Query 024712
Match_columns 263
No_of_seqs 398 out of 1941
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 06:47:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024712.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024712hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3060 Uncharacterized conser 100.0 1.5E-31 3.2E-36 195.9 26.4 237 1-250 1-237 (289)
2 KOG4626 O-linked N-acetylgluco 99.9 4.9E-25 1.1E-29 180.0 21.9 192 55-250 311-502 (966)
3 KOG4626 O-linked N-acetylgluco 99.9 3.6E-25 7.8E-30 180.8 16.7 175 57-234 245-419 (966)
4 TIGR00990 3a0801s09 mitochondr 99.9 2.7E-22 5.8E-27 175.0 27.5 191 38-235 309-499 (615)
5 KOG1126 DNA-binding cell divis 99.9 1.3E-23 2.8E-28 172.9 15.8 188 59-250 416-603 (638)
6 COG3063 PilF Tfp pilus assembl 99.9 4.5E-22 9.7E-27 144.7 21.9 189 63-254 34-224 (250)
7 TIGR00990 3a0801s09 mitochondr 99.9 3.1E-21 6.6E-26 168.4 26.9 202 38-250 346-554 (615)
8 PRK12370 invasion protein regu 99.9 1.1E-20 2.4E-25 162.4 25.7 185 57-245 288-482 (553)
9 TIGR02521 type_IV_pilW type IV 99.9 3.9E-20 8.5E-25 142.0 25.0 183 62-248 29-213 (234)
10 KOG1125 TPR repeat-containing 99.9 3.9E-21 8.4E-26 156.1 19.2 183 70-256 291-518 (579)
11 PRK11189 lipoprotein NlpI; Pro 99.9 5.1E-20 1.1E-24 146.3 25.3 200 40-247 43-280 (296)
12 KOG1126 DNA-binding cell divis 99.9 1.3E-21 2.7E-26 161.2 15.6 184 60-247 349-566 (638)
13 PRK09782 bacteriophage N4 rece 99.9 3E-19 6.5E-24 160.1 31.0 167 65-235 543-709 (987)
14 PRK15174 Vi polysaccharide exp 99.9 1.8E-19 3.9E-24 157.4 28.2 173 60-235 106-316 (656)
15 PRK15174 Vi polysaccharide exp 99.9 2.2E-19 4.8E-24 156.8 27.5 204 36-250 55-296 (656)
16 KOG1155 Anaphase-promoting com 99.9 3.1E-20 6.8E-25 147.3 19.7 160 69-231 335-494 (559)
17 PRK11447 cellulose synthase su 99.9 2.7E-19 5.9E-24 165.7 27.0 199 38-247 284-538 (1157)
18 PRK11788 tetratricopeptide rep 99.9 6.4E-19 1.4E-23 146.1 26.3 168 65-235 108-281 (389)
19 KOG1155 Anaphase-promoting com 99.9 1.4E-19 3.1E-24 143.6 20.8 185 62-250 260-478 (559)
20 TIGR02521 type_IV_pilW type IV 99.9 1.1E-18 2.4E-23 134.0 24.5 189 35-233 43-233 (234)
21 TIGR02917 PEP_TPR_lipo putativ 99.9 1.1E-18 2.4E-23 158.5 28.3 185 60-250 699-883 (899)
22 PRK09782 bacteriophage N4 rece 99.8 1.5E-18 3.2E-23 155.7 26.6 172 60-235 572-743 (987)
23 TIGR02917 PEP_TPR_lipo putativ 99.8 4.9E-18 1.1E-22 154.2 30.3 185 60-248 495-679 (899)
24 PRK12370 invasion protein regu 99.8 3.2E-19 6.9E-24 153.4 20.6 168 78-248 275-451 (553)
25 TIGR03302 OM_YfiO outer membra 99.8 1.7E-18 3.6E-23 133.7 21.4 174 58-234 27-234 (235)
26 PRK11788 tetratricopeptide rep 99.8 1.6E-17 3.6E-22 137.7 28.6 188 37-234 49-245 (389)
27 PRK11447 cellulose synthase su 99.8 5.8E-18 1.3E-22 157.0 26.6 186 58-247 379-680 (1157)
28 PLN02789 farnesyltranstransfer 99.8 1.2E-17 2.6E-22 132.7 24.6 211 23-245 38-262 (320)
29 PF13429 TPR_15: Tetratricopep 99.8 2.3E-19 4.9E-24 142.1 14.0 165 65-232 111-277 (280)
30 KOG1173 Anaphase-promoting com 99.8 5E-18 1.1E-22 137.8 21.3 204 37-250 292-537 (611)
31 KOG0547 Translocase of outer m 99.8 1.3E-18 2.9E-23 138.9 17.7 176 57-235 353-535 (606)
32 KOG0547 Translocase of outer m 99.8 1.9E-18 4.2E-23 138.1 18.4 211 22-235 343-569 (606)
33 KOG1125 TPR repeat-containing 99.8 1.6E-18 3.5E-23 141.1 18.2 173 60-235 315-530 (579)
34 PLN02789 farnesyltranstransfer 99.8 1.6E-17 3.4E-22 132.1 22.3 188 60-248 33-227 (320)
35 PRK15359 type III secretion sy 99.8 1.8E-18 4E-23 122.5 15.1 127 84-213 13-139 (144)
36 PF13429 TPR_15: Tetratricopep 99.8 4.5E-18 9.7E-23 134.7 14.0 184 60-249 74-259 (280)
37 PRK15359 type III secretion sy 99.8 1.7E-17 3.6E-22 117.6 14.6 118 118-242 13-130 (144)
38 PRK10370 formate-dependent nit 99.8 7.4E-17 1.6E-21 120.2 18.5 151 71-235 23-176 (198)
39 PRK11189 lipoprotein NlpI; Pro 99.8 1.5E-16 3.3E-21 126.5 21.1 154 77-234 39-196 (296)
40 PRK15179 Vi polysaccharide bio 99.8 5.9E-16 1.3E-20 134.3 24.6 159 79-241 67-225 (694)
41 COG3063 PilF Tfp pilus assembl 99.8 7.9E-16 1.7E-20 112.4 21.1 188 38-235 50-239 (250)
42 PRK10370 formate-dependent nit 99.8 1.6E-16 3.5E-21 118.4 17.6 125 77-201 52-179 (198)
43 KOG1129 TPR repeat-containing 99.8 5.7E-17 1.2E-21 124.0 14.8 182 62-247 254-438 (478)
44 PRK10049 pgaA outer membrane p 99.7 1.1E-15 2.3E-20 136.4 24.5 163 70-235 278-459 (765)
45 KOG2003 TPR repeat-containing 99.7 1.9E-15 4E-20 120.6 21.3 186 61-250 521-706 (840)
46 COG2956 Predicted N-acetylgluc 99.7 3.4E-15 7.5E-20 114.0 21.8 171 62-235 105-281 (389)
47 COG2956 Predicted N-acetylgluc 99.7 3.3E-15 7.1E-20 114.2 21.7 213 27-250 39-261 (389)
48 PRK10049 pgaA outer membrane p 99.7 1.6E-15 3.4E-20 135.3 22.9 166 64-234 15-180 (765)
49 KOG1129 TPR repeat-containing 99.7 4.5E-16 9.8E-21 119.2 16.1 202 23-235 257-461 (478)
50 PRK14574 hmsH outer membrane p 99.7 3E-15 6.5E-20 132.2 23.0 190 56-250 26-215 (822)
51 COG5010 TadD Flp pilus assembl 99.7 2.2E-15 4.8E-20 112.2 18.6 167 59-229 62-228 (257)
52 KOG2002 TPR-containing nuclear 99.7 1.7E-15 3.7E-20 130.1 20.1 187 60-250 526-762 (1018)
53 PRK15179 Vi polysaccharide bio 99.7 1E-14 2.2E-19 126.8 24.0 143 60-202 82-224 (694)
54 TIGR02552 LcrH_SycD type III s 99.7 1.1E-15 2.5E-20 107.6 14.9 113 120-235 5-117 (135)
55 TIGR02552 LcrH_SycD type III s 99.7 1.5E-15 3.1E-20 107.0 15.3 119 85-203 4-122 (135)
56 KOG2002 TPR-containing nuclear 99.7 6.8E-15 1.5E-19 126.5 21.5 188 60-250 160-354 (1018)
57 PRK10747 putative protoheme IX 99.7 6.5E-14 1.4E-18 116.0 26.9 204 34-250 129-375 (398)
58 TIGR03302 OM_YfiO outer membra 99.7 6.2E-15 1.4E-19 113.8 18.8 153 95-250 30-215 (235)
59 KOG0624 dsRNA-activated protei 99.7 1.1E-14 2.4E-19 112.3 18.6 194 39-235 38-255 (504)
60 COG5010 TadD Flp pilus assembl 99.7 1.5E-14 3.3E-19 107.8 18.7 168 78-250 47-214 (257)
61 KOG2003 TPR repeat-containing 99.7 8.4E-15 1.8E-19 116.9 18.0 182 63-248 489-670 (840)
62 KOG1173 Anaphase-promoting com 99.7 3E-14 6.5E-19 116.2 20.6 178 68-250 283-501 (611)
63 cd05804 StaR_like StaR_like; a 99.7 7.3E-14 1.6E-18 114.5 23.3 169 62-234 41-217 (355)
64 KOG0624 dsRNA-activated protei 99.7 6E-14 1.3E-18 108.3 20.8 188 59-250 33-235 (504)
65 KOG1174 Anaphase-promoting com 99.7 3.4E-14 7.4E-19 112.0 19.7 179 67-250 303-517 (564)
66 KOG0553 TPR repeat-containing 99.7 3.7E-15 8E-20 113.1 13.6 116 100-215 83-198 (304)
67 PRK10747 putative protoheme IX 99.7 2E-13 4.4E-18 113.1 25.2 168 59-233 182-391 (398)
68 KOG1840 Kinesin light chain [C 99.7 9.4E-15 2E-19 121.5 17.0 174 57-233 192-397 (508)
69 PRK15363 pathogenicity island 99.6 6.7E-15 1.4E-19 102.7 12.9 105 126-233 28-133 (157)
70 cd05804 StaR_like StaR_like; a 99.6 1.1E-13 2.5E-18 113.3 21.8 172 60-235 2-180 (355)
71 KOG2076 RNA polymerase III tra 99.6 3.4E-13 7.3E-18 115.4 24.6 201 38-249 154-494 (895)
72 KOG0495 HAT repeat protein [RN 99.6 3.1E-13 6.8E-18 112.2 22.9 198 37-246 564-761 (913)
73 PRK14720 transcript cleavage f 99.6 8.1E-14 1.8E-18 122.4 20.5 187 57-250 24-269 (906)
74 PRK14574 hmsH outer membrane p 99.6 3.8E-13 8.2E-18 119.1 24.0 195 25-230 36-230 (822)
75 TIGR00540 hemY_coli hemY prote 99.6 1.7E-12 3.7E-17 108.1 26.2 166 67-235 156-369 (409)
76 COG4783 Putative Zn-dependent 99.6 9.6E-13 2.1E-17 106.1 23.3 136 95-233 303-438 (484)
77 KOG0548 Molecular co-chaperone 99.6 1.4E-13 3.1E-18 111.7 17.8 168 70-249 304-471 (539)
78 KOG2076 RNA polymerase III tra 99.6 6.5E-13 1.4E-17 113.7 22.6 166 64-232 139-309 (895)
79 KOG0495 HAT repeat protein [RN 99.6 3.1E-13 6.7E-18 112.3 20.0 179 64-245 651-860 (913)
80 PRK15363 pathogenicity island 99.6 9.3E-14 2E-18 97.0 14.2 108 90-197 26-134 (157)
81 KOG0553 TPR repeat-containing 99.6 3.8E-14 8.3E-19 107.6 13.2 120 64-183 81-200 (304)
82 KOG0550 Molecular chaperone (D 99.6 1.2E-13 2.5E-18 109.0 16.2 172 61-235 166-353 (486)
83 KOG1156 N-terminal acetyltrans 99.6 4.9E-13 1.1E-17 110.8 20.1 203 36-249 20-264 (700)
84 COG4783 Putative Zn-dependent 99.6 3.8E-13 8.2E-18 108.4 18.9 154 61-234 303-456 (484)
85 PLN03088 SGT1, suppressor of 99.6 1.7E-13 3.8E-18 111.4 15.9 112 102-213 6-117 (356)
86 KOG3060 Uncharacterized conser 99.6 8.8E-13 1.9E-17 97.8 17.2 152 61-212 83-237 (289)
87 PRK10866 outer membrane biogen 99.6 6.5E-12 1.4E-16 96.6 22.7 164 62-228 30-237 (243)
88 TIGR00540 hemY_coli hemY prote 99.5 8E-12 1.7E-16 104.1 24.7 173 60-235 114-331 (409)
89 PF13525 YfiO: Outer membrane 99.5 3.1E-12 6.6E-17 96.2 20.1 159 62-223 3-198 (203)
90 KOG1127 TPR repeat-containing 99.5 3.8E-13 8.3E-18 116.2 16.7 192 57-252 485-678 (1238)
91 KOG1174 Anaphase-promoting com 99.5 4.8E-12 1E-16 100.1 20.5 185 63-251 195-381 (564)
92 KOG4162 Predicted calmodulin-b 99.5 5.4E-13 1.2E-17 112.5 16.2 136 66-201 652-789 (799)
93 KOG1840 Kinesin light chain [C 99.5 2.5E-12 5.4E-17 107.2 20.0 174 55-231 274-478 (508)
94 PLN03088 SGT1, suppressor of 99.5 7.6E-13 1.6E-17 107.7 16.0 113 67-179 5-117 (356)
95 KOG4162 Predicted calmodulin-b 99.5 8.4E-12 1.8E-16 105.5 22.4 192 55-250 469-766 (799)
96 KOG1156 N-terminal acetyltrans 99.5 3E-12 6.6E-17 106.2 17.5 165 66-233 9-173 (700)
97 KOG0548 Molecular co-chaperone 99.5 3E-12 6.4E-17 104.2 15.9 149 77-228 337-485 (539)
98 KOG1128 Uncharacterized conser 99.5 1.8E-12 4E-17 108.8 14.2 170 60-242 394-591 (777)
99 COG4235 Cytochrome c biogenesi 99.5 7.1E-12 1.5E-16 96.0 15.7 119 114-235 138-259 (287)
100 TIGR02795 tol_pal_ybgF tol-pal 99.5 5.5E-12 1.2E-16 86.6 13.8 99 101-199 5-109 (119)
101 PF12569 NARP1: NMDA receptor- 99.5 6E-11 1.3E-15 100.0 22.5 66 167-235 195-260 (517)
102 PF09976 TPR_21: Tetratricopep 99.4 1.4E-11 3.1E-16 87.6 15.9 116 76-192 23-144 (145)
103 PF04733 Coatomer_E: Coatomer 99.4 1.1E-11 2.4E-16 97.7 16.3 199 23-235 67-268 (290)
104 KOG0550 Molecular chaperone (D 99.4 2.6E-12 5.6E-17 101.5 12.1 190 57-250 110-333 (486)
105 TIGR02795 tol_pal_ybgF tol-pal 99.4 1.4E-11 3E-16 84.5 14.2 106 64-169 2-113 (119)
106 cd00189 TPR Tetratricopeptide 99.4 7.1E-12 1.5E-16 81.9 11.9 97 135-234 3-99 (100)
107 COG4235 Cytochrome c biogenesi 99.4 2.1E-11 4.5E-16 93.4 15.4 123 79-201 137-262 (287)
108 PF13414 TPR_11: TPR repeat; P 99.4 1.7E-12 3.7E-17 80.0 7.7 66 166-234 3-69 (69)
109 cd00189 TPR Tetratricopeptide 99.4 9.5E-12 2.1E-16 81.3 11.8 98 100-197 2-99 (100)
110 PRK02603 photosystem I assembl 99.4 3.2E-11 6.9E-16 88.4 15.6 88 97-184 34-124 (172)
111 PF09976 TPR_21: Tetratricopep 99.4 6.6E-11 1.4E-15 84.2 16.6 118 109-230 22-145 (145)
112 PF13414 TPR_11: TPR repeat; P 99.4 3.8E-12 8.2E-17 78.4 8.4 67 131-197 2-69 (69)
113 KOG1128 Uncharacterized conser 99.4 2.6E-11 5.6E-16 102.1 15.8 164 62-234 455-618 (777)
114 CHL00033 ycf3 photosystem I as 99.4 2.8E-11 6E-16 88.4 14.2 102 134-235 37-152 (168)
115 PRK14720 transcript cleavage f 99.4 6.6E-11 1.4E-15 104.4 18.6 169 35-213 43-270 (906)
116 PRK11906 transcriptional regul 99.4 1.6E-10 3.5E-15 93.8 19.0 162 68-233 259-437 (458)
117 PRK10153 DNA-binding transcrip 99.4 1.9E-10 4.2E-15 97.5 20.4 140 92-235 331-485 (517)
118 PRK10153 DNA-binding transcrip 99.4 1E-10 2.2E-15 99.2 18.5 141 60-201 333-488 (517)
119 CHL00033 ycf3 photosystem I as 99.4 5.3E-11 1.1E-15 86.9 14.6 122 79-200 14-154 (168)
120 KOG1127 TPR repeat-containing 99.4 3.2E-11 7E-16 104.6 15.3 170 78-250 472-644 (1238)
121 PF13525 YfiO: Outer membrane 99.4 1.7E-10 3.6E-15 86.8 17.4 152 96-250 3-190 (203)
122 PLN03218 maturation of RBCL 1; 99.4 2.2E-09 4.7E-14 98.1 27.5 159 67-230 582-746 (1060)
123 PLN03218 maturation of RBCL 1; 99.4 2.1E-09 4.6E-14 98.2 27.3 161 66-231 616-782 (1060)
124 PF12895 Apc3: Anaphase-promot 99.3 5.6E-12 1.2E-16 80.9 7.8 81 145-229 2-84 (84)
125 PRK15331 chaperone protein Sic 99.3 3.7E-11 8E-16 84.5 12.1 98 131-231 36-133 (165)
126 KOG0543 FKBP-type peptidyl-pro 99.3 8.9E-11 1.9E-15 93.2 14.9 133 100-234 210-357 (397)
127 PF12895 Apc3: Anaphase-promot 99.3 8.2E-12 1.8E-16 80.1 7.3 80 111-191 2-83 (84)
128 PRK02603 photosystem I assembl 99.3 2.1E-10 4.5E-15 84.1 15.4 120 60-199 31-153 (172)
129 PF13432 TPR_16: Tetratricopep 99.3 1.2E-11 2.7E-16 75.1 7.1 60 139-198 4-63 (65)
130 PRK11906 transcriptional regul 99.3 1.2E-09 2.6E-14 88.9 19.7 131 102-235 259-404 (458)
131 PRK10803 tol-pal system protei 99.3 3.6E-10 7.9E-15 87.6 16.2 103 99-201 143-252 (263)
132 PF09295 ChAPs: ChAPs (Chs5p-A 99.3 3E-10 6.5E-15 92.5 16.2 122 69-193 174-295 (395)
133 KOG2376 Signal recognition par 99.3 1.1E-09 2.4E-14 90.4 19.4 188 34-235 23-256 (652)
134 PRK10866 outer membrane biogen 99.3 1.9E-09 4.1E-14 83.1 19.6 152 96-250 30-224 (243)
135 PRK15331 chaperone protein Sic 99.3 1.5E-10 3.2E-15 81.5 12.1 98 97-194 36-133 (165)
136 COG4105 ComL DNA uptake lipopr 99.3 6.9E-09 1.5E-13 78.1 21.5 170 62-235 32-235 (254)
137 PF13432 TPR_16: Tetratricopep 99.3 4.3E-11 9.2E-16 72.8 8.2 64 103-166 2-65 (65)
138 COG3071 HemY Uncharacterized e 99.2 4.6E-08 1E-12 77.6 25.8 169 61-235 150-360 (400)
139 PF12569 NARP1: NMDA receptor- 99.2 7.7E-09 1.7E-13 87.5 23.0 179 17-196 138-335 (517)
140 PLN03081 pentatricopeptide (PP 99.2 1.1E-09 2.4E-14 97.5 18.8 176 65-249 260-437 (697)
141 COG3071 HemY Uncharacterized e 99.2 7.6E-08 1.6E-12 76.3 26.5 184 60-250 114-340 (400)
142 PF14938 SNAP: Soluble NSF att 99.2 9.7E-10 2.1E-14 87.0 16.2 185 63-251 34-248 (282)
143 PF09295 ChAPs: ChAPs (Chs5p-A 99.2 8E-10 1.7E-14 90.0 15.9 120 104-229 175-294 (395)
144 PRK10803 tol-pal system protei 99.2 1.3E-09 2.8E-14 84.6 16.3 104 65-168 143-253 (263)
145 PF12688 TPR_5: Tetratrico pep 99.2 9.8E-10 2.1E-14 74.5 13.6 96 99-194 2-103 (120)
146 COG4785 NlpI Lipoprotein NlpI, 99.2 3.4E-09 7.3E-14 77.4 16.5 182 62-247 63-281 (297)
147 PF04733 Coatomer_E: Coatomer 99.2 2.8E-10 6E-15 89.8 11.7 175 67-250 69-247 (290)
148 KOG4340 Uncharacterized conser 99.2 1.1E-09 2.3E-14 83.7 14.0 185 36-232 23-207 (459)
149 PLN03081 pentatricopeptide (PP 99.2 4.1E-09 8.9E-14 93.9 19.1 163 65-232 392-557 (697)
150 KOG0543 FKBP-type peptidyl-pro 99.2 3.2E-09 7E-14 84.5 15.9 131 67-197 211-357 (397)
151 PF14559 TPR_19: Tetratricopep 99.2 1.8E-10 3.8E-15 70.7 7.1 64 144-207 3-66 (68)
152 KOG1070 rRNA processing protei 99.2 3.6E-08 7.8E-13 88.9 23.9 228 17-251 1451-1683(1710)
153 KOG3785 Uncharacterized conser 99.2 2E-09 4.4E-14 84.1 14.2 160 65-235 58-217 (557)
154 PF13512 TPR_18: Tetratricopep 99.1 4.6E-09 1E-13 72.4 13.7 85 63-147 9-99 (142)
155 PF13371 TPR_9: Tetratricopept 99.1 9.1E-10 2E-14 68.5 8.4 66 140-205 3-68 (73)
156 PF14559 TPR_19: Tetratricopep 99.1 5.1E-10 1.1E-14 68.6 7.1 64 110-173 3-66 (68)
157 KOG2376 Signal recognition par 99.1 2.3E-08 5E-13 82.9 17.3 153 71-230 19-202 (652)
158 COG1729 Uncharacterized protei 99.1 1.5E-08 3.2E-13 77.0 14.7 99 102-200 145-249 (262)
159 COG0457 NrfG FOG: TPR repeat [ 99.1 1.4E-07 3E-12 71.8 20.7 172 60-234 91-267 (291)
160 PF12688 TPR_5: Tetratrico pep 99.0 1.1E-08 2.5E-13 69.3 12.6 96 133-231 2-103 (120)
161 PLN03077 Protein ECB2; Provisi 99.0 8.3E-08 1.8E-12 87.7 22.1 155 65-230 425-616 (857)
162 COG1729 Uncharacterized protei 99.0 1.8E-08 3.8E-13 76.6 14.5 105 67-171 144-254 (262)
163 PLN03077 Protein ECB2; Provisi 99.0 4.3E-08 9.2E-13 89.6 19.5 162 63-230 553-718 (857)
164 PF13371 TPR_9: Tetratricopept 99.0 2.8E-09 6E-14 66.3 8.4 64 106-169 3-66 (73)
165 KOG1915 Cell cycle control pro 99.0 4.4E-07 9.6E-12 73.8 22.5 200 37-242 336-546 (677)
166 KOG1915 Cell cycle control pro 99.0 2.6E-07 5.6E-12 75.2 21.1 168 63-235 72-239 (677)
167 KOG1130 Predicted G-alpha GTPa 99.0 2.7E-10 5.8E-15 90.5 4.1 167 63-232 54-264 (639)
168 PF13512 TPR_18: Tetratricopep 99.0 5.2E-08 1.1E-12 67.2 13.8 104 97-200 9-133 (142)
169 KOG4234 TPR repeat-containing 99.0 1.7E-08 3.6E-13 72.9 11.6 111 102-212 99-214 (271)
170 COG0457 NrfG FOG: TPR repeat [ 99.0 4.4E-07 9.5E-12 69.0 20.7 170 63-235 58-234 (291)
171 KOG4648 Uncharacterized conser 99.0 1.5E-09 3.3E-14 84.4 6.6 107 67-173 100-206 (536)
172 COG4700 Uncharacterized protei 99.0 1.6E-07 3.4E-12 67.2 16.0 149 76-229 68-219 (251)
173 KOG2796 Uncharacterized conser 98.9 1.1E-06 2.3E-11 66.5 20.4 134 99-235 178-318 (366)
174 KOG4340 Uncharacterized conser 98.9 4.3E-08 9.3E-13 75.2 12.8 171 74-250 20-190 (459)
175 PF14938 SNAP: Soluble NSF att 98.9 6.2E-08 1.3E-12 76.8 14.5 171 62-234 73-268 (282)
176 KOG3785 Uncharacterized conser 98.9 1.2E-07 2.7E-12 74.3 15.3 192 13-213 29-232 (557)
177 KOG4234 TPR repeat-containing 98.9 3.3E-08 7.1E-13 71.4 11.2 99 134-235 97-200 (271)
178 KOG4648 Uncharacterized conser 98.9 1.2E-08 2.6E-13 79.5 9.3 109 101-209 100-208 (536)
179 KOG3081 Vesicle coat complex C 98.9 1.9E-06 4.2E-11 65.1 20.3 161 65-235 109-274 (299)
180 COG4700 Uncharacterized protei 98.9 1.1E-06 2.5E-11 62.9 17.8 117 70-187 95-214 (251)
181 COG4785 NlpI Lipoprotein NlpI, 98.9 1.5E-07 3.2E-12 69.0 13.5 134 97-234 64-198 (297)
182 KOG2047 mRNA splicing factor [ 98.9 2.7E-06 5.8E-11 71.8 22.5 178 62-241 385-588 (835)
183 PLN03098 LPA1 LOW PSII ACCUMUL 98.9 1.7E-08 3.7E-13 82.2 9.3 70 127-196 70-142 (453)
184 PLN03098 LPA1 LOW PSII ACCUMUL 98.9 2E-08 4.3E-13 81.8 9.6 70 93-162 70-142 (453)
185 KOG1070 rRNA processing protei 98.9 6.1E-07 1.3E-11 81.3 19.3 179 60-242 1454-1640(1710)
186 KOG2610 Uncharacterized conser 98.8 2.7E-07 5.9E-12 71.9 14.9 157 71-230 110-274 (491)
187 PF06552 TOM20_plant: Plant sp 98.8 4.6E-08 9.9E-13 69.7 9.8 66 114-179 7-82 (186)
188 KOG1130 Predicted G-alpha GTPa 98.8 1.2E-08 2.5E-13 81.5 6.5 179 69-250 100-327 (639)
189 KOG2796 Uncharacterized conser 98.8 1.5E-06 3.2E-11 65.7 17.1 135 66-200 179-320 (366)
190 PF06552 TOM20_plant: Plant sp 98.8 1.5E-07 3.3E-12 67.1 11.2 67 80-146 7-83 (186)
191 PF05843 Suf: Suppressor of fo 98.8 4.8E-07 1E-11 71.5 15.1 131 68-198 5-139 (280)
192 COG4105 ComL DNA uptake lipopr 98.8 4E-06 8.8E-11 63.5 19.0 136 97-235 33-199 (254)
193 PF13424 TPR_12: Tetratricopep 98.8 1.6E-08 3.4E-13 63.7 5.4 25 169-193 49-73 (78)
194 KOG4555 TPR repeat-containing 98.8 1.1E-06 2.4E-11 59.2 13.8 96 67-162 46-145 (175)
195 KOG4555 TPR repeat-containing 98.7 7.4E-07 1.6E-11 60.0 12.4 99 101-199 46-148 (175)
196 KOG2053 Mitochondrial inherita 98.7 1.2E-06 2.7E-11 76.2 16.2 137 74-211 19-155 (932)
197 PF05843 Suf: Suppressor of fo 98.7 9.8E-07 2.1E-11 69.7 14.7 133 100-235 3-139 (280)
198 PF13424 TPR_12: Tetratricopep 98.7 1.6E-08 3.6E-13 63.7 3.8 67 163-232 2-75 (78)
199 PF13281 DUF4071: Domain of un 98.7 1.6E-05 3.5E-10 64.3 20.9 191 4-200 120-339 (374)
200 PRK04841 transcriptional regul 98.7 4.7E-06 1E-10 76.9 19.8 167 64-233 452-642 (903)
201 KOG1941 Acetylcholine receptor 98.6 1.5E-06 3.3E-11 68.6 13.3 185 63-250 82-298 (518)
202 KOG1941 Acetylcholine receptor 98.6 2E-06 4.3E-11 67.9 13.6 220 35-261 18-271 (518)
203 PRK04841 transcriptional regul 98.6 9.4E-06 2E-10 74.9 20.3 165 67-234 412-604 (903)
204 KOG4642 Chaperone-dependent E3 98.6 1.4E-07 3.1E-12 70.0 6.7 91 70-160 16-106 (284)
205 KOG1586 Protein required for f 98.6 1.6E-05 3.5E-10 59.1 17.2 170 62-235 32-227 (288)
206 PF13281 DUF4071: Domain of un 98.6 2.2E-05 4.7E-10 63.5 18.9 169 63-235 140-337 (374)
207 PF13428 TPR_14: Tetratricopep 98.6 1.8E-07 4E-12 51.6 4.9 40 168-207 3-42 (44)
208 KOG3081 Vesicle coat complex C 98.5 6E-05 1.3E-09 57.3 18.7 143 97-250 107-253 (299)
209 PF13428 TPR_14: Tetratricopep 98.5 3.3E-07 7.1E-12 50.6 5.3 42 133-174 2-43 (44)
210 COG3118 Thioredoxin domain-con 98.5 3E-05 6.5E-10 59.9 17.0 156 69-228 139-297 (304)
211 KOG4642 Chaperone-dependent E3 98.5 4E-07 8.6E-12 67.7 6.3 94 102-195 14-107 (284)
212 PF04184 ST7: ST7 protein; In 98.5 3.2E-05 7E-10 63.8 17.7 174 66-242 170-384 (539)
213 KOG2047 mRNA splicing factor [ 98.5 8.2E-05 1.8E-09 63.2 19.9 174 60-238 345-546 (835)
214 KOG2471 TPR repeat-containing 98.4 3.1E-06 6.7E-11 69.3 10.7 147 69-215 211-384 (696)
215 KOG0376 Serine-threonine phosp 98.4 6.4E-07 1.4E-11 73.1 6.5 111 66-176 6-116 (476)
216 COG3898 Uncharacterized membra 98.4 0.00019 4.1E-09 57.6 19.4 174 63-242 119-302 (531)
217 PF13431 TPR_17: Tetratricopep 98.4 3.9E-07 8.5E-12 47.0 3.1 31 155-185 2-32 (34)
218 KOG0376 Serine-threonine phosp 98.4 7.5E-07 1.6E-11 72.7 6.1 112 103-214 9-120 (476)
219 KOG2053 Mitochondrial inherita 98.4 2.4E-05 5.3E-10 68.4 14.8 123 109-235 20-142 (932)
220 KOG1585 Protein required for f 98.3 0.00017 3.7E-09 54.2 16.6 167 63-232 30-219 (308)
221 KOG2610 Uncharacterized conser 98.3 2.4E-05 5.2E-10 61.4 11.6 125 104-231 109-237 (491)
222 PF00515 TPR_1: Tetratricopept 98.3 2.1E-06 4.5E-11 44.4 4.2 32 167-198 2-33 (34)
223 PF13431 TPR_17: Tetratricopep 98.3 1.2E-06 2.6E-11 45.2 3.1 33 188-223 1-33 (34)
224 PF07719 TPR_2: Tetratricopept 98.3 3.4E-06 7.3E-11 43.6 4.8 32 167-198 2-33 (34)
225 KOG0545 Aryl-hydrocarbon recep 98.2 2.2E-05 4.7E-10 58.9 10.5 102 98-199 178-297 (329)
226 PF10300 DUF3808: Protein of u 98.2 3.4E-05 7.5E-10 65.4 13.3 119 77-195 246-376 (468)
227 KOG0545 Aryl-hydrocarbon recep 98.2 2.4E-05 5.2E-10 58.7 10.6 100 133-235 179-296 (329)
228 PF10300 DUF3808: Protein of u 98.2 0.00025 5.3E-09 60.3 17.6 153 77-232 201-376 (468)
229 PF03704 BTAD: Bacterial trans 98.2 0.00014 3E-09 51.7 13.9 110 105-230 13-123 (146)
230 KOG2471 TPR repeat-containing 98.2 1.7E-05 3.8E-10 65.1 9.5 146 103-252 211-383 (696)
231 PF04184 ST7: ST7 protein; In 98.1 0.00026 5.7E-09 58.6 15.6 165 28-204 176-384 (539)
232 KOG0530 Protein farnesyltransf 98.1 0.0005 1.1E-08 52.3 15.4 170 74-244 53-227 (318)
233 PF08424 NRDE-2: NRDE-2, neces 98.1 0.00062 1.4E-08 55.0 17.4 146 85-233 6-184 (321)
234 PF03704 BTAD: Bacterial trans 98.1 0.00036 7.9E-09 49.5 13.7 113 69-194 11-124 (146)
235 KOG0551 Hsp90 co-chaperone CNS 98.1 5.3E-05 1.2E-09 59.3 9.7 101 98-198 81-185 (390)
236 KOG3617 WD40 and TPR repeat-co 98.0 0.00044 9.6E-09 60.7 15.7 151 69-232 805-996 (1416)
237 KOG0530 Protein farnesyltransf 98.0 0.0035 7.5E-08 47.9 19.0 184 23-214 44-236 (318)
238 PF07719 TPR_2: Tetratricopept 98.0 2E-05 4.4E-10 40.5 4.7 30 135-164 4-33 (34)
239 PF00515 TPR_1: Tetratricopept 98.0 1.6E-05 3.6E-10 40.9 4.3 31 134-164 3-33 (34)
240 COG2976 Uncharacterized protei 98.0 0.0011 2.3E-08 48.4 14.4 115 82-197 70-190 (207)
241 COG2976 Uncharacterized protei 98.0 0.0023 5.1E-08 46.6 15.8 116 116-235 70-191 (207)
242 KOG0551 Hsp90 co-chaperone CNS 97.9 0.00012 2.7E-09 57.3 9.5 100 133-235 82-185 (390)
243 KOG1585 Protein required for f 97.9 0.0029 6.3E-08 47.8 15.3 162 62-227 69-251 (308)
244 PF02259 FAT: FAT domain; Int 97.8 0.0035 7.6E-08 51.3 17.6 170 61-235 143-341 (352)
245 KOG1308 Hsp70-interacting prot 97.8 1.1E-05 2.5E-10 63.2 2.3 124 103-230 119-242 (377)
246 PF13181 TPR_8: Tetratricopept 97.8 4.9E-05 1.1E-09 39.1 3.9 30 168-197 3-32 (34)
247 COG3118 Thioredoxin domain-con 97.8 0.0033 7.1E-08 49.0 15.2 132 98-235 134-268 (304)
248 KOG1586 Protein required for f 97.8 0.0082 1.8E-07 45.2 17.7 140 62-202 72-231 (288)
249 PF09613 HrpB1_HrpK: Bacterial 97.8 0.001 2.2E-08 47.2 11.4 86 63-148 9-94 (160)
250 KOG1308 Hsp70-interacting prot 97.8 3.2E-05 7E-10 60.8 4.0 93 70-162 120-212 (377)
251 KOG4507 Uncharacterized conser 97.7 0.00016 3.5E-09 60.9 8.0 99 108-206 617-716 (886)
252 PF09613 HrpB1_HrpK: Bacterial 97.7 0.0053 1.2E-07 43.6 14.1 80 104-183 16-95 (160)
253 PF14561 TPR_20: Tetratricopep 97.7 0.00098 2.1E-08 42.8 9.6 75 151-228 7-83 (90)
254 KOG2396 HAT (Half-A-TPR) repea 97.7 0.0011 2.5E-08 54.9 12.0 94 81-174 88-182 (568)
255 PF04910 Tcf25: Transcriptiona 97.7 0.0046 9.9E-08 50.7 15.6 157 75-235 21-225 (360)
256 PF07079 DUF1347: Protein of u 97.7 0.024 5.1E-07 46.9 21.0 73 173-250 469-542 (549)
257 KOG3617 WD40 and TPR repeat-co 97.6 0.0098 2.1E-07 52.7 17.3 161 64-227 858-1104(1416)
258 PF08424 NRDE-2: NRDE-2, neces 97.6 0.014 3E-07 47.3 17.5 118 80-197 47-185 (321)
259 KOG2396 HAT (Half-A-TPR) repea 97.6 0.0021 4.6E-08 53.4 12.5 79 63-141 104-183 (568)
260 KOG1914 mRNA cleavage and poly 97.6 0.017 3.7E-07 48.7 17.7 150 80-232 309-464 (656)
261 PF04781 DUF627: Protein of un 97.6 0.0015 3.2E-08 43.1 9.4 103 70-195 2-107 (111)
262 COG3898 Uncharacterized membra 97.6 0.028 6E-07 45.7 25.0 132 67-198 157-295 (531)
263 COG0790 FOG: TPR repeat, SEL1 97.6 0.025 5.5E-07 45.1 18.7 162 66-234 75-268 (292)
264 KOG2300 Uncharacterized conser 97.5 0.032 6.9E-07 46.6 18.2 164 65-234 324-516 (629)
265 PF13174 TPR_6: Tetratricopept 97.5 0.00025 5.4E-09 36.0 4.3 31 168-198 2-32 (33)
266 PF13181 TPR_8: Tetratricopept 97.5 0.00034 7.3E-09 35.9 4.5 30 134-163 3-32 (34)
267 PF02259 FAT: FAT domain; Int 97.5 0.025 5.5E-07 46.3 17.4 118 129-250 143-304 (352)
268 PF10602 RPN7: 26S proteasome 97.4 0.0072 1.6E-07 44.3 12.4 124 134-260 38-173 (177)
269 PF13176 TPR_7: Tetratricopept 97.4 0.0003 6.4E-09 36.7 3.8 25 169-193 2-26 (36)
270 PRK10941 hypothetical protein; 97.4 0.0039 8.4E-08 48.8 11.5 71 135-205 184-254 (269)
271 TIGR02561 HrpB1_HrpK type III 97.4 0.0043 9.3E-08 43.3 10.3 85 64-148 10-94 (153)
272 PRK15180 Vi polysaccharide bio 97.4 0.0017 3.6E-08 53.9 9.6 127 74-200 299-425 (831)
273 KOG4507 Uncharacterized conser 97.4 0.0017 3.6E-08 55.1 9.8 117 85-201 200-318 (886)
274 COG0790 FOG: TPR repeat, SEL1 97.4 0.044 9.6E-07 43.7 19.1 153 76-234 53-222 (292)
275 PF13174 TPR_6: Tetratricopept 97.4 0.00037 8.1E-09 35.3 3.9 30 135-164 3-32 (33)
276 PF14561 TPR_20: Tetratricopep 97.4 0.0072 1.6E-07 38.8 10.2 73 84-156 8-82 (90)
277 PRK10941 hypothetical protein; 97.3 0.0045 9.7E-08 48.4 10.9 65 168-235 183-247 (269)
278 PF04781 DUF627: Protein of un 97.3 0.0055 1.2E-07 40.5 9.3 46 116-161 62-107 (111)
279 KOG1550 Extracellular protein 97.3 0.057 1.2E-06 47.2 17.9 149 80-234 228-395 (552)
280 KOG3824 Huntingtin interacting 97.2 0.0016 3.5E-08 50.9 6.9 109 104-212 122-235 (472)
281 PF14853 Fis1_TPR_C: Fis1 C-te 97.2 0.0029 6.4E-08 36.0 6.3 36 168-203 3-38 (53)
282 PF13176 TPR_7: Tetratricopept 97.2 0.0013 2.8E-08 34.3 4.5 25 135-159 2-26 (36)
283 TIGR02561 HrpB1_HrpK type III 97.2 0.027 5.8E-07 39.4 12.0 73 143-215 21-93 (153)
284 KOG3824 Huntingtin interacting 97.2 0.0087 1.9E-07 47.0 10.6 69 71-139 123-191 (472)
285 KOG1258 mRNA processing protei 97.1 0.15 3.3E-06 43.7 20.9 179 60-242 293-479 (577)
286 smart00028 TPR Tetratricopepti 97.1 0.0012 2.7E-08 32.7 3.7 30 168-197 3-32 (34)
287 KOG0985 Vesicle coat protein c 97.0 0.079 1.7E-06 48.4 16.3 158 62-248 1102-1259(1666)
288 COG5191 Uncharacterized conser 97.0 0.0015 3.3E-08 51.1 4.9 85 87-171 96-181 (435)
289 PF04910 Tcf25: Transcriptiona 97.0 0.087 1.9E-06 43.4 15.4 140 60-199 36-226 (360)
290 COG5191 Uncharacterized conser 96.9 0.002 4.4E-08 50.4 5.4 78 62-139 105-183 (435)
291 PF14853 Fis1_TPR_C: Fis1 C-te 96.9 0.0076 1.6E-07 34.3 6.2 32 102-133 5-36 (53)
292 KOG1550 Extracellular protein 96.9 0.26 5.7E-06 43.2 19.6 145 65-215 245-412 (552)
293 KOG0529 Protein geranylgeranyl 96.9 0.2 4.3E-06 41.1 17.0 161 38-205 44-234 (421)
294 KOG1839 Uncharacterized protei 96.8 0.032 6.9E-07 51.9 12.7 163 67-232 935-1128(1236)
295 COG3914 Spy Predicted O-linked 96.8 0.1 2.2E-06 44.7 14.2 127 83-209 50-185 (620)
296 KOG1258 mRNA processing protei 96.8 0.31 6.7E-06 41.9 20.9 148 67-215 334-490 (577)
297 COG3914 Spy Predicted O-linked 96.7 0.21 4.6E-06 42.9 15.6 133 113-249 46-187 (620)
298 KOG2300 Uncharacterized conser 96.7 0.18 3.9E-06 42.3 14.8 153 63-215 366-540 (629)
299 smart00028 TPR Tetratricopepti 96.6 0.0053 1.1E-07 30.2 4.0 28 102-129 5-32 (34)
300 PF10602 RPN7: 26S proteasome 96.6 0.067 1.5E-06 39.2 11.1 98 99-196 37-143 (177)
301 PRK15180 Vi polysaccharide bio 96.6 0.028 6E-07 47.0 9.5 124 109-235 300-423 (831)
302 KOG1310 WD40 repeat protein [G 96.5 0.011 2.5E-07 49.6 7.3 92 108-199 384-478 (758)
303 COG4976 Predicted methyltransf 96.5 0.0049 1.1E-07 46.2 4.7 59 108-166 5-63 (287)
304 PF07079 DUF1347: Protein of u 96.5 0.3 6.4E-06 40.8 15.0 121 69-192 384-521 (549)
305 COG4649 Uncharacterized protei 96.5 0.18 4E-06 36.4 15.9 135 74-209 68-209 (221)
306 PF12968 DUF3856: Domain of Un 96.5 0.13 2.8E-06 34.6 10.5 85 109-193 20-127 (144)
307 KOG3364 Membrane protein invol 96.4 0.075 1.6E-06 36.5 9.3 54 115-168 52-107 (149)
308 COG4976 Predicted methyltransf 96.3 0.011 2.4E-07 44.4 5.5 61 141-201 4-64 (287)
309 PF08631 SPO22: Meiosis protei 96.3 0.39 8.4E-06 38.1 14.7 124 74-197 3-152 (278)
310 KOG3364 Membrane protein invol 96.3 0.093 2E-06 36.1 9.4 73 132-204 32-109 (149)
311 PF08631 SPO22: Meiosis protei 96.2 0.44 9.6E-06 37.8 18.1 153 43-195 9-186 (278)
312 KOG1310 WD40 repeat protein [G 96.2 0.028 6.1E-07 47.4 7.7 98 70-167 380-480 (758)
313 KOG4814 Uncharacterized conser 96.1 0.1 2.2E-06 45.2 10.7 97 65-161 355-457 (872)
314 PF09986 DUF2225: Uncharacteri 96.1 0.095 2.1E-06 39.7 9.7 28 99-126 166-193 (214)
315 PF04053 Coatomer_WDAD: Coatom 96.1 0.31 6.6E-06 41.4 13.6 118 73-215 270-388 (443)
316 KOG2422 Uncharacterized conser 96.0 0.87 1.9E-05 39.3 17.6 158 77-235 251-451 (665)
317 PF13374 TPR_10: Tetratricopep 96.0 0.021 4.6E-07 30.4 4.4 28 168-195 4-31 (42)
318 KOG4814 Uncharacterized conser 96.0 0.14 2.9E-06 44.5 10.8 95 135-232 357-457 (872)
319 KOG1464 COP9 signalosome, subu 95.9 0.57 1.2E-05 36.5 13.8 172 76-250 39-238 (440)
320 COG2912 Uncharacterized conser 95.9 0.1 2.2E-06 40.5 9.1 69 136-204 185-253 (269)
321 PF09986 DUF2225: Uncharacteri 95.9 0.099 2.2E-06 39.6 9.0 84 112-195 91-194 (214)
322 KOG3616 Selective LIM binding 95.9 0.49 1.1E-05 42.1 13.8 140 65-215 662-839 (1636)
323 PRK13184 pknD serine/threonine 95.8 0.26 5.6E-06 45.6 12.7 98 71-169 482-589 (932)
324 COG4649 Uncharacterized protei 95.8 0.48 1E-05 34.3 13.8 124 105-231 65-195 (221)
325 KOG0529 Protein geranylgeranyl 95.8 0.68 1.5E-05 38.2 13.5 161 75-235 39-227 (421)
326 COG2909 MalT ATP-dependent tra 95.6 1.7 3.7E-05 39.5 19.9 166 65-233 459-648 (894)
327 PF11207 DUF2989: Protein of u 95.6 0.26 5.7E-06 36.6 9.7 71 115-186 123-198 (203)
328 PF07720 TPR_3: Tetratricopept 95.4 0.073 1.6E-06 27.5 4.8 32 167-198 2-35 (36)
329 PF13374 TPR_10: Tetratricopep 95.4 0.052 1.1E-06 28.8 4.6 29 133-161 3-31 (42)
330 COG3629 DnrI DNA-binding trans 95.4 0.14 3E-06 40.3 8.3 59 168-229 155-213 (280)
331 PRK13184 pknD serine/threonine 95.3 0.32 6.8E-06 45.0 11.4 126 104-235 481-623 (932)
332 COG2912 Uncharacterized conser 95.3 0.21 4.6E-06 38.8 8.8 64 169-235 184-247 (269)
333 KOG1914 mRNA cleavage and poly 95.1 1.9 4.2E-05 37.0 18.6 152 80-234 347-503 (656)
334 COG3629 DnrI DNA-binding trans 95.1 0.2 4.3E-06 39.4 8.3 64 132-195 153-216 (280)
335 PF15015 NYD-SP12_N: Spermatog 95.0 0.19 4E-06 41.5 8.0 85 105-189 183-285 (569)
336 COG5107 RNA14 Pre-mRNA 3'-end 95.0 1.9 4.1E-05 36.3 13.7 161 66-232 304-495 (660)
337 PF10579 Rapsyn_N: Rapsyn N-te 94.8 0.43 9.4E-06 29.5 7.6 51 141-191 15-68 (80)
338 PF10345 Cohesin_load: Cohesin 94.8 2.8 6.2E-05 37.4 17.8 145 81-229 38-205 (608)
339 KOG3616 Selective LIM binding 94.8 1.3 2.9E-05 39.5 13.1 141 77-231 745-910 (1636)
340 KOG0890 Protein kinase of the 94.8 3.2 7E-05 42.0 16.7 138 58-197 1664-1835(2382)
341 PF04053 Coatomer_WDAD: Coatom 94.6 1.5 3.3E-05 37.2 13.1 131 67-229 298-428 (443)
342 PF12862 Apc5: Anaphase-promot 94.5 0.3 6.6E-06 31.6 7.0 27 135-161 44-70 (94)
343 KOG4014 Uncharacterized conser 94.5 1.4 3E-05 32.3 13.2 149 77-233 48-234 (248)
344 PF12862 Apc5: Anaphase-promot 94.5 0.38 8.3E-06 31.1 7.3 56 73-128 7-71 (94)
345 KOG2581 26S proteasome regulat 94.3 1.6 3.4E-05 36.1 11.7 129 71-199 133-280 (493)
346 KOG2422 Uncharacterized conser 94.3 3.3 7.2E-05 35.9 16.1 137 60-197 280-450 (665)
347 PF15015 NYD-SP12_N: Spermatog 94.2 2.6 5.6E-05 35.2 12.7 88 71-158 183-288 (569)
348 PF10373 EST1_DNA_bind: Est1 D 94.1 0.29 6.3E-06 38.6 7.6 62 117-178 1-62 (278)
349 COG3947 Response regulator con 94.1 0.27 5.8E-06 38.6 6.8 59 169-230 282-340 (361)
350 PF12968 DUF3856: Domain of Un 94.0 1.2 2.6E-05 30.1 12.3 90 140-232 17-129 (144)
351 PF10516 SHNi-TPR: SHNi-TPR; 93.9 0.12 2.6E-06 27.1 3.3 26 169-194 4-29 (38)
352 PF09670 Cas_Cas02710: CRISPR- 93.9 1.8 4E-05 36.0 11.9 60 68-127 135-198 (379)
353 KOG4279 Serine/threonine prote 93.9 1.2 2.5E-05 39.9 10.9 133 77-210 256-410 (1226)
354 COG3947 Response regulator con 93.9 0.46 1E-05 37.4 7.7 54 138-191 285-338 (361)
355 PF11207 DUF2989: Protein of u 93.7 1.5 3.3E-05 32.7 9.8 72 148-223 122-198 (203)
356 PF07721 TPR_4: Tetratricopept 93.7 0.13 2.8E-06 24.3 3.0 19 102-120 5-23 (26)
357 PF10345 Cohesin_load: Cohesin 93.5 5.4 0.00012 35.7 20.1 152 41-193 35-206 (608)
358 COG2909 MalT ATP-dependent tra 93.5 6 0.00013 36.2 20.5 201 24-229 459-685 (894)
359 KOG0985 Vesicle coat protein c 93.4 6.9 0.00015 36.7 20.5 154 62-227 1131-1336(1666)
360 KOG1839 Uncharacterized protei 93.4 1 2.2E-05 42.5 10.2 138 57-194 966-1127(1236)
361 PF10373 EST1_DNA_bind: Est1 D 93.3 0.44 9.5E-06 37.6 7.3 62 83-144 1-62 (278)
362 smart00386 HAT HAT (Half-A-TPR 93.3 0.33 7E-06 23.8 4.4 25 148-172 3-27 (33)
363 PF00244 14-3-3: 14-3-3 protei 93.2 3.1 6.7E-05 32.1 13.6 162 67-231 4-197 (236)
364 PF07721 TPR_4: Tetratricopept 93.1 0.2 4.2E-06 23.6 3.1 21 203-226 4-24 (26)
365 PF07720 TPR_3: Tetratricopept 93.1 0.5 1.1E-05 24.4 4.8 20 135-154 4-23 (36)
366 KOG2041 WD40 repeat protein [G 93.1 2.4 5.3E-05 37.7 11.5 24 134-157 798-821 (1189)
367 KOG0890 Protein kinase of the 93.1 6 0.00013 40.2 15.2 147 59-207 1627-1796(2382)
368 PF10516 SHNi-TPR: SHNi-TPR; 93.0 0.18 3.9E-06 26.4 3.0 30 201-233 2-31 (38)
369 PF10579 Rapsyn_N: Rapsyn N-te 92.8 1.4 3.1E-05 27.3 7.3 60 170-232 10-72 (80)
370 COG5536 BET4 Protein prenyltra 92.6 4.2 9E-05 32.0 11.0 163 81-244 49-233 (328)
371 PF11817 Foie-gras_1: Foie gra 92.6 2.2 4.7E-05 33.2 10.0 79 147-228 153-243 (247)
372 smart00386 HAT HAT (Half-A-TPR 92.5 0.44 9.5E-06 23.3 4.3 27 79-105 2-28 (33)
373 KOG2581 26S proteasome regulat 92.1 6.1 0.00013 32.9 13.0 127 106-235 134-279 (493)
374 COG4455 ImpE Protein of avirul 91.6 1.3 2.7E-05 33.5 7.0 63 139-201 8-70 (273)
375 KOG3807 Predicted membrane pro 91.3 6.8 0.00015 31.7 11.4 105 109-215 195-326 (556)
376 PF10255 Paf67: RNA polymerase 91.2 4.3 9.3E-05 34.0 10.5 59 135-193 125-191 (404)
377 COG4455 ImpE Protein of avirul 91.1 2.8 6.1E-05 31.8 8.4 63 105-167 8-70 (273)
378 COG5107 RNA14 Pre-mRNA 3'-end 91.1 8.7 0.00019 32.6 15.3 141 58-199 36-194 (660)
379 PF10255 Paf67: RNA polymerase 91.0 8.5 0.00018 32.3 16.0 139 60-198 69-231 (404)
380 PF13226 DUF4034: Domain of un 91.0 6.7 0.00014 31.1 11.3 74 71-144 7-89 (277)
381 COG5536 BET4 Protein prenyltra 90.4 7.4 0.00016 30.7 13.9 163 39-208 48-235 (328)
382 PF11817 Foie-gras_1: Foie gra 90.2 4.6 0.0001 31.4 9.6 81 113-193 153-245 (247)
383 KOG0546 HSP90 co-chaperone CPR 90.0 0.67 1.4E-05 37.4 4.7 79 134-212 277-355 (372)
384 KOG2041 WD40 repeat protein [G 89.9 9 0.00019 34.4 11.6 82 98-191 796-877 (1189)
385 PF12854 PPR_1: PPR repeat 89.8 1.2 2.5E-05 22.5 4.1 24 133-156 8-31 (34)
386 KOG3807 Predicted membrane pro 89.7 9.7 0.00021 30.9 16.9 172 68-242 188-400 (556)
387 KOG4279 Serine/threonine prote 89.7 2.5 5.5E-05 37.9 8.2 168 63-235 200-398 (1226)
388 KOG2114 Vacuolar assembly/sort 89.7 7 0.00015 35.6 10.9 58 70-127 340-397 (933)
389 COG1747 Uncharacterized N-term 89.4 13 0.00029 32.1 19.4 160 70-235 72-291 (711)
390 TIGR03504 FimV_Cterm FimV C-te 89.2 1 2.2E-05 24.5 3.7 25 170-194 3-27 (44)
391 PF14863 Alkyl_sulf_dimr: Alky 89.2 2.6 5.6E-05 29.6 6.7 49 167-215 71-119 (141)
392 PF09797 NatB_MDM20: N-acetylt 88.9 4.1 8.9E-05 33.8 8.9 46 79-124 198-243 (365)
393 PF12854 PPR_1: PPR repeat 88.6 1.5 3.3E-05 22.1 4.0 27 165-191 6-32 (34)
394 PF14863 Alkyl_sulf_dimr: Alky 88.5 2.7 5.8E-05 29.5 6.4 46 68-113 74-119 (141)
395 TIGR03504 FimV_Cterm FimV C-te 88.5 1.3 2.9E-05 24.0 3.9 25 102-126 3-27 (44)
396 COG4941 Predicted RNA polymera 88.1 13 0.00028 30.3 15.3 152 80-235 212-397 (415)
397 cd00280 TRFH Telomeric Repeat 88.0 8.8 0.00019 28.3 14.3 115 27-144 20-156 (200)
398 KOG0686 COP9 signalosome, subu 87.7 15 0.00033 30.7 12.3 95 133-230 151-256 (466)
399 PF09797 NatB_MDM20: N-acetylt 87.3 5.3 0.00011 33.2 8.6 46 112-157 197-242 (365)
400 PF13041 PPR_2: PPR repeat fam 87.1 3.5 7.6E-05 22.7 6.1 15 110-124 15-29 (50)
401 COG1747 Uncharacterized N-term 86.7 20 0.00044 31.1 22.3 149 95-247 63-248 (711)
402 KOG2758 Translation initiation 85.8 17 0.00037 29.4 17.0 173 57-232 122-317 (432)
403 KOG1464 COP9 signalosome, subu 85.6 16 0.00035 28.9 12.6 192 36-233 40-261 (440)
404 PF13226 DUF4034: Domain of un 85.3 17 0.00037 28.9 9.9 28 83-110 62-89 (277)
405 KOG0686 COP9 signalosome, subu 85.3 21 0.00045 29.9 10.5 95 63-159 149-256 (466)
406 COG4941 Predicted RNA polymera 84.8 20 0.00043 29.3 14.8 128 78-206 270-405 (415)
407 PF09670 Cas_Cas02710: CRISPR- 84.2 24 0.00051 29.6 12.3 60 102-161 135-198 (379)
408 PF01535 PPR: PPR repeat; Int 83.9 2.4 5.2E-05 20.2 3.3 22 171-192 5-26 (31)
409 PF13041 PPR_2: PPR repeat fam 83.8 5.4 0.00012 21.9 5.8 28 168-195 5-32 (50)
410 KOG1538 Uncharacterized conser 83.8 32 0.0007 30.9 14.3 50 174-229 781-830 (1081)
411 KOG3677 RNA polymerase I-assoc 83.7 25 0.00055 29.5 11.3 57 134-194 237-300 (525)
412 smart00299 CLH Clathrin heavy 83.3 13 0.00028 25.8 15.0 47 75-122 18-64 (140)
413 KOG0128 RNA-binding protein SA 82.9 39 0.00084 31.1 16.0 50 87-136 102-151 (881)
414 KOG0276 Vesicle coat complex C 82.6 14 0.00031 32.6 8.9 131 75-230 597-748 (794)
415 PF10952 DUF2753: Protein of u 81.4 15 0.00031 25.2 7.3 26 136-161 5-30 (140)
416 PF09205 DUF1955: Domain of un 81.3 14 0.00031 25.7 7.0 53 174-229 94-146 (161)
417 PF08311 Mad3_BUB1_I: Mad3/BUB 81.3 15 0.00032 25.2 12.5 76 146-230 40-126 (126)
418 KOG1538 Uncharacterized conser 81.1 8.6 0.00019 34.2 7.3 77 103-190 752-828 (1081)
419 KOG0276 Vesicle coat complex C 81.0 40 0.00087 30.0 11.3 26 133-158 667-692 (794)
420 KOG3783 Uncharacterized conser 80.7 34 0.00074 29.7 10.5 113 81-195 250-375 (546)
421 KOG1497 COP9 signalosome, subu 80.6 29 0.00063 28.1 10.8 96 99-194 104-212 (399)
422 KOG0687 26S proteasome regulat 80.5 30 0.00064 28.2 14.9 98 133-234 105-212 (393)
423 TIGR00756 PPR pentatricopeptid 80.2 5.2 0.00011 19.5 3.8 24 69-92 5-28 (35)
424 PF12739 TRAPPC-Trs85: ER-Golg 80.1 36 0.00078 28.9 16.0 154 65-235 209-402 (414)
425 PF11846 DUF3366: Domain of un 79.5 10 0.00022 28.2 6.6 32 132-163 144-175 (193)
426 PF13812 PPR_3: Pentatricopept 79.1 5.9 0.00013 19.3 4.3 27 66-92 3-29 (34)
427 KOG0546 HSP90 co-chaperone CPR 79.1 2.2 4.7E-05 34.6 3.0 112 71-182 229-359 (372)
428 KOG1463 26S proteasome regulat 78.9 34 0.00075 28.0 13.7 165 69-234 133-318 (411)
429 PF04190 DUF410: Protein of un 78.1 31 0.00068 27.1 17.4 35 195-232 135-170 (260)
430 PF14852 Fis1_TPR_N: Fis1 N-te 78.1 6 0.00013 20.2 3.5 33 201-233 2-34 (35)
431 PHA02537 M terminase endonucle 77.7 2.9 6.4E-05 32.0 3.2 20 109-128 94-113 (230)
432 PRK11619 lytic murein transgly 77.4 56 0.0012 29.6 18.2 154 74-232 251-436 (644)
433 PF04190 DUF410: Protein of un 76.5 35 0.00076 26.8 18.1 186 64-250 10-240 (260)
434 TIGR02710 CRISPR-associated pr 76.4 44 0.00096 27.9 12.5 54 70-123 136-196 (380)
435 cd02682 MIT_AAA_Arch MIT: doma 76.0 6.7 0.00015 24.1 3.9 23 103-125 11-33 (75)
436 KOG2114 Vacuolar assembly/sort 75.8 34 0.00073 31.6 9.4 105 104-215 340-446 (933)
437 PF11846 DUF3366: Domain of un 75.4 14 0.00031 27.3 6.5 44 187-234 132-175 (193)
438 COG5159 RPN6 26S proteasome re 74.6 43 0.00092 26.8 13.2 159 69-230 8-192 (421)
439 PHA02537 M terminase endonucle 74.2 6.5 0.00014 30.1 4.3 97 139-235 90-210 (230)
440 PRK15490 Vi polysaccharide bio 74.1 35 0.00075 30.3 9.0 80 109-190 19-98 (578)
441 KOG4151 Myosin assembly protei 71.4 25 0.00053 32.0 7.6 95 106-200 61-161 (748)
442 KOG0687 26S proteasome regulat 71.1 56 0.0012 26.7 11.6 100 63-162 103-211 (393)
443 PRK15490 Vi polysaccharide bio 70.9 46 0.00099 29.6 9.0 58 97-156 41-98 (578)
444 cd00280 TRFH Telomeric Repeat 70.4 41 0.00089 24.9 8.6 63 115-178 86-156 (200)
445 PF04840 Vps16_C: Vps16, C-ter 70.2 58 0.0013 26.6 12.0 97 109-225 188-284 (319)
446 COG5187 RPN7 26S proteasome re 70.0 56 0.0012 26.3 11.8 100 63-162 114-222 (412)
447 PF02184 HAT: HAT (Half-A-TPR) 69.7 13 0.00027 18.7 3.6 16 182-197 3-18 (32)
448 PF12739 TRAPPC-Trs85: ER-Golg 68.8 72 0.0016 27.1 11.3 96 134-232 210-329 (414)
449 smart00101 14_3_3 14-3-3 homol 67.8 56 0.0012 25.5 17.1 159 68-231 5-199 (244)
450 cd02677 MIT_SNX15 MIT: domain 67.5 12 0.00025 23.1 3.6 14 180-193 20-33 (75)
451 cd02679 MIT_spastin MIT: domai 67.2 14 0.0003 23.1 3.9 14 182-195 5-18 (79)
452 COG4259 Uncharacterized protei 66.7 34 0.00073 22.5 6.6 37 132-168 72-108 (121)
453 PF10037 MRP-S27: Mitochondria 66.5 83 0.0018 26.9 11.5 85 110-196 78-168 (429)
454 KOG4014 Uncharacterized conser 66.4 52 0.0011 24.5 14.1 160 22-195 34-233 (248)
455 PF12753 Nro1: Nuclear pore co 66.0 14 0.0003 30.7 4.7 54 180-235 332-394 (404)
456 cd02680 MIT_calpain7_2 MIT: do 65.7 14 0.0003 22.8 3.7 19 177-195 17-35 (75)
457 KOG4521 Nuclear pore complex, 65.3 99 0.0022 30.0 10.2 115 97-215 919-1069(1480)
458 COG5159 RPN6 26S proteasome re 65.3 71 0.0015 25.7 11.3 126 102-230 7-152 (421)
459 cd02682 MIT_AAA_Arch MIT: doma 64.6 31 0.00067 21.3 6.5 28 65-92 7-34 (75)
460 PF04212 MIT: MIT (microtubule 63.8 23 0.0005 21.1 4.4 18 176-193 15-32 (69)
461 KOG2063 Vacuolar assembly/sort 63.5 1.3E+02 0.0027 28.5 10.6 112 101-212 507-638 (877)
462 PF00244 14-3-3: 14-3-3 protei 63.0 69 0.0015 24.8 11.4 150 101-250 4-176 (236)
463 PF04212 MIT: MIT (microtubule 62.7 19 0.0004 21.5 3.9 21 106-126 13-33 (69)
464 PF08238 Sel1: Sel1 repeat; I 62.4 19 0.00041 18.1 3.9 15 218-232 23-37 (39)
465 COG4259 Uncharacterized protei 62.3 42 0.00091 22.0 6.3 36 63-98 71-106 (121)
466 TIGR02498 type_III_ssaH type I 62.3 35 0.00076 21.1 7.0 58 66-123 8-65 (79)
467 PF10952 DUF2753: Protein of u 61.6 50 0.0011 22.7 6.7 27 101-127 4-30 (140)
468 PF07219 HemY_N: HemY protein 61.2 45 0.00098 22.1 6.7 43 172-214 65-107 (108)
469 PF02064 MAS20: MAS20 protein 60.9 27 0.00058 23.9 4.7 27 138-164 69-95 (121)
470 PF02064 MAS20: MAS20 protein 60.7 26 0.00057 23.9 4.6 29 171-199 68-96 (121)
471 cd02681 MIT_calpain7_1 MIT: do 59.7 26 0.00056 21.7 4.1 22 105-126 13-34 (76)
472 PF04348 LppC: LppC putative l 59.5 3 6.6E-05 36.5 0.0 98 61-158 21-124 (536)
473 PF07219 HemY_N: HemY protein 59.3 49 0.0011 21.9 6.9 25 103-127 64-88 (108)
474 KOG1463 26S proteasome regulat 58.6 1E+02 0.0023 25.4 13.2 159 70-231 10-196 (411)
475 smart00671 SEL1 Sel1-like repe 58.6 21 0.00046 17.5 3.8 30 202-231 3-33 (36)
476 PF15297 CKAP2_C: Cytoskeleton 58.5 93 0.002 25.7 8.0 49 82-130 121-172 (353)
477 cd02681 MIT_calpain7_1 MIT: do 58.0 31 0.00067 21.3 4.3 19 176-194 16-34 (76)
478 KOG2063 Vacuolar assembly/sort 57.6 1.7E+02 0.0038 27.7 15.5 162 67-231 507-712 (877)
479 KOG4151 Myosin assembly protei 57.5 58 0.0013 29.8 7.3 94 139-235 60-159 (748)
480 COG5187 RPN7 26S proteasome re 57.0 1E+02 0.0022 24.8 13.1 99 133-234 116-223 (412)
481 PF12583 TPPII_N: Tripeptidyl 56.5 60 0.0013 22.5 5.7 34 109-142 87-120 (139)
482 PF12753 Nro1: Nuclear pore co 54.7 31 0.00068 28.8 4.9 31 80-110 130-160 (404)
483 PF05053 Menin: Menin; InterP 52.7 1.7E+02 0.0037 26.0 10.9 79 67-160 260-346 (618)
484 PF05053 Menin: Menin; InterP 52.4 1.7E+02 0.0037 26.0 9.9 67 113-194 275-346 (618)
485 KOG2561 Adaptor protein NUB1, 51.4 1.3E+02 0.0029 25.8 7.9 25 170-194 271-295 (568)
486 KOG0292 Vesicle coat complex C 50.9 2.3E+02 0.0049 27.0 10.9 27 69-95 996-1022(1202)
487 PF12583 TPPII_N: Tripeptidyl 50.9 82 0.0018 21.9 5.6 34 142-175 86-119 (139)
488 KOG0128 RNA-binding protein SA 50.4 2.2E+02 0.0047 26.6 21.6 138 58-196 107-261 (881)
489 PF14929 TAF1_subA: TAF RNA Po 50.0 1.9E+02 0.0041 25.8 17.2 133 78-215 272-427 (547)
490 smart00299 CLH Clathrin heavy 49.8 83 0.0018 21.6 12.4 104 108-228 17-121 (140)
491 PF09477 Type_III_YscG: Bacter 48.9 79 0.0017 21.2 10.9 84 69-157 11-94 (116)
492 KOG2561 Adaptor protein NUB1, 48.8 1.4E+02 0.0031 25.5 7.8 107 55-161 148-296 (568)
493 TIGR03362 VI_chp_7 type VI sec 48.7 1.4E+02 0.0031 24.1 16.5 163 58-232 94-279 (301)
494 PF01239 PPTA: Protein prenylt 48.7 32 0.0007 16.6 4.2 13 157-169 8-20 (31)
495 PRK10564 maltose regulon perip 48.4 1E+02 0.0022 24.9 6.7 44 57-100 250-293 (303)
496 KOG2066 Vacuolar assembly/sort 45.6 2.6E+02 0.0055 26.1 10.7 52 74-125 366-419 (846)
497 KOG0292 Vesicle coat complex C 45.5 56 0.0012 30.6 5.4 53 131-191 671-723 (1202)
498 KOG4459 Membrane-associated pr 44.8 66 0.0014 27.5 5.4 88 100-193 135-222 (471)
499 PF12921 ATP13: Mitochondrial 44.8 1E+02 0.0022 21.2 8.8 43 133-175 53-97 (126)
500 smart00745 MIT Microtubule Int 44.7 64 0.0014 19.6 4.3 15 179-193 21-35 (77)
No 1
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.5e-31 Score=195.93 Aligned_cols=237 Identities=49% Similarity=0.778 Sum_probs=223.3
Q ss_pred CcchhhHHHHHHHHhhhcCCCccHHHHHHHHHHhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCCh
Q 024712 1 MVTKTEETQLNRLENQVDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCL 80 (263)
Q Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 80 (263)
|+++....+.++++.+.+ .||+-..++++++++++..++...+.. .++|+.|.+++++..+.+..|..
T Consensus 1 ~~t~~~~~~~~~l~~~~~-----------~wr~~~~rnseevv~l~~~~~~~~k~~-~~g~e~w~l~EqV~IAAld~~~~ 68 (289)
T KOG3060|consen 1 MVTELEDVSWEELRDQMR-----------KWREETVRNSEEVVQLGSEVLNYSKSG-ALGDEIWTLYEQVFIAALDTGRD 68 (289)
T ss_pred CcchHHHHHHHHHHHHHH-----------HHHhccccCHHHHHHHHHHHHHHhhhc-ccCchHHHHHHHHHHHHHHhcch
Confidence 678888888888887744 789999999999999999999773333 58999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 024712 81 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE 160 (263)
Q Consensus 81 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 160 (263)
+-|..+++++...+|++.++....|..+...|.+++|+++|+..++.+|.+..++.....+...+|+..+|++.+...++
T Consensus 69 ~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~ 148 (289)
T KOG3060|consen 69 DLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLD 148 (289)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhH
Q 024712 161 TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKA 240 (263)
Q Consensus 161 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~ 240 (263)
.++.|.++|..++.+|+..|+|++|.-|+++++-++|.++..+..+|++++..|..++++-|.++|.++++++|. +.++
T Consensus 149 ~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~-~~ra 227 (289)
T KOG3060|consen 149 KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK-NLRA 227 (289)
T ss_pred HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH-hHHH
Confidence 999999999999999999999999999999999999999999999999999999888899999999999999995 9999
Q ss_pred HHhHHHHHhh
Q 024712 241 LFGICLVMFV 250 (263)
Q Consensus 241 ~~~l~~~~~~ 250 (263)
++|+.+|+..
T Consensus 228 l~GI~lc~~~ 237 (289)
T KOG3060|consen 228 LFGIYLCGSA 237 (289)
T ss_pred HHHHHHHHHH
Confidence 9999999765
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=4.9e-25 Score=179.99 Aligned_cols=192 Identities=22% Similarity=0.248 Sum_probs=182.6
Q ss_pred cccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHH
Q 024712 55 KRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL 134 (263)
Q Consensus 55 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 134 (263)
+...+.|..+.+|.++|.++-+.|+..+|..+|++++...|+.+++..++|.++...|.+++|..+|.++++..|....+
T Consensus 311 ral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa 390 (966)
T KOG4626|consen 311 RALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAA 390 (966)
T ss_pred HHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhh
Confidence 45666999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 024712 135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214 (263)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 214 (263)
+.++|.+|..+|++++|+.+|+.++++.|..++++.++|+.|..+|+.+.|+.+|.+++..+|...+++.+||.+|...|
T Consensus 391 ~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsG 470 (966)
T KOG4626|consen 391 HNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSG 470 (966)
T ss_pred hhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 215 GVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 215 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
+ ..+|+..|+.++++.|+ .+.+.-.+..|..-
T Consensus 471 n---i~~AI~sY~~aLklkPD-fpdA~cNllh~lq~ 502 (966)
T KOG4626|consen 471 N---IPEAIQSYRTALKLKPD-FPDAYCNLLHCLQI 502 (966)
T ss_pred C---cHHHHHHHHHHHccCCC-CchhhhHHHHHHHH
Confidence 9 99999999999999997 77777777777655
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=3.6e-25 Score=180.79 Aligned_cols=175 Identities=19% Similarity=0.197 Sum_probs=85.2
Q ss_pred cccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHH
Q 024712 57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHK 136 (263)
Q Consensus 57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 136 (263)
..++|....+|.++|.++...+.+++|+..|.+++...|+++.++-++|.+|...|..+-|+..|+++++..|..++++.
T Consensus 245 vkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~ 324 (966)
T KOG4626|consen 245 VKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYN 324 (966)
T ss_pred hcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHh
Confidence 34455555555555555555555555555554444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCC
Q 024712 137 RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGV 216 (263)
Q Consensus 137 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 216 (263)
++|..+...|+..+|..+|++++.+.|+.+++..+||++|..+|.++.|..+|.+++...|....++.+||.+|...|+
T Consensus 325 NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgn- 403 (966)
T KOG4626|consen 325 NLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGN- 403 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhccc-
Confidence 4444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred CcHHHHHHHHHHhhccCC
Q 024712 217 DNILLAKKYYASTIDLTG 234 (263)
Q Consensus 217 ~~~~~A~~~~~~al~~~~ 234 (263)
+++|+.+|+.++.+.|
T Consensus 404 --l~~Ai~~YkealrI~P 419 (966)
T KOG4626|consen 404 --LDDAIMCYKEALRIKP 419 (966)
T ss_pred --HHHHHHHHHHHHhcCc
Confidence 4444444444444444
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=2.7e-22 Score=174.99 Aligned_cols=191 Identities=14% Similarity=-0.007 Sum_probs=176.8
Q ss_pred ChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHH
Q 024712 38 RPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEA 117 (263)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A 117 (263)
..++++......+.. ....|....++..+|.++...|++++|+..++++++.+|+.+..+..+|.++...|++++|
T Consensus 309 ~y~~A~~~~~~al~~----~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 309 SYEEAARAFEKALDL----GKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hHHHHHHHHHHHHhc----CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 344455555544433 1345777888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC
Q 024712 118 EKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 197 (263)
Q Consensus 118 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 197 (263)
+..|++++..+|+++.++..+|.++...|++++|+..|++++.++|++..++..+|.++...|++++|+..|++++...|
T Consensus 385 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P 464 (615)
T TIGR00990 385 EEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP 464 (615)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 198 TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 198 ~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
+++.++..+|.++...|+ +++|+..|++++.++|.
