L +N +ALFG L M H + +A
Sbjct: 206 ENLELSRKYFAQALKL-NNRNMRALFG--LYMSASHIASNPKA 245
>sp|Q5E993|EMC2_BOVIN ER membrane protein complex subunit 2 OS=Bos taurus GN=EMC2 PE=2
SV=1
Length = 297
Score = 171 bits (434), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 137/216 (63%), Gaps = 5/216 (2%)
Query: 37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE 96
R ++++ G ++++ S LG D+W +YEQV IAA+D D+A C++ L++QFP
Sbjct: 28 RNSEQIVEVGEELISEYA--SKLGDDIWIIYEQVMIAALDYGRDDLALFCLQELRRQFPG 85
Query: 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156
S RV RL G+ EA + +A + Y +L+++P + KR++AI KAQG AI LN
Sbjct: 86 SHRVKRLTGMRFEAMERYDDAIQLYDRILQEDPTNTAARKRKIAIRKAQGKNVEAIRELN 145
Query: 157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216
+YLE F+ D +AW ELAE+Y++ Y +AAFC EEL+++ P LY YA+V YT GG+
Sbjct: 146 EYLEQFVGDQEAWHELAELYINEHDYAKAAFCLEELMMTNPYNHLYCQQYAEVKYTQGGL 205
Query: 217 DNILLAKKYYASTIDLTGGKNTKALFGICLVMFVCH 252
+N+ L++KY+A + L +N +ALFG L M H
Sbjct: 206 ENLELSRKYFAQALKL-NNRNMRALFG--LYMSASH 238
>sp|Q86K48|EMC2_DICDI ER membrane protein complex subunit 2 OS=Dictyostelium discoideum
GN=emc2 PE=3 SV=1
Length = 322
Score = 131 bits (330), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 132/242 (54%), Gaps = 11/242 (4%)
Query: 1 MVTKTEETQLNRLENQVDNGGGG-AW----EYLCLVKKLKVRRPDKVLRHGLSILND--P 53
M+T ++ ++NR E + N G W + L ++K K+R+ + V ++GL ++
Sbjct: 6 MLTSSDSIEINRYEEGIRNSGRSFNWVLVRDTLRFLRKSKIRKSNLVSKYGLKLVTQYFN 65
Query: 54 KKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF-PESKRVGRLEGILLEAKG 112
K G D EQV +A +DC K + L+ +F +S RV R+ + LE+
Sbjct: 66 KLEDQEGYDT---IEQVIVACLDCGDHTNPKKLFEQLKSKFGKDSVRVQRIHALCLESNN 122
Query: 113 LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWREL 172
AEA + + S+L+ P D + KR+VAI K QGN AI+ LN YL+ +M D +AW EL
Sbjct: 123 QLAEALQIFESILKKYPSDALSMKRQVAIFKGQGNLSKAIQVLNAYLQIYMCDLEAWLEL 182
Query: 173 AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232
+ ++S Y A +C EE++L+ P ++++ YA+ LY LGG +N A +YY ++L
Sbjct: 183 SSFHISYLSYSTALYCLEEVLLNAPINFVFYIKYAEPLYCLGGNENYNSAVQYYTHALEL 242
Query: 233 TG 234
Sbjct: 243 NS 244
>sp|O60110|OCA3_SCHPO TPR repeat protein oca3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=oca3 PE=4 SV=3
Length = 282
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 113/202 (55%), Gaps = 5/202 (2%)
Query: 36 VRRPDKVLRHGLSILNDPKKRSALGP---DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQK 92
++ PD+ + +++ + + + LG ++W +Y++V IAA+ +AK C L
Sbjct: 6 LKVPDQNPQEIVALFSQQEAYAKLGKYKDEIWDVYQKVFIAALTTGETVLAKKCWNRLND 65
Query: 93 QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAI 152
+F +S RV L G+ LEA +A Y+S L ++P V++KR++A+ ++ G I
Sbjct: 66 RFHKSPRVEGLYGMFLEATASEKDAMSYYNSKLSEDPTHTVIYKRKLALLRSMGQTKECI 125
Query: 153 EWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT 212
+ L YL+TF D +AW ELA+IYVS++ ++ A FCYEE++L QP P D+ +
Sbjct: 126 QGLINYLDTFYNDLEAWAELADIYVSVEAFESAIFCYEEMVLLQPFEPRLFARLGDLYFV 185
Query: 213 LG--GVDNILLAKKYYASTIDL 232
L N + K+Y ++++
Sbjct: 186 LAQSNATNYWFSLKHYCRSVEI 207
>sp|Q9ULT0|TTC7A_HUMAN Tetratricopeptide repeat protein 7A OS=Homo sapiens GN=TTC7A PE=1
SV=3
Length = 858
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 74/168 (44%), Gaps = 10/168 (5%)
Query: 43 LRHGLSILNDPKKRSALGP-DVWTLYEQVSIAA----MDCQCLDVAKDCIKVLQKQFPES 97
L +S L P GP +WT EQ+ + A M+ Q L A CI+ FP S
Sbjct: 685 LEEAMSELTMPSSVLKQGPMQLWTTLEQIWLQAAELFMEQQHLKEAGFCIQEAAGLFPTS 744