T Consensus 465 ~~~~~~~~lg~~~~~~g~---~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 465 EAPDVYNYYGELLLDQNK---FDEAIEKFDTAIELEKE 499 (615)
T ss_pred CChHHHHHHHHHHHHccC---HHHHHHHHHHHHhcCCc
Confidence 999999999999999999 99999999999999886
No 5
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.3e-23 Score=172.85 Aligned_cols=188 Identities=17% Similarity=0.085 Sum_probs=178.5
Q ss_pred cCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHH
Q 024712 59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR 138 (263)
Q Consensus 59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 138 (263)
.+|+.+..|..+|.++.-+++++.|+++|+++++.+|+...++..+|.-+....++++|..+|++++..+|.+..+|+.+
T Consensus 416 ~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGl 495 (638)
T KOG1126|consen 416 TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGL 495 (638)
T ss_pred hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhh
Confidence 37788888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCc
Q 024712 139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDN 218 (263)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 218 (263)
|.+|.++++++.|.-.|++|++++|.+..+...+|.++...|+.++|+.+|++|+.++|.++...+..|.+++.+++
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~--- 572 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGR--- 572 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 219 ILLAKKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 219 ~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
+++|+..+++.-++.|+ +...++-++..+..
T Consensus 573 ~~eal~~LEeLk~~vP~-es~v~~llgki~k~ 603 (638)
T KOG1126|consen 573 YVEALQELEELKELVPQ-ESSVFALLGKIYKR 603 (638)
T ss_pred hHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHH
Confidence 99999999999999997 66666666665544
No 6
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.91 E-value=4.5e-22 Score=144.66 Aligned_cols=189 Identities=16% Similarity=0.139 Sum_probs=170.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024712 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA 142 (263)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 142 (263)
...+..++|..|+..|++..|...++++++.+|++..++..++.+|...|+.+.|-+.|+++++++|++.+++++.|..+
T Consensus 34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FL 113 (250)
T COG3063 34 AAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHH
Confidence 56678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCChhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHH
Q 024712 143 KAQGNFPTAIEWLNKYLET--FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL 220 (263)
Q Consensus 143 ~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~ 220 (263)
+.+|++++|...|++++.. .|..+..|.++|.|..+.|+++.|..+|+++++.+|+++.....++..++..|+ +-
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~---y~ 190 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGD---YA 190 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhccc---ch
Confidence 9999999999999999974 456678999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHhhccCCCcchhHHHhHHHHHhhchhh
Q 024712 221 LAKKYYASTIDLTGGKNTKALFGICLVMFVCHST 254 (263)
Q Consensus 221 ~A~~~~~~al~~~~~~~~~~~~~l~~~~~~~~~~ 254 (263)
.|..++++.....+..-...|.|+-+........
T Consensus 191 ~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~ 224 (250)
T COG3063 191 PARLYLERYQQRGGAQAESLLLGIRIAKRLGDRA 224 (250)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHhccHH
Confidence 9999999988776643334445655554443333
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=3.1e-21 Score=168.37 Aligned_cols=202 Identities=14% Similarity=0.120 Sum_probs=171.8
Q ss_pred ChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHH
Q 024712 38 RPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEA 117 (263)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A 117 (263)
+.++++......+. ++|.....+..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|
T Consensus 346 ~~~eA~~~~~kal~-------l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 418 (615)
T TIGR00990 346 KHLEALADLSKSIE-------LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQA 418 (615)
T ss_pred CHHHHHHHHHHHHH-------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 34444444444443 37888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC
Q 024712 118 EKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 197 (263)
Q Consensus 118 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 197 (263)
+..|++++..+|++..++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..|++++.+.|
T Consensus 419 ~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 419 GKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEK 498 (615)
T ss_pred HHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCHHH------HHHHHHHHH-hcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 198 TVPLY------HLAYADVLY-TLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 198 ~~~~~------~~~la~~~~-~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
.+... +...+.+++ ..|+ +++|...++++++++|+ +..++..++.+...
T Consensus 499 ~~~~~~~~~~~l~~~a~~~~~~~~~---~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~ 554 (615)
T TIGR00990 499 ETKPMYMNVLPLINKALALFQWKQD---FIEAENLCEKALIIDPE-CDIAVATMAQLLLQ 554 (615)
T ss_pred ccccccccHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHH
Confidence 65332 223333333 3688 99999999999999986 66666666665554
No 8
>PRK12370 invasion protein regulator; Provisional
Probab=99.89 E-value=1.1e-20 Score=162.40 Aligned_cols=185 Identities=12% Similarity=-0.017 Sum_probs=164.8
Q ss_pred cccCcchHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Q 024712 57 SALGPDVWTLYEQVSIAAMDC---------QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED 127 (263)
Q Consensus 57 ~~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 127 (263)
..++|+...++..+|.++... +++++|...++++++.+|+++.++..+|.++...|++++|+..|++++++
T Consensus 288 l~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l 367 (553)
T PRK12370 288 VNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL 367 (553)
T ss_pred HhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 345888888888888776532 45899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Q 024712 128 NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-PTVPLYHLAY 206 (263)
Q Consensus 128 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 206 (263)
+|+++.++..+|.++...|++++|+..++++++++|.++..+..++.+++..|++++|+..+++++... |+++..+..+
T Consensus 368 ~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~l 447 (553)
T PRK12370 368 SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQ 447 (553)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHH
Confidence 999999999999999999999999999999999999998877777777888999999999999999875 7889999999
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHH
Q 024712 207 ADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGIC 245 (263)
Q Consensus 207 a~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~ 245 (263)
|.++...|+ +++|...+.+.....|. ...+...+.
T Consensus 448 a~~l~~~G~---~~eA~~~~~~~~~~~~~-~~~~~~~l~ 482 (553)
T PRK12370 448 VMFLSLKGK---HELARKLTKEISTQEIT-GLIAVNLLY 482 (553)
T ss_pred HHHHHhCCC---HHHHHHHHHHhhhccch-hHHHHHHHH
Confidence 999999999 99999999998887775 444444443
No 9
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.89 E-value=3.9e-20 Score=142.02 Aligned_cols=183 Identities=14% Similarity=0.133 Sum_probs=167.6
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 024712 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI 141 (263)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 141 (263)
.....+..++..+...|++++|+..++++++..|++..++..+|.++...|++++|+..+++++...|.+..++..+|.+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 45778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcH
Q 024712 142 AKAQGNFPTAIEWLNKYLETF--MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI 219 (263)
Q Consensus 142 ~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~ 219 (263)
+...|++++|+..+++++... |.....+..+|.++...|++++|...+.+++..+|.++..+..+|.++...|+ +
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~ 185 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ---Y 185 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCC---H
Confidence 999999999999999999853 55677899999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHhhccCCCcchhHHHhHHHHH
Q 024712 220 LLAKKYYASTIDLTGGKNTKALFGICLVM 248 (263)
Q Consensus 220 ~~A~~~~~~al~~~~~~~~~~~~~l~~~~ 248 (263)
++|...+++++...|. ....++.++.+.
T Consensus 186 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~ 213 (234)
T TIGR02521 186 KDARAYLERYQQTYNQ-TAESLWLGIRIA 213 (234)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 9999999999998765 555555444443
No 10
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.88 E-value=3.9e-21 Score=156.12 Aligned_cols=183 Identities=17% Similarity=0.121 Sum_probs=169.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh
Q 024712 70 VSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP 149 (263)
Q Consensus 70 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 149 (263)
.|..+++.|++.+|.-.|+.++..+|.+.++|..||.+....++-..|+..++++++++|++..++..||..|...|.-.
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHH
Confidence 68889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-----------------------------------------C--CCHHHHHHHHHHHHhcccHHHHH
Q 024712 150 TAIEWLNKYLETF-----------------------------------------M--ADHDAWRELAEIYVSLQMYKQAA 186 (263)
Q Consensus 150 ~A~~~~~~~l~~~-----------------------------------------p--~~~~~~~~la~~~~~~g~~~~A~ 186 (263)
+|+.++.+++... | .++++...||.+|...|+|++|+
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 9999998876643 3 35777889999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh--chhhHH
Q 024712 187 FCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV--CHSTTY 256 (263)
Q Consensus 187 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~--~~~~~~ 256 (263)
.||+.||...|++...|..||-++....+ ..+|+..|.+|+++.|+ ++|++|.|+++|.. |+-.+.
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~---s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~ 518 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNR---SEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAV 518 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcc---cHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHH
Confidence 99999999999999999999999999999 99999999999999997 99999999999766 554443
No 11
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.88 E-value=5.1e-20 Score=146.31 Aligned_cols=200 Identities=15% Similarity=0.027 Sum_probs=160.7
Q ss_pred hHHHHHHHHHhcCcccccccCc-chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHH
Q 024712 40 DKVLRHGLSILNDPKKRSALGP-DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAE 118 (263)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~ 118 (263)
+..+.....++.. .+++| .....+..+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+
T Consensus 43 e~~i~~~~~~l~~----~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 43 EVILARLNQILAS----RDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred HHHHHHHHHHHcc----ccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4444444455543 23344 457889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh---
Q 024712 119 KAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS--- 195 (263)
Q Consensus 119 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--- 195 (263)
..|+++++++|++..++.++|.++...|++++|+..++++++.+|+++.... ...+....+++++|+..+.+.+..
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~~~~~~~ 197 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLKQRYEKLDK 197 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHHHHHhhCCc
Confidence 9999999999999999999999999999999999999999999999874211 112233456677777777554322
Q ss_pred ----------------------------------CCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHH
Q 024712 196 ----------------------------------QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKAL 241 (263)
Q Consensus 196 ----------------------------------~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~ 241 (263)
.|..+.+|..+|.++...|+ +++|+.+|+++++.+|...+...
T Consensus 198 ~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~---~~~A~~~~~~Al~~~~~~~~e~~ 274 (296)
T PRK11189 198 EQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGD---LDEAAALFKLALANNVYNFVEHR 274 (296)
T ss_pred cccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCchHHHHH
Confidence 22334578889999999999 99999999999999975466666
Q ss_pred HhHHHH
Q 024712 242 FGICLV 247 (263)
Q Consensus 242 ~~l~~~ 247 (263)
+.+...
T Consensus 275 ~~~~e~ 280 (296)
T PRK11189 275 YALLEL 280 (296)
T ss_pred HHHHHH
Confidence 655444
No 12
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=1.3e-21 Score=161.24 Aligned_cols=184 Identities=15% Similarity=0.115 Sum_probs=167.9
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh----------------------------------CCCcHHHHHHHH
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ----------------------------------FPESKRVGRLEG 105 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----------------------------------~p~~~~~~~~~a 105 (263)
.++...+..++|..|+..++|++|..+|+.+-+. +|+.|..|..+|
T Consensus 349 ~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~G 428 (638)
T KOG1126|consen 349 HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALG 428 (638)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhc
Confidence 4455578889999999999999999999866654 445677888999
Q ss_pred HHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHH
Q 024712 106 ILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQA 185 (263)
Q Consensus 106 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 185 (263)
.+|..+++++.|+++|++++.++|....++..+|.-+.....++.|..+|++++..+|.+-.+|+.+|.+|.++++++.|
T Consensus 429 NcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~A 508 (638)
T KOG1126|consen 429 NCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFA 508 (638)
T ss_pred chhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHH
Q 024712 186 AFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLV 247 (263)
Q Consensus 186 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~ 247 (263)
.-.|++|++++|.+......+|.++...|+ .++|+..|++|+.++|. ++...|..+..
T Consensus 509 e~~fqkA~~INP~nsvi~~~~g~~~~~~k~---~d~AL~~~~~A~~ld~k-n~l~~~~~~~i 566 (638)
T KOG1126|consen 509 EFHFQKAVEINPSNSVILCHIGRIQHQLKR---KDKALQLYEKAIHLDPK-NPLCKYHRASI 566 (638)
T ss_pred HHHHHhhhcCCccchhHHhhhhHHHHHhhh---hhHHHHHHHHHHhcCCC-CchhHHHHHHH
Confidence 999999999999999999999999999999 99999999999999996 65555544443
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.88 E-value=3e-19 Score=160.06 Aligned_cols=167 Identities=14% Similarity=-0.017 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 024712 65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA 144 (263)
Q Consensus 65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 144 (263)
..+..+|.++...|++++|...++++++..|+.......++......|++++|+..+++++..+|+ ..++..+|.++..
T Consensus 543 ~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~ 621 (987)
T PRK09782 543 EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQ 621 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH
Confidence 345678889999999999999999999999988877777777777789999999999999999996 8899999999999
Q ss_pred cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHH
Q 024712 145 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 224 (263)
Q Consensus 145 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~ 224 (263)
.|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++.++|.++...|+ +++|+.
T Consensus 622 lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd---~~eA~~ 698 (987)
T PRK09782 622 RHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD---MAATQH 698 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHhhccCCC
Q 024712 225 YYASTIDLTGG 235 (263)
Q Consensus 225 ~~~~al~~~~~ 235 (263)
+|++++++.|+
T Consensus 699 ~l~~Al~l~P~ 709 (987)
T PRK09782 699 YARLVIDDIDN 709 (987)
T ss_pred HHHHHHhcCCC
Confidence 99999999997
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=1.8e-19 Score=157.40 Aligned_cols=173 Identities=14% Similarity=-0.007 Sum_probs=81.3
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHH---
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHK--- 136 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~--- 136 (263)
+|+...++..+|..+...|++++|+..+++++..+|+++.++..++.++...|++++|+..+++++...|+++.++.
T Consensus 106 ~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~ 185 (656)
T PRK15174 106 NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL 185 (656)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 44444445555555555555555555555555555555444444444444444444444444444433333322221
Q ss_pred -------------------------------HHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHH-
Q 024712 137 -------------------------------RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQ- 184 (263)
Q Consensus 137 -------------------------------~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~- 184 (263)
.++.++...|++++|+..++++++.+|+++.++..+|.++...|++++
T Consensus 186 ~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA 265 (656)
T PRK15174 186 SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREA 265 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhh
Confidence 112333334444444444444444444444444445555555554443
Q ss_pred ---HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 185 ---AAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 185 ---A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
|+..|++++..+|+++.++..+|.++...|+ +++|+..++++++++|+
T Consensus 266 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~---~~eA~~~l~~al~l~P~ 316 (656)
T PRK15174 266 KLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQ---NEKAIPLLQQSLATHPD 316 (656)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCC
Confidence 4445555555555544444555555555554 55555555555544443
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=2.2e-19 Score=156.84 Aligned_cols=204 Identities=9% Similarity=-0.024 Sum_probs=169.0
Q ss_pred cCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHH
Q 024712 36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWA 115 (263)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~ 115 (263)
.++...+..+...++.. .|+...++..++...+..|++++|+..+++++..+|+++.++..+|.++...|+++
T Consensus 55 ~g~~~~A~~l~~~~l~~-------~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~ 127 (656)
T PRK15174 55 KDETDVGLTLLSDRVLT-------AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYA 127 (656)
T ss_pred cCCcchhHHHhHHHHHh-------CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Confidence 34455555666665555 78889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHH-----------------------
Q 024712 116 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWREL----------------------- 172 (263)
Q Consensus 116 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l----------------------- 172 (263)
+|+..+++++..+|+++.++..++.++...|++++|+..+++++...|+++.++..+
T Consensus 128 ~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~ 207 (656)
T PRK15174 128 TVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFF 207 (656)
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999988888876655332
Q ss_pred -----------HHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHH----HHHHHHHhhccCCCcc
Q 024712 173 -----------AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL----AKKYYASTIDLTGGKN 237 (263)
Q Consensus 173 -----------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~----A~~~~~~al~~~~~~~ 237 (263)
+.++...|++++|+..+.+++..+|+++.++..+|.++...|+ +++ |+..|+++++++|+ +
T Consensus 208 ~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~---~~eA~~~A~~~~~~Al~l~P~-~ 283 (656)
T PRK15174 208 ALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGR---SREAKLQAAEHWRHALQFNSD-N 283 (656)
T ss_pred CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC---chhhHHHHHHHHHHHHhhCCC-C
Confidence 4455566777777777777777788888888888888888888 764 78888888888886 6
Q ss_pred hhHHHhHHHHHhh
Q 024712 238 TKALFGICLVMFV 250 (263)
Q Consensus 238 ~~~~~~l~~~~~~ 250 (263)
..++..++.....
T Consensus 284 ~~a~~~lg~~l~~ 296 (656)
T PRK15174 284 VRIVTLYADALIR 296 (656)
T ss_pred HHHHHHHHHHHHH
Confidence 6666555554443
No 16
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=3.1e-20 Score=147.26 Aligned_cols=160 Identities=20% Similarity=0.109 Sum_probs=155.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 024712 69 QVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNF 148 (263)
Q Consensus 69 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 148 (263)
-+|..|.-.++.++|+.+|+++++++|....+|..+|.-|..+.+...|++.|+++++.+|.+..+|+.+|+.|..++..
T Consensus 335 iIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh 414 (559)
T KOG1155|consen 335 IIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMH 414 (559)
T ss_pred eehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcch
Confidence 36777777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 024712 149 PTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAS 228 (263)
Q Consensus 149 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~ 228 (263)
.=|+-+|++++...|+|+..|..||.||.+.++.++|+++|.+++.....+..++..+|.+|..+++ .++|..+|++
T Consensus 415 ~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d---~~eAa~~yek 491 (559)
T KOG1155|consen 415 FYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD---LNEAAQYYEK 491 (559)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh---HHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred hhc
Q 024712 229 TID 231 (263)
Q Consensus 229 al~ 231 (263)
.++
T Consensus 492 ~v~ 494 (559)
T KOG1155|consen 492 YVE 494 (559)
T ss_pred HHH
Confidence 998
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.86 E-value=2.7e-19 Score=165.68 Aligned_cols=199 Identities=15% Similarity=0.054 Sum_probs=168.4
Q ss_pred ChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH--------------HHHH
Q 024712 38 RPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKR--------------VGRL 103 (263)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~--------------~~~~ 103 (263)
+.++++......+.. .|+...++..+|.++...|++++|+..|+++++.+|++.. ....
T Consensus 284 ~~~~A~~~l~~aL~~-------~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 284 QGGKAIPELQQAVRA-------NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred CHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 344444444444433 7888899999999999999999999999999999987542 1234
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHH--------
Q 024712 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI-------- 175 (263)
Q Consensus 104 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~-------- 175 (263)
.|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++.+|.+..++..++.+
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~ 436 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEK 436 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHH
Confidence 578888999999999999999999999999999999999999999999999999999999998776655544
Q ss_pred ----------------------------------HHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHH
Q 024712 176 ----------------------------------YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL 221 (263)
Q Consensus 176 ----------------------------------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~ 221 (263)
+...|++++|+.+|+++++.+|+++.++..+|.++...|+ +++
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~---~~~ 513 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ---RSQ 513 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHH
Confidence 4467999999999999999999999999999999999999 999
Q ss_pred HHHHHHHhhccCCCcchhHHHhHHHH
Q 024712 222 AKKYYASTIDLTGGKNTKALFGICLV 247 (263)
Q Consensus 222 A~~~~~~al~~~~~~~~~~~~~l~~~ 247 (263)
|+..|+++++.+|+ +...++.+.+.
T Consensus 514 A~~~l~~al~~~P~-~~~~~~a~al~ 538 (1157)
T PRK11447 514 ADALMRRLAQQKPN-DPEQVYAYGLY 538 (1157)
T ss_pred HHHHHHHHHHcCCC-CHHHHHHHHHH
Confidence 99999999999996 66666655443
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=6.4e-19 Score=146.07 Aligned_cols=168 Identities=14% Similarity=0.039 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH-----HHHHHHH
Q 024712 65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP-----VLHKRRV 139 (263)
Q Consensus 65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~l~ 139 (263)
.++..+|..+...|++++|+..|+++++..|.+..++..++.++...|++++|++.+++++...|.+. ..+..+|
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA 187 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 34555666666666666666666666665565556666666666666666666666666666555432 1334556
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHhcCCCCc
Q 024712 140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV-PLYHLAYADVLYTLGGVDN 218 (263)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~ 218 (263)
.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..+++++..+|.+ ..++..++.++...|+
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~--- 264 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD--- 264 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC---
Confidence 666666666666666666666666666666666666666666666666666666665554 2345556666666666
Q ss_pred HHHHHHHHHHhhccCCC
Q 024712 219 ILLAKKYYASTIDLTGG 235 (263)
Q Consensus 219 ~~~A~~~~~~al~~~~~ 235 (263)
+++|...++++++..|+
T Consensus 265 ~~~A~~~l~~~~~~~p~ 281 (389)
T PRK11788 265 EAEGLEFLRRALEEYPG 281 (389)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 66666666666666554
No 19
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.4e-19 Score=143.56 Aligned_cols=185 Identities=17% Similarity=0.134 Sum_probs=162.4
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---cHHHH----H---------------------------HHHHH
Q 024712 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE---SKRVG----R---------------------------LEGIL 107 (263)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~----~---------------------------~~a~~ 107 (263)
....+-.+.|.+.....|+++|+..|+.+...+|- +.+.+ + ..|+.
T Consensus 260 ~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNY 339 (559)
T KOG1155|consen 260 NSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANY 339 (559)
T ss_pred ccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhH
Confidence 44555566788889999999999999999999982 21111 1 12445
Q ss_pred HHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHH
Q 024712 108 LEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAF 187 (263)
Q Consensus 108 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 187 (263)
|...++.++|+.+|++++.++|....+|..+|.-|..+++...|+..|++|++++|.|-.+|+.||+.|..++..-=|+-
T Consensus 340 YSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLy 419 (559)
T KOG1155|consen 340 YSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALY 419 (559)
T ss_pred HHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHH
Confidence 56668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 188 CYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 188 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
+|++++...|+++..|..||+||.++++ .++|++.|.+++..+. .+..+++.|+..+..
T Consensus 420 YfqkA~~~kPnDsRlw~aLG~CY~kl~~---~~eAiKCykrai~~~d-te~~~l~~LakLye~ 478 (559)
T KOG1155|consen 420 YFQKALELKPNDSRLWVALGECYEKLNR---LEEAIKCYKRAILLGD-TEGSALVRLAKLYEE 478 (559)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHhcc---HHHHHHHHHHHHhccc-cchHHHHHHHHHHHH
Confidence 9999999999999999999999999999 9999999999999976 367777777766544
No 20
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.85 E-value=1.1e-18 Score=133.96 Aligned_cols=189 Identities=20% Similarity=0.189 Sum_probs=169.8
Q ss_pred ccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcH
Q 024712 35 KVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLW 114 (263)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~ 114 (263)
...+.+.+.......+.. .|....++..++..+...|++++|+..++++++..|.++.++..+|.++...|++
T Consensus 43 ~~~~~~~A~~~~~~~l~~-------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~ 115 (234)
T TIGR02521 43 EQGDLEVAKENLDKALEH-------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKY 115 (234)
T ss_pred HCCCHHHHHHHHHHHHHh-------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccH
Confidence 345666777766666544 5777888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 024712 115 AEAEKAYSSLLEDN--PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEEL 192 (263)
Q Consensus 115 ~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 192 (263)
++|+..+++++... |.....+..+|.++...|++++|...+.+++..+|.++.++..+|.++...|++++|+..++++
T Consensus 116 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 195 (234)
T TIGR02521 116 EQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERY 195 (234)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999853 4556788899999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccC
Q 024712 193 ILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT 233 (263)
Q Consensus 193 l~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~ 233 (263)
+...|.++..+..++.++...|+ .++|..+.+......
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 196 QQTYNQTAESLWLGIRIARALGD---VAAAQRYGAQLQKLF 233 (234)
T ss_pred HHhCCCCHHHHHHHHHHHHHHhh---HHHHHHHHHHHHhhC
Confidence 99999889999999999999999 999999888766553
No 21
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.85 E-value=1.1e-18 Score=158.48 Aligned_cols=185 Identities=18% Similarity=0.152 Sum_probs=167.3
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV 139 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 139 (263)
.|....++..+|.++...|++++|+..+++++...|++ .....++.++...|++++|+..+++++..+|++..++..+|
T Consensus 699 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la 777 (899)
T TIGR02917 699 HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALA 777 (899)
T ss_pred CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 55667778888999999999999999999999998877 66778899999999999999999999999999999999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcH
Q 024712 140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI 219 (263)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~ 219 (263)
.++...|++++|+..|+++++.+|+++.++..+|.++...|+ .+|+..+++++...|+++..+..+|.++...|+ +
T Consensus 778 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~ 853 (899)
T TIGR02917 778 ELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGE---A 853 (899)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC---H
Confidence 999999999999999999999999999999999999999999 889999999999999999999999999999999 9
Q ss_pred HHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 220 LLAKKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 220 ~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
++|..+|+++++.+|. +...++.++.+...
T Consensus 854 ~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~ 883 (899)
T TIGR02917 854 DRALPLLRKAVNIAPE-AAAIRYHLALALLA 883 (899)
T ss_pred HHHHHHHHHHHhhCCC-ChHHHHHHHHHHHH
Confidence 9999999999999996 66666666655544
No 22
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.85 E-value=1.5e-18 Score=155.68 Aligned_cols=172 Identities=11% Similarity=-0.032 Sum_probs=163.2
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV 139 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 139 (263)
.|+....+..++......|++++|+..++++++..|+ +.++..+|.++...|++++|+..|++++..+|+++.++..+|
T Consensus 572 ~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG 650 (987)
T PRK09782 572 GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALG 650 (987)
T ss_pred CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 5666666666666666779999999999999999996 889999999999999999999999999999999999999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcH
Q 024712 140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI 219 (263)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~ 219 (263)
.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|++++.+.|++..+....|.+.....+ +
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~---~ 727 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFN---F 727 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHH---H
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHHHHhhccCCC
Q 024712 220 LLAKKYYASTIDLTGG 235 (263)
Q Consensus 220 ~~A~~~~~~al~~~~~ 235 (263)
+.|.+.+.+....+|.
T Consensus 728 ~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 728 RRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHHHHHHHHhhcCcc
Confidence 9999999999999986
No 23
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.85 E-value=4.9e-18 Score=154.23 Aligned_cols=185 Identities=18% Similarity=0.151 Sum_probs=146.7
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV 139 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 139 (263)
.|..+.++..++..+...|++++|+..+++++...|.+..++..++.++...|++++|+..+++++..+|.+...+..++
T Consensus 495 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 574 (899)
T TIGR02917 495 EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALA 574 (899)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHH
Confidence 56667777777888888888888888888888888877777778888888888888888888888887887777777888
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcH
Q 024712 140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI 219 (263)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~ 219 (263)
.++...|++++|+..+++++...|.++.+|..+|.++...|++++|+.+|+++++.+|.++.++..+|.++...|+ +
T Consensus 575 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~ 651 (899)
T TIGR02917 575 QYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKN---Y 651 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC---H
Confidence 8888888888888888888888888888888888888888888888888888888888888888888888888888 8
Q ss_pred HHHHHHHHHhhccCCCcchhHHHhHHHHH
Q 024712 220 LLAKKYYASTIDLTGGKNTKALFGICLVM 248 (263)
Q Consensus 220 ~~A~~~~~~al~~~~~~~~~~~~~l~~~~ 248 (263)
++|...|+++++.+|+ +...+..++.+.
T Consensus 652 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 679 (899)
T TIGR02917 652 AKAITSLKRALELKPD-NTEAQIGLAQLL 679 (899)
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 8888888888888775 555555444443
No 24
>PRK12370 invasion protein regulator; Provisional
Probab=99.84 E-value=3.2e-19 Score=153.39 Aligned_cols=168 Identities=11% Similarity=-0.094 Sum_probs=149.6
Q ss_pred CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---------CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 024712 78 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK---------GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNF 148 (263)
Q Consensus 78 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 148 (263)
+++++|+..|+++++.+|+++.++..+|.++... +++++|+..++++++.+|+++.++..+|.++...|++
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 4678999999999999999999999999887643 3489999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 024712 149 PTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAS 228 (263)
Q Consensus 149 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~ 228 (263)
++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++.....++.+++..|+ +++|+..+++
T Consensus 355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~---~eeA~~~~~~ 431 (553)
T PRK12370 355 IVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTG---IDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccC---HHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998877777878888999 9999999999
Q ss_pred hhccCCCcchhHHHhHHHHH
Q 024712 229 TIDLTGGKNTKALFGICLVM 248 (263)
Q Consensus 229 al~~~~~~~~~~~~~l~~~~ 248 (263)
++..+|+..+.++..++.+.
T Consensus 432 ~l~~~~p~~~~~~~~la~~l 451 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFL 451 (553)
T ss_pred HHHhccccCHHHHHHHHHHH
Confidence 99876332454444444443
No 25
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.84 E-value=1.7e-18 Score=133.73 Aligned_cols=174 Identities=17% Similarity=0.053 Sum_probs=154.9
Q ss_pred ccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHH-
Q 024712 58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK---RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV- 133 (263)
Q Consensus 58 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~- 133 (263)
+.++..+..+..+|..++..|++++|+..+++++..+|+++ .+++.+|.++...|++++|+..++++++..|+++.
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 34556888999999999999999999999999999999876 57799999999999999999999999999998875
Q ss_pred --HHHHHHHHHHHc--------CChhHHHHHHHHHHHhcCCCHHHH-----------------HHHHHHHHhcccHHHHH
Q 024712 134 --LHKRRVAIAKAQ--------GNFPTAIEWLNKYLETFMADHDAW-----------------RELAEIYVSLQMYKQAA 186 (263)
Q Consensus 134 --~~~~l~~~~~~~--------g~~~~A~~~~~~~l~~~p~~~~~~-----------------~~la~~~~~~g~~~~A~ 186 (263)
+++.+|.++... |++++|+..+++++..+|++...+ ..+|.+++..|++.+|+
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~ 186 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAI 186 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 688899999876 789999999999999999986543 35788899999999999
Q ss_pred HHHHHHHhhCCCC---HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCC
Q 024712 187 FCYEELILSQPTV---PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 234 (263)
Q Consensus 187 ~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~ 234 (263)
..+++++...|+. +.++..+|.++..+|+ +++|..+++......|
T Consensus 187 ~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~---~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 187 NRFETVVENYPDTPATEEALARLVEAYLKLGL---KDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCC
Confidence 9999999997765 5789999999999999 9999998887665544
No 26
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=1.6e-17 Score=137.66 Aligned_cols=188 Identities=14% Similarity=0.081 Sum_probs=95.9
Q ss_pred CChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcC
Q 024712 37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES----KRVGRLEGILLEAKG 112 (263)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~~a~~~~~~~ 112 (263)
++.+.++......+.. +|+.+.++..++..+...|++++|+.+++.++...+.. ..++..+|.++...|
T Consensus 49 ~~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 49 EQPDKAIDLFIEMLKV-------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred CChHHHHHHHHHHHhc-------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 3344444444444433 34444555555555555555555555555555432211 133445555555555
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHhcccHHHHHH
Q 024712 113 LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH-----DAWRELAEIYVSLQMYKQAAF 187 (263)
Q Consensus 113 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~ 187 (263)
++++|+..|+++++.+|.+..++..++.++...|++++|+..+++++...|.+. ..+..+|.++...|++++|+.
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 555555555555555555555555555555555555555555555555444432 123345555555555555555
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCC
Q 024712 188 CYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 234 (263)
Q Consensus 188 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~ 234 (263)
+|+++++.+|++..++..+|.++...|+ +++|+..|+++++.+|
T Consensus 202 ~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~p 245 (389)
T PRK11788 202 LLKKALAADPQCVRASILLGDLALAQGD---YAAAIEALERVEEQDP 245 (389)
T ss_pred HHHHHHhHCcCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHCh
Confidence 5555555555555555555555555555 5555555555555544
No 27
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.83 E-value=5.8e-18 Score=156.95 Aligned_cols=186 Identities=16% Similarity=0.099 Sum_probs=137.9
Q ss_pred ccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHH-------------------------------
Q 024712 58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGI------------------------------- 106 (263)
Q Consensus 58 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~------------------------------- 106 (263)
..+|+...++..+|.++...|++++|+..|+++++.+|++..++..++.
T Consensus 379 ~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~ 458 (1157)
T PRK11447 379 QVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERS 458 (1157)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3477778888889999999999999999999999999987766554443
Q ss_pred -----------HHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHH----
Q 024712 107 -----------LLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE---- 171 (263)
Q Consensus 107 -----------~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~---- 171 (263)
.+...|++++|+..|++++..+|+++.++..++.++...|++++|+..++++++.+|.++..++.
T Consensus 459 l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~ 538 (1157)
T PRK11447 459 LQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLY 538 (1157)
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34457899999999999999999999999999999999999999999999998888877655443
Q ss_pred ----------------------------------------------------------------------HHHHHHhccc
Q 024712 172 ----------------------------------------------------------------------LAEIYVSLQM 181 (263)
Q Consensus 172 ----------------------------------------------------------------------la~~~~~~g~ 181 (263)
+|.++...|+
T Consensus 539 l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~ 618 (1157)
T PRK11447 539 LSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGD 618 (1157)
T ss_pred HHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 4445555566
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHH
Q 024712 182 YKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLV 247 (263)
Q Consensus 182 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~ 247 (263)
+++|+.+|++++..+|+++.++..++.++...|+ +++|+..|+++++..|+ +...+..++.+
T Consensus 619 ~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~---~~eA~~~l~~ll~~~p~-~~~~~~~la~~ 680 (1157)
T PRK11447 619 YAAARAAYQRVLTREPGNADARLGLIEVDIAQGD---LAAARAQLAKLPATAND-SLNTQRRVALA 680 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHhccCCC-ChHHHHHHHHH
Confidence 6666666666666666666666666666666666 66666666666666554 44444434333
No 28
>PLN02789 farnesyltranstransferase
Probab=99.83 E-value=1.2e-17 Score=132.75 Aligned_cols=211 Identities=13% Similarity=0.104 Sum_probs=179.6
Q ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCcHHHH
Q 024712 23 GAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQ-CLDVAKDCIKVLQKQFPESKRVG 101 (263)
Q Consensus 23 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~ 101 (263)
.++.+++.+..... ..+.++.....++.. +|+...+|...+.++...| ++++++..+++++..+|++..+|
T Consensus 38 ~a~~~~ra~l~~~e-~serAL~lt~~aI~l-------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW 109 (320)
T PLN02789 38 EAMDYFRAVYASDE-RSPRALDLTADVIRL-------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIW 109 (320)
T ss_pred HHHHHHHHHHHcCC-CCHHHHHHHHHHHHH-------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHh
Confidence 57888888876554 456666666666555 8999999999999998888 68999999999999999999999
Q ss_pred HHHHHHHHHcCcH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 024712 102 RLEGILLEAKGLW--AEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL 179 (263)
Q Consensus 102 ~~~a~~~~~~~~~--~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 179 (263)
..++.++...|+. ++++.++.++++.+|.+..+|...+.++...|++++++..+.++++.+|.+..+|...+.+....
T Consensus 110 ~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 110 HHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 9999999888874 78899999999999999999999999999999999999999999999999999999999988765
Q ss_pred ---ccH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHh----cCCCCcHHHHHHHHHHhhccCCCcchhHHHhHH
Q 024712 180 ---QMY----KQAAFCYEELILSQPTVPLYHLAYADVLYT----LGGVDNILLAKKYYASTIDLTGGKNTKALFGIC 245 (263)
Q Consensus 180 ---g~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~ 245 (263)
|.+ ++++.+..+++..+|++..+|..++.++.. +++ ..+|...+.+++..+|. ...++--|+
T Consensus 190 ~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~---~~~~~~~~~~~~~~~~~-s~~al~~l~ 262 (320)
T PLN02789 190 PLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVS---DPEVSSVCLEVLSKDSN-HVFALSDLL 262 (320)
T ss_pred cccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccccc---chhHHHHHHHhhcccCC-cHHHHHHHH
Confidence 333 578888999999999999999999999988 344 67799999999888775 444443333
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.82 E-value=2.3e-19 Score=142.06 Aligned_cols=165 Identities=25% Similarity=0.276 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024712 65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQF--PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA 142 (263)
Q Consensus 65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 142 (263)
..+...+..+...++++++...++.+.... |.++.++..+|.++...|++++|+..++++++.+|+++.+...++.++
T Consensus 111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~l 190 (280)
T PF13429_consen 111 RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLL 190 (280)
T ss_dssp -------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 334455666778888888888888877654 567888888889999999999999999999999999888888888888
Q ss_pred HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHH
Q 024712 143 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLA 222 (263)
Q Consensus 143 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A 222 (263)
...|+.+++...+.......|.++..|..+|.++...|++++|+.+|+++++.+|+++.+...+|.++...|+ .++|
T Consensus 191 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~---~~~A 267 (280)
T PF13429_consen 191 IDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGR---KDEA 267 (280)
T ss_dssp CTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------
T ss_pred HHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccc---cccc
Confidence 8888888888888888888888888888889999999999999999999998899999888899999999998 8888
Q ss_pred HHHHHHhhcc
Q 024712 223 KKYYASTIDL 232 (263)
Q Consensus 223 ~~~~~~al~~ 232 (263)
...+++++..
T Consensus 268 ~~~~~~~~~~ 277 (280)
T PF13429_consen 268 LRLRRQALRL 277 (280)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 8888887653
No 30
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=5e-18 Score=137.83 Aligned_cols=204 Identities=17% Similarity=0.163 Sum_probs=152.1
Q ss_pred CChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHH
Q 024712 37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAE 116 (263)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~ 116 (263)
++......++..+.+. .|..+-.|..+|..|+..|++.+|+++|.++...+|....+|...|..+...|+.++
T Consensus 292 ~~~n~Lf~lsh~LV~~-------yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQ 364 (611)
T KOG1173|consen 292 GKSNKLFLLSHKLVDL-------YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQ 364 (611)
T ss_pred cccchHHHHHHHHHHh-------CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHH
Confidence 3344555555555544 777777788888888888888888888888888888877777777776655555555
Q ss_pred HHHHHHHH----------------------------------HhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc
Q 024712 117 AEKAYSSL----------------------------------LEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF 162 (263)
Q Consensus 117 A~~~~~~~----------------------------------~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 162 (263)
|+..|..+ +.+.|.++.++..+|.+.+..+.+.+|..+|+.++..-
T Consensus 365 AmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~i 444 (611)
T KOG1173|consen 365 AMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVI 444 (611)
T ss_pred HHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHh
Confidence 55555544 55566666666666666666666777777776666321
Q ss_pred ----CC---CHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 163 ----MA---DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 163 ----p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
+. -...+.+||.++.+++.+++|+.+|++++.+.|.++.++..+|.+|..+|+ ++.|+.+|.+++-++|+
T Consensus 445 k~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn---ld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 445 KSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGN---LDKAIDHFHKALALKPD 521 (611)
T ss_pred hhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC---hHHHHHHHHHHHhcCCc
Confidence 11 123477899999999999999999999999999999999999999999999 99999999999999997
Q ss_pred -cchhHHHhHHHHHhh
Q 024712 236 -KNTKALFGICLVMFV 250 (263)
Q Consensus 236 -~~~~~~~~l~~~~~~ 250 (263)
..+....+.++--..
T Consensus 522 n~~~~~lL~~aie~~~ 537 (611)
T KOG1173|consen 522 NIFISELLKLAIEDSE 537 (611)
T ss_pred cHHHHHHHHHHHHhhh
Confidence 245556666655433
No 31
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.3e-18 Score=138.95 Aligned_cols=176 Identities=16% Similarity=0.117 Sum_probs=136.7
Q ss_pred cccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHH
Q 024712 57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHK 136 (263)
Q Consensus 57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 136 (263)
+.+.|.....|..++..|.+..+..+....|+.+...+|.++.+++.+|.+++-.+++++|+..|+++++++|++..++.
T Consensus 353 I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~i 432 (606)
T KOG0547|consen 353 IKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYI 432 (606)
T ss_pred HhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHH
Confidence 44466666667778888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC------CHHHHHHHHHHH
Q 024712 137 RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT------VPLYHLAYADVL 210 (263)
Q Consensus 137 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~ 210 (263)
.++...++++++.++...|+.+...+|+.++++...|.++..+++|++|++.|.+++.+.|. ++..+.+-|.+.
T Consensus 433 Ql~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~ 512 (606)
T KOG0547|consen 433 QLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLV 512 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhh
Confidence 88888888888888888888888888888888888888888888888888888888888877 444444444433
Q ss_pred Hh-cCCCCcHHHHHHHHHHhhccCCC
Q 024712 211 YT-LGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 211 ~~-~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
.+ .++ +..|++.++++++++|.
T Consensus 513 ~qwk~d---~~~a~~Ll~KA~e~Dpk 535 (606)
T KOG0547|consen 513 LQWKED---INQAENLLRKAIELDPK 535 (606)
T ss_pred hchhhh---HHHHHHHHHHHHccCch
Confidence 33 245 77777777777777775
No 32
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.9e-18 Score=138.06 Aligned_cols=211 Identities=17% Similarity=0.057 Sum_probs=187.2
Q ss_pred ccHHHHHHHHHHhccCChhHHHHHHHHHhcCcc---------cccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 024712 22 GGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPK---------KRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQK 92 (263)
Q Consensus 22 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 92 (263)
.++..-+.......+......+..+...+.... ....++|+++++|...|.+.+-.+++++|+.-|++++.
T Consensus 343 ~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~ 422 (606)
T KOG0547|consen 343 LGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS 422 (606)
T ss_pred hhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466777777777787777767776666654432 23556999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC------CH
Q 024712 93 QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA------DH 166 (263)
Q Consensus 93 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~------~~ 166 (263)
++|.+...+..++...++.++++++...|+.+...-|+.+.++...|.++..++++++|++.|.+++++.|. ++
T Consensus 423 L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~ 502 (606)
T KOG0547|consen 423 LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNA 502 (606)
T ss_pred cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 66
Q ss_pred HHHHHHHHHHHh-cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 167 DAWRELAEIYVS-LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 167 ~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
..+...|.+..+ .+++..|+.++.++++++|....++..||.+..+.|+ .++|+++|+++..+...
T Consensus 503 ~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~---i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 503 APLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGK---IDEAIELFEKSAQLART 569 (606)
T ss_pred hhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHh
Confidence 666666655544 5899999999999999999999999999999999999 99999999999887543
No 33
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=1.6e-18 Score=141.07 Aligned_cols=173 Identities=15% Similarity=0.168 Sum_probs=160.9
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc------------
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED------------ 127 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------------ 127 (263)
+|....+|..||.+....++-..|+..++++++++|++..++..||..|...|.-.+|+.++.+-+..
T Consensus 315 dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~ 394 (579)
T KOG1125|consen 315 DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGE 394 (579)
T ss_pred ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCc
Confidence 89999999999999999999999999999999999999999999999999888888888887777542
Q ss_pred -----------------------------CC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024712 128 -----------------------------NP--LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY 176 (263)
Q Consensus 128 -----------------------------~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 176 (263)
.| .++++...||.+|...|+|++|+.+|+.+|...|++...|..||..+
T Consensus 395 ~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtL 474 (579)
T KOG1125|consen 395 NEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATL 474 (579)
T ss_pred cccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHh
Confidence 33 34677888999999999999999999999999999999999999999
Q ss_pred HhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 177 VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 177 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
....+..+|+..|.+|+++.|.+..++++||.+++.+|. |++|.++|-.+|.+.+.
T Consensus 475 AN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~---ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 475 ANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA---YKEAVKHLLEALSMQRK 530 (579)
T ss_pred cCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh---HHHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999 99999999999988653
No 34
>PLN02789 farnesyltranstransferase
Probab=99.81 E-value=1.6e-17 Score=132.10 Aligned_cols=188 Identities=16% Similarity=0.069 Sum_probs=162.8
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-cHHHHHHHHHHHHhcCCCCHHHHHHH
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG-LWAEAEKAYSSLLEDNPLDPVLHKRR 138 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l 138 (263)
.|+...++..+-.++...+..++|+..+.++++.+|++..+|..++.++...| ++++++..+.+++..+|++..+|...
T Consensus 33 ~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R 112 (320)
T PLN02789 33 TPEFREAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHR 112 (320)
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHH
Confidence 44555555555556677889999999999999999999999999999999998 68999999999999999999999999
Q ss_pred HHHHHHcCCh--hHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc---
Q 024712 139 VAIAKAQGNF--PTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL--- 213 (263)
Q Consensus 139 ~~~~~~~g~~--~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--- 213 (263)
+.++...|+. ++++.+++++++.+|.+..+|...+.++...|++++++.++.++++.+|.+..+|...+.++...
T Consensus 113 ~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l 192 (320)
T PLN02789 113 RWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLL 192 (320)
T ss_pred HHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccc
Confidence 9999988874 67899999999999999999999999999999999999999999999999999999999998876
Q ss_pred CCC-CcHHHHHHHHHHhhccCCCcchhHHHhHHHHH
Q 024712 214 GGV-DNILLAKKYYASTIDLTGGKNTKALFGICLVM 248 (263)
Q Consensus 214 g~~-~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~ 248 (263)
|.. ...++++.+..+++.++|+ +..+|..+.-+.
T Consensus 193 ~~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll 227 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAILANPR-NESPWRYLRGLF 227 (320)
T ss_pred ccccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHH
Confidence 331 1135788888999999997 666665444443
No 35
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.81 E-value=1.8e-18 Score=122.51 Aligned_cols=127 Identities=14% Similarity=0.046 Sum_probs=103.2
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC
Q 024712 84 KDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 163 (263)
Q Consensus 84 ~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 163 (263)
...++++++.+|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|++++..+|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 35677788777764 445788888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 024712 164 ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL 213 (263)
Q Consensus 164 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 213 (263)
+++.+++.+|.++...|++++|+..|.+++...|+++..+..++.+....
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888887777665543
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.78 E-value=4.5e-18 Score=134.68 Aligned_cols=184 Identities=20% Similarity=0.094 Sum_probs=119.3
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--CCCHHHHHH
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN--PLDPVLHKR 137 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~ 137 (263)
++..+..+..++.. ...+++++|..++.++.+.++ ++..+.....++...++++++...++++.... +.++..+..
T Consensus 74 ~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 151 (280)
T PF13429_consen 74 DKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLA 151 (280)
T ss_dssp ----------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHH
T ss_pred cccccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHH
Confidence 45556666666666 688999999999999887664 56667777888999999999999999987654 677889999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCC
Q 024712 138 RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVD 217 (263)
Q Consensus 138 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 217 (263)
+|.++...|++++|+..++++++.+|+++.++..++.++...|+++++...+.......|.++..+..+|.++..+|+
T Consensus 152 ~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~-- 229 (280)
T PF13429_consen 152 LAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR-- 229 (280)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT---
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc--
Confidence 999999999999999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred cHHHHHHHHHHhhccCCCcchhHHHhHHHHHh
Q 024712 218 NILLAKKYYASTIDLTGGKNTKALFGICLVMF 249 (263)
Q Consensus 218 ~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~ 249 (263)
+++|+.+|++++..+|+ ++..+..++-+..
T Consensus 230 -~~~Al~~~~~~~~~~p~-d~~~~~~~a~~l~ 259 (280)
T PF13429_consen 230 -YEEALEYLEKALKLNPD-DPLWLLAYADALE 259 (280)
T ss_dssp -HHHHHHHHHHHHHHSTT--HHHHHHHHHHHT
T ss_pred -ccccccccccccccccc-ccccccccccccc
Confidence 99999999999999996 6666665555533
No 37
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.78 E-value=1.7e-17 Score=117.63 Aligned_cols=118 Identities=16% Similarity=0.132 Sum_probs=110.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC
Q 024712 118 EKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 197 (263)
Q Consensus 118 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 197 (263)
...++++++.+|++ +..+|.++...|++++|+..|++++..+|.+..+|..+|.++...|++++|+..|.+++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46889999999885 557899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHH
Q 024712 198 TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALF 242 (263)
Q Consensus 198 ~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~ 242 (263)
+++.++.++|.++...|+ +++|+..|.+++.++|+ +...+.
T Consensus 90 ~~~~a~~~lg~~l~~~g~---~~eAi~~~~~Al~~~p~-~~~~~~ 130 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGE---PGLAREAFQTAIKMSYA-DASWSE 130 (144)
T ss_pred CCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-ChHHHH
Confidence 999999999999999999 99999999999999997 554443
No 38
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.77 E-value=7.4e-17 Score=120.25 Aligned_cols=151 Identities=9% Similarity=0.012 Sum_probs=128.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhH
Q 024712 71 SIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPT 150 (263)
Q Consensus 71 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 150 (263)
+..|+..|+++......+... .|.. -+...++.++++..+++++..+|++...|..+|.++...|++++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHH
Confidence 445777888877543332211 1211 11126777899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHH-Hhccc--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 024712 151 AIEWLNKYLETFMADHDAWRELAEIY-VSLQM--YKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYA 227 (263)
Q Consensus 151 A~~~~~~~l~~~p~~~~~~~~la~~~-~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~ 227 (263)
|+..|+++++++|+++.++..+|.++ ...|+ +++|...++++++.+|+++.++..+|.+++..|+ +++|+.+|+
T Consensus 92 A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~---~~~Ai~~~~ 168 (198)
T PRK10370 92 ALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQAD---YAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC---HHHHHHHHH
Confidence 99999999999999999999999975 67777 5999999999999999999999999999999999 999999999
Q ss_pred HhhccCCC
Q 024712 228 STIDLTGG 235 (263)
Q Consensus 228 ~al~~~~~ 235 (263)
++++++|.
T Consensus 169 ~aL~l~~~ 176 (198)
T PRK10370 169 KVLDLNSP 176 (198)
T ss_pred HHHhhCCC
Confidence 99999887
No 39
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.77 E-value=1.5e-16 Score=126.46 Aligned_cols=154 Identities=17% Similarity=0.042 Sum_probs=134.2
Q ss_pred cCChHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHH
Q 024712 77 CQCLDVAKDCIKVLQKQFP----ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAI 152 (263)
Q Consensus 77 ~~~~~~A~~~~~~~~~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 152 (263)
.+..+.++..+.+++...| ..+..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3566778888888887544 346779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712 153 EWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (263)
Q Consensus 153 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~ 232 (263)
..|+++++++|++..+|..+|.++...|++++|+..++++++.+|+++..... ..+....++ +++|+..|.+++..
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~-~~l~~~~~~---~~~A~~~l~~~~~~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW-LYLAESKLD---PKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHccCC---HHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999742221 223445677 99999999877655
Q ss_pred CC
Q 024712 233 TG 234 (263)
Q Consensus 233 ~~ 234 (263)
.+
T Consensus 195 ~~ 196 (296)
T PRK11189 195 LD 196 (296)
T ss_pred CC
Confidence 33
No 40
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.76 E-value=5.9e-16 Score=134.32 Aligned_cols=159 Identities=16% Similarity=0.128 Sum_probs=146.8
Q ss_pred ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 024712 79 CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKY 158 (263)
Q Consensus 79 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 158 (263)
...+++.-+......+|+++.+++++|.+....|.+++|...++.+++..|++..++..++.++.+.+++++|+..++++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~ 146 (694)
T PRK15179 67 KPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELY 146 (694)
T ss_pred chHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 44455555666677889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcch
Q 024712 159 LETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNT 238 (263)
Q Consensus 159 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~ 238 (263)
+..+|+++.+.+.+|.++...|++++|+.+|++++..+|+++.++..+|.++...|+ .++|...|+++++...+ -.
T Consensus 147 l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~---~~~A~~~~~~a~~~~~~-~~ 222 (694)
T PRK15179 147 FSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA---LWRARDVLQAGLDAIGD-GA 222 (694)
T ss_pred hhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhCc-ch
Confidence 999999999999999999999999999999999999999999999999999999999 99999999999998664 34
Q ss_pred hHH
Q 024712 239 KAL 241 (263)
Q Consensus 239 ~~~ 241 (263)
+.+
T Consensus 223 ~~~ 225 (694)
T PRK15179 223 RKL 225 (694)
T ss_pred HHH
Confidence 443
No 41
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.76 E-value=7.9e-16 Score=112.36 Aligned_cols=188 Identities=19% Similarity=0.068 Sum_probs=165.0
Q ss_pred ChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHH
Q 024712 38 RPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEA 117 (263)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A 117 (263)
+...+....+..+.. +|....+|.-++.+|...|+.+.|.+.|++++...|++.+++.+.|..+...|++++|
T Consensus 50 d~~~A~~nlekAL~~-------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 50 DYAQAKKNLEKALEH-------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred CHHHHHHHHHHHHHh-------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHH
Confidence 344444444444444 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 024712 118 EKAYSSLLED--NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS 195 (263)
Q Consensus 118 ~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 195 (263)
...|++++.. .|..+.++.++|.|..+.|+++.|...|+++++.+|+.+.....++...+..|+|-.|..++++....
T Consensus 123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~ 202 (250)
T COG3063 123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQR 202 (250)
T ss_pred HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhc
Confidence 9999999973 23456799999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 196 QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 196 ~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
.+-....+.....+--..|+ -+.+-.+=.+.....|.
T Consensus 203 ~~~~A~sL~L~iriak~~gd---~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 203 GGAQAESLLLGIRIAKRLGD---RAAAQRYQAQLQRLFPY 239 (250)
T ss_pred ccccHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCCC
Confidence 88777777777788888999 77777777666677775
No 42
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.76 E-value=1.6e-16 Score=118.40 Aligned_cols=125 Identities=16% Similarity=0.061 Sum_probs=118.1
Q ss_pred cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HHcCC--hhHHHH
Q 024712 77 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA-KAQGN--FPTAIE 153 (263)
Q Consensus 77 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~--~~~A~~ 153 (263)
.++.++++..+++.+..+|+++..|..+|.++...|++++|+..|++++..+|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 567789999999999999999999999999999999999999999999999999999999999975 67777 599999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH
Q 024712 154 WLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL 201 (263)
Q Consensus 154 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 201 (263)
.++++++.+|+++.+++.+|..++..|++++|+.+|+++++..|.+..
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999999999999999999999999999999999887654
No 43
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=5.7e-17 Score=124.00 Aligned_cols=182 Identities=13% Similarity=0.039 Sum_probs=158.8
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 024712 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI 141 (263)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 141 (263)
..++.+..++.+|.+..+...|+..+...++.+|.++......+.++..++++++|.++|+.+++.+|.+.++...+|.-
T Consensus 254 ~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~ 333 (478)
T KOG1129|consen 254 PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVG 333 (478)
T ss_pred CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeec
Confidence 34677788899999999999999999999999999999999999999999999999999999999999998888888888
Q ss_pred HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHhcCCCCc
Q 024712 142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT---VPLYHLAYADVLYTLGGVDN 218 (263)
Q Consensus 142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~ 218 (263)
|+-.++++-|+.+|++.++..-.+++.+.++|.|++..++++-++.+|++++....+ -.++|+++|.+....|+
T Consensus 334 yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD--- 410 (478)
T KOG1129|consen 334 YFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD--- 410 (478)
T ss_pred cccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccc---
Confidence 888899999999999999998889999999999999999999999999988866432 25688999999888899
Q ss_pred HHHHHHHHHHhhccCCCcchhHHHhHHHH
Q 024712 219 ILLAKKYYASTIDLTGGKNTKALFGICLV 247 (263)
Q Consensus 219 ~~~A~~~~~~al~~~~~~~~~~~~~l~~~ 247 (263)
+.-|...|+-++..+++ ...++.+|++.
T Consensus 411 ~nlA~rcfrlaL~~d~~-h~ealnNLavL 438 (478)
T KOG1129|consen 411 FNLAKRCFRLALTSDAQ-HGEALNNLAVL 438 (478)
T ss_pred hHHHHHHHHHHhccCcc-hHHHHHhHHHH
Confidence 89999999988888885 66777766655
No 44
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.75 E-value=1.1e-15 Score=136.36 Aligned_cols=163 Identities=10% Similarity=-0.048 Sum_probs=149.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-------------C-
Q 024712 70 VSIAAMDCQCLDVAKDCIKVLQKQFPES----KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL-------------D- 131 (263)
Q Consensus 70 la~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-------------~- 131 (263)
++.+++..|++++|+..|+++++..|.+ ......++..+...|++++|+..++++....|. +
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~ 357 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD 357 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence 5889999999999999999999888765 345667777889999999999999999988763 1
Q ss_pred -HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024712 132 -PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL 210 (263)
Q Consensus 132 -~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 210 (263)
..++..++.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~a 437 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTA 437 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 3467789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 211 YTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 211 ~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
...|+ +++|...++++++..|+
T Consensus 438 l~~~~---~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 438 LDLQE---WRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHhCC---HHHHHHHHHHHHHhCCC
Confidence 99999 99999999999999997
No 45
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.73 E-value=1.9e-15 Score=120.62 Aligned_cols=186 Identities=17% Similarity=0.112 Sum_probs=163.1
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024712 61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA 140 (263)
Q Consensus 61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 140 (263)
.....+++++|..+-..|++++|+++|-++...--+++.+++.++.+|..+.+...|++++-++.++-|+++.++..++.
T Consensus 521 asc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~d 600 (840)
T KOG2003|consen 521 ASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLAD 600 (840)
T ss_pred hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHH
Confidence 34567777888888888999999999888888777888899999999999999999999999999999999999999999
Q ss_pred HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHH
Q 024712 141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL 220 (263)
Q Consensus 141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~ 220 (263)
+|-+.|+-.+|.+++-...+.+|.+.+....||..|....-+++|+.+|+++--+.|+.......++.|+...|+ |+
T Consensus 601 lydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgn---yq 677 (840)
T KOG2003|consen 601 LYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGN---YQ 677 (840)
T ss_pred HhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc---HH
Confidence 999999999999999888899999999888899999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 221 LAKKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 221 ~A~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
+|...|+..-...|. ++.-+..|...+..
T Consensus 678 ka~d~yk~~hrkfpe-dldclkflvri~~d 706 (840)
T KOG2003|consen 678 KAFDLYKDIHRKFPE-DLDCLKFLVRIAGD 706 (840)
T ss_pred HHHHHHHHHHHhCcc-chHHHHHHHHHhcc
Confidence 999999999888886 66666666555544
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.73 E-value=3.4e-15 Score=114.05 Aligned_cols=171 Identities=16% Similarity=0.069 Sum_probs=144.1
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH-----HHHH
Q 024712 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP-----VLHK 136 (263)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~ 136 (263)
....+..++|..|+..|-++.|..+|..+.+...--..+...+..+|....+|++|++.-++..+..+... ..+.
T Consensus 105 qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyC 184 (389)
T COG2956 105 QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYC 184 (389)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHH
Confidence 35566778888888889999999998888775545566788888899999999999999998888877653 3566
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHhcCC
Q 024712 137 RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV-PLYHLAYADVLYTLGG 215 (263)
Q Consensus 137 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~ 215 (263)
.++..+....+.+.|...+.++++.+|++..+-..+|.+....|+|++|++.++.+++.+|.. +.+...|..||..+|+
T Consensus 185 ELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~ 264 (389)
T COG2956 185 ELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK 264 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC
Confidence 777777778889999999999999999999998999999999999999999999999999887 5678888899999999
Q ss_pred CCcHHHHHHHHHHhhccCCC
Q 024712 216 VDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 216 ~~~~~~A~~~~~~al~~~~~ 235 (263)
.++...++.++.+.+++
T Consensus 265 ---~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 265 ---PAEGLNFLRRAMETNTG 281 (389)
T ss_pred ---HHHHHHHHHHHHHccCC
Confidence 89999999999888876
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.73 E-value=3.3e-15 Score=114.15 Aligned_cols=213 Identities=15% Similarity=0.105 Sum_probs=178.1
Q ss_pred HHHHHHHhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----cHHHH
Q 024712 27 YLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE-----SKRVG 101 (263)
Q Consensus 27 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-----~~~~~ 101 (263)
|+.-+.-.-...+++++++...++.. +|+..++...+|..+.+-|+.+.|+++-+.+++. |+ ...+.
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~-------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl 110 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQE-------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLAL 110 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhc-------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 33333333445677888888888776 8888999999999999999999999998877764 53 33567
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-----HHHHHHHHHHH
Q 024712 102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-----HDAWRELAEIY 176 (263)
Q Consensus 102 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~ 176 (263)
..+|.-|...|-++.|...|.........-..+...+..+|....+|++|+...++...+.|.+ +..+..++..+
T Consensus 111 ~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~ 190 (389)
T COG2956 111 QQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA 190 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH
Confidence 8899999999999999999999988665566889999999999999999999999999998876 45677888888
Q ss_pred HhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 177 VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 177 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
....+.+.|+..+.++++.+|+...+-..+|.++...|+ +++|++.++++++.||..-....-.|..|+-.
T Consensus 191 ~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~---y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~ 261 (389)
T COG2956 191 LASSDVDRARELLKKALQADKKCVRASIILGRVELAKGD---YQKAVEALERVLEQNPEYLSEVLEMLYECYAQ 261 (389)
T ss_pred hhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccc---hHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999 99999999999999997222333344444433
No 48
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.73 E-value=1.6e-15 Score=135.31 Aligned_cols=166 Identities=10% Similarity=-0.007 Sum_probs=153.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 024712 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK 143 (263)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 143 (263)
+........++.-.|+.++|+..+.++....|....++..+|.++...|++++|+..+++++..+|.++.++..++.++.
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~ 94 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 33334445556778999999999999998889899999999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHH
Q 024712 144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK 223 (263)
Q Consensus 144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~ 223 (263)
..|++++|+..++++++.+|+++. +..+|.++...|++++|+..++++++..|+++.++..++.++...|. .++|+
T Consensus 95 ~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~---~e~Al 170 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL---SAPAL 170 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---hHHHH
Confidence 999999999999999999999999 99999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhccCC
Q 024712 224 KYYASTIDLTG 234 (263)
Q Consensus 224 ~~~~~al~~~~ 234 (263)
..++++.. .|
T Consensus 171 ~~l~~~~~-~p 180 (765)
T PRK10049 171 GAIDDANL-TP 180 (765)
T ss_pred HHHHhCCC-CH
Confidence 99998776 54
No 49
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=4.5e-16 Score=119.15 Aligned_cols=202 Identities=15% Similarity=0.048 Sum_probs=176.2
Q ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHH
Q 024712 23 GAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGR 102 (263)
Q Consensus 23 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 102 (263)
+-+.+|.+...+- ..+..++......++. -|.+......++.++-..++.++|.++|+.+++.+|.+.++..
T Consensus 257 dTfllLskvY~ri-dQP~~AL~~~~~gld~-------fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiA 328 (478)
T KOG1129|consen 257 DTFLLLSKVYQRI-DQPERALLVIGEGLDS-------FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIA 328 (478)
T ss_pred hHHHHHHHHHHHh-ccHHHHHHHHhhhhhc-------CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeee
Confidence 4444444444332 3344444444444444 5667777888899999999999999999999999999999999
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC---CCHHHHHHHHHHHHhc
Q 024712 103 LEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM---ADHDAWRELAEIYVSL 179 (263)
Q Consensus 103 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~ 179 (263)
..|.-|+..++.+-|+.+|++++...-.++..+.++|.|++..+.++-++..|++++..-. .-.++|+++|.+....
T Consensus 329 cia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~i 408 (478)
T KOG1129|consen 329 CIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTI 408 (478)
T ss_pred eeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEec
Confidence 9999999999999999999999999999999999999999999999999999999998643 2368999999999999
Q ss_pred ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 180 QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 180 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
|++.-|..+|+-++..+|++..++.+||.+-...|+ ..+|..++..+-..+|+
T Consensus 409 GD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~---i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 409 GDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGD---ILGARSLLNAAKSVMPD 461 (478)
T ss_pred cchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCc---hHHHHHHHHHhhhhCcc
Confidence 999999999999999999999999999999999999 99999999999999997
No 50
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.72 E-value=3e-15 Score=132.22 Aligned_cols=190 Identities=11% Similarity=-0.049 Sum_probs=160.3
Q ss_pred ccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHH
Q 024712 56 RSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLH 135 (263)
Q Consensus 56 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 135 (263)
.....|..+......+...++.|+++.|+..|+++++.+|.++....-+..++...|+.++|+.++++++...|......
T Consensus 26 ~~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~l 105 (822)
T PRK14574 26 GFVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGL 105 (822)
T ss_pred ccccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHH
Confidence 34567788888888999999999999999999999999999864434778888888999999999999995445555566
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 024712 136 KRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 215 (263)
Q Consensus 136 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 215 (263)
..+|.++...|++++|+..|+++++.+|+++.++..++..+...++.++|+..++++...+|.+... ..++.++...++
T Consensus 106 lalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~ 184 (822)
T PRK14574 106 ASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDR 184 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcch
Confidence 6668899999999999999999999999999999999999999999999999999999999986554 555555555666
Q ss_pred CCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 216 VDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 216 ~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
..+|+..|+++++.+|+ +...+..+......
T Consensus 185 ---~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~ 215 (822)
T PRK14574 185 ---NYDALQASSEAVRLAPT-SEEVLKNHLEILQR 215 (822)
T ss_pred ---HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 77799999999999997 66666655555443
No 51
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.72 E-value=2.2e-15 Score=112.19 Aligned_cols=167 Identities=14% Similarity=0.032 Sum_probs=154.9
Q ss_pred cCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHH
Q 024712 59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR 138 (263)
Q Consensus 59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 138 (263)
.+|+...+ ...+..+...|+-+.+..+..++...+|.+..+...+|...+..|+|..|+..++++....|++..+|..+
T Consensus 62 ~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 62 RNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred cCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 36777777 88888889999999999999999989999988888899999999999999999999999999999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCc
Q 024712 139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDN 218 (263)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 218 (263)
|.+|.+.|++++|...|.+++++.|+++.+..++|..+...|+++.|..++..+....+.+..+..+++.+....|+
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~--- 217 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGD--- 217 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCC---
Confidence 99999999999999999999999999999999999999999999999999999999989899999999999999999
Q ss_pred HHHHHHHHHHh
Q 024712 219 ILLAKKYYAST 229 (263)
Q Consensus 219 ~~~A~~~~~~a 229 (263)
+++|...-..-
T Consensus 218 ~~~A~~i~~~e 228 (257)
T COG5010 218 FREAEDIAVQE 228 (257)
T ss_pred hHHHHhhcccc
Confidence 99998766543
No 52
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.71 E-value=1.7e-15 Score=130.06 Aligned_cols=187 Identities=21% Similarity=0.193 Sum_probs=151.6
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHH----------------------------------
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEG---------------------------------- 105 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a---------------------------------- 105 (263)
.|...+.+..++-.....++..+|...++.+++.+..++.++..+|
T Consensus 526 hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Yslia 605 (1018)
T KOG2002|consen 526 HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIA 605 (1018)
T ss_pred CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHH
Confidence 5555555555554445555555666666666655555555555554
Q ss_pred --HHHHH------------cCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHH
Q 024712 106 --ILLEA------------KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE 171 (263)
Q Consensus 106 --~~~~~------------~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 171 (263)
+++++ .+.+++|++.|.+++..+|.|..+-..+|.++...|++.+|..+|.++.+...++.++|.+
T Consensus 606 LGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lN 685 (1018)
T KOG2002|consen 606 LGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLN 685 (1018)
T ss_pred hhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeee
Confidence 43332 2567899999999999999999999999999999999999999999999988888999999
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHh
Q 024712 172 LAEIYVSLQMYKQAAFCYEELILSQ--PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMF 249 (263)
Q Consensus 172 la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~ 249 (263)
+|.||..+|+|..|++.|+.+++.. .+++.+...||.+++..|. +.+|......++...|. ++...+.++++.+
T Consensus 686 lah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~---~~eak~~ll~a~~~~p~-~~~v~FN~a~v~k 761 (1018)
T KOG2002|consen 686 LAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGK---LQEAKEALLKARHLAPS-NTSVKFNLALVLK 761 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHhCCc-cchHHhHHHHHHH
Confidence 9999999999999999999999764 3568899999999999999 99999999999999996 7778888777766
Q ss_pred h
Q 024712 250 V 250 (263)
Q Consensus 250 ~ 250 (263)
.
T Consensus 762 k 762 (1018)
T KOG2002|consen 762 K 762 (1018)
T ss_pred H
Confidence 6
No 53
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.71 E-value=1e-14 Score=126.77 Aligned_cols=143 Identities=8% Similarity=-0.084 Sum_probs=137.2
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV 139 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 139 (263)
.|....++..+|.+....|.+++|...++.+++..|++..+...++.++.+.+++++|+..+++++..+|++...+..+|
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 66778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHH
Q 024712 140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLY 202 (263)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 202 (263)
.++...|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++....-...
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 999999999999999999999999999999999999999999999999999999887655444
No 54
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.70 E-value=1.1e-15 Score=107.55 Aligned_cols=113 Identities=19% Similarity=0.140 Sum_probs=66.0
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC
Q 024712 120 AYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV 199 (263)
Q Consensus 120 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 199 (263)
.+++++..+|++......+|..+...|++++|+..+++++..+|.++.+|..+|.++...|++++|+.++++++..+|.+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 200 PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
+..+..+|.++...|+ +++|...|+++++++|+
T Consensus 85 ~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 85 PRPYFHAAECLLALGE---PESALKALDLAIEICGE 117 (135)
T ss_pred hHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhccc
Confidence 5555555555555555 55555555555555554
No 55
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.70 E-value=1.5e-15 Score=107.03 Aligned_cols=119 Identities=18% Similarity=0.054 Sum_probs=114.0
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC
Q 024712 85 DCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164 (263)
Q Consensus 85 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 164 (263)
..+++++...|++..+...+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHH
Q 024712 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH 203 (263)
Q Consensus 165 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 203 (263)
++..++.+|.++...|++++|+..++++++.+|++....
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 999999999999999999999999999999999886643
No 56
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.70 E-value=6.8e-15 Score=126.46 Aligned_cols=188 Identities=14% Similarity=0.067 Sum_probs=129.1
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHH
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE-SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR 138 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 138 (263)
.|++...+...|.+.+..++|..|+.+|+.++..+|. -+......|.++..+|+.+.|+..|.++++++|.+..++..|
T Consensus 160 sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L 239 (1018)
T KOG2002|consen 160 SPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVAL 239 (1018)
T ss_pred CCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHH
Confidence 6666777777777777788888888888888887773 345566677777777887888888888888777777777777
Q ss_pred HHHHHHcCC---hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHh
Q 024712 139 VAIAKAQGN---FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV---PLYHLAYADVLYT 212 (263)
Q Consensus 139 ~~~~~~~g~---~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~ 212 (263)
|.+-....+ +..++..+.++...+|.+|.+...|+..++..|+|..+..+...++...-.. ...++.+|.+|..
T Consensus 240 ~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha 319 (1018)
T KOG2002|consen 240 GEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHA 319 (1018)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 766655443 5567777777777777777777777777666677776666666666555333 2346666777777
Q ss_pred cCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 213 LGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 213 ~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
+|+ +++|..+|..+++.+|+..+..++||+..+..
T Consensus 320 ~Gd---~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~ 354 (1018)
T KOG2002|consen 320 QGD---FEKAFKYYMESLKADNDNFVLPLVGLGQMYIK 354 (1018)
T ss_pred hcc---HHHHHHHHHHHHccCCCCccccccchhHHHHH
Confidence 776 77777777776666665335555666555443
No 57
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.70 E-value=6.5e-14 Score=116.05 Aligned_cols=204 Identities=12% Similarity=0.028 Sum_probs=153.0
Q ss_pred hccCChhHHHHHHHHHhcCcccccccCcch-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Q 024712 34 LKVRRPDKVLRHGLSILNDPKKRSALGPDV-WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG 112 (263)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~ 112 (263)
...++.+.+.......... +|+. .......+..+...|+++.|...++++.+..|+++.+...++.+|...|
T Consensus 129 ~~~g~~~~A~~~l~~A~~~-------~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~g 201 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL-------ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTG 201 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc-------CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 3344444444444444333 4443 3333345888889999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhc------------------------------------------CCCCHHHHHHHHHHHHHcCChhH
Q 024712 113 LWAEAEKAYSSLLED------------------------------------------NPLDPVLHKRRVAIAKAQGNFPT 150 (263)
Q Consensus 113 ~~~~A~~~~~~~~~~------------------------------------------~p~~~~~~~~l~~~~~~~g~~~~ 150 (263)
+|++|+..+.++.+. .|+++.+...++..+...|+.++
T Consensus 202 dw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~ 281 (398)
T PRK10747 202 AWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDT 281 (398)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHH
Confidence 999998666655532 23355566777888889999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 024712 151 AIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI 230 (263)
Q Consensus 151 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al 230 (263)
|...++++++. |.++......+.+ ..++.++++..+++.++.+|+++..+..+|.++...|+ +++|..+|++++
T Consensus 282 A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~---~~~A~~~le~al 355 (398)
T PRK10747 282 AQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGE---WQEASLAFRAAL 355 (398)
T ss_pred HHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHH
Confidence 99999999984 4455544444443 44889999999999999999999999999999999999 999999999999
Q ss_pred ccCCCcchhHHHhHHHHHhh
Q 024712 231 DLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 231 ~~~~~~~~~~~~~l~~~~~~ 250 (263)
+..|+......++.+....+
T Consensus 356 ~~~P~~~~~~~La~~~~~~g 375 (398)
T PRK10747 356 KQRPDAYDYAWLADALDRLH 375 (398)
T ss_pred hcCCCHHHHHHHHHHHHHcC
Confidence 99996322244555544333
No 58
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.69 E-value=6.2e-15 Score=113.79 Aligned_cols=153 Identities=16% Similarity=0.125 Sum_probs=134.0
Q ss_pred CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHH---H
Q 024712 95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD---A 168 (263)
Q Consensus 95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~ 168 (263)
+..+..++.+|..+...|++++|+..+++++..+|+++ .++..+|.++...|++++|+..++++++.+|+++. +
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 45778899999999999999999999999999999876 57899999999999999999999999999998876 6
Q ss_pred HHHHHHHHHhc--------ccHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHhcCCCCcHHHHH
Q 024712 169 WRELAEIYVSL--------QMYKQAAFCYEELILSQPTVPLYH-----------------LAYADVLYTLGGVDNILLAK 223 (263)
Q Consensus 169 ~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~~~~~~g~~~~~~~A~ 223 (263)
++.+|.++... |++++|+..+++++..+|++...+ ..+|.+++..|+ +.+|+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~---~~~A~ 186 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGA---YVAAI 186 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---hHHHH
Confidence 89999999876 899999999999999999986432 367889999999 99999
Q ss_pred HHHHHhhccCCC--cchhHHHhHHHHHhh
Q 024712 224 KYYASTIDLTGG--KNTKALFGICLVMFV 250 (263)
Q Consensus 224 ~~~~~al~~~~~--~~~~~~~~l~~~~~~ 250 (263)
..|++++...|+ ....+++.++.+...
T Consensus 187 ~~~~~al~~~p~~~~~~~a~~~l~~~~~~ 215 (235)
T TIGR03302 187 NRFETVVENYPDTPATEEALARLVEAYLK 215 (235)
T ss_pred HHHHHHHHHCCCCcchHHHHHHHHHHHHH
Confidence 999999999875 234666666666554
No 59
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.68 E-value=1.1e-14 Score=112.34 Aligned_cols=194 Identities=17% Similarity=0.175 Sum_probs=147.7
Q ss_pred hhHHHHHHHHHhcCcc---------cccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 024712 39 PDKVLRHGLSILNDPK---------KRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLE 109 (263)
Q Consensus 39 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~ 109 (263)
.+.-++++..++.... .....+|++..+++..+..|+..|+-..|+.-+.+.++..|+...+....|.++.
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhh
Confidence 3444555555543321 2344577778888888888888888888888888888888888888888888888
Q ss_pred HcCcHHHHHHHHHHHHhcCCCCHH---HH------------HHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 024712 110 AKGLWAEAEKAYSSLLEDNPLDPV---LH------------KRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE 174 (263)
Q Consensus 110 ~~~~~~~A~~~~~~~~~~~p~~~~---~~------------~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 174 (263)
.+|+++.|...|+.++..+|++.. +. ......++..|+...|+......+++.|=+...+...+.
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rak 197 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAK 197 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHH
Confidence 888888888888888887775421 11 222333445677888888888888888888888888888
Q ss_pred HHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 175 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
||...|+...||..++.+-++..++...++.++.+++..|+ .+.++...+.+++++|+
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd---~~~sL~~iRECLKldpd 255 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGD---AENSLKEIRECLKLDPD 255 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhh---HHHHHHHHHHHHccCcc
Confidence 88888888888888888888888888888888888888888 88888888888888886
No 60
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.68 E-value=1.5e-14 Score=107.78 Aligned_cols=168 Identities=17% Similarity=0.124 Sum_probs=153.6
Q ss_pred CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 024712 78 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK 157 (263)
Q Consensus 78 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 157 (263)
.+...+...+-.....+|++..+ ..++..+...|+-+.+..+..++...+|.+...+..+|...+..|++..|+..+++
T Consensus 47 ~q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rk 125 (257)
T COG5010 47 RQTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRK 125 (257)
T ss_pred HhhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 34444667777778889999999 99999999999999999999999999999999988899999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcc
Q 024712 158 YLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKN 237 (263)
Q Consensus 158 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~ 237 (263)
+....|++..+|..+|.+|.+.|+++.|...|.+++++.|+++.+..++|..++..|+ ++.|..++.++....+. +
T Consensus 126 A~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd---~~~A~~lll~a~l~~~a-d 201 (257)
T COG5010 126 AARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD---LEDAETLLLPAYLSPAA-D 201 (257)
T ss_pred HhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC---HHHHHHHHHHHHhCCCC-c
Confidence 9999999999999999999999999999999999999999999999999999999999 99999999999877664 7
Q ss_pred hhHHHhHHHHHhh
Q 024712 238 TKALFGICLVMFV 250 (263)
Q Consensus 238 ~~~~~~l~~~~~~ 250 (263)
.+..-.++++...
T Consensus 202 ~~v~~NLAl~~~~ 214 (257)
T COG5010 202 SRVRQNLALVVGL 214 (257)
T ss_pred hHHHHHHHHHHhh
Confidence 7777788777666
No 61
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=8.4e-15 Score=116.95 Aligned_cols=182 Identities=16% Similarity=-0.012 Sum_probs=163.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024712 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA 142 (263)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 142 (263)
++.+..+.|.+.+..|++++|.+.|+.++..+.....++++.|..+...|+.++|+.+|-+...+--++..++..++.+|
T Consensus 489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiy 568 (840)
T KOG2003|consen 489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIY 568 (840)
T ss_pred CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45566667888888999999999999999988888999999999999999999999999999888888899999999999
Q ss_pred HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHH
Q 024712 143 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLA 222 (263)
Q Consensus 143 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A 222 (263)
..+.+..+|++++.++..+-|+++.++..||.+|-..|+-.+|..++-......|.+......||..|....- .++|
T Consensus 569 e~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf---~eka 645 (840)
T KOG2003|consen 569 ELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQF---SEKA 645 (840)
T ss_pred HHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHH---HHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998888 9999
Q ss_pred HHHHHHhhccCCCcchhHHHhHHHHH
Q 024712 223 KKYYASTIDLTGGKNTKALFGICLVM 248 (263)
Q Consensus 223 ~~~~~~al~~~~~~~~~~~~~l~~~~ 248 (263)
+.+|+++--+.|+ .......++.|.
T Consensus 646 i~y~ekaaliqp~-~~kwqlmiasc~ 670 (840)
T KOG2003|consen 646 INYFEKAALIQPN-QSKWQLMIASCF 670 (840)
T ss_pred HHHHHHHHhcCcc-HHHHHHHHHHHH
Confidence 9999999989885 444444444443
No 62
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=3e-14 Score=116.21 Aligned_cols=178 Identities=12% Similarity=0.034 Sum_probs=137.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 024712 68 EQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN 147 (263)
Q Consensus 68 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 147 (263)
..+| ++...|+..+-..+-.++++.+|+.+..|+..|..|...|++++|..+|.++..++|....+|..+|..+.-.|.
T Consensus 283 ~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~E 361 (611)
T KOG1173|consen 283 LHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGE 361 (611)
T ss_pred HHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcch
Confidence 3455 788889998888888999999999999999999999999999999999999999999999999999988887777
Q ss_pred hhHHHHHHHHH----------------------------------HHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 024712 148 FPTAIEWLNKY----------------------------------LETFMADHDAWRELAEIYVSLQMYKQAAFCYEELI 193 (263)
Q Consensus 148 ~~~A~~~~~~~----------------------------------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 193 (263)
.++|+.+|..| +.+.|.++-+...+|.+.+..+.|.+|..+|+.++
T Consensus 362 hdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l 441 (611)
T KOG1173|consen 362 HDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKAL 441 (611)
T ss_pred HHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHH
Confidence 66666666554 44556666666666666666666666666666666
Q ss_pred hhCC----CC---HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 194 LSQP----TV---PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 194 ~~~p----~~---~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
..-+ .. ...+.+||.++.+++. +++|+.+|++++.+.|. ++...-++++++..
T Consensus 442 ~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~---~~eAI~~~q~aL~l~~k-~~~~~asig~iy~l 501 (611)
T KOG1173|consen 442 EVIKSVLNEKIFWEPTLNNLGHAYRKLNK---YEEAIDYYQKALLLSPK-DASTHASIGYIYHL 501 (611)
T ss_pred HHhhhccccccchhHHHHhHHHHHHHHhh---HHHHHHHHHHHHHcCCC-chhHHHHHHHHHHH
Confidence 2211 11 1247788888888888 88888888888888885 77766666666543
No 63
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.66 E-value=7.3e-14 Score=114.49 Aligned_cols=169 Identities=15% Similarity=0.020 Sum_probs=141.5
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC----cHHHHHHHHHHHHhcCCCCHHHHHH
Q 024712 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG----LWAEAEKAYSSLLEDNPLDPVLHKR 137 (263)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~----~~~~A~~~~~~~~~~~p~~~~~~~~ 137 (263)
+........+..+...|++++|...++++++.+|++..++.. +..+...| ....+...+......+|........
T Consensus 41 ~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 119 (355)
T cd05804 41 TERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGM 119 (355)
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHH
Confidence 445556667888899999999999999999999998877665 55555544 4444555444444566777788888
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHhc
Q 024712 138 RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP----LYHLAYADVLYTL 213 (263)
Q Consensus 138 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~ 213 (263)
+|.++...|++++|+..++++++..|+++.++..+|.++...|++++|+.++++++...|.++ ..+..+|.++...
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999999999999999887543 2466899999999
Q ss_pred CCCCcHHHHHHHHHHhhccCC
Q 024712 214 GGVDNILLAKKYYASTIDLTG 234 (263)
Q Consensus 214 g~~~~~~~A~~~~~~al~~~~ 234 (263)
|+ +++|+..|++++...|
T Consensus 200 G~---~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 200 GD---YEAALAIYDTHIAPSA 217 (355)
T ss_pred CC---HHHHHHHHHHHhcccc
Confidence 99 9999999999987666
No 64
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.66 E-value=6e-14 Score=108.32 Aligned_cols=188 Identities=15% Similarity=0.021 Sum_probs=168.4
Q ss_pred cCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHH
Q 024712 59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR 138 (263)
Q Consensus 59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 138 (263)
-+|....-...+|..++..|++..|+..|..+++.+|++..+++..|.+|..+|+-..|+..+.+++++.|+...+....
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 35567777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCHH---------------HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHH
Q 024712 139 VAIAKAQGNFPTAIEWLNKYLETFMADHD---------------AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH 203 (263)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~---------------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 203 (263)
|.++.++|.+++|+..|+.++..+|++.. .+......++..|++..|+......+++.|-+...+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~ 192 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLR 192 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHH
Confidence 99999999999999999999999996621 233455667788999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 204 LAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 204 ~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
...+.||...|+ ...|+..++.+-++..+ +...+|-+....+.
T Consensus 193 ~~Rakc~i~~~e---~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~ 235 (504)
T KOG0624|consen 193 QARAKCYIAEGE---PKKAIHDLKQASKLSQD-NTEGHYKISQLLYT 235 (504)
T ss_pred HHHHHHHHhcCc---HHHHHHHHHHHHhcccc-chHHHHHHHHHHHh
Confidence 999999999999 99999999999999775 77777766555444
No 65
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=3.4e-14 Score=112.04 Aligned_cols=179 Identities=17% Similarity=0.092 Sum_probs=148.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 024712 67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG 146 (263)
Q Consensus 67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 146 (263)
|.--+...+..+++..|+.+-++.++.+|.+..++.+.|..+...|+.++|+-.|+.+..+.|....+|..+..+|...|
T Consensus 303 wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 303 WFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhc
Confidence 33345556778899999999999999999999999999999999999999999999999999999999888888888877
Q ss_pred ChhHHH------------------------------------HHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHH
Q 024712 147 NFPTAI------------------------------------EWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYE 190 (263)
Q Consensus 147 ~~~~A~------------------------------------~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 190 (263)
++.+|. .++++++.+.|....+-..+|.++...|.++.++.+++
T Consensus 383 ~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 383 RFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred hHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 755554 45555555666666677778888888899999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 191 ELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 191 ~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
+.+...|+ ...+..||+++...+. +++|..+|..++.++|. +.++..|+-..-+.
T Consensus 463 ~~L~~~~D-~~LH~~Lgd~~~A~Ne---~Q~am~~y~~ALr~dP~-~~~sl~Gl~~lEK~ 517 (564)
T KOG1174|consen 463 KHLIIFPD-VNLHNHLGDIMRAQNE---PQKAMEYYYKALRQDPK-SKRTLRGLRLLEKS 517 (564)
T ss_pred HHHhhccc-cHHHHHHHHHHHHhhh---HHHHHHHHHHHHhcCcc-chHHHHHHHHHHhc
Confidence 99888775 4568889999999999 99999999999999996 88888888776544
No 66
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=3.7e-15 Score=113.09 Aligned_cols=116 Identities=21% Similarity=0.208 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 024712 100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL 179 (263)
Q Consensus 100 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 179 (263)
-+..-|.-+...++|.+|+..|.++|.++|.++..|.+.+.+|.++|.++.|++.++.++.++|....+|..||.+|..+
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc
Confidence 34556778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 024712 180 QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 215 (263)
Q Consensus 180 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 215 (263)
|++.+|+..|+++|.++|++..++.+|..+-..++.
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 999999999999999999999888888888877777
No 67
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.66 E-value=2e-13 Score=113.10 Aligned_cols=168 Identities=13% Similarity=0.044 Sum_probs=142.2
Q ss_pred cCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------------------------------------------CCC
Q 024712 59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ------------------------------------------FPE 96 (263)
Q Consensus 59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------------------------------------------~p~ 96 (263)
..|+++.++..++..+...|++++|+.++..+.+. .|+
T Consensus 182 ~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~ 261 (398)
T PRK10747 182 VAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRH 261 (398)
T ss_pred cCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhC
Confidence 37888888888888888899999888666555532 234
Q ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024712 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY 176 (263)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 176 (263)
++.+...++..+...|+.++|...++++++. |.++.....++.+ ..++.++++..+++.++.+|+++..+..+|.++
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~ 338 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLL 338 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 6667777888999999999999999999995 4455544444443 459999999999999999999999999999999
Q ss_pred HhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccC
Q 024712 177 VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT 233 (263)
Q Consensus 177 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~ 233 (263)
...|++++|...|+++++..|++.. +..++.++...|+ .++|..+|++++.+.
T Consensus 339 ~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~---~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 339 MKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHK---PEEAAAMRRDGLMLT 391 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCC---HHHHHHHHHHHHhhh
Confidence 9999999999999999999998654 5689999999999 999999999998764
No 68
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.65 E-value=9.4e-15 Score=121.51 Aligned_cols=174 Identities=16% Similarity=0.148 Sum_probs=148.9
Q ss_pred cccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-
Q 024712 57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ--------FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED- 127 (263)
Q Consensus 57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~- 127 (263)
....|..+.+...++..|...|++++|...++.+++. .|.-......+|.+|...+++.+|+..|++++.+
T Consensus 192 ~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~ 271 (508)
T KOG1840|consen 192 GDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR 271 (508)
T ss_pred ccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 4457788888888999999999999999999999998 5555555667999999999999999999999985
Q ss_pred ----CCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC--------CCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 024712 128 ----NPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM--------ADHDAWRELAEIYVSLQMYKQAAFCYEEL 192 (263)
Q Consensus 128 ----~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~a 192 (263)
.+++ ..++.+++.+|...|++++|..++++++++.. .-...+..++.++...+++++|..+++++
T Consensus 272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a 351 (508)
T KOG1840|consen 272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA 351 (508)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 2334 46889999999999999999999999998742 22456788999999999999999999999
Q ss_pred HhhC-----CCC---HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccC
Q 024712 193 ILSQ-----PTV---PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT 233 (263)
Q Consensus 193 l~~~-----p~~---~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~ 233 (263)
+++. +.+ +..+.++|.+|+..|+ +++|.++|++++++.
T Consensus 352 l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk---~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 352 LKIYLDAPGEDNVNLAKIYANLAELYLKMGK---YKEAEELYKKAIQIL 397 (508)
T ss_pred HHHHHhhccccchHHHHHHHHHHHHHHHhcc---hhHHHHHHHHHHHHH
Confidence 8762 233 5578999999999999 999999999999875
No 69
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.65 E-value=6.7e-15 Score=102.73 Aligned_cols=105 Identities=14% Similarity=0.112 Sum_probs=84.4
Q ss_pred hcC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHH
Q 024712 126 EDN-PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL 204 (263)
Q Consensus 126 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 204 (263)
... ++..+..+.+|..++..|++++|...|+-+...+|.+...|++||.++..+|+|.+|+.+|.+++.++|++|.++.
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 345 5666777778888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhhccC
Q 024712 205 AYADVLYTLGGVDNILLAKKYYASTIDLT 233 (263)
Q Consensus 205 ~la~~~~~~g~~~~~~~A~~~~~~al~~~ 233 (263)
++|.|++..|+ .+.|++.|+.++...
T Consensus 108 ~ag~c~L~lG~---~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 108 AAAECYLACDN---VCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHcCC---HHHHHHHHHHHHHHh
Confidence 88888888888 888888888887775
No 70
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.64 E-value=1.1e-13 Score=113.33 Aligned_cols=172 Identities=16% Similarity=-0.002 Sum_probs=147.0
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHH
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHK 136 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 136 (263)
+|+.+..+..++..+...|+.+.+...+.++.+..|.+ .......+.++...|++++|...+++++..+|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 68999999999999999999999999999988888743 456778899999999999999999999999999987766
Q ss_pred HHHHHHHHcCC----hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 024712 137 RRVAIAKAQGN----FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT 212 (263)
Q Consensus 137 ~l~~~~~~~g~----~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 212 (263)
. +..+...|+ ...+...+......+|.....+..+|.++...|++++|+..++++++..|+++.++..+|.+++.
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 4 555555444 44444444443356777778888899999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHhhccCCC
Q 024712 213 LGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 213 ~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
.|+ +++|+.++.+++...|.
T Consensus 161 ~g~---~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 161 QGR---FKEGIAFMESWRDTWDC 180 (355)
T ss_pred cCC---HHHHHHHHHhhhhccCC
Confidence 999 99999999999998764
No 71
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.64 E-value=3.4e-13 Score=115.42 Aligned_cols=201 Identities=16% Similarity=0.148 Sum_probs=139.7
Q ss_pred ChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHH
Q 024712 38 RPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEA 117 (263)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A 117 (263)
+.+++..+...++.. +|..+.+|..+|.++-+.|+.+++...+-.+-.++|.+...|..++......|.++.|
T Consensus 154 ~~eeA~~i~~EvIkq-------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 154 DLEEAEEILMEVIKQ-------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred CHHHHHHHHHHHHHh-------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence 344555555555444 6666666777777777777777777776666666776667777777777777777777
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC---------------------------------
Q 024712 118 EKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--------------------------------- 164 (263)
Q Consensus 118 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~--------------------------------- 164 (263)
.-+|.++++.+|.+.......+.+|.+.|+...|...|.+++...|.
T Consensus 227 ~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 227 RYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77777777777776666666666666666666666666554444321
Q ss_pred --------------------------------------------------------------------------------
Q 024712 165 -------------------------------------------------------------------------------- 164 (263)
Q Consensus 165 -------------------------------------------------------------------------------- 164 (263)
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic 386 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC 386 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence
Q ss_pred --------------------------CHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHhcCCCC
Q 024712 165 --------------------------DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV-PLYHLAYADVLYTLGGVD 217 (263)
Q Consensus 165 --------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~ 217 (263)
+++.+..++..+...|++.+|+.++..+....+.. ..+|..+|.||..+|.
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e-- 464 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE-- 464 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh--
Confidence 13345567888888899999999998888776643 5689999999999999
Q ss_pred cHHHHHHHHHHhhccCCCcchhHHHhHHHHHh
Q 024712 218 NILLAKKYYASTIDLTGGKNTKALFGICLVMF 249 (263)
Q Consensus 218 ~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~ 249 (263)
++.|+.+|.+++...|+ +..+...|.-...
T Consensus 465 -~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~ 494 (895)
T KOG2076|consen 465 -YEEAIEFYEKVLILAPD-NLDARITLASLYQ 494 (895)
T ss_pred -HHHHHHHHHHHHhcCCC-chhhhhhHHHHHH
Confidence 99999999999999997 5444444444433
No 72
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.63 E-value=3.1e-13 Score=112.22 Aligned_cols=198 Identities=12% Similarity=0.035 Sum_probs=167.4
Q ss_pred CChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHH
Q 024712 37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAE 116 (263)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~ 116 (263)
+.-+....+....+.. -|.....|...+......|+...|+.++..+++.+|++..+|+....+.+...+++.
T Consensus 564 gt~Esl~Allqkav~~-------~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~er 636 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQ-------CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELER 636 (913)
T ss_pred CcHHHHHHHHHHHHHh-------CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHH
Confidence 3334444444444443 555566677778888888999999999999999999999999998899999999999
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC
Q 024712 117 AEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ 196 (263)
Q Consensus 117 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 196 (263)
|..+|.++....|+ ..+|..-+.+...+++.++|+..++++++.+|.....|..+|.++...++.+.|...|...++..
T Consensus 637 aR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c 715 (913)
T KOG0495|consen 637 ARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC 715 (913)
T ss_pred HHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC
Confidence 99999999987665 56777888888889999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHH
Q 024712 197 PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICL 246 (263)
Q Consensus 197 p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~ 246 (263)
|+.+..|..++.+-...|+ .-.|...+.++.-.||+ +...|...+.
T Consensus 716 P~~ipLWllLakleEk~~~---~~rAR~ildrarlkNPk-~~~lwle~Ir 761 (913)
T KOG0495|consen 716 PNSIPLWLLLAKLEEKDGQ---LVRARSILDRARLKNPK-NALLWLESIR 761 (913)
T ss_pred CCCchHHHHHHHHHHHhcc---hhhHHHHHHHHHhcCCC-cchhHHHHHH
Confidence 9999999999999999998 99999999999999996 6666654443
No 73
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.63 E-value=8.1e-14 Score=122.36 Aligned_cols=187 Identities=11% Similarity=-0.012 Sum_probs=160.3
Q ss_pred cccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH----
Q 024712 57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---- 132 (263)
Q Consensus 57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---- 132 (263)
...+|....++.+++..+...+++++|+.+++..++.+|+...+++.+|.++.+.+++.++..+ .++..-+.+.
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 3457889999999999999999999999999999999999999999999999999888777665 6655555444
Q ss_pred ---------------HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh--
Q 024712 133 ---------------VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS-- 195 (263)
Q Consensus 133 ---------------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 195 (263)
.+++.+|.||-++|+.++|...|+++++.+|.++.+..++|..|... +.++|+.++.+|+..
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI 180 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999888 999999988888754
Q ss_pred ------------------CCCCHHH--------HHHHH------------HHHHhcCCCCcHHHHHHHHHHhhccCCCcc
Q 024712 196 ------------------QPTVPLY--------HLAYA------------DVLYTLGGVDNILLAKKYYASTIDLTGGKN 237 (263)
Q Consensus 196 ------------------~p~~~~~--------~~~la------------~~~~~~g~~~~~~~A~~~~~~al~~~~~~~ 237 (263)
+|.+... ...++ .+|...++ +++++..++.+++.+|. +
T Consensus 181 ~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~---~~~~i~iLK~iL~~~~~-n 256 (906)
T PRK14720 181 KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALED---WDEVIYILKKILEHDNK-N 256 (906)
T ss_pred hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhh---hhHHHHHHHHHHhcCCc-c
Confidence 3443322 11223 66667777 99999999999999996 9
Q ss_pred hhHHHhHHHHHhh
Q 024712 238 TKALFGICLVMFV 250 (263)
Q Consensus 238 ~~~~~~l~~~~~~ 250 (263)
.++..+++.|+..
T Consensus 257 ~~a~~~l~~~y~~ 269 (906)
T PRK14720 257 NKAREELIRFYKE 269 (906)
T ss_pred hhhHHHHHHHHHH
Confidence 9999999999886
No 74
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.62 E-value=3.8e-13 Score=119.11 Aligned_cols=195 Identities=14% Similarity=0.010 Sum_probs=162.1
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHH
Q 024712 25 WEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLE 104 (263)
Q Consensus 25 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 104 (263)
..+...+.....++...++......+.. +|........++.++...|+.++|+.++++++...|........+
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~-------~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llal 108 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKA-------GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASA 108 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhh-------CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHH
Confidence 4566666677777777888888777766 666532222777788888999999999999994444555566666
Q ss_pred HHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHH
Q 024712 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQ 184 (263)
Q Consensus 105 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 184 (263)
|.++...|++++|++.|+++++.+|+++.++..++..+...++.++|+..+++++..+|..... ..++.++...++..+
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~ 187 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYD 187 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHH
Confidence 8899999999999999999999999999999999999999999999999999999999986554 556666666777777
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 024712 185 AAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI 230 (263)
Q Consensus 185 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al 230 (263)
|+..++++++.+|++..++..+..++...|- ...|.+...+--
T Consensus 188 AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~---~~~a~~l~~~~p 230 (822)
T PRK14574 188 ALQASSEAVRLAPTSEEVLKNHLEILQRNRI---VEPALRLAKENP 230 (822)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---cHHHHHHHHhCc
Confidence 9999999999999999999999999999999 888887776543
No 75
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.61 E-value=1.7e-12 Score=108.13 Aligned_cols=166 Identities=13% Similarity=0.076 Sum_probs=120.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHH---------------------
Q 024712 67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLL--------------------- 125 (263)
Q Consensus 67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~--------------------- 125 (263)
....+.+++..|+++.|...++.+.+..|+++.++..++.++...|++++|.+.+.+..
T Consensus 156 ~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 156 EIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGL 235 (409)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 33346666666666666666666666666666666666666666666665555555444
Q ss_pred -----------------hcCC----CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHH--HHHHHHHHhcccH
Q 024712 126 -----------------EDNP----LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAW--RELAEIYVSLQMY 182 (263)
Q Consensus 126 -----------------~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~--~~la~~~~~~g~~ 182 (263)
...| +++..+..++..+...|++++|...++++++..|++.... ..........++.
T Consensus 236 l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~ 315 (409)
T TIGR00540 236 LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDN 315 (409)
T ss_pred HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCCh
Confidence 2234 3566677778888889999999999999999999887532 2223333445788
Q ss_pred HHHHHHHHHHHhhCCCCH--HHHHHHHHHHHhcCCCCcHHHHHHHHH--HhhccCCC
Q 024712 183 KQAAFCYEELILSQPTVP--LYHLAYADVLYTLGGVDNILLAKKYYA--STIDLTGG 235 (263)
Q Consensus 183 ~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~~~~A~~~~~--~al~~~~~ 235 (263)
+.+++.++++++..|+++ .....+|.+++..|+ +++|.++|+ .+++..|+
T Consensus 316 ~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~---~~~A~~~le~a~a~~~~p~ 369 (409)
T TIGR00540 316 EKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGE---FIEAADAFKNVAACKEQLD 369 (409)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHccc---HHHHHHHHHHhHHhhcCCC
Confidence 889999999999999999 888899999999999 999999999 57778786
No 76
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.61 E-value=9.6e-13 Score=106.08 Aligned_cols=136 Identities=18% Similarity=0.058 Sum_probs=103.2
Q ss_pred CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 024712 95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE 174 (263)
Q Consensus 95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 174 (263)
|.-..+++..+..++..|++++|...++..+...|+|+..+...+.++...++.++|.+.+++++..+|+.+..+.++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 56666777777777777888888888887777778877777777788888888888888888888888877777777888
Q ss_pred HHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccC
Q 024712 175 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT 233 (263)
Q Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~ 233 (263)
.++..|++.+|+..++..+..+|+++..|..||++|-.+|+ ..+|...+.+...++
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~---~~~a~~A~AE~~~~~ 438 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN---RAEALLARAEGYALA 438 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc---hHHHHHHHHHHHHhC
Confidence 88888888888888888777778877777777777777777 555555555555444
No 77
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.4e-13 Score=111.71 Aligned_cols=168 Identities=17% Similarity=0.090 Sum_probs=122.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh
Q 024712 70 VSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP 149 (263)
Q Consensus 70 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 149 (263)
+|..+...++++.|+.+|++++..+-. ..+.-+....++++.........+|.-..--...|..++..|+|.
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHH
Confidence 444555566777777777776554322 334444455555555555555556665555566688888888888
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHh
Q 024712 150 TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST 229 (263)
Q Consensus 150 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~a 229 (263)
.|+..|.+++..+|+++..+.+.|.||..+|.+..|+...+.+++++|++...|.+-|.++..+.+ |++|.+.|.++
T Consensus 376 ~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~---ydkAleay~ea 452 (539)
T KOG0548|consen 376 EAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKE---YDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888888888 88888888888
Q ss_pred hccCCCcchhHHHhHHHHHh
Q 024712 230 IDLTGGKNTKALFGICLVMF 249 (263)
Q Consensus 230 l~~~~~~~~~~~~~l~~~~~ 249 (263)
++.+|. +..+.-++..|..
T Consensus 453 le~dp~-~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 453 LELDPS-NAEAIDGYRRCVE 471 (539)
T ss_pred HhcCch-hHHHHHHHHHHHH
Confidence 888885 6666666666654
No 78
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.60 E-value=6.5e-13 Score=113.72 Aligned_cols=166 Identities=17% Similarity=0.092 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 024712 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK 143 (263)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 143 (263)
.......|...+-.|++++|.+++..++.+.|.++.++..+|.+|.+.|+.+++...+-.+-.++|.+.+.|..++....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 34455567777778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHhcCCCCc
Q 024712 144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV-----PLYHLAYADVLYTLGGVDN 218 (263)
Q Consensus 144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~ 218 (263)
.+|++.+|.-+|.++++.+|.+....+..+.+|.+.|+...|...|.+++...|.. .......+..+...++
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~--- 295 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE--- 295 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH---
Confidence 99999999999999999999999999999999999999999999999999999932 1233445777888888
Q ss_pred HHHHHHHHHHhhcc
Q 024712 219 ILLAKKYYASTIDL 232 (263)
Q Consensus 219 ~~~A~~~~~~al~~ 232 (263)
-+.|.+.++.++..
T Consensus 296 ~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 296 RERAAKALEGALSK 309 (895)
T ss_pred HHHHHHHHHHHHhh
Confidence 89999999998873
No 79
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.60 E-value=3.1e-13 Score=112.26 Aligned_cols=179 Identities=15% Similarity=0.123 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 024712 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK 143 (263)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 143 (263)
..+|..-+.....+++.++|+++++.+++.+|+.+..|.++|.++.++++.+.|...|...+..-|..+..|..++.+-.
T Consensus 651 eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 651 ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE 730 (913)
T ss_pred chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Confidence 44555566666778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------------------------
Q 024712 144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV------------------------ 199 (263)
Q Consensus 144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------------------------ 199 (263)
..|....|...++++.-.+|.+...|.....+-+..|..+.|...+.++++-.|++
T Consensus 731 k~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DAL 810 (913)
T KOG0495|consen 731 KDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDAL 810 (913)
T ss_pred HhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999998876654
Q ss_pred ------HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC-cchhHHHhHH
Q 024712 200 ------PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-KNTKALFGIC 245 (263)
Q Consensus 200 ------~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~-~~~~~~~~l~ 245 (263)
+.+...+|..++...+ +++|.++|.+++..+|+ .+.++|+.-.
T Consensus 811 kkce~dphVllaia~lfw~e~k---~~kar~Wf~Ravk~d~d~GD~wa~fykf 860 (913)
T KOG0495|consen 811 KKCEHDPHVLLAIAKLFWSEKK---IEKAREWFERAVKKDPDNGDAWAWFYKF 860 (913)
T ss_pred HhccCCchhHHHHHHHHHHHHH---HHHHHHHHHHHHccCCccchHHHHHHHH
Confidence 3466778888888888 99999999999999998 6677766433
No 80
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.59 E-value=9.3e-14 Score=97.03 Aligned_cols=108 Identities=14% Similarity=-0.020 Sum_probs=87.8
Q ss_pred HHHhC-CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHH
Q 024712 90 LQKQF-PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDA 168 (263)
Q Consensus 90 ~~~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 168 (263)
+.... ++.-+..+.+|..+...|++++|...|+-+...+|.+...|+++|.++..+|++.+|+..|.+++.++|+++..
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~ 105 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQA 105 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchH
Confidence 33444 55666777788888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhCC
Q 024712 169 WRELAEIYVSLQMYKQAAFCYEELILSQP 197 (263)
Q Consensus 169 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 197 (263)
++++|.|++..|+.+.|.+.|+.++....
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 88888888888888888888888887663
No 81
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.59 E-value=3.8e-14 Score=107.63 Aligned_cols=120 Identities=18% Similarity=0.000 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 024712 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK 143 (263)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 143 (263)
..-+..-|.-++..++|.+|+..|.++++..|.++..+.+++-+|.+.|.++.|++.++.++.++|....+|.++|.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 44455678888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHH
Q 024712 144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK 183 (263)
Q Consensus 144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 183 (263)
.+|++.+|+..|+++|+++|++...+..|..+-...++..
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999988888877776655
No 82
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.2e-13 Score=108.97 Aligned_cols=172 Identities=16% Similarity=0.061 Sum_probs=157.6
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH--------
Q 024712 61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP-------- 132 (263)
Q Consensus 61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-------- 132 (263)
|.....-...+.++.-.|++++|...--..+..++.+..+++..|.++...++.+.|+..|++++.++|++.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~ 245 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMM 245 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhh
Confidence 555566666788888899999999999999999999999999999999999999999999999999999874
Q ss_pred ----HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH----HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHH
Q 024712 133 ----VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH----DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL 204 (263)
Q Consensus 133 ----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 204 (263)
..+..-|.-.++.|++.+|.+.|..+|.++|++. ..+.+.+.+...+|+.++|+...+.+++++|....++.
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall 325 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALL 325 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHH
Confidence 3566778899999999999999999999999884 56788999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 205 AYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 205 ~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
..|.|+..+++ +++|++.|+++++...+
T Consensus 326 ~ra~c~l~le~---~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 326 RRANCHLALEK---WEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHhhccc
Confidence 99999999999 99999999999988654
No 83
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.59 E-value=4.9e-13 Score=110.79 Aligned_cols=203 Identities=18% Similarity=0.140 Sum_probs=176.0
Q ss_pred cCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHH
Q 024712 36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWA 115 (263)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~ 115 (263)
.+....-+.....++.+ .|+..+.+...|..+...|+-++|......++..++.+..+|..+|.++....+|+
T Consensus 20 ~kQYkkgLK~~~~iL~k-------~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~ 92 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKK-------FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYD 92 (700)
T ss_pred HHHHHhHHHHHHHHHHh-------CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHH
Confidence 33455666777777776 77888888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 024712 116 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS 195 (263)
Q Consensus 116 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 195 (263)
+|+.+|+.++...|+|..++..++.+..+.++++.....-.+.++..|..-..|+..+..+...|++..|....+...+.
T Consensus 93 eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 93 EAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888776654
Q ss_pred C---CCCH---------------------------------------HHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccC
Q 024712 196 Q---PTVP---------------------------------------LYHLAYADVLYTLGGVDNILLAKKYYASTIDLT 233 (263)
Q Consensus 196 ~---p~~~---------------------------------------~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~ 233 (263)
. |... ......|.+++.+++ +++|...|...+..+
T Consensus 173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~---lEeA~~~y~~Ll~rn 249 (700)
T KOG1156|consen 173 QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQ---LEEAVKVYRRLLERN 249 (700)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhh---HHhHHHHHHHHHhhC
Confidence 3 2211 123345677788888 999999999999999
Q ss_pred CCcchhHHHhHHHHHh
Q 024712 234 GGKNTKALFGICLVMF 249 (263)
Q Consensus 234 ~~~~~~~~~~l~~~~~ 249 (263)
|+ +...+.++..|.+
T Consensus 250 Pd-n~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 250 PD-NLDYYEGLEKALG 264 (700)
T ss_pred ch-hHHHHHHHHHHHH
Confidence 96 7777777777764
No 84
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.58 E-value=3.8e-13 Score=108.39 Aligned_cols=154 Identities=20% Similarity=0.152 Sum_probs=142.6
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024712 61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA 140 (263)
Q Consensus 61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 140 (263)
|......+..+...+..|++++|+..++.++...|+|+..+...+.++...++..+|.+.+++++..+|+.+....++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 45566777889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHH
Q 024712 141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL 220 (263)
Q Consensus 141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~ 220 (263)
.++..|++.+|+..++..+..+|+++..|..||..|..+|+..+|.. ..++.++..|+ ++
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~---~~ 442 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGR---LE 442 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCC---HH
Confidence 99999999999999999999999999999999999999999887754 45677888899 99
Q ss_pred HHHHHHHHhhccCC
Q 024712 221 LAKKYYASTIDLTG 234 (263)
Q Consensus 221 ~A~~~~~~al~~~~ 234 (263)
+|+..+.++.+...
T Consensus 443 ~A~~~l~~A~~~~~ 456 (484)
T COG4783 443 QAIIFLMRASQQVK 456 (484)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999887763
No 85
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.57 E-value=1.7e-13 Score=111.43 Aligned_cols=112 Identities=17% Similarity=0.105 Sum_probs=79.2
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 024712 102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM 181 (263)
Q Consensus 102 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 181 (263)
...|..++..|+|++|+..|++++..+|+++.++..+|.++...|++++|+..+++++.++|.++.+++.+|.+++..|+
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 34566666677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 024712 182 YKQAAFCYEELILSQPTVPLYHLAYADVLYTL 213 (263)
Q Consensus 182 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 213 (263)
+++|+..|++++.++|+++.+...++.|...+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 77777777777777777777666666665444
No 86
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=8.8e-13 Score=97.82 Aligned_cols=152 Identities=16% Similarity=0.078 Sum_probs=136.1
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024712 61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA 140 (263)
Q Consensus 61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 140 (263)
|....+....|+.+-..|.+++|+++|+..++.+|.+..++...-.+...+|+.-+|++.+.+.++..+.+.++|..++.
T Consensus 83 p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLae 162 (289)
T KOG3060|consen 83 PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAE 162 (289)
T ss_pred CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 56666666778888888999999999999999999998888887888888899999999999999999999999999999
Q ss_pred HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc---cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 024712 141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ---MYKQAAFCYEELILSQPTVPLYHLAYADVLYT 212 (263)
Q Consensus 141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 212 (263)
+|...|+|++|.-++++++-+.|.++-.+..+|.+++-+| ++.-|.++|.++++++|.+...++.+..+-..
T Consensus 163 iY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~ 237 (289)
T KOG3060|consen 163 IYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSA 237 (289)
T ss_pred HHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998876 56789999999999999888777766544443
No 87
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.55 E-value=6.5e-12 Score=96.63 Aligned_cols=164 Identities=13% Similarity=0.006 Sum_probs=138.0
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHH---HHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH---HHH
Q 024712 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVG---RLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLH 135 (263)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~---~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~ 135 (263)
..+..+...|..++..|++++|+..|+.++..+|.++.+. +.+|.+++..+++++|+..+++.++.+|+++ .++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 3556677789999999999999999999999999876554 8899999999999999999999999998875 578
Q ss_pred HHHHHHHHHcC---------------C---hhHHHHHHHHHHHhcCCCHHH-----------------HHHHHHHHHhcc
Q 024712 136 KRRVAIAKAQG---------------N---FPTAIEWLNKYLETFMADHDA-----------------WRELAEIYVSLQ 180 (263)
Q Consensus 136 ~~l~~~~~~~g---------------~---~~~A~~~~~~~l~~~p~~~~~-----------------~~~la~~~~~~g 180 (263)
+.+|.++...+ + ..+|+..|+..++..|++.-+ -+.+|..|.+.|
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~ 189 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRG 189 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88887764443 1 346889999999999998421 235788899999
Q ss_pred cHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 024712 181 MYKQAAFCYEELILSQPTV---PLYHLAYADVLYTLGGVDNILLAKKYYAS 228 (263)
Q Consensus 181 ~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~~~~A~~~~~~ 228 (263)
.|..|+.-++.+++..|+. ..++..++.+|..+|. .++|.+....
T Consensus 190 ~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~---~~~a~~~~~~ 237 (243)
T PRK10866 190 AYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQL---NAQADKVAKI 237 (243)
T ss_pred chHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC---hHHHHHHHHH
Confidence 9999999999999998876 5578899999999999 8888776543
No 88
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.55 E-value=8e-12 Score=104.10 Aligned_cols=173 Identities=11% Similarity=-0.057 Sum_probs=126.4
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHH
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK-RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR 138 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 138 (263)
.|+....+...|.++...|+++.|..++.++.+..|++. .+....+.++...|+++.|...++++.+..|+++.++..+
T Consensus 114 ~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll 193 (409)
T TIGR00540 114 AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLA 193 (409)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 455555666778899999999999999999999999875 5666789999999999999999999999999999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcC------------------------------------------CCHHHHHHHHHHH
Q 024712 139 VAIAKAQGNFPTAIEWLNKYLETFM------------------------------------------ADHDAWRELAEIY 176 (263)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~l~~~p------------------------------------------~~~~~~~~la~~~ 176 (263)
+.++...|++++|...+.+..+..+ +++.++..+|..+
T Consensus 194 ~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l 273 (409)
T TIGR00540 194 EEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHL 273 (409)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHH
Confidence 9999999999988888877665422 2444555555666
Q ss_pred HhcccHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 177 VSLQMYKQAAFCYEELILSQPTVPLYH--LAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 177 ~~~g~~~~A~~~~~~al~~~p~~~~~~--~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
...|++++|...++++++..|++.... ..........++ .+++.+.++++++..|+
T Consensus 274 ~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~---~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 274 IDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPED---NEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCC---hHHHHHHHHHHHHhCCC
Confidence 666666666666666666666554321 111112222344 55666666666666664
No 89
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.55 E-value=3.1e-12 Score=96.16 Aligned_cols=159 Identities=20% Similarity=0.174 Sum_probs=127.1
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH---HHH
Q 024712 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLH 135 (263)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~ 135 (263)
.....+...|...+..|++.+|+..|+.+...+|.+ +.+.+.+|.+++..|++++|+..+++.+...|+++ .++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 345677889999999999999999999999999864 56788999999999999999999999999999875 577
Q ss_pred HHHHHHHHHcC-----------ChhHHHHHHHHHHHhcCCCHHH-----------------HHHHHHHHHhcccHHHHHH
Q 024712 136 KRRVAIAKAQG-----------NFPTAIEWLNKYLETFMADHDA-----------------WRELAEIYVSLQMYKQAAF 187 (263)
Q Consensus 136 ~~l~~~~~~~g-----------~~~~A~~~~~~~l~~~p~~~~~-----------------~~~la~~~~~~g~~~~A~~ 187 (263)
+.+|.+++... ...+|+..|+..+...|++..+ -+.+|..|+..|.|..|+.
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~ 162 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAII 162 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 88888876543 3458999999999999998322 2357899999999999999
Q ss_pred HHHHHHhhCCCCH---HHHHHHHHHHHhcCCCCcHHHHH
Q 024712 188 CYEELILSQPTVP---LYHLAYADVLYTLGGVDNILLAK 223 (263)
Q Consensus 188 ~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~~~~A~ 223 (263)
.++.+++..|+.+ .++..++.++..+|. .+.|.
T Consensus 163 r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~---~~~a~ 198 (203)
T PF13525_consen 163 RFQYVIENYPDTPAAEEALARLAEAYYKLGL---KQAAD 198 (203)
T ss_dssp HHHHHHHHSTTSHHHHHHHHHHHHHHHHTT----HHHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhCC---hHHHH
Confidence 9999999999885 478889999999998 66443
No 90
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.55 E-value=3.8e-13 Score=116.17 Aligned_cols=192 Identities=15% Similarity=0.057 Sum_probs=174.2
Q ss_pred cccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH--HH
Q 024712 57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP--VL 134 (263)
Q Consensus 57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~ 134 (263)
..+++....++..+|..|.+..+...|.++|.++.+.+|.+..+....+..|....+++.|....-+.-+..|-.. ..
T Consensus 485 lrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~n 564 (1238)
T KOG1127|consen 485 LRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKEN 564 (1238)
T ss_pred HhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhh
Confidence 4558888889999999999999999999999999999999999999999999999999999999777777666543 46
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 024712 135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214 (263)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 214 (263)
|..+|..|...++..+|+..|+.+++.+|.+...|..+|.+|...|++..|++.|.++..++|.+....+..+.+....|
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~G 644 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNG 644 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhh
Confidence 77799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhhch
Q 024712 215 GVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFVCH 252 (263)
Q Consensus 215 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~~~ 252 (263)
. |.+|...+...+..... +..+..|++.|..-|.
T Consensus 645 k---Ykeald~l~~ii~~~s~-e~~~q~gLaE~~ir~a 678 (1238)
T KOG1127|consen 645 K---YKEALDALGLIIYAFSL-ERTGQNGLAESVIRDA 678 (1238)
T ss_pred h---HHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHH
Confidence 9 99999999999987664 7788888888766543
No 91
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=4.8e-12 Score=100.11 Aligned_cols=185 Identities=14% Similarity=0.048 Sum_probs=159.8
Q ss_pred hHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024712 63 VWTLYEQVSIAAMDCQCL--DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA 140 (263)
Q Consensus 63 ~~~~~~~la~~~~~~~~~--~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 140 (263)
.|......+.+.+-.++. ..+..++-......|++......+|.+++..|++++|+..|+++...+|.+....-.+|.
T Consensus 195 dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~ 274 (564)
T KOG1174|consen 195 DWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAV 274 (564)
T ss_pred cHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHH
Confidence 444333344444444544 444555566666789999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHH
Q 024712 141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL 220 (263)
Q Consensus 141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~ 220 (263)
++...|+++.-.......+........-|+.-+...+..+++..|+.+-++++..+|++..++...|.++...|+ .+
T Consensus 275 LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R---~~ 351 (564)
T KOG1174|consen 275 LLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALER---HT 351 (564)
T ss_pred HHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccc---hH
Confidence 999999999998888889888878888899999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHhhccCCCcchhHHHhHHHHHhhc
Q 024712 221 LAKKYYASTIDLTGGKNTKALFGICLVMFVC 251 (263)
Q Consensus 221 ~A~~~~~~al~~~~~~~~~~~~~l~~~~~~~ 251 (263)
+|+-.|+.+..+.|. ..+.+-||+.|+...
T Consensus 352 ~A~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 352 QAVIAFRTAQMLAPY-RLEIYRGLFHSYLAQ 381 (564)
T ss_pred HHHHHHHHHHhcchh-hHHHHHHHHHHHHhh
Confidence 999999999999995 889999999998873
No 92
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.53 E-value=5.4e-13 Score=112.52 Aligned_cols=136 Identities=26% Similarity=0.286 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 024712 66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ 145 (263)
Q Consensus 66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 145 (263)
+|...+..+...+..++|..++.++...+|..+..++..|.++...|++.+|.+.|..++.++|+++.+...+|.++...
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~ 731 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLEL 731 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh
Confidence 34456666677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CChhHHHH--HHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH
Q 024712 146 GNFPTAIE--WLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL 201 (263)
Q Consensus 146 g~~~~A~~--~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 201 (263)
|+..-|.. .+..+++++|.++++|+.+|.++..+|+.++|.++|+.++++.+.+|.
T Consensus 732 G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 732 GSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred CCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 77666666 777777777777777777777777777777777777777777766653
No 93
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.53 E-value=2.5e-12 Score=107.23 Aligned_cols=174 Identities=16% Similarity=0.143 Sum_probs=145.8
Q ss_pred cccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Q 024712 55 KRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP--------ESKRVGRLEGILLEAKGLWAEAEKAYSSLLE 126 (263)
Q Consensus 55 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 126 (263)
......|....++.+++..|...|++++|..++++++++.. .-+..+..++.++..++++++|+.+++++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 34556777888999999999999999999999999988642 2345567788899999999999999999988
Q ss_pred cC-----CCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHhcccHHHHHHHHH
Q 024712 127 DN-----PLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETF--------MADHDAWRELAEIYVSLQMYKQAAFCYE 190 (263)
Q Consensus 127 ~~-----p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~ 190 (263)
+. +.+ ...+.++|.+|...|++.+|...+++++.+. +.....+..+|..|...+.+.+|...|.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 52 233 4578999999999999999999999999864 2334567889999999999999999999
Q ss_pred HHHhh-------CCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhc
Q 024712 191 ELILS-------QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID 231 (263)
Q Consensus 191 ~al~~-------~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~ 231 (263)
+++.+ .|+....+.+||.+|..+|+ ++.|+++-.+++.
T Consensus 434 ~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~---~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 434 EAKDIMKLCGPDHPDVTYTYLNLAALYRAQGN---YEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHccc---HHHHHHHHHHHHH
Confidence 88865 23445679999999999999 9999999999884
No 94
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.52 E-value=7.6e-13 Score=107.71 Aligned_cols=113 Identities=15% Similarity=-0.002 Sum_probs=106.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 024712 67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG 146 (263)
Q Consensus 67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 146 (263)
+...|..++..|++++|+..|.+++...|+++.++..+|.++...|++++|+..+++++.++|.++.+++.+|.+++..|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 44568888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 024712 147 NFPTAIEWLNKYLETFMADHDAWRELAEIYVSL 179 (263)
Q Consensus 147 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 179 (263)
++++|+..|+++++++|+++.+...++.+....
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999988888776555
No 95
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.52 E-value=8.4e-12 Score=105.48 Aligned_cols=192 Identities=17% Similarity=0.067 Sum_probs=160.0
Q ss_pred cccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHH
Q 024712 55 KRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP-ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV 133 (263)
Q Consensus 55 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 133 (263)
...+++|.++.+.+.++..+...++.+.|....+++++.++ +++.+|..++.++...+++.+|+.+.+.++...|+|..
T Consensus 469 ~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~ 548 (799)
T KOG4162|consen 469 EAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV 548 (799)
T ss_pred HHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh
Confidence 35666888889999999999999999999999999999955 78889999999999999999999888888776555211
Q ss_pred --------------------------------------------------------------------------------
Q 024712 134 -------------------------------------------------------------------------------- 133 (263)
Q Consensus 134 -------------------------------------------------------------------------------- 133 (263)
T Consensus 549 l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 549 LMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence
Q ss_pred -----------------------HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHH
Q 024712 134 -----------------------LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYE 190 (263)
Q Consensus 134 -----------------------~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 190 (263)
.|...+..+...++.++|..++.++-.++|..+..|+..|.++...|+..+|...|.
T Consensus 629 se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~ 708 (799)
T KOG4162|consen 629 SELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFL 708 (799)
T ss_pred cccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 222344555556667777778888888888888889999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHH--HHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 191 ELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK--YYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 191 ~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~--~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
.++.++|+++.+...+|.++...|+ ..-|.. .+..+++++|. +..+|++++.+..+
T Consensus 709 ~Al~ldP~hv~s~~Ala~~lle~G~---~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~ 766 (799)
T KOG4162|consen 709 VALALDPDHVPSMTALAELLLELGS---PRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKK 766 (799)
T ss_pred HHHhcCCCCcHHHHHHHHHHHHhCC---cchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHH
Confidence 9999999999999999999999998 666666 89999999996 88889888887766
No 96
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.50 E-value=3e-12 Score=106.21 Aligned_cols=165 Identities=15% Similarity=0.153 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 024712 66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ 145 (263)
Q Consensus 66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 145 (263)
.++..+.-.+..++|...++..+.++..+|.+++...+.|..+..+|+-++|....+.++..++.+..+|..+|.++...
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 44556667789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 024712 146 GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKY 225 (263)
Q Consensus 146 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~ 225 (263)
.+|++|+.+|..|+.+.|++..+|..++.+..+.++++.....-.+.++..|.....|..++..+...|+ +..|...
T Consensus 89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~---y~~A~~i 165 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE---YKMALEI 165 (700)
T ss_pred hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 9999888
Q ss_pred HHHhhccC
Q 024712 226 YASTIDLT 233 (263)
Q Consensus 226 ~~~al~~~ 233 (263)
.+...+..
T Consensus 166 l~ef~~t~ 173 (700)
T KOG1156|consen 166 LEEFEKTQ 173 (700)
T ss_pred HHHHHHhh
Confidence 77766554
No 97
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=3e-12 Score=104.21 Aligned_cols=149 Identities=19% Similarity=0.149 Sum_probs=129.3
Q ss_pred cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 024712 77 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156 (263)
Q Consensus 77 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (263)
....+++++......-.+|.-..-....|..++..|+|..|+..|.+++..+|++...+.+.+.+|..+|.+..|+...+
T Consensus 337 lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~ 416 (539)
T KOG0548|consen 337 LKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAK 416 (539)
T ss_pred HHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34555666666666667777777777889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 024712 157 KYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAS 228 (263)
Q Consensus 157 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~ 228 (263)
++++++|+....|+.-|.++..+.+|++|.+.|+++++.+|++..+...+..|...... .....+.+++
T Consensus 417 ~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~---~~~~ee~~~r 485 (539)
T KOG0548|consen 417 KCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRG---DETPEETKRR 485 (539)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhc---CCCHHHHHHh
Confidence 99999999999999999999999999999999999999999999998888888886433 2333444444
No 98
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.46 E-value=1.8e-12 Score=108.83 Aligned_cols=170 Identities=15% Similarity=0.075 Sum_probs=102.8
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHH--
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR-- 137 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-- 137 (263)
-|..|..-..++..++..|-..+|+.++++.- .|-....+|...|+..+|..+..+-++ .|.++..|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LG 464 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLG 464 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhh
Confidence 44566666666666666666666666665433 233344455555555555555554444 2222222222
Q ss_pred --------------------------HHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHH
Q 024712 138 --------------------------RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEE 191 (263)
Q Consensus 138 --------------------------l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 191 (263)
+|......+++.++..+++..++++|-....|+.+|.+..+.++++.|..+|..
T Consensus 465 Dv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 222233346677777777777777777777777777777777777777777777
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHH
Q 024712 192 LILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALF 242 (263)
Q Consensus 192 al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~ 242 (263)
++.++|++..+|.+++.+|...|+ ..+|...+.++++-+-+ ++..|-
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~---k~ra~~~l~EAlKcn~~-~w~iWE 591 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKK---KKRAFRKLKEALKCNYQ-HWQIWE 591 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhh---hHHHHHHHHHHhhcCCC-CCeeee
Confidence 777777777777777777777777 77777777777766643 444443
No 99
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=7.1e-12 Score=95.96 Aligned_cols=119 Identities=16% Similarity=0.019 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc---cHHHHHHHHH
Q 024712 114 WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ---MYKQAAFCYE 190 (263)
Q Consensus 114 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~ 190 (263)
.+.-+.-++.-+..+|++...|..+|.+|+.+|++..|...|.+++++.|++++.+..+|.++..+. ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 3445555566666677777777777777777777777777777777777777777666666655432 3446666777
Q ss_pred HHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 191 ELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 191 ~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
+++..+|++..+...||..++..|+ +.+|...++..++..|.
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~---~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGD---YAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHccc---HHHHHHHHHHHHhcCCC
Confidence 7777777777777777777777777 77777777777666664
No 100
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.45 E-value=5.5e-12 Score=86.56 Aligned_cols=99 Identities=20% Similarity=0.205 Sum_probs=43.9
Q ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHH
Q 024712 101 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAE 174 (263)
Q Consensus 101 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~ 174 (263)
++.+|..+...|++++|+..|.+++..+|++ ..+++.+|.++...|++++|+..+++++..+|++ +.++..+|.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 3344444444444444444444444444333 2334444444444444444444444444444432 333444444
Q ss_pred HHHhcccHHHHHHHHHHHHhhCCCC
Q 024712 175 IYVSLQMYKQAAFCYEELILSQPTV 199 (263)
Q Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~ 199 (263)
++...|++++|+.++.+++...|++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCC
Confidence 4444444444444444444444444
No 101
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.45 E-value=6e-11 Score=100.04 Aligned_cols=66 Identities=21% Similarity=0.136 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 167 DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 167 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
++++.+|..|...|++++|+.+++++|..+|+.+..+...|.++-..|+ +.+|...+..+-++++.
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~---~~~Aa~~~~~Ar~LD~~ 260 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD---LKEAAEAMDEARELDLA 260 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCChh
Confidence 4567889999999999999999999999999999999999999999999 99999999999988774
No 102
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.45 E-value=1.4e-11 Score=87.59 Aligned_cols=116 Identities=22% Similarity=0.240 Sum_probs=68.8
Q ss_pred HcCChHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChh
Q 024712 76 DCQCLDVAKDCIKVLQKQFPES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFP 149 (263)
Q Consensus 76 ~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~ 149 (263)
..++...+...++.+...+|++ ..+.+.+|.+++..|++++|+..|++++...|+. ..+...++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666666666666655 3445556666666666666666666666655443 234555666666666666
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 024712 150 TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEEL 192 (263)
Q Consensus 150 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 192 (263)
+|+..++. +...+..+.++..+|.++...|++++|+..|+++
T Consensus 103 ~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 66666644 2233333455556666666666666666666654
No 103
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.44 E-value=1.1e-11 Score=97.68 Aligned_cols=199 Identities=15% Similarity=0.053 Sum_probs=147.4
Q ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHH
Q 024712 23 GAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGR 102 (263)
Q Consensus 23 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 102 (263)
.|+..+..+.... .+.+.++......+.. ...+.+..+....|.++...|++++|++.+... ++.+...
T Consensus 67 ~av~~la~y~~~~-~~~e~~l~~l~~~~~~-----~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~a 135 (290)
T PF04733_consen 67 QAVRLLAEYLSSP-SDKESALEELKELLAD-----QAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLA 135 (290)
T ss_dssp HHHHHHHHHHCTS-TTHHCHHHHHHHCCCT-----S---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHH
T ss_pred HHHHHHHHHHhCc-cchHHHHHHHHHHHHh-----ccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHH
Confidence 4555554444432 2344444444443333 112234445556677788889999999998754 5677888
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 024712 103 LEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG--NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180 (263)
Q Consensus 103 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 180 (263)
....++..+++++.|.+.++++.+.+.+..-+....+.+.+..| .+.+|...|++..+..|.++..+..++.+...+|
T Consensus 136 l~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~ 215 (290)
T PF04733_consen 136 LAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLG 215 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC
Confidence 88899999999999999999999888776655555555666665 5899999999998888899999999999999999
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcH-HHHHHHHHHhhccCCC
Q 024712 181 MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNI-LLAKKYYASTIDLTGG 235 (263)
Q Consensus 181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~-~~A~~~~~~al~~~~~ 235 (263)
+|++|...+++++..+|+++.+..+++.+....|+ . +.+.+++.+....+|.
T Consensus 216 ~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk---~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 216 HYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK---PTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp -HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT----TCHHHHHHHHHCHHHTTT
T ss_pred CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC---ChhHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999998 6 5667777777777775
No 104
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=2.6e-12 Score=101.51 Aligned_cols=190 Identities=17% Similarity=0.070 Sum_probs=151.3
Q ss_pred cccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHH---------------HhC---CCcHHHHHHHHHHHHHcCcHHHHH
Q 024712 57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQ---------------KQF---PESKRVGRLEGILLEAKGLWAEAE 118 (263)
Q Consensus 57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~---------------~~~---p~~~~~~~~~a~~~~~~~~~~~A~ 118 (263)
..+.|.........+.++...++..+|...++... ..+ |....+....+.++...|++++|.
T Consensus 110 ~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~ 189 (486)
T KOG0550|consen 110 VRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQ 189 (486)
T ss_pred eecCCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHH
Confidence 33445444455555555555555555554443211 111 222345566788888899999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH------------HHHHHHHHHHHhcccHHHHH
Q 024712 119 KAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH------------DAWRELAEIYVSLQMYKQAA 186 (263)
Q Consensus 119 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~------------~~~~~la~~~~~~g~~~~A~ 186 (263)
..--.++.+++.+.++++..|.+++..++.+.|+..|++++.++|+.. ..|..-|+-.++.|+|..|.
T Consensus 190 ~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~ 269 (486)
T KOG0550|consen 190 SEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAY 269 (486)
T ss_pred HHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHH
Confidence 999999999999999999999999999999999999999999999874 35667899999999999999
Q ss_pred HHHHHHHhhCCCCH----HHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 187 FCYEELILSQPTVP----LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 187 ~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
++|..+|.++|++. ..+.+.|.+...+|+ ..+|+.....++.++|. .++++.-.+.|+..
T Consensus 270 E~Yteal~idP~n~~~naklY~nra~v~~rLgr---l~eaisdc~~Al~iD~s-yikall~ra~c~l~ 333 (486)
T KOG0550|consen 270 ECYTEALNIDPSNKKTNAKLYGNRALVNIRLGR---LREAISDCNEALKIDSS-YIKALLRRANCHLA 333 (486)
T ss_pred HHHHHhhcCCccccchhHHHHHHhHhhhcccCC---chhhhhhhhhhhhcCHH-HHHHHHHHHHHHHH
Confidence 99999999999873 468889999999999 99999999999999995 88888877777655
No 105
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.42 E-value=1.4e-11 Score=84.52 Aligned_cols=106 Identities=17% Similarity=0.202 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC---HHHHHH
Q 024712 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKR 137 (263)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~ 137 (263)
..++..+|..+...|++++|+..|..++..+|++ +.+++.+|.++...|++++|+..+++++...|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3567889999999999999999999999999876 5688899999999999999999999999998875 568999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhcCCCHHHH
Q 024712 138 RVAIAKAQGNFPTAIEWLNKYLETFMADHDAW 169 (263)
Q Consensus 138 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 169 (263)
+|.++...|++++|+..+++++...|++..+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 99999999999999999999999999987654
No 106
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.41 E-value=7.1e-12 Score=81.89 Aligned_cols=97 Identities=24% Similarity=0.266 Sum_probs=61.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 024712 135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214 (263)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 214 (263)
+..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.++++++...|.++.++..+|.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCcHHHHHHHHHHhhccCC
Q 024712 215 GVDNILLAKKYYASTIDLTG 234 (263)
Q Consensus 215 ~~~~~~~A~~~~~~al~~~~ 234 (263)
+ +++|...+.+++..+|
T Consensus 83 ~---~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 K---YEEALEAYEKALELDP 99 (100)
T ss_pred h---HHHHHHHHHHHHccCC
Confidence 6 6666666666665554
No 107
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2.1e-11 Score=93.43 Aligned_cols=123 Identities=20% Similarity=0.041 Sum_probs=113.4
Q ss_pred ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---ChhHHHHHH
Q 024712 79 CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG---NFPTAIEWL 155 (263)
Q Consensus 79 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~ 155 (263)
+.+..+.-++.-+..+|++.+-|..+|.+|...|+++.|...|.+++.+.|++++.+..+|.+++.+. ...++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 35666777888899999999999999999999999999999999999999999999999999988764 467899999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH
Q 024712 156 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL 201 (263)
Q Consensus 156 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 201 (263)
++++..+|.+..+.+.||..++..|+|.+|+..++..+...|.+..
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999999999999999999999886643
No 108
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.40 E-value=1.7e-12 Score=80.02 Aligned_cols=66 Identities=21% Similarity=0.288 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHhhccCC
Q 024712 166 HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG-GVDNILLAKKYYASTIDLTG 234 (263)
Q Consensus 166 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~~~~A~~~~~~al~~~~ 234 (263)
+..|..+|.+++..|++++|+.+|+++++.+|+++.++.++|.++...| + +++|+..|+++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~---~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKD---YEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTH---HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCcc---HHHHHHHHHHHHHcCc
Confidence 4455555555555555555555555555555555555555555555555 5 5555555555555554
No 109
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.40 E-value=9.5e-12 Score=81.29 Aligned_cols=98 Identities=26% Similarity=0.214 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 024712 100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL 179 (263)
Q Consensus 100 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 179 (263)
+++.+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 45667777788888888888888888888877777788888888888888888888888888888877888888888888
Q ss_pred ccHHHHHHHHHHHHhhCC
Q 024712 180 QMYKQAAFCYEELILSQP 197 (263)
Q Consensus 180 g~~~~A~~~~~~al~~~p 197 (263)
|++++|...+.+++...|
T Consensus 82 ~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 82 GKYEEALEAYEKALELDP 99 (100)
T ss_pred HhHHHHHHHHHHHHccCC
Confidence 888888888888877766
No 110
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.40 E-value=3.2e-11 Score=88.41 Aligned_cols=88 Identities=22% Similarity=0.192 Sum_probs=53.4
Q ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHH
Q 024712 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELA 173 (263)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 173 (263)
...+++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+++++...|.+...+..+|
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 34455566666666666666666666666554432 245666666666666666666666666666666666666666
Q ss_pred HHHHhcccHHH
Q 024712 174 EIYVSLQMYKQ 184 (263)
Q Consensus 174 ~~~~~~g~~~~ 184 (263)
.++...|+...
T Consensus 114 ~~~~~~g~~~~ 124 (172)
T PRK02603 114 VIYHKRGEKAE 124 (172)
T ss_pred HHHHHcCChHh
Confidence 66666655433
No 111
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.40 E-value=6.6e-11 Score=84.18 Aligned_cols=118 Identities=23% Similarity=0.182 Sum_probs=103.1
Q ss_pred HHcCcHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcccH
Q 024712 109 EAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMY 182 (263)
Q Consensus 109 ~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~ 182 (263)
...++...+...++.+....|+. ..+...+|.+++..|++++|+..|+.++...|+. ..+...+|.++...|++
T Consensus 22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 35789999999999999999998 3577889999999999999999999999987665 45778899999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 024712 183 KQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI 230 (263)
Q Consensus 183 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al 230 (263)
++|+..++. +...+..+.++..+|+++...|+ +++|+..|++++
T Consensus 102 d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~---~~~A~~~y~~Al 145 (145)
T PF09976_consen 102 DEALATLQQ-IPDEAFKALAAELLGDIYLAQGD---YDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCC---HHHHHHHHHHhC
Confidence 999999966 34445557788899999999999 999999999875
No 112
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.38 E-value=3.8e-12 Score=78.45 Aligned_cols=67 Identities=24% Similarity=0.312 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhCC
Q 024712 131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ-MYKQAAFCYEELILSQP 197 (263)
Q Consensus 131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 197 (263)
++..|..+|.+++..|++++|+..|.++++.+|+++.+|+.+|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34566667777777777777777777777777777777777777777776 57777777777776665
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.38 E-value=2.6e-11 Score=102.11 Aligned_cols=164 Identities=21% Similarity=0.140 Sum_probs=135.8
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 024712 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI 141 (263)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 141 (263)
..+..|..+|.+..+..-|++|.++.+.. +..+...+|......++|+++...++..++++|-....|+.+|.+
T Consensus 455 ~d~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ 528 (777)
T KOG1128|consen 455 PDPRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCA 528 (777)
T ss_pred CcchhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHH
Confidence 33444444444443333333333333322 333555556666667999999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHH
Q 024712 142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL 221 (263)
Q Consensus 142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~ 221 (263)
..+.+++..|...|..++..+|++..+|.+++..|...++-.+|...++++++.+-.++.+|.+...+....|. +++
T Consensus 529 ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge---~ed 605 (777)
T KOG1128|consen 529 ALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGE---FED 605 (777)
T ss_pred HHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhccc---HHH
Confidence 99999999999999999999999999999999999999999999999999999998889999999999999999 999
Q ss_pred HHHHHHHhhccCC
Q 024712 222 AKKYYASTIDLTG 234 (263)
Q Consensus 222 A~~~~~~al~~~~ 234 (263)
|++.|.+.+.+..
T Consensus 606 a~~A~~rll~~~~ 618 (777)
T KOG1128|consen 606 AIKAYHRLLDLRK 618 (777)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999887743
No 114
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.38 E-value=2.8e-11 Score=88.39 Aligned_cols=102 Identities=17% Similarity=0.119 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024712 134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL 210 (263)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 210 (263)
.+..+|.++...|++++|+..|++++.+.|++ +.++..+|.++...|++++|+.++++++.++|.....+..+|.++
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~ 116 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 33444444444444444444444444443332 224444444444445555555555554444444444444444444
Q ss_pred H-------hcCCC----CcHHHHHHHHHHhhccCCC
Q 024712 211 Y-------TLGGV----DNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 211 ~-------~~g~~----~~~~~A~~~~~~al~~~~~ 235 (263)
. ..|+. ..+++|..+|++++..+|+
T Consensus 117 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 117 HYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 4 33330 0033556666666666664
No 115
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.38 E-value=6.6e-11 Score=104.43 Aligned_cols=169 Identities=12% Similarity=0.091 Sum_probs=139.0
Q ss_pred ccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH----------------
Q 024712 35 KVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK---------------- 98 (263)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~---------------- 98 (263)
...+.++++......+.. .|+....+..+|..+++.+++..+.-+ .++...+.+.
T Consensus 43 ~~~~~deai~i~~~~l~~-------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~ 113 (906)
T PRK14720 43 SENLTDEAKDICEEHLKE-------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYG 113 (906)
T ss_pred hcCCHHHHHHHHHHHHHh-------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhh
Confidence 445677777777766655 788888888888888888887777655 6666655554
Q ss_pred ---HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc-------------
Q 024712 99 ---RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF------------- 162 (263)
Q Consensus 99 ---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~------------- 162 (263)
.+++.+|.+|..+|++++|...|++++..+|+++.+++++|..+... +.++|+.++.+++...
T Consensus 114 ~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W 192 (906)
T PRK14720 114 ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIW 192 (906)
T ss_pred hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 89999999999999999999999999999999999999999999999 9999999998887642
Q ss_pred -------CCCHHH--------------------HHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 024712 163 -------MADHDA--------------------WRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL 213 (263)
Q Consensus 163 -------p~~~~~--------------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 213 (263)
|.+.+. +.-+-.+|...++|++++.+++.+++.+|.|..+...++.||...
T Consensus 193 ~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~k 270 (906)
T PRK14720 193 SKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEK 270 (906)
T ss_pred HHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHH
Confidence 443332 122337788889999999999999999999999999999999843
No 116
>PRK11906 transcriptional regulator; Provisional
Probab=99.37 E-value=1.6e-10 Score=93.84 Aligned_cols=162 Identities=9% Similarity=-0.081 Sum_probs=135.7
Q ss_pred HHHHHHHHHcC---ChHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHc---------CcHHHHHHHHHHHHhcCCCCH
Q 024712 68 EQVSIAAMDCQ---CLDVAKDCIKVLQ---KQFPESKRVGRLEGILLEAK---------GLWAEAEKAYSSLLEDNPLDP 132 (263)
Q Consensus 68 ~~la~~~~~~~---~~~~A~~~~~~~~---~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~~~~~~p~~~ 132 (263)
...|...+..+ ..+.|+.+|.+++ ..+|+.+.++..++.+++.. .+..+|....+++++++|.++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 44566555544 4567899999999 89999999999999988765 345688999999999999999
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHH-HHHH-HH
Q 024712 133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL-AYAD-VL 210 (263)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~la~-~~ 210 (263)
.++..+|.+....++++.|+..|++++.++|+.+.+|+..|.+.+..|+.++|+..++++++++|.-..+-. .+.. .|
T Consensus 339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~ 418 (458)
T PRK11906 339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMY 418 (458)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998765433 3333 44
Q ss_pred HhcCCCCcHHHHHHHHHHhhccC
Q 024712 211 YTLGGVDNILLAKKYYASTIDLT 233 (263)
Q Consensus 211 ~~~g~~~~~~~A~~~~~~al~~~ 233 (263)
+. .. .++|+..|-+-.+..
T Consensus 419 ~~-~~---~~~~~~~~~~~~~~~ 437 (458)
T PRK11906 419 VP-NP---LKNNIKLYYKETESE 437 (458)
T ss_pred cC-Cc---hhhhHHHHhhccccc
Confidence 44 44 789999887755443
No 117
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.37 E-value=1.9e-10 Score=97.54 Aligned_cols=140 Identities=13% Similarity=0.057 Sum_probs=109.7
Q ss_pred HhCCCcHHHH--HHHHHHHHHcC---cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--------ChhHHHHHHHHH
Q 024712 92 KQFPESKRVG--RLEGILLEAKG---LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG--------NFPTAIEWLNKY 158 (263)
Q Consensus 92 ~~~p~~~~~~--~~~a~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~ 158 (263)
...|.++.++ +..|.-+...+ +...|+.+|+++++.+|++..++..++.++.... +...+.....++
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 4445665554 45666666554 3778999999999999999888888777765542 233455555565
Q ss_pred HHh--cCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 159 LET--FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 159 l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
+.. +|.++.++..+|......|++++|...+++++.++| +..++..+|.++...|+ +++|...|++++.++|.
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~---~~eA~~~~~~A~~L~P~ 485 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGD---NRLAADAYSTAFNLRPG 485 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCC
Confidence 553 777788888889888889999999999999999999 47889999999999999 99999999999999997
No 118
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.36 E-value=1e-10 Score=99.22 Aligned_cols=141 Identities=14% Similarity=0.072 Sum_probs=115.6
Q ss_pred CcchHHHHH--HHHHHHHHcC---ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC--------cHHHHHHHHHHHHh
Q 024712 60 GPDVWTLYE--QVSIAAMDCQ---CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG--------LWAEAEKAYSSLLE 126 (263)
Q Consensus 60 ~~~~~~~~~--~la~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~--------~~~~A~~~~~~~~~ 126 (263)
.|.+..+|. ..|..++..+ ++..|+.+|+++++.+|+++.++..++.++.... +...+....++++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 344444443 3455555544 4789999999999999999999988888775542 34556666677666
Q ss_pred c--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH
Q 024712 127 D--NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL 201 (263)
Q Consensus 127 ~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 201 (263)
. +|.++.++..+|......|++++|...+++++.++| +..++..+|.++...|++++|+..|++++.++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 4 677788899999999999999999999999999999 5889999999999999999999999999999999875
No 119
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.36 E-value=5.3e-11 Score=86.93 Aligned_cols=122 Identities=17% Similarity=0.109 Sum_probs=94.2
Q ss_pred ChHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHH
Q 024712 79 CLDVAKDCIKVLQKQFPE--SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIE 153 (263)
Q Consensus 79 ~~~~A~~~~~~~~~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~ 153 (263)
.+..+...+...++..+. ....+..+|.++...|++++|+..|++++...|+. +.++.++|.++...|++++|+.
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~ 93 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE 93 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 344455555555444443 35667888999999999999999999998876653 3578899999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHH-------hcccHH-------HHHHHHHHHHhhCCCCH
Q 024712 154 WLNKYLETFMADHDAWRELAEIYV-------SLQMYK-------QAAFCYEELILSQPTVP 200 (263)
Q Consensus 154 ~~~~~l~~~p~~~~~~~~la~~~~-------~~g~~~-------~A~~~~~~al~~~p~~~ 200 (263)
.+++++.++|.....+..+|.++. ..|+++ +|+.+|++++..+|.+.
T Consensus 94 ~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 94 YYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 999999999999888888888888 666766 66666667777787653
No 120
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.36 E-value=3.2e-11 Score=104.58 Aligned_cols=170 Identities=11% Similarity=0.026 Sum_probs=151.1
Q ss_pred CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 024712 78 QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK 157 (263)
Q Consensus 78 ~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 157 (263)
++...|...|-+++..+|.-..++..+|.+|....+...|..+|+++.++++.+..++...+..|....+++.|....-.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999776
Q ss_pred HHHhcCCC--HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 158 YLETFMAD--HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 158 ~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
+-+..|.. ...|..+|..|...+++.+|+..|+.++..+|.+...|..+|.+|...|+ +..|++.|.++..++|.