Query: 98 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD-PVLHKRRVAIAKAQGNFPTAIEWLN 156
V + G L E KG EA++ Y L NP ++H + +++ G+ A + L
Sbjct: 745 HSVLYMRGRLAEVKGNLEEAKQLYKEALTVNPDGVRIMHSLGLMLSRL-GHKSLAQKVLR 803
Query: 157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCY---EELILSQPTVPL 201
+E H+AW+ L E+ + + A C+ EL S P +P
Sbjct: 804 DAVERQSTCHEAWQGLGEVLQAQGQNEAAVDCFLTALELEASSPVLPF 851
>sp|Q8BGB2|TTC7A_MOUSE Tetratricopeptide repeat protein 7A OS=Mus musculus GN=Ttc7a PE=1
SV=1
Length = 858
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 70/155 (45%), Gaps = 10/155 (6%)
Query: 60 GP-DVWTLYEQVSIAA----MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLW 114
GP +WT EQ+ + A M+ + L A CI+ FP S V + G L E KG +
Sbjct: 702 GPMQLWTTLEQIWLQAAELFMEQRQLKEAGFCIQEAAGLFPTSHSVLYMRGRLAEVKGSF 761
Query: 115 AEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ-GNFPTAIEWLNKYLETFMADHDAWRELA 173
EA++ Y L NP D V + + +Q G+ A + L +E H+AW+ L
Sbjct: 762 EEAKQLYKEALTVNP-DGVRIMHSLGLMLSQLGHKSLAQKVLRDAVERQSTFHEAWQGLG 820
Query: 174 EIYVSLQMYKQAAFCY---EELILSQPTVPLYHLA 205
E+ + A C+ EL S P +P +A
Sbjct: 821 EVLQDQGQNEAAVDCFLTALELEASSPVLPFSIIA 855
>sp|Q6PD62|CTR9_HUMAN RNA polymerase-associated protein CTR9 homolog OS=Homo sapiens
GN=CTR9 PE=1 SV=1
Length = 1173
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 107 LLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH 166
L EA + EAEK Y ++L ++P + R A+A+ +GNF A +W + L+
Sbjct: 506 LYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHP 565
Query: 167 DAWRELAEIYVSLQMYKQAAFCYEELILSQPTV 199
DAW + ++++ Q + +E IL QP+
Sbjct: 566 DAWSLIGNLHLAKQEWGPGQKKFER-ILKQPST 597
>sp|Q62018|CTR9_MOUSE RNA polymerase-associated protein CTR9 homolog OS=Mus musculus
GN=Ctr9 PE=1 SV=2
Length = 1173
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Query: 107 LLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH 166
L EA + EAEK Y ++L ++P + R A+A+ +GNF A +W + L+
Sbjct: 506 LYEAMCEFHEAEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHP 565
Query: 167 DAWRELAEIYVSLQMYKQAAFCYEELILSQPTV 199
DAW + ++++ Q + +E IL QP
Sbjct: 566 DAWSLIGNLHLAKQEWGPGQKKFER-ILKQPAT 597
>sp|P56558|OGT1_RAT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110 kDa subunit OS=Rattus norvegicus GN=Ogt PE=1 SV=1
Length = 1036
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 75/179 (41%), Gaps = 9/179 (5%)
Query: 58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKV---LQKQFPESKRVGRLEGILLEAKGLW 114
+L P+ ++ ++ + +D+A D + LQ FP++ L L E KG
Sbjct: 243 SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA--YCNLANALKE-KGSV 299
Query: 115 AEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE 174
AEAE Y++ L P I + QGN A+ K LE F A LA
Sbjct: 300 AEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS 359
Query: 175 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT 233
+ ++A Y+E I PT + AY+++ TL + ++ A + Y I +
Sbjct: 360 VLQQQGKLQEALMHYKEAIRISPT---FADAYSNMGNTLKEMQDVQGALQCYTRAIQIN 415
>sp|Q27HV0|OGT1_PIG UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110 kDa subunit OS=Sus scrofa GN=OGT PE=2 SV=1
Length = 1046
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 75/179 (41%), Gaps = 9/179 (5%)
Query: 58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKV---LQKQFPESKRVGRLEGILLEAKGLW 114
+L P+ ++ ++ + +D+A D + LQ FP++ L L E KG
Sbjct: 253 SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA--YCNLANALKE-KGSV 309
Query: 115 AEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE 174