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr---y~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR---YSHALKVFTKASLLRPL 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc---eehHHHhhhhhHhcCcH
Confidence 66666654 35677899999999999999999999999999999999999999999999 99999999999999997
Q ss_pred -cchhHHHhHHHHHhh
Q 024712 236 -KNTKALFGICLVMFV 250 (263)
Q Consensus 236 -~~~~~~~~l~~~~~~ 250 (263)
...++.-....|..+
T Consensus 629 s~y~~fk~A~~ecd~G 644 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNG 644 (1238)
T ss_pred hHHHHHHHHHHHHHhh
Confidence 444444455555443
No 121
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.36 E-value=1.7e-10 Score=86.76 Aligned_cols=152 Identities=18% Similarity=0.189 Sum_probs=118.1
Q ss_pred CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH---HHH
Q 024712 96 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH---DAW 169 (263)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~ 169 (263)
.++..++..|..++..|+|.+|+..|++++...|..+ .+.+.+|.+++..|++++|+..+++.++..|+++ .++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 3567888999999999999999999999999988764 6889999999999999999999999999999884 578
Q ss_pred HHHHHHHHhc-----------ccHHHHHHHHHHHHhhCCCCHH-----------------HHHHHHHHHHhcCCCCcHHH
Q 024712 170 RELAEIYVSL-----------QMYKQAAFCYEELILSQPTVPL-----------------YHLAYADVLYTLGGVDNILL 221 (263)
Q Consensus 170 ~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~~~~g~~~~~~~ 221 (263)
+.+|.+++.. +...+|+..|+..+...|++.. --..+|..|+..|. +..
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~---y~a 159 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGK---YKA 159 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT----HHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---HHH
Confidence 8888887654 3456899999999999998853 22457889999999 999
Q ss_pred HHHHHHHhhccCCCc--chhHHHhHHHHHhh
Q 024712 222 AKKYYASTIDLTGGK--NTKALFGICLVMFV 250 (263)
Q Consensus 222 A~~~~~~al~~~~~~--~~~~~~~l~~~~~~ 250 (263)
|+..++.+++..|++ ...++..++.++..
T Consensus 160 A~~r~~~v~~~yp~t~~~~~al~~l~~~y~~ 190 (203)
T PF13525_consen 160 AIIRFQYVIENYPDTPAAEEALARLAEAYYK 190 (203)
T ss_dssp HHHHHHHHHHHSTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence 999999999999971 22344444444443
No 122
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.35 E-value=2.2e-09 Score=98.11 Aligned_cols=159 Identities=17% Similarity=0.143 Sum_probs=77.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Q 024712 67 YEQVSIAAMDCQCLDVAKDCIKVLQKQF-PESKRVGRLEGILLEAKGLWAEAEKAYSSLLED--NPLDPVLHKRRVAIAK 143 (263)
Q Consensus 67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~ 143 (263)
|..+...+.+.|++++|.++|+.+.+.. +.++..+..+...|.+.|++++|+.+|+++... .|+ ...+..+...+.
T Consensus 582 ynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~ 660 (1060)
T PLN03218 582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAG 660 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Confidence 3334444444444444444444444433 223344444444444555555555555544443 122 334444455555
Q ss_pred HcCChhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHhcCCCCcHH
Q 024712 144 AQGNFPTAIEWLNKYLETF-MADHDAWRELAEIYVSLQMYKQAAFCYEELILS--QPTVPLYHLAYADVLYTLGGVDNIL 220 (263)
Q Consensus 144 ~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~~~ 220 (263)
+.|++++|...++...+.. +.+...+..+...|.+.|++++|..+|++.... .| +...|..+...|...|+ ++
T Consensus 661 k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~---~e 736 (1060)
T PLN03218 661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQ---LP 736 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCC---HH
Confidence 5555555555555554432 223445555555555555555555555555432 22 23445555555556666 66
Q ss_pred HHHHHHHHhh
Q 024712 221 LAKKYYASTI 230 (263)
Q Consensus 221 ~A~~~~~~al 230 (263)
+|.+.|.+..
T Consensus 737 eAlelf~eM~ 746 (1060)
T PLN03218 737 KALEVLSEMK 746 (1060)
T ss_pred HHHHHHHHHH
Confidence 6666665544
No 123
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.35 E-value=2.1e-09 Score=98.19 Aligned_cols=161 Identities=10% Similarity=-0.010 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Q 024712 66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQF--PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN-PLDPVLHKRRVAIA 142 (263)
Q Consensus 66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~ 142 (263)
+|..+...+.+.|++++|..+|+.+.... |+ ...+..+...+...|++++|.++++.+.+.. +.+...+..+...|
T Consensus 616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay 694 (1060)
T PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC 694 (1060)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34444444445555555555555544431 22 3344444444555555555555555554432 12334444455555
Q ss_pred HHcCChhHHHHHHHHHHHh-cCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHhcCCCCcH
Q 024712 143 KAQGNFPTAIEWLNKYLET-FMADHDAWRELAEIYVSLQMYKQAAFCYEELILS--QPTVPLYHLAYADVLYTLGGVDNI 219 (263)
Q Consensus 143 ~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~~ 219 (263)
.+.|++++|...|++.... ...+...|..+...|...|++++|+++|++.... .|+ ...+..+...+...|+ +
T Consensus 695 ~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~---l 770 (1060)
T PLN03218 695 SNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDD---A 770 (1060)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCC---H
Confidence 5555555555555544332 1112344445555555555555555555544332 122 2233333444445555 5
Q ss_pred HHHHHHHHHhhc
Q 024712 220 LLAKKYYASTID 231 (263)
Q Consensus 220 ~~A~~~~~~al~ 231 (263)
++|...+.+.++
T Consensus 771 e~A~~l~~~M~k 782 (1060)
T PLN03218 771 DVGLDLLSQAKE 782 (1060)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 124
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.35 E-value=5.6e-12 Score=80.87 Aligned_cols=81 Identities=27% Similarity=0.324 Sum_probs=53.0
Q ss_pred cCChhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHH
Q 024712 145 QGNFPTAIEWLNKYLETFMA--DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLA 222 (263)
Q Consensus 145 ~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A 222 (263)
+|+++.|+..++++++..|. +...++.+|.+++..|+|++|+.++++ .+.+|.++.....+|.+++.+|+ +++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~---y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK---YEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT----HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC---HHHH
Confidence 46667777777777777664 344566667777777777777777766 66666666666666777777777 7777
Q ss_pred HHHHHHh
Q 024712 223 KKYYAST 229 (263)
Q Consensus 223 ~~~~~~a 229 (263)
++.|+++
T Consensus 78 i~~l~~~ 84 (84)
T PF12895_consen 78 IKALEKA 84 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 7766653
No 125
>PRK15331 chaperone protein SicA; Provisional
Probab=99.34 E-value=3.7e-11 Score=84.47 Aligned_cols=98 Identities=9% Similarity=-0.095 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024712 131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL 210 (263)
Q Consensus 131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 210 (263)
.....+..|.-++..|++++|...|+-+...+|.+++.|..||.++..+++|++|+..|..+..+++++|...+..|.|+
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~ 115 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQ 115 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHH
Confidence 33444555555556666666666666655566666666666666666666666666666666666666666666666666
Q ss_pred HhcCCCCcHHHHHHHHHHhhc
Q 024712 211 YTLGGVDNILLAKKYYASTID 231 (263)
Q Consensus 211 ~~~g~~~~~~~A~~~~~~al~ 231 (263)
+.+|+ ...|+..|..++.
T Consensus 116 l~l~~---~~~A~~~f~~a~~ 133 (165)
T PRK15331 116 LLMRK---AAKARQCFELVNE 133 (165)
T ss_pred HHhCC---HHHHHHHHHHHHh
Confidence 66666 6666666665555
No 126
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=8.9e-11 Score=93.15 Aligned_cols=133 Identities=19% Similarity=0.124 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhcCC----CC-----------HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC
Q 024712 100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNP----LD-----------PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164 (263)
Q Consensus 100 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p----~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 164 (263)
.....|..+++.|+|..|...|++++..-+ .+ ..++.+++.++.+++++.+|+...+++|..+|+
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~ 289 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN 289 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 345678889999999999999999877422 11 247889999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCC
Q 024712 165 DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 234 (263)
Q Consensus 165 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~ 234 (263)
+..+++..|.++...|+|+.|+..|++++++.|+|..+...+..+..+... ..++..+.|.+.+..-+
T Consensus 290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~--~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE--YEEKEKKMYANMFAKLA 357 (397)
T ss_pred chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999888888877765 13445788888887644
No 127
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.32 E-value=8.2e-12 Score=80.08 Aligned_cols=80 Identities=29% Similarity=0.326 Sum_probs=48.5
Q ss_pred cCcHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHH
Q 024712 111 KGLWAEAEKAYSSLLEDNPL--DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC 188 (263)
Q Consensus 111 ~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 188 (263)
.|+++.|+..++++++.+|. +...++.+|.+++..|++++|+..+++ ...+|.++...+.+|.+++.+|++++|+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35666666666666666664 234455566666666666666666666 555666656666666666666666666666
Q ss_pred HHH
Q 024712 189 YEE 191 (263)
Q Consensus 189 ~~~ 191 (263)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 654
No 128
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.31 E-value=2.1e-10 Score=84.07 Aligned_cols=120 Identities=17% Similarity=0.115 Sum_probs=105.1
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHH
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHK 136 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 136 (263)
.+.....+..+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+++++...|.+...+.
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 110 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN 110 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 44567788999999999999999999999999887653 468899999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC
Q 024712 137 RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV 199 (263)
Q Consensus 137 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 199 (263)
.+|.++...|+...+...+..++. .+++|+.++++++..+|++
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 999999999998877766665542 3788899999999998887
No 129
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.30 E-value=1.2e-11 Score=75.15 Aligned_cols=60 Identities=23% Similarity=0.329 Sum_probs=24.2
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC
Q 024712 139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT 198 (263)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 198 (263)
|..++..|++++|+..|+++++.+|.++.+|+.+|.++..+|++++|+..|+++++.+|+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 333344444444444444444444444444444444444444444444444444444443
No 130
>PRK11906 transcriptional regulator; Provisional
Probab=99.29 E-value=1.2e-09 Score=88.90 Aligned_cols=131 Identities=13% Similarity=-0.033 Sum_probs=118.0
Q ss_pred HHHHHHHHHcC---cHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHHc---------CChhHHHHHHHHHHHhcCCCH
Q 024712 102 RLEGILLEAKG---LWAEAEKAYSSLL---EDNPLDPVLHKRRVAIAKAQ---------GNFPTAIEWLNKYLETFMADH 166 (263)
Q Consensus 102 ~~~a~~~~~~~---~~~~A~~~~~~~~---~~~p~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~l~~~p~~~ 166 (263)
+..|......+ ..+.|+.+|.+++ +.+|+...++..++.+++.. ....+|....+++++++|.|+
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 56666665554 4567899999999 89999999999999888764 234578899999999999999
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 167 DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 167 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
.++..+|.+....++++.|+..|++++.++|+.+.+++..|.+.+..|+ .++|...++++++++|.
T Consensus 339 ~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~---~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 339 KILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK---IEEARICIDKSLQLEPR 404 (458)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhccCch
Confidence 9999999999999999999999999999999999999999999999999 99999999999999996
No 131
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.29 E-value=3.6e-10 Score=87.63 Aligned_cols=103 Identities=16% Similarity=0.148 Sum_probs=58.7
Q ss_pred HHHHHHHHHH-HHcCcHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHH
Q 024712 99 RVGRLEGILL-EAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRE 171 (263)
Q Consensus 99 ~~~~~~a~~~-~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~ 171 (263)
...+..+..+ ...|+|++|+..|++.+...|++ +.+++.+|.+++..|++++|+..|++++..+|++ +++++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3344444443 33456666666666666666555 3455666666666666666666666666555543 455555
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhhCCCCHH
Q 024712 172 LAEIYVSLQMYKQAAFCYEELILSQPTVPL 201 (263)
Q Consensus 172 la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 201 (263)
+|.++...|++++|+..|+++++..|+...
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 666666666666666666666666665543
No 132
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.28 E-value=3e-10 Score=92.52 Aligned_cols=122 Identities=21% Similarity=0.242 Sum_probs=105.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 024712 69 QVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNF 148 (263)
Q Consensus 69 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 148 (263)
.+...+...+.++.|+.+++++.+.+|+ +...++.++...++..+|+..+.+++..+|.+...+...+..+...+++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 3455555678899999999999888765 5567888888889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 024712 149 PTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELI 193 (263)
Q Consensus 149 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 193 (263)
+.|+...++++...|++...|+.|+.+|...|++++|+..+..+-
T Consensus 251 ~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999998776543
No 133
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=1.1e-09 Score=90.44 Aligned_cols=188 Identities=16% Similarity=0.031 Sum_probs=147.1
Q ss_pred hccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCc
Q 024712 34 LKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGL 113 (263)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~ 113 (263)
....+.++++..+..++.. .|+..+++.....+..+.+.|++|+.+.+.-..... .....+..+.|.++.+.
T Consensus 23 ~~~~e~e~a~k~~~Kil~~-------~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~-~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 23 GKNGEYEEAVKTANKILSI-------VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLV-INSFFFEKAYCEYRLNK 94 (652)
T ss_pred ccchHHHHHHHHHHHHHhc-------CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhh-cchhhHHHHHHHHHccc
Confidence 4456678888888888766 688888889889999999999999855543322111 12223688999999999
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc------------------------------C
Q 024712 114 WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF------------------------------M 163 (263)
Q Consensus 114 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~------------------------------p 163 (263)
.++|+..++ ..++.+.......+++++++|+|++|...|+..++.+ |
T Consensus 95 ~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~ 171 (652)
T KOG2376|consen 95 LDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVP 171 (652)
T ss_pred HHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCC
Confidence 999999988 4556667778888999999999999999999875433 2
Q ss_pred C-CHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC-------CCC--------HHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 024712 164 A-DHDAWRELAEIYVSLQMYKQAAFCYEELILSQ-------PTV--------PLYHLAYADVLYTLGGVDNILLAKKYYA 227 (263)
Q Consensus 164 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~--------~~~~~~la~~~~~~g~~~~~~~A~~~~~ 227 (263)
. +.+.+++.|-++...|+|.+|++.+++++.+. ..+ ..+...++.++...|+ .++|...|.
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq---t~ea~~iy~ 248 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ---TAEASSIYV 248 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc---hHHHHHHHH
Confidence 2 34567889999999999999999999995331 111 1367889999999999 999999999
Q ss_pred HhhccCCC
Q 024712 228 STIDLTGG 235 (263)
Q Consensus 228 ~al~~~~~ 235 (263)
..++.+|.
T Consensus 249 ~~i~~~~~ 256 (652)
T KOG2376|consen 249 DIIKRNPA 256 (652)
T ss_pred HHHHhcCC
Confidence 99999886
No 134
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.28 E-value=1.9e-09 Score=83.07 Aligned_cols=152 Identities=12% Similarity=0.072 Sum_probs=124.3
Q ss_pred CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHH
Q 024712 96 ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL---HKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAW 169 (263)
Q Consensus 96 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~ 169 (263)
.++...+..|..+...|+|++|+..|++++...|..+.+ ...+|.+++..+++++|+..+++.++.+|++ +.++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 466778889999999999999999999999999998754 4889999999999999999999999999888 4578
Q ss_pred HHHHHHHHhcc------------------cHHHHHHHHHHHHhhCCCCHH-----------------HHHHHHHHHHhcC
Q 024712 170 RELAEIYVSLQ------------------MYKQAAFCYEELILSQPTVPL-----------------YHLAYADVLYTLG 214 (263)
Q Consensus 170 ~~la~~~~~~g------------------~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~~~~g 214 (263)
+.+|.++...+ ...+|+..|++.++..|+... --..+|..|++.|
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~ 189 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRG 189 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888764443 235788999999999998742 1235778899999
Q ss_pred CCCcHHHHHHHHHHhhccCCC--cchhHHHhHHHHHhh
Q 024712 215 GVDNILLAKKYYASTIDLTGG--KNTKALFGICLVMFV 250 (263)
Q Consensus 215 ~~~~~~~A~~~~~~al~~~~~--~~~~~~~~l~~~~~~ 250 (263)
. +..|+.-++.+++..|+ ....+++.+...+..
T Consensus 190 ~---y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~ 224 (243)
T PRK10866 190 A---YVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQ 224 (243)
T ss_pred c---hHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHH
Confidence 9 99999999999999887 334455555555443
No 135
>PRK15331 chaperone protein SicA; Provisional
Probab=99.27 E-value=1.5e-10 Score=81.45 Aligned_cols=98 Identities=13% Similarity=0.050 Sum_probs=66.0
Q ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024712 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY 176 (263)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 176 (263)
.....+..|.-++..|++++|...|+-+...+|.++..+..+|.++..++++++|+..|..+..++++++...+..|.|+
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~ 115 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQ 115 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHH
Confidence 34455556666666666666666666666666666666666666666666666676666666666666666666667777
Q ss_pred HhcccHHHHHHHHHHHHh
Q 024712 177 VSLQMYKQAAFCYEELIL 194 (263)
Q Consensus 177 ~~~g~~~~A~~~~~~al~ 194 (263)
+..|+.+.|..+|+.++.
T Consensus 116 l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 116 LLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHhCCHHHHHHHHHHHHh
Confidence 777777777666666666
No 136
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=99.27 E-value=6.9e-09 Score=78.14 Aligned_cols=170 Identities=14% Similarity=0.047 Sum_probs=140.8
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHH---HH
Q 024712 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE---SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV---LH 135 (263)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~ 135 (263)
.....+...|...++.|++++|.+.|+.+...+|. ...+...++.++...+++++|+...++.+.+.|.++. ++
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 35677888999999999999999999999999985 4578889999999999999999999999999998864 56
Q ss_pred HHHHHHHHHcC--------ChhHHHHHHHHHHHhcCCCHH-----------------HHHHHHHHHHhcccHHHHHHHHH
Q 024712 136 KRRVAIAKAQG--------NFPTAIEWLNKYLETFMADHD-----------------AWRELAEIYVSLQMYKQAAFCYE 190 (263)
Q Consensus 136 ~~l~~~~~~~g--------~~~~A~~~~~~~l~~~p~~~~-----------------~~~~la~~~~~~g~~~~A~~~~~ 190 (263)
+..|.+++..= -...|+..|+..+...|++.- --..+|..|.+.|.+-.|+.-++
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~ 191 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFE 191 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 66777766432 245788999999999999831 12357899999999999999999
Q ss_pred HHHhhCCCC---HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 191 ELILSQPTV---PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 191 ~al~~~p~~---~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
.+++..|+. ..++..+..+|..+|- .++|.+ ..+++..|+.
T Consensus 192 ~v~e~y~~t~~~~eaL~~l~eaY~~lgl---~~~a~~-~~~vl~~N~p 235 (254)
T COG4105 192 EVLENYPDTSAVREALARLEEAYYALGL---TDEAKK-TAKVLGANYP 235 (254)
T ss_pred HHHhccccccchHHHHHHHHHHHHHhCC---hHHHHH-HHHHHHhcCC
Confidence 999987766 4578888999999998 777765 4567777765
No 137
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.27 E-value=4.3e-11 Score=72.75 Aligned_cols=64 Identities=22% Similarity=0.232 Sum_probs=41.2
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH
Q 024712 103 LEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH 166 (263)
Q Consensus 103 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 166 (263)
.+|..+...|++++|+..|++++..+|+++.++..+|.++..+|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 3566666666666666666666666666666666666666666666666666666666666653
No 138
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.24 E-value=4.6e-08 Score=77.56 Aligned_cols=169 Identities=14% Similarity=0.067 Sum_probs=109.7
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC------------
Q 024712 61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN------------ 128 (263)
Q Consensus 61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------ 128 (263)
.+...+....+......|+++.|...+.++.+..|.++.+......+|...|+|.+...++.++-+..
T Consensus 150 ~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~ 229 (400)
T COG3071 150 DDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQ 229 (400)
T ss_pred CchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHH
Confidence 34566777788888999999999999999999999999999999999999999988888777764421
Q ss_pred ------------C------------------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 024712 129 ------------P------------------LDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS 178 (263)
Q Consensus 129 ------------p------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 178 (263)
+ .++.....++.-+...|+.++|.+..+.+++..-+.. ....++ ...
T Consensus 230 ~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~ 306 (400)
T COG3071 230 QAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLR 306 (400)
T ss_pred HHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcC
Confidence 1 1233444556666777888888777777665432221 111111 112
Q ss_pred cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 179 LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 179 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
-++...=++..++.++..|++|..+..||..+++.+. +.+|..+|+.+++..|+
T Consensus 307 ~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~---w~kA~~~leaAl~~~~s 360 (400)
T COG3071 307 PGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKL---WGKASEALEAALKLRPS 360 (400)
T ss_pred CCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhH---HHHHHHHHHHHHhcCCC
Confidence 3444444455555555555555555555555555555 55555555555555554
No 139
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.24 E-value=7.7e-09 Score=87.47 Aligned_cols=179 Identities=13% Similarity=0.019 Sum_probs=136.0
Q ss_pred hcCCCccHHHHHHHHHHhccCChhHHHHHHHHHhcCcccccc---------cCcch-HHHHHHHHHHHHHcCChHHHHHH
Q 024712 17 VDNGGGGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSA---------LGPDV-WTLYEQVSIAAMDCQCLDVAKDC 86 (263)
Q Consensus 17 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~la~~~~~~~~~~~A~~~ 86 (263)
+.+|......-++.+.. ++.+...+..+...+......... .+|.. ..++..++..+...|++++|+.+
T Consensus 138 l~KgvPslF~~lk~Ly~-d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~ 216 (517)
T PF12569_consen 138 LRKGVPSLFSNLKPLYK-DPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEY 216 (517)
T ss_pred HhcCCchHHHHHHHHHc-ChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45555565555555544 333444555555555433221111 12221 23556789999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC--C
Q 024712 87 IKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM--A 164 (263)
Q Consensus 87 ~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p--~ 164 (263)
++++++..|..++.+...|.++...|++.+|...++.+-.+++.+-.+....+..+.+.|+.++|...+......+. .
T Consensus 217 Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~ 296 (517)
T PF12569_consen 217 IDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPL 296 (517)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcc
Confidence 99999999999999999999999999999999999999999999999989999999999999999999887765442 1
Q ss_pred C-------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhC
Q 024712 165 D-------HDAWRELAEIYVSLQMYKQAAFCYEELILSQ 196 (263)
Q Consensus 165 ~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 196 (263)
. .+.....|.+|...|++..|++.|..+.+..
T Consensus 297 ~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 297 SNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 1 2333567999999999999999999888663
No 140
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.24 E-value=1.1e-09 Score=97.54 Aligned_cols=176 Identities=11% Similarity=-0.005 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Q 024712 65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN-PLDPVLHKRRVAIAK 143 (263)
Q Consensus 65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~ 143 (263)
.++..+...|.+.|++++|.++|+.+. +.+...|..+...|...|++++|+.+|+++.... .-+...+..+...+.
T Consensus 260 ~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~ 336 (697)
T PLN03081 260 FVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336 (697)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345557777888888888888887663 3466778888888888888888888888886643 224556777788888
Q ss_pred HcCChhHHHHHHHHHHHhc-CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHH
Q 024712 144 AQGNFPTAIEWLNKYLETF-MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLA 222 (263)
Q Consensus 144 ~~g~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A 222 (263)
..|++++|.+.+...++.. +.+..++..+...|.+.|++++|..+|++..+ .+...|..+...|...|+ .++|
T Consensus 337 ~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~---~~~A 410 (697)
T PLN03081 337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGR---GTKA 410 (697)
T ss_pred hccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCC---HHHH
Confidence 8888888888888887764 45566777788888888888888888877643 245567777788888888 8888
Q ss_pred HHHHHHhhccCCCcchhHHHhHHHHHh
Q 024712 223 KKYYASTIDLTGGKNTKALFGICLVMF 249 (263)
Q Consensus 223 ~~~~~~al~~~~~~~~~~~~~l~~~~~ 249 (263)
++.|++..+..-.++...+..++.++.
T Consensus 411 ~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 437 (697)
T PLN03081 411 VEMFERMIAEGVAPNHVTFLAVLSACR 437 (697)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 888887765432234444455544443
No 141
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.23 E-value=7.6e-08 Score=76.35 Aligned_cols=184 Identities=15% Similarity=0.027 Sum_probs=142.2
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHH
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE-SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR 138 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 138 (263)
.+.....+..-+.+.-..|+++.+-.++.++.+..++ ...+....+.+....|+++.|..-..++++..|.++.+....
T Consensus 114 ~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa 193 (400)
T COG3071 114 GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLA 193 (400)
T ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHH
Confidence 4455566666777888899999999999999998553 445677889999999999999999999999999999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhc------------------------------------------CCCHHHHHHHHHHH
Q 024712 139 VAIAKAQGNFPTAIEWLNKYLETF------------------------------------------MADHDAWRELAEIY 176 (263)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~l~~~------------------------------------------p~~~~~~~~la~~~ 176 (263)
..+|...|++.+....+.+.-+.. .+++..-..++.-+
T Consensus 194 ~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~l 273 (400)
T COG3071 194 LRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERL 273 (400)
T ss_pred HHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHH
Confidence 999999999988887776643321 12344555677788
Q ss_pred HhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 177 VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 177 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
...|++++|.+..+++++..-+.. ....++ ...-++ ...=++..++.+...|+ ++..+..|...|.+
T Consensus 274 i~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d---~~~l~k~~e~~l~~h~~-~p~L~~tLG~L~~k 340 (400)
T COG3071 274 IRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGD---PEPLIKAAEKWLKQHPE-DPLLLSTLGRLALK 340 (400)
T ss_pred HHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCC---chHHHHHHHHHHHhCCC-ChhHHHHHHHHHHH
Confidence 899999999999999998765433 222222 123455 77778888888888886 66777777777666
No 142
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.23 E-value=9.7e-10 Score=87.00 Aligned_cols=185 Identities=18% Similarity=0.136 Sum_probs=138.0
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--CCC---
Q 024712 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN--PLD--- 131 (263)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~--- 131 (263)
-...|...|..+...+++++|...|.++....- .....+...+.++... ++++|+.++++++... .++
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~ 112 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQ 112 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHH
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHH
Confidence 456788889999999999999999999877542 1234455566666554 9999999999999852 222
Q ss_pred -HHHHHHHHHHHHHc-CChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC----
Q 024712 132 -PVLHKRRVAIAKAQ-GNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV---- 199 (263)
Q Consensus 132 -~~~~~~l~~~~~~~-g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---- 199 (263)
..++..+|.+|... |++++|+.+|+++++....+ ...+..+|.++...|+|++|+..|+++....-++
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~ 192 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLK 192 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccc
Confidence 24788999999998 99999999999999874322 3456789999999999999999999998753221
Q ss_pred H---HHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC----cchhHHHhHHHHHhhc
Q 024712 200 P---LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG----KNTKALFGICLVMFVC 251 (263)
Q Consensus 200 ~---~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~----~~~~~~~~l~~~~~~~ 251 (263)
. ..+...+.|++..|+ +-.|...+.+....+|+ .+..+...|+.++...
T Consensus 193 ~~~~~~~l~a~l~~L~~~D---~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~ 248 (282)
T PF14938_consen 193 YSAKEYFLKAILCHLAMGD---YVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEG 248 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT----HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhC
Confidence 1 245667889999999 99999999999999885 2345556666666553
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.23 E-value=8e-10 Score=90.04 Aligned_cols=120 Identities=19% Similarity=0.073 Sum_probs=109.5
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHH
Q 024712 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK 183 (263)
Q Consensus 104 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 183 (263)
+-.++...++++.|+..+++..+.+|+ +...++.++...++..+|+..+++++...|.+...+...+..+...++++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 344556678999999999999998875 45668999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHh
Q 024712 184 QAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST 229 (263)
Q Consensus 184 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~a 229 (263)
.|+.+.++++...|++...|..|+.+|...|+ +++|+-.+..+
T Consensus 252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d---~e~ALlaLNs~ 294 (395)
T PF09295_consen 252 LALEIAKKAVELSPSEFETWYQLAECYIQLGD---FENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCC---HHHHHHHHhcC
Confidence 99999999999999999999999999999999 99999777654
No 144
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.22 E-value=1.3e-09 Score=84.56 Aligned_cols=104 Identities=18% Similarity=0.176 Sum_probs=93.1
Q ss_pred HHHHHHHHHH-HHcCChHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC---HHHHHH
Q 024712 65 TLYEQVSIAA-MDCQCLDVAKDCIKVLQKQFPES---KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKR 137 (263)
Q Consensus 65 ~~~~~la~~~-~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~ 137 (263)
...+..+..+ +..|++++|+..|+.++..+|++ +.+++.+|.+|+..|++++|+..|++++...|++ +++++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4555566655 66799999999999999999987 5799999999999999999999999999887775 678999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhcCCCHHH
Q 024712 138 RVAIAKAQGNFPTAIEWLNKYLETFMADHDA 168 (263)
Q Consensus 138 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 168 (263)
+|.++...|++++|+..|+++++.+|++..+
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 9999999999999999999999999998754
No 145
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.22 E-value=9.8e-10 Score=74.46 Aligned_cols=96 Identities=19% Similarity=0.059 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC---CHHHHHHH
Q 024712 99 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA---DHDAWREL 172 (263)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l 172 (263)
.+.+..|.++...|+.++|+..|++++...... ..++..+|..+...|++++|+..+++.+..+|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 466778888888888888888888888865443 347778888888888888888888888888777 66777778
Q ss_pred HHHHHhcccHHHHHHHHHHHHh
Q 024712 173 AEIYVSLQMYKQAAFCYEELIL 194 (263)
Q Consensus 173 a~~~~~~g~~~~A~~~~~~al~ 194 (263)
+.++...|++++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888777664
No 146
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.21 E-value=3.4e-09 Score=77.41 Aligned_cols=182 Identities=15% Similarity=0.080 Sum_probs=135.0
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 024712 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI 141 (263)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 141 (263)
+....+...|..|-..|-+.-|+--|.+++.+.|+-+.++..+|..+...|+|+.|.+.|...++++|....++.+.|..
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~ 142 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 142 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence 56777888888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHHHHHhcCCCHH--HHHHH--------------HHHH--------------HhcccHHHHHHHHHH
Q 024712 142 AKAQGNFPTAIEWLNKYLETFMADHD--AWREL--------------AEIY--------------VSLQMYKQAAFCYEE 191 (263)
Q Consensus 142 ~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~l--------------a~~~--------------~~~g~~~~A~~~~~~ 191 (263)
++--|++.-|.+.+.+-.+.+|++|- .|..+ ..-+ +..|+.. -...+++
T Consensus 143 ~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS-~e~l~~~ 221 (297)
T COG4785 143 LYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKIS-EETLMER 221 (297)
T ss_pred eeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhcc-HHHHHHH
Confidence 99999999999999999888888863 23221 1111 1112211 1122333
Q ss_pred HHhhCCCC-------HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHH
Q 024712 192 LILSQPTV-------PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLV 247 (263)
Q Consensus 192 al~~~p~~-------~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~ 247 (263)
+..-..++ ...++.+|..+...|+ .++|...|+-++..+--..+...+.+...
T Consensus 222 ~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~---~~~A~~LfKLaiannVynfVE~RyA~~EL 281 (297)
T COG4785 222 LKADATDNTSLAEHLTETYFYLGKYYLSLGD---LDEATALFKLAVANNVYNFVEHRYALLEL 281 (297)
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHHhcccc---HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33322333 2367778888888899 99999999998876543334444444433
No 147
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.20 E-value=2.8e-10 Score=89.77 Aligned_cols=175 Identities=15% Similarity=0.027 Sum_probs=132.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhC-C-CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 024712 67 YEQVSIAAMDCQCLDVAKDCIKVLQKQF-P-ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA 144 (263)
Q Consensus 67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 144 (263)
...++..+...++-+.++..++..+... + .++.+....|.++...|++++|+..+.+. .+.++......++..
T Consensus 69 v~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~ 143 (290)
T PF04733_consen 69 VRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLK 143 (290)
T ss_dssp HHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHH
Confidence 3444544433345556666665544332 2 35666777888999999999999887654 567888888999999
Q ss_pred cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHH
Q 024712 145 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ--MYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLA 222 (263)
Q Consensus 145 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A 222 (263)
.++++.|.+.++..-+.+.++.-.....+.+.+..| .+++|...|++.....|.++..+..++.++..+|+ +++|
T Consensus 144 ~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~---~~eA 220 (290)
T PF04733_consen 144 MNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGH---YEEA 220 (290)
T ss_dssp TT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT----HHHH
T ss_pred cCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC---HHHH
Confidence 999999999999998887776655555555666655 58999999999888888889999999999999999 9999
Q ss_pred HHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 223 KKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 223 ~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
...+.+++..+|. ++..+.+++.|+..
T Consensus 221 e~~L~~al~~~~~-~~d~LaNliv~~~~ 247 (290)
T PF04733_consen 221 EELLEEALEKDPN-DPDTLANLIVCSLH 247 (290)
T ss_dssp HHHHHHHCCC-CC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccC-CHHHHHHHHHHHHH
Confidence 9999999999996 88888888887555
No 148
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=1.1e-09 Score=83.73 Aligned_cols=185 Identities=17% Similarity=0.153 Sum_probs=145.9
Q ss_pred cCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHH
Q 024712 36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWA 115 (263)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~ 115 (263)
..+.+.+++......+. +|..-..+..+|.+|+...++..|-.+|+++...+|......+..+..+...+.+.
T Consensus 23 d~ry~DaI~~l~s~~Er-------~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~A 95 (459)
T KOG4340|consen 23 DARYADAIQLLGSELER-------SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYA 95 (459)
T ss_pred HhhHHHHHHHHHHHHhc-------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccH
Confidence 34456666665555444 56566667778999999999999999999999999988888888899999999999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 024712 116 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS 195 (263)
Q Consensus 116 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 195 (263)
.|+.+...+.....-...+...-+.+.+..+++..+....++.- ..++.+...+.|-+.++.|+++.|.+-|+.+++.
T Consensus 96 DALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegqyEaAvqkFqaAlqv 173 (459)
T KOG4340|consen 96 DALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQYEAAVQKFQAALQV 173 (459)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeeccccHHHHHHHHHHHHhh
Confidence 99888776664321222345555667777888877765554431 1256788899999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712 196 QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (263)
Q Consensus 196 ~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~ 232 (263)
...++..-++++.+++..|+ +..|+++....++.
T Consensus 174 sGyqpllAYniALaHy~~~q---yasALk~iSEIieR 207 (459)
T KOG4340|consen 174 SGYQPLLAYNLALAHYSSRQ---YASALKHISEIIER 207 (459)
T ss_pred cCCCchhHHHHHHHHHhhhh---HHHHHHHHHHHHHh
Confidence 99999999999999999999 99999998887764
No 149
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.17 E-value=4.1e-09 Score=93.95 Aligned_cols=163 Identities=9% Similarity=-0.017 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC--CHHHHHHHHHH
Q 024712 65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP-ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL--DPVLHKRRVAI 141 (263)
Q Consensus 65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~ 141 (263)
..|..+...|.+.|+.++|+++|+++..... -+...+..+...+...|..++|.++|+.+.+..+- +...+..+...
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 3455666777777777777777777766431 23444555666667777777777777777653322 23456667777
Q ss_pred HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHH
Q 024712 142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL 221 (263)
Q Consensus 142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~ 221 (263)
+.+.|++++|.+.+++.- ..| +...|..+...+...|+++.|...+++++.+.|++...+..++.+|...|+ +++
T Consensus 472 l~r~G~~~eA~~~~~~~~-~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~---~~~ 546 (697)
T PLN03081 472 LGREGLLDEAYAMIRRAP-FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR---QAE 546 (697)
T ss_pred HHhcCCHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCC---HHH
Confidence 777788888877776531 223 345677777778888888888888888888888877778888888888888 888
Q ss_pred HHHHHHHhhcc
Q 024712 222 AKKYYASTIDL 232 (263)
Q Consensus 222 A~~~~~~al~~ 232 (263)
|.+.++...+.
T Consensus 547 A~~v~~~m~~~ 557 (697)
T PLN03081 547 AAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHc
Confidence 88888766543
No 150
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=3.2e-09 Score=84.46 Aligned_cols=131 Identities=15% Similarity=0.066 Sum_probs=113.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCC---------------cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC
Q 024712 67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPE---------------SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD 131 (263)
Q Consensus 67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~ 131 (263)
....|..+++.|+|..|...|++++...+. -..++.+++.++..+++|.+|+....+++..+|+|
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 334688899999999999999998885441 12367789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHH-HHHHHHHHHhhCC
Q 024712 132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQ-AAFCYEELILSQP 197 (263)
Q Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p 197 (263)
..++++.|.++...|+++.|+..|+++++..|.|..+...+..+.....++.+ ..+.|...+..-+
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999988877666654 4778888776544
No 151
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.16 E-value=1.8e-10 Score=70.71 Aligned_cols=64 Identities=31% Similarity=0.411 Sum_probs=35.4
Q ss_pred HcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024712 144 AQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA 207 (263)
Q Consensus 144 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 207 (263)
..|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++.++..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 4455555555555555555555555555555555555555555555555555555554444443
No 152
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.16 E-value=3.6e-08 Score=88.89 Aligned_cols=228 Identities=14% Similarity=0.091 Sum_probs=178.4
Q ss_pred hcCCCccHHHHHHHHHHh-ccCChhHHHHHHHHHhcCccc-ccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q 024712 17 VDNGGGGAWEYLCLVKKL-KVRRPDKVLRHGLSILNDPKK-RSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF 94 (263)
Q Consensus 17 ~~~~~~~a~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 94 (263)
++.....++.+++.|.-. ...+.+.+...+...+..-.. .....-+.|.+|.++-..| |.-+.-.+.|+++.+..
T Consensus 1451 vrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~kVFeRAcqyc 1527 (1710)
T KOG1070|consen 1451 VRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLKKVFERACQYC 1527 (1710)
T ss_pred HhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHHHHHHHHHHhc
Confidence 344445666666655542 344555666666666544111 1111113566666655554 77777888899888754
Q ss_pred CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC--CHHHHHHH
Q 024712 95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--DHDAWREL 172 (263)
Q Consensus 95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l 172 (263)
+...++..+..+|...+++++|.++++..++.......+|..++..++.+++-+.|...+++|++.-|. ........
T Consensus 1528 -d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Iskf 1606 (1710)
T KOG1070|consen 1528 -DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKF 1606 (1710)
T ss_pred -chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHH
Confidence 334677888999999999999999999999988878899999999999999999999999999999998 67788888
Q ss_pred HHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC-cchhHHHhHHHHHhhc
Q 024712 173 AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-KNTKALFGICLVMFVC 251 (263)
Q Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~-~~~~~~~~l~~~~~~~ 251 (263)
|.+-++.|+.+.+...|+..+...|.-.+.|.-+.+.-.+.|+ .+-++..|++++.+.=. ...+++|-.++.+-+.
T Consensus 1607 AqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~---~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1607 AQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGD---IKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred HHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCC---HHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999 99999999999876432 5788888888777664
No 153
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=2e-09 Score=84.08 Aligned_cols=160 Identities=13% Similarity=0.076 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 024712 65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA 144 (263)
Q Consensus 65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 144 (263)
.+-.-+|.+++..|+|++|...|.-+.+...-+..++..++.+++..|.|.+|.....+ .|+++-....+-.+..+
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k----a~k~pL~~RLlfhlahk 133 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK----APKTPLCIRLLFHLAHK 133 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh----CCCChHHHHHHHHHHHH
Confidence 33444677777778888888877777775555666777778888877888777654443 35555444444444455
Q ss_pred cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHH
Q 024712 145 QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKK 224 (263)
Q Consensus 145 ~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~ 224 (263)
.++-++ +-.|...+. +..+-...||.+.+..-.|++|+++|++++..+|+....-..+|.||+++.- ++.+.+
T Consensus 134 lndEk~-~~~fh~~Lq---D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDY---ydvsqe 206 (557)
T KOG3785|consen 134 LNDEKR-ILTFHSSLQ---DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDY---YDVSQE 206 (557)
T ss_pred hCcHHH-HHHHHHHHh---hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcch---hhhHHH
Confidence 555433 333333333 2224456678888888889999999999999888888888888999999988 888888
Q ss_pred HHHHhhccCCC
Q 024712 225 YYASTIDLTGG 235 (263)
Q Consensus 225 ~~~~al~~~~~ 235 (263)
.+.--++..|+
T Consensus 207 vl~vYL~q~pd 217 (557)
T KOG3785|consen 207 VLKVYLRQFPD 217 (557)
T ss_pred HHHHHHHhCCC
Confidence 88888888775
No 154
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.13 E-value=4.6e-09 Score=72.39 Aligned_cols=85 Identities=16% Similarity=0.099 Sum_probs=72.6
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH---HHHH
Q 024712 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE---SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHK 136 (263)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~ 136 (263)
....+...|...++.|+|.+|++.|+.+...+|. ...+.+.++.+|+..+++++|+..+++.++++|.++ .+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 4556777899999999999999999999999984 557888999999999999999999999999999886 4777
Q ss_pred HHHHHHHHcCC
Q 024712 137 RRVAIAKAQGN 147 (263)
Q Consensus 137 ~l~~~~~~~g~ 147 (263)
..|.+++.+..
T Consensus 89 ~~gL~~~~~~~ 99 (142)
T PF13512_consen 89 MRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHhh
Confidence 78888777654
No 155
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.10 E-value=9.1e-10 Score=68.52 Aligned_cols=66 Identities=24% Similarity=0.247 Sum_probs=40.8
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHH
Q 024712 140 AIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLA 205 (263)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 205 (263)
.++...+++++|+.++++++..+|.++..|...|.++...|++++|+..++++++..|+++.+...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 455566666666666666666666666666666666666666666666666666666665554433
No 156
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.10 E-value=5.1e-10 Score=68.60 Aligned_cols=64 Identities=23% Similarity=0.231 Sum_probs=33.7
Q ss_pred HcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHH
Q 024712 110 AKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELA 173 (263)
Q Consensus 110 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 173 (263)
..|++++|+..|++++..+|++..++..++.++...|++++|...+++++..+|+++.++..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 3455555555555555555555555555555555555555555555555555555544444433
No 157
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=2.3e-08 Score=82.89 Aligned_cols=153 Identities=13% Similarity=0.035 Sum_probs=125.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhH
Q 024712 71 SIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPT 150 (263)
Q Consensus 71 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 150 (263)
...+...|+|++|.+...+++...|+++.+....-.++.+.++|++|+...+.-......+. ..+..+.|.+++++.++
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHHcccHHH
Confidence 33456789999999999999999999999999999999999999999855444332222222 22678999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC------------------------------CC-C
Q 024712 151 AIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ------------------------------PT-V 199 (263)
Q Consensus 151 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------------------------------p~-~ 199 (263)
|+..++ -.++.+..+....|.+++.+|+|++|...|+..++.+ |. +
T Consensus 98 alk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~s 174 (652)
T KOG2376|consen 98 ALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDS 174 (652)
T ss_pred HHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcch
Confidence 999999 4567777788889999999999999999999885432 22 3
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 024712 200 PLYHLAYADVLYTLGGVDNILLAKKYYASTI 230 (263)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~~~~A~~~~~~al 230 (263)
...+++.|.++...|+ |.+|++.+++++
T Consensus 175 yel~yN~Ac~~i~~gk---y~qA~elL~kA~ 202 (652)
T KOG2376|consen 175 YELLYNTACILIENGK---YNQAIELLEKAL 202 (652)
T ss_pred HHHHHHHHHHHHhccc---HHHHHHHHHHHH
Confidence 4578899999999999 999999999993
No 158
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.05 E-value=1.5e-08 Score=77.05 Aligned_cols=99 Identities=20% Similarity=0.207 Sum_probs=45.7
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHH
Q 024712 102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEI 175 (263)
Q Consensus 102 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~ 175 (263)
+..|.-++..|+|..|...|...+...|++ +.+++.||.+++.+|++++|...|..+++..|++ +++++.+|.+
T Consensus 145 Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~ 224 (262)
T COG1729 145 YNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVS 224 (262)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Confidence 334444444444444444444444444433 2344444444444444444444444444443333 3444444444
Q ss_pred HHhcccHHHHHHHHHHHHhhCCCCH
Q 024712 176 YVSLQMYKQAAFCYEELILSQPTVP 200 (263)
Q Consensus 176 ~~~~g~~~~A~~~~~~al~~~p~~~ 200 (263)
...+|+.++|...|+++++..|...
T Consensus 225 ~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 225 LGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 4444444444444444444444443
No 159
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=99.05 E-value=1.4e-07 Score=71.82 Aligned_cols=172 Identities=21% Similarity=0.186 Sum_probs=104.6
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHH-HHHHcCcHHHHHHHHHHHHhcCC---CCHHHH
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGI-LLEAKGLWAEAEKAYSSLLEDNP---LDPVLH 135 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~-~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~ 135 (263)
.+.....+...+......+++..++..+.......+.+.......+. ++...|+++.|...+.+++...| ......
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (291)
T COG0457 91 LPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEAL 170 (291)
T ss_pred ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHH
Confidence 34445555556666666666666666666666655554444444444 56666666666666666665554 233344
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhcCC-CHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 024712 136 KRRVAIAKAQGNFPTAIEWLNKYLETFMA-DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214 (263)
Q Consensus 136 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 214 (263)
...+..+...++++.++..+.+++...+. ....+..++..+...+.++.|+..+..++...|.....+..++..+...+
T Consensus 171 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (291)
T COG0457 171 LALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELG 250 (291)
T ss_pred HHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcC
Confidence 44455555666666666666666666666 46666666666666666666666666666666665555555555555555
Q ss_pred CCCcHHHHHHHHHHhhccCC
Q 024712 215 GVDNILLAKKYYASTIDLTG 234 (263)
Q Consensus 215 ~~~~~~~A~~~~~~al~~~~ 234 (263)
. ++.+...+.+++...|
T Consensus 251 ~---~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 251 R---YEEALEALEKALELDP 267 (291)
T ss_pred C---HHHHHHHHHHHHHhCc
Confidence 5 6666666666666655
No 160
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.05 E-value=1.1e-08 Score=69.30 Aligned_cols=96 Identities=20% Similarity=0.146 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC---CHHHHHHH
Q 024712 133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT---VPLYHLAY 206 (263)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 206 (263)
.+++.++.++-..|+.++|+..|++++...+.. ..+++.+|..+...|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 467889999999999999999999999976554 568899999999999999999999999999888 67788889
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHhhc
Q 024712 207 ADVLYTLGGVDNILLAKKYYASTID 231 (263)
Q Consensus 207 a~~~~~~g~~~~~~~A~~~~~~al~ 231 (263)
+.++...|+ .++|+..+..++.
T Consensus 82 Al~L~~~gr---~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGR---PKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCC---HHHHHHHHHHHHH
Confidence 999999999 9999999988775
No 161
>PLN03077 Protein ECB2; Provisional
Probab=99.04 E-value=8.3e-08 Score=87.69 Aligned_cols=155 Identities=15% Similarity=0.109 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHH---------
Q 024712 65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLH--------- 135 (263)
Q Consensus 65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~--------- 135 (263)
.++..+...|.+.|++++|.++|+++.+ .+...|..+...|...|++++|+..|+++....+.+...+
T Consensus 425 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~ 501 (857)
T PLN03077 425 VVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACAR 501 (857)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhh
Confidence 3444455566666666666666665432 2334455555566666666666666666654322122111
Q ss_pred --------------------------HHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHH
Q 024712 136 --------------------------KRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCY 189 (263)
Q Consensus 136 --------------------------~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 189 (263)
..+...|.+.|+.++|...|+.. +.+...|..+...|...|+.++|+.+|
T Consensus 502 ~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf 577 (857)
T PLN03077 502 IGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELF 577 (857)
T ss_pred hchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHH
Confidence 12234455555555555555543 345556666666666666666666666
Q ss_pred HHHHhh--CCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 024712 190 EELILS--QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI 230 (263)
Q Consensus 190 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al 230 (263)
++..+. .|+. ..+..+-..+...|. .++|..+|....
T Consensus 578 ~~M~~~g~~Pd~-~T~~~ll~a~~~~g~---v~ea~~~f~~M~ 616 (857)
T PLN03077 578 NRMVESGVNPDE-VTFISLLCACSRSGM---VTQGLEYFHSME 616 (857)
T ss_pred HHHHHcCCCCCc-ccHHHHHHHHhhcCh---HHHHHHHHHHHH
Confidence 665543 2332 233444445566666 666666666655
No 162
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.04 E-value=1.8e-08 Score=76.64 Aligned_cols=105 Identities=15% Similarity=0.171 Sum_probs=96.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC---HHHHHHHHH
Q 024712 67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPE---SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVA 140 (263)
Q Consensus 67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~ 140 (263)
.++.|..++..|+|..|...|...++.+|+ .+.+++.+|.+++.+|+++.|...|..+....|++ ++.++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 678899999999999999999999999996 46789999999999999999999999999987665 689999999
Q ss_pred HHHHcCChhHHHHHHHHHHHhcCCCHHHHHH
Q 024712 141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRE 171 (263)
Q Consensus 141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 171 (263)
+...+|+.++|...|+++++..|+...+-..
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999999999999999876543
No 163
>PLN03077 Protein ECB2; Provisional
Probab=99.03 E-value=4.3e-08 Score=89.56 Aligned_cols=162 Identities=9% Similarity=0.039 Sum_probs=119.7
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC--CHHHHHHH
Q 024712 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF--PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL--DPVLHKRR 138 (263)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l 138 (263)
+...|..+...+...|+.++|+.+|+++.+.. |+.. .+..+-..+...|.+++|..+|+.+.+..+- +...+..+
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l 631 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV-TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 34456667777888888888888888877643 4433 3444455677788888888888888744322 34567778
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCc
Q 024712 139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDN 218 (263)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 218 (263)
..++.+.|++++|...+++. ...|+ ..+|..|-..+...|+.+.+....++++++.|+++..+..++.+|...|+
T Consensus 632 v~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~--- 706 (857)
T PLN03077 632 VDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGK--- 706 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCC---
Confidence 88888888888888888765 24443 56677777777778888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHhh
Q 024712 219 ILLAKKYYASTI 230 (263)
Q Consensus 219 ~~~A~~~~~~al 230 (263)
+++|.+..+...
T Consensus 707 ~~~a~~vr~~M~ 718 (857)
T PLN03077 707 WDEVARVRKTMR 718 (857)
T ss_pred hHHHHHHHHHHH
Confidence 888887776654
No 164
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.02 E-value=2.8e-09 Score=66.32 Aligned_cols=64 Identities=28% Similarity=0.270 Sum_probs=36.7
Q ss_pred HHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHH
Q 024712 106 ILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAW 169 (263)
Q Consensus 106 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 169 (263)
.+|...+++++|++++++++..+|+++..+..+|.++...|++.+|+..++++++..|+++.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 3455555555555555555555555555555555555555555555555555555555555443
No 165
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.02 E-value=4.4e-07 Score=73.85 Aligned_cols=200 Identities=18% Similarity=0.167 Sum_probs=154.0
Q ss_pred CChhHHHHHHHHHhcCcccccccCcchHHHHHHHHH--H---HHHcCChHHHHHHHHHHHHhCCC----cHHHHHHHHHH
Q 024712 37 RRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSI--A---AMDCQCLDVAKDCIKVLQKQFPE----SKRVGRLEGIL 107 (263)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~--~---~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~~a~~ 107 (263)
++.+.+.+.-...+.. -+.......|.-|.-+-. + -+...+.+.+.++|+..+++-|+ .+.+|.+.|..
T Consensus 336 g~~~~Ire~yErAIan--vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~f 413 (677)
T KOG1915|consen 336 GDKDRIRETYERAIAN--VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQF 413 (677)
T ss_pred CCHHHHHHHHHHHHcc--CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4555565555555544 111111234443333222 1 24568999999999999999994 56789999999
Q ss_pred HHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHH
Q 024712 108 LEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAF 187 (263)
Q Consensus 108 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 187 (263)
..+..+...|...+-.++...|.+. .+.....+-.++++++.....|++.++..|.+..+|...|.+-..+|+.+.|..
T Consensus 414 eIRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRa 492 (677)
T KOG1915|consen 414 EIRQLNLTGARKILGNAIGKCPKDK-LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARA 492 (677)
T ss_pred HHHHcccHHHHHHHHHHhccCCchh-HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999999999999999999854 456677788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHH--HHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHH
Q 024712 188 CYEELILSQPTVPL--YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALF 242 (263)
Q Consensus 188 ~~~~al~~~p~~~~--~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~ 242 (263)
.|+-|+....-+.. .|...-..-...|. +++|...|++.|+.++...++.-+
T Consensus 493 ifelAi~qp~ldmpellwkaYIdFEi~~~E---~ekaR~LYerlL~rt~h~kvWisF 546 (677)
T KOG1915|consen 493 IFELAISQPALDMPELLWKAYIDFEIEEGE---FEKARALYERLLDRTQHVKVWISF 546 (677)
T ss_pred HHHHHhcCcccccHHHHHHHhhhhhhhcch---HHHHHHHHHHHHHhcccchHHHhH
Confidence 99999987655533 34445555666788 999999999999998853333333
No 166
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.02 E-value=2.6e-07 Score=75.17 Aligned_cols=168 Identities=14% Similarity=0.149 Sum_probs=142.1
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024712 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA 142 (263)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 142 (263)
....|..-|.--..++++..|..++++++..+..+..+|...+.+-........|..++.+++..-|.--..|+....+-
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 34455566666777889999999999999988888889999999999999999999999999999998888899888888
Q ss_pred HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHH
Q 024712 143 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLA 222 (263)
Q Consensus 143 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A 222 (263)
..+|+...|.+.|++.++..|+ ..+|......-...+..+.|...|++-+-.+|. ...|...+..-...|+ ..-|
T Consensus 152 E~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~---~~~a 226 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGN---VALA 226 (677)
T ss_pred HHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCc---HHHH
Confidence 8999999999999999998886 467877778888888889999999998888875 5678888888888888 8888
Q ss_pred HHHHHHhhccCCC
Q 024712 223 KKYYASTIDLTGG 235 (263)
Q Consensus 223 ~~~~~~al~~~~~ 235 (263)
...|++|++.-.+
T Consensus 227 R~VyerAie~~~~ 239 (677)
T KOG1915|consen 227 RSVYERAIEFLGD 239 (677)
T ss_pred HHHHHHHHHHhhh
Confidence 8888888876543
No 167
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.01 E-value=2.7e-10 Score=90.51 Aligned_cols=167 Identities=19% Similarity=0.122 Sum_probs=121.8
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCC------C
Q 024712 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ------FPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNP------L 130 (263)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p------~ 130 (263)
...+|.++|.+|+..++|.+|+++-..-+.. .-..+...-++|..+..+|.|++|+.+..+-+.... .
T Consensus 54 LSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~ 133 (639)
T KOG1130|consen 54 LSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVL 133 (639)
T ss_pred HHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHh
Confidence 4567889999999999999999875433221 123445556789999999999999999888776432 2
Q ss_pred CHHHHHHHHHHHHHcCC--------------------hhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcccHHH
Q 024712 131 DPVLHKRRVAIAKAQGN--------------------FPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQ 184 (263)
Q Consensus 131 ~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~ 184 (263)
...+++++|.+|...|+ ++.|.++|..-+++.... ..++-+||+.|+.+|+|++
T Consensus 134 e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ 213 (639)
T KOG1130|consen 134 ESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQ 213 (639)
T ss_pred hhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHH
Confidence 24588999999988774 333455555544443222 2356678888999999999
Q ss_pred HHHHHHHHHhhCCCC------HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712 185 AAFCYEELILSQPTV------PLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (263)
Q Consensus 185 A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~ 232 (263)
|+..-+.=+.+.... -.++.++|.++..+|+ ++.|+++|++.+.+
T Consensus 214 ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~---fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 214 AIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN---FELAIEHYKLTLNL 264 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc---cHhHHHHHHHHHHH
Confidence 999888777665433 2378889999999999 99999999887654
No 168
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.98 E-value=5.2e-08 Score=67.23 Aligned_cols=104 Identities=19% Similarity=0.142 Sum_probs=76.4
Q ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH---HHHH
Q 024712 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH---DAWR 170 (263)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~ 170 (263)
.+..++..|...+..|+|++|++.|+.+....|..+ .+...++.+++..+++++|+..+++.++++|.++ .+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 456677778888888888888888888888776553 5677788888888888888888888888887774 4567
Q ss_pred HHHHHHHhccc---------------HHHHHHHHHHHHhhCCCCH
Q 024712 171 ELAEIYVSLQM---------------YKQAAFCYEELILSQPTVP 200 (263)
Q Consensus 171 ~la~~~~~~g~---------------~~~A~~~~~~al~~~p~~~ 200 (263)
..|.+++.+.. ..+|...|++++...|++.
T Consensus 89 ~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 89 MRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 77777776655 5566666666666666553
No 169
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=1.7e-08 Score=72.90 Aligned_cols=111 Identities=26% Similarity=0.264 Sum_probs=90.8
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024712 102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDP-----VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY 176 (263)
Q Consensus 102 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 176 (263)
..-|.-++..|+|++|..-|..++..-|..+ ..+.+.|.+.++++.++.|+..+.++++++|....++...|.+|
T Consensus 99 K~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 99 KKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAY 178 (271)
T ss_pred HHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHH
Confidence 3457778888999999999999998887654 36677888888899999999999999999999888888889999
Q ss_pred HhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 024712 177 VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT 212 (263)
Q Consensus 177 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 212 (263)
.....|++|+..|++.++.+|....+...++++--.
T Consensus 179 ek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~ 214 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPSRREAREAIARLPPK 214 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHH
Confidence 888999999999999999998877665555544333
No 170
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.97 E-value=4.4e-07 Score=69.03 Aligned_cols=170 Identities=21% Similarity=0.191 Sum_probs=150.0
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024712 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQK--QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA 140 (263)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 140 (263)
........+..+...+++..+...+..... ..+.....+...+..+...+++..++..+..++...+.+.......+.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (291)
T COG0457 58 LAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLAL 137 (291)
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHH
Confidence 356667788888899999999999999987 678888899999999999999999999999999988877555555666
Q ss_pred -HHHHcCChhHHHHHHHHHHHhcC---CCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHhcCC
Q 024712 141 -IAKAQGNFPTAIEWLNKYLETFM---ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT-VPLYHLAYADVLYTLGG 215 (263)
Q Consensus 141 -~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~ 215 (263)
++...|+++.|...+.+++...| .........+..+...++++.|+..+.+++...+. ....+..++.++...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 89999999999999999988776 34566677777788899999999999999999999 68999999999999999
Q ss_pred CCcHHHHHHHHHHhhccCCC
Q 024712 216 VDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 216 ~~~~~~A~~~~~~al~~~~~ 235 (263)
+..|...+..++...|.
T Consensus 218 ---~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 218 ---YEEALEYYEKALELDPD 234 (291)
T ss_pred ---HHHHHHHHHHHHhhCcc
Confidence 99999999999999885
No 171
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.97 E-value=1.5e-09 Score=84.42 Aligned_cols=107 Identities=15% Similarity=0.086 Sum_probs=97.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 024712 67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG 146 (263)
Q Consensus 67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 146 (263)
....|..|+.+|.|++|+.+|.+.+..+|.++..+.+.+..|++...|..|...+..++.++.....+|.+.+..-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 34578899999999999999999999999999999999999999999999999999999999888889999999999999
Q ss_pred ChhHHHHHHHHHHHhcCCCHHHHHHHH
Q 024712 147 NFPTAIEWLNKYLETFMADHDAWRELA 173 (263)
Q Consensus 147 ~~~~A~~~~~~~l~~~p~~~~~~~~la 173 (263)
+..+|.+.++.++++.|.+.+..-.++
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a 206 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLA 206 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHH
Confidence 999999999999999999866554443
No 172
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.96 E-value=1.6e-07 Score=67.25 Aligned_cols=149 Identities=19% Similarity=0.092 Sum_probs=93.7
Q ss_pred HcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 024712 76 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLE-DNPLDPVLHKRRVAIAKAQGNFPTAIEW 154 (263)
Q Consensus 76 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 154 (263)
+.=|.+...+-..+.++.-|. ..-.+.+|..+...|++.+|...|++++. ..-+++..+..+++..+..+++..|...
T Consensus 68 q~ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~t 146 (251)
T COG4700 68 QKLDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQT 146 (251)
T ss_pred HhcChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHH
Confidence 333455444444444444443 23345567777777777777777777765 2345566667777777777777777777
Q ss_pred HHHHHHhcCCC--HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHh
Q 024712 155 LNKYLETFMAD--HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST 229 (263)
Q Consensus 155 ~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~a 229 (263)
+++..+.+|.. ++....+|..+..+|.+.+|...|+.++...|+ +......+..+..+|+ ..+|...+..+
T Consensus 147 Le~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr---~~ea~aq~~~v 219 (251)
T COG4700 147 LEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGR---LREANAQYVAV 219 (251)
T ss_pred HHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcc---hhHHHHHHHHH
Confidence 77777766543 455566677777777777777777777777665 4555566666777776 55555444443
No 173
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=1.1e-06 Score=66.45 Aligned_cols=134 Identities=16% Similarity=0.094 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh----c--CCCHHHHHH
Q 024712 99 RVGRLEGILLEAKGLWAEAEKAYSSLLEDN-PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET----F--MADHDAWRE 171 (263)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~----~--p~~~~~~~~ 171 (263)
.+.+.+..++...|+|.-....+.++++.+ |..+.....+|.+.++.|+.+.|..+++.+-+. + .....+..+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 466778888888999999999999999988 567778888999999999999999888854322 2 223445567
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 172 LAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 172 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
.+.++.-.+++..|...|.+++..+|.++.+..+.|-|+..+|+ ...|++..+.+++..|.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~---l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK---LKDALKQLEAMVQQDPR 318 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH---HHHHHHHHHHHhccCCc
Confidence 77888888999999999999999999999999999999999999 99999999999999987
No 174
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.92 E-value=4.3e-08 Score=75.18 Aligned_cols=171 Identities=13% Similarity=0.044 Sum_probs=140.2
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHH
Q 024712 74 AMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIE 153 (263)
Q Consensus 74 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 153 (263)
+.+..+|..|++++..-.+..|.+-..+..+|.+|....+|..|..+|++.-...|.........+..++..+.+..|+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 35678999999999999999999888999999999999999999999999999999998888889999999999999998
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccC
Q 024712 154 WLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT 233 (263)
Q Consensus 154 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~ 233 (263)
..........-.......-+.+.+..+++..+..+.++.- ..++.....+.|-+.++.|+ ++.|.+-|..+++..
T Consensus 100 V~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp--~en~Ad~~in~gCllykegq---yEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 100 VAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP--SENEADGQINLGCLLYKEGQ---YEAAVQKFQAALQVS 174 (459)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhcc--CCCccchhccchheeecccc---HHHHHHHHHHHHhhc
Confidence 8776553211112333445667778888888877665431 11457788899999999999 999999999999986
Q ss_pred CCcchhHHHhHHHHHhh
Q 024712 234 GGKNTKALFGICLVMFV 250 (263)
Q Consensus 234 ~~~~~~~~~~l~~~~~~ 250 (263)
. -++..-|.+++|.+.
T Consensus 175 G-yqpllAYniALaHy~ 190 (459)
T KOG4340|consen 175 G-YQPLLAYNLALAHYS 190 (459)
T ss_pred C-CCchhHHHHHHHHHh
Confidence 5 477788888888765
No 175
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.92 E-value=6.2e-08 Score=76.75 Aligned_cols=171 Identities=15% Similarity=0.155 Sum_probs=124.6
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--C----cHHHHHHHHHHHHHc-CcHHHHHHHHHHHHhcCC--CC-
Q 024712 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP--E----SKRVGRLEGILLEAK-GLWAEAEKAYSSLLEDNP--LD- 131 (263)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--~----~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~p--~~- 131 (263)
.....+...+.++.+ .++++|+.++++++..+- + -..++..+|.+|... |++++|+++|+++.+... +.
T Consensus 73 ~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~ 151 (282)
T PF14938_consen 73 EAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSP 151 (282)
T ss_dssp HHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 345566676666655 499999999999998653 2 245678899999998 999999999999998621 22
Q ss_pred ---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH
Q 024712 132 ---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL 201 (263)
Q Consensus 132 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 201 (263)
..++..++.++...|+|++|+..|++.....-.+ ...++..+.|++..|++..|...+++....+|....
T Consensus 152 ~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 152 HSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 2467889999999999999999999998753221 234567788999999999999999999999986633
Q ss_pred -----HHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCC
Q 024712 202 -----YHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 234 (263)
Q Consensus 202 -----~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~ 234 (263)
....+-.+ +..|+.+.+..|+..|.+...++|
T Consensus 232 s~E~~~~~~l~~A-~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 232 SREYKFLEDLLEA-YEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp SHHHHHHHHHHHH-HHTT-CCCHHHHCHHHTTSS---H
T ss_pred cHHHHHHHHHHHH-HHhCCHHHHHHHHHHHcccCccHH
Confidence 33333333 355677779999999998877765
No 176
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.91 E-value=1.2e-07 Score=74.33 Aligned_cols=192 Identities=15% Similarity=-0.007 Sum_probs=131.8
Q ss_pred HHhhhcCCC-ccHHHHHHHHHHhccCChhHHHHHHHHHhcC-----------cccccccCcchHHHHHHHHHHHHHcCCh
Q 024712 13 LENQVDNGG-GGAWEYLCLVKKLKVRRPDKVLRHGLSILND-----------PKKRSALGPDVWTLYEQVSIAAMDCQCL 80 (263)
Q Consensus 13 ~~~~~~~~~-~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~la~~~~~~~~~ 80 (263)
++.-+.+.. .+|+..+.--+ ...+..+..+++|.....- .......+.....++..++-+.+-.|.|
T Consensus 29 Ledfls~rDytGAislLefk~-~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKL-NLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhh-ccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 444444444 46676666444 2223334466666553211 0011111233456677888888999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 024712 81 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE 160 (263)
Q Consensus 81 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 160 (263)
.+|..+-. ..|+++.....+-.+..+.++-++-..+-+..-. ...-...++.+.+..-.|.+|+..|.+++.
T Consensus 108 ~eA~~~~~----ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 108 IEAKSIAE----KAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHHHh----hCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99987654 4577777777777777777776554443333222 223345677777777889999999999999
Q ss_pred hcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc
Q 024712 161 TFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL 213 (263)
Q Consensus 161 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 213 (263)
.+|.-...-..+|.||+++.-|+-+.+++.-.+...|+.+-+....+-..+.+
T Consensus 180 dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl 232 (557)
T KOG3785|consen 180 DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRL 232 (557)
T ss_pred cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhh
Confidence 99998888899999999999999999999999999999988877777666655
No 177
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.91 E-value=3.3e-08 Score=71.40 Aligned_cols=99 Identities=14% Similarity=0.056 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024712 134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH-----DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYAD 208 (263)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 208 (263)
.+..-|.-++..|+|.+|...|..+|...|..+ ..+.+.|.++.+++.++.|+..+.++++++|.+..++.+.|.
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAe 176 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAE 176 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHH
Confidence 345568888999999999999999999998874 356778999999999999999999999999999999999999
Q ss_pred HHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 209 VLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 209 ~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
+|.++.. +++|+..|.++++.+|.
T Consensus 177 ayek~ek---~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 177 AYEKMEK---YEEALEDYKKILESDPS 200 (271)
T ss_pred HHHhhhh---HHHHHHHHHHHHHhCcc
Confidence 9999999 99999999999999997
No 178
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.90 E-value=1.2e-08 Score=79.52 Aligned_cols=109 Identities=20% Similarity=0.132 Sum_probs=100.1
Q ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 024712 101 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ 180 (263)
Q Consensus 101 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g 180 (263)
....|.-|+.+|.|++|+.+|.+++..+|.++..+.+.+..|+++.++..|...+..++.++.....+|...|.....+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024712 181 MYKQAAFCYEELILSQPTVPLYHLAYADV 209 (263)
Q Consensus 181 ~~~~A~~~~~~al~~~p~~~~~~~~la~~ 209 (263)
...+|.+.++.++.+.|++......++.+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 99999999999999999987665554443
No 179
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=1.9e-06 Score=65.13 Aligned_cols=161 Identities=13% Similarity=-0.031 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 024712 65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA 144 (263)
Q Consensus 65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 144 (263)
.....-+.+++..|++++|.+.+... .+.++...-..++.++.+++-|...++++.+.+.+ ..+..++..+..
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~ 181 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVK 181 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHH
Confidence 34445677888999999999988763 34566667778899999999999999999987544 445556665554
Q ss_pred ----cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHH
Q 024712 145 ----QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNIL 220 (263)
Q Consensus 145 ----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~ 220 (263)
.+...+|.-+|+..-+..|..+.....++.+...+|+|++|...++.++..++++|..+.++-.+-...|. ..
T Consensus 182 la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gk---d~ 258 (299)
T KOG3081|consen 182 LATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGK---DA 258 (299)
T ss_pred HhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC---Ch
Confidence 24688999999999998888899999999999999999999999999999999999999999999999998 55
Q ss_pred HHHHHH-HHhhccCCC
Q 024712 221 LAKKYY-ASTIDLTGG 235 (263)
Q Consensus 221 ~A~~~~-~~al~~~~~ 235 (263)
++..-+ .+.....|.
T Consensus 259 ~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 259 EVTERNLSQLKLSHPE 274 (299)
T ss_pred HHHHHHHHHHHhcCCc
Confidence 555444 444444443
No 180
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.88 E-value=1.1e-06 Score=62.93 Aligned_cols=117 Identities=17% Similarity=0.067 Sum_probs=56.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcC
Q 024712 70 VSIAAMDCQCLDVAKDCIKVLQK-QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL--DPVLHKRRVAIAKAQG 146 (263)
Q Consensus 70 la~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g 146 (263)
++..+.+.|++.+|...|++++. .+.+++.....++...+..+++..|...+++..+-+|. .++....++..+..+|
T Consensus 95 La~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g 174 (251)
T COG4700 95 LANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQG 174 (251)
T ss_pred HHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcC
Confidence 44455555555555555554443 23344555555555555555555555555555554443 2334444555555555
Q ss_pred ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHH
Q 024712 147 NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAF 187 (263)
Q Consensus 147 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 187 (263)
++.+|...|+.++...|+ +.+....+..+.++|+.++|..
T Consensus 175 ~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 175 KYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred CchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHH
Confidence 555555555555554443 2333344444455554444433
No 181
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.87 E-value=1.5e-07 Score=69.02 Aligned_cols=134 Identities=19% Similarity=0.050 Sum_probs=111.5
Q ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024712 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY 176 (263)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 176 (263)
.+..++..|..|-..|-+.-|.-.|..++.+.|+-+.+++.+|..+...|+++.|.+.|+..++++|...-+..+.|..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 34567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHH-HHhhccCC
Q 024712 177 VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYY-ASTIDLTG 234 (263)
Q Consensus 177 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~-~~al~~~~ 234 (263)
+.-|++.-|.+-+.+-.+.+|++|.--..+-..-.+ -+ +.+|...+ +++-..+.
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k-~d---P~~A~tnL~qR~~~~d~ 198 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQK-LD---PKQAKTNLKQRAEKSDK 198 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhh-CC---HHHHHHHHHHHHHhccH
Confidence 999999999999999999999998643333222222 23 56665544 45555543
No 182
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.87 E-value=2.7e-06 Score=71.78 Aligned_cols=178 Identities=13% Similarity=0.079 Sum_probs=144.0
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-C---CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC------
Q 024712 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF-P---ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------ 131 (263)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------ 131 (263)
.....|..+|..|-..|+.+.|..+|++++... + +-..+|...|..-.+..+++.|..+.+++... |..
T Consensus 385 s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~y 463 (835)
T KOG2047|consen 385 SPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYY 463 (835)
T ss_pred ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhh
Confidence 456678889999999999999999999999864 3 34678888899999999999999999999764 322
Q ss_pred -------------HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC-
Q 024712 132 -------------PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP- 197 (263)
Q Consensus 132 -------------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p- 197 (263)
..+|..++......|-++.....|++.+.+.--.|.+..+.|..+.....++++.+.|++.+.+.+
T Consensus 464 d~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~ 543 (835)
T KOG2047|consen 464 DNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKW 543 (835)
T ss_pred cCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCC
Confidence 236777888888999999999999999999999999999999999999999999999999998864
Q ss_pred -CCHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHhhccCCCcchhHH
Q 024712 198 -TVPLYHLAYADVLYTL-GGVDNILLAKKYYASTIDLTGGKNTKAL 241 (263)
Q Consensus 198 -~~~~~~~~la~~~~~~-g~~~~~~~A~~~~~~al~~~~~~~~~~~ 241 (263)
.-.++|...-.-+... |. -..+.|...|++|++..|+...+..
T Consensus 544 p~v~diW~tYLtkfi~rygg-~klEraRdLFEqaL~~Cpp~~aKti 588 (835)
T KOG2047|consen 544 PNVYDIWNTYLTKFIKRYGG-TKLERARDLFEQALDGCPPEHAKTI 588 (835)
T ss_pred ccHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 4455665543333322 21 1289999999999999997444443
No 183
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.86 E-value=1.7e-08 Score=82.18 Aligned_cols=70 Identities=14% Similarity=-0.004 Sum_probs=65.6
Q ss_pred cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHH---HHHHHHHHHhcccHHHHHHHHHHHHhhC
Q 024712 127 DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDA---WRELAEIYVSLQMYKQAAFCYEELILSQ 196 (263)
Q Consensus 127 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~ 196 (263)
.+|+++..++++|..++..|++++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 478889999999999999999999999999999999999865 9999999999999999999999999973
No 184
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.86 E-value=2e-08 Score=81.81 Aligned_cols=70 Identities=17% Similarity=0.096 Sum_probs=66.3
Q ss_pred hCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHcCChhHHHHHHHHHHHhc
Q 024712 93 QFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV---LHKRRVAIAKAQGNFPTAIEWLNKYLETF 162 (263)
Q Consensus 93 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 162 (263)
.+|+++..++++|.+|+..|+|++|+..|+++++++|++.. +|+++|.+|..+|++++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 46899999999999999999999999999999999999985 49999999999999999999999999973
No 185
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.85 E-value=6.1e-07 Score=81.33 Aligned_cols=179 Identities=12% Similarity=0.100 Sum_probs=149.2
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CC----cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHH
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF-PE----SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL 134 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~----~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 134 (263)
+|+....|.+.....++.++.++|+++.++++..- +. ...+|..+-++...-|.-+.-.+.|+++.+.. +...+
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d~~~V 1532 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-DAYTV 1532 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-chHHH
Confidence 56666777777777788999999999999999853 32 22344444444555576677888999988753 34578
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHh
Q 024712 135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT--VPLYHLAYADVLYT 212 (263)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~ 212 (263)
+..|..+|...+.+++|.++++..++.+.+....|..+|..++.+++-+.|..++.+|++.-|. +.......|++-++
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 8899999999999999999999999999999999999999999999999999999999999997 67788899999999
Q ss_pred cCCCCcHHHHHHHHHHhhccCCC-cchhHHH
Q 024712 213 LGGVDNILLAKKYYASTIDLTGG-KNTKALF 242 (263)
Q Consensus 213 ~g~~~~~~~A~~~~~~al~~~~~-~~~~~~~ 242 (263)
.|+ .+.++..|+-.+...|. .+.|..|
T Consensus 1613 ~GD---aeRGRtlfEgll~ayPKRtDlW~VY 1640 (1710)
T KOG1070|consen 1613 YGD---AERGRTLFEGLLSAYPKRTDLWSVY 1640 (1710)
T ss_pred cCC---chhhHHHHHHHHhhCccchhHHHHH
Confidence 999 99999999999999997 5555444
No 186
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=2.7e-07 Score=71.94 Aligned_cols=157 Identities=11% Similarity=-0.102 Sum_probs=132.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-CCCC---HHHHHHHHHHHHHcC
Q 024712 71 SIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED-NPLD---PVLHKRRVAIAKAQG 146 (263)
Q Consensus 71 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~p~~---~~~~~~l~~~~~~~g 146 (263)
+......|++.+|...++++++.+|.+.-++..--..++.+|+...-...+++++.. +|+. ..+.-.++..+...|
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 444566789999999999999999999988888889999999999999999999987 6665 456667788889999
Q ss_pred ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHhcCCCCcHHHH
Q 024712 147 NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV----PLYHLAYADVLYTLGGVDNILLA 222 (263)
Q Consensus 147 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~~~~A 222 (263)
-+++|.+...++++++|.+..+...++.++...|++.++.+.+.+.-..-... .-.|...|.++...+. |+.|
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~ae---ye~a 266 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAE---YEKA 266 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccc---hhHH
Confidence 99999999999999999999999999999999999999999887754332211 1135567778888888 9999
Q ss_pred HHHHHHhh
Q 024712 223 KKYYASTI 230 (263)
Q Consensus 223 ~~~~~~al 230 (263)
.+.|.+-+
T Consensus 267 leIyD~ei 274 (491)
T KOG2610|consen 267 LEIYDREI 274 (491)
T ss_pred HHHHHHHH
Confidence 99998754
No 187
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.84 E-value=4.6e-08 Score=69.70 Aligned_cols=66 Identities=24% Similarity=0.221 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 024712 114 WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN----------FPTAIEWLNKYLETFMADHDAWRELAEIYVSL 179 (263)
Q Consensus 114 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 179 (263)
|+.|.+.++.....+|.+.+.+.+-|..+..+.+ +++|+.-|++++.++|+..++++.+|+++..+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 3445555555555555555555555544443321 23344444444444555555555555544433
No 188
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.80 E-value=1.2e-08 Score=81.46 Aligned_cols=179 Identities=16% Similarity=0.038 Sum_probs=131.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCc--------------------HHHHHHHHH
Q 024712 69 QVSIAAMDCQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLEAKGL--------------------WAEAEKAYS 122 (263)
Q Consensus 69 ~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~~~~~--------------------~~~A~~~~~ 122 (263)
++|..+--.|.|++|+.++.+-+.... ....+++++|.+|...|+ ++.|.++|.
T Consensus 100 NLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~ 179 (639)
T KOG1130|consen 100 NLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYM 179 (639)
T ss_pred cccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHH
Confidence 467777778999999998877766432 356788999999976543 345556666
Q ss_pred HHHhcCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcccHHHHHHHHH
Q 024712 123 SLLEDNPLD------PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYE 190 (263)
Q Consensus 123 ~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~ 190 (263)
.-+++.... ..++-++|..|+-+|+|+.|+..-+.-+.+.... -.++.++|+++.-.|+++.|++.|+
T Consensus 180 eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK 259 (639)
T KOG1130|consen 180 ENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYK 259 (639)
T ss_pred HHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHH
Confidence 555543222 2367788889999999999999888877664332 3467899999999999999999999
Q ss_pred HHHhhC----CCC--HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC-----cchhHHHhHHHHHhh
Q 024712 191 ELILSQ----PTV--PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-----KNTKALFGICLVMFV 250 (263)
Q Consensus 191 ~al~~~----p~~--~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~-----~~~~~~~~l~~~~~~ 250 (263)
..+.+. ... ...++.||..|....+ +++|+.++.+-+.+... ...++.|.|..+...
T Consensus 260 ~tl~LAielg~r~vEAQscYSLgNtytll~e---~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a 327 (639)
T KOG1130|consen 260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKE---VQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA 327 (639)
T ss_pred HHHHHHHHhcchhHHHHHHHHhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 877542 222 4568889999999999 99999999987765321 356666666665544
No 189
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=1.5e-06 Score=65.72 Aligned_cols=135 Identities=14% Similarity=0.072 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC------CCCHHHHHHH
Q 024712 66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQF-PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN------PLDPVLHKRR 138 (263)
Q Consensus 66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------p~~~~~~~~l 138 (263)
+...++.++...|+|.-....+++.++.+ |.++.....+|.+..+.|+.+.|..+++++-+.+ .....+..+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34456777788899999999999999998 5788889999999999999999999999665432 2234577788
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH
Q 024712 139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP 200 (263)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 200 (263)
+.++.-.+++..|...+.+++..+|.++.+..+.|.|....|+..+|++.++.++...|...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 88899999999999999999999999999999999999999999999999999999999753
No 190
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.80 E-value=1.5e-07 Score=67.08 Aligned_cols=67 Identities=12% Similarity=-0.055 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC----------cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 024712 80 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG----------LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG 146 (263)
Q Consensus 80 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 146 (263)
++.|++.++.....+|.+++.++.-|.++..+. -+++|+.-|++++.++|+..+++..+|.++...+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 567888888888888888888888887776552 3466777777888888888888888888887664
No 191
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.78 E-value=4.8e-07 Score=71.49 Aligned_cols=131 Identities=11% Similarity=0.059 Sum_probs=58.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 024712 68 EQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA-KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG 146 (263)
Q Consensus 68 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 146 (263)
..+.....+.+..+.|+.+|.++.+..+....++...|.+... .++.+.|..+|+.+++..|.+...|..+...+...|
T Consensus 5 i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~ 84 (280)
T PF05843_consen 5 IQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLN 84 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhC
Confidence 3333444444445555555555543333344444444444333 233333555555555555555555555555555555
Q ss_pred ChhHHHHHHHHHHHhcCCCH---HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC
Q 024712 147 NFPTAIEWLNKYLETFMADH---DAWRELAEIYVSLQMYKQAAFCYEELILSQPT 198 (263)
Q Consensus 147 ~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 198 (263)
+.+.|...|++++..-|... .+|......-...|+.+....+.+++.+..|.
T Consensus 85 d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 85 DINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp -HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 55555555555554433332 34444444444445555555555555544444
No 192
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.78 E-value=4e-06 Score=63.45 Aligned_cols=136 Identities=16% Similarity=0.224 Sum_probs=115.3
Q ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHH---HHH
Q 024712 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD---AWR 170 (263)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~---~~~ 170 (263)
.+..++.-|....+.|+|++|+..|+++.+.+|..+ .+...++..+++.+++++|+..+++-+..+|+++. +++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 567788899999999999999999999999988775 57888999999999999999999999999998854 566
Q ss_pred HHHHHHHhc--------ccHHHHHHHHHHHHhhCCCCHH-----------------HHHHHHHHHHhcCCCCcHHHHHHH
Q 024712 171 ELAEIYVSL--------QMYKQAAFCYEELILSQPTVPL-----------------YHLAYADVLYTLGGVDNILLAKKY 225 (263)
Q Consensus 171 ~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~-----------------~~~~la~~~~~~g~~~~~~~A~~~ 225 (263)
..|.+++.. .-..+|+..|++.+...|++.- --..+|..|.+.|. +-.|+..
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~---~~AA~nR 189 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGA---YVAAINR 189 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC---hHHHHHH
Confidence 677776543 3456889999999999997732 22457889999999 9999999
Q ss_pred HHHhhccCCC
Q 024712 226 YASTIDLTGG 235 (263)
Q Consensus 226 ~~~al~~~~~ 235 (263)
++.+++.-|+
T Consensus 190 ~~~v~e~y~~ 199 (254)
T COG4105 190 FEEVLENYPD 199 (254)
T ss_pred HHHHHhcccc
Confidence 9999998775
No 193
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.78 E-value=1.6e-08 Score=63.73 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHH
Q 024712 169 WRELAEIYVSLQMYKQAAFCYEELI 193 (263)
Q Consensus 169 ~~~la~~~~~~g~~~~A~~~~~~al 193 (263)
+..+|.++...|++++|+.++++++
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444444444444444444
No 194
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.76 E-value=1.1e-06 Score=59.18 Aligned_cols=96 Identities=19% Similarity=-0.001 Sum_probs=52.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH----HHHHHHHHHH
Q 024712 67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP----VLHKRRVAIA 142 (263)
Q Consensus 67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~ 142 (263)
++..|..+...|+.+.|++.|.+++...|..+.++.+.+..+.-.|+.++|+..+.+++++..... .++...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 333455555555555555555555555555555555555555555555555555555555543221 2445555555
Q ss_pred HHcCChhHHHHHHHHHHHhc
Q 024712 143 KAQGNFPTAIEWLNKYLETF 162 (263)
Q Consensus 143 ~~~g~~~~A~~~~~~~l~~~ 162 (263)
..+|+.+.|...|+.+-++.
T Consensus 126 Rl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHhCchHHHHHhHHHHHHhC
Confidence 55555555555555555443
No 195
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.74 E-value=7.4e-07 Score=59.98 Aligned_cols=99 Identities=21% Similarity=0.133 Sum_probs=87.9
Q ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC----HHHHHHHHHHH
Q 024712 101 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD----HDAWRELAEIY 176 (263)
Q Consensus 101 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~ 176 (263)
+-..|..+...|+.+.|++.|.+++.+-|..+.++++.+..+.-+|+.++|+..+++++++.... -.++...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 34568888899999999999999999999999999999999999999999999999999986544 34678899999
Q ss_pred HhcccHHHHHHHHHHHHhhCCCC
Q 024712 177 VSLQMYKQAAFCYEELILSQPTV 199 (263)
Q Consensus 177 ~~~g~~~~A~~~~~~al~~~p~~ 199 (263)
..+|+-+.|...|+.+-++...+
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCCHH
Confidence 99999999999999887776544
No 196
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.71 E-value=1.2e-06 Score=76.16 Aligned_cols=137 Identities=17% Similarity=0.162 Sum_probs=119.9
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHH
Q 024712 74 AMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIE 153 (263)
Q Consensus 74 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 153 (263)
..+.+++..|+..+.+++..+|+.+.+....|.+++++|+.++|..+++..-...+++...+-.+..+|..+|+.++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 45779999999999999999999999999999999999999999999998888888888889999999999999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 024712 154 WLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLY 211 (263)
Q Consensus 154 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 211 (263)
+|++++..+|+ ......+-.+|.+.+.|.+-.+.--+..+..|.++..++....+.+
T Consensus 99 ~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slil 155 (932)
T KOG2053|consen 99 LYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLIL 155 (932)
T ss_pred HHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHH
Confidence 99999999999 8888899999999999987777766677778877665444443333
No 197
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.71 E-value=9.8e-07 Score=69.74 Aligned_cols=133 Identities=15% Similarity=0.100 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 024712 100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA-QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS 178 (263)
Q Consensus 100 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 178 (263)
+|..+.....+.+..+.|..+|.++....+....+|...|.+.+. .++.+.|..+|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 566666777777778888888888886666667788888888666 4555558888888888888888888888888888
Q ss_pred cccHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 179 LQMYKQAAFCYEELILSQPTVP---LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 179 ~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
.|+.+.|..+|++++..-|... .+|......-...|+ .+...+.+.++.+..|.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gd---l~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGD---LESVRKVEKRAEELFPE 139 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHTTT
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHhhh
Confidence 8888888888888887766554 467777777778888 88888888888777765
No 198
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.71 E-value=1.6e-08 Score=63.67 Aligned_cols=67 Identities=24% Similarity=0.331 Sum_probs=56.0
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh---CC-CC---HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712 163 MADHDAWRELAEIYVSLQMYKQAAFCYEELILS---QP-TV---PLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (263)
Q Consensus 163 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p-~~---~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~ 232 (263)
|+-..++..+|.+|..+|++++|+.+|++++++ .+ ++ ..++.++|.++...|+ +++|++++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~---~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD---YEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhh
Confidence 445678899999999999999999999999965 22 22 4478899999999999 99999999999876
No 199
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.68 E-value=1.6e-05 Score=64.32 Aligned_cols=191 Identities=16% Similarity=0.016 Sum_probs=121.9
Q ss_pred hhhHHHHHHHHhhhcCCCc----cHHHHHHHHHHhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHH---
Q 024712 4 KTEETQLNRLENQVDNGGG----GAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMD--- 76 (263)
Q Consensus 4 ~~~~~~l~~~~~~~~~~~~----~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--- 76 (263)
++....|.+++..+++... --+..+-.+ ++..+.+.++.+...+-..+ ...-++...+-.+.|.++.+
T Consensus 120 ~~l~~~L~~i~~rLd~~~~ls~div~~lllSy--RdiqdydamI~Lve~l~~~p---~~~~~~~~~i~~~yafALnRrn~ 194 (374)
T PF13281_consen 120 KELAKELRRIRQRLDDPELLSPDIVINLLLSY--RDIQDYDAMIKLVETLEALP---TCDVANQHNIKFQYAFALNRRNK 194 (374)
T ss_pred HHHHHHHHHHHHhhCCHhhcChhHHHHHHHHh--hhhhhHHHHHHHHHHhhccC---ccchhcchHHHHHHHHHHhhccc
Confidence 4566778888888876331 123333333 44567888888888875441 11134566777788888888
Q ss_pred cCChHHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHc---------CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 024712 77 CQCLDVAKDCIKV-LQKQFPESKRVGRLEGILLEAK---------GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG 146 (263)
Q Consensus 77 ~~~~~~A~~~~~~-~~~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 146 (263)
.|+.++|+.++.. +....+.+++.+...|.+|... ...++|+..|.++.+.+|+.. .-.+++.++...|
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y-~GIN~AtLL~~~g 273 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY-SGINAATLLMLAG 273 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc-chHHHHHHHHHcC
Confidence 8999999999999 4455567899999999988653 357899999999999997544 3456677777777
Q ss_pred ChhHHHHHHHHHH-H-------h----cCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH
Q 024712 147 NFPTAIEWLNKYL-E-------T----FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP 200 (263)
Q Consensus 147 ~~~~A~~~~~~~l-~-------~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 200 (263)
...+....+++.. . . .-.+-+..-.++.+....|++++|+..+++++.+.|..+
T Consensus 274 ~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 274 HDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred CcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 5443332222222 0 0 111223333455555566666666666666666655443
No 200
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.66 E-value=4.7e-06 Score=76.91 Aligned_cols=167 Identities=14% Similarity=0.038 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC------H
Q 024712 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK-----RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------P 132 (263)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~ 132 (263)
..+...++..+...|++++|...++.++...|... .+...+|.++...|++++|...+++++...... .
T Consensus 452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~ 531 (903)
T PRK04841 452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYAL 531 (903)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 33444567788889999999999999988655322 345678888999999999999999998753221 2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC-----C
Q 024712 133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--------DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT-----V 199 (263)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~ 199 (263)
.++..++.++...|++++|...+++++..... ....+..+|.++...|++++|...+.+++..... .
T Consensus 532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 611 (903)
T PRK04841 532 WSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQ 611 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHH
Confidence 35677899999999999999999999876321 1234557889999999999999999999875321 2
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccC
Q 024712 200 PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLT 233 (263)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~ 233 (263)
...+..+|.++...|+ +++|...+.++..+.
T Consensus 612 ~~~~~~la~~~~~~G~---~~~A~~~l~~a~~~~ 642 (903)
T PRK04841 612 LQCLAMLAKISLARGD---LDNARRYLNRLENLL 642 (903)
T ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHH
Confidence 4456678999999999 999999999987653
No 201
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.63 E-value=1.5e-06 Score=68.55 Aligned_cols=185 Identities=14% Similarity=0.064 Sum_probs=139.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC------
Q 024712 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES-----KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------ 131 (263)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------ 131 (263)
...++.+++..+-...++.+++.+-+.-+...... ..+...++..+..++.|+++++.|++++.....+
T Consensus 82 ~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LE 161 (518)
T KOG1941|consen 82 LLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLE 161 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceee
Confidence 45567777777777778888887776666543322 2466778999999999999999999999864332
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC----C------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhC-----
Q 024712 132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA----D------HDAWRELAEIYVSLQMYKQAAFCYEELILSQ----- 196 (263)
Q Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~----~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----- 196 (263)
..+...+|.++....++++|..+..++.++..+ + ..+.+.++..+..+|+...|.++.+++.++.
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd 241 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD 241 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 247788999999999999999999999886432 2 2356778899999999999999999998763
Q ss_pred -CCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC-----cchhHHHhHHHHHhh
Q 024712 197 -PTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-----KNTKALFGICLVMFV 250 (263)
Q Consensus 197 -p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~-----~~~~~~~~l~~~~~~ 250 (263)
+.......-+|++|...|+ .+.|..-|+.+....-+ ..+.++-|.+.|...
T Consensus 242 ra~~arc~~~~aDIyR~~gd---~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~ 298 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGD---LERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLET 298 (518)
T ss_pred hHHHHHHHHHHHHHHHhccc---HhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 2334567789999999999 99999999998765332 345566666666543
No 202
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.62 E-value=2e-06 Score=67.91 Aligned_cols=220 Identities=14% Similarity=0.016 Sum_probs=157.0
Q ss_pred ccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CcHHHHHHHHHHH
Q 024712 35 KVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILL 108 (263)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~ 108 (263)
...+.+.++..|...+.+. ........++..+..+..+.|.+++++..--..++..- -...++..++..+
T Consensus 18 ~s~~~~~al~~w~~~L~~l----~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~ 93 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKL----SDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSN 93 (518)
T ss_pred cCchHHHHHHHHHHHHHHH----HHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566777777766551 11123455566677777888888887765444433221 1235677889999
Q ss_pred HHcCcHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHH
Q 024712 109 EAKGLWAEAEKAYSSLLEDNPLDP-----VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYV 177 (263)
Q Consensus 109 ~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~ 177 (263)
...-++.+++.+-+..+.+-...+ .....++..+...+.++++++.|++++.....+ ..++..||.++-
T Consensus 94 e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~ 173 (518)
T KOG1941|consen 94 EKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFA 173 (518)
T ss_pred HHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHH
Confidence 999999999999998888643332 466778888899999999999999999875443 246788999999
Q ss_pred hcccHHHHHHHHHHHHhhCC----CCH------HHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHH
Q 024712 178 SLQMYKQAAFCYEELILSQP----TVP------LYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLV 247 (263)
Q Consensus 178 ~~g~~~~A~~~~~~al~~~p----~~~------~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~ 247 (263)
...++++|.-+..++..+.. .+. .+.+.++..+...|. .-.|.++.+++.++.-..--++.+..+++
T Consensus 174 ~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~---LgdA~e~C~Ea~klal~~Gdra~~arc~~ 250 (518)
T KOG1941|consen 174 QLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGR---LGDAMECCEEAMKLALQHGDRALQARCLL 250 (518)
T ss_pred HHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 99999999999999887643 222 267788999999999 88899999888776432234667777777
Q ss_pred Hhh-------chhhHHHHhhc
Q 024712 248 MFV-------CHSTTYERAEQ 261 (263)
Q Consensus 248 ~~~-------~~~~~~~~~~~ 261 (263)
+.+ .--.+++|.||
T Consensus 251 ~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 251 CFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHhcccHhHHHHHHHH
Confidence 766 11345666665
No 203
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.61 E-value=9.4e-06 Score=74.94 Aligned_cols=165 Identities=12% Similarity=0.049 Sum_probs=127.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH-----
Q 024712 67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPE---------SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP----- 132 (263)
Q Consensus 67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~----- 132 (263)
....+..+...|++++|...+..+....+. ...+...++.++...|++++|...+++++...+...
T Consensus 412 ~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 491 (903)
T PRK04841 412 VLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRI 491 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHH
Confidence 345677778889999999999888765331 123445678888899999999999999988544322
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC--------
Q 024712 133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPT-------- 198 (263)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------- 198 (263)
.+...+|.++...|++++|...+++++...... ..++..+|.++...|++++|...+.+++.....
T Consensus 492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 571 (903)
T PRK04841 492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM 571 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence 355678889999999999999999998764321 235567899999999999999999999875221
Q ss_pred CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCC
Q 024712 199 VPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 234 (263)
Q Consensus 199 ~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~ 234 (263)
....+..+|.+++..|+ +++|...+.+++....
T Consensus 572 ~~~~~~~la~~~~~~G~---~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 572 HEFLLRIRAQLLWEWAR---LDEAEQCARKGLEVLS 604 (903)
T ss_pred HHHHHHHHHHHHHHhcC---HHHHHHHHHHhHHhhh
Confidence 12345678999999999 9999999999987643
No 204
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=1.4e-07 Score=69.97 Aligned_cols=91 Identities=14% Similarity=0.019 Sum_probs=58.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh
Q 024712 70 VSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP 149 (263)
Q Consensus 70 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 149 (263)
.|..++....|..|+..|.+++..+|..+..+.+.+.++++..+|+.+....+++++++|+....++.+|........++
T Consensus 16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence 35555555666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHH
Q 024712 150 TAIEWLNKYLE 160 (263)
Q Consensus 150 ~A~~~~~~~l~ 160 (263)
+|+..+.++..
T Consensus 96 eaI~~Lqra~s 106 (284)
T KOG4642|consen 96 EAIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHHH
Confidence 66666666644
No 205
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=1.6e-05 Score=59.13 Aligned_cols=170 Identities=16% Similarity=0.072 Sum_probs=114.6
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-----Cc-HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH---
Q 024712 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP-----ES-KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP--- 132 (263)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-----~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~--- 132 (263)
+-.+.+.+-+..|--.++++.|-..|.++-+.+- ++ ...+...+.+| +.++..+|+.++++++++..+-.
T Consensus 32 eAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~ 110 (288)
T KOG1586|consen 32 EAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFT 110 (288)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHH
Confidence 3455566666666667777777777776665432 22 23334444444 44588899999998888644332
Q ss_pred ---HHHHHHHHHHHHc-CChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH-
Q 024712 133 ---VLHKRRVAIAKAQ-GNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL- 201 (263)
Q Consensus 133 ---~~~~~l~~~~~~~-g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~- 201 (263)
..+..+|.+|... .++++|+.+|+.+-+....+ -..+...+..-...++|.+|+..|+++....-+++.
T Consensus 111 ~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LL 190 (288)
T KOG1586|consen 111 MAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLL 190 (288)
T ss_pred HHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 2344677777665 78889999999888765443 234556677777789999999999988876655543
Q ss_pred ------HHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 202 ------YHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 202 ------~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
.++.-|.|++...+ .-.+...+++..+++|.
T Consensus 191 Kys~KdyflkAgLChl~~~D---~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 191 KYSAKDYFLKAGLCHLCKAD---EVNAQRALEKYQELDPA 227 (288)
T ss_pred HhHHHHHHHHHHHHhHhccc---HHHHHHHHHHHHhcCCc
Confidence 44556778888788 66677777777778886
No 206
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.58 E-value=2.2e-05 Score=63.55 Aligned_cols=169 Identities=14% Similarity=-0.002 Sum_probs=127.3
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHH---cCcHHHHHHHHHH-HHhcCCCCHHH
Q 024712 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ----FPESKRVGRLEGILLEA---KGLWAEAEKAYSS-LLEDNPLDPVL 134 (263)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~-~~~~~p~~~~~ 134 (263)
..++..++-.+|.+..+|+.-+++.+.+-.. .++.+.+...+|.++-+ .|+.++|+..+.. +....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4566677888899999999999998887776 34677888899999999 8999999999999 55566778899
Q ss_pred HHHHHHHHHHc---------CChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHH--------hh--
Q 024712 135 HKRRVAIAKAQ---------GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELI--------LS-- 195 (263)
Q Consensus 135 ~~~l~~~~~~~---------g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~-- 195 (263)
+..+|.+|... ...++|+.+|.++.+.+|+.- .=.+++.++...|.-.+...-..+.. +.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y-~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY-SGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc-chHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 99999888642 247899999999999996543 33566667766665332221111111 11
Q ss_pred --CCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 196 --QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 196 --~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
.-.+......++.+....|+ +++|.+.+++++.+.|+
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d---~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGD---YEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCC---HHHHHHHHHHHhhcCCc
Confidence 12345566778899999999 99999999999999875
No 207
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.56 E-value=1.8e-07 Score=51.60 Aligned_cols=40 Identities=28% Similarity=0.284 Sum_probs=20.8
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 024712 168 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYA 207 (263)
Q Consensus 168 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 207 (263)
+|..+|..|...|++++|+.+|+++++.+|+++.++..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4445555555555555555555555555555555554444
No 208
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=6e-05 Score=57.30 Aligned_cols=143 Identities=20% Similarity=0.153 Sum_probs=116.3
Q ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024712 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY 176 (263)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 176 (263)
+......-|.++...|++++|+..... ..+.++...-..++.+..+.+-|.+.+++..+++.+ ..+..||..+
T Consensus 107 n~i~~l~aa~i~~~~~~~deAl~~~~~-----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~aw 179 (299)
T KOG3081|consen 107 NLIDLLLAAIIYMHDGDFDEALKALHL-----GENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAW 179 (299)
T ss_pred hHHHHHHhhHHhhcCCChHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHH
Confidence 334556667889999999999887766 344566666678888999999999999999887644 3445566655
Q ss_pred Hh----cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 177 VS----LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 177 ~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
.. .+.+.+|.-+|++.-...|..+......+.|...+|+ +++|...++.++..+++ ++..+.+++.|...
T Consensus 180 v~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~---~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~ 253 (299)
T KOG3081|consen 180 VKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR---YEEAESLLEEALDKDAK-DPETLANLIVLALH 253 (299)
T ss_pred HHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC---HHHHHHHHHHHHhccCC-CHHHHHHHHHHHHH
Confidence 44 3578999999999998888889999999999999999 99999999999999986 88888888888654
No 209
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.53 E-value=3.3e-07 Score=50.59 Aligned_cols=42 Identities=24% Similarity=0.226 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 024712 133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE 174 (263)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 174 (263)
.++..+|..+...|++++|+..|+++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 345556666666666666666666666666666666665553
No 210
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=3e-05 Score=59.91 Aligned_cols=156 Identities=14% Similarity=0.033 Sum_probs=117.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCC
Q 024712 69 QVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP-VLHKRRVAIAKAQGN 147 (263)
Q Consensus 69 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~ 147 (263)
..+......|++.+|...|..++...|.+..+...++.++...|+.+.|...+...-....... ........++.....
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc
Confidence 3456678899999999999999999999999999999999999999999887766443322221 111122234444444
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 024712 148 FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP--TVPLYHLAYADVLYTLGGVDNILLAKKY 225 (263)
Q Consensus 148 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~~~~A~~~ 225 (263)
..+ ...+++.+..+|++..+.+.+|..+...|+.+.|.+.+-..++.+- .+..+...+-.++...|. -+.+...
T Consensus 219 ~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~---~Dp~~~~ 294 (304)
T COG3118 219 TPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP---ADPLVLA 294 (304)
T ss_pred CCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC---CCHHHHH
Confidence 443 3456777788999999999999999999999999999998887764 446677788888888885 4445554
Q ss_pred HHH
Q 024712 226 YAS 228 (263)
Q Consensus 226 ~~~ 228 (263)
|++
T Consensus 295 ~RR 297 (304)
T COG3118 295 YRR 297 (304)
T ss_pred HHH
Confidence 544
No 211
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=4e-07 Score=67.66 Aligned_cols=94 Identities=14% Similarity=0.002 Sum_probs=86.1
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhccc
Q 024712 102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQM 181 (263)
Q Consensus 102 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 181 (263)
...|..++....|..|+..|.+++..+|..+..+.+.+.++++..+++.+.....+++++.|+.....+.+|.+......
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence 34577788888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 024712 182 YKQAAFCYEELILS 195 (263)
Q Consensus 182 ~~~A~~~~~~al~~ 195 (263)
|++|+.+++++..+
T Consensus 94 ~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSL 107 (284)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999999999654
No 212
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.48 E-value=3.2e-05 Score=63.79 Aligned_cols=174 Identities=14% Similarity=0.082 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHh-------cCC---------
Q 024712 66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLE-------DNP--------- 129 (263)
Q Consensus 66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-------~~p--------- 129 (263)
.-..+.....+..+.+.-++.-.++++.+|+.+.++..++.-.. .-..+|..+++++++ .+.
T Consensus 170 ~Aq~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~ 247 (539)
T PF04184_consen 170 PAQEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEA--STIVEAEELLRQAVKAGEASLGKSQFLQHHGHFW 247 (539)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccc--cCHHHHHHHHHHHHHHHHHhhchhhhhhcccchh
Confidence 33345666788899999999999999999999999888775322 223455555555544 210
Q ss_pred -------CC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHhcccHHHHHHHHHHHHhh-CC
Q 024712 130 -------LD--PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--DHDAWRELAEIYVSLQMYKQAAFCYEELILS-QP 197 (263)
Q Consensus 130 -------~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p 197 (263)
.+ ..+...++.+..+.|+.++|++.++..++.+|. ...+..+|..++...+.|.++..++.+.=+. -|
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP 327 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC
Confidence 01 235678999999999999999999999998876 4568899999999999999999998886433 24
Q ss_pred CCHHHHHHHHHHHHhc-CC------------CCcHHHHHHHHHHhhccCCCcchhHHH
Q 024712 198 TVPLYHLAYADVLYTL-GG------------VDNILLAKKYYASTIDLTGGKNTKALF 242 (263)
Q Consensus 198 ~~~~~~~~la~~~~~~-g~------------~~~~~~A~~~~~~al~~~~~~~~~~~~ 242 (263)
......+.-|-+-.+. ++ ...-..|.+...+|++.||. -+..+.
T Consensus 328 kSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH-Vp~YLL 384 (539)
T PF04184_consen 328 KSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH-VPKYLL 384 (539)
T ss_pred chHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC-Cchhhh
Confidence 5555554444333221 22 11124577899999999996 444433
No 213
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.46 E-value=8.2e-05 Score=63.18 Aligned_cols=174 Identities=14% Similarity=0.084 Sum_probs=144.0
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CC-----CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC--
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ-FP-----ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD-- 131 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~p-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-- 131 (263)
+|.+...|..... +..|+..+-+..|..++.. +| .-...|..+|..|...|+.+.|...|+++....-..
T Consensus 345 n~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~ 422 (835)
T KOG2047|consen 345 NPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE 422 (835)
T ss_pred CCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH
Confidence 6666666665544 4468888889999888874 45 234678899999999999999999999999865322
Q ss_pred --HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC------------------CHHHHHHHHHHHHhcccHHHHHHHHHH
Q 024712 132 --PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA------------------DHDAWRELAEIYVSLQMYKQAAFCYEE 191 (263)
Q Consensus 132 --~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~------------------~~~~~~~la~~~~~~g~~~~A~~~~~~ 191 (263)
..+|..-|..-....+++.|+.+++++...... +..+|..++......|-++....+|++
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 358888888888899999999999998754221 256788999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcch
Q 024712 192 LILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNT 238 (263)
Q Consensus 192 al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~ 238 (263)
.+.+.--.|....+.|..+....- +++|.+.|++.+.+.+-+.+
T Consensus 503 iidLriaTPqii~NyAmfLEeh~y---feesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 503 IIDLRIATPQIIINYAMFLEEHKY---FEESFKAYERGISLFKWPNV 546 (835)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhHH---HHHHHHHHHcCCccCCCccH
Confidence 999999999999999999999998 99999999999999765343
No 214
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.43 E-value=3.1e-06 Score=69.28 Aligned_cols=147 Identities=14% Similarity=0.052 Sum_probs=119.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHH-HhcCCC--------CHHHHHHHH
Q 024712 69 QVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSL-LEDNPL--------DPVLHKRRV 139 (263)
Q Consensus 69 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-~~~~p~--------~~~~~~~l~ 139 (263)
.....++...+...+..-.+.+.....+++......+..++..|++.+|.+.+... +...|. ....|+++|
T Consensus 211 ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlG 290 (696)
T KOG2471|consen 211 YKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLG 290 (696)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcc
Confidence 34455566777777877777777777788999999999999999999999877654 223333 223578999
Q ss_pred HHHHHcCChhHHHHHHHHHHHh---------c---------CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH
Q 024712 140 AIAKAQGNFPTAIEWLNKYLET---------F---------MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL 201 (263)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~l~~---------~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 201 (263)
.+++..|.+.-+..+|.++++. . ..+-.+.++.|..|...|+.-.|.+||.++....-.+|.
T Consensus 291 cIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPr 370 (696)
T KOG2471|consen 291 CIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPR 370 (696)
T ss_pred eEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcH
Confidence 9999999999999999999961 1 123567899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 024712 202 YHLAYADVLYTLGG 215 (263)
Q Consensus 202 ~~~~la~~~~~~g~ 215 (263)
.|.++|+|.....+
T Consensus 371 lWLRlAEcCima~~ 384 (696)
T KOG2471|consen 371 LWLRLAECCIMALQ 384 (696)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999886543
No 215
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.42 E-value=6.4e-07 Score=73.06 Aligned_cols=111 Identities=20% Similarity=0.067 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 024712 66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ 145 (263)
Q Consensus 66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 145 (263)
..-..+..++..++++.|+..+.++++++|+.+..+-..+..+...+++..|+.-+.++++.+|....+++..|...+..
T Consensus 6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred hhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhH
Confidence 34445666677777888888888888888877777777777777778888888888888888877777777777777888
Q ss_pred CChhHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 024712 146 GNFPTAIEWLNKYLETFMADHDAWRELAEIY 176 (263)
Q Consensus 146 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~ 176 (263)
+.+.+|...|+++....|+++.+...+-.|-
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHH
Confidence 8888888888888888888777766665554
No 216
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.40 E-value=0.00019 Score=57.64 Aligned_cols=174 Identities=14% Similarity=0.032 Sum_probs=124.4
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHH--HHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024712 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGI--LLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVA 140 (263)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~--~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 140 (263)
.+.+...-++..+-.|+++.|.+-|+.++. +|. ....-..|. .-.+.|..+.|..+-+++....|.-+.++...-.
T Consensus 119 epLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPE-tRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe 196 (531)
T COG3898 119 EPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPE-TRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLE 196 (531)
T ss_pred hHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChH-HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHH
Confidence 344555556677778999999999988875 332 112222232 3346799999999999999999998888888888
Q ss_pred HHHHcCChhHHHHHHHHHHHhc---CCCHH-----HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 024712 141 IAKAQGNFPTAIEWLNKYLETF---MADHD-----AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT 212 (263)
Q Consensus 141 ~~~~~g~~~~A~~~~~~~l~~~---p~~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 212 (263)
..+..|+++.|++..+...+.. ++-.+ .+...+... ..-+...|...-.++.++.|+....-..-+..++.
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~ 275 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL-LDADPASARDDALEANKLAPDLVPAAVVAARALFR 275 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHh
Confidence 8889999999999988765432 22211 111222222 23457788888888899999888888888889999
Q ss_pred cCCCCcHHHHHHHHHHhhccCCCcchhHHH
Q 024712 213 LGGVDNILLAKKYYASTIDLTGGKNTKALF 242 (263)
Q Consensus 213 ~g~~~~~~~A~~~~~~al~~~~~~~~~~~~ 242 (263)
.|+ ..++-..++.+.+..|.+++...|
T Consensus 276 d~~---~rKg~~ilE~aWK~ePHP~ia~lY 302 (531)
T COG3898 276 DGN---LRKGSKILETAWKAEPHPDIALLY 302 (531)
T ss_pred ccc---hhhhhhHHHHHHhcCCChHHHHHH
Confidence 998 888989999998888875544433
No 217
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.39 E-value=3.9e-07 Score=47.00 Aligned_cols=31 Identities=26% Similarity=0.442 Sum_probs=14.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcccHHHH
Q 024712 155 LNKYLETFMADHDAWRELAEIYVSLQMYKQA 185 (263)
Q Consensus 155 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A 185 (263)
|+++++++|+++.+|+.+|.+|...|++++|
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 3444444444444444444444444444444
No 218
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.38 E-value=7.5e-07 Score=72.70 Aligned_cols=112 Identities=16% Similarity=0.068 Sum_probs=103.5
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccH
Q 024712 103 LEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMY 182 (263)
Q Consensus 103 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 182 (263)
..+...+..+.|+.|+..|.++++++|+....+.+.+..+.+.+++..|+..+.++++.+|....+++..|......+++
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 45667778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 024712 183 KQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214 (263)
Q Consensus 183 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 214 (263)
.+|...|+....+.|+++.+...+..|-....
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs 120 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKIDECNKIVS 120 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999888887765433
No 219
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.35 E-value=2.4e-05 Score=68.41 Aligned_cols=123 Identities=13% Similarity=0.011 Sum_probs=101.4
Q ss_pred HHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHH
Q 024712 109 EAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC 188 (263)
Q Consensus 109 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 188 (263)
...+++.+|.....+.+...|+.+.+...-|.++.++|+.++|..+++..-...+++...+..+-.+|..+|++++|..+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 34589999999999999999999999999999999999999999888888778888888899999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 189 YEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 189 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
|++++..+|+ ......+=.+|.+.+. |.+=.+.--+..+..|.
T Consensus 100 Ye~~~~~~P~-eell~~lFmayvR~~~---yk~qQkaa~~LyK~~pk 142 (932)
T KOG2053|consen 100 YERANQKYPS-EELLYHLFMAYVREKS---YKKQQKAALQLYKNFPK 142 (932)
T ss_pred HHHHHhhCCc-HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhCCc
Confidence 9999999999 6666666667777666 54333333333334454
No 220
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.00017 Score=54.23 Aligned_cols=167 Identities=17% Similarity=0.200 Sum_probs=115.5
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-----CCCC
Q 024712 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES------KRVGRLEGILLEAKGLWAEAEKAYSSLLED-----NPLD 131 (263)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~ 131 (263)
....|+.-+..+...+++++|...+.++.+-+.++ +..+-..+........+.++..+++++... .|+.
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt 109 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT 109 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence 45678888888888899999999999998655433 234445566667778899999999999875 2443
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcccHHHHHHHHHHHHh----hC--CCC
Q 024712 132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELIL----SQ--PTV 199 (263)
Q Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~--p~~ 199 (263)
...-...+.-....-++++|+++|++++.....+ .+.+...+.++.....|.+|-..+.+-.. .. |+.
T Consensus 110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~ 189 (308)
T KOG1585|consen 110 AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQ 189 (308)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccH
Confidence 3333344444556778999999999988765443 34456678888888999988877776432 22 222
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712 200 PLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (263)
Q Consensus 200 ~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~ 232 (263)
...+...-.++....+ |..|...|+.+-++
T Consensus 190 ~k~~va~ilv~L~~~D---yv~aekc~r~~~qi 219 (308)
T KOG1585|consen 190 CKAYVAAILVYLYAHD---YVQAEKCYRDCSQI 219 (308)
T ss_pred HHHHHHHHHHHhhHHH---HHHHHHHhcchhcC
Confidence 2333444445555568 99999999887666
No 221
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=2.4e-05 Score=61.42 Aligned_cols=125 Identities=19% Similarity=0.061 Sum_probs=109.5
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh-cCCC---HHHHHHHHHHHHhc
Q 024712 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET-FMAD---HDAWRELAEIYVSL 179 (263)
Q Consensus 104 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~p~~---~~~~~~la~~~~~~ 179 (263)
.+.+....|++.+|...+++++...|.+.-++..--..++..|+.......+++.+.. +|+- ..+.-.++..+...
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence 4556677899999999999999999999999888889999999999999999999876 5554 34445677788899
Q ss_pred ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhc
Q 024712 180 QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID 231 (263)
Q Consensus 180 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~ 231 (263)
|-|++|.+...++++++|.+..+...++.++...|+ ++++.+++.+.-.
T Consensus 189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r---~Keg~eFM~~ted 237 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGR---HKEGKEFMYKTED 237 (491)
T ss_pred ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcch---hhhHHHHHHhccc
Confidence 999999999999999999999999999999999999 9999999887643
No 222
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.26 E-value=2.1e-06 Score=44.43 Aligned_cols=32 Identities=25% Similarity=0.455 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC
Q 024712 167 DAWRELAEIYVSLQMYKQAAFCYEELILSQPT 198 (263)
Q Consensus 167 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 198 (263)
.+|+.+|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555666666666666666666666666554
No 223
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.26 E-value=1.2e-06 Score=45.18 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=31.1
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHH
Q 024712 188 CYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAK 223 (263)
Q Consensus 188 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~ 223 (263)
+|+++++++|+++.++.++|.+|...|+ +++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~---~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGD---YEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcC---HHhhc
Confidence 4789999999999999999999999999 99886
No 224
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.25 E-value=3.4e-06 Score=43.55 Aligned_cols=32 Identities=28% Similarity=0.536 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC
Q 024712 167 DAWRELAEIYVSLQMYKQAAFCYEELILSQPT 198 (263)
Q Consensus 167 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 198 (263)
.+|+.+|.+++..|++++|+.+|++++.++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 34555666666666666666666666666554
No 225
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=2.2e-05 Score=58.95 Aligned_cols=102 Identities=17% Similarity=0.144 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--------CCCCH----------HHHHHHHHHHHHcCChhHHHHHHHHHH
Q 024712 98 KRVGRLEGILLEAKGLWAEAEKAYSSLLED--------NPLDP----------VLHKRRVAIAKAQGNFPTAIEWLNKYL 159 (263)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~~l 159 (263)
..++...|+-++..|+|.+|...|+.++.. .|..+ ..+.++++|+...|++-++++.....+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 345667788889999999999988888642 34432 244555666666666666666666666
Q ss_pred HhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC
Q 024712 160 ETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV 199 (263)
Q Consensus 160 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 199 (263)
..+|.+..+++..|.+....-+..+|...|.+++.++|.-
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 6666666666666666666556666666666666666544
No 226
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.24 E-value=3.4e-05 Score=65.41 Aligned_cols=119 Identities=18% Similarity=0.092 Sum_probs=97.3
Q ss_pred cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCChhHHH
Q 024712 77 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD----PVLHKRRVAIAKAQGNFPTAI 152 (263)
Q Consensus 77 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~ 152 (263)
..+.+.|.+++......+|+.+-..+..|.++...|+.++|++.+++++.....- ...+..++.++..+++|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 4567889999999999999999999999999999999999999999988533222 246788999999999999999
Q ss_pred HHHHHHHHhcCCCHH-HHHHHHHHHHhcccH-------HHHHHHHHHHHhh
Q 024712 153 EWLNKYLETFMADHD-AWRELAEIYVSLQMY-------KQAAFCYEELILS 195 (263)
Q Consensus 153 ~~~~~~l~~~p~~~~-~~~~la~~~~~~g~~-------~~A~~~~~~al~~ 195 (263)
.++.+..+.+.-+.. ..+..|.++...|+. ++|..++.++-..
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 999999986554433 345678888888988 8888888877544
No 227
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=2.4e-05 Score=58.69 Aligned_cols=100 Identities=9% Similarity=-0.015 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHh--------cCCCH----------HHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 024712 133 VLHKRRVAIAKAQGNFPTAIEWLNKYLET--------FMADH----------DAWRELAEIYVSLQMYKQAAFCYEELIL 194 (263)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~----------~~~~~la~~~~~~g~~~~A~~~~~~al~ 194 (263)
.++..-|+-++..|++.+|...|..++.. .|.++ ..+.+.+.|+...|+|-++++.....+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 46778899999999999999999988743 35543 3567889999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 195 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 195 ~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
.+|.+..+++..|.+....=+ ..+|...|.++++++|.
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn---~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWN---EAEAKADLQKVLELDPS 296 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcC---HHHHHHHHHHHHhcChh
Confidence 999999999999999999988 99999999999999996
No 228
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.21 E-value=0.00025 Score=60.31 Aligned_cols=153 Identities=18% Similarity=0.113 Sum_probs=115.1
Q ss_pred cCChHHHHHHHHHHHHhCC-CcHHHHHH-HHH----H-H--H--HcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 024712 77 CQCLDVAKDCIKVLQKQFP-ESKRVGRL-EGI----L-L--E--AKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ 145 (263)
Q Consensus 77 ~~~~~~A~~~~~~~~~~~p-~~~~~~~~-~a~----~-~--~--~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 145 (263)
.||-+.+++.+..+.+... ..+.+-.. ++. . + . .....+.|.+++.......|+..-.....|.++...
T Consensus 201 ~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~ 280 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLK 280 (468)
T ss_pred CCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 5899999999998877322 22222111 111 1 1 1 234678899999999999999998899999999999
Q ss_pred CChhHHHHHHHHHHHhcCC----CHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHhcCCCCcH-
Q 024712 146 GNFPTAIEWLNKYLETFMA----DHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL-YHLAYADVLYTLGGVDNI- 219 (263)
Q Consensus 146 g~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~~- 219 (263)
|+.++|+..+++++..... ..-.++.+|.++..+++|++|..++.+..+.+.-... ..+..|-|+...|+ .
T Consensus 281 g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~---~~ 357 (468)
T PF10300_consen 281 GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGR---EE 357 (468)
T ss_pred cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcc---ch
Confidence 9999999999998843222 1345778999999999999999999999987766543 45667889999998 6
Q ss_pred ------HHHHHHHHHhhcc
Q 024712 220 ------LLAKKYYASTIDL 232 (263)
Q Consensus 220 ------~~A~~~~~~al~~ 232 (263)
++|...|.++-.+
T Consensus 358 ~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 358 EAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred hhhhhHHHHHHHHHHHHHH
Confidence 8888888887554
No 229
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.20 E-value=0.00014 Score=51.66 Aligned_cols=110 Identities=17% Similarity=0.026 Sum_probs=65.7
Q ss_pred HHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHH-HHHHHHHHHhcCCCHHHHHHHHHHHHhcccHH
Q 024712 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTA-IEWLNKYLETFMADHDAWRELAEIYVSLQMYK 183 (263)
Q Consensus 105 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 183 (263)
|......++.+.++..+++++.+-..+.-.-.. ...|-.. ...++.. ...+...++..+...|+++
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~-------~~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~~~~~ 79 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLD-------DEEWVEPERERLREL------YLDALERLAEALLEAGDYE 79 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGT-------TSTTHHHHHHHHHHH------HHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCC-------ccHHHHHHHHHHHHH------HHHHHHHHHHHHHhccCHH
Confidence 444556677788888888888764322110000 0111111 1111111 1245566777778888888
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 024712 184 QAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI 230 (263)
Q Consensus 184 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al 230 (263)
+|+..+++++..+|.+-.++..+..++...|+ ..+|+..|.++.
T Consensus 80 ~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~---~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 80 EALRLLQRALALDPYDEEAYRLLMRALAAQGR---RAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcC---HHHHHHHHHHHH
Confidence 88888888888888888888888888888888 888888777764
No 230
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.17 E-value=1.7e-05 Score=65.05 Aligned_cols=146 Identities=13% Similarity=0.101 Sum_probs=117.5
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH-HHhcCC--------CHHHHHHHH
Q 024712 103 LEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKY-LETFMA--------DHDAWRELA 173 (263)
Q Consensus 103 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-l~~~p~--------~~~~~~~la 173 (263)
.....+.++.+...+..-.+.++....+.+.+....+..++..|++.+|.+.+... +...|. .-.+|.++|
T Consensus 211 ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlG 290 (696)
T KOG2471|consen 211 YKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLG 290 (696)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcc
Confidence 34455677777777887778888887888888899999999999999999887653 233333 234578999
Q ss_pred HHHHhcccHHHHHHHHHHHHh-h--------CC---------CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 174 EIYVSLQMYKQAAFCYEELIL-S--------QP---------TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~al~-~--------~p---------~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
-+++..|.|.-++.+|.+++. . .| ....+.++.|..|...|+ +-.|.+.|.++++....
T Consensus 291 cIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~gr---Pl~AfqCf~~av~vfh~ 367 (696)
T KOG2471|consen 291 CIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGR---PLLAFQCFQKAVHVFHR 367 (696)
T ss_pred eEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCC---cHHHHHHHHHHHHHHhc
Confidence 999999999999999999995 1 11 234688999999999999 99999999999998774
Q ss_pred cchhHHHhHHHHHhhch
Q 024712 236 KNTKALFGICLVMFVCH 252 (263)
Q Consensus 236 ~~~~~~~~l~~~~~~~~ 252 (263)
+++.|..++.||.-.+
T Consensus 368 -nPrlWLRlAEcCima~ 383 (696)
T KOG2471|consen 368 -NPRLWLRLAECCIMAL 383 (696)
T ss_pred -CcHHHHHHHHHHHHHh
Confidence 8999999999976633
No 231
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.13 E-value=0.00026 Score=58.64 Aligned_cols=165 Identities=15% Similarity=0.132 Sum_probs=116.8
Q ss_pred HHHHHHhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------------
Q 024712 28 LCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP------------ 95 (263)
Q Consensus 28 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------------ 95 (263)
...||++ ++..-++.+...+.. +|+..++|.-++.- ......+|.++++++++...
T Consensus 176 q~AWRER---np~aRIkaA~eALei-------~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~ 243 (539)
T PF04184_consen 176 QKAWRER---NPQARIKAAKEALEI-------NPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHH 243 (539)
T ss_pred HHHHhcC---CHHHHHHHHHHHHHh-------hhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcc
Confidence 3445554 466777777777766 77888877766642 12345667777777666211
Q ss_pred ---------Cc----HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 024712 96 ---------ES----KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL--DPVLHKRRVAIAKAQGNFPTAIEWLNKYLE 160 (263)
Q Consensus 96 ---------~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 160 (263)
.+ ..+...+|.+..+.|+.++|++.++.+++..|. +..++.++..++...+.+.++...+.+.=+
T Consensus 244 g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 244 GHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred cchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 01 234567899999999999999999999988775 456899999999999999999999988643
Q ss_pred h-cCCCHHHHHHHHHHHHh-ccc---------------HHHHHHHHHHHHhhCCCCHHHHH
Q 024712 161 T-FMADHDAWRELAEIYVS-LQM---------------YKQAAFCYEELILSQPTVPLYHL 204 (263)
Q Consensus 161 ~-~p~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~~~~ 204 (263)
+ -|+++...+.-|.+..+ .++ -..|.+.+.+|++.+|..+..+.
T Consensus 324 i~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 324 ISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred ccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 3 36666666665554433 111 23477889999999998876544
No 232
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=0.0005 Score=52.33 Aligned_cols=170 Identities=15% Similarity=0.094 Sum_probs=129.9
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh-HH
Q 024712 74 AMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKG-LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP-TA 151 (263)
Q Consensus 74 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~-~A 151 (263)
..+...-+.|+.+...++..+|.+-.+|...-.++..++ +..+-++++.++++.+|.+..+|...-.+....|++. .-
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence 345567788999999999999988888877777766654 6777889999999999999999988888888888887 77
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-cCCC--CcHHHHHHHHHH
Q 024712 152 IEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT-LGGV--DNILLAKKYYAS 228 (263)
Q Consensus 152 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~--~~~~~A~~~~~~ 228 (263)
++..+.++..+..+-.+|...-.+...-+.++.-+.+..+.++.+-.+-.+|...-.+... .|-. ...+.-+.+..+
T Consensus 133 Lef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~ 212 (318)
T KOG0530|consen 133 LEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKD 212 (318)
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHH
Confidence 8888999999988888998888888888889999999999998887766666553222222 2221 124555677777
Q ss_pred hhccCCCcchhHHHhH
Q 024712 229 TIDLTGGKNTKALFGI 244 (263)
Q Consensus 229 al~~~~~~~~~~~~~l 244 (263)
.+.+.|+ +..+|..|
T Consensus 213 ~I~~vP~-NeSaWnYL 227 (318)
T KOG0530|consen 213 KILLVPN-NESAWNYL 227 (318)
T ss_pred HHHhCCC-CccHHHHH
Confidence 7888886 55555433
No 233
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.11 E-value=0.00062 Score=55.02 Aligned_cols=146 Identities=11% Similarity=0.003 Sum_probs=108.1
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCc------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHH
Q 024712 85 DCIKVLQKQFPESKRVGRLEGILLEAKGL------------WAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAI 152 (263)
Q Consensus 85 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~------------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 152 (263)
.-+++.+..+|.+...|..+.......-. .+.-+.+|++|++.+|++...+..+.....+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45677788888888888777665443321 456778899999999999888888888888888888888
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHh---cccHHHHHHHHHHHHhhCC----C--------------CHHHHHHHHHHHH
Q 024712 153 EWLNKYLETFMADHDAWRELAEIYVS---LQMYKQAAFCYEELILSQP----T--------------VPLYHLAYADVLY 211 (263)
Q Consensus 153 ~~~~~~l~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p----~--------------~~~~~~~la~~~~ 211 (263)
..+++++..+|++...|...-..... .-.+......|.+++..-. . -..++.+++....
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~ 165 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR 165 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999888765544433 2346677777777764311 0 0125667777788
Q ss_pred hcCCCCcHHHHHHHHHHhhccC
Q 024712 212 TLGGVDNILLAKKYYASTIDLT 233 (263)
Q Consensus 212 ~~g~~~~~~~A~~~~~~al~~~ 233 (263)
..|- .+.|+..++-.+++|
T Consensus 166 ~aG~---~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 166 QAGY---TERAVALWQALLEFN 184 (321)
T ss_pred HCCc---hHHHHHHHHHHHHHH
Confidence 8899 999999999988874
No 234
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.06 E-value=0.00036 Score=49.50 Aligned_cols=113 Identities=15% Similarity=0.099 Sum_probs=76.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 024712 69 QVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLW-AEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN 147 (263)
Q Consensus 69 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~-~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 147 (263)
..+......++...++..+.+++.......-.-... ..| ......++... ..+...++..+...|+
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-------~~W~~~~r~~l~~~~------~~~~~~l~~~~~~~~~ 77 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALYRGDFLPDLDD-------EEWVEPERERLRELY------LDALERLAEALLEAGD 77 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-------STTHHHHHHHHHHHH------HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-------cHHHHHHHHHHHHHH------HHHHHHHHHHHHhccC
Confidence 345556678899999999999998764322100000 122 12222222222 3566778888889999
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Q 024712 148 FPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL 194 (263)
Q Consensus 148 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 194 (263)
+++|+..+++++..+|.+..++..+..++...|+...|+..|+++..
T Consensus 78 ~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 78 YEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999887753
No 235
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=5.3e-05 Score=59.32 Aligned_cols=101 Identities=21% Similarity=0.178 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHH
Q 024712 98 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP----VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELA 173 (263)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la 173 (263)
+..+..-|+-|+...+|..|+..|.+.+...-.++ ..|.+.+.+....|+|..|+....+++..+|.+..+++.=|
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 34555678889999999999999999998764443 46788888999999999999999999999999999999999
Q ss_pred HHHHhcccHHHHHHHHHHHHhhCCC
Q 024712 174 EIYVSLQMYKQAAFCYEELILSQPT 198 (263)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~ 198 (263)
.|++.+.++..|..+++..+.++..
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 9999999988888888887766543
No 236
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.04 E-value=0.00044 Score=60.66 Aligned_cols=151 Identities=15% Similarity=0.144 Sum_probs=110.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 024712 69 QVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNF 148 (263)
Q Consensus 69 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 148 (263)
..+......|.+++|..+|.+.-. +-.+-..|...|.|++|.++.+.--.++ -...+++.+..+...++.
T Consensus 805 kvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di 874 (1416)
T KOG3617|consen 805 KVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDI 874 (1416)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccH
Confidence 356666777888888888876543 2356677888888888887655422222 235678888888889999
Q ss_pred hHHHHHHHHH----------HHhcC----------CCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh-------------
Q 024712 149 PTAIEWLNKY----------LETFM----------ADHDAWRELAEIYVSLQMYKQAAFCYEELILS------------- 195 (263)
Q Consensus 149 ~~A~~~~~~~----------l~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------- 195 (263)
+.|+++|+++ +..+| .++..|.-.|......|+.+.|+.+|..+-..
T Consensus 875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~ 954 (1416)
T KOG3617|consen 875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKT 954 (1416)
T ss_pred HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCc
Confidence 9999999873 22233 34566777898899999999999999877432
Q ss_pred --------CCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712 196 --------QPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (263)
Q Consensus 196 --------~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~ 232 (263)
...+-.+.+.+|+.|...|+ ..+|+.+|.++-..
T Consensus 955 ~kAa~iA~esgd~AAcYhlaR~YEn~g~---v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 955 DKAARIAEESGDKAACYHLARMYENDGD---VVKAVKFFTRAQAF 996 (1416)
T ss_pred hHHHHHHHhcccHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHH
Confidence 23455688999999999999 99999999887543
No 237
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=0.0035 Score=47.91 Aligned_cols=184 Identities=12% Similarity=0.158 Sum_probs=142.3
Q ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHc-CChHHHHHHHHHHHHhCCCcHHHH
Q 024712 23 GAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDC-QCLDVAKDCIKVLQKQFPESKRVG 101 (263)
Q Consensus 23 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~ 101 (263)
++..|+|.+...+.+.+ .++++-..++.- +|.+.++|...-.++-.. .+..+-++.+..+++.+|.+-.+|
T Consensus 44 ~~m~YfRAI~~~~E~S~-RAl~LT~d~i~l-------NpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvW 115 (318)
T KOG0530|consen 44 DVMDYFRAIIAKNEKSP-RALQLTEDAIRL-------NPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVW 115 (318)
T ss_pred HHHHHHHHHHhccccCH-HHHHHHHHHHHh-------CcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHH
Confidence 56778887777765544 445554444433 777777777655554443 567888999999999999999999
Q ss_pred HHHHHHHHHcCcHH-HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--
Q 024712 102 RLEGILLEAKGLWA-EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS-- 178 (263)
Q Consensus 102 ~~~a~~~~~~~~~~-~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-- 178 (263)
...-.+....|+.. .-+++.+.++..+..+..+|...-.+...-+.++.-+.+....++.+-.+-.+|...-.+...
T Consensus 116 HHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~ 195 (318)
T KOG0530|consen 116 HHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTK 195 (318)
T ss_pred HHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEecc
Confidence 99999999999887 788999999999999999999999999999999999999999999887777777542211111
Q ss_pred ----cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh-cC
Q 024712 179 ----LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT-LG 214 (263)
Q Consensus 179 ----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g 214 (263)
.-..+.-+.+..+.+...|++..+|..|.-++.. .|
T Consensus 196 ~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~g 236 (318)
T KOG0530|consen 196 GVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSG 236 (318)
T ss_pred CCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccC
Confidence 1234455677888899999999999999888875 55
No 238
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.00 E-value=2e-05 Score=40.52 Aligned_cols=30 Identities=27% Similarity=0.165 Sum_probs=13.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCC
Q 024712 135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164 (263)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 164 (263)
+..+|.+++..|++++|+..++++++++|+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 344444444444444444444444444443
No 239
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.99 E-value=1.6e-05 Score=40.94 Aligned_cols=31 Identities=16% Similarity=0.082 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCC
Q 024712 134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164 (263)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 164 (263)
+|..+|.++..+|++++|+..|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555554
No 240
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.97 E-value=0.0011 Score=48.38 Aligned_cols=115 Identities=11% Similarity=-0.008 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHhCCCcHH---HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHH
Q 024712 82 VAKDCIKVLQKQFPESKR---VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWL 155 (263)
Q Consensus 82 ~A~~~~~~~~~~~p~~~~---~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~ 155 (263)
+.....++....+|.+.. +...++..+...+++++|+..++.++....+. .-+-.+++.+...+|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 344444444444443322 22344555555666666666666555432211 123445556666666666665555
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC
Q 024712 156 NKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 197 (263)
Q Consensus 156 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 197 (263)
.......- .+......|.++...|+-++|+..|++++...+
T Consensus 150 ~t~~~~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 150 DTIKEESW-AAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred hccccccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 43322110 011223345566666666666666666655543
No 241
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.95 E-value=0.0023 Score=46.64 Aligned_cols=116 Identities=13% Similarity=0.053 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhcCCCCHH---HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcccHHHHHHHH
Q 024712 116 EAEKAYSSLLEDNPLDPV---LHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCY 189 (263)
Q Consensus 116 ~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~ 189 (263)
+......+....+|.+.. +...++..+...|++++|+..++.++....+. .-+-..||.+...+|.+++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 445555666666655543 44567888999999999999999998643332 234578999999999999999987
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 190 EELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 190 ~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
...-.. .-.+......|+++...|+ .++|+..|+++++..++
T Consensus 150 ~t~~~~-~w~~~~~elrGDill~kg~---k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 150 DTIKEE-SWAAIVAELRGDILLAKGD---KQEARAAYEKALESDAS 191 (207)
T ss_pred hccccc-cHHHHHHHHhhhHHHHcCc---hHHHHHHHHHHHHccCC
Confidence 654321 1123346678999999999 99999999999998754
No 242
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=0.00012 Score=57.35 Aligned_cols=100 Identities=16% Similarity=0.062 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024712 133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD----HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYAD 208 (263)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 208 (263)
.-+..-|+-|++..+|..|+..|.+.|...-.+ ...|.+.|.+.+..|+|..|+.-+.+++.++|.+..++++=|.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 345667899999999999999999999875555 4467889999999999999999999999999999999999999
Q ss_pred HHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 209 VLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 209 ~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
|++.+.. +..|..+.+..++++..
T Consensus 162 c~~eLe~---~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 162 CLLELER---FAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHH---HHHHHHHHhhhhhhhHH
Confidence 9999999 99999999999888653
No 243
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.85 E-value=0.0029 Score=47.85 Aligned_cols=162 Identities=16% Similarity=0.089 Sum_probs=115.8
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC-----
Q 024712 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF-----PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD----- 131 (263)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~----- 131 (263)
.-...+++.+...-....+.++..+++++...+ |+.+..-...+--.....+.++|+++|++++..-..+
T Consensus 69 hAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~m 148 (308)
T KOG1585|consen 69 HAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQM 148 (308)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHH
Confidence 345678888999989999999999999999865 4444444555556667789999999999998753322
Q ss_pred -HHHHHHHHHHHHHcCChhHHHHHHHHHHHh------cCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC----CCCH
Q 024712 132 -PVLHKRRVAIAKAQGNFPTAIEWLNKYLET------FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ----PTVP 200 (263)
Q Consensus 132 -~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~ 200 (263)
.+.+...+.++.+..++.+|-..+.+-... .|+....+.....++...++|..|..+++..-++. |.+.
T Consensus 149 a~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~ 228 (308)
T KOG1585|consen 149 AFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDS 228 (308)
T ss_pred HHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHH
Confidence 245566788888999999988877764332 34444556666677777889999999999987654 4445
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 024712 201 LYHLAYADVLYTLGGVDNILLAKKYYA 227 (263)
Q Consensus 201 ~~~~~la~~~~~~g~~~~~~~A~~~~~ 227 (263)
.+..+|-..| ..|+ .++..+.+.
T Consensus 229 r~lenLL~ay-d~gD---~E~~~kvl~ 251 (308)
T KOG1585|consen 229 RSLENLLTAY-DEGD---IEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHh-ccCC---HHHHHHHHc
Confidence 5666665444 5677 666555443
No 244
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.83 E-value=0.0035 Score=51.34 Aligned_cols=170 Identities=16% Similarity=0.036 Sum_probs=104.5
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH---H
Q 024712 61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP----ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---V 133 (263)
Q Consensus 61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~ 133 (263)
.+....+...+..+...|.++.|...+.++...++ ..+.+.+..+.++...|+..+|+..++..+....... .
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 35566777788888888888888888888777552 2466777778888888888888888877776211111 0
Q ss_pred HHHHHHHHHHH--cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc------ccHHHHHHHHHHHHhhCCCCHHHHHH
Q 024712 134 LHKRRVAIAKA--QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL------QMYKQAAFCYEELILSQPTVPLYHLA 205 (263)
Q Consensus 134 ~~~~l~~~~~~--~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~p~~~~~~~~ 205 (263)
....+...... ............. .....++..+|...... +..++++..|.++++.+|....++..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~ 297 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESK-----ELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHS 297 (352)
T ss_pred cHHHHhhccccccccccccchhhhhH-----HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHH
Confidence 00001000000 0000000000000 01134566677777666 78888888888888888888888888
Q ss_pred HHHHHHhcCCC--------------CcHHHHHHHHHHhhccCCC
Q 024712 206 YADVLYTLGGV--------------DNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 206 la~~~~~~g~~--------------~~~~~A~~~~~~al~~~~~ 235 (263)
+|..+...-.. +-...|+..|-+++...+.
T Consensus 298 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 298 WALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 88777654220 0135689999999998875
No 245
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.81 E-value=1.1e-05 Score=63.22 Aligned_cols=124 Identities=15% Similarity=0.056 Sum_probs=94.3
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccH
Q 024712 103 LEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMY 182 (263)
Q Consensus 103 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 182 (263)
..+.-.+..|.+++|++.+..++.++|.....+...+.++..++++..|+.-+..+++++|+...-+-..|.....+|++
T Consensus 119 ~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 119 VQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNW 198 (377)
T ss_pred HHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhch
Confidence 34555667788999999999999999998888889999999999999999999999999999888888888888889999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 024712 183 KQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI 230 (263)
Q Consensus 183 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al 230 (263)
.+|...+..+.+++-+. .+-..+-.+.-..+. .++-...+++..
T Consensus 199 e~aa~dl~~a~kld~dE-~~~a~lKeV~p~a~k---i~e~~~k~er~~ 242 (377)
T KOG1308|consen 199 EEAAHDLALACKLDYDE-ANSATLKEVFPNAGK---IEEHRRKYERAR 242 (377)
T ss_pred HHHHHHHHHHHhccccH-HHHHHHHHhccchhh---hhhchhHHHHHH
Confidence 99999999888876432 222333344444444 444444444443
No 246
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.79 E-value=4.9e-05 Score=39.07 Aligned_cols=30 Identities=30% Similarity=0.487 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhhCC
Q 024712 168 AWRELAEIYVSLQMYKQAAFCYEELILSQP 197 (263)
Q Consensus 168 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 197 (263)
+|+.+|.++...|++++|+.+|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 445555555555555555555555555554
No 247
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.0033 Score=48.95 Aligned_cols=132 Identities=17% Similarity=0.042 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHH-HH--H
Q 024712 98 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRE-LA--E 174 (263)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~-la--~ 174 (263)
.......+.-....|++.+|...+..++...|.+..+...++.++...|+.+.|...+...=.....+ .+.. .+ .
T Consensus 134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~--~~~~l~a~i~ 211 (304)
T COG3118 134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK--AAHGLQAQIE 211 (304)
T ss_pred HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh--HHHHHHHHHH
Confidence 34455667778888999999999999999999999999999999999999998887776532222111 1111 11 2
Q ss_pred HHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 175 IYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
++.......+ +..+++.+..+|++..+.+.+|..+...|+ .+.|.+.+-..+..+-+
T Consensus 212 ll~qaa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~---~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 212 LLEQAAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGR---NEAALEHLLALLRRDRG 268 (304)
T ss_pred HHHHHhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhccc
Confidence 2222222222 234566678899999999999999999999 99999999988887654
No 248
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.79 E-value=0.0082 Score=45.17 Aligned_cols=140 Identities=12% Similarity=0.047 Sum_probs=106.1
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHHc-CcHHHHHHHHHHHHhcCCCC---
Q 024712 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKR------VGRLEGILLEAK-GLWAEAEKAYSSLLEDNPLD--- 131 (263)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~------~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~p~~--- 131 (263)
+....|...+.+| +.++..+|..+++++++++.+-.+ .+..+|.+|... .++++|+..|+.+-+.....
T Consensus 72 Daat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ 150 (288)
T KOG1586|consen 72 DAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV 150 (288)
T ss_pred hHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh
Confidence 4566666666554 667999999999999998864333 344788888876 89999999999987743222
Q ss_pred ---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH
Q 024712 132 ---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH-------DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL 201 (263)
Q Consensus 132 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 201 (263)
-.++...+..-...++|.+|+..|+++....-++. +.++.-|.|++...+.-.+...+++..+++|.+..
T Consensus 151 ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 151 SSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 13566667777788999999999999987665553 33456678888888888899999999999998755
Q ss_pred H
Q 024712 202 Y 202 (263)
Q Consensus 202 ~ 202 (263)
.
T Consensus 231 s 231 (288)
T KOG1586|consen 231 S 231 (288)
T ss_pred c
Confidence 3
No 249
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.78 E-value=0.001 Score=47.17 Aligned_cols=86 Identities=21% Similarity=0.160 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024712 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA 142 (263)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 142 (263)
....+..+....+..++.+.+..++..+....|..+.+...-|.++...|+|.+|+.+++.+....|..+.+--.++.|+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 44555566667777888888888888888888888888888888888888888888888888888888887777788888
Q ss_pred HHcCCh
Q 024712 143 KAQGNF 148 (263)
Q Consensus 143 ~~~g~~ 148 (263)
+..|+.
T Consensus 89 ~~~~D~ 94 (160)
T PF09613_consen 89 YALGDP 94 (160)
T ss_pred HHcCCh
Confidence 877764
No 250
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.76 E-value=3.2e-05 Score=60.75 Aligned_cols=93 Identities=15% Similarity=-0.039 Sum_probs=67.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh
Q 024712 70 VSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP 149 (263)
Q Consensus 70 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 149 (263)
.+.-++..|.+++|+..+..++.++|....++...+.++...++...|+.-+..+++++|+....+...+.....+|+++
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWE 199 (377)
T ss_pred HHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchH
Confidence 34455666777777777777777777777777777777777777777777777777777777766666677777777777
Q ss_pred HHHHHHHHHHHhc
Q 024712 150 TAIEWLNKYLETF 162 (263)
Q Consensus 150 ~A~~~~~~~l~~~ 162 (263)
+|...+..+++++
T Consensus 200 ~aa~dl~~a~kld 212 (377)
T KOG1308|consen 200 EAAHDLALACKLD 212 (377)
T ss_pred HHHHHHHHHHhcc
Confidence 7777777777654
No 251
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.74 E-value=0.00016 Score=60.87 Aligned_cols=99 Identities=15% Similarity=0.073 Sum_probs=66.8
Q ss_pred HHHcCcHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHH
Q 024712 108 LEAKGLWAEAEKAYSSLLEDNPLDPV-LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAA 186 (263)
Q Consensus 108 ~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 186 (263)
....|+...|+.++..++...|.... ...+++.++.+.|..-.|-..+.+++.+....+-..+.+|..+..+.+.+.|+
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 34456777777777777776665442 45567777777776667777777777777666666677777777777777777
Q ss_pred HHHHHHHhhCCCCHHHHHHH
Q 024712 187 FCYEELILSQPTVPLYHLAY 206 (263)
Q Consensus 187 ~~~~~al~~~p~~~~~~~~l 206 (263)
+.++++++.+|+++.+...|
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l 716 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSL 716 (886)
T ss_pred HHHHHHHhcCCCChhhHHHH
Confidence 77777777777776654443
No 252
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.70 E-value=0.0053 Score=43.58 Aligned_cols=80 Identities=19% Similarity=-0.024 Sum_probs=43.8
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHH
Q 024712 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYK 183 (263)
Q Consensus 104 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 183 (263)
...+-...++.+++..++..+--+.|..+..-..-|.++...|++.+|+..++.+....|..+.+--.++.|++.+|+.+
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 33344444555555555555555555555555555555555555555555555555555555555555555555555443
No 253
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.69 E-value=0.00098 Score=42.83 Aligned_cols=75 Identities=21% Similarity=0.096 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 024712 151 AIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV--PLYHLAYADVLYTLGGVDNILLAKKYYAS 228 (263)
Q Consensus 151 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~~~~A~~~~~~ 228 (263)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.++..+++. ..+...+-.++-.+|. -+.....|++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~---~~plv~~~RR 83 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP---GDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T---T-HHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC---CChHHHHHHH
Confidence 3567788888899999999999999999999999999988888887755 5566666677777776 4444444444
No 254
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.68 E-value=0.0011 Score=54.91 Aligned_cols=94 Identities=13% Similarity=0.101 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-hhHHHHHHHHHH
Q 024712 81 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGN-FPTAIEWLNKYL 159 (263)
Q Consensus 81 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~l 159 (263)
..-..+|+.++..++.++..|..........+.+.+-...|.+++..+|++++.|..-+.-.+..+. .+.|...+.+++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 3456778888999998898888888888887878888899999999999999999888887777765 888899999999
Q ss_pred HhcCCCHHHHHHHHH
Q 024712 160 ETFMADHDAWRELAE 174 (263)
Q Consensus 160 ~~~p~~~~~~~~la~ 174 (263)
+.+|+++..|...-.
T Consensus 168 R~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYFR 182 (568)
T ss_pred hcCCCChHHHHHHHH
Confidence 999999988865443
No 255
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=97.68 E-value=0.0046 Score=50.74 Aligned_cols=157 Identities=15% Similarity=0.051 Sum_probs=113.0
Q ss_pred HHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--------------C------------
Q 024712 75 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED--------------N------------ 128 (263)
Q Consensus 75 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------------~------------ 128 (263)
...+|.+.-+ ..+..+|-+...+..++.++..+|+.+.|.+++++++-. +
T Consensus 21 v~~~Dp~~l~----~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~ 96 (360)
T PF04910_consen 21 VQSHDPNALI----NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRR 96 (360)
T ss_pred HHccCHHHHH----HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCcc
Confidence 3445554333 345778999999999999999999999988888888531 1
Q ss_pred CCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC-CHHHHHH-HHHHHHhcccHHHHHHHHHHHHhhCC-----C
Q 024712 129 PLDP---VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA-DHDAWRE-LAEIYVSLQMYKQAAFCYEELILSQP-----T 198 (263)
Q Consensus 129 p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~p-----~ 198 (263)
+.|. .+.......+.+.|-+..|.++.+-.+.++|. |+-.... +=....+.++|+--+..++....... .