AEAE Y++ L P I + QGN A+ K LE F A LA
Sbjct: 310 AEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS 369
Query: 175 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT 233
+ ++A Y+E I PT + AY+++ TL + ++ A + Y I +
Sbjct: 370 VLQQQGKLQEALMHYKEAIRISPT---FADAYSNMGNTLKEMQDVQGALQCYTRAIQIN 425
>sp|P81436|OGT1_RABIT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110 kDa subunit OS=Oryctolagus cuniculus GN=OGT PE=1
SV=2
Length = 1046
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 75/179 (41%), Gaps = 9/179 (5%)
Query: 58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKV---LQKQFPESKRVGRLEGILLEAKGLW 114
+L P+ ++ ++ + +D+A D + LQ FP++ L L E KG
Sbjct: 253 SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA--YCNLANALKE-KGSV 309
Query: 115 AEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE 174
AEAE Y++ L P I + QGN A+ K LE F A LA
Sbjct: 310 AEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS 369
Query: 175 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT 233
+ ++A Y+E I PT + AY+++ TL + ++ A + Y I +
Sbjct: 370 VLQQQGKLQEALMHYKEAIRISPT---FADAYSNMGNTLKEMQDVQGALQCYTRAIQIN 425
>sp|O15294|OGT1_HUMAN UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110 kDa subunit OS=Homo sapiens GN=OGT PE=1 SV=3
Length = 1046
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 75/179 (41%), Gaps = 9/179 (5%)
Query: 58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKV---LQKQFPESKRVGRLEGILLEAKGLW 114
+L P+ ++ ++ + +D+A D + LQ FP++ L L E KG
Sbjct: 253 SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA--YCNLANALKE-KGSV 309
Query: 115 AEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE 174
AEAE Y++ L P I + QGN A+ K LE F A LA
Sbjct: 310 AEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS 369
Query: 175 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT 233
+ ++A Y+E I PT + AY+++ TL + ++ A + Y I +
Sbjct: 370 VLQQQGKLQEALMHYKEAIRISPT---FADAYSNMGNTLKEMQDVQGALQCYTRAIQIN 425
>sp|Q8CGY8|OGT1_MOUSE UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110 kDa subunit OS=Mus musculus GN=Ogt PE=1 SV=2
Length = 1046
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 75/179 (41%), Gaps = 9/179 (5%)
Query: 58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKV---LQKQFPESKRVGRLEGILLEAKGLW 114
+L P+ ++ ++ + +D+A D + LQ FP++ L L E KG
Sbjct: 253 SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA--YCNLANALKE-KGSV 309
Query: 115 AEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE 174
AEAE Y++ L P I + QGN A+ K LE F A LA
Sbjct: 310 AEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS 369
Query: 175 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT 233
+ ++A Y+E I PT + AY+++ TL + ++ A + Y I +
Sbjct: 370 VLQQQGKLQEALMHYKEAIRISPT---FADAYSNMGNTLKEMQDVQGALQCYTRAIQIN 425
>sp|Q6DEU9|CTR9_XENTR RNA polymerase-associated protein CTR9 homolog OS=Xenopus
tropicalis GN=ctr9 PE=2 SV=1
Length = 1172
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 114 WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELA 173
+ E+EK Y ++L ++P + R A+A+ +GNF A +W + L+ DAW +
Sbjct: 513 FHESEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIG 572
Query: 174 EIYVSLQMYKQAAFCYEELILSQPTV 199
++++ Q + +E IL QP+
Sbjct: 573 NLHLAKQEWGPGQKKFER-ILKQPST 597
>sp|Q4QR29|CTR9_XENLA RNA polymerase-associated protein CTR9 homolog OS=Xenopus laevis
GN=ctr9 PE=2 SV=1
Length = 1157
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 114 WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELA 173
+ E+EK Y ++L ++P + R A+A+ +GNF A +W + L+ DAW +
Sbjct: 513 FHESEKLYKNILREHPNYVDCYLRLGAMARDKGNFYEASDWFKEALQINQDHPDAWSLIG 572
Query: 174 EIYVSLQMYKQAAFCYEELILSQPTV 199
++++ Q + +E IL QP+
Sbjct: 573 NLHLAKQEWGPGQKKFER-ILKQPST 597
>sp|B3PCM8|RSMH_CELJU Ribosomal RNA small subunit methyltransferase H OS=Cellvibrio
japonicus (strain Ueda107) GN=rsmH PE=3 SV=1
Length = 309
Score = 39.3 bits (90), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 58/129 (44%), Gaps = 23/129 (17%)
Query: 82 VAKDCIKVLQKQFPESKRVGRLEGILLE---AKGLWAEAEKAYSSLLEDNPLDPVLHKRR 138
+A D L+ E VGR++GILL+ + EAE+ + S ++D PLD + + R
Sbjct: 75 IAHDSFASLKNLAAERGLVGRVQGILLDLGVSSPQLDEAERGF-SFMQDGPLDMRMDQTR 133
Query: 139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAW--RELAEIYVSLQMYKQAAFCYEELILSQ 196
P+A EW+N E D AW RE E + +M + A E +
Sbjct: 134 ---------GPSAAEWVNTASE----DEIAWVLREYGEERFAKRMAR--AIIAER--QKR 176
Query: 197 PTVPLYHLA 205
P V HLA
Sbjct: 177 PFVRTGHLA 185
>sp|Q57711|Y941_METJA TPR repeat-containing protein MJ0941 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0941 PE=4 SV=3
Length = 338
Score = 37.7 bits (86), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 8/140 (5%)
Query: 95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLED---NPLDPVLHKRRVAIAKAQGNFPTA 151
P K L+G+LL+ G + EA + + L+++ +D + H V++ A + A
Sbjct: 196 PHDKNALYLKGVLLKRMGKFREALECFKKLIDELNVKWIDAIRHA--VSLMLALDDLKDA 253
Query: 152 IEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY 211
++N LE D W E+Y L +A CYE++I QP L+ A +
Sbjct: 254 ERYINIGLEIRKDDVALWYFKGELYERLGKLDEALKCYEKVIELQPHYIKALLSKARIYE 313
Query: 212 TLGGVDNILLAKKYYASTID 231
G NI A +YY ++
Sbjct: 314 RQG---NIEAAIEYYNKAVE 330
Score = 35.4 bits (80), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 103 LEGILLEAKGLWAEAEKAYSSLLEDNP--LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE 160
+G L E G EA K Y ++E P + +L K R I + QGN AIE+ NK +E
Sbjct: 273 FKGELYERLGKLDEALKCYEKVIELQPHYIKALLSKAR--IYERQGNIEAAIEYYNKAVE 330
Query: 161 TFMADH 166
DH
Sbjct: 331 NIHKDH 336
>sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide
N-acetylglucosaminyltransferase SEC OS=Arabidopsis
thaliana GN=SEC PE=2 SV=1
Length = 977
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 3/126 (2%)
Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164
G L++A+GL EA Y + P + + G+ A+++ + ++ A
Sbjct: 196 GNLMKAQGLIHEAYSCYLEAVRIQPTFAIAWSNLAGLFMESGDLNRALQYYKEAVKLKPA 255
Query: 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 224
DA+ L +Y +L +A CY+ + +P + A + Y G +D LA +
Sbjct: 256 FPDAYLNLGNVYKALGRPTEAIMCYQHALQMRPNSAMAFGNIASIYYEQGQLD---LAIR 312
Query: 225 YYASTI 230
+Y +
Sbjct: 313 HYKQAL 318
>sp|Q9Y5Q9|TF3C3_HUMAN General transcription factor 3C polypeptide 3 OS=Homo sapiens
GN=GTF3C3 PE=1 SV=1
Length = 886
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Query: 84 KDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLL-----EDNPLDPVLHKRR 138
++ K+++++ P SK L G++ EA +A E+ + L+ PL
Sbjct: 130 RETKKMMKEKRPRSKLPRALRGLMGEANIRFARGEREEAILMCMEIIRQAPLAYEPFSTL 189
Query: 139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT 198
I + QG+ ++++ +D + W LAE+ + KQA FCY + + +PT
Sbjct: 190 AMIYEDQGDMEKSLQFELIAAHLNPSDTEEWVRLAEMSLEQDNIKQAIFCYTKALKYEPT 249
>sp|P15705|STI1_YEAST Heat shock protein STI1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=STI1 PE=1 SV=1
Length = 589
Score = 36.2 bits (82), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%)