T Consensus 97 ~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~ 176 (360)
T PF04910_consen 97 PENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSL 176 (360)
T ss_pred ccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhh
Confidence 1122 25566778888999999999999999999999 7654444 44444567888888888877655211 1
Q ss_pred CHHHHHHHHHHHHhcCCC------------CcHHHHHHHHHHhhccCCC
Q 024712 199 VPLYHLAYADVLYTLGGV------------DNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 199 ~~~~~~~la~~~~~~g~~------------~~~~~A~~~~~~al~~~~~ 235 (263)
-|...+..+-+++..++. .+.+.|...+.+|+...|.
T Consensus 177 lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 177 LPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred CccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 245677788888888881 0128999999999998774
No 256
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.66 E-value=0.024 Score=46.93 Aligned_cols=73 Identities=16% Similarity=0.038 Sum_probs=60.0
Q ss_pred HHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC-cchhHHHhHHHHHhh
Q 024712 173 AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG-KNTKALFGICLVMFV 250 (263)
Q Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~-~~~~~~~~l~~~~~~ 250 (263)
|..++.+|+|.++.-+-.-..++.| .+.++..+|.|++...+ |++|-.++...-. +.+ .+.....++++|.+.
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~---Y~eA~~~l~~LP~-n~~~~dskvqKAl~lCqKh 542 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKR---YQEAWEYLQKLPP-NERMRDSKVQKALALCQKH 542 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhh---HHHHHHHHHhCCC-chhhHHHHHHHHHHHHHHh
Confidence 4556889999999999999999999 89999999999999999 9999999876432 333 456666788888654
No 257
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.63 E-value=0.0098 Score=52.68 Aligned_cols=161 Identities=15% Similarity=0.126 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHH----------HHhCC----------CcHHHHHHHHHHHHHcCcHHHHHHHHHH
Q 024712 64 WTLYEQVSIAAMDCQCLDVAKDCIKVL----------QKQFP----------ESKRVGRLEGILLEAKGLWAEAEKAYSS 123 (263)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~----------~~~~p----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 123 (263)
-..|++.+..+-..+|.+.|+++|++. +..+| .++..|...|..+...|+.+.|+.+|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 456777788777888999999888753 33444 3566777889999999999999999998
Q ss_pred HHh---------------------cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH------hcCCC-----------
Q 024712 124 LLE---------------------DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLE------TFMAD----------- 165 (263)
Q Consensus 124 ~~~---------------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~------~~p~~----------- 165 (263)
+-. ....+..+.+.+|..|...|++.+|+..|-++-. +...+
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal 1017 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLAL 1017 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 844 1344556778899999999999999998877543 22111
Q ss_pred ---HHHHHHHHHHHHhcc-cHHHHHHHHHHH------H-----------------hhCC-CCHHHHHHHHHHHHhcCCCC
Q 024712 166 ---HDAWRELAEIYVSLQ-MYKQAAFCYEEL------I-----------------LSQP-TVPLYHLAYADVLYTLGGVD 217 (263)
Q Consensus 166 ---~~~~~~la~~~~~~g-~~~~A~~~~~~a------l-----------------~~~p-~~~~~~~~la~~~~~~g~~~ 217 (263)
+.-....|..|...| .++.|..+|.++ + .++| .+|.....-++.+....+
T Consensus 1018 ~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~q-- 1095 (1416)
T KOG3617|consen 1018 MSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQ-- 1095 (1416)
T ss_pred hcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHH--
Confidence 011122233344443 455555544432 1 2244 457777888888888888
Q ss_pred cHHHHHHHHH
Q 024712 218 NILLAKKYYA 227 (263)
Q Consensus 218 ~~~~A~~~~~ 227 (263)
|++|...+-
T Consensus 1096 -yekAV~lL~ 1104 (1416)
T KOG3617|consen 1096 -YEKAVNLLC 1104 (1416)
T ss_pred -HHHHHHHHH
Confidence 998886543
No 258
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.62 E-value=0.014 Score=47.28 Aligned_cols=118 Identities=14% Similarity=0.053 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---cCChhHHHHHHH
Q 024712 80 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA---QGNFPTAIEWLN 156 (263)
Q Consensus 80 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~ 156 (263)
.+.-+.+|+++++.+|++..++..+-.......+.++...-+++++..+|+++..|..+...... .-.++.....|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 45667899999999999999998888888888899999999999999999999988776665544 235778888888
Q ss_pred HHHHhcCCC------------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC
Q 024712 157 KYLETFMAD------------------HDAWRELAEIYVSLQMYKQAAFCYEELILSQP 197 (263)
Q Consensus 157 ~~l~~~p~~------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 197 (263)
+++..-... ..++..+.......|..+.|+..++-.++.+=
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 877642110 23445667777889999999999999998864
No 259
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.0021 Score=53.35 Aligned_cols=79 Identities=14% Similarity=0.051 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCc-HHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 024712 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGL-WAEAEKAYSSLLEDNPLDPVLHKRRVAI 141 (263)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 141 (263)
+...|........+.+.+.+--.+|.+++..+|+++.+|..-|.-.+..+. .+.|...+.+++..+|+++..|...-.+
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRM 183 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHH
Confidence 334444444444455557778888888888888888888877777666665 7778888888888888888776654443
No 260
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.61 E-value=0.017 Score=48.74 Aligned_cols=150 Identities=17% Similarity=0.101 Sum_probs=106.1
Q ss_pred hHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCc---HHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCChhHHHHH
Q 024712 80 LDVAKDCIKVLQKQFP-ESKRVGRLEGILLEAKGL---WAEAEKAYSSLLEDNPLDP-VLHKRRVAIAKAQGNFPTAIEW 154 (263)
Q Consensus 80 ~~~A~~~~~~~~~~~p-~~~~~~~~~a~~~~~~~~---~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~ 154 (263)
-+++..++++++..-. .+...++.++..-...-+ ++...+.+++++.....++ -++..+...-.+..-...|...
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 5667777777776433 344445555554443333 7777888888887644443 3555666666666667788888
Q ss_pred HHHHHHhcCCCHHHHHHHHHH-HHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712 155 LNKYLETFMADHDAWRELAEI-YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (263)
Q Consensus 155 ~~~~l~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~ 232 (263)
|.++-+..-....++..-|.+ |...++..-|...|+-.++..++.+.........+...|+ -..|...|++++..
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNd---d~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLND---DNNARALFERVLTS 464 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCc---chhHHHHHHHHHhc
Confidence 888876544433455444433 4557899999999999999999999988888888889998 88899999999876
No 261
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.60 E-value=0.0015 Score=43.11 Aligned_cols=103 Identities=17% Similarity=0.092 Sum_probs=58.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 024712 70 VSIAAMDCQCLDVAKDCIKVLQKQFPESKR---VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG 146 (263)
Q Consensus 70 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 146 (263)
++..++..|++-+|+++++..+..++++.. +....|.++.....- ..+|+ ....+.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~-----------ten~d-~k~~yL--------- 60 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKK-----------TENPD-VKFRYL--------- 60 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHh-----------ccCch-HHHHHH---------
Confidence 345566677777777777777776665442 333334443322110 11222 111111
Q ss_pred ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 024712 147 NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS 195 (263)
Q Consensus 147 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 195 (263)
-.+++++.++..+.|..+..++.+|.-+.....|+++..-.++++..
T Consensus 61 --l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 61 --LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred --HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 12566777777777777777777777766667777777777777654
No 262
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.59 E-value=0.028 Score=45.71 Aligned_cols=132 Identities=11% Similarity=-0.001 Sum_probs=92.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHH-HHHHHHHHH---
Q 024712 67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV-LHKRRVAIA--- 142 (263)
Q Consensus 67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~--- 142 (263)
+..+....-..|+.+.|+.+-+.+...-|.-+.++...-......|+|+.|+++.+......--... +-...+.++
T Consensus 157 LRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAk 236 (531)
T COG3898 157 LRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAK 236 (531)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Confidence 3445555567799999999999999998988888777777777889999999888766553211111 111111111
Q ss_pred ---HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC
Q 024712 143 ---KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT 198 (263)
Q Consensus 143 ---~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 198 (263)
...-+...|......++++.|+...+-..-+..++..|+..++-.+++.+.+..|+
T Consensus 237 A~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH 295 (531)
T COG3898 237 AMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH 295 (531)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC
Confidence 12245677778888888888888777777788888888888888888888777775
No 263
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.58 E-value=0.025 Score=45.10 Aligned_cols=162 Identities=13% Similarity=-0.020 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHc----CChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCcHHHHHHHHHHHHhcCCCC-HHHHH
Q 024712 66 LYEQVSIAAMDC----QCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA----KGLWAEAEKAYSSLLEDNPLD-PVLHK 136 (263)
Q Consensus 66 ~~~~la~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~----~~~~~~A~~~~~~~~~~~p~~-~~~~~ 136 (263)
....++..+... .+..+|...+..+.+ ...+...+.+|..+.. ..+..+|..+|+++....... ..+..
T Consensus 75 a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~ 152 (292)
T COG0790 75 ALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMY 152 (292)
T ss_pred HHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 334445554432 457778888874433 4566777788888876 448888888888888764333 23366
Q ss_pred HHHHHHHHcC-------ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh----cccHHHHHHHHHHHHhhCCCCHHHHHH
Q 024712 137 RRVAIAKAQG-------NFPTAIEWLNKYLETFMADHDAWRELAEIYVS----LQMYKQAAFCYEELILSQPTVPLYHLA 205 (263)
Q Consensus 137 ~l~~~~~~~g-------~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~ 205 (263)
.++.++..-. +...|...|.++.... ++.+.+.+|.+|.. ..++.+|..+|.++-+... ...+..
T Consensus 153 ~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~ 228 (292)
T COG0790 153 RLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYN 228 (292)
T ss_pred HHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHH
Confidence 6777766541 2336788888777664 67778888877755 3478889999988888776 777777
Q ss_pred HHHHHHhcCCC------------CcHHHHHHHHHHhhccCC
Q 024712 206 YADVLYTLGGV------------DNILLAKKYYASTIDLTG 234 (263)
Q Consensus 206 la~~~~~~g~~------------~~~~~A~~~~~~al~~~~ 234 (263)
++ +++..|.. .+...|...+..+....+
T Consensus 229 ~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 229 LG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred HH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 87 66666620 126677777777665544
No 264
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=0.032 Score=46.57 Aligned_cols=164 Identities=12% Similarity=0.059 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCC-------cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-CH-
Q 024712 65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQ---FPE-------SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL-DP- 132 (263)
Q Consensus 65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~p~-------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~- 132 (263)
..++.++.+-+-.|++.+|++-+..+.+. .|. .+.+...+|......+-++.|...|..+.++-.. +.
T Consensus 324 ~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~ 403 (629)
T KOG2300|consen 324 ILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQ 403 (629)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHH
Confidence 34555677777789999999888777664 453 4566778888888899999999999999886433 22
Q ss_pred -HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC--
Q 024712 133 -VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD----------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV-- 199 (263)
Q Consensus 133 -~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 199 (263)
.+..+++.+|...|+-+.--+.++. +.|.+ ..+++..|...+.++++.+|.....+.++.....
T Consensus 404 a~~nlnlAi~YL~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~ 480 (629)
T KOG2300|consen 404 AFCNLNLAISYLRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDL 480 (629)
T ss_pred HHHHHhHHHHHHHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhH
Confidence 3556789999998876544333332 34432 3466778888899999999999999999876321
Q ss_pred ----HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCC
Q 024712 200 ----PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 234 (263)
Q Consensus 200 ----~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~ 234 (263)
......++.++.-.|+ ..++.+..+-++++..
T Consensus 481 ~rL~a~~LvLLs~v~lslgn---~~es~nmvrpamqlAk 516 (629)
T KOG2300|consen 481 NRLTACSLVLLSHVFLSLGN---TVESRNMVRPAMQLAK 516 (629)
T ss_pred HHHHHHHHHHHHHHHHHhcc---hHHHHhccchHHHHHh
Confidence 2245678899999999 8888887777776543
No 265
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.54 E-value=0.00025 Score=35.99 Aligned_cols=31 Identities=32% Similarity=0.418 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhhCCC
Q 024712 168 AWRELAEIYVSLQMYKQAAFCYEELILSQPT 198 (263)
Q Consensus 168 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 198 (263)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3445555555555555555555555555554
No 266
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.50 E-value=0.00034 Score=35.85 Aligned_cols=30 Identities=23% Similarity=0.235 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcC
Q 024712 134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFM 163 (263)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 163 (263)
++..+|.++...|++++|+..|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344555555555555555555555555555
No 267
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.46 E-value=0.025 Score=46.30 Aligned_cols=118 Identities=19% Similarity=0.091 Sum_probs=85.9
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC----CCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC------
Q 024712 129 PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM----ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT------ 198 (263)
Q Consensus 129 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------ 198 (263)
......+..++.+..+.|.++.|...+.++...++ ..+.+.+..+.+....|+..+|+..++..+.....
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 34456788889999999999999999988887542 14667777888889999999999988887761110
Q ss_pred ---------------------C-------HHHHHHHHHHHHhc------CCCCcHHHHHHHHHHhhccCCCcchhHHHhH
Q 024712 199 ---------------------V-------PLYHLAYADVLYTL------GGVDNILLAKKYYASTIDLTGGKNTKALFGI 244 (263)
Q Consensus 199 ---------------------~-------~~~~~~la~~~~~~------g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l 244 (263)
. ..++..+|...... +. .+++...|..+++.+|. ..++++.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~---~~~~~~~~~~a~~~~~~-~~k~~~~~ 298 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSES---SDEILKYYKEATKLDPS-WEKAWHSW 298 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhcccccccc---HHHHHHHHHHHHHhChh-HHHHHHHH
Confidence 1 12444555555555 55 89999999999999996 66677766
Q ss_pred HHHHhh
Q 024712 245 CLVMFV 250 (263)
Q Consensus 245 ~~~~~~ 250 (263)
+..+..
T Consensus 299 a~~~~~ 304 (352)
T PF02259_consen 299 ALFNDK 304 (352)
T ss_pred HHHHHH
Confidence 666544
No 268
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.43 E-value=0.0072 Score=44.32 Aligned_cols=124 Identities=7% Similarity=-0.022 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC--CCHH----HHH
Q 024712 134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQP--TVPL----YHL 204 (263)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~----~~~ 204 (263)
++..+|..|.+.|+.+.|++.|.++.+..... .+.++.+..+.+..+++.....+..++-..-. .++. ...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45555666666666666666666655443222 23445555555555666665555555543321 1221 223
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhhccCCC---cchhHHHhHHHHHhhchhhHHHHhh
Q 024712 205 AYADVLYTLGGVDNILLAKKYYASTIDLTGG---KNTKALFGICLVMFVCHSTTYERAE 260 (263)
Q Consensus 205 ~la~~~~~~g~~~~~~~A~~~~~~al~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~ 260 (263)
.-|..+...++ |.+|-+.|-.+..-... ..+-...-++....-|..+..+|.+
T Consensus 118 ~~gL~~l~~r~---f~~AA~~fl~~~~t~~~~~~~el~s~~d~a~Y~~l~aLat~~R~e 173 (177)
T PF10602_consen 118 YEGLANLAQRD---FKEAAELFLDSLSTFTSLQYTELISYNDFAIYGGLCALATLDRSE 173 (177)
T ss_pred HHHHHHHHhch---HHHHHHHHHccCcCCCCCchhhhcCHHHHHHHHHHHHHHhCCHHH
Confidence 34555556677 88888877776544331 2233333334333336666666654
No 269
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.43 E-value=0.0003 Score=36.70 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHH
Q 024712 169 WRELAEIYVSLQMYKQAAFCYEELI 193 (263)
Q Consensus 169 ~~~la~~~~~~g~~~~A~~~~~~al 193 (263)
|..||.+|...|++++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555555533
No 270
>PRK10941 hypothetical protein; Provisional
Probab=97.43 E-value=0.0039 Score=48.77 Aligned_cols=71 Identities=15% Similarity=0.069 Sum_probs=44.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHH
Q 024712 135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLA 205 (263)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 205 (263)
..++-.++...++++.|+.+.+..+...|+++.-+...|.+|.+.|.+..|...++..++..|+++.+...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 34455556666666666666666666666666666666666666666666666666666666666654433
No 271
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.42 E-value=0.0043 Score=43.30 Aligned_cols=85 Identities=21% Similarity=0.194 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 024712 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAK 143 (263)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 143 (263)
...+.......+..++.+++..++..+-...|+.+.+...-|.++...|+|.+|+.+++.+.+..+..+...-.++.|+.
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 34445555666678999999999999988999999999999999999999999999999999888777877777888888
Q ss_pred HcCCh
Q 024712 144 AQGNF 148 (263)
Q Consensus 144 ~~g~~ 148 (263)
..|+.
T Consensus 90 al~Dp 94 (153)
T TIGR02561 90 AKGDA 94 (153)
T ss_pred hcCCh
Confidence 88764
No 272
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=97.42 E-value=0.0017 Score=53.87 Aligned_cols=127 Identities=11% Similarity=0.124 Sum_probs=106.6
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHH
Q 024712 74 AMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIE 153 (263)
Q Consensus 74 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 153 (263)
.+..|+.-.|-+-+..++...|.+|......+.+....|+|+.+...+..+-..-.....+...+....+..|++++|..
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 35679999999999999999999999999999999999999999988877665544444555666777889999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH
Q 024712 154 WLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP 200 (263)
Q Consensus 154 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 200 (263)
...-.+...-.++++...-+.....+|-++++...+++++.++|...
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 99998887777788777667777788999999999999999987543
No 273
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.42 E-value=0.0017 Score=55.06 Aligned_cols=117 Identities=15% Similarity=0.142 Sum_probs=95.7
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCChhHHHHHHHHHHHhc
Q 024712 85 DCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP--VLHKRRVAIAKAQGNFPTAIEWLNKYLETF 162 (263)
Q Consensus 85 ~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 162 (263)
.++..+++..|.+......-+......|+..+|..++..++-..|... .++..+|.++.+.|...+|--++..++...
T Consensus 200 ~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA 279 (886)
T KOG4507|consen 200 HLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDA 279 (886)
T ss_pred HHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCC
Confidence 445556666676666666556666677999999999999998776543 477889999999999999999999998887
Q ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH
Q 024712 163 MADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL 201 (263)
Q Consensus 163 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 201 (263)
|.-..-++.++.++...|.+.....+|..+.+..|....
T Consensus 280 ~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q 318 (886)
T KOG4507|consen 280 DFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQ 318 (886)
T ss_pred ccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhH
Confidence 777777899999999999999999999999999886643
No 274
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.41 E-value=0.044 Score=43.72 Aligned_cols=153 Identities=13% Similarity=-0.023 Sum_probs=115.0
Q ss_pred HcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc----CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCC
Q 024712 76 DCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK----GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA----QGN 147 (263)
Q Consensus 76 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~ 147 (263)
..+++..+...+..+... .++.....++..+... .+..+|..+|+.+.+ ..++.+.+.+|.++.. ..+
T Consensus 53 ~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv~~d 128 (292)
T COG0790 53 YPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGVPLD 128 (292)
T ss_pred ccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCcccC
Confidence 456788888888877762 2335666777777654 568899999995554 5677888889999887 448
Q ss_pred hhHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcc-------cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-CCCCc
Q 024712 148 FPTAIEWLNKYLETFMAD-HDAWRELAEIYVSLQ-------MYKQAAFCYEELILSQPTVPLYHLAYADVLYTL-GGVDN 218 (263)
Q Consensus 148 ~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~ 218 (263)
..+|..+|+++.+..... ..+...+|.+|..-. +...|+..|.++-... ++.+...+|.+|..- |-..+
T Consensus 129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 129 LVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcC
Confidence 999999999999875443 344788888887642 3347999999888766 778899999888664 43445
Q ss_pred HHHHHHHHHHhhccCC
Q 024712 219 ILLAKKYYASTIDLTG 234 (263)
Q Consensus 219 ~~~A~~~~~~al~~~~ 234 (263)
+.+|..+|.++-+...
T Consensus 207 ~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 207 LKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHHHHHHHHHHHCCC
Confidence 9999999999998864
No 275
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.40 E-value=0.00037 Score=35.32 Aligned_cols=30 Identities=17% Similarity=0.328 Sum_probs=15.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCC
Q 024712 135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMA 164 (263)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 164 (263)
++.+|.++...|++++|+..|++++...|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444555555555555555555555555554
No 276
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.36 E-value=0.0072 Score=38.85 Aligned_cols=73 Identities=15% Similarity=0.043 Sum_probs=48.3
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCChhHHHHHHH
Q 024712 84 KDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD--PVLHKRRVAIAKAQGNFPTAIEWLN 156 (263)
Q Consensus 84 ~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (263)
+.-+++.+..+|++..+.+.+|..+...|++++|++.+-.++..+++. ..+...+..++...|.-+.....++
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~R 82 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYR 82 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHH
Confidence 456777788888888888888888888888888888888888887655 3455555555555555443333333
No 277
>PRK10941 hypothetical protein; Provisional
Probab=97.34 E-value=0.0045 Score=48.44 Aligned_cols=65 Identities=12% Similarity=-0.005 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 168 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 168 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
...++-.++...++++.|+.+.+..+.+.|+++.-+...|.+|.++|. +..|...++..++..|+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c---~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDC---EHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHhCCC
Confidence 456677888999999999999999999999999999999999999999 99999999999999987
No 278
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.30 E-value=0.0055 Score=40.47 Aligned_cols=46 Identities=11% Similarity=0.046 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 024712 116 EAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET 161 (263)
Q Consensus 116 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 161 (263)
.+++.+.++..+.|.....++.+|.-+-....|+++....++++..
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 4566677777777777666666666555555566666666666543
No 279
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.25 E-value=0.057 Score=47.25 Aligned_cols=149 Identities=18% Similarity=0.034 Sum_probs=111.9
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc-----CcHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcC---
Q 024712 80 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAK-----GLWAEAEKAYSSLLED-----NPLDPVLHKRRVAIAKAQG--- 146 (263)
Q Consensus 80 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~g--- 146 (263)
...|..+++.+... .+......+|.++..- .+.+.|+.+++.+.+. .-.++.+...+|.+|....
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 45677888777664 3566667777777654 6899999999999771 1124557788999998854
Q ss_pred --ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc---cHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc-CCCCcHH
Q 024712 147 --NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ---MYKQAAFCYEELILSQPTVPLYHLAYADVLYTL-GGVDNIL 220 (263)
Q Consensus 147 --~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~~~ 220 (263)
+...|+.++.++.+. .++.+.+.+|.++.... ++..|..+|..+.+. .+..+.+.+|.||..- |-..+..
T Consensus 306 ~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred cccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHH
Confidence 567799999998876 45667788999887755 578999999988764 4677888998888764 3344589
Q ss_pred HHHHHHHHhhccCC
Q 024712 221 LAKKYYASTIDLTG 234 (263)
Q Consensus 221 ~A~~~~~~al~~~~ 234 (263)
.|..+|.++.+.++
T Consensus 382 ~A~~~~k~aA~~g~ 395 (552)
T KOG1550|consen 382 LAFAYYKKAAEKGN 395 (552)
T ss_pred HHHHHHHHHHHccC
Confidence 99999999998874
No 280
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.19 E-value=0.0016 Score=50.87 Aligned_cols=109 Identities=9% Similarity=-0.013 Sum_probs=70.1
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHH----hc
Q 024712 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV----SL 179 (263)
Q Consensus 104 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~----~~ 179 (263)
.+.-....|+.++|..+|+.++.+.|++++++..+|.+....++.-+|-++|-+++.+.|.+.+++.+.+...- -.
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~plV~~iD 201 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTTPLVSAID 201 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccchHHHHHH
Confidence 34445566888888888888888888888888888888877788888888888888888888887766553321 12
Q ss_pred ccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHh
Q 024712 180 QMYKQAAFCYEELILSQP-TVPLYHLAYADVLYT 212 (263)
Q Consensus 180 g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~ 212 (263)
.++-..+....+.+..-+ .|......+-+.|+.
T Consensus 202 ~r~l~svdskrd~~~~i~~sN~ALRR~m~EtYf~ 235 (472)
T KOG3824|consen 202 RRMLRSVDSKRDEFNHIQHSNTALRRMMRETYFL 235 (472)
T ss_pred HHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 223333444333333333 334444445555553
No 281
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.19 E-value=0.0029 Score=35.99 Aligned_cols=36 Identities=19% Similarity=0.085 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHH
Q 024712 168 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYH 203 (263)
Q Consensus 168 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 203 (263)
.++.+|..+++.|+|++|..+.+.+++..|++..+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 455666666666666666666666666666665543
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.18 E-value=0.0013 Score=34.25 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=14.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHH
Q 024712 135 HKRRVAIAKAQGNFPTAIEWLNKYL 159 (263)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~l 159 (263)
+..+|.++...|++++|+.+|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455666666666666666666643
No 283
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.18 E-value=0.027 Score=39.43 Aligned_cols=73 Identities=16% Similarity=-0.021 Sum_probs=48.1
Q ss_pred HHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 024712 143 KAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 215 (263)
Q Consensus 143 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 215 (263)
...++.+++...+...--+.|+.+.+-..-|.++...|++.+|+..+.......+..+...-.++.|++.+|+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 3456666666666666666666666666666666666777777766666666666666666666666666666
No 284
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.18 E-value=0.0087 Score=46.95 Aligned_cols=69 Identities=16% Similarity=0.064 Sum_probs=49.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 024712 71 SIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV 139 (263)
Q Consensus 71 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 139 (263)
+.-....|+.++|..+|+.++...|++++++..+|.+....++.-+|-.+|-+++..+|.+..++.+.+
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 334455677777777777777777777777777777777777777777777777777777776665544
No 285
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.09 E-value=0.15 Score=43.71 Aligned_cols=179 Identities=9% Similarity=0.002 Sum_probs=135.2
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-CCCHHHHHHH
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN-PLDPVLHKRR 138 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l 138 (263)
.+.....|..-.......|+++.....+++.+--...-...|...+......|+.+-|-..+..+.... |..+..+..-
T Consensus 293 ~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~ 372 (577)
T KOG1258|consen 293 DQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLE 372 (577)
T ss_pred cHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHH
Confidence 334455566666666778999999999999887666777889999999999999999988888887754 7777888888
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHH---HHHHHHhhCCCC---HHHHHHHHHHHHh
Q 024712 139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAF---CYEELILSQPTV---PLYHLAYADVLYT 212 (263)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~---~~~~al~~~p~~---~~~~~~la~~~~~ 212 (263)
+.+....|+++.|...+++..+..|+...+-..-+.....+|..+.+.. ++.....-..+. .......+.....
T Consensus 373 a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 373 ARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 8888999999999999999998889988887777888888898888873 333322211111 2344555554443
Q ss_pred -cCCCCcHHHHHHHHHHhhccCCCcchhHHH
Q 024712 213 -LGGVDNILLAKKYYASTIDLTGGKNTKALF 242 (263)
Q Consensus 213 -~g~~~~~~~A~~~~~~al~~~~~~~~~~~~ 242 (263)
.++ .+.|...+..+++..|+ +...+.
T Consensus 453 i~~d---~~~a~~~l~~~~~~~~~-~k~~~~ 479 (577)
T KOG1258|consen 453 IRED---ADLARIILLEANDILPD-CKVLYL 479 (577)
T ss_pred HhcC---HHHHHHHHHHhhhcCCc-cHHHHH
Confidence 466 89999999999999986 544444
No 286
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.06 E-value=0.0012 Score=32.66 Aligned_cols=30 Identities=30% Similarity=0.442 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhhCC
Q 024712 168 AWRELAEIYVSLQMYKQAAFCYEELILSQP 197 (263)
Q Consensus 168 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p 197 (263)
++..+|.++...|++++|+.+++++++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344455555555555555555555554444
No 287
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.079 Score=48.37 Aligned_cols=158 Identities=12% Similarity=0.077 Sum_probs=104.7
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 024712 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI 141 (263)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 141 (263)
+.+.+|.++|.+.++.|...+|++.|-+ .++|..+.....+..+.|.|++-+.++.-+-+... .+.+-..+...
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyik-----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~-E~~id~eLi~A 1175 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIK-----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR-EPYIDSELIFA 1175 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHh-----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc-CccchHHHHHH
Confidence 3456677777777777888877777654 35666677777777777888877777776665432 22233344555
Q ss_pred HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHH
Q 024712 142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILL 221 (263)
Q Consensus 142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~ 221 (263)
|.+.++..+-...+ ..|+.+.. -..|.-++..|.|+.|.-+|.. ..-|..++..+..+|+ |+.
T Consensus 1176 yAkt~rl~elE~fi-----~gpN~A~i-~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~Lge---yQ~ 1238 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-----AGPNVANI-QQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGE---YQG 1238 (1666)
T ss_pred HHHhchHHHHHHHh-----cCCCchhH-HHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHH---HHH
Confidence 55666654433222 24555543 5678888899999988777753 3457789999999999 999
Q ss_pred HHHHHHHhhccCCCcchhHHHhHHHHH
Q 024712 222 AKKYYASTIDLTGGKNTKALFGICLVM 248 (263)
Q Consensus 222 A~~~~~~al~~~~~~~~~~~~~l~~~~ 248 (263)
|...-+++- ..+.|...+.+|
T Consensus 1239 AVD~aRKAn------s~ktWK~VcfaC 1259 (1666)
T KOG0985|consen 1239 AVDAARKAN------STKTWKEVCFAC 1259 (1666)
T ss_pred HHHHhhhcc------chhHHHHHHHHH
Confidence 998888763 345555544443
No 288
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.98 E-value=0.0015 Score=51.06 Aligned_cols=85 Identities=14% Similarity=0.128 Sum_probs=52.3
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCChhHHHHHHHHHHHhcCCC
Q 024712 87 IKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR-RVAIAKAQGNFPTAIEWLNKYLETFMAD 165 (263)
Q Consensus 87 ~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 165 (263)
+.++...+|+++..|...+......|-+.+-...|.+++..+|.+.+.|.. -+.-+...++++.+...+.++++.+|.+
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~ 175 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS 175 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence 445555566666666666666666666666666666666666666666544 3334445566666666666666666666
Q ss_pred HHHHHH
Q 024712 166 HDAWRE 171 (263)
Q Consensus 166 ~~~~~~ 171 (263)
+..|..
T Consensus 176 p~iw~e 181 (435)
T COG5191 176 PRIWIE 181 (435)
T ss_pred chHHHH
Confidence 666644
No 289
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.97 E-value=0.087 Score=43.35 Aligned_cols=140 Identities=19% Similarity=0.068 Sum_probs=103.1
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------------C------------CcHH---HHHHHHHHHHH
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF--------------P------------ESKR---VGRLEGILLEA 110 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------------p------------~~~~---~~~~~a~~~~~ 110 (263)
.|-..+++.+++.++..+|+...|.+++++++=.. + .|-. +.+.....+.+
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~ 115 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR 115 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence 77889999999999999999999999998885421 1 1111 23344556778
Q ss_pred cCcHHHHHHHHHHHHhcCCC-CHHH-HHHHHHHHHHcCChhHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHhcccH-
Q 024712 111 KGLWAEAEKAYSSLLEDNPL-DPVL-HKRRVAIAKAQGNFPTAIEWLNKYLETFMA-----DHDAWRELAEIYVSLQMY- 182 (263)
Q Consensus 111 ~~~~~~A~~~~~~~~~~~p~-~~~~-~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~~~g~~- 182 (263)
.|-+..|.++.+-+++++|. ++.. ...+-....+.++++--+..++........ -|..-+..+.+++..++-
T Consensus 116 RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~ 195 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEE 195 (360)
T ss_pred cCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCcc
Confidence 89999999999999999998 7754 444444446677887777777766552111 234567778888888887
Q ss_pred --------------HHHHHHHHHHHhhCCCC
Q 024712 183 --------------KQAAFCYEELILSQPTV 199 (263)
Q Consensus 183 --------------~~A~~~~~~al~~~p~~ 199 (263)
+.|...+.+|+...|.-
T Consensus 196 ~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 196 SSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred ccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 89999999999887753
No 290
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.95 E-value=0.002 Score=50.35 Aligned_cols=78 Identities=9% Similarity=-0.011 Sum_probs=47.5
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHH-HHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 024712 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRL-EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRV 139 (263)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 139 (263)
.++.+|.+.+......|.+.+--.++.+++..+|.+++.|.. -+.-++..++++.+...+.+++..+|.+|..|...-
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 344444444444445566666666777777777776666654 344455566777777777777777777766655433
No 291
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.90 E-value=0.0076 Score=34.32 Aligned_cols=32 Identities=22% Similarity=0.148 Sum_probs=13.5
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHH
Q 024712 102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV 133 (263)
Q Consensus 102 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 133 (263)
+.+|..+.+.|+|++|..+.+.+++..|++..
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 33444444444444444444444444444443
No 292
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.90 E-value=0.26 Score=43.21 Aligned_cols=145 Identities=15% Similarity=0.040 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHH-----cCChHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHc----C-cHHHHHHHHHHHHhcCC
Q 024712 65 TLYEQVSIAAMD-----CQCLDVAKDCIKVLQKQ-----FPESKRVGRLEGILLEAK----G-LWAEAEKAYSSLLEDNP 129 (263)
Q Consensus 65 ~~~~~la~~~~~-----~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~a~~~~~~----~-~~~~A~~~~~~~~~~~p 129 (263)
.....++.++.. ..|.+.|+.+++.+... .-..+.+...+|.+|..- . +++.|+.+|.++-+..
T Consensus 245 ~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g- 323 (552)
T KOG1550|consen 245 EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG- 323 (552)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-
Confidence 334445555544 36899999999998772 112455677889999884 3 7788999999998764
Q ss_pred CCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc----ccHHHHHHHHHHHHhhCCCCHHH
Q 024712 130 LDPVLHKRRVAIAKAQG---NFPTAIEWLNKYLETFMADHDAWRELAEIYVSL----QMYKQAAFCYEELILSQPTVPLY 202 (263)
Q Consensus 130 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~ 202 (263)
++.+.+.+|.++.... ++..|..+|..+... .+..+.+.+|.+|..- -+...|..+++++-+.+ .+.+
T Consensus 324 -~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A 398 (552)
T KOG1550|consen 324 -NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSA 398 (552)
T ss_pred -CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--Chhh
Confidence 5667778888887765 567999999998764 5678889999988653 47889999999999887 4555
Q ss_pred HHHHHHHHHhc-CC
Q 024712 203 HLAYADVLYTL-GG 215 (263)
Q Consensus 203 ~~~la~~~~~~-g~ 215 (263)
...++..+... +.
T Consensus 399 ~~~~~~~~~~g~~~ 412 (552)
T KOG1550|consen 399 AYLLGAFYEYGVGR 412 (552)
T ss_pred HHHHHHHHHHcccc
Confidence 56665555444 44
No 293
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.2 Score=41.13 Aligned_cols=161 Identities=12% Similarity=0.155 Sum_probs=113.0
Q ss_pred ChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHH------------HHHcCChHHHHHHHHHHHHhCCCcHHHHHHHH
Q 024712 38 RPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIA------------AMDCQCLDVAKDCIKVLQKQFPESKRVGRLEG 105 (263)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~------------~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a 105 (263)
-.++++.+...++.. +|+...+|...-.+ ...+.-+++-+.+...++..+|++..+|..+.
T Consensus 44 yd~e~l~lt~~ll~~-------npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~ 116 (421)
T KOG0529|consen 44 YDEEHLELTSELLEK-------NPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRK 116 (421)
T ss_pred cchHHHHHHHHHHhh-------CchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 356778888888877 66655554432111 11223456677888899999999999999999
Q ss_pred HHHHHcC--cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----CChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-
Q 024712 106 ILLEAKG--LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ----GNFPTAIEWLNKYLETFMADHDAWRELAEIYVS- 178 (263)
Q Consensus 106 ~~~~~~~--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~- 178 (263)
.++.+.+ ++..=+.+..++++.+|.+..+|...-.+.... ....+=+++..+++..++.+..+|.....+.-.
T Consensus 117 w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l 196 (421)
T KOG0529|consen 117 WVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTL 196 (421)
T ss_pred HHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHh
Confidence 9998776 467888999999999999887665443333322 225666788899999999999999887766542
Q ss_pred -----cc------cHHHHHHHHHHHHhhCCCCHHHHHH
Q 024712 179 -----LQ------MYKQAAFCYEELILSQPTVPLYHLA 205 (263)
Q Consensus 179 -----~g------~~~~A~~~~~~al~~~p~~~~~~~~ 205 (263)
.| ....-+.....++-.+|++..+|..
T Consensus 197 ~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY 234 (421)
T KOG0529|consen 197 HPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFY 234 (421)
T ss_pred ccccccCccCCHHHHHHHHHHHHHHHhcCccccceeee
Confidence 23 1234456667777889988877655
No 294
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=96.82 E-value=0.032 Score=51.88 Aligned_cols=163 Identities=15% Similarity=0.035 Sum_probs=123.7
Q ss_pred HHHHHHHHHHcCChHHHHH------HHH-HHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--------CCCC
Q 024712 67 YEQVSIAAMDCQCLDVAKD------CIK-VLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED--------NPLD 131 (263)
Q Consensus 67 ~~~la~~~~~~~~~~~A~~------~~~-~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~ 131 (263)
..+.+......|.+.+|.+ ++. ..-..+|.....+..++.++...|++++|+..-.++.-. .|+.
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 3445666677788887777 555 333456788899999999999999999999988777543 2444
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC------
Q 024712 132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLET--------FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP------ 197 (263)
Q Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------ 197 (263)
...+.+++...+..+....|...+.++... .|.......+++.++...++++.|+.+.+.|+..+.
T Consensus 1015 ~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~ 1094 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPK 1094 (1236)
T ss_pred HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCcc
Confidence 567788888889999999999999998864 455566677889999999999999999999997542
Q ss_pred --CCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712 198 --TVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (263)
Q Consensus 198 --~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~ 232 (263)
.....+..+++.+...++ +..|..+.+....+
T Consensus 1095 ~l~~~~~~~~~a~l~~s~~d---fr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1095 ELETALSYHALARLFESMKD---FRNALEHEKVTYGI 1128 (1236)
T ss_pred chhhhhHHHHHHHHHhhhHH---HHHHHHHHhhHHHH
Confidence 223456677888888888 77777666655543
No 295
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.1 Score=44.66 Aligned_cols=127 Identities=15% Similarity=-0.068 Sum_probs=68.7
Q ss_pred HHHHHHHHHHhCCCcHHHHHH--HHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHH-HH
Q 024712 83 AKDCIKVLQKQFPESKRVGRL--EGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK-YL 159 (263)
Q Consensus 83 A~~~~~~~~~~~p~~~~~~~~--~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~l 159 (263)
++..+...+..+|.++.+... +...+...+....+......++..+|.+..++.+++......|....+...+.. +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 333344444445555544322 244455556666666666666666666666666666666555554444444433 55
Q ss_pred HhcCCCHHHHHHH------HHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024712 160 ETFMADHDAWREL------AEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV 209 (263)
Q Consensus 160 ~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 209 (263)
...|++......+ +......|+..++....+++....|.++.+...+...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 5556655443333 5555555666666666666666666665554444443
No 296
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.76 E-value=0.31 Score=41.94 Aligned_cols=148 Identities=13% Similarity=0.080 Sum_probs=111.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 024712 67 YEQVSIAAMDCQCLDVAKDCIKVLQKQF-PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ 145 (263)
Q Consensus 67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 145 (263)
|...+.-....|+.+-|...+..+.+.+ |..+.+...-+.+-...|++..|...++++.+.-|+...+-...+......
T Consensus 334 Wiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~ 413 (577)
T KOG1258|consen 334 WIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRK 413 (577)
T ss_pred HHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHh
Confidence 3334444445599998988888888876 678888888999999999999999999999998899888888888888999
Q ss_pred CChhHHHH---HHHHHHHhcCCC----HHHHHHHHHH-HHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 024712 146 GNFPTAIE---WLNKYLETFMAD----HDAWRELAEI-YVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 215 (263)
Q Consensus 146 g~~~~A~~---~~~~~l~~~p~~----~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 215 (263)
|+.+.+.. .+..... ...+ ...+...+.. +.-.++.+.|...+.+++...|.+...+..+-.+....+.
T Consensus 414 ~~~~~~~~~~~l~s~~~~-~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 414 GNLEDANYKNELYSSIYE-GKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred cchhhhhHHHHHHHHhcc-cccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 99888874 2222221 1111 2233344433 3456889999999999999999998888888887777664
No 297
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.21 Score=42.87 Aligned_cols=133 Identities=17% Similarity=-0.036 Sum_probs=101.6
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHH--HHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHH
Q 024712 113 LWAEAEKAYSSLLEDNPLDPVLHKR--RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYE 190 (263)
Q Consensus 113 ~~~~A~~~~~~~~~~~p~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 190 (263)
.-.-++..+...+..+|.++..+.. +...+...+....+...+..++..+|.+..+..+|+......|..-.+...+.
T Consensus 46 ~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~ 125 (620)
T COG3914 46 LQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADIS 125 (620)
T ss_pred chhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3333666666667778888875433 46666777888899999999999999999999999988887776665555555
Q ss_pred H-HHhhCCCCHHHHHHH------HHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHh
Q 024712 191 E-LILSQPTVPLYHLAY------ADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMF 249 (263)
Q Consensus 191 ~-al~~~p~~~~~~~~l------a~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~ 249 (263)
. +....|.+......+ +.....+|+ ..++.....++..+.|. +.+..-+++....
T Consensus 126 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~l~~~~d~~p~-~~~~~~~~~~~r~ 187 (620)
T COG3914 126 EIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGR---TAEAELALERAVDLLPK-YPRVLGALMTARQ 187 (620)
T ss_pred HHHHhcCcchHHHHhhHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhhhh-hhhhHhHHHHHHH
Confidence 4 888889887655444 888888899 99999999999999986 6666666665533
No 298
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=0.18 Score=42.31 Aligned_cols=153 Identities=14% Similarity=0.055 Sum_probs=109.0
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-c--HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC-------H
Q 024712 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPE-S--KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD-------P 132 (263)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~-------~ 132 (263)
.+.+..-+|......+.++.|...|..+.+.... + +.+..++|..|.+.|+-+.--+.++.+-..+... .
T Consensus 366 ~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a 445 (629)
T KOG2300|consen 366 EAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEA 445 (629)
T ss_pred HHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHH
Confidence 4566677888888899999999999999887542 2 3445678999999888665555555443332111 2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhC---CCCHH--
Q 024712 133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQ---PTVPL-- 201 (263)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~~-- 201 (263)
.+++..|...+.++++.+|...+.+.++..... .-.+..||.+....|+..++.+...-++.+. |+-+.
T Consensus 446 ~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqL 525 (629)
T KOG2300|consen 446 SILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQL 525 (629)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHH
Confidence 366778888899999999999999999875211 2235668899999999999999888887664 34333
Q ss_pred -HHHHHHHHHHhcCC
Q 024712 202 -YHLAYADVLYTLGG 215 (263)
Q Consensus 202 -~~~~la~~~~~~g~ 215 (263)
....+-.++...|+
T Consensus 526 ws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 526 WSSSILTDLYQALGE 540 (629)
T ss_pred HHHHHHHHHHHHhCc
Confidence 22334566667776
No 299
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.61 E-value=0.0053 Score=30.18 Aligned_cols=28 Identities=29% Similarity=0.223 Sum_probs=12.5
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHhcCC
Q 024712 102 RLEGILLEAKGLWAEAEKAYSSLLEDNP 129 (263)
Q Consensus 102 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p 129 (263)
..+|.++...+++++|+..++++++.+|
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3444444444444444444444444433
No 300
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.60 E-value=0.067 Score=39.24 Aligned_cols=98 Identities=14% Similarity=0.002 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC--CCHH----HH
Q 024712 99 RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD---PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM--ADHD----AW 169 (263)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p--~~~~----~~ 169 (263)
.++..+|..|.+.|+.++|++.|.++....... .+.+..+..+.+..+++......+.++-.... .+.. .-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 355567777777777777777777766543222 24556667777777777777777776655422 2221 23
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhC
Q 024712 170 RELAEIYVSLQMYKQAAFCYEELILSQ 196 (263)
Q Consensus 170 ~~la~~~~~~g~~~~A~~~~~~al~~~ 196 (263)
..-|..+...++|..|...|-.+....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 345667777889999988887766443
No 301
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.57 E-value=0.028 Score=46.98 Aligned_cols=124 Identities=16% Similarity=0.088 Sum_probs=100.8
Q ss_pred HHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHH
Q 024712 109 EAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC 188 (263)
Q Consensus 109 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 188 (263)
...|+...|-.-+..++...|.+|......+.+....|+|+.+...+..+-..-.....+...+-...+.+|++++|...
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 34588888888889999999999988888899999999999999888766555444445555566677889999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 189 YEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 189 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
..-.+.-.-.++.+...-+-....+|- ++++..++++.+.++|.
T Consensus 380 a~~~l~~eie~~ei~~iaa~sa~~l~~---~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 380 AEMMLSNEIEDEEVLTVAAGSADALQL---FDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHhccccCChhheeeecccHHHHhH---HHHHHHHHHHHhccCCh
Confidence 888887777777776666666667777 99999999999999986
No 302
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.55 E-value=0.011 Score=49.63 Aligned_cols=92 Identities=22% Similarity=0.083 Sum_probs=73.4
Q ss_pred HHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHH
Q 024712 108 LEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG---NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQ 184 (263)
Q Consensus 108 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 184 (263)
.+..+.+..|+..|.+++...|.....+.+.+.++++.+ +.-.|+.....+++++|....+|+.|+.++...+++.+
T Consensus 384 ~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~e 463 (758)
T KOG1310|consen 384 GLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLE 463 (758)
T ss_pred hhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHH
Confidence 344466778888888888888888888888888887753 44556777777888888888999999999999999999
Q ss_pred HHHHHHHHHhhCCCC
Q 024712 185 AAFCYEELILSQPTV 199 (263)
Q Consensus 185 A~~~~~~al~~~p~~ 199 (263)
|+.+...+....|.+
T Consensus 464 al~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 464 ALSCHWALQMSFPTD 478 (758)
T ss_pred hhhhHHHHhhcCchh
Confidence 998888877777754
No 303
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.53 E-value=0.0049 Score=46.18 Aligned_cols=59 Identities=25% Similarity=0.178 Sum_probs=37.9
Q ss_pred HHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH
Q 024712 108 LEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH 166 (263)
Q Consensus 108 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 166 (263)
....++.+.|.+.|.+++.+.|.....|+.+|....+.|+++.|...|+++++++|.+.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 34456666666666666666666666666666666666666666666666666666553
No 304
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.52 E-value=0.3 Score=40.76 Aligned_cols=121 Identities=12% Similarity=0.099 Sum_probs=80.2
Q ss_pred HHHHHHHHcCC-hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHH--HHH------HHHh---cCCC---CHH
Q 024712 69 QVSIAAMDCQC-LDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEK--AYS------SLLE---DNPL---DPV 133 (263)
Q Consensus 69 ~la~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~--~~~------~~~~---~~p~---~~~ 133 (263)
.-|.-+.+.|. -++|+.+++.+++..|.+....... ..+-...|..|+. .+. ..++ +.|- +..
T Consensus 384 ~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v--~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~e 461 (549)
T PF07079_consen 384 FGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIV--FLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEE 461 (549)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHH--HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHH
Confidence 34666777777 7889999999998888665433211 1111222333322 111 2221 1222 222
Q ss_pred HHH--HHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 024712 134 LHK--RRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEEL 192 (263)
Q Consensus 134 ~~~--~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 192 (263)
.-+ .=|..++..|++.++..+-.=..++.| ++.++..+|.+.+...+|++|..++...
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 222 335567889999999988888889999 8999999999999999999999998653
No 305
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.52 E-value=0.18 Score=36.38 Aligned_cols=135 Identities=16% Similarity=0.092 Sum_probs=72.6
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCC
Q 024712 74 AMDCQCLDVAKDCIKVLQKQFPES--KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP----VLHKRRVAIAKAQGN 147 (263)
Q Consensus 74 ~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~ 147 (263)
+...+..++|+.-|..+-+..-.+ ..+....+.+....|+-..|+..|..+-...|... .+...-+.++...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 344566666766666655543221 23344556666666777777777776655433211 233444555566666
Q ss_pred hhHHHHHHHHHH-HhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 024712 148 FPTAIEWLNKYL-ETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADV 209 (263)
Q Consensus 148 ~~~A~~~~~~~l-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 209 (263)
|+......+..- ..+|-...+...||..-++.|++.+|...|.+... +...|....+.+++
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ 209 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQI 209 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHH
Confidence 666544444322 22344445556666666677777777777766654 33334444444443
No 306
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.48 E-value=0.13 Score=34.57 Aligned_cols=85 Identities=13% Similarity=0.103 Sum_probs=48.4
Q ss_pred HHcCcHHHHHHHHHHHHhcCCCC------------HHHHHHHHHHHHHcCChhHHHHHHHHHHHh-------cCCCHHHH
Q 024712 109 EAKGLWAEAEKAYSSLLEDNPLD------------PVLHKRRVAIAKAQGNFPTAIEWLNKYLET-------FMADHDAW 169 (263)
Q Consensus 109 ~~~~~~~~A~~~~~~~~~~~p~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-------~p~~~~~~ 169 (263)
...|-|++|...++++++...+- ..++..++..+..+|+|++++....+++.. +.+....|
T Consensus 20 l~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklW 99 (144)
T PF12968_consen 20 LQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLW 99 (144)
T ss_dssp HHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhH
Confidence 34467777777777777643211 225556666777777777776666666643 33333333
Q ss_pred ----HHHHHHHHhcccHHHHHHHHHHHH
Q 024712 170 ----RELAEIYVSLQMYKQAAFCYEELI 193 (263)
Q Consensus 170 ----~~la~~~~~~g~~~~A~~~~~~al 193 (263)
+..|..+...|+.++|+..|+.+-
T Consensus 100 IaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 100 IAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 345566666677777766666554
No 307
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.40 E-value=0.075 Score=36.53 Aligned_cols=54 Identities=15% Similarity=0.121 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHh-cCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHH
Q 024712 115 AEAEKAYSSLLE-DNPLD-PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDA 168 (263)
Q Consensus 115 ~~A~~~~~~~~~-~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 168 (263)
.+.+.+++.+++ .+|.. .+..+.++.-+++.++|+.++.+.+..++..|++..+
T Consensus 52 ~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 52 QEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred HHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 344444444443 22222 1334444444444555555555555555554444433
No 308
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.34 E-value=0.011 Score=44.40 Aligned_cols=61 Identities=25% Similarity=0.248 Sum_probs=49.0
Q ss_pred HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH
Q 024712 141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL 201 (263)
Q Consensus 141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 201 (263)
.....++.+.+.+.|.+++++.|.....|+.+|....+.|+++.|...|++.++++|.+..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 4456677888888888888888888888888888888888888888888888888887643
No 309
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.33 E-value=0.39 Score=38.13 Aligned_cols=124 Identities=15% Similarity=0.030 Sum_probs=91.9
Q ss_pred HHHcCChHHHHHHHHHHHHhC-CCc-------HHHHHHHHHHHHHcC-cHHHHHHHHHHHHhc----CC---CC------
Q 024712 74 AMDCQCLDVAKDCIKVLQKQF-PES-------KRVGRLEGILLEAKG-LWAEAEKAYSSLLED----NP---LD------ 131 (263)
Q Consensus 74 ~~~~~~~~~A~~~~~~~~~~~-p~~-------~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~----~p---~~------ 131 (263)
....|+++.|..++.++-... ..+ ....+..|......+ ++++|..+++++++. .+ ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 467899999999999998765 322 345667777788889 999999999999886 21 11
Q ss_pred -HHHHHHHHHHHHHcCChh---HHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC
Q 024712 132 -PVLHKRRVAIAKAQGNFP---TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 197 (263)
Q Consensus 132 -~~~~~~l~~~~~~~g~~~---~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 197 (263)
..++..++.++...+.++ +|...++.+-...|+.+..+..--.+....++.+.+.+.+.+++..-+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 236677888888877654 455555556566788787775555555568899999999999987655
No 310
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.32 E-value=0.093 Score=36.08 Aligned_cols=73 Identities=12% Similarity=0.020 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHcC---ChhHHHHHHHHHHH-hcCCC-HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHH
Q 024712 132 PVLHKRRVAIAKAQG---NFPTAIEWLNKYLE-TFMAD-HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL 204 (263)
Q Consensus 132 ~~~~~~l~~~~~~~g---~~~~A~~~~~~~l~-~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 204 (263)
....++++.++.... +..+.+.+++..++ ..|.. -+..+.|+..+++.++|+.++.+...+++..|++..+..
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 456677787777654 45678899999986 44443 467788999999999999999999999999999877643
No 311
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.24 E-value=0.44 Score=37.80 Aligned_cols=153 Identities=14% Similarity=0.115 Sum_probs=101.8
Q ss_pred HHHHHHHhcCccccc-ccCcc----hHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhC----C---Cc-------HHHHH
Q 024712 43 LRHGLSILNDPKKRS-ALGPD----VWTLYEQVSIAAMDCQ-CLDVAKDCIKVLQKQF----P---ES-------KRVGR 102 (263)
Q Consensus 43 ~~~~~~~~~~~~~~~-~~~~~----~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~----p---~~-------~~~~~ 102 (263)
.+++..+..+.+... ..+|+ ...++++.|...+..+ +++.|...++++.+.. + .. ..++.
T Consensus 9 ~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~ 88 (278)
T PF08631_consen 9 LDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILR 88 (278)
T ss_pred HHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHH
Confidence 456666666544444 45664 4566778899999999 9999999999998872 1 11 23566
Q ss_pred HHHHHHHHcCcH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHH--H
Q 024712 103 LEGILLEAKGLW---AEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIY--V 177 (263)
Q Consensus 103 ~~a~~~~~~~~~---~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~--~ 177 (263)
.++.++...+.+ ++|..+++.+....|+.+..+...-.++...++.+.+.+.+.+.+...+-....+.....++ +
T Consensus 89 ~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l 168 (278)
T PF08631_consen 89 LLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQL 168 (278)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 788888887764 45666777777777888877766666666688999999999999976542222222222222 2
Q ss_pred hcccHHHHHHHHHHHHhh
Q 024712 178 SLQMYKQAAFCYEELILS 195 (263)
Q Consensus 178 ~~g~~~~A~~~~~~al~~ 195 (263)
.......|..++...+..
T Consensus 169 ~~~~~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 169 AEKSPELAAFCLDYLLLN 186 (278)
T ss_pred HhhCcHHHHHHHHHHHHH
Confidence 234456677777776643
No 312
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.21 E-value=0.028 Score=47.41 Aligned_cols=98 Identities=13% Similarity=-0.017 Sum_probs=81.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 024712 70 VSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAK---GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG 146 (263)
Q Consensus 70 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~---~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 146 (263)
-+.-.+..+....++..+.++++..|+....+...+.++... |+.-.|+.-...++.++|....+++.++.++...+
T Consensus 380 egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~ 459 (758)
T KOG1310|consen 380 EGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELT 459 (758)
T ss_pred hccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHh
Confidence 344444456677889999999999999988888888888765 56667788888889999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhcCCCHH
Q 024712 147 NFPTAIEWLNKYLETFMADHD 167 (263)
Q Consensus 147 ~~~~A~~~~~~~l~~~p~~~~ 167 (263)
++.+|+.+...+...+|.+..
T Consensus 460 r~~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 460 RYLEALSCHWALQMSFPTDVA 480 (758)
T ss_pred hHHHhhhhHHHHhhcCchhhh
Confidence 999999999988888886643
No 313
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.1 Score=45.18 Aligned_cols=97 Identities=14% Similarity=0.066 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHH
Q 024712 65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES------KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRR 138 (263)
Q Consensus 65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 138 (263)
.++.+-|...++..+|..+++.|...+...|.+ +.....++.+|....+.+.|.++++++-+.+|.++-.-...
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 344556777889999999999999999887743 45667889999999999999999999999999998877777
Q ss_pred HHHHHHcCChhHHHHHHHHHHHh
Q 024712 139 VAIAKAQGNFPTAIEWLNKYLET 161 (263)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~l~~ 161 (263)
-.+....|.-++|+.+..+....
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhh
Confidence 77778889999999888876654
No 314
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.10 E-value=0.095 Score=39.71 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHh
Q 024712 99 RVGRLEGILLEAKGLWAEAEKAYSSLLE 126 (263)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 126 (263)
.+.+++|.+..+.|++++|..+|.+++.
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 3444445555555555555555555544
No 315
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.09 E-value=0.31 Score=41.38 Aligned_cols=118 Identities=19% Similarity=0.204 Sum_probs=63.0
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHH
Q 024712 73 AAMDCQCLDVAKDCIKVLQKQFPES-KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTA 151 (263)
Q Consensus 73 ~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 151 (263)
...-.++++++.++... -+..|.- .......+..+...|-.+.|+.+ ..++...+.++ .+.|+.+.|
T Consensus 270 ~av~~~d~~~v~~~i~~-~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~--------~~D~~~rFeLA---l~lg~L~~A 337 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAA-SNLLPNIPKDQGQSIARFLEKKGYPELALQF--------VTDPDHRFELA---LQLGNLDIA 337 (443)
T ss_dssp HHHHTT-HHH-----HH-HHTGGG--HHHHHHHHHHHHHTT-HHHHHHH--------SS-HHHHHHHH---HHCT-HHHH
T ss_pred HHHHcCChhhhhhhhhh-hhhcccCChhHHHHHHHHHHHCCCHHHHHhh--------cCChHHHhHHH---HhcCCHHHH
Confidence 33556888887777641 1222322 23345566677777777777654 23344444444 467777777
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 024712 152 IEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 215 (263)
Q Consensus 152 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 215 (263)
.+..++ .+++..|..||.....+|+++-|..+|+++-. +..|..+|...|+
T Consensus 338 ~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~ 388 (443)
T PF04053_consen 338 LEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGD 388 (443)
T ss_dssp HHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-
T ss_pred HHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCC
Confidence 655432 24667788888888888888888888876532 2334445555555
No 316
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.03 E-value=0.87 Score=39.26 Aligned_cols=158 Identities=16% Similarity=0.072 Sum_probs=112.3
Q ss_pred cCChHHHHHHHHHHHHhC------------CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-----------------
Q 024712 77 CQCLDVAKDCIKVLQKQF------------PESKRVGRLEGILLEAKGLWAEAEKAYSSLLED----------------- 127 (263)
Q Consensus 77 ~~~~~~A~~~~~~~~~~~------------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------- 127 (263)
...|++|...|.-+.... |-+...+..++.+...+|+.+.|....++++-.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 356778888888777754 345567888999999999999888888887641
Q ss_pred ----CCCCHH---HHHHHHHHHHHcCChhHHHHHHHHHHHhcCC-CHHHHHHHHHHHH-hcccHHHHHHHHHHH-----H
Q 024712 128 ----NPLDPV---LHKRRVAIAKAQGNFPTAIEWLNKYLETFMA-DHDAWRELAEIYV-SLQMYKQAAFCYEEL-----I 193 (263)
Q Consensus 128 ----~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~-~~g~~~~A~~~~~~a-----l 193 (263)
.|.|-. +.+.....+.+.|-+..|.++++-.+.++|. +|-+...+..+|. ...+|+--|..++.. +
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 222222 3344555667789999999999999999999 8877777776664 467788777777765 3
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 194 LSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 194 ~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
...|+.+ .-..+|..|.........+.|...+.+|+...|.
T Consensus 411 ~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 411 SQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred hhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 3445432 2345566665555433467899999999998884
No 317
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.00 E-value=0.021 Score=30.37 Aligned_cols=28 Identities=29% Similarity=0.272 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 024712 168 AWRELAEIYVSLQMYKQAAFCYEELILS 195 (263)
Q Consensus 168 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 195 (263)
++.++|.+|...|++++|..++++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4556666666666666666666666543
No 318
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.98 E-value=0.14 Score=44.49 Aligned_cols=95 Identities=15% Similarity=0.111 Sum_probs=79.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024712 135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYAD 208 (263)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 208 (263)
+.+-+.-.++..+|..+++.|...+...|.| ......++.||..+.+.+.|.+++++|-+.+|.++.....+-.
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 3455667788889999999999999887766 4456788999999999999999999999999999988888888
Q ss_pred HHHhcCCCCcHHHHHHHHHHhhcc
Q 024712 209 VLYTLGGVDNILLAKKYYASTIDL 232 (263)
Q Consensus 209 ~~~~~g~~~~~~~A~~~~~~al~~ 232 (263)
+....|. -++|+.........
T Consensus 437 ~~~~E~~---Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 437 SFLAEDK---SEEALTCLQKIKSS 457 (872)
T ss_pred HHHHhcc---hHHHHHHHHHHHhh
Confidence 8888888 88888887766543
No 319
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.95 E-value=0.57 Score=36.51 Aligned_cols=172 Identities=12% Similarity=0.023 Sum_probs=103.2
Q ss_pred HcCChHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-----CC-CHHHHHHHHHHHHHc
Q 024712 76 DCQCLDVAKDCIKVLQKQFPESK----RVGRLEGILLEAKGLWAEAEKAYSSLLEDN-----PL-DPVLHKRRVAIAKAQ 145 (263)
Q Consensus 76 ~~~~~~~A~~~~~~~~~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p~-~~~~~~~l~~~~~~~ 145 (263)
...+.++|+..|++.++..|... .++..+..+.++.++|++-.+.|++.+.-- .+ +......+-..-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 44689999999999999988543 345667788899999998888888776521 11 111222222222222
Q ss_pred CChhHHHHHHHHHHHh--cCCCHHHHH----HHHHHHHhcccHHHHHHHHHHHHhhCCCC------------HHHHHHHH
Q 024712 146 GNFPTAIEWLNKYLET--FMADHDAWR----ELAEIYVSLQMYKQAAFCYEELILSQPTV------------PLYHLAYA 207 (263)
Q Consensus 146 g~~~~A~~~~~~~l~~--~p~~~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~la 207 (263)
.+.+---.+|+..+.. +..+...|+ .||.+|+..|+|.+-.+.+++.-.....+ ..++..--
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 3333333444443332 223334443 68999999999998888777765432211 11333334
Q ss_pred HHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 208 DVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 208 ~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
+.|-...+ ..+-...|++++.+.....-....|.+.-|.+
T Consensus 199 QmYT~qKn---NKkLK~lYeqalhiKSAIPHPlImGvIRECGG 238 (440)
T KOG1464|consen 199 QMYTEQKN---NKKLKALYEQALHIKSAIPHPLIMGVIRECGG 238 (440)
T ss_pred hhhhhhcc---cHHHHHHHHHHHHhhccCCchHHHhHHHHcCC
Confidence 56666666 67777889999887554222344566666555
No 320
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.89 E-value=0.1 Score=40.49 Aligned_cols=69 Identities=17% Similarity=0.158 Sum_probs=49.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHH
Q 024712 136 KRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL 204 (263)
Q Consensus 136 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 204 (263)
.++=..+...++++.|..+.++.+..+|.++.-+.-.|.+|...|.+..|+..++..+...|+++.+-.
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 334445566677777777777777777777777777777777777777777777777777777765433
No 321
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.89 E-value=0.099 Score=39.61 Aligned_cols=84 Identities=19% Similarity=0.136 Sum_probs=42.4
Q ss_pred CcHHHHHHHHHHHHhc----CCCC---HHHHHHHHHHHHHcCChhH-------HHHHHHHHHHhcC--CC----HHHHHH
Q 024712 112 GLWAEAEKAYSSLLED----NPLD---PVLHKRRVAIAKAQGNFPT-------AIEWLNKYLETFM--AD----HDAWRE 171 (263)
Q Consensus 112 ~~~~~A~~~~~~~~~~----~p~~---~~~~~~l~~~~~~~g~~~~-------A~~~~~~~l~~~p--~~----~~~~~~ 171 (263)
..+++|++.|.-++-. .+.. ...+..+|.+|...|+.+. |...|.++++... .. ..+.+.
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 4455555555544431 1111 2455667777777776443 3333333333221 11 344555
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhh
Q 024712 172 LAEIYVSLQMYKQAAFCYEELILS 195 (263)
Q Consensus 172 la~~~~~~g~~~~A~~~~~~al~~ 195 (263)
+|.+....|++++|..+|.+++..
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcC
Confidence 666666666666666666666644
No 322
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.87 E-value=0.49 Score=42.11 Aligned_cols=140 Identities=19% Similarity=0.178 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHH------HH----hCCCc-HHHHHHHHHHHHHcCcHHHHHHHHHHH---------
Q 024712 65 TLYEQVSIAAMDCQCLDVAKDCIKVL------QK----QFPES-KRVGRLEGILLEAKGLWAEAEKAYSSL--------- 124 (263)
Q Consensus 65 ~~~~~la~~~~~~~~~~~A~~~~~~~------~~----~~p~~-~~~~~~~a~~~~~~~~~~~A~~~~~~~--------- 124 (263)
..|...|..+-+..++++|+++|++. ++ .+|.. ...-...|.-+...|+++.|+..|-++
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaiea 741 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEA 741 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHH
Confidence 34555666666677888888877643 22 13422 122233455555566666665544332
Q ss_pred -----------------HhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHH
Q 024712 125 -----------------LEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAF 187 (263)
Q Consensus 125 -----------------~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 187 (263)
...+ .....+-.++..|...|+++.|...|-++= ....-...|-+.|++.+|.+
T Consensus 742 ai~akew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHH
Confidence 1111 111234455666666777777766665541 11222345666777777766
Q ss_pred HHHHHHhhCCCC-HHHHHHHHHHHHhcCC
Q 024712 188 CYEELILSQPTV-PLYHLAYADVLYTLGG 215 (263)
Q Consensus 188 ~~~~al~~~p~~-~~~~~~la~~~~~~g~ 215 (263)
+-.++.. |.. ...+...+.-+-..|+
T Consensus 813 la~e~~~--~e~t~~~yiakaedldehgk 839 (1636)
T KOG3616|consen 813 LAEECHG--PEATISLYIAKAEDLDEHGK 839 (1636)
T ss_pred HHHHhcC--chhHHHHHHHhHHhHHhhcc
Confidence 6655542 332 2234444555555555
No 323
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.81 E-value=0.26 Score=45.56 Aligned_cols=98 Identities=19% Similarity=0.176 Sum_probs=77.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHc----C---cHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024712 71 SIAAMDCQCLDVAKDCIKVLQKQFPESK---RVGRLEGILLEAK----G---LWAEAEKAYSSLLEDNPLDPVLHKRRVA 140 (263)
Q Consensus 71 a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~~a~~~~~~----~---~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 140 (263)
-.+++..+.|+.|+..|+++...+|+.. ++.+..|...... | .+++|+..|++... .|.-|--|...+.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 560 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKAL 560 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHH
Confidence 4456677899999999999999999643 4566666665443 2 57888888888665 4666777888999
Q ss_pred HHHHcCChhHHHHHHHHHHHhcCCCHHHH
Q 024712 141 IAKAQGNFPTAIEWLNKYLETFMADHDAW 169 (263)
Q Consensus 141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 169 (263)
+|..+|++++-++++.-+++..|..|..-
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHPEIS 589 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCCccH
Confidence 99999999999999999999999887643
No 324
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.78 E-value=0.48 Score=34.32 Aligned_cols=124 Identities=15% Similarity=0.125 Sum_probs=93.1
Q ss_pred HHHHHHcCcHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH----HHHHHHHHHHHh
Q 024712 105 GILLEAKGLWAEAEKAYSSLLEDNPLDP--VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH----DAWRELAEIYVS 178 (263)
Q Consensus 105 a~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~ 178 (263)
+.-+.+.+..++|+..|..+-...-... -+....+.+....|+...|+..|..+-...|... .+...-+.++..
T Consensus 65 AL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 65 ALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc
Confidence 4445567888999999988877654444 3567788899999999999999999876654432 234556777888
Q ss_pred cccHHHHHHHHHHHH-hhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhc
Q 024712 179 LQMYKQAAFCYEELI-LSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTID 231 (263)
Q Consensus 179 ~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~ 231 (263)
.|.|++-....+..- ..+|--..+...||..-++.|+ +.+|.+.|..+..
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd---~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGD---FAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccc---hHHHHHHHHHHHc
Confidence 999998776655432 2334445678889999999999 9999999998765
No 325
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.68 Score=38.17 Aligned_cols=161 Identities=18% Similarity=0.092 Sum_probs=113.2
Q ss_pred HHcCChH-HHHHHHHHHHHhCCCcHHHHHHHHHHHH------------HcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 024712 75 MDCQCLD-VAKDCIKVLQKQFPESKRVGRLEGILLE------------AKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI 141 (263)
Q Consensus 75 ~~~~~~~-~A~~~~~~~~~~~p~~~~~~~~~a~~~~------------~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 141 (263)
.+.|.++ ++++.-..++..+|+...+|...-.++. ...-+++-+.+...++..+|+...+|+....+
T Consensus 39 r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~ 118 (421)
T KOG0529|consen 39 REAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWV 118 (421)
T ss_pred HhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 4445554 6777778888888987766654433322 22346777888999999999999999999999
Q ss_pred HHHcCC--hhHHHHHHHHHHHhcCCCHHHHHHHHHHH----HhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhc--
Q 024712 142 AKAQGN--FPTAIEWLNKYLETFMADHDAWRELAEIY----VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTL-- 213 (263)
Q Consensus 142 ~~~~g~--~~~A~~~~~~~l~~~p~~~~~~~~la~~~----~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-- 213 (263)
+.+.+. +..=+...+++++.+|.+..+|...=.+. .......+=+.+..+++..++.|..+|.....++-..
T Consensus 119 L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~ 198 (421)
T KOG0529|consen 119 LQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHP 198 (421)
T ss_pred HHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhcc
Confidence 988764 57788999999999999988875533333 2223356778889999999999999888877666532
Q ss_pred ----CC---CCcHHHHHHHHHHhhccCCC
Q 024712 214 ----GG---VDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 214 ----g~---~~~~~~A~~~~~~al~~~~~ 235 (263)
|+ ..-...-...-..++-.+|+
T Consensus 199 ~~~~g~~~~~~~l~sEle~v~saiFTdp~ 227 (421)
T KOG0529|consen 199 KEADGNFMPKELLQSELEMVHSAIFTDPE 227 (421)
T ss_pred ccccCccCCHHHHHHHHHHHHHHHhcCcc
Confidence 21 01133445555566666776
No 326
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.61 E-value=1.7 Score=39.48 Aligned_cols=166 Identities=15% Similarity=0.001 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC----CCCHH--
Q 024712 65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES-----KRVGRLEGILLEAKGLWAEAEKAYSSLLEDN----PLDPV-- 133 (263)
Q Consensus 65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----p~~~~-- 133 (263)
....-.+.+....|+++.|.+..+.++..-|.+ ..+....|.+..-.|++++|..+.+.+.+.. .....
T Consensus 459 e~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~ 538 (894)
T COG2909 459 EFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALW 538 (894)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 333346777788999999999999999988853 3455677888889999999999999888762 22222
Q ss_pred HHHHHHHHHHHcCCh--hHHHHHHHHHH----HhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHh----hCCCCHH--
Q 024712 134 LHKRRVAIAKAQGNF--PTAIEWLNKYL----ETFMADHDAWRELAEIYVSLQMYKQAAFCYEELIL----SQPTVPL-- 201 (263)
Q Consensus 134 ~~~~l~~~~~~~g~~--~~A~~~~~~~l----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~p~~~~-- 201 (263)
+....+.++..+|.. .+....+...- ...|.+.......+.++...-+++.+..-....++ ..|....
T Consensus 539 ~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~ 618 (894)
T COG2909 539 SLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSR 618 (894)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHH
Confidence 344567788888833 23333332222 22333333333333333333334444444444433 3343322
Q ss_pred -HHHHHHHHHHhcCCCCcHHHHHHHHHHhhccC
Q 024712 202 -YHLAYADVLYTLGGVDNILLAKKYYASTIDLT 233 (263)
Q Consensus 202 -~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~ 233 (263)
....++.+.+..|+ +++|.........+-
T Consensus 619 ~~~~~LA~l~~~~Gd---l~~A~~~l~~~~~l~ 648 (894)
T COG2909 619 LALSMLAELEFLRGD---LDKALAQLDELERLL 648 (894)
T ss_pred HHHHHHHHHHHhcCC---HHHHHHHHHHHHHHh
Confidence 23489999999999 999999998876653
No 327
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=95.55 E-value=0.26 Score=36.55 Aligned_cols=71 Identities=23% Similarity=0.208 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC----CHHHHHHHHHHHHhcccHHHHH
Q 024712 115 AEAEKAYSSLLEDN-PLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA----DHDAWRELAEIYVSLQMYKQAA 186 (263)
Q Consensus 115 ~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~la~~~~~~g~~~~A~ 186 (263)
++|...|-++-... -+++.....+|..|. ..+.++++..+.+++++.+. +++++..|+.++..+|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 56666665554422 245677777777665 56888899999998887543 4788888999999999988874
No 328
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=95.44 E-value=0.073 Score=27.53 Aligned_cols=32 Identities=16% Similarity=0.100 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHH--HHHhhCCC
Q 024712 167 DAWRELAEIYVSLQMYKQAAFCYE--ELILSQPT 198 (263)
Q Consensus 167 ~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~ 198 (263)
+.|+.+|..+..+|++++|+..|+ -+..++|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 345566666666666666666633 55544443
No 329
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.43 E-value=0.052 Score=28.77 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 024712 133 VLHKRRVAIAKAQGNFPTAIEWLNKYLET 161 (263)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 161 (263)
.++.++|.++...|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45677888888888888888888887765
No 330
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.40 E-value=0.14 Score=40.26 Aligned_cols=59 Identities=20% Similarity=0.101 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHh
Q 024712 168 AWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST 229 (263)
Q Consensus 168 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~a 229 (263)
++..++..+...|+++.++..+++.+..+|.+-..|..+-..|+..|+ ...|+..|++.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~---~~~ai~~y~~l 213 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGR---QSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC---chHHHHHHHHH
Confidence 344445555555555555555555555555555555555555555555 44444444443
No 331
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.32 E-value=0.32 Score=45.04 Aligned_cols=126 Identities=14% Similarity=0.049 Sum_probs=91.1
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHc----C---ChhHHHHHHHHHHHhcCCCHHHHHHHH
Q 024712 104 EGILLEAKGLWAEAEKAYSSLLEDNPLDP---VLHKRRVAIAKAQ----G---NFPTAIEWLNKYLETFMADHDAWRELA 173 (263)
Q Consensus 104 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----g---~~~~A~~~~~~~l~~~p~~~~~~~~la 173 (263)
..+++...+.|+.|+..|+++-..-|... .+.+..|.....+ | .+++|+..|++.- -.|.-|--|...|
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 559 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKA 559 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHH
Confidence 34566777899999999999999888764 5667777766543 3 3666777776553 3456666678888
Q ss_pred HHHHhcccHHHHHHHHHHHHhhCCCCHHH-------HHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 174 EIYVSLQMYKQAAFCYEELILSQPTVPLY-------HLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
.+|...|+|++-+++|.-+++..|..|.+ .+++-++.+... ..|..+.--++...|.
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 623 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHR-----REALVFMLLALWIAPE 623 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhCcc
Confidence 99999999999999999999999988753 333444443333 3566677677776665
No 332
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.27 E-value=0.21 Score=38.83 Aligned_cols=64 Identities=16% Similarity=0.078 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 169 WRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 169 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
..++=..+...++++.|..+.++.+.++|.++.-+.-.|-+|...|. +.-|++.++..++..|+
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c---~~vAl~dl~~~~~~~P~ 247 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGC---YHVALEDLSYFVEHCPD 247 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCC---chhhHHHHHHHHHhCCC
Confidence 34455667788899999999999999999999888999999999999 99999999998888887
No 333
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=95.12 E-value=1.9 Score=37.04 Aligned_cols=152 Identities=11% Similarity=-0.035 Sum_probs=108.5
Q ss_pred hHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHcCChhHHHHHHHH
Q 024712 80 LDVAKDCIKVLQKQFPESK-RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAI-AKAQGNFPTAIEWLNK 157 (263)
Q Consensus 80 ~~~A~~~~~~~~~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~ 157 (263)
++....++++++.....++ -++..+-..-.+..-.+.|..+|.++-+..-....++..-|.+ |...++..-|...|+-
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeL 426 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFEL 426 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHH
Confidence 5566677777777654333 3455555666666777888899999887543333333333322 3457899999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh--CCCC-HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCC
Q 024712 158 YLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS--QPTV-PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 234 (263)
Q Consensus 158 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~-~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~ 234 (263)
.+..+++++..-......+...|+-..|..+|++++.. .|+. ..+|..+-..-..-|+ ...+++.=++-....|
T Consensus 427 GLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd---L~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 427 GLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD---LNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc---HHHHHHHHHHHHHhcc
Confidence 99999999998888888999999999999999999987 4333 4577777777778888 7766665555443333
No 334
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.07 E-value=0.2 Score=39.41 Aligned_cols=64 Identities=22% Similarity=0.161 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 024712 132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS 195 (263)
Q Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 195 (263)
..++..++..+...|+++.++..+++.+..+|.+-..|..+-..|...|+...|+..|.+.-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3567778888889999999999999999999999999999999999999999999999887654
No 335
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=94.98 E-value=0.19 Score=41.49 Aligned_cols=85 Identities=14% Similarity=0.099 Sum_probs=43.9
Q ss_pred HHHHHHcCcHHHHHHHHHHHHhcC--------CCCH----------HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH
Q 024712 105 GILLEAKGLWAEAEKAYSSLLEDN--------PLDP----------VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH 166 (263)
Q Consensus 105 a~~~~~~~~~~~A~~~~~~~~~~~--------p~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 166 (263)
|..+++.++|..|..-|+.++++- |..+ .+-..+..||...++.+-|+....+.+.++|..+
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 344555566666666666666531 1110 1223445555555555555555555555555555
Q ss_pred HHHHHHHHHHHhcccHHHHHHHH
Q 024712 167 DAWRELAEIYVSLQMYKQAAFCY 189 (263)
Q Consensus 167 ~~~~~la~~~~~~g~~~~A~~~~ 189 (263)
.-+...|.++..+.+|.+|...+
T Consensus 263 rnHLrqAavfR~LeRy~eAarSa 285 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSA 285 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555554444
No 336
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.96 E-value=1.9 Score=36.31 Aligned_cols=161 Identities=13% Similarity=0.045 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc------------------
Q 024712 66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED------------------ 127 (263)
Q Consensus 66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------------------ 127 (263)
+|..-.......++-+.|+....+++...| .....++.+|....+-+..-.+|++++..
T Consensus 304 vw~dys~Y~~~isd~q~al~tv~rg~~~sp---sL~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~ 380 (660)
T COG5107 304 VWFDYSEYLIGISDKQKALKTVERGIEMSP---SLTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDN 380 (660)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhcccCCC---chheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccC
Confidence 333334444556677777776666654444 35566677776666655555555554331
Q ss_pred CCCC-HH-----------HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHH-HHhcccHHHHHHHHHHHHh
Q 024712 128 NPLD-PV-----------LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI-YVSLQMYKQAAFCYEELIL 194 (263)
Q Consensus 128 ~p~~-~~-----------~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~ 194 (263)
+|.. +. ++..+...-.+..-.+.|...|-++-+..-....++..-|.+ +...|++.-|...|+-.+.
T Consensus 381 N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~ 460 (660)
T COG5107 381 NFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLL 460 (660)
T ss_pred CccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHH
Confidence 1100 11 111112222222334455555555544332333444443433 4457888888888988888
Q ss_pred hCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712 195 SQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (263)
Q Consensus 195 ~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~ 232 (263)
..|+++......-..+...++ -..|...|+.++..
T Consensus 461 ~f~d~~~y~~kyl~fLi~ind---e~naraLFetsv~r 495 (660)
T COG5107 461 KFPDSTLYKEKYLLFLIRIND---EENARALFETSVER 495 (660)
T ss_pred hCCCchHHHHHHHHHHHHhCc---HHHHHHHHHHhHHH
Confidence 888888777777777778888 78888888877654
No 337
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.85 E-value=0.43 Score=29.49 Aligned_cols=51 Identities=18% Similarity=0.156 Sum_probs=25.8
Q ss_pred HHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHH---HHHHhcccHHHHHHHHHH
Q 024712 141 IAKAQGNFPTAIEWLNKYLETFMADHDAWRELA---EIYVSLQMYKQAAFCYEE 191 (263)
Q Consensus 141 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la---~~~~~~g~~~~A~~~~~~ 191 (263)
-++..++..+|+..+.++++..++.++-+..+| .++...|+|.+++.+-.+
T Consensus 15 kLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 15 KLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666655555544443333 334455555555554433
No 338
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.79 E-value=2.8 Score=37.40 Aligned_cols=145 Identities=15% Similarity=0.019 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHhCC----CcHHHHHHHHHHHH-HcCcHHHHHHHHHHHHhcCCC--CHH----HHHHHHHHHHHcCChh
Q 024712 81 DVAKDCIKVLQKQFP----ESKRVGRLEGILLE-AKGLWAEAEKAYSSLLEDNPL--DPV----LHKRRVAIAKAQGNFP 149 (263)
Q Consensus 81 ~~A~~~~~~~~~~~p----~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~--~~~----~~~~l~~~~~~~g~~~ 149 (263)
..|+++++.+++..+ ....+.+.+|.+++ ...+++.|..++.+++.+... ..+ +...++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 457888888886443 24567778888887 678999999999999876533 222 3445678887777666
Q ss_pred HHHHHHHHHHHhcCC---CHHHH-HHH--HHHHHhcccHHHHHHHHHHHHhhC--CCCHHHH----HHHHHHHHhcCCCC
Q 024712 150 TAIEWLNKYLETFMA---DHDAW-REL--AEIYVSLQMYKQAAFCYEELILSQ--PTVPLYH----LAYADVLYTLGGVD 217 (263)
Q Consensus 150 ~A~~~~~~~l~~~p~---~~~~~-~~l--a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~----~~la~~~~~~g~~~ 217 (263)
|...+++.++.... ....| +.+ .......+++..|+..++...... +.++.+. ...+.+....+.
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~-- 194 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS-- 194 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC--
Confidence 99999999886544 22222 222 223333479999999999988765 3554432 223455556666
Q ss_pred cHHHHHHHHHHh
Q 024712 218 NILLAKKYYAST 229 (263)
Q Consensus 218 ~~~~A~~~~~~a 229 (263)
.+.+++...++
T Consensus 195 -~~d~~~~l~~~ 205 (608)
T PF10345_consen 195 -PDDVLELLQRA 205 (608)
T ss_pred -chhHHHHHHHH
Confidence 55666666655
No 339
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=94.79 E-value=1.3 Score=39.54 Aligned_cols=141 Identities=16% Similarity=0.094 Sum_probs=82.3
Q ss_pred cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 024712 77 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156 (263)
Q Consensus 77 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (263)
..++.+|+.+++.+...+. ....+-..+.-|...|+|+-|.++|.++- ....-..+|.+.|+|..|....+
T Consensus 745 akew~kai~ildniqdqk~-~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQKT-ASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred hhhhhhhHhHHHHhhhhcc-ccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHH
Confidence 3444455554444433322 12234456777888899999988877642 22344567778889988887777
Q ss_pred HHHHhcCCC-HHHHHHHHHHHHhcccH-------------HHHHHHHHHH------H----hhCCCC-HHHHHHHHHHHH
Q 024712 157 KYLETFMAD-HDAWRELAEIYVSLQMY-------------KQAAFCYEEL------I----LSQPTV-PLYHLAYADVLY 211 (263)
Q Consensus 157 ~~l~~~p~~-~~~~~~la~~~~~~g~~-------------~~A~~~~~~a------l----~~~p~~-~~~~~~la~~~~ 211 (263)
++.. |.. ...+...+.-+-..|+| +.|+..|.+. + +..|+. ...+..+|.-+.
T Consensus 816 e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e 893 (1636)
T KOG3616|consen 816 ECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELE 893 (1636)
T ss_pred HhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHH
Confidence 6542 322 22333334444444444 4444444432 1 122332 457788898899
Q ss_pred hcCCCCcHHHHHHHHHHhhc
Q 024712 212 TLGGVDNILLAKKYYASTID 231 (263)
Q Consensus 212 ~~g~~~~~~~A~~~~~~al~ 231 (263)
..|+ .+.|..+|.++-.
T Consensus 894 ~~g~---lkaae~~flea~d 910 (1636)
T KOG3616|consen 894 AEGD---LKAAEEHFLEAGD 910 (1636)
T ss_pred hccC---hhHHHHHHHhhhh
Confidence 9999 8888888877643
No 340
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.79 E-value=3.2 Score=41.98 Aligned_cols=138 Identities=14% Similarity=0.087 Sum_probs=100.5
Q ss_pred ccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC------
Q 024712 58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD------ 131 (263)
Q Consensus 58 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------ 131 (263)
..+.....+|.+.|.+....|.++.|...+-.+.+.. -+.+....|..+...|+-..|+.++++.++.+-.+
T Consensus 1664 ~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~ 1741 (2382)
T KOG0890|consen 1664 NLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYT 1741 (2382)
T ss_pred cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCcc
Confidence 4566788999999999999999999999988887755 56788999999999999999999999999754221
Q ss_pred --H---------HHHHHHHHHHHHcCCh--hHHHHHHHHHHHhcCCCHHHHHHHHHHHH------------hcccHHH--
Q 024712 132 --P---------VLHKRRVAIAKAQGNF--PTAIEWLNKYLETFMADHDAWRELAEIYV------------SLQMYKQ-- 184 (263)
Q Consensus 132 --~---------~~~~~l~~~~~~~g~~--~~A~~~~~~~l~~~p~~~~~~~~la~~~~------------~~g~~~~-- 184 (263)
+ .+...++......|++ ..-+..|..+.+..|...+-++.+|..|. ..|++..
T Consensus 1742 ~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l 1821 (2382)
T KOG0890|consen 1742 DTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLL 1821 (2382)
T ss_pred ccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHH
Confidence 1 1233334444445553 45678889999999977777777775542 3355555
Q ss_pred -HHHHHHHHHhhCC
Q 024712 185 -AAFCYEELILSQP 197 (263)
Q Consensus 185 -A~~~~~~al~~~p 197 (263)
++..|.+++..+.
T Consensus 1822 ~~~~~~~~sl~yg~ 1835 (2382)
T KOG0890|consen 1822 KAIYFFGRALYYGN 1835 (2382)
T ss_pred HHHHHHHHHHHhcc
Confidence 5556667765543
No 341
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.64 E-value=1.5 Score=37.24 Aligned_cols=131 Identities=15% Similarity=-0.024 Sum_probs=81.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 024712 67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG 146 (263)
Q Consensus 67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 146 (263)
...++..+.+.|-.+.|+.+. .++...+ .+..+.|+.+.|.+..+ ..+++..|..+|.....+|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~--------~D~~~rF---eLAl~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFV--------TDPDHRF---ELALQLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHS--------S-HHHHH---HHHHHCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHhhc--------CChHHHh---HHHHhcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcC
Confidence 444566666778888777664 2444433 45577899998876432 3447789999999999999
Q ss_pred ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHH
Q 024712 147 NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYY 226 (263)
Q Consensus 147 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~ 226 (263)
+++-|..+|+++-. +..|..+|...|+-+.-.+....+......+ ..-.+++.+|+ .++.++.+
T Consensus 362 ~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n-----~af~~~~~lgd---~~~cv~lL 425 (443)
T PF04053_consen 362 NIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERGDIN-----IAFQAALLLGD---VEECVDLL 425 (443)
T ss_dssp BHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HH-----HHHHHHHHHT----HHHHHHHH
T ss_pred CHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHccCHH-----HHHHHHHHcCC---HHHHHHHH
Confidence 99999999988632 3456667777777666555555554433221 11134555677 66666666
Q ss_pred HHh
Q 024712 227 AST 229 (263)
Q Consensus 227 ~~a 229 (263)
.++
T Consensus 426 ~~~ 428 (443)
T PF04053_consen 426 IET 428 (443)
T ss_dssp HHT
T ss_pred HHc
Confidence 554
No 342
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.52 E-value=0.3 Score=31.58 Aligned_cols=27 Identities=11% Similarity=0.213 Sum_probs=14.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHh
Q 024712 135 HKRRVAIAKAQGNFPTAIEWLNKYLET 161 (263)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~ 161 (263)
...++.++...|++++|+..+++++++
T Consensus 44 ll~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 44 LLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344555555555555555555555543
No 343
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=94.46 E-value=1.4 Score=32.34 Aligned_cols=149 Identities=12% Similarity=0.051 Sum_probs=94.7
Q ss_pred cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-----cCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-----C
Q 024712 77 CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA-----KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ-----G 146 (263)
Q Consensus 77 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~-----~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-----g 146 (263)
..+|++|.++|+.-.+.+.. +...+-+|..++. .++...|+..+..+-. -+.+.+-..+|.++... +
T Consensus 48 ~knF~~A~kv~K~nCden~y-~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~ 124 (248)
T KOG4014|consen 48 QKNFQAAVKVFKKNCDENSY-PKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKA 124 (248)
T ss_pred HHHHHHHHHHHHhcccccCC-cHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccC
Confidence 46788888888776665443 2333444444432 3577888888888776 44566666777666532 2
Q ss_pred --ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh------------------------cccHHHHHHHHHHHHhhCCCCH
Q 024712 147 --NFPTAIEWLNKYLETFMADHDAWRELAEIYVS------------------------LQMYKQAAFCYEELILSQPTVP 200 (263)
Q Consensus 147 --~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~------------------------~g~~~~A~~~~~~al~~~p~~~ 200 (263)
+..+|..++.++..+. +..+.+.|...+.. ..+.+.|.++--++-+++ ++
T Consensus 125 dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~--~~ 200 (248)
T KOG4014|consen 125 DPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELD--IP 200 (248)
T ss_pred CCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcC--Ch
Confidence 3667888888887653 44455555544443 356777877777776654 56
Q ss_pred HHHHHHHHHHHhcCC--CCcHHHHHHHHHHhhccC
Q 024712 201 LYHLAYADVLYTLGG--VDNILLAKKYYASTIDLT 233 (263)
Q Consensus 201 ~~~~~la~~~~~~g~--~~~~~~A~~~~~~al~~~ 233 (263)
.+..++.+.| .+|+ ..+.++|..+-.++.++.
T Consensus 201 ~aCAN~SrMy-klGDGv~Kde~~Aekyk~rA~e~~ 234 (248)
T KOG4014|consen 201 QACANVSRMY-KLGDGVPKDEDQAEKYKDRAKEIM 234 (248)
T ss_pred HHHhhHHHHH-HccCCCCccHHHHHHHHHHHHHHH
Confidence 7777777766 4444 344778888877777663
No 344
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.45 E-value=0.38 Score=31.12 Aligned_cols=56 Identities=16% Similarity=-0.003 Sum_probs=45.3
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCC----c-----HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC
Q 024712 73 AAMDCQCLDVAKDCIKVLQKQFPE----S-----KRVGRLEGILLEAKGLWAEAEKAYSSLLEDN 128 (263)
Q Consensus 73 ~~~~~~~~~~A~~~~~~~~~~~p~----~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 128 (263)
..++.|++..|++.+.+..+.... . ..+...+|.++...|++++|+..+++++.+.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 346789999999988888875431 1 3456778999999999999999999999864
No 345
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.31 E-value=1.6 Score=36.13 Aligned_cols=129 Identities=13% Similarity=0.048 Sum_probs=89.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCC-C--------cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-----CCC-CHHHH
Q 024712 71 SIAAMDCQCLDVAKDCIKVLQKQFP-E--------SKRVGRLEGILLEAKGLWAEAEKAYSSLLED-----NPL-DPVLH 135 (263)
Q Consensus 71 a~~~~~~~~~~~A~~~~~~~~~~~p-~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~-~~~~~ 135 (263)
......++++.+|..+-+..+.... . .+..++.+..++...|+...-...+...+.. +.. .....
T Consensus 133 ~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLi 212 (493)
T KOG2581|consen 133 LLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLI 212 (493)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHH
Confidence 3445567899999888777665321 1 2345667777888888866655555555442 111 12345
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHH--hcCCC--HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC
Q 024712 136 KRRVAIAKAQGNFPTAIEWLNKYLE--TFMAD--HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV 199 (263)
Q Consensus 136 ~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 199 (263)
+.+-..|...+.++.|.....+..- ...++ +...+.+|.+...+++|..|.+++-+|+...|.+
T Consensus 213 N~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 213 NLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 5667788888899999887777651 12222 3456789999999999999999999999999975
No 346
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.25 E-value=3.3 Score=35.91 Aligned_cols=137 Identities=19% Similarity=0.081 Sum_probs=93.0
Q ss_pred CcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CC----------------CcHHHHHH---HHHHHHHcCcHH
Q 024712 60 GPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ-----FP----------------ESKRVGRL---EGILLEAKGLWA 115 (263)
Q Consensus 60 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~p----------------~~~~~~~~---~a~~~~~~~~~~ 115 (263)
.|-....+.+++.++..+|+.+-|..++++++=. +| .+-..+.. .-..+.+.|=+.
T Consensus 280 sPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~r 359 (665)
T KOG2422|consen 280 SPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWR 359 (665)
T ss_pred CCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChH
Confidence 5777888999999999999999888887776531 22 11122221 222344568899
Q ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHH-HcCChhHHHHHHHHH-----HHhcCCCHHHHHHHHHHHHhccc---HHHH
Q 024712 116 EAEKAYSSLLEDNPL-DPVLHKRRVAIAK-AQGNFPTAIEWLNKY-----LETFMADHDAWRELAEIYVSLQM---YKQA 185 (263)
Q Consensus 116 ~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~-----l~~~p~~~~~~~~la~~~~~~g~---~~~A 185 (263)
.|.++.+-+++++|. +|.+...+..+|. +..+|.=-+..++.+ +...|+-+. -..+|..|..... -+.|
T Consensus 360 TA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~y-S~AlA~f~l~~~~~~~rqsa 438 (665)
T KOG2422|consen 360 TALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGY-SLALARFFLRKNEEDDRQSA 438 (665)
T ss_pred HHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchH-HHHHHHHHHhcCChhhHHHH
Confidence 999999999999998 8766655555553 455666666666655 334455432 2456666666554 5678
Q ss_pred HHHHHHHHhhCC
Q 024712 186 AFCYEELILSQP 197 (263)
Q Consensus 186 ~~~~~~al~~~p 197 (263)
...+.+|+...|
T Consensus 439 ~~~l~qAl~~~P 450 (665)
T KOG2422|consen 439 LNALLQALKHHP 450 (665)
T ss_pred HHHHHHHHHhCc
Confidence 889999998877
No 347
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=94.21 E-value=2.6 Score=35.16 Aligned_cols=88 Identities=10% Similarity=-0.105 Sum_probs=67.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCC--------C-----c-----HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH
Q 024712 71 SIAAMDCQCLDVAKDCIKVLQKQFP--------E-----S-----KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP 132 (263)
Q Consensus 71 a~~~~~~~~~~~A~~~~~~~~~~~p--------~-----~-----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~ 132 (263)
|..++++++|..|..-|..+++... . + ..+...+..||.++++.+-|+....+.+..+|...
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 4556777777777777777776432 1 1 12334678899999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHH
Q 024712 133 VLHKRRVAIAKAQGNFPTAIEWLNKY 158 (263)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 158 (263)
..+...+.+...+.+|.+|...+--+
T Consensus 263 rnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888887655443
No 348
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=94.14 E-value=0.29 Score=38.65 Aligned_cols=62 Identities=18% Similarity=0.181 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 024712 117 AEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS 178 (263)
Q Consensus 117 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 178 (263)
|..+|.+|..+.|++...++.+|.+....|+.-.|+-+|-+++-...-.+.+..+|...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 56788888888888888888888888888888888888888876544446677777777665
No 349
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=94.13 E-value=0.27 Score=38.62 Aligned_cols=59 Identities=19% Similarity=0.130 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 024712 169 WRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTI 230 (263)
Q Consensus 169 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al 230 (263)
+...+..|...|.+.+|+.+.+++++++|-+...+..+..++...|+ --.+.++|++.-
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD---~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD---EISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc---chhhhhHHHHHH
Confidence 34456778889999999999999999999999999999999999999 888888887753
No 350
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.04 E-value=1.2 Score=30.08 Aligned_cols=90 Identities=14% Similarity=0.027 Sum_probs=65.5
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCC------------HHHHHHHHHHHHhcccHHHHHHHHHHHHh-------hCCCCH
Q 024712 140 AIAKAQGNFPTAIEWLNKYLETFMAD------------HDAWRELAEIYVSLQMYKQAAFCYEELIL-------SQPTVP 200 (263)
Q Consensus 140 ~~~~~~g~~~~A~~~~~~~l~~~p~~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~ 200 (263)
.-....|.+++|...+.++++....- .-.+-.|+..+..+|+|++++....+++. ++.+..
T Consensus 17 e~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeG 96 (144)
T PF12968_consen 17 ERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEG 96 (144)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccc
Confidence 33445688999999999999764222 33556788899999999999888888874 344443
Q ss_pred H----HHHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712 201 L----YHLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (263)
Q Consensus 201 ~----~~~~la~~~~~~g~~~~~~~A~~~~~~al~~ 232 (263)
. +.+..|..+..+|+ .++|...|+.+-+.
T Consensus 97 klWIaaVfsra~Al~~~Gr---~~eA~~~fr~agEM 129 (144)
T PF12968_consen 97 KLWIAAVFSRAVALEGLGR---KEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHH
Confidence 3 44567889999999 99999999998654
No 351
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.92 E-value=0.12 Score=27.06 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHh
Q 024712 169 WRELAEIYVSLQMYKQAAFCYEELIL 194 (263)
Q Consensus 169 ~~~la~~~~~~g~~~~A~~~~~~al~ 194 (263)
+..||.+-...++|++|+.-|+++++
T Consensus 4 ~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 4 YDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 352
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=93.90 E-value=1.8 Score=36.02 Aligned_cols=60 Identities=15% Similarity=0.020 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH--HH--HHHHHHHHHcCcHHHHHHHHHHHHhc
Q 024712 68 EQVSIAAMDCQCLDVAKDCIKVLQKQFPESKR--VG--RLEGILLEAKGLWAEAEKAYSSLLED 127 (263)
Q Consensus 68 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~--~~--~~~a~~~~~~~~~~~A~~~~~~~~~~ 127 (263)
...+..++..++|..|..++..+...-|.+.. .+ ...|..+...-++++|.+.++..+..
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 35677888999999999999999987444333 22 23455566778999999999998875
No 353
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=93.89 E-value=1.2 Score=39.88 Aligned_cols=133 Identities=17% Similarity=0.157 Sum_probs=80.5
Q ss_pred cCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHc---------CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 024712 77 CQCLDVAKDCIKVLQKQF-PESKRVGRLEGILLEAK---------GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQG 146 (263)
Q Consensus 77 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 146 (263)
.|+-++|+...-.+++.. |-.++.+.+-|++|..+ +..+.|+++|+++++..|..... .+++.++...|
T Consensus 256 ~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sG-IN~atLL~aaG 334 (1226)
T KOG4279|consen 256 PGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSG-INLATLLRAAG 334 (1226)
T ss_pred CccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhcc-ccHHHHHHHhh
Confidence 488899999888888865 45677777778777543 56788999999999999875433 45666666666
Q ss_pred C-hhHHHHHHHHHHHhcC-----C---CHHHHHHHHHHH---HhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 024712 147 N-FPTAIEWLNKYLETFM-----A---DHDAWRELAEIY---VSLQMYKQAAFCYEELILSQPTVPLYHLAYADVL 210 (263)
Q Consensus 147 ~-~~~A~~~~~~~l~~~p-----~---~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 210 (263)
. ++...+.-.-.+.++. . ....|...|..+ ...++|.+|+...+..+++.|-.+.....+..+.
T Consensus 335 ~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~meni~ 410 (1226)
T KOG4279|consen 335 EHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKSTMENIL 410 (1226)
T ss_pred hhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehHHHHHHHHH
Confidence 4 3333222222222210 0 011122222222 2346788888888888888776555444444433
No 354
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.89 E-value=0.46 Score=37.37 Aligned_cols=54 Identities=17% Similarity=0.022 Sum_probs=29.2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHH
Q 024712 138 RVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEE 191 (263)
Q Consensus 138 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 191 (263)
.+..|...|.+.+|++..++++..+|-+...+..+-.++...|+--.+++.|++
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 344455555555555555555555555555555555555555554444444443
No 355
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.71 E-value=1.5 Score=32.66 Aligned_cols=72 Identities=13% Similarity=-0.023 Sum_probs=55.1
Q ss_pred hhHHHHHHHHHHHh-cCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHhcCCCCcHHHH
Q 024712 148 FPTAIEWLNKYLET-FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPT----VPLYHLAYADVLYTLGGVDNILLA 222 (263)
Q Consensus 148 ~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~~~~A 222 (263)
-++|...|-++-.. .-++++..+.||..|. ..+.++|+.++.+++++.+. ++.++..|+.+++..|+ ++.|
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~---~e~A 197 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN---YEQA 197 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc---hhhh
Confidence 35566655544321 2356888889998876 56789999999999988643 48899999999999999 9887
Q ss_pred H
Q 024712 223 K 223 (263)
Q Consensus 223 ~ 223 (263)
-
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 4
No 356
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.67 E-value=0.13 Score=24.27 Aligned_cols=19 Identities=32% Similarity=0.076 Sum_probs=8.1
Q ss_pred HHHHHHHHHcCcHHHHHHH
Q 024712 102 RLEGILLEAKGLWAEAEKA 120 (263)
Q Consensus 102 ~~~a~~~~~~~~~~~A~~~ 120 (263)
..+|.++...|++++|...
T Consensus 5 ~~la~~~~~~G~~~eA~~~ 23 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERL 23 (26)
T ss_pred HHHHHHHHHcCCHHHHHHH
Confidence 3344444444444444433
No 357
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.50 E-value=5.4 Score=35.70 Aligned_cols=152 Identities=15% Similarity=0.091 Sum_probs=100.1
Q ss_pred HHHHHHHHHhcCcccccccCc-chHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCC--CcH----HHHHHHHHHHHHcC
Q 024712 41 KVLRHGLSILNDPKKRSALGP-DVWTLYEQVSIAAM-DCQCLDVAKDCIKVLQKQFP--ESK----RVGRLEGILLEAKG 112 (263)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~p--~~~----~~~~~~a~~~~~~~ 112 (263)
..+..+..-+.-......++| ....+..++|.+++ ...+++.|..++++++.... +.. .+...++.++.+.+
T Consensus 35 kLI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~ 114 (608)
T PF10345_consen 35 KLIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTN 114 (608)
T ss_pred HHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcC
Confidence 334444443322222345555 47778889999988 67999999999999987763 222 23456788888888
Q ss_pred cHHHHHHHHHHHHhcCCC---C-HHHHHHHH--HHHHHcCChhHHHHHHHHHHHhc--CCCHHHH----HHHHHHHHhcc
Q 024712 113 LWAEAEKAYSSLLEDNPL---D-PVLHKRRV--AIAKAQGNFPTAIEWLNKYLETF--MADHDAW----RELAEIYVSLQ 180 (263)
Q Consensus 113 ~~~~A~~~~~~~~~~~p~---~-~~~~~~l~--~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~----~~la~~~~~~g 180 (263)
... |...+++.++.... . ....+.+. ......+++..|+..++...... +.++.+. ...+.+....+
T Consensus 115 ~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~ 193 (608)
T PF10345_consen 115 PKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRG 193 (608)
T ss_pred HHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCC
Confidence 776 99999999886443 1 22222222 22333379999999999988765 4554432 23456666778
Q ss_pred cHHHHHHHHHHHH
Q 024712 181 MYKQAAFCYEELI 193 (263)
Q Consensus 181 ~~~~A~~~~~~al 193 (263)
..+++++..+++.
T Consensus 194 ~~~d~~~~l~~~~ 206 (608)
T PF10345_consen 194 SPDDVLELLQRAI 206 (608)
T ss_pred CchhHHHHHHHHH
Confidence 7888888888774
No 358
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.49 E-value=6 Score=36.23 Aligned_cols=201 Identities=17% Similarity=0.017 Sum_probs=122.2
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------Cc
Q 024712 24 AWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP------ES 97 (263)
Q Consensus 24 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~ 97 (263)
.+..++..-.....+++....++...+.. -.....-....++..++.+..-.|++++|..+...+.+..- -.
T Consensus 459 e~~aL~a~val~~~~~e~a~~lar~al~~--L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~ 536 (894)
T COG2909 459 EFQALRAQVALNRGDPEEAEDLARLALVQ--LPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLA 536 (894)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh--cccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHH
Confidence 46667777777888888888888887765 11111223344555678888889999999999988877532 12
Q ss_pred HHHHHHHHHHHHHcCc--HHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh----cCCCHH
Q 024712 98 KRVGRLEGILLEAKGL--WAEAEKAYSSLLE----DNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET----FMADHD 167 (263)
Q Consensus 98 ~~~~~~~a~~~~~~~~--~~~A~~~~~~~~~----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~----~p~~~~ 167 (263)
..+....+.++...|+ +.+....+...-. ..|.+.......+.++..--+.+.+.....+.++. .|....
T Consensus 537 ~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~ 616 (894)
T COG2909 537 LWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLL 616 (894)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhH
Confidence 3344556778888883 3444444443332 23444444444444444433466666666665554 233322
Q ss_pred H---HHHHHHHHHhcccHHHHHHHHHHHHhhCCCC-----HHHHHHHH--HHHHhcCCCCcHHHHHHHHHHh
Q 024712 168 A---WRELAEIYVSLQMYKQAAFCYEELILSQPTV-----PLYHLAYA--DVLYTLGGVDNILLAKKYYAST 229 (263)
Q Consensus 168 ~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la--~~~~~~g~~~~~~~A~~~~~~a 229 (263)
. .+.++.+++..|++++|...+.+...+-.+. ..+..... ......|+ ...|.....+.
T Consensus 617 ~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~---~~~a~~~l~~s 685 (894)
T COG2909 617 SRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGD---KELAAEWLLKS 685 (894)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCC---HHHHHHHHHhc
Confidence 2 2478999999999999999988876543222 12222222 23334577 88887777764
No 359
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.41 E-value=6.9 Score=36.70 Aligned_cols=154 Identities=14% Similarity=0.001 Sum_probs=94.8
Q ss_pred chHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CC-cHHHHH------------------------HHHHHHHHcCcH
Q 024712 62 DVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF--PE-SKRVGR------------------------LEGILLEAKGLW 114 (263)
Q Consensus 62 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~-~~~~~~------------------------~~a~~~~~~~~~ 114 (263)
+++..|........+.|.|++-++++..+-+.- |. +....+ ..|+-++..|.|
T Consensus 1131 dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y 1210 (1666)
T KOG0985|consen 1131 DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMY 1210 (1666)
T ss_pred CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhh
Confidence 556677778888888899998888887665543 21 111111 123333444445
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhc---------------------C----CCHHHH
Q 024712 115 AEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETF---------------------M----ADHDAW 169 (263)
Q Consensus 115 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~---------------------p----~~~~~~ 169 (263)
+.|.-+|.. ..-|..++..+...|+|..|....+++-... . -.++-+
T Consensus 1211 ~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeL 1282 (1666)
T KOG0985|consen 1211 EAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADEL 1282 (1666)
T ss_pred HHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhH
Confidence 444443332 2335567777777788877777776653210 0 012234
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 024712 170 RELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYA 227 (263)
Q Consensus 170 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~ 227 (263)
-.+...|...|-|++-+..++.++-+...+...+..+|.+|.+-. +++-.++++
T Consensus 1283 eeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk----p~km~EHl~ 1336 (1666)
T KOG0985|consen 1283 EELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK----PEKMMEHLK 1336 (1666)
T ss_pred HHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC----HHHHHHHHH
Confidence 456777888888999999998888888777777888887776654 344444443
No 360
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=93.36 E-value=1 Score=42.53 Aligned_cols=138 Identities=14% Similarity=0.038 Sum_probs=104.7
Q ss_pred cccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-
Q 024712 57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF--------PESKRVGRLEGILLEAKGLWAEAEKAYSSLLED- 127 (263)
Q Consensus 57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~- 127 (263)
..+.|+....|..++..+...++.++|+..-.++.-.. |+....+..++...+..++...|+..+.++..+
T Consensus 966 ~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~ 1045 (1236)
T KOG1839|consen 966 GVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLK 1045 (1236)
T ss_pred hhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhh
Confidence 44577888899999999999999999998877665432 345566778888888888888899988888764
Q ss_pred -------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC-----C---CHHHHHHHHHHHHhcccHHHHHHHHHHH
Q 024712 128 -------NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM-----A---DHDAWRELAEIYVSLQMYKQAAFCYEEL 192 (263)
Q Consensus 128 -------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p-----~---~~~~~~~la~~~~~~g~~~~A~~~~~~a 192 (263)
+|.-.....++..++...++++.|+.+.+.|+...- . ....+..++..+...+++..|....+..
T Consensus 1046 ~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t 1125 (1236)
T KOG1839|consen 1046 LLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVT 1125 (1236)
T ss_pred ccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhH
Confidence 344445667888888888999999999999998532 2 2345566777777778887777766655
Q ss_pred Hh
Q 024712 193 IL 194 (263)
Q Consensus 193 l~ 194 (263)
..
T Consensus 1126 ~~ 1127 (1236)
T KOG1839|consen 1126 YG 1127 (1236)
T ss_pred HH
Confidence 53
No 361
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=93.32 E-value=0.44 Score=37.62 Aligned_cols=62 Identities=13% Similarity=0.016 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 024712 83 AKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA 144 (263)
Q Consensus 83 A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 144 (263)
|..+|.++....|++...+..+|.++...|+.=.|+=+|-+++-...-.+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999998888887654457788888888776
No 362
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=93.28 E-value=0.33 Score=23.81 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHhcCCCHHHHHHH
Q 024712 148 FPTAIEWLNKYLETFMADHDAWREL 172 (263)
Q Consensus 148 ~~~A~~~~~~~l~~~p~~~~~~~~l 172 (263)
.+.+...|++++...|.++.+|...
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~y 27 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLKY 27 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHH
Confidence 3444444444444444444444433
No 363
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=93.22 E-value=3.1 Score=32.15 Aligned_cols=162 Identities=18% Similarity=0.152 Sum_probs=84.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHH-cCcHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHH
Q 024712 67 YEQVSIAAMDCQCLDVAKDCIKVLQKQFPE-SKRVGRLEGILLEA-KGLWAEAEKAYSSLLEDNPLDP-VLHKRRVAIAK 143 (263)
Q Consensus 67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~ 143 (263)
+..+|..+-..|++++.+.++++++..+|. +..-...++.+|-. .|....+...+........... .....+..-+.
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk 83 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYK 83 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHH
Confidence 345788888999999999999999999874 34444555555533 3555556655555544332221 11111111111
Q ss_pred Hc------CChhHHHHHHHHHHHhcCCCHH----HHHHHHHHHHh-----cc-----cHHHHHHHHHHHHh-----hCCC
Q 024712 144 AQ------GNFPTAIEWLNKYLETFMADHD----AWRELAEIYVS-----LQ-----MYKQAAFCYEELIL-----SQPT 198 (263)
Q Consensus 144 ~~------g~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~-----~g-----~~~~A~~~~~~al~-----~~p~ 198 (263)
.. .--.+.+......+--...++. .+-..|..|.. .| -.+.|...|++|+. +.|.
T Consensus 84 ~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~ 163 (236)
T PF00244_consen 84 KKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPT 163 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCC
Confidence 10 0011222222222211222222 12234444422 12 23678888888774 4677
Q ss_pred CHH---HHHHHHHHHHh-cCCCCcHHHHHHHHHHhhc
Q 024712 199 VPL---YHLAYADVLYT-LGGVDNILLAKKYYASTID 231 (263)
Q Consensus 199 ~~~---~~~~la~~~~~-~g~~~~~~~A~~~~~~al~ 231 (263)
+|. ...+.+..++. .|+ .++|+...++++.
T Consensus 164 ~p~rLgl~LN~svF~yei~~~---~~~A~~ia~~afd 197 (236)
T PF00244_consen 164 HPLRLGLALNYSVFYYEILND---PEKAIEIAKQAFD 197 (236)
T ss_dssp SHHHHHHHHHHHHHHHHTSS----HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCC---hHHHHHHHHHHHH
Confidence 765 34556655544 688 8888877777664
No 364
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.15 E-value=0.2 Score=23.65 Aligned_cols=21 Identities=29% Similarity=0.252 Sum_probs=10.6
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHH
Q 024712 203 HLAYADVLYTLGGVDNILLAKKYY 226 (263)
Q Consensus 203 ~~~la~~~~~~g~~~~~~~A~~~~ 226 (263)
...+|.++...|+ +++|...+
T Consensus 4 ~~~la~~~~~~G~---~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGD---PDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCC---HHHHHHHH
Confidence 4445555555555 55555444
No 365
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=93.15 E-value=0.5 Score=24.41 Aligned_cols=20 Identities=15% Similarity=0.117 Sum_probs=9.3
Q ss_pred HHHHHHHHHHcCChhHHHHH
Q 024712 135 HKRRVAIAKAQGNFPTAIEW 154 (263)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~ 154 (263)
+..+|..+...|++++|+..
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 34444444555555555555
No 366
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=93.13 E-value=2.4 Score=37.70 Aligned_cols=24 Identities=4% Similarity=-0.028 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHH
Q 024712 134 LHKRRVAIAKAQGNFPTAIEWLNK 157 (263)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~ 157 (263)
++.++|..+.....|++|.++|..
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445444444444444444443
No 367
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.12 E-value=6 Score=40.22 Aligned_cols=147 Identities=13% Similarity=0.045 Sum_probs=98.2
Q ss_pred cCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHH
Q 024712 59 LGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP----ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVL 134 (263)
Q Consensus 59 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 134 (263)
.+.++|.........+++..++--|.+-.-......| ...+.|...|.+....|.++.|...+-++.+.. -+.+
T Consensus 1627 ~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i 1704 (2382)
T KOG0890|consen 1627 NNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEI 1704 (2382)
T ss_pred ccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchH
Confidence 3445666555555444443333222222212222232 457889999999999999999999999888866 4677
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-----------------HHHHHHHHHHHHhcccH--HHHHHHHHHHHhh
Q 024712 135 HKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-----------------HDAWRELAEIYVSLQMY--KQAAFCYEELILS 195 (263)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-----------------~~~~~~la~~~~~~g~~--~~A~~~~~~al~~ 195 (263)
+...|..+...|+...|+..+++.++.+-.+ ..+...++......|++ ++-++.|+.+...
T Consensus 1705 ~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ai 1784 (2382)
T KOG0890|consen 1705 VLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAI 1784 (2382)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 8889999999999999999999999764222 11233344444455554 3567889999999
Q ss_pred CCCCHHHHHHHH
Q 024712 196 QPTVPLYHLAYA 207 (263)
Q Consensus 196 ~p~~~~~~~~la 207 (263)
.|.....++.+|
T Consensus 1785 l~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1785 LPEWEDKHYHLG 1796 (2382)
T ss_pred cccccCceeeHH
Confidence 996655555555
No 368
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=92.97 E-value=0.18 Score=26.41 Aligned_cols=30 Identities=7% Similarity=0.006 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccC
Q 024712 201 LYHLAYADVLYTLGGVDNILLAKKYYASTIDLT 233 (263)
Q Consensus 201 ~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~ 233 (263)
.++..||.+-...++ |++|+..|++++++.
T Consensus 2 dv~~~Lgeisle~e~---f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENEN---FEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhcc---HHHHHHHHHHHHHHH
Confidence 467889999999999 999999999999874
No 369
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.84 E-value=1.4 Score=27.26 Aligned_cols=60 Identities=7% Similarity=-0.093 Sum_probs=46.1
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHH---HHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712 170 RELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHL---AYADVLYTLGGVDNILLAKKYYASTIDL 232 (263)
Q Consensus 170 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---~la~~~~~~g~~~~~~~A~~~~~~al~~ 232 (263)
..-|.-++..++.++|+..+.++++..++.+.-+. .+..+|...|+ +++.+.+-.+=+++
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gk---yr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGK---YREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 44566667889999999999999999888766544 45567888899 99888876654444
No 370
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.60 E-value=4.2 Score=32.00 Aligned_cols=163 Identities=13% Similarity=0.038 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH--------cCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--CChhH
Q 024712 81 DVAKDCIKVLQKQFPESKRVGRLEGILLEA--------KGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ--GNFPT 150 (263)
Q Consensus 81 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~--------~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~ 150 (263)
..|++.-...++.+|..-.++...-.+... ..-++.-+.++..++..+|.+..+|...-.++..- .++..
T Consensus 49 ~~aLklt~elid~npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~r 128 (328)
T COG5536 49 VRALKLTQELIDKNPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGR 128 (328)
T ss_pred HHHHHHhHHHHhhCHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccch
Confidence 356666666677777655555544443333 12245566778888888888888877766666544 45666
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHH------HhcccHHHHHHHHHHHHhhCCCCHHHHHHH---HHHHHhcCCCC---c
Q 024712 151 AIEWLNKYLETFMADHDAWRELAEIY------VSLQMYKQAAFCYEELILSQPTVPLYHLAY---ADVLYTLGGVD---N 218 (263)
Q Consensus 151 A~~~~~~~l~~~p~~~~~~~~la~~~------~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---a~~~~~~g~~~---~ 218 (263)
-....++.++.+|.+.-.|...-.+. ..-..+..-.++-..++..++.|..+|... -...+..|+.. .
T Consensus 129 El~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~ 208 (328)
T COG5536 129 ELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKY 208 (328)
T ss_pred hHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHH
Confidence 67778888888888876665432222 222334444666667778888888777665 34444455521 1
Q ss_pred HHHHHHHHHHhhccCCCcchhHHHhH
Q 024712 219 ILLAKKYYASTIDLTGGKNTKALFGI 244 (263)
Q Consensus 219 ~~~A~~~~~~al~~~~~~~~~~~~~l 244 (263)
+++-+++.-.++-.+|+ +..+|..+
T Consensus 209 l~~eL~~i~~~if~~p~-~~S~w~y~ 233 (328)
T COG5536 209 LEKELEYIFDKIFTDPD-NQSVWGYL 233 (328)
T ss_pred HHHHHHHHHhhhhcCcc-ccchhhHH
Confidence 44555666666666775 44444433
No 371
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=92.56 E-value=2.2 Score=33.23 Aligned_cols=79 Identities=22% Similarity=0.061 Sum_probs=55.1
Q ss_pred ChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHhcC
Q 024712 147 NFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTV------PLYHLAYADVLYTLG 214 (263)
Q Consensus 147 ~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g 214 (263)
.....+..+.++++..... ......+|.-|+..|++++|..+|+.+....... ..+...+..|+...|
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 3445677777777654432 2345678999999999999999999987554322 346677888999999
Q ss_pred CCCcHHHHHHHHHH
Q 024712 215 GVDNILLAKKYYAS 228 (263)
Q Consensus 215 ~~~~~~~A~~~~~~ 228 (263)
+ .+..+...-+
T Consensus 233 ~---~~~~l~~~le 243 (247)
T PF11817_consen 233 D---VEDYLTTSLE 243 (247)
T ss_pred C---HHHHHHHHHH
Confidence 8 7666655443
No 372
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=92.54 E-value=0.44 Score=23.30 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=15.0
Q ss_pred ChHHHHHHHHHHHHhCCCcHHHHHHHH
Q 024712 79 CLDVAKDCIKVLQKQFPESKRVGRLEG 105 (263)
Q Consensus 79 ~~~~A~~~~~~~~~~~p~~~~~~~~~a 105 (263)
+.+.+..+|++++...|.++.+|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 445555566666665555555555443
No 373
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.14 E-value=6.1 Score=32.87 Aligned_cols=127 Identities=15% Similarity=0.097 Sum_probs=85.8
Q ss_pred HHHHHcCcHHHHHHHHHHHHhcC----CCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHHh-----cCCC-HHHHH
Q 024712 106 ILLEAKGLWAEAEKAYSSLLEDN----PLD-----PVLHKRRVAIAKAQGNFPTAIEWLNKYLET-----FMAD-HDAWR 170 (263)
Q Consensus 106 ~~~~~~~~~~~A~~~~~~~~~~~----p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~p~~-~~~~~ 170 (263)
..+....++.+|..+-+..+... -.. ...|+.+..++...|+...-...+...+.. +... .....
T Consensus 134 Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN 213 (493)
T KOG2581|consen 134 LFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLIN 213 (493)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHH
Confidence 33445688999888777766531 111 235677777888888876666666655543 1111 23344
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhh--CCCC--HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 171 ELAEIYVSLQMYKQAAFCYEELILS--QPTV--PLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 171 ~la~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
.|-..|...+.|+.|-....++.-- ..++ ....+.+|.+..-.++ |..|.++|..|+...|.
T Consensus 214 ~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqld---YssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 214 LLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLD---YSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcc---hhHHHHHHHHHHHhCcc
Confidence 5667778889999999888776521 1222 3456678888888899 99999999999999995
No 374
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=91.55 E-value=1.3 Score=33.53 Aligned_cols=63 Identities=10% Similarity=0.032 Sum_probs=56.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH
Q 024712 139 VAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL 201 (263)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 201 (263)
..-+...+...+++...+.-++..|.+......+-.++.-.|+|++|..-++-+-.+.|++..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 345667889999999999999999999999999999999999999999999999999998743
No 375
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=91.29 E-value=6.8 Score=31.75 Aligned_cols=105 Identities=16% Similarity=-0.039 Sum_probs=52.8
Q ss_pred HHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-----------------------
Q 024712 109 EAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD----------------------- 165 (263)
Q Consensus 109 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~----------------------- 165 (263)
.+..+..+-++....+++++|....++..++.- ..--..+|...++++++.....
T Consensus 195 WRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtn 272 (556)
T KOG3807|consen 195 WRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTN 272 (556)
T ss_pred HHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccc
Confidence 344555555666666777777666666555432 2223456666666666542110
Q ss_pred H--HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHhcCC
Q 024712 166 H--DAWRELAEIYVSLQMYKQAAFCYEELILSQPTV--PLYHLAYADVLYTLGG 215 (263)
Q Consensus 166 ~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~ 215 (263)
. .+-..|+.|..++|+..+|++.+....+-.|-. ..++.++-+++....-
T Consensus 273 vl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QA 326 (556)
T KOG3807|consen 273 VLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQA 326 (556)
T ss_pred hhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 0 111235555555566666666655555555422 1234444444444444
No 376
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=91.21 E-value=4.3 Score=34.01 Aligned_cols=59 Identities=12% Similarity=0.176 Sum_probs=33.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHH--------HhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 024712 135 HKRRVAIAKAQGNFPTAIEWLNKYL--------ETFMADHDAWRELAEIYVSLQMYKQAAFCYEELI 193 (263)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~l--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 193 (263)
...+..++.-.|+|..|++.++..= ...+.....++.+|.+|..+++|.+|++.|..++
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666677766666654320 0112223455666777777777777777666655
No 377
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=91.13 E-value=2.8 Score=31.75 Aligned_cols=63 Identities=14% Similarity=-0.001 Sum_probs=56.6
Q ss_pred HHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHH
Q 024712 105 GILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD 167 (263)
Q Consensus 105 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 167 (263)
..-+.+.+...+|+...+.-++.+|.+......+-.++.-.|+|++|...++-+-...|++..
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 345677799999999999999999999999999999999999999999999999999988743
No 378
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.11 E-value=8.7 Score=32.59 Aligned_cols=141 Identities=14% Similarity=0.063 Sum_probs=98.2
Q ss_pred ccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHH
Q 024712 58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKR 137 (263)
Q Consensus 58 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 137 (263)
+.+|.+...|+++...+-.++.+++-.+.++++..-+|--+.+|...-..-...++|.....+|.+++...- +.+.|..
T Consensus 36 kdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l-~ldLW~l 114 (660)
T COG5107 36 KDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL-NLDLWML 114 (660)
T ss_pred hcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc-cHhHHHH
Confidence 448899999999999999999999999999999999997777776655555556889888899999987543 3555544
Q ss_pred HHHHHHHcCC---------hhHHHHHHHHHHHhcCCCHHHHHHHHHHHH---------hcccHHHHHHHHHHHHhhCCCC
Q 024712 138 RVAIAKAQGN---------FPTAIEWLNKYLETFMADHDAWRELAEIYV---------SLQMYKQAAFCYEELILSQPTV 199 (263)
Q Consensus 138 l~~~~~~~g~---------~~~A~~~~~~~l~~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~~al~~~p~~ 199 (263)
.-..-.+.+. .-+|.+..-.+.-.+|.+...|...+..+. .+.+.+.-...|++++...-++
T Consensus 115 Yl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~n 194 (660)
T COG5107 115 YLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGN 194 (660)
T ss_pred HHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCcccc
Confidence 3332222221 223333333333457888888888777653 3455667778889998765444
No 379
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=91.03 E-value=8.5 Score=32.32 Aligned_cols=139 Identities=12% Similarity=-0.008 Sum_probs=76.8
Q ss_pred CcchHHHHHHHHH--HHHHcCChHHHHHHHHHHHHhC-----CCcHHHH--------HHHHHHHHHcCcHHHHHHHHHHH
Q 024712 60 GPDVWTLYEQVSI--AAMDCQCLDVAKDCIKVLQKQF-----PESKRVG--------RLEGILLEAKGLWAEAEKAYSSL 124 (263)
Q Consensus 60 ~~~~~~~~~~la~--~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~--------~~~a~~~~~~~~~~~A~~~~~~~ 124 (263)
+|+.|.++.-+-. .+.+..+..+-+...+...... .....++ ..+.+++.-.|+|..|++.++.+
T Consensus 69 ~~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~i 148 (404)
T PF10255_consen 69 NPDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENI 148 (404)
T ss_pred ccCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhcc
Confidence 4667776654333 3344455555444444321100 0122233 34556677889999999988765
Q ss_pred Hh-------c-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHH-HHHHHhcccHHHHHHHHHHHHhh
Q 024712 125 LE-------D-NPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWREL-AEIYVSLQMYKQAAFCYEELILS 195 (263)
Q Consensus 125 ~~-------~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~ 195 (263)
-- . -+-+...++.+|.+|+.+++|.+|+..|...+-.-.......... ...-...+..++...++--++.+
T Consensus 149 dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l 228 (404)
T PF10255_consen 149 DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSYQYDQINKKNEQMYALLAICLSL 228 (404)
T ss_pred CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHhHHHHHHHHHHHHHHh
Confidence 22 1 122345788999999999999999999999875322111000000 00111124455555555556666
Q ss_pred CCC
Q 024712 196 QPT 198 (263)
Q Consensus 196 ~p~ 198 (263)
.|.
T Consensus 229 ~p~ 231 (404)
T PF10255_consen 229 CPQ 231 (404)
T ss_pred CCC
Confidence 664
No 380
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=90.98 E-value=6.7 Score=31.05 Aligned_cols=74 Identities=5% Similarity=-0.081 Sum_probs=39.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCC--cHHHHHHHHHH---HHHcCcH----HHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 024712 71 SIAAMDCQCLDVAKDCIKVLQKQFPE--SKRVGRLEGIL---LEAKGLW----AEAEKAYSSLLEDNPLDPVLHKRRVAI 141 (263)
Q Consensus 71 a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~a~~---~~~~~~~----~~A~~~~~~~~~~~p~~~~~~~~l~~~ 141 (263)
...++..++|++-...+.+..+...+ ..+..+..+.. .+..... ..-.+.++.-+...|++..++..+|.+
T Consensus 7 ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~ 86 (277)
T PF13226_consen 7 IRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY 86 (277)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 34556778888777777777654332 11111211111 1122111 134556666666777777777777776
Q ss_pred HHH
Q 024712 142 AKA 144 (263)
Q Consensus 142 ~~~ 144 (263)
+..
T Consensus 87 ~~~ 89 (277)
T PF13226_consen 87 WVH 89 (277)
T ss_pred HHH
Confidence 654
No 381
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.43 E-value=7.4 Score=30.67 Aligned_cols=163 Identities=13% Similarity=0.149 Sum_probs=108.7
Q ss_pred hhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHH--------cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 024712 39 PDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMD--------CQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA 110 (263)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~--------~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~ 110 (263)
...++++...++.. +|+...+|.-.-.+... ..-++.-+..+..++..+|.+-.+|...-.++..
T Consensus 48 s~~aLklt~elid~-------npe~ytiwnyr~~I~~h~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~ 120 (328)
T COG5536 48 SVRALKLTQELIDK-------NPEFYTIWNYRFSILKHVQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLEL 120 (328)
T ss_pred CHHHHHHhHHHHhh-------CHHHHHHHhhHHHHHhhhhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHh
Confidence 45566666677766 57666655543322222 1234556678889999999999998888777766
Q ss_pred c--CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH------HHcCChhHHHHHHHHHHHhcCCCHHHHHHH---HHHHHhc
Q 024712 111 K--GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA------KAQGNFPTAIEWLNKYLETFMADHDAWREL---AEIYVSL 179 (263)
Q Consensus 111 ~--~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~------~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l---a~~~~~~ 179 (263)
. ..+..-..+.+++++.++.|..+|...-.+. ..-..+..-.++-..++..++.+..+|... -...+..
T Consensus 121 ~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~ 200 (328)
T COG5536 121 FPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNR 200 (328)
T ss_pred CCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhh
Confidence 5 5677778889999999999987665443333 222334444666667888899999998765 3333334
Q ss_pred cc------HHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 024712 180 QM------YKQAAFCYEELILSQPTVPLYHLAYAD 208 (263)
Q Consensus 180 g~------~~~A~~~~~~al~~~p~~~~~~~~la~ 208 (263)
|+ +++-+++...++-.+|.+..+|..+-.
T Consensus 201 ~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~ 235 (328)
T COG5536 201 GDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRG 235 (328)
T ss_pred cccchHHHHHHHHHHHHhhhhcCccccchhhHHHH
Confidence 43 555667777777888988776655443
No 382
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=90.20 E-value=4.6 Score=31.43 Aligned_cols=81 Identities=12% Similarity=0.011 Sum_probs=58.6
Q ss_pred cHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcc
Q 024712 113 LWAEAEKAYSSLLEDNPLD------PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQ 180 (263)
Q Consensus 113 ~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g 180 (263)
.....++++.++++.-... ......+|..|+..|++++|+..|+.+....... ..+...+..|+...|
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 3445677777777643211 2456689999999999999999999997664433 345667888889999
Q ss_pred cHHHHHHHHHHHH
Q 024712 181 MYKQAAFCYEELI 193 (263)
Q Consensus 181 ~~~~A~~~~~~al 193 (263)
+.+..+.+.-+.+
T Consensus 233 ~~~~~l~~~leLl 245 (247)
T PF11817_consen 233 DVEDYLTTSLELL 245 (247)
T ss_pred CHHHHHHHHHHHh
Confidence 9988877765544
No 383
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=90.04 E-value=0.67 Score=37.43 Aligned_cols=79 Identities=14% Similarity=0.030 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 024712 134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT 212 (263)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 212 (263)
...+++.+-...+.+..|+.....+++.++....+++..+..+....++++|++.++.+....|++..+...+..+-..
T Consensus 277 ~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~ 355 (372)
T KOG0546|consen 277 IRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK 355 (372)
T ss_pred cccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence 4455667777777777777777777777777777788888888888888888888888888888777665555444333
No 384
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=89.92 E-value=9 Score=34.40 Aligned_cols=82 Identities=22% Similarity=0.229 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 024712 98 KRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYV 177 (263)
Q Consensus 98 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~ 177 (263)
..++..+|..+..+..|++|.++|...-.. .+++.+++....+++ ++.....-|.+...+-.+|..+.
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~mf~ 863 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------ENQIECLYRLELFGE----LEVLARTLPEDSELLPVMADMFT 863 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccch--------HhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHHHHH
Confidence 357788888888889999999888775432 245566666666554 34444556777777777788777
Q ss_pred hcccHHHHHHHHHH
Q 024712 178 SLQMYKQAAFCYEE 191 (263)
Q Consensus 178 ~~g~~~~A~~~~~~ 191 (263)
..|.-++|.++|-+
T Consensus 864 svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 864 SVGMCDQAVEAYLR 877 (1189)
T ss_pred hhchHHHHHHHHHh
Confidence 77777777776643
No 385
>PF12854 PPR_1: PPR repeat
Probab=89.78 E-value=1.2 Score=22.54 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHH
Q 024712 133 VLHKRRVAIAKAQGNFPTAIEWLN 156 (263)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~ 156 (263)
..|..+...+.+.|+.++|.+.++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344455555555555555555544
No 386
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=89.71 E-value=9.7 Score=30.93 Aligned_cols=172 Identities=13% Similarity=0.076 Sum_probs=101.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-------------------
Q 024712 68 EQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN------------------- 128 (263)
Q Consensus 68 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------------- 128 (263)
..+.....+..+..+-++.-..+++.+|..+.++..++.--. .-..+|...++++++..
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da 265 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEA 265 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhh
Confidence 345566677888888889999999999998888887765322 22344555555554420
Q ss_pred ----CCCH--HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH--HHHHHHHHHHHhcccHHHHHHHHHHHHhh-CCCC
Q 024712 129 ----PLDP--VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH--DAWRELAEIYVSLQMYKQAAFCYEELILS-QPTV 199 (263)
Q Consensus 129 ----p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~ 199 (263)
..+. .+-..++.|..++|+..+|++.++...+..|-.. .+..+|-..+....-|.+...++-+.-.+ -|..
T Consensus 266 ~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkS 345 (556)
T KOG3807|consen 266 QLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKS 345 (556)
T ss_pred hhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcch
Confidence 1111 2446789999999999999999999988777432 23334555555544444443333322222 1333
Q ss_pred HHHHHHHH-------------HHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHH
Q 024712 200 PLYHLAYA-------------DVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALF 242 (263)
Q Consensus 200 ~~~~~~la-------------~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~ 242 (263)
....+.-+ +...+.|-...-..|++...++++.||. -+..+.
T Consensus 346 A~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPH-VPkYLL 400 (556)
T KOG3807|consen 346 AAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPH-VPKYLL 400 (556)
T ss_pred HHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCC-CcHHHH
Confidence 22222111 1112222222235688999999999996 344433
No 387
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=89.67 E-value=2.5 Score=37.88 Aligned_cols=168 Identities=16% Similarity=0.075 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHH---cCcHHHHHHHHHHHHhcC-CCCH
Q 024712 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPES------KRVGRLEGILLEA---KGLWAEAEKAYSSLLEDN-PLDP 132 (263)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~~a~~~~~---~~~~~~A~~~~~~~~~~~-p~~~ 132 (263)
.+++...+...|.+..+|+.-+++.+.+... |+. ..+.+..+.++-+ -|+-++|+...-.+++.. |-.+
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhC-cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 4566677888888899999888887766543 532 2223334444433 378899999888888764 4456
Q ss_pred HHHHHHHHHHHH---------cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhCC-----
Q 024712 133 VLHKRRVAIAKA---------QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQ-MYKQAAFCYEELILSQP----- 197 (263)
Q Consensus 133 ~~~~~l~~~~~~---------~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p----- 197 (263)
+.+...|.+|.. .+..+.|+.+|+++.+..|..... .+++.++...| +|+...+.-.-.++++.
T Consensus 279 Dm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sG-IN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrK 357 (1226)
T KOG4279|consen 279 DMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSG-INLATLLRAAGEHFENSLELQQIGMKLNSLLGRK 357 (1226)
T ss_pred ceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhcc-ccHHHHHHHhhhhccchHHHHHHHHHHHHHhhcc
Confidence 666666777643 345678999999999998875433 45555555544 34555554444444332
Q ss_pred C---CHHHHHHHHH---HHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 198 T---VPLYHLAYAD---VLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 198 ~---~~~~~~~la~---~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
. ....++..|. +-...++ +.+|+..-+..+++.|.
T Consensus 358 G~leklq~YWdV~~y~~asVLAnd---~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 358 GALEKLQEYWDVATYFEASVLAND---YQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred chHHHHHHHHhHHHhhhhhhhccC---HHHHHHHHHHHhccCCc
Confidence 1 1112222332 2233466 99999999999999885
No 388
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.65 E-value=7 Score=35.60 Aligned_cols=58 Identities=19% Similarity=0.064 Sum_probs=37.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Q 024712 70 VSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED 127 (263)
Q Consensus 70 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 127 (263)
......+...|+-|+.+.+.--.....-..+....|..++..|++++|...|-+.+..
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 3444556677777776654432111123456667788888888888888888887763
No 389
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.44 E-value=13 Score=32.10 Aligned_cols=160 Identities=13% Similarity=0.034 Sum_probs=97.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh
Q 024712 70 VSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP 149 (263)
Q Consensus 70 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 149 (263)
+...+.++..+.-...++.+++.. ..+..+++.++.+|... ..++-...+++..+.+-++...-..++..|.. ++..
T Consensus 72 ~~~~f~~n~k~~~veh~c~~~l~~-~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~s 148 (711)
T COG1747 72 LLTIFGDNHKNQIVEHLCTRVLEY-GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKS 148 (711)
T ss_pred HHHHhccchHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchh
Confidence 344444445555555556665553 34455666677777666 33555666666666666666555566665554 5556
Q ss_pred HHHHHHHHHHHhc--------------------CCCHHHH--------------------HHHHHHHHhcccHHHHHHHH
Q 024712 150 TAIEWLNKYLETF--------------------MADHDAW--------------------RELAEIYVSLQMYKQAAFCY 189 (263)
Q Consensus 150 ~A~~~~~~~l~~~--------------------p~~~~~~--------------------~~la~~~~~~g~~~~A~~~~ 189 (263)
++..+|.+++... |++.+.. ..+-.-|....++++|++.+
T Consensus 149 k~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Il 228 (711)
T COG1747 149 KAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRIL 228 (711)
T ss_pred hHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHH
Confidence 6666666655321 2222211 11123344557899999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHh--------------------cCCCCcHHHHHHHHHHhhccCCC
Q 024712 190 EELILSQPTVPLYHLAYADVLYT--------------------LGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 190 ~~al~~~p~~~~~~~~la~~~~~--------------------~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
...++.+..+..+...+-..+.. -.+ +..+...|++.+..+.+
T Consensus 229 k~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rn---f~~~l~dFek~m~f~eG 291 (711)
T COG1747 229 KHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRN---FFEALNDFEKLMHFDEG 291 (711)
T ss_pred HHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhcccc---HHHHHHHHHHHheeccC
Confidence 99999988888777776665555 223 77788888888877766
No 390
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.21 E-value=1 Score=24.46 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=16.8
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHh
Q 024712 170 RELAEIYVSLQMYKQAAFCYEELIL 194 (263)
Q Consensus 170 ~~la~~~~~~g~~~~A~~~~~~al~ 194 (263)
+.+|..|...|+++.|...+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4566677777777777777776663
No 391
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=89.17 E-value=2.6 Score=29.63 Aligned_cols=49 Identities=27% Similarity=0.210 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 024712 167 DAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 215 (263)
Q Consensus 167 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 215 (263)
+.....+.-.+..|++.-|..+...++..+|++..+....+.++..+|.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 3444555566667777777777777777777777777777777766665
No 392
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=88.89 E-value=4.1 Score=33.78 Aligned_cols=46 Identities=24% Similarity=0.109 Sum_probs=31.7
Q ss_pred ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHH
Q 024712 79 CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSL 124 (263)
Q Consensus 79 ~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 124 (263)
..-+|+-+++.++...|.+..+...+..+|...|-.+.|...|...
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 3456666777777777777777777777777777777777766543
No 393
>PF12854 PPR_1: PPR repeat
Probab=88.61 E-value=1.5 Score=22.11 Aligned_cols=27 Identities=19% Similarity=0.215 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHH
Q 024712 165 DHDAWRELAEIYVSLQMYKQAAFCYEE 191 (263)
Q Consensus 165 ~~~~~~~la~~~~~~g~~~~A~~~~~~ 191 (263)
+...|..+...+.+.|+.++|.+++++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 344566666777777777777776654
No 394
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=88.52 E-value=2.7 Score=29.54 Aligned_cols=46 Identities=20% Similarity=0.169 Sum_probs=28.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCc
Q 024712 68 EQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGL 113 (263)
Q Consensus 68 ~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~ 113 (263)
...+...+..|++.-|..+++.++..+|++..+...++.++.+.|.
T Consensus 74 l~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 74 LERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 3355556666777777777777777777777766666666665544
No 395
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.48 E-value=1.3 Score=23.99 Aligned_cols=25 Identities=12% Similarity=-0.047 Sum_probs=15.2
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHh
Q 024712 102 RLEGILLEAKGLWAEAEKAYSSLLE 126 (263)
Q Consensus 102 ~~~a~~~~~~~~~~~A~~~~~~~~~ 126 (263)
+.+|..|..+|+.+.|.+.++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3456666666666666666666663
No 396
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=88.12 E-value=13 Score=30.29 Aligned_cols=152 Identities=19% Similarity=0.146 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc--------------------------CcHHHHHHHHHHHHhcC-CCCH
Q 024712 80 LDVAKDCIKVLQKQFPESKRVGRLEGILLEAK--------------------------GLWAEAEKAYSSLLEDN-PLDP 132 (263)
Q Consensus 80 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~--------------------------~~~~~A~~~~~~~~~~~-p~~~ 132 (263)
-++|+.+=.-+....|..|++.-.++...++. +-.+++...+.+++... |...
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~rA~~~~~pGPY 291 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSLWDRALIDEGLALLDRALASRRPGPY 291 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhhhhHHHHHHHHHHHHHHHHcCCCChH
Confidence 46788888888889999999888777776543 23467788888887754 4433
Q ss_pred HHHHHHHHHHHH-----cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhh--CCCCHHHHHH
Q 024712 133 VLHKRRVAIAKA-----QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILS--QPTVPLYHLA 205 (263)
Q Consensus 133 ~~~~~l~~~~~~-----~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 205 (263)
..--.++.++-. .-+|..-...|.-.....|+.. +-.+.+....+..-...++...+-.... -......+..
T Consensus 292 qlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPv-V~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~ 370 (415)
T COG4941 292 QLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPV-VTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAA 370 (415)
T ss_pred HHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCe-EeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHH
Confidence 333334444432 2356666666666666666544 3445555555555566777766655543 2234556778
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 206 YADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 206 la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
.|..+..+|+ .++|...|.+++.+.++
T Consensus 371 RadlL~rLgr---~~eAr~aydrAi~La~~ 397 (415)
T COG4941 371 RADLLARLGR---VEEARAAYDRAIALARN 397 (415)
T ss_pred HHHHHHHhCC---hHHHHHHHHHHHHhcCC
Confidence 8999999999 99999999999999876
No 397
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=88.03 E-value=8.8 Score=28.27 Aligned_cols=115 Identities=14% Similarity=0.134 Sum_probs=68.9
Q ss_pred HHHHHHHhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCC--------------hHHHHHHHHHHHH
Q 024712 27 YLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQC--------------LDVAKDCIKVLQK 92 (263)
Q Consensus 27 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------------~~~A~~~~~~~~~ 92 (263)
..+..|++...+.....+....++..+............+...+..+ ..|+ ++.|+.+++.+-+
T Consensus 20 ~c~aFR~~r~~dFr~~rdi~e~ll~~~~~~~a~~~k~l~i~QfLsRI--~eG~~LD~~Fd~~~~~TPLESAl~v~~~I~~ 97 (200)
T cd00280 20 ACRAFREGRYEDFRRTRDIAEALLVGPLKLTATQLKTLRIMQFLSRI--AEGKNLDCQFENDEELTPLESALMVLESIEK 97 (200)
T ss_pred HHHHHHccChHHHHHHHHHHHHHHhccccccccchhHhHHHHHHHHH--HcCCCCCCccCCCCCcChHHHHHHHHHHHHH
Confidence 45666777777777888888888766333332222222332333332 2232 5678888888777
Q ss_pred hCCCcH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 024712 93 QFPESK--------RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKA 144 (263)
Q Consensus 93 ~~p~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 144 (263)
..|... .+......++...|.|++|.+.+++..+ +|++......|..+-..
T Consensus 98 E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~ 156 (200)
T cd00280 98 EFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIRE 156 (200)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHc
Confidence 666321 1222345567788899999999988888 77766655555544433
No 398
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.73 E-value=15 Score=30.68 Aligned_cols=95 Identities=8% Similarity=-0.046 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC--------CCHH
Q 024712 133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDAWRELAEIYVSLQMYKQAAFCYEELILSQP--------TVPL 201 (263)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~ 201 (263)
.++..+|..|...|+.+.|+..|-++-....+. ...|.++-.+-...|+|.....+..++...-. -.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 467788999999999999999999866554333 45677777777888888877777777665410 0122
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 024712 202 YHLAYADVLYTLGGVDNILLAKKYYASTI 230 (263)
Q Consensus 202 ~~~~la~~~~~~g~~~~~~~A~~~~~~al 230 (263)
+...-|.+.+.+++ |+.|.++|-.+.
T Consensus 231 l~C~agLa~L~lkk---yk~aa~~fL~~~ 256 (466)
T KOG0686|consen 231 LKCAAGLANLLLKK---YKSAAKYFLLAE 256 (466)
T ss_pred hHHHHHHHHHHHHH---HHHHHHHHHhCC
Confidence 44445566666778 999988887654
No 399
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=87.28 E-value=5.3 Score=33.16 Aligned_cols=46 Identities=17% Similarity=0.102 Sum_probs=37.7
Q ss_pred CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 024712 112 GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNK 157 (263)
Q Consensus 112 ~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 157 (263)
...-+|+.+++.++..+|.++.....+..+|...|-.+.|...|..
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3456788888888888888888888888888888888888888865
No 400
>PF13041 PPR_2: PPR repeat family
Probab=87.11 E-value=3.5 Score=22.72 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=5.5
Q ss_pred HcCcHHHHHHHHHHH
Q 024712 110 AKGLWAEAEKAYSSL 124 (263)
Q Consensus 110 ~~~~~~~A~~~~~~~ 124 (263)
+.|++++|.++|++.
T Consensus 15 ~~~~~~~a~~l~~~M 29 (50)
T PF13041_consen 15 KAGKFEEALKLFKEM 29 (50)
T ss_pred HCcCHHHHHHHHHHH
Confidence 333333333333333
No 401
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.74 E-value=20 Score=31.06 Aligned_cols=149 Identities=13% Similarity=-0.021 Sum_probs=102.5
Q ss_pred CCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHH
Q 024712 95 PESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAE 174 (263)
Q Consensus 95 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~ 174 (263)
|-+...+..+-.++....++.-....+.+++.. ..+..++..++.+|... ..++-...+++.++.+-++...-..|+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~-~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY-GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 444555566666666666777777788888876 45567788999999888 5567788899999999998888888888
Q ss_pred HHHhcccHHHHHHHHHHHHhhC--------------------CCCHHHHHH------------HH-----HHHHhcCCCC
Q 024712 175 IYVSLQMYKQAAFCYEELILSQ--------------------PTVPLYHLA------------YA-----DVLYTLGGVD 217 (263)
Q Consensus 175 ~~~~~g~~~~A~~~~~~al~~~--------------------p~~~~~~~~------------la-----~~~~~~g~~~ 217 (263)
.|.. ++-+.+..+|.+++... |++.+.... .+ .++-.-...+
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 8766 77788888887776431 333221111 11 1111111134
Q ss_pred cHHHHHHHHHHhhccCCCcchhHHHhHHHH
Q 024712 218 NILLAKKYYASTIDLTGGKNTKALFGICLV 247 (263)
Q Consensus 218 ~~~~A~~~~~~al~~~~~~~~~~~~~l~~~ 247 (263)
++.+|+......++.+.. +.++.-.++..