Query: 95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEW 154
PE RLEG K W A KAY+ +++ P D + R A +FP AI
Sbjct: 393 PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIAD 452
Query: 155 LNKYLE 160
NK +E
Sbjct: 453 CNKAIE 458
>sp|O06917|Y263_METJA TPR repeat-containing protein MJ0263 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0263 PE=4 SV=1
Length = 320
Score = 36.2 bits (82), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 51/114 (44%)
Query: 80 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV 139
LD A DC+ + + L+G +L+ G EA A + N ++K
Sbjct: 164 LDEALDCVNKILSIKKDDAHAWYLKGRILKKLGNIKEALDALKMAINLNENLVHVYKDIA 223
Query: 140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELI 193
+ A N+ A+ ++ KYLE F D +A LA IY +L A Y+++I
Sbjct: 224 YLELANNNYEEALNYITKYLEKFPNDVEAKFYLALIYENLNKVDDALKIYDKII 277
>sp|Q6DCD5|TMTC2_XENLA Transmembrane and TPR repeat-containing protein 2 OS=Xenopus laevis
GN=tmtc2 PE=2 SV=1
Length = 836
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 19/147 (12%)
Query: 105 GILLEAKGLWAEAEKAY---SSLLEDNPLDPVLHKRRVA--------IAKAQGNFPTAI- 152
GI+L +G EA + + S + ++N DP HK V + QG + A+
Sbjct: 568 GIILMNQGRTEEARRTFLKCSEIPDENLKDPNAHKSSVTSCLYNLGKLYHEQGQYEDALI 627
Query: 153 ---EWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV 209
E + K F + + + E Y+ L + +A Y E + S+P HL Y +
Sbjct: 628 VYKEAIQKMPRQF-SPQSLYNMMGEAYMRLNVVSEAEHWYTESLKSKPDHIPAHLTYGKL 686
Query: 210 LYTLGGVDNILLAKKYYASTIDLTGGK 236
L TL G N A++Y+ I L K
Sbjct: 687 L-TLTGRKN--EAERYFLKAIQLDPNK 710
>sp|A7YE96|TT30A_DANRE Tetratricopeptide repeat protein 30A OS=Danio rerio GN=ttc30a PE=2
SV=2
Length = 651
Score = 35.0 bits (79), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 30/67 (44%)
Query: 145 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL 204
+G + AI L+K + A L Y +Q + AA CYE+L P V Y L
Sbjct: 21 EGRYGDAIHILSKEHQKHTKSRAALSLLGYCYYHMQDFTNAAECYEQLTQLHPEVEDYKL 80
Query: 205 AYADVLY 211
YA LY
Sbjct: 81 YYAQSLY 87
>sp|Q9FJW6|PP451_ARATH Pentatricopeptide repeat-containing protein At5g67570,
chloroplastic OS=Arabidopsis thaliana GN=DG1 PE=1 SV=2
Length = 798
Score = 34.7 bits (78), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 8/103 (7%)
Query: 105 GILLEAK--GLWAEAEKAYSSLLEDNPL-DPVLHKRRVAIAKAQGNFPTAIEWLNKY-LE 160
+L+EA G W+ E A+ ++LED + P+ + A A+G+F AI +N L
Sbjct: 594 SMLIEASRAGKWSLLEHAFDAVLEDGEIPHPLFFTELLCHATAKGDFQRAITLINTVALA 653
Query: 161 TFMADHDAWRELAEIY----VSLQMYKQAAFCYEELILSQPTV 199
+F + W +L E + ++K + E +S+PTV
Sbjct: 654 SFQISEEEWTDLFEEHQDWLTQDNLHKLSDHLIECDYVSEPTV 696
>sp|Q6DFB8|TTC37_XENLA Tetratricopeptide repeat protein 37 OS=Xenopus laevis GN=ttc37 PE=2
SV=1
Length = 1564
Score = 34.3 bits (77), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEE 191
++AQ + P +E L K + + H+AW LAE+Y SL M A CY +
Sbjct: 1377 SQAQISEPV-LEELKKTVLSNFTSHNAWHWLAEVYQSLGMMMDAEMCYRK 1425
>sp|Q6C186|CLF1_YARLI Pre-mRNA-splicing factor CLF1 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=CLF1 PE=3 SV=1
Length = 676
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 11/133 (8%)
Query: 113 LWAEAEKAYSSLLEDNPL----------DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF 162
LWA+ E + +L E + P L+K +A+ F + +KY+E F
Sbjct: 408 LWAKFEIRHGNLPEARKILGRGLGMSGGKPALYKGYIALEAKLREFDRCRKLYDKYVEKF 467
Query: 163 MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLA 222
W E AE+ L ++A + EL +SQP + + L + + +N A
Sbjct: 468 AEFAAPWMEYAELEQMLGDEERARAIF-ELAVSQPEMEMPELVWKRFIEFEAEEENYDRA 526
Query: 223 KKYYASTIDLTGG 235
+ Y +D T G
Sbjct: 527 RAIYRQLLDRTHG 539
>sp|O60184|CYC8_SCHPO General transcriptional corepressor ssn6 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ssn6 PE=1 SV=1
Length = 1102
Score = 33.5 bits (75), Expect = 1.5, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 7/132 (5%)
Query: 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG----NFPTAIEWLNKYLE 160
G + E + + A++AY +L + P + ++ + Q N AI++L K LE
Sbjct: 519 GHVYEQRKEYKLAKEAYERVLAETPNHAKVLQQLGWLCHQQSSSFTNQDLAIQYLTKSLE 578
Query: 161 TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL 220
D +W + YV+ Q Y +A Y++ + P + + + Y + + L
Sbjct: 579 ADDTDAQSWYLIGRCYVAQQKYNKAYEAYQQAVYRDGRNPTFWCSIGVLYYQINQYQDAL 638
Query: 221 LAKKYYASTIDL 232
A Y+ I L
Sbjct: 639 DA---YSRAIRL 647
>sp|O34452|YRRB_BACSU TPR repeat-containing protein YrrB OS=Bacillus subtilis (strain
168) GN=yrrB PE=1 SV=1
Length = 206
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 62/142 (43%), Gaps = 12/142 (8%)
Query: 111 KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWR 170
+G + +A +A++ +E+N D + + + + A+ + +K LE + A+
Sbjct: 3 EGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYY 62
Query: 171 ELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV----DNILLAKKYY 226
+YV +MYK+A +E+ + + + D+ Y LG V + LA Y
Sbjct: 63 GAGNVYVVKEMYKEAKDMFEKALRA-------GMENGDLFYMLGTVLVKLEQPKLALPYL 115
Query: 227 ASTIDLT-GGKNTKALFGICLV 247
++L + FG+CL
Sbjct: 116 QRAVELNENDTEARFQFGMCLA 137
>sp|Q8IUR5|TMTC1_HUMAN Transmembrane and TPR repeat-containing protein 1 OS=Homo sapiens
GN=TMTC1 PE=1 SV=3
Length = 882
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/169 (21%), Positives = 68/169 (40%), Gaps = 4/169 (2%)
Query: 46 GLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEG 105
+++L D K GP+ Y ++ + + A++ + K P+S + G
Sbjct: 567 AITLLKDSIK---YGPEFADAYSSLASLLAEQERFKEAEEIYQTGIKNCPDSSDLHNNYG 623
Query: 106 ILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD 165
+ L GL +A Y ++ +P V + ++ G A EW + L+
Sbjct: 624 VFLVDTGLPEKAVAHYQQAIKLSPSHHVAMVNLGRLYRSLGENSMAEEWYKRALQV-AHK 682
Query: 166 HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
+ L +Y + Y++A Y+E QP+ LA A VL +G
Sbjct: 683 AEILSPLGALYYNTGRYEEALQIYQEAAALQPSQRELRLALAQVLAVMG 731
>sp|O77033|CYC8_DICDI General transcriptional corepressor trfA OS=Dictyostelium
discoideum GN=trfA PE=2 SV=1
Length = 1390
Score = 33.5 bits (75), Expect = 1.8, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 62/131 (47%), Gaps = 15/131 (11%)
Query: 105 GILLEAKGLWAEAEKAYSSLLE-DNPLDPV--LHKRRVAIAKAQGNFPTAIEWLNKYLET 161
GIL + G + AE+A++++L+ DN + ++ R + K QG + ++E+ ++
Sbjct: 282 GILYDRYGSYDHAEEAFTAVLKMDNKFEKSTEIYFRLGVLYKHQGKYDQSLEYFQHLVKN 341
Query: 162 F---MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV-- 216
+ D W ++ +Y + Y ++ YE+++ T ++ VL LG +
Sbjct: 342 PPLPLTTSDIWFQIGHVYELQKEYHKSKDAYEKVLKDNAT-------HSKVLQQLGWLYH 394
Query: 217 DNILLAKKYYA 227
N L + YA
Sbjct: 395 HNPLFTNQEYA 405
>sp|Q8NEE8|TTC16_HUMAN Tetratricopeptide repeat protein 16 OS=Homo sapiens GN=TTC16 PE=2
SV=2
Length = 873
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 64/149 (42%), Gaps = 20/149 (13%)
Query: 107 LLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH 166
+L +G A + + +E+NPLDP L R + + F A+E K L+ D
Sbjct: 260 ILAVQGKLQHALQRINRAIENNPLDPSLFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQ 319
Query: 167 D-----AWRELAEIY--VSLQMYKQAAFCYEELILS------QPTVPLYHLAYADVLYTL 213
+ A R+L Y ++ Y+Q A+ L+L+ Q LY + D + L
Sbjct: 320 EDMVRQAQRQLLLTYNDFAVHCYRQGAYQEGVLLLNKALRDEQQEKGLY-INRGDCFFQL 378
Query: 214 GGVDNILLAKKYYASTIDLTG---GKNTK 239
G N+ A+ Y + L+ G NT+
Sbjct: 379 G---NLAFAEADYQQALALSPQDEGANTR 404
>sp|Q3UV71|TMTC1_MOUSE Transmembrane and TPR repeat-containing protein 1 OS=Mus musculus
GN=Tmtc1 PE=2 SV=2
Length = 942
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 60/155 (38%), Gaps = 1/155 (0%)
Query: 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEK 119
GPD Y ++ + + A+D + K P+S + + L G +A
Sbjct: 638 GPDFADAYSSLASLLAEQERFKEAEDIYQAGIKNCPDSSDLHNNYAVFLVDSGFPEKAVA 697
Query: 120 AYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL 179
Y ++ +P V + ++ G A EW + L+ + L +Y +
Sbjct: 698 HYQQAIQLSPSHHVAVVNLGRLYRSLGENSKAEEWYRRALKV-ARTAEVLSPLGALYYNT 756
Query: 180 QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
+K+A Y E + QP+ LA A VL +G
Sbjct: 757 GRHKEALEVYREAVSLQPSQRELRLALAQVLAVMG 791
>sp|Q6INU8|TT30A_XENLA Tetratricopeptide repeat protein 30A OS=Xenopus laevis GN=ttc30a
PE=2 SV=1
Length = 651
Score = 32.7 bits (73), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 30/67 (44%)
Query: 145 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL 204
+ + AI+ L+ L+ L Y +Q + AA CYE+LI P V Y L
Sbjct: 21 EARYGEAIQVLSNELQKQYRSRAGLSLLGYCYYQIQDFVNAADCYEQLIQISPEVEEYKL 80
Query: 205 AYADVLY 211
YA LY
Sbjct: 81 YYAQSLY 87
>sp|B0D4E6|CHO2_LACBS Phosphatidylethanolamine N-methyltransferase OS=Laccaria bicolor
(strain S238N-H82 / ATCC MYA-4686) GN=CHO2 PE=3 SV=1
Length = 909
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 49/130 (37%), Gaps = 28/130 (21%)
Query: 3 TKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRH-----GLSILNDPKKRS 57
T E T + R N + GG AW L L+ K+ V+RH LS + +P R
Sbjct: 532 THLEYTGIYRYLNNPEAMGGAAWFGLALISGSKLVLSLAVIRHLANWWFLSSVENPHMRK 591
Query: 58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEA 117
G L +KV++ PE KRV R E KG + +
Sbjct: 592 LYG-----------------DSLRKDAGFVKVIKNHAPELKRVAR------EVKGTFDKV 628
Query: 118 EKAYSSLLED 127
+ + +ED
Sbjct: 629 FEETADAVED 638
>sp|A4IHR1|TT30A_XENTR Tetratricopeptide repeat protein 30A OS=Xenopus tropicalis
GN=ttc30a PE=2 SV=1
Length = 651
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 30/67 (44%)
Query: 145 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL 204
+ + AI+ L+ L+ L Y +Q + AA CYE+LI P V Y L
Sbjct: 21 EARYGEAIQILSNELQKQYRSRAGLSLLGYCYYQIQDFVNAADCYEQLIQITPEVEEYKL 80
Query: 205 AYADVLY 211
YA LY
Sbjct: 81 YYAQSLY 87
>sp|Q16JL4|TTC30_AEDAE Tetratricopeptide repeat protein 30 homolog OS=Aedes aegypti
GN=AAEL013294 PE=3 SV=1
Length = 659
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 172 LAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
L Y Q + +A+ CYE L+ P VP Y L YA L+ G
Sbjct: 49 LGHCYYQTQDFIEASNCYEYLVNLVPDVPEYKLYYAQSLFQAG 91
>sp|Q58741|Y1345_METJA TPR repeat-containing protein MJ1345 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1345 PE=4 SV=1
Length = 314
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 125 LEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWR-------ELAEIYV 177
L+ NP DP+L+ + I G + AI++ +K LE DAW +L +I
Sbjct: 242 LKLNPDDPLLYLYKGIILNKLGKYNEAIKYFDKVLEINPNIPDAWNGKAIALEKLGKINE 301
Query: 178 SLQMYKQAAFCYE 190
+++ Y +A YE
Sbjct: 302 AIECYNRALDIYE 314
>sp|Q29L58|TTC30_DROPS Tetratricopeptide repeat protein 30 homolog OS=Drosophila
pseudoobscura pseudoobscura GN=GA18687 PE=3 SV=1
Length = 654
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 20/43 (46%)
Query: 172 LAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
L Y Q Y++AA CYE+L P Y YA LY G
Sbjct: 49 LGHCYYHAQKYEEAATCYEQLCQLAPKEAKYRFYYAQSLYQAG 91
>sp|Q9VK41|TTC30_DROME Tetratricopeptide repeat protein 30 homolog OS=Drosophila
melanogaster GN=CG5142 PE=2 SV=3
Length = 655
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 20/43 (46%)
Query: 172 LAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214
L Y Q Y++AA CYE+L P Y YA LY G
Sbjct: 49 LGHCYYHAQKYEEAATCYEQLCQLAPKEAKYRFYYAQSLYQAG 91
>sp|Q9LU94|PP255_ARATH Putative pentatricopeptide repeat-containing protein At3g25970
OS=Arabidopsis thaliana GN=PCMP-E46 PE=3 SV=2
Length = 701
Score = 32.3 bits (72), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 124 LLEDNPL--DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM 181
L+E PL DP++ K + + +A G A + N LE DH + L+ +Y L+
Sbjct: 568 LIESMPLNPDPMVLKTFLGVCRACGEIEMATQVANHLLEIEPEDHFTYVSLSHMYSDLKK 627
Query: 182 YKQAA 186
+++ A
Sbjct: 628 WEEKA 632
>sp|Q6PGP7|TTC37_HUMAN Tetratricopeptide repeat protein 37 OS=Homo sapiens GN=TTC37 PE=1
SV=1
Length = 1564
Score = 32.0 bits (71), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 112 GLWAEAEKAYSSLLEDNPLDP--VLHKRRVA---IAKAQGNFPTAI-EWLNKYLETFMAD 165
G +EAE + L+ NP P +L R+V + ++Q P A+ E L K + +
Sbjct: 1340 GRISEAETLCTKNLKSNPDQPAVILLLRQVQCKPLLESQKPLPDAVLEELQKTVMSNSTS 1399
Query: 166 HDAWRELAEIYVSLQMYKQAAFCYEE 191
AW+ LA +Y S M + A CY +
Sbjct: 1400 VPAWQWLAHVYQSQGMMRAAEMCYRK 1425
>sp|O83062|GRAD_TREPA Putative GreA-associated domains protein OS=Treponema pallidum
(strain Nichols) GN=TP_0018 PE=4 SV=1
Length = 657
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 27/143 (18%)
Query: 49 ILNDPKKRSALGPDV-----WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRL 103
+L KR L + W L +V I + D C + KV Q+ P VG
Sbjct: 344 VLKSVLKRQDLAAKIRQDPEWAL--KVIITSFDNNC-----NLKKVKQELVPSLLSVGEW 396
Query: 104 EGILLEAKGLWAEAEKAYSSLLEDNPLD---------PVLHKRRVAIA-KAQGNFPTAIE 153
+A+ + E S+ NP + PV + ++A+ KAQ NF I+
Sbjct: 397 TSWSTKARKILKE-----STGFAANPSNIDFYTVRSCPVSLEEKLAVEFKAQKNFFARID 451
Query: 154 WLNKYLETFMADHDAWRELAEIY 176
LN +++ D DA+RE+ + +
Sbjct: 452 ILNTFMDKADTDSDAFREMFDYF 474
>sp|Q95LZ5|TTC16_MACFA Tetratricopeptide repeat protein 16 OS=Macaca fascicularis GN=TTC16
PE=2 SV=1
Length = 872
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 20/149 (13%)
Query: 107 LLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH 166
+L +G A + + +E+NPLDP R + + F A+E K L+ D
Sbjct: 260 ILAVQGRLQHALQRINCAIENNPLDPSFFLFRGTMYRRLQEFDGAVEDFLKVLDMVTEDQ 319
Query: 167 D-----AWRELAEIY--VSLQMYKQAAFCYEELILS------QPTVPLYHLAYADVLYTL 213
+ A R+L Y ++ Y+Q A+ L+L+ Q LY + D + L
Sbjct: 320 EDIMRQAQRQLLLTYNDFAVHCYRQGAYQEGVLLLNKALRDEQQEKGLY-INRGDCFFQL 378
Query: 214 GGVDNILLAKKYYASTIDLTG---GKNTK 239
G N+ A+ Y + L+ G NT+
Sbjct: 379 G---NLAFAEADYQQALALSPQDEGANTR 404
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,295,329
Number of Sequences: 539616
Number of extensions: 3904406
Number of successful extensions: 10036
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 9910
Number of HSP's gapped (non-prelim): 147
length of query: 263
length of database: 191,569,459
effective HSP length: 115
effective length of query: 148
effective length of database: 129,513,619
effective search space: 19168015612
effective search space used: 19168015612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)