T Consensus 220 N~~eai~Ilk~il~~d~k-~~~ar~~~i~~ 248 (711)
T COG1747 220 NWTEAIRILKHILEHDEK-DVWARKEIIEN 248 (711)
T ss_pred CHHHHHHHHHHHhhhcch-hhhHHHHHHHH
Confidence 599999999999999874 88887766544
No 402
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=85.83 E-value=17 Score=29.40 Aligned_cols=173 Identities=12% Similarity=0.003 Sum_probs=100.1
Q ss_pred cccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCC--cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc---CC
Q 024712 57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQ--FPE--SKRVGRLEGILLEAKGLWAEAEKAYSSLLED---NP 129 (263)
Q Consensus 57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p 129 (263)
-.+.|+...+.+..+...+..|+|..|-.++=..... .|+ ...+....-..-.-+.+|+.|.+.+.+.-+. ++
T Consensus 122 ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLre~IDs~~ 201 (432)
T KOG2758|consen 122 YNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLREYIDSKS 201 (432)
T ss_pred cCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcccc
Confidence 4568899999999999999999999998775443333 332 2333333333445568899999888776553 22
Q ss_pred CCH--HHHHHHHH----HHHHcCChhHHHHHHHHHH--------HhcCCCHHHHHHHHHHHHhc-ccHHHHHHHHHHHHh
Q 024712 130 LDP--VLHKRRVA----IAKAQGNFPTAIEWLNKYL--------ETFMADHDAWRELAEIYVSL-QMYKQAAFCYEELIL 194 (263)
Q Consensus 130 ~~~--~~~~~l~~----~~~~~g~~~~A~~~~~~~l--------~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~ 194 (263)
-.. ........ .++-.-++.++...+-..+ .+....|..+..|+.+-.-. .+...+++-+-++++
T Consensus 202 f~~~~~~l~qRtWLiHWslfv~fnhpkgrd~iid~fly~p~YLNaIQt~cPhllRYLatAvvtnk~~rr~~lkdlvkVIq 281 (432)
T KOG2758|consen 202 FSTSAQQLQQRTWLIHWSLFVFFNHPKGRDTIIDMFLYQPPYLNAIQTSCPHLLRYLATAVVTNKRRRRNRLKDLVKVIQ 281 (432)
T ss_pred cccHHHHHHHHHHHHHHHHHhhccCCChhhHHHHHHccCHHHHHHHHhhCHHHHHHHHHHhhcchHhhHHHHHHHHHHHH
Confidence 221 11111111 1111112222222211111 12224456667777666554 667788888888887
Q ss_pred hCCCC-HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712 195 SQPTV-PLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (263)
Q Consensus 195 ~~p~~-~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~ 232 (263)
..... .+.....-.|++-.-+ ++.|...++++-+.
T Consensus 282 qE~ysYkDPiteFl~clyvn~D---FdgAq~kl~eCeeV 317 (432)
T KOG2758|consen 282 QESYSYKDPITEFLECLYVNYD---FDGAQKKLRECEEV 317 (432)
T ss_pred HhccccCCcHHHHHHHHhhccc---hHHHHHHHHHHHHH
Confidence 65422 2233445567777778 99998888877543
No 403
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.62 E-value=16 Score=28.86 Aligned_cols=192 Identities=10% Similarity=0.064 Sum_probs=105.9
Q ss_pred cCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CcHHHHHHHHHHHH
Q 024712 36 VRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLE 109 (263)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~ 109 (263)
...+++++.-...++.- ....+.=-+.++.++..+.++.+++++-...|.+++.--. .+.......-+.-.
T Consensus 40 e~~p~~Al~sF~kVlel---EgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiS 116 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLEL---EGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIS 116 (440)
T ss_pred ccCHHHHHHHHHHHHhc---ccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHh
Confidence 34566666666665544 1111111334677888999999999999888887765321 01111111111111
Q ss_pred HcCcHHHHHHHHHHHHhc--CCCCHH----HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------------HHHHHH
Q 024712 110 AKGLWAEAEKAYSSLLED--NPLDPV----LHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------------HDAWRE 171 (263)
Q Consensus 110 ~~~~~~~A~~~~~~~~~~--~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------------~~~~~~ 171 (263)
...+.+--..+|+.-+.. +..+.. ....+|.+++..|.+.+-...+++.-.....+ .+++..
T Consensus 117 tS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAl 196 (440)
T KOG1464|consen 117 TSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYAL 196 (440)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhh
Confidence 223333333344433321 122222 33468888988888877766666654432211 233444
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhhCCCC--HHHHH----HHHHHHHhcCCCCcHHHHHHHHHHhhccC
Q 024712 172 LAEIYVSLQMYKQAAFCYEELILSQPTV--PLYHL----AYADVLYTLGGVDNILLAKKYYASTIDLT 233 (263)
Q Consensus 172 la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~----~la~~~~~~g~~~~~~~A~~~~~~al~~~ 233 (263)
-..+|-.+++-.+-..+|++++.+...- |.+.- .=|..+...|+ +++|...|-.+++-.
T Consensus 197 EIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~---fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 197 EIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGE---FEKAHTDFFEAFKNY 261 (440)
T ss_pred HhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccch---HHHHHhHHHHHHhcc
Confidence 4566777777777778888888664322 22222 22445566677 888888888887653
No 404
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=85.31 E-value=17 Score=28.86 Aligned_cols=28 Identities=14% Similarity=0.098 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 024712 83 AKDCIKVLQKQFPESKRVGRLEGILLEA 110 (263)
Q Consensus 83 A~~~~~~~~~~~p~~~~~~~~~a~~~~~ 110 (263)
-...++.-++..|++..++..+|..+..
T Consensus 62 ~~~~LkaWv~a~P~Sy~A~La~g~~~~~ 89 (277)
T PF13226_consen 62 RLAVLKAWVAACPKSYHAHLAMGMYWVH 89 (277)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 4556666667777777777777776654
No 405
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.29 E-value=21 Score=29.93 Aligned_cols=95 Identities=14% Similarity=0.077 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc----------CC
Q 024712 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP---ESKRVGRLEGILLEAKGLWAEAEKAYSSLLED----------NP 129 (263)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------~p 129 (263)
.-.++..++..|...|+++.|++.|.++-.-.- .....+.++-.+-...|+|..-..+..++... -|
T Consensus 149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence 345678899999999999999999988554333 23345566667777788888877777777653 11
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 024712 130 LDPVLHKRRVAIAKAQGNFPTAIEWLNKYL 159 (263)
Q Consensus 130 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 159 (263)
.. ....-|.+...++++..|..++-.+.
T Consensus 229 ~k--l~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 229 AK--LKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred cc--hHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 22 23334444555668888877776543
No 406
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=84.84 E-value=20 Score=29.26 Aligned_cols=128 Identities=13% Similarity=0.106 Sum_probs=85.1
Q ss_pred CChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHc-----CcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHH
Q 024712 78 QCLDVAKDCIKVLQKQF-PESKRVGRLEGILLEAK-----GLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTA 151 (263)
Q Consensus 78 ~~~~~A~~~~~~~~~~~-p~~~~~~~~~a~~~~~~-----~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 151 (263)
+-.+++...+.++.... |.-..+.-.++-++... -+|..-..+|.......|+.... .+.+.......-...+
T Consensus 270 ~lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~-LNRAVAla~~~Gp~ag 348 (415)
T COG4941 270 ALIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVT-LNRAVALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEe-ehHHHHHHHhhhHHhH
Confidence 44677788888887754 44333333444444332 46777777888877777765443 4455555555556667
Q ss_pred HHHHHHHHHh--cCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHH
Q 024712 152 IEWLNKYLET--FMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAY 206 (263)
Q Consensus 152 ~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 206 (263)
+...+..... -......+...|.++.+.|+.++|...|++++.+.++.....+..
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~ 405 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLR 405 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHH
Confidence 7777666554 223344566789999999999999999999999998876654433
No 407
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=84.18 E-value=24 Score=29.59 Aligned_cols=60 Identities=20% Similarity=0.093 Sum_probs=43.4
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHH--HHHHHHH--HHHHcCChhHHHHHHHHHHHh
Q 024712 102 RLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV--LHKRRVA--IAKAQGNFPTAIEWLNKYLET 161 (263)
Q Consensus 102 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~--~~~~l~~--~~~~~g~~~~A~~~~~~~l~~ 161 (263)
...+..++..++|..|...+..+...-|.... .+..+.. .+...-++.+|...+++.+..
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45677788999999999999999985333332 3444433 344677899999999987764
No 408
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=83.92 E-value=2.4 Score=20.23 Aligned_cols=22 Identities=18% Similarity=0.415 Sum_probs=10.3
Q ss_pred HHHHHHHhcccHHHHHHHHHHH
Q 024712 171 ELAEIYVSLQMYKQAAFCYEEL 192 (263)
Q Consensus 171 ~la~~~~~~g~~~~A~~~~~~a 192 (263)
.+-..|...|++++|.+.|++.
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 5 SLISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHHHHccchHHHHHHHHHHH
Confidence 3444444444444444444443
No 409
>PF13041 PPR_2: PPR repeat family
Probab=83.85 E-value=5.4 Score=21.95 Aligned_cols=28 Identities=14% Similarity=0.249 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhh
Q 024712 168 AWRELAEIYVSLQMYKQAAFCYEELILS 195 (263)
Q Consensus 168 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 195 (263)
.|..+-..+.+.|++++|.++|++..+.
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 4445555555555555555555555543
No 410
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=83.81 E-value=32 Score=30.85 Aligned_cols=50 Identities=18% Similarity=0.062 Sum_probs=27.3
Q ss_pred HHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHh
Q 024712 174 EIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST 229 (263)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~a 229 (263)
.+....+++.+|....++.-+.- +.+++..|+-+....+ +++|.+.|.++
T Consensus 781 qlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLAE~Dr---FeEAqkAfhkA 830 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLAENDR---FEEAQKAFHKA 830 (1081)
T ss_pred hheeecccchHhHhhhhhCcccc---ccccchHHHHhhhhhh---HHHHHHHHHHh
Confidence 34455566777766555433332 3345555655555555 66666665554
No 411
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=83.65 E-value=25 Score=29.54 Aligned_cols=57 Identities=12% Similarity=0.161 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHH-------HHHHHHHHHHhcccHHHHHHHHHHHHh
Q 024712 134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHD-------AWRELAEIYVSLQMYKQAAFCYEELIL 194 (263)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~ 194 (263)
++..+..++.-+|++ +| --+.++++|.... +-+..|.+|...++|.+|++.|..++.
T Consensus 237 sL~GLlR~H~lLgDh-Qa---t~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLl 300 (525)
T KOG3677|consen 237 SLLGLLRMHILLGDH-QA---TSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILL 300 (525)
T ss_pred HHHHHHHHHHHhhhh-Hh---hhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666678884 44 4455666665421 226789999999999999999988774
No 412
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=83.28 E-value=13 Score=25.82 Aligned_cols=47 Identities=9% Similarity=-0.149 Sum_probs=29.6
Q ss_pred HHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHH
Q 024712 75 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYS 122 (263)
Q Consensus 75 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 122 (263)
.+.+.....+.+++.++..++.++.....+...|... +..+.+..++
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 4456777777777777777666666666666666543 3344445544
No 413
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=82.95 E-value=39 Score=31.12 Aligned_cols=50 Identities=18% Similarity=-0.043 Sum_probs=22.4
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHH
Q 024712 87 IKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHK 136 (263)
Q Consensus 87 ~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 136 (263)
++.-...++.+......+-.++...|++++-...-..+.+..|..+..|.
T Consensus 102 ~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl 151 (881)
T KOG0128|consen 102 LEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWL 151 (881)
T ss_pred HHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHH
Confidence 33333333444444444444555555554444444444444444444443
No 414
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.56 E-value=14 Score=32.57 Aligned_cols=131 Identities=18% Similarity=0.149 Sum_probs=74.7
Q ss_pred HHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 024712 75 MDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEW 154 (263)
Q Consensus 75 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 154 (263)
...|+++.|...+..+ | .......+..+..+|-.++|+ +..++ ++-.+ .+..+.|+++.|.+.
T Consensus 597 vmrrd~~~a~~vLp~I----~--k~~rt~va~Fle~~g~~e~AL-------~~s~D-~d~rF---elal~lgrl~iA~~l 659 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTI----P--KEIRTKVAHFLESQGMKEQAL-------ELSTD-PDQRF---ELALKLGRLDIAFDL 659 (794)
T ss_pred hhhccccccccccccC----c--hhhhhhHHhHhhhccchHhhh-------hcCCC-hhhhh---hhhhhcCcHHHHHHH
Confidence 3346666665543222 2 122334455666666655554 33333 22222 234567777777665
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhC--------CCCHHHHHHHH-------------HHHHhc
Q 024712 155 LNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQ--------PTVPLYHLAYA-------------DVLYTL 213 (263)
Q Consensus 155 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la-------------~~~~~~ 213 (263)
..++ ++..-|..||.+....+++..|.+|+.++.... ..+...+..+| .+++..
T Consensus 660 a~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~ 734 (794)
T KOG0276|consen 660 AVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLS 734 (794)
T ss_pred HHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHc
Confidence 5443 556678888888888888888888888875432 22333222222 356667
Q ss_pred CCCCcHHHHHHHHHHhh
Q 024712 214 GGVDNILLAKKYYASTI 230 (263)
Q Consensus 214 g~~~~~~~A~~~~~~al 230 (263)
|+ +++..+.+.+.-
T Consensus 735 g~---~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 735 GD---YEECLELLISTQ 748 (794)
T ss_pred CC---HHHHHHHHHhcC
Confidence 77 888777776653
No 415
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=81.39 E-value=15 Score=25.17 Aligned_cols=26 Identities=12% Similarity=-0.064 Sum_probs=15.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHh
Q 024712 136 KRRVAIAKAQGNFPTAIEWLNKYLET 161 (263)
Q Consensus 136 ~~l~~~~~~~g~~~~A~~~~~~~l~~ 161 (263)
..+|...+..+++-.++-.|++++.+
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~ 30 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSL 30 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 34555666666666666666666654
No 416
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=81.31 E-value=14 Score=25.73 Aligned_cols=53 Identities=21% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHh
Q 024712 174 EIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYAST 229 (263)
Q Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~a 229 (263)
.....+|+-++--+.+...++....+|.....+|.+|-+.|+ ..+|.+.+.+|
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~---~r~~~ell~~A 146 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGN---TREANELLKEA 146 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT----HHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcc---hhhHHHHHHHH
No 417
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=81.27 E-value=15 Score=25.23 Aligned_cols=76 Identities=21% Similarity=0.343 Sum_probs=45.5
Q ss_pred CChhHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHhcccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHhcC
Q 024712 146 GNFPTAIEWLNKYLETFMAD---------HDAWRELAEIYVSLQMYKQAAFCYEELILS--QPTVPLYHLAYADVLYTLG 214 (263)
Q Consensus 146 g~~~~A~~~~~~~l~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g 214 (263)
+....-...+++++....++ ..+|...+. .- +.+..+|..+... ....+..+...|..+...|
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~----~~--~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~ 113 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYAD----LS--SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRG 113 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT----TB--SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH----Hc--cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcC
Confidence 34455556777777665443 223333332 11 2666777766643 3455667777888888888
Q ss_pred CCCcHHHHHHHHHHhh
Q 024712 215 GVDNILLAKKYYASTI 230 (263)
Q Consensus 215 ~~~~~~~A~~~~~~al 230 (263)
+ +++|.+.|+.++
T Consensus 114 ~---~~~A~~I~~~Gi 126 (126)
T PF08311_consen 114 N---FKKADEIYQLGI 126 (126)
T ss_dssp ----HHHHHHHHHHHH
T ss_pred C---HHHHHHHHHhhC
Confidence 8 888888887664
No 418
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=81.12 E-value=8.6 Score=34.16 Aligned_cols=77 Identities=14% Similarity=0.091 Sum_probs=38.6
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccH
Q 024712 103 LEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMY 182 (263)
Q Consensus 103 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 182 (263)
..+..+.....+.-|.+.|+++-. ...+..++...++|++|....++.-+.-| ++++..|..+....++
T Consensus 752 ~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~~~---dVy~pyaqwLAE~DrF 820 (1081)
T KOG1538|consen 752 LCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPEFKD---DVYMPYAQWLAENDRF 820 (1081)
T ss_pred HHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCccccc---cccchHHHHhhhhhhH
Confidence 334444444444445554444322 12345566677888888776665433322 3444445555445455
Q ss_pred HHHHHHHH
Q 024712 183 KQAAFCYE 190 (263)
Q Consensus 183 ~~A~~~~~ 190 (263)
++|.+.|.
T Consensus 821 eEAqkAfh 828 (1081)
T KOG1538|consen 821 EEAQKAFH 828 (1081)
T ss_pred HHHHHHHH
Confidence 55444443
No 419
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.97 E-value=40 Score=29.97 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHH
Q 024712 133 VLHKRRVAIAKAQGNFPTAIEWLNKY 158 (263)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 158 (263)
.-|..||......|++..|.+++.++
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhh
Confidence 34455555555555555555555544
No 420
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.69 E-value=34 Score=29.75 Aligned_cols=113 Identities=13% Similarity=0.033 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHH----HHHHHHHHHHHcCChhHHHHHHH
Q 024712 81 DVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPV----LHKRRVAIAKAQGNFPTAIEWLN 156 (263)
Q Consensus 81 ~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~ 156 (263)
....+.+.......|.++......+..+...|+.+.|+..++..++ +.-.. .++.++.++.-+.+|..|-..+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q ss_pred HHHHhcCCCHHHHHHHH---------HHHHhcccHHHHHHHHHHHHhh
Q 024712 157 KYLETFMADHDAWRELA---------EIYVSLQMYKQAAFCYEELILS 195 (263)
Q Consensus 157 ~~l~~~p~~~~~~~~la---------~~~~~~g~~~~A~~~~~~al~~ 195 (263)
.......=+.-.+..++ .+....|+-+.|-.+++....+
T Consensus 328 ~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l 375 (546)
T KOG3783|consen 328 LLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEEL 375 (546)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHH
No 421
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.63 E-value=29 Score=28.14 Aligned_cols=96 Identities=16% Similarity=0.127 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-CCC------HHHHHHHHHHHHHcCChhHHHHHHHHHH--HhcCCCHHHH
Q 024712 99 RVGRLEGILLEAKGLWAEAEKAYSSLLEDN-PLD------PVLHKRRVAIAKAQGNFPTAIEWLNKYL--ETFMADHDAW 169 (263)
Q Consensus 99 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~l--~~~p~~~~~~ 169 (263)
.+...+|.+|...++|..|...+..+-... +.. ...+..++.+|...++..+|..+..++- ..+..+....
T Consensus 104 ~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lq 183 (399)
T KOG1497|consen 104 SIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQ 183 (399)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHH
Confidence 456789999999999999988776543222 111 2356788999999999999999988863 3345665555
Q ss_pred HHH----HHHHHhcccHHHHHHHHHHHHh
Q 024712 170 REL----AEIYVSLQMYKQAAFCYEELIL 194 (263)
Q Consensus 170 ~~l----a~~~~~~g~~~~A~~~~~~al~ 194 (263)
..+ |.++-..++|-+|...|.+...
T Consensus 184 ie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 184 IEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 4444456777777776665543
No 422
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=80.46 E-value=30 Score=28.17 Aligned_cols=98 Identities=12% Similarity=-0.018 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCHH----H
Q 024712 133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD------HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVPL----Y 202 (263)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~ 202 (263)
.++.+.+..|.+.|+.+.|.+.+.+..+..-.- .-....+|.+|....-..+.++..+..++... +++ .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~Gg-DWeRrNRl 183 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGG-DWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCC-ChhhhhhH
Confidence 466667777777777777777666655532211 11233455555554444444444444444332 221 1
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhhccCC
Q 024712 203 HLAYADVLYTLGGVDNILLAKKYYASTIDLTG 234 (263)
Q Consensus 203 ~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~ 234 (263)
...-|.-.+...+ +.+|-..|..++....
T Consensus 184 KvY~Gly~msvR~---Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 184 KVYQGLYCMSVRN---FKEAADLFLDSVSTFT 212 (393)
T ss_pred HHHHHHHHHHHHh---HHHHHHHHHHHccccc
Confidence 1222333334455 6666666666665443
No 423
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=80.21 E-value=5.2 Score=19.46 Aligned_cols=24 Identities=8% Similarity=0.019 Sum_probs=13.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Q 024712 69 QVSIAAMDCQCLDVAKDCIKVLQK 92 (263)
Q Consensus 69 ~la~~~~~~~~~~~A~~~~~~~~~ 92 (263)
.+...+.+.|++++|.++|..+.+
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 5 TLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344455566666666666665544
No 424
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=80.08 E-value=36 Score=28.90 Aligned_cols=154 Identities=15% Similarity=0.142 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHH------HHHHHHHHHHcCc--------------HHHHHHHHHHH
Q 024712 65 TLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRV------GRLEGILLEAKGL--------------WAEAEKAYSSL 124 (263)
Q Consensus 65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~------~~~~a~~~~~~~~--------------~~~A~~~~~~~ 124 (263)
.....+|..++-.++|+.|..+|+.+...+..+... .-+.|.+.+..+. ++.|...|.++
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 345568999999999999999999999877643322 2233444444442 23333334442
Q ss_pred H----hcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh--c--CC---CHHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 024712 125 L----EDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET--F--MA---DHDAWRELAEIYVSLQMYKQAAFCYEELI 193 (263)
Q Consensus 125 ~----~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~--p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al 193 (263)
- ........+....+.++...|.+.+|...+-++... . .. ..-.+..+|.++ ..+
T Consensus 289 ~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~--------------~~~ 354 (414)
T PF12739_consen 289 ALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCY--------------ASL 354 (414)
T ss_pred hccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhh--------------ccc
Confidence 1 111122234555666777788877777766666554 1 22 233344445554 111
Q ss_pred hh-CC--C-----CHHHHHH-HHHHHHhcCCCCcHHHHHHHHHHhhccCCC
Q 024712 194 LS-QP--T-----VPLYHLA-YADVLYTLGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 194 ~~-~p--~-----~~~~~~~-la~~~~~~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
.. .| . -...+.. -|.-|...|+ ...|...|.+++....+
T Consensus 355 ~~~~~~~~~~r~RK~af~~vLAg~~~~~~~~---~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 355 RSNRPSPGLTRFRKYAFHMVLAGHRYSKAGQ---KKHALRCYKQALQVYEG 402 (414)
T ss_pred ccCCCCccchhhHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHhCC
Confidence 11 11 1 0112333 3678888999 99999999999887553
No 425
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=79.47 E-value=10 Score=28.19 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcC
Q 024712 132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFM 163 (263)
Q Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 163 (263)
+.++..++.++...|+.++|.....++....|
T Consensus 144 ~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 144 PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33444444444444444444444444444444
No 426
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=79.13 E-value=5.9 Score=19.31 Aligned_cols=27 Identities=15% Similarity=0.135 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 024712 66 LYEQVSIAAMDCQCLDVAKDCIKVLQK 92 (263)
Q Consensus 66 ~~~~la~~~~~~~~~~~A~~~~~~~~~ 92 (263)
.|..+...+.+.|+++.|..+++.+.+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345566666777777777777776655
No 427
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=79.05 E-value=2.2 Score=34.65 Aligned_cols=112 Identities=17% Similarity=0.034 Sum_probs=81.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhC---C--------C--------cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCC
Q 024712 71 SIAAMDCQCLDVAKDCIKVLQKQF---P--------E--------SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLD 131 (263)
Q Consensus 71 a~~~~~~~~~~~A~~~~~~~~~~~---p--------~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~ 131 (263)
+...+..+++..|..-+.+..... | + -......++.+-+..+.+..|+.....++..++..
T Consensus 229 ~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~ 308 (372)
T KOG0546|consen 229 GNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSK 308 (372)
T ss_pred chhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccChhh
Confidence 444566677777666665554421 1 1 11233456677777888888888878888888888
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccH
Q 024712 132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMY 182 (263)
Q Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 182 (263)
..+++..+..+....++++|++.++.+....|++..+...+...-....++
T Consensus 309 tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~ 359 (372)
T KOG0546|consen 309 TKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY 359 (372)
T ss_pred CcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence 889999999999999999999999999999999988766665554444433
No 428
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=78.94 E-value=34 Score=28.01 Aligned_cols=165 Identities=15% Similarity=0.057 Sum_probs=109.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-----CCCHH--HH
Q 024712 69 QVSIAAMDCQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDN-----PLDPV--LH 135 (263)
Q Consensus 69 ~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~--~~ 135 (263)
.++..|++.++|.+|+.....++.... .-.++...-..+|....+..+|...+..+-... |.... .-
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lD 212 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLD 212 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHH
Confidence 377788999999999998887776432 234556667788888888888887777665431 11111 22
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhcC---CCHHHH---HHHHHHHHhcccHHHH--HHHHHHHHhhCCCCHHHHHHHH
Q 024712 136 KRRVAIAKAQGNFPTAIEWLNKYLETFM---ADHDAW---RELAEIYVSLQMYKQA--AFCYEELILSQPTVPLYHLAYA 207 (263)
Q Consensus 136 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~---~~la~~~~~~g~~~~A--~~~~~~al~~~p~~~~~~~~la 207 (263)
..-|.++....+|.-|..+|-++++-+. .+..+. -.+-.|-...+..++- +-.-+.+++....+..+...++
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavA 292 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVA 292 (411)
T ss_pred HhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHH
Confidence 2335555666899999999999987532 223333 3333444455665544 4444567777777888888888
Q ss_pred HHHHhcCCCCcHHHHHHHHHHhhccCC
Q 024712 208 DVLYTLGGVDNILLAKKYYASTIDLTG 234 (263)
Q Consensus 208 ~~~~~~g~~~~~~~A~~~~~~al~~~~ 234 (263)
.++.+.. ..+++.|...|..-+..+|
T Consensus 293 eA~~nRS-LkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 293 EAFGNRS-LKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHhcCCc-HHHHHHHHHHhHHHHhcCh
Confidence 8876542 1229999999998888877
No 429
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=78.14 E-value=31 Score=27.11 Aligned_cols=35 Identities=17% Similarity=0.163 Sum_probs=19.6
Q ss_pred hCCCCHHHHHHHHH-HHHhcCCCCcHHHHHHHHHHhhcc
Q 024712 195 SQPTVPLYHLAYAD-VLYTLGGVDNILLAKKYYASTIDL 232 (263)
Q Consensus 195 ~~p~~~~~~~~la~-~~~~~g~~~~~~~A~~~~~~al~~ 232 (263)
-.|.....+...|. .|...++ ...|...+..-++.
T Consensus 135 ~~~~e~dlfi~RaVL~yL~l~n---~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 135 GYPSEADLFIARAVLQYLCLGN---LRDANELFDTFTSK 170 (260)
T ss_dssp TSS--HHHHHHHHHHHHHHTTB---HHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHhcC---HHHHHHHHHHHHHH
Confidence 34555555544443 5556688 88787766555544
No 430
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=78.13 E-value=6 Score=20.25 Aligned_cols=33 Identities=9% Similarity=-0.086 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccC
Q 024712 201 LYHLAYADVLYTLGGVDNILLAKKYYASTIDLT 233 (263)
Q Consensus 201 ~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~ 233 (263)
...+++|+++.+.....+..+.+..++..+...
T Consensus 2 qt~FnyAw~Lv~S~~~~d~~~Gi~lLe~l~~~~ 34 (35)
T PF14852_consen 2 QTQFNYAWGLVKSNNREDQQEGIALLEELYRDE 34 (35)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHCCCS
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence 345667777777766555666777766665543
No 431
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=77.70 E-value=2.9 Score=31.99 Aligned_cols=20 Identities=20% Similarity=0.037 Sum_probs=12.5
Q ss_pred HHcCcHHHHHHHHHHHHhcC
Q 024712 109 EAKGLWAEAEKAYSSLLEDN 128 (263)
Q Consensus 109 ~~~~~~~~A~~~~~~~~~~~ 128 (263)
+..|+|+.|+.+..-+++.+
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~ 113 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHG 113 (230)
T ss_pred eeccCHHHHHHHHHHHHHcC
Confidence 44566666666666666654
No 432
>PRK11619 lytic murein transglycosylase; Provisional
Probab=77.45 E-value=56 Score=29.65 Aligned_cols=154 Identities=14% Similarity=0.057 Sum_probs=89.2
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChh
Q 024712 74 AMDCQCLDVAKDCIKVLQKQFPESK----RVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFP 149 (263)
Q Consensus 74 ~~~~~~~~~A~~~~~~~~~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 149 (263)
-+...+.+.|...+.+.....+-+. .+...+|.-....+...+|..++..+.... .+.........+....++++
T Consensus 251 Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~dw~ 329 (644)
T PRK11619 251 SVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALGTGDRR 329 (644)
T ss_pred HHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHHccCHH
Confidence 3345677888888887655443221 223334433333322456677766655432 22333333444555777887
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH----------------------------H
Q 024712 150 TAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP----------------------------L 201 (263)
Q Consensus 150 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------------------------~ 201 (263)
.+...+...-..........+-+|..+...|+.++|...|+++... .+.. .
T Consensus 330 ~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~-~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~ 408 (644)
T PRK11619 330 GLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ-RGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQG 408 (644)
T ss_pred HHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC-CCcHHHHHHHHcCCCCCCCCCCCCchhhhhccC
Confidence 7766666644433445566677888877788888888888876431 1100 0
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712 202 YHLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (263)
Q Consensus 202 ~~~~la~~~~~~g~~~~~~~A~~~~~~al~~ 232 (263)
.....+..++..|. ...|...+..++..
T Consensus 409 ~~~~ra~~L~~~g~---~~~a~~ew~~~~~~ 436 (644)
T PRK11619 409 PEMARVRELMYWNM---DNTARSEWANLVAS 436 (644)
T ss_pred hHHHHHHHHHHCCC---HHHHHHHHHHHHhc
Confidence 22344566667777 77787777776654
No 433
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=76.49 E-value=35 Score=26.83 Aligned_cols=186 Identities=15% Similarity=0.087 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHcCcHH-HHHHHHHHHHhc------CCCC
Q 024712 64 WTLYEQVSIAAMDCQCLDVAKDCIKVLQKQF-----PESKRVGRLEGILLEAKGLWA-EAEKAYSSLLED------NPLD 131 (263)
Q Consensus 64 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~a~~~~~~~~~~-~A~~~~~~~~~~------~p~~ 131 (263)
.+++..-+..+++.|++..|.++..-+++.. |.+......+..+....+.-+ +-..+.++++.. .-.+
T Consensus 10 idLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gd 89 (260)
T PF04190_consen 10 IDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGD 89 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCC
Confidence 3445555666666677666665554444421 223333334444444332111 122233333322 2246
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHH----------------HHHhcCCCHHHHHHHHHH-HHhcccHHHHHHHHHHHHh
Q 024712 132 PVLHKRRVAIAKAQGNFPTAIEWLNK----------------YLETFMADHDAWRELAEI-YVSLQMYKQAAFCYEELIL 194 (263)
Q Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~----------------~l~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~ 194 (263)
+..+..+|..+.+.|++.+|..+|-. ..+..|...+.+...+.+ |...++...|...+...++
T Consensus 90 p~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 90 PELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 78888999999999988888776632 112356666666665544 5567899988887776665
Q ss_pred h----CC-----------CCHHH-HHHHHHHHHhcCCCCcHHHHHHHHHHhhccCCCcchhHHHhHHHHHhh
Q 024712 195 S----QP-----------TVPLY-HLAYADVLYTLGGVDNILLAKKYYASTIDLTGGKNTKALFGICLVMFV 250 (263)
Q Consensus 195 ~----~p-----------~~~~~-~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~~~~~~~~~~l~~~~~~ 250 (263)
. +| ..|.. ...+-..-...++.+.+..-.+.|+..++.+|. ....+-.+...+++
T Consensus 170 ~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~-~~~~L~~IG~~yFg 240 (260)
T PF04190_consen 170 KLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKRDPS-FKEYLDKIGQLYFG 240 (260)
T ss_dssp HHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---HHHH-THHHHHHHHHHHH-
T ss_pred HHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHHhCccccccHH-HHHHHHHHHHHHCC
Confidence 5 33 22221 112222223344433355566666666666664 44444455555554
No 434
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=76.39 E-value=44 Score=27.93 Aligned_cols=54 Identities=11% Similarity=-0.042 Sum_probs=40.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCc-----HHHHH--HHHHHHHHcCcHHHHHHHHHH
Q 024712 70 VSIAAMDCQCLDVAKDCIKVLQKQFPES-----KRVGR--LEGILLEAKGLWAEAEKAYSS 123 (263)
Q Consensus 70 la~~~~~~~~~~~A~~~~~~~~~~~p~~-----~~~~~--~~a~~~~~~~~~~~A~~~~~~ 123 (263)
.+..++..++|..|..+|..+....+.. ...+. ..|..+...-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 5567889999999999999999886421 12222 344555677899999999986
No 435
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=76.00 E-value=6.7 Score=24.14 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=11.2
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHH
Q 024712 103 LEGILLEAKGLWAEAEKAYSSLL 125 (263)
Q Consensus 103 ~~a~~~~~~~~~~~A~~~~~~~~ 125 (263)
..|.-+-..|++.+|+.+|++++
T Consensus 11 ~~AVe~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 11 INAVKAEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 33444445555555555554443
No 436
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.80 E-value=34 Score=31.55 Aligned_cols=105 Identities=13% Similarity=0.029 Sum_probs=66.1
Q ss_pred HHHHHHHcCcHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHh-cCCCHHHHHHHHHHHHhccc
Q 024712 104 EGILLEAKGLWAEAEKAYSSLLEDNPLD-PVLHKRRVAIAKAQGNFPTAIEWLNKYLET-FMADHDAWRELAEIYVSLQM 181 (263)
Q Consensus 104 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~ 181 (263)
.-..+.+..-|+-|+.+.+.-- .+++. ...+...|..++..|++++|...|-+++.. +|.. + ..-+....+
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~~-~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~--V----i~kfLdaq~ 412 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQH-LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSE--V----IKKFLDAQR 412 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHH--H----HHHhcCHHH
Confidence 3445667778888887765532 23333 357888999999999999999999998853 2221 1 122234444
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCC
Q 024712 182 YKQAAFCYEELILSQPTVPLYHLAYADVLYTLGG 215 (263)
Q Consensus 182 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 215 (263)
..+-..+++...+..-.+..--..|-.||.++++
T Consensus 413 IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd 446 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKD 446 (933)
T ss_pred HHHHHHHHHHHHHcccccchhHHHHHHHHHHhcc
Confidence 5555555555555544444444456677888887
No 437
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=75.43 E-value=14 Score=27.34 Aligned_cols=44 Identities=27% Similarity=0.208 Sum_probs=20.2
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhccCC
Q 024712 187 FCYEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDLTG 234 (263)
Q Consensus 187 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~~~ 234 (263)
+..++.+...| ++..+.+++.++...|+ .++|.....++..+.|
T Consensus 132 ~~a~~~l~~~P-~~~~~~~~a~~l~~~G~---~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 132 EWAERLLRRRP-DPNVYQRYALALALLGD---PEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC
Confidence 33334444444 24444444445555555 4555555544444444
No 438
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=74.56 E-value=43 Score=26.85 Aligned_cols=159 Identities=13% Similarity=0.066 Sum_probs=96.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHcCcHHHHHHHHH---HHHhcC--CCCHHHH
Q 024712 69 QVSIAAMDCQCLDVAKDCIKVLQKQFP--------ESKRVGRLEGILLEAKGLWAEAEKAYS---SLLEDN--PLDPVLH 135 (263)
Q Consensus 69 ~la~~~~~~~~~~~A~~~~~~~~~~~p--------~~~~~~~~~a~~~~~~~~~~~A~~~~~---~~~~~~--p~~~~~~ 135 (263)
.++.-....+++++|+..|.+++.... ........++.+|...|++..--+... .++..- |....+.
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 356667788999999999999987632 123456678999999998755433332 222211 2222222
Q ss_pred HHHHHH-HHHcCChhHHHHHHHHHHHhcCCCH------HHHHHHHHHHHhcccHHHHHHHHHHHHhh----C--CCCHHH
Q 024712 136 KRRVAI-AKAQGNFPTAIEWLNKYLETFMADH------DAWRELAEIYVSLQMYKQAAFCYEELILS----Q--PTVPLY 202 (263)
Q Consensus 136 ~~l~~~-~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~----~--p~~~~~ 202 (263)
..+... -.....++.-+..+...++...... ..-..+..+++..|.|.+|+......+.- + |+-..+
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 222211 1223455666666666665433222 22345778889999999999988776632 2 333456
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 024712 203 HLAYADVLYTLGGVDNILLAKKYYASTI 230 (263)
Q Consensus 203 ~~~la~~~~~~g~~~~~~~A~~~~~~al 230 (263)
+..-..+|....+ ..++...+..+-
T Consensus 168 hllESKvyh~irn---v~KskaSLTaAr 192 (421)
T COG5159 168 HLLESKVYHEIRN---VSKSKASLTAAR 192 (421)
T ss_pred hhhhHHHHHHHHh---hhhhhhHHHHHH
Confidence 6666788888888 666666665543
No 439
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=74.22 E-value=6.5 Score=30.15 Aligned_cols=97 Identities=18% Similarity=0.083 Sum_probs=54.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCCHH------------HHHHHHHHHHhcccH-HHH-HHHHHHHHhh--CCCCHH-
Q 024712 139 VAIAKAQGNFPTAIEWLNKYLETFMADHD------------AWRELAEIYVSLQMY-KQA-AFCYEELILS--QPTVPL- 201 (263)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~------------~~~~la~~~~~~g~~-~~A-~~~~~~al~~--~p~~~~- 201 (263)
..-.+..|+++.|+.+...+++.+-.-|+ -....+......|.. +-. ...+..+... -|+...
T Consensus 90 mvW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrA 169 (230)
T PHA02537 90 MVWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRA 169 (230)
T ss_pred eeeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHH
Confidence 34456789999999999999987522221 122233334444542 111 1122222211 133333
Q ss_pred -HHHHHHHHHHhc------CCCCcHHHHHHHHHHhhccCCC
Q 024712 202 -YHLAYADVLYTL------GGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 202 -~~~~la~~~~~~------g~~~~~~~A~~~~~~al~~~~~ 235 (263)
.+...|..+... ++.+....|..+++++++++|.
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 455566666432 2223388999999999999986
No 440
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=74.08 E-value=35 Score=30.28 Aligned_cols=80 Identities=14% Similarity=0.089 Sum_probs=59.1
Q ss_pred HHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHH
Q 024712 109 EAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC 188 (263)
Q Consensus 109 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 188 (263)
.+....+.+....+.-+.-...........+..+-..|..++|-.+|++.+..+|+ ..++..+.-+...|-...|...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 96 (578)
T PRK15490 19 KQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLI 96 (578)
T ss_pred HHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHH
Confidence 34455666666666666544445556666777778888888899999999888887 6677888888888888888777
Q ss_pred HH
Q 024712 189 YE 190 (263)
Q Consensus 189 ~~ 190 (263)
++
T Consensus 97 ~~ 98 (578)
T PRK15490 97 LK 98 (578)
T ss_pred HH
Confidence 76
No 441
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=71.35 E-value=25 Score=31.97 Aligned_cols=95 Identities=20% Similarity=0.106 Sum_probs=44.5
Q ss_pred HHHHHcCcHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHH--cCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 024712 106 ILLEAKGLWAEAEKAYSSLLEDNPLD----PVLHKRRVAIAKA--QGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL 179 (263)
Q Consensus 106 ~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~--~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 179 (263)
..+++.+++.++..-|..++.+-|.+ .....+.+.++.. .|++..++.-..-++...|....++...+.+|...
T Consensus 61 n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al 140 (748)
T KOG4151|consen 61 NKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEAL 140 (748)
T ss_pred hHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHH
Confidence 34444444444444444444444422 1222333333332 24555555555555555555555555555555555
Q ss_pred ccHHHHHHHHHHHHhhCCCCH
Q 024712 180 QMYKQAAFCYEELILSQPTVP 200 (263)
Q Consensus 180 g~~~~A~~~~~~al~~~p~~~ 200 (263)
+..+-|++...-.....|.++
T Consensus 141 ~k~d~a~rdl~i~~~~~p~~~ 161 (748)
T KOG4151|consen 141 NKLDLAVRDLRIVEKMDPSNV 161 (748)
T ss_pred HHHHHHHHHHHHHhcCCCCcc
Confidence 555555555444445555553
No 442
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=71.09 E-value=56 Score=26.69 Aligned_cols=100 Identities=14% Similarity=0.024 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH---H
Q 024712 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---V 133 (263)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~ 133 (263)
...++..++..|.+.||-+.|.+.+.+..+..- +-......+|.+|....-..+.++..+.+++...+-. .
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNR 182 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNR 182 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhh
Confidence 445555666666666666666666665555432 1122223344444444333444444444444322110 1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhc
Q 024712 134 LHKRRVAIAKAQGNFPTAIEWLNKYLETF 162 (263)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 162 (263)
.-...|...+...++.+|-..|-..+..+
T Consensus 183 lKvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 183 LKVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 11223444455556666666666555443
No 443
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=70.88 E-value=46 Score=29.57 Aligned_cols=58 Identities=14% Similarity=-0.039 Sum_probs=32.7
Q ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 024712 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLN 156 (263)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 156 (263)
+....+..+..+-..+..+.|-.+|++.+..+|+ ..+...+.-+...|-...|...++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 41 TSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred hHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 3334444555555556666666666666666665 344455555556665555555554
No 444
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=70.44 E-value=41 Score=24.92 Aligned_cols=63 Identities=19% Similarity=0.202 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhcCCCCHH--------HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHh
Q 024712 115 AEAEKAYSSLLEDNPLDPV--------LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVS 178 (263)
Q Consensus 115 ~~A~~~~~~~~~~~p~~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~ 178 (263)
+.|+..++.+-+..|.... +-.....++++.|.+++|.+.+++... +|++......|..+-..
T Consensus 86 ESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~ 156 (200)
T cd00280 86 ESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHc
Confidence 4566666655554433211 122334556666777777777776666 55555544444444333
No 445
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=70.19 E-value=58 Score=26.56 Aligned_cols=97 Identities=11% Similarity=0.064 Sum_probs=46.3
Q ss_pred HHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHH
Q 024712 109 EAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFC 188 (263)
Q Consensus 109 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 188 (263)
...|+...|..+-.+ +.. .+...|......+...++|++-..+... ..+|-.|.-...++...|+..+|..+
T Consensus 188 i~~~~~k~A~kl~k~-Fkv--~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~~~eA~~y 259 (319)
T PF04840_consen 188 IEMGQEKQAEKLKKE-FKV--PDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGNKKEASKY 259 (319)
T ss_pred HHCCCHHHHHHHHHH-cCC--cHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCCHHHHHHH
Confidence 344555555444222 222 2334455555666666666654443221 12233344445555566666666666
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 024712 189 YEELILSQPTVPLYHLAYADVLYTLGGVDNILLAKKY 225 (263)
Q Consensus 189 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~ 225 (263)
..+ + |. ......|...|+ +.+|.+.
T Consensus 260 I~k---~-~~-----~~rv~~y~~~~~---~~~A~~~ 284 (319)
T PF04840_consen 260 IPK---I-PD-----EERVEMYLKCGD---YKEAAQE 284 (319)
T ss_pred HHh---C-Ch-----HHHHHHHHHCCC---HHHHHHH
Confidence 555 1 11 233445555566 5555443
No 446
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=70.02 E-value=56 Score=26.26 Aligned_cols=100 Identities=11% Similarity=0.025 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH---H
Q 024712 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFP------ESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP---V 133 (263)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~---~ 133 (263)
...++.++|..|.+.++.+.+.+.+.+.+...- +-......+|.+|....-.++.++....+++...+-. .
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 445566666666666666666666655555332 1111222344444444444555555555555432211 1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhc
Q 024712 134 LHKRRVAIAKAQGNFPTAIEWLNKYLETF 162 (263)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 162 (263)
.-...|...+...++.+|-..+-..+..+
T Consensus 194 yK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 194 YKVYKGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 11223444455556666666666555443
No 447
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=69.69 E-value=13 Score=18.65 Aligned_cols=16 Identities=31% Similarity=0.702 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHhhCC
Q 024712 182 YKQAAFCYEELILSQP 197 (263)
Q Consensus 182 ~~~A~~~~~~al~~~p 197 (263)
++.|..+|++.+...|
T Consensus 3 ~dRAR~IyeR~v~~hp 18 (32)
T PF02184_consen 3 FDRARSIYERFVLVHP 18 (32)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 3444444444444443
No 448
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=68.85 E-value=72 Score=27.10 Aligned_cols=96 Identities=16% Similarity=0.045 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCH------HHHHHHHHHHHhccc--------------HHHHHHHHHHHH
Q 024712 134 LHKRRVAIAKAQGNFPTAIEWLNKYLETFMADH------DAWRELAEIYVSLQM--------------YKQAAFCYEELI 193 (263)
Q Consensus 134 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~--------------~~~A~~~~~~al 193 (263)
....+|.+.+..|+|+-|...|+-+....-++. .+....|.+.+..+. ++.|...|.++-
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~ 289 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA 289 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence 456688888888888888888887776554332 122233444444332 233444444321
Q ss_pred ----hhCCCCHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712 194 ----LSQPTVPLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (263)
Q Consensus 194 ----~~~p~~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~ 232 (263)
........+....+.++...|. +.+|...+-+....
T Consensus 290 ~~~~~~~~~a~R~~ll~~ell~~~~~---~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 290 LPRCSLPYYALRCALLLAELLKSRGG---YWEAADQLIRWTSE 329 (414)
T ss_pred ccccccccchHHHHHHHHHHHHhcCc---cHHHHHHHHHHHHH
Confidence 1111223455556667767777 66666655555443
No 449
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=67.84 E-value=56 Score=25.47 Aligned_cols=159 Identities=11% Similarity=0.050 Sum_probs=84.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHh-CC--CcHHHHHHHHHHHHHc-CcHHHHHHHHHHHHhcC--CCCHHHHHHHHHH
Q 024712 68 EQVSIAAMDCQCLDVAKDCIKVLQKQ-FP--ESKRVGRLEGILLEAK-GLWAEAEKAYSSLLEDN--PLDPVLHKRRVAI 141 (263)
Q Consensus 68 ~~la~~~~~~~~~~~A~~~~~~~~~~-~p--~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~ 141 (263)
..+|...-+.++|++.+...+++++. .| -+..-...+..+|-.. |....+...+..+-... ..+. -...+..-
T Consensus 5 v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~-~~~~~~~~ 83 (244)
T smart00101 5 VYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNE-DHVASIKE 83 (244)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCch-HHHHHHHH
Confidence 34677777889999999999999886 44 3555566677766543 66677777766533321 1111 11111111
Q ss_pred HHHcCChhHHHHHHHHHHHh-----cCC--CHH----HHHHHHHHHHhc-----c-----cHHHHHHHHHHHHh-----h
Q 024712 142 AKAQGNFPTAIEWLNKYLET-----FMA--DHD----AWRELAEIYVSL-----Q-----MYKQAAFCYEELIL-----S 195 (263)
Q Consensus 142 ~~~~g~~~~A~~~~~~~l~~-----~p~--~~~----~~~~la~~~~~~-----g-----~~~~A~~~~~~al~-----~ 195 (263)
|.. .-.++-...+..++.+ -|. ++. .+-..|..|... | -.+.|...|+.|++ +
T Consensus 84 yr~-kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L 162 (244)
T smart00101 84 YRG-KIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAEL 162 (244)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 111 1111222223333321 122 211 122334444222 2 24578888988875 4
Q ss_pred CCCCHH---HHHHHHHHHHh-cCCCCcHHHHHHHHHHhhc
Q 024712 196 QPTVPL---YHLAYADVLYT-LGGVDNILLAKKYYASTID 231 (263)
Q Consensus 196 ~p~~~~---~~~~la~~~~~-~g~~~~~~~A~~~~~~al~ 231 (263)
.|.+|. ...+.+..|+. .++ .++|....++++.
T Consensus 163 ~pt~PirLgLaLN~SVF~yEI~~~---~~~A~~lAk~afd 199 (244)
T smart00101 163 PPTHPIRLGLALNFSVFYYEILNS---PDRACNLAKQAFD 199 (244)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH
Confidence 566664 34555555555 477 8888766655543
No 450
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=67.55 E-value=12 Score=23.10 Aligned_cols=14 Identities=21% Similarity=0.171 Sum_probs=6.8
Q ss_pred ccHHHHHHHHHHHH
Q 024712 180 QMYKQAAFCYEELI 193 (263)
Q Consensus 180 g~~~~A~~~~~~al 193 (263)
|+|++|..+|..++
T Consensus 20 ~~y~eA~~~Y~~~i 33 (75)
T cd02677 20 GDYEAAFEFYRAGV 33 (75)
T ss_pred hhHHHHHHHHHHHH
Confidence 44555554444444
No 451
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=67.19 E-value=14 Score=23.07 Aligned_cols=14 Identities=29% Similarity=0.195 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHhh
Q 024712 182 YKQAAFCYEELILS 195 (263)
Q Consensus 182 ~~~A~~~~~~al~~ 195 (263)
|+.|..+..+++..
T Consensus 5 ~~~A~~~I~kaL~~ 18 (79)
T cd02679 5 YKQAFEEISKALRA 18 (79)
T ss_pred HHHHHHHHHHHhhh
Confidence 44444444444443
No 452
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.66 E-value=34 Score=22.46 Aligned_cols=37 Identities=14% Similarity=0.037 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHH
Q 024712 132 PVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDA 168 (263)
Q Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 168 (263)
+..+..+|.+|...|+.+.+...|+.--.++|.+...
T Consensus 72 PG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~f 108 (121)
T COG4259 72 PGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVF 108 (121)
T ss_pred CcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhH
Confidence 4566677777777787777777777777777776544
No 453
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=66.53 E-value=83 Score=26.92 Aligned_cols=85 Identities=22% Similarity=0.246 Sum_probs=49.9
Q ss_pred HcCcHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHH--hcCCCHHHHHHHHHHHHhcccHH
Q 024712 110 AKGLWAEAEKAYSSLLEDNPLD----PVLHKRRVAIAKAQGNFPTAIEWLNKYLE--TFMADHDAWRELAEIYVSLQMYK 183 (263)
Q Consensus 110 ~~~~~~~A~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~ 183 (263)
...+.+.+..++-+.-.. |.. +.....+...+...|..++++..+..-+. ++|++..+ ..|-..++..|+|.
T Consensus 78 ~~~~~d~~~~~L~k~R~s-~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~-n~Lmd~fl~~~~~~ 155 (429)
T PF10037_consen 78 SKDDLDEVEDVLYKFRHS-PNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF-NLLMDHFLKKGNYK 155 (429)
T ss_pred CHhHHHHHHHHHHHHHcC-cccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH-HHHHHHHhhcccHH
Confidence 334455555555554332 211 12234566677777777777777766554 35655443 55566777778888
Q ss_pred HHHHHHHHHHhhC
Q 024712 184 QAAFCYEELILSQ 196 (263)
Q Consensus 184 ~A~~~~~~al~~~ 196 (263)
.|.++....+...
T Consensus 156 ~A~~V~~~~~lQe 168 (429)
T PF10037_consen 156 SAAKVATEMMLQE 168 (429)
T ss_pred HHHHHHHHHHHhh
Confidence 8877777666443
No 454
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=66.40 E-value=52 Score=24.51 Aligned_cols=160 Identities=11% Similarity=-0.033 Sum_probs=96.8
Q ss_pred ccHHHHHHHHHHhccCChhHHHHHHHHHhcCcccccccCcchHHHHHHHHHHHH-----HcCChHHHHHHHHHHHHhCCC
Q 024712 22 GGAWEYLCLVKKLKVRRPDKVLRHGLSILNDPKKRSALGPDVWTLYEQVSIAAM-----DCQCLDVAKDCIKVLQKQFPE 96 (263)
Q Consensus 22 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-----~~~~~~~A~~~~~~~~~~~p~ 96 (263)
.++-..|..+.+.-..+.+.+......-... ... +..-+..|..++ ..+++..|++.+..+.+ .+
T Consensus 34 Pe~C~lLgdYlEgi~knF~~A~kv~K~nCde----n~y----~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n 103 (248)
T KOG4014|consen 34 PESCQLLGDYLEGIQKNFQAAVKVFKKNCDE----NSY----PKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--AN 103 (248)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcccc----cCC----cHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cC
Confidence 4555566666666666677766666554444 111 111222333222 34688999999998887 45
Q ss_pred cHHHHHHHHHHHHHc-----C--cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc------------------------
Q 024712 97 SKRVGRLEGILLEAK-----G--LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQ------------------------ 145 (263)
Q Consensus 97 ~~~~~~~~a~~~~~~-----~--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~------------------------ 145 (263)
++.+...+|.++..- + +..+|..++.++-.++ +..+-+.|...++..
T Consensus 104 ~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~ 181 (248)
T KOG4014|consen 104 IPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLS 181 (248)
T ss_pred CHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhh
Confidence 677777788777543 3 3678999999998764 334444444444432
Q ss_pred CChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc----ccHHHHHHHHHHHHhh
Q 024712 146 GNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL----QMYKQAAFCYEELILS 195 (263)
Q Consensus 146 g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~ 195 (263)
.+.+.|.++.-++.++ ..+.+.-++...|..- .+-++|..+-.++.++
T Consensus 182 kDMdka~qfa~kACel--~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 182 KDMDKALQFAIKACEL--DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred HhHHHHHHHHHHHHhc--CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 3456677776666655 4566666777666432 3566777766666654
No 455
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=66.00 E-value=14 Score=30.75 Aligned_cols=54 Identities=19% Similarity=0.147 Sum_probs=38.7
Q ss_pred ccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcCCCC---------cHHHHHHHHHHhhccCCC
Q 024712 180 QMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLGGVD---------NILLAKKYYASTIDLTGG 235 (263)
Q Consensus 180 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~---------~~~~A~~~~~~al~~~~~ 235 (263)
.-...|+.++++|.. ..+|..|..+|.++..+|+.- -|.+|.+.+.+|-....+
T Consensus 332 ~l~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~at~G 394 (404)
T PF12753_consen 332 ELIKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKATNG 394 (404)
T ss_dssp HHHHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhcccc
Confidence 457888888888875 556778888888888888721 278899999988776544
No 456
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=65.74 E-value=14 Score=22.78 Aligned_cols=19 Identities=16% Similarity=-0.046 Sum_probs=13.2
Q ss_pred HhcccHHHHHHHHHHHHhh
Q 024712 177 VSLQMYKQAAFCYEELILS 195 (263)
Q Consensus 177 ~~~g~~~~A~~~~~~al~~ 195 (263)
-..|+|++|+.+|..+++.
T Consensus 17 D~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 17 DEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred hHhhhHHHHHHHHHHHHHH
Confidence 3567777777777777654
No 457
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.34 E-value=99 Score=30.03 Aligned_cols=115 Identities=17% Similarity=0.080 Sum_probs=76.1
Q ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC-------------------------C----HHHHHHHHHHHHHcCC
Q 024712 97 SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL-------------------------D----PVLHKRRVAIAKAQGN 147 (263)
Q Consensus 97 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-------------------------~----~~~~~~l~~~~~~~g~ 147 (263)
.+...+++|.+|...|+.-+|+.+|.++.+--.. . ...+....+++..-+.
T Consensus 919 k~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~ 998 (1480)
T KOG4521|consen 919 KPVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNH 998 (1480)
T ss_pred HHHHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhcc
Confidence 4556678888899999999999999888653111 1 1233344455556667
Q ss_pred hhHHHHHHHHHHHhcCCC----HHHHHHHHHHHHhcccHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHhcCC
Q 024712 148 FPTAIEWLNKYLETFMAD----HDAWRELAEIYVSLQMYKQAAFCYEELILSQPTVP---LYHLAYADVLYTLGG 215 (263)
Q Consensus 148 ~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~ 215 (263)
.+.+++..-+|++.-|.+ +.....+-+....+|.+-+|... +-.+|+.. .....+-.+++..|.
T Consensus 999 ~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~a----i~~npdserrrdcLRqlvivLfecg~ 1069 (1480)
T KOG4521|consen 999 AEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKA----ILRNPDSERRRDCLRQLVIVLFECGE 1069 (1480)
T ss_pred HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHH----HHcCCcHHHHHHHHHHHHHHHHhccc
Confidence 777788878888764443 34455566667788888888654 44456542 356677778888887
No 458
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=65.33 E-value=71 Score=25.68 Aligned_cols=126 Identities=13% Similarity=0.004 Sum_probs=77.8
Q ss_pred HHHHHHHHHcCcHHHHHHHHHHHHhcCCC--------CHHHHHHHHHHHHHcCChhHHHHHH---HHHHHhc--CCCHHH
Q 024712 102 RLEGILLEAKGLWAEAEKAYSSLLEDNPL--------DPVLHKRRVAIAKAQGNFPTAIEWL---NKYLETF--MADHDA 168 (263)
Q Consensus 102 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--------~~~~~~~l~~~~~~~g~~~~A~~~~---~~~l~~~--p~~~~~ 168 (263)
..+++-....+++++|+..|.+++..... .......++.+|...|++..--+.. ..+.... |....+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 45667777889999999999999986211 1246778999999999876543333 3333322 222222
Q ss_pred HHHHHHH-HHhcccHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 024712 169 WRELAEI-YVSLQMYKQAAFCYEELILSQPTVPL------YHLAYADVLYTLGGVDNILLAKKYYASTI 230 (263)
Q Consensus 169 ~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~~~~A~~~~~~al 230 (263)
...+..- -.....++.-+.++..+++....... .-..+..+++..|+ |.+|+....-.+
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~---YsdalalIn~ll 152 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGK---YSDALALINPLL 152 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHH
Confidence 2222222 22345566666666666654433322 33457788999999 999987765544
No 459
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=64.60 E-value=31 Score=21.28 Aligned_cols=28 Identities=14% Similarity=-0.041 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 024712 65 TLYEQVSIAAMDCQCLDVAKDCIKVLQK 92 (263)
Q Consensus 65 ~~~~~la~~~~~~~~~~~A~~~~~~~~~ 92 (263)
..+...|.-+-..|++.+|+.+|+.+++
T Consensus 7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 7 RKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3445566666677777777766665544
No 460
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=63.79 E-value=23 Score=21.14 Aligned_cols=18 Identities=28% Similarity=0.235 Sum_probs=10.0
Q ss_pred HHhcccHHHHHHHHHHHH
Q 024712 176 YVSLQMYKQAAFCYEELI 193 (263)
Q Consensus 176 ~~~~g~~~~A~~~~~~al 193 (263)
+-..|++++|+.+|.+++
T Consensus 15 ~D~~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 15 ADEAGNYEEALELYKEAI 32 (69)
T ss_dssp HHHTTSHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 334556666666655554
No 461
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.49 E-value=1.3e+02 Score=28.51 Aligned_cols=112 Identities=16% Similarity=0.082 Sum_probs=69.3
Q ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCh--hHHHHHHHHHHHhcCCCHHH------
Q 024712 101 GRLEGILLEAKGLWAEAEKAYSSLLED----NPLDPVLHKRRVAIAKAQGNF--PTAIEWLNKYLETFMADHDA------ 168 (263)
Q Consensus 101 ~~~~a~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~l~~~p~~~~~------ 168 (263)
+..++.+|...|+.++|++.+.+.... ++.....+..+...+...+.. +-..++..-.+..+|....-
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 456888899999999999999998873 333344555555555566655 55555555555555543210
Q ss_pred -------HHHHHHHHHhcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHh
Q 024712 169 -------WRELAEIYVSLQMYKQAAFCYEELILSQPT-VPLYHLAYADVLYT 212 (263)
Q Consensus 169 -------~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~ 212 (263)
-.....-|......+-++.+++.++..+.. +...+..++..|..
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 011223345667788889999998877665 34445555555443
No 462
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=63.01 E-value=69 Score=24.80 Aligned_cols=150 Identities=14% Similarity=0.095 Sum_probs=76.0
Q ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHH-HcCChhHHHHHHHHHHHhcCCCH-HHHHHHHHHHH
Q 024712 101 GRLEGILLEAKGLWAEAEKAYSSLLEDNPLDP-VLHKRRVAIAK-AQGNFPTAIEWLNKYLETFMADH-DAWRELAEIYV 177 (263)
Q Consensus 101 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~-~~g~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~ 177 (263)
+..+|.+..+.|+|++.+.++++++..+|.-. .-...+..+|- ..|....+...+........... .....+..-|.
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk 83 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYK 83 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHH
Confidence 45789999999999999999999999877543 33334444442 22444445555554444333321 11111111111
Q ss_pred h------cccHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHhcCCC-------CcHHHHHHHHHHhhccCCC---cc
Q 024712 178 S------LQMYKQAAFCYEELILSQPTVPL----YHLAYADVLYTLGGV-------DNILLAKKYYASTIDLTGG---KN 237 (263)
Q Consensus 178 ~------~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~-------~~~~~A~~~~~~al~~~~~---~~ 237 (263)
. ..-..+.+......+-....++. .+...|+.|...-.. .-.+.|...|++|+++... +.
T Consensus 84 ~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~ 163 (236)
T PF00244_consen 84 KKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPT 163 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCC
Confidence 1 11223444444443332222322 233345555543221 1146788888888764211 24
Q ss_pred hhHHHhHHHHHhh
Q 024712 238 TKALFGICLVMFV 250 (263)
Q Consensus 238 ~~~~~~l~~~~~~ 250 (263)
-....||++.+..
T Consensus 164 ~p~rLgl~LN~sv 176 (236)
T PF00244_consen 164 HPLRLGLALNYSV 176 (236)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 4556677776554
No 463
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=62.65 E-value=19 Score=21.54 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=10.6
Q ss_pred HHHHHcCcHHHHHHHHHHHHh
Q 024712 106 ILLEAKGLWAEAEKAYSSLLE 126 (263)
Q Consensus 106 ~~~~~~~~~~~A~~~~~~~~~ 126 (263)
.-.-..|++++|+.+|.+++.
T Consensus 13 v~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 13 VEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 333445555555555555543
No 464
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=62.40 E-value=19 Score=18.14 Aligned_cols=15 Identities=20% Similarity=0.264 Sum_probs=9.2
Q ss_pred cHHHHHHHHHHhhcc
Q 024712 218 NILLAKKYYASTIDL 232 (263)
Q Consensus 218 ~~~~A~~~~~~al~~ 232 (263)
+.++|..+|+++-+.
T Consensus 23 d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 23 DYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHc
Confidence 466666666666543
No 465
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.29 E-value=42 Score=22.04 Aligned_cols=36 Identities=14% Similarity=0.027 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH
Q 024712 63 VWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESK 98 (263)
Q Consensus 63 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 98 (263)
.+..+.+++..|...|+.+.|.+-|+.--..+|.+.
T Consensus 71 pPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~ 106 (121)
T COG4259 71 PPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESG 106 (121)
T ss_pred CCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccch
Confidence 344455556666666666666666655555555543
No 466
>TIGR02498 type_III_ssaH type III secretion system protein, SsaH family. This family describes a small protein, always smaller than 100 amino acids, encoded in pathogenicity islands for bacterial type III secretion systems in various strains of Yersinia, Salmonella, and enteropathogenic E. coli, as well as Chromobacterium violaceum and Citrobacter rodentium. Although strictly associated with type III secretion systems, this protein seems not yet to have been characterized as part of the apparatus or as an effector protein.
Probab=62.26 E-value=35 Score=21.13 Aligned_cols=58 Identities=22% Similarity=0.200 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHH
Q 024712 66 LYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSS 123 (263)
Q Consensus 66 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 123 (263)
.....+.+....|-.++|..++.-.-+.-|+........+.+++..|+..+|...+..
T Consensus 8 L~VEaalAavNH~L~~ea~ailnalP~li~D~~~r~vcea~llfGL~~~~~A~~~L~~ 65 (79)
T TIGR02498 8 LVVEAALAAVNHSLPKEAHSILNALPQIIPDKKDRLVCEAILLFGLNHKNDAVKLLEN 65 (79)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHhcccccCCHhHHHHHHHHHHHhcCcHHHHHHHHhc
Confidence 3444566667778888898888888777787777777888899999999888877655
No 467
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=61.56 E-value=50 Score=22.69 Aligned_cols=27 Identities=11% Similarity=-0.197 Sum_probs=19.1
Q ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHhc
Q 024712 101 GRLEGILLEAKGLWAEAEKAYSSLLED 127 (263)
Q Consensus 101 ~~~~a~~~~~~~~~~~A~~~~~~~~~~ 127 (263)
+..+|+..++.+++-.++-.|+.++..
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~ 30 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSL 30 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHH
Confidence 345677777777777777777777654
No 468
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=61.17 E-value=45 Score=22.07 Aligned_cols=43 Identities=14% Similarity=-0.037 Sum_probs=20.8
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHhcC
Q 024712 172 LAEIYVSLQMYKQAAFCYEELILSQPTVPLYHLAYADVLYTLG 214 (263)
Q Consensus 172 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 214 (263)
-|.+-+..|++..|.+...++-+..+..+..+..-+++-...|
T Consensus 65 ~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 65 RGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 3444555566666666665555443333333333344444433
No 469
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=60.90 E-value=27 Score=23.86 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=11.7
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhcCC
Q 024712 138 RVAIAKAQGNFPTAIEWLNKYLETFMA 164 (263)
Q Consensus 138 l~~~~~~~g~~~~A~~~~~~~l~~~p~ 164 (263)
+|..+...|++++|..+|-+++...|.
T Consensus 69 lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 69 LGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 344444444444444444444444443
No 470
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=60.72 E-value=26 Score=23.89 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=18.4
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhhCCCC
Q 024712 171 ELAEIYVSLQMYKQAAFCYEELILSQPTV 199 (263)
Q Consensus 171 ~la~~~~~~g~~~~A~~~~~~al~~~p~~ 199 (263)
.+|..+...|++++|..+|-.|+...|..
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 45666666677777777777776666653
No 471
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=59.72 E-value=26 Score=21.65 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=11.5
Q ss_pred HHHHHHcCcHHHHHHHHHHHHh
Q 024712 105 GILLEAKGLWAEAEKAYSSLLE 126 (263)
Q Consensus 105 a~~~~~~~~~~~A~~~~~~~~~ 126 (263)
|.-.-..|+|++|+.+|..+++
T Consensus 13 Ave~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 13 AVQRDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 3334444555555555555554
No 472
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=59.51 E-value=3 Score=36.54 Aligned_cols=98 Identities=17% Similarity=0.035 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCC-CcHHHHHHHHHHHHHcCcHHHHHHHHHHHH--hcCCC-CHHH
Q 024712 61 PDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQK--QFP-ESKRVGRLEGILLEAKGLWAEAEKAYSSLL--EDNPL-DPVL 134 (263)
Q Consensus 61 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~--~~~p~-~~~~ 134 (263)
+.........+..++..|++..|..++..+.. ..| .........+.+....|+++.|+..+...- .+.+. ....
T Consensus 21 ~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~ 100 (536)
T PF04348_consen 21 EQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARY 100 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHH
Confidence 44555566678888899999999999988772 233 344566777888899999999999887421 11111 1235
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHH
Q 024712 135 HKRRVAIAKAQGNFPTAIEWLNKY 158 (263)
Q Consensus 135 ~~~l~~~~~~~g~~~~A~~~~~~~ 158 (263)
+...+.++...|++-+|...+-..
T Consensus 101 ~~l~A~a~~~~~~~l~Aa~~~i~l 124 (536)
T PF04348_consen 101 HQLRAQAYEQQGDPLAAARERIAL 124 (536)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Confidence 556777888888877776654443
No 473
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=59.30 E-value=49 Score=21.89 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=14.2
Q ss_pred HHHHHHHHcCcHHHHHHHHHHHHhc
Q 024712 103 LEGILLEAKGLWAEAEKAYSSLLED 127 (263)
Q Consensus 103 ~~a~~~~~~~~~~~A~~~~~~~~~~ 127 (263)
..|......|++..|.+...++-+.
T Consensus 64 ~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 64 SRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3455555556666666666666544
No 474
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=58.63 E-value=1e+02 Score=25.41 Aligned_cols=159 Identities=17% Similarity=0.112 Sum_probs=95.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHh--CCC--------cHHHHHHHHHHHHHcCcHHHHHHHHHHH---HhcCCCC--HHH
Q 024712 70 VSIAAMDCQCLDVAKDCIKVLQKQ--FPE--------SKRVGRLEGILLEAKGLWAEAEKAYSSL---LEDNPLD--PVL 134 (263)
Q Consensus 70 la~~~~~~~~~~~A~~~~~~~~~~--~p~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~~---~~~~p~~--~~~ 134 (263)
.+.......+.++++.++..++.. .|. .......++..+...|+..+-....... +..-+.. ...
T Consensus 10 ~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKl 89 (411)
T KOG1463|consen 10 RAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKL 89 (411)
T ss_pred HHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 455556667778888888888874 221 1234567899999999887654444333 3222221 112
Q ss_pred HHHHHHHH-HHcCChhHHHHHHHHHHHhcCCCHH------HHHHHHHHHHhcccHHHHHHHHHHHHh----hCCCC--HH
Q 024712 135 HKRRVAIA-KAQGNFPTAIEWLNKYLETFMADHD------AWRELAEIYVSLQMYKQAAFCYEELIL----SQPTV--PL 201 (263)
Q Consensus 135 ~~~l~~~~-~~~g~~~~A~~~~~~~l~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~----~~p~~--~~ 201 (263)
...+.... ..-+.++.-+..+..+++....... .-..+..+|+..++|.+|+......+. ++... ..
T Consensus 90 vR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLve 169 (411)
T KOG1463|consen 90 VRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVE 169 (411)
T ss_pred HHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceee
Confidence 22222222 2234455566667776665433322 224578889999999999988877663 33222 34
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHhhc
Q 024712 202 YHLAYADVLYTLGGVDNILLAKKYYASTID 231 (263)
Q Consensus 202 ~~~~la~~~~~~g~~~~~~~A~~~~~~al~ 231 (263)
++..=..+|+...+ ..+|...+..|-.
T Consensus 170 v~llESK~y~~l~N---l~KakasLTsART 196 (411)
T KOG1463|consen 170 VHLLESKAYHALRN---LPKAKASLTSART 196 (411)
T ss_pred ehhhhhHHHHHHhc---chhHHHHHHHHHH
Confidence 55556778888888 7777777766543
No 475
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=58.57 E-value=21 Score=17.48 Aligned_cols=30 Identities=13% Similarity=0.160 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhc-CCCCcHHHHHHHHHHhhc
Q 024712 202 YHLAYADVLYTL-GGVDNILLAKKYYASTID 231 (263)
Q Consensus 202 ~~~~la~~~~~~-g~~~~~~~A~~~~~~al~ 231 (263)
+...+|.+|..- |-..+..+|..+|+++-+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 445555555432 212236666666666544
No 476
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=58.51 E-value=93 Score=25.65 Aligned_cols=49 Identities=12% Similarity=0.041 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCC
Q 024712 82 VAKDCIKVLQKQFPE---SKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPL 130 (263)
Q Consensus 82 ~A~~~~~~~~~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~ 130 (263)
+...++..++..-|+ .+..|..+|.+....|.++..+.+|++|+.....
T Consensus 121 ei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAq 172 (353)
T PF15297_consen 121 EILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQ 172 (353)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Confidence 555666666666663 4556677777777777777777777777765544
No 477
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=57.96 E-value=31 Score=21.30 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=11.3
Q ss_pred HHhcccHHHHHHHHHHHHh
Q 024712 176 YVSLQMYKQAAFCYEELIL 194 (263)
Q Consensus 176 ~~~~g~~~~A~~~~~~al~ 194 (263)
+-..|+|++|+.+|..+++
T Consensus 16 ~D~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 16 RDQEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 3345666666666666654
No 478
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.64 E-value=1.7e+02 Score=27.66 Aligned_cols=162 Identities=15% Similarity=0.008 Sum_probs=91.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHcCcH--HHHHHHHHHHHhcCCCCHH-H-----
Q 024712 67 YEQVSIAAMDCQCLDVAKDCIKVLQKQF----PESKRVGRLEGILLEAKGLW--AEAEKAYSSLLEDNPLDPV-L----- 134 (263)
Q Consensus 67 ~~~la~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~~a~~~~~~~~~--~~A~~~~~~~~~~~p~~~~-~----- 134 (263)
|..++..|...|+.++|++++..+.... +.....+-..-..+...+.- +-..++....+..+|.... +
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 5568889999999999999999998844 21222222333333344433 5566666666666665421 0
Q ss_pred -------HHHHHHHHHHcCChhHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhc--------ccHHHHHHH--HHHHHh--
Q 024712 135 -------HKRRVAIAKAQGNFPTAIEWLNKYLETFMAD-HDAWRELAEIYVSL--------QMYKQAAFC--YEELIL-- 194 (263)
Q Consensus 135 -------~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~--------g~~~~A~~~--~~~al~-- 194 (263)
-.....-+......+-++.+++.++..+... ......++..|... ++-+++.+. .++...
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l 666 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFL 666 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHh
Confidence 0112223345667778888888888766553 33444444444321 122233333 222221
Q ss_pred -----hCCC-------CHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhc
Q 024712 195 -----SQPT-------VPLYHLAYADVLYTLGGVDNILLAKKYYASTID 231 (263)
Q Consensus 195 -----~~p~-------~~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~ 231 (263)
.+|. ....+...+.++.++|+ .++|+..|-..+.
T Consensus 667 ~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~k---he~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 667 ESSDLYDPQLLLERLNGDELYEERAILLGRLGK---HEEALHIYVHELD 712 (877)
T ss_pred hhhcccCcchhhhhccchhHHHHHHHHHhhhhh---HHHHHHHHHHHhc
Confidence 1121 13456677777777887 7777777666554
No 479
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=57.47 E-value=58 Score=29.77 Aligned_cols=94 Identities=17% Similarity=0.082 Sum_probs=74.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCC----HHHHHHHHHHHHh--cccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHh
Q 024712 139 VAIAKAQGNFPTAIEWLNKYLETFMAD----HDAWRELAEIYVS--LQMYKQAAFCYEELILSQPTVPLYHLAYADVLYT 212 (263)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 212 (263)
+..++..+++..+..-|..++.+-|.+ .....+.+.++.. .|+|..++.-..-++...|....+....+.+|..
T Consensus 60 ~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~a 139 (748)
T KOG4151|consen 60 GNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEA 139 (748)
T ss_pred hhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHH
Confidence 556667777888877788888777744 3445556666654 5799999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHhhccCCC
Q 024712 213 LGGVDNILLAKKYYASTIDLTGG 235 (263)
Q Consensus 213 ~g~~~~~~~A~~~~~~al~~~~~ 235 (263)
.+. ++-|.+...-.....|.
T Consensus 140 l~k---~d~a~rdl~i~~~~~p~ 159 (748)
T KOG4151|consen 140 LNK---LDLAVRDLRIVEKMDPS 159 (748)
T ss_pred HHH---HHHHHHHHHHHhcCCCC
Confidence 999 99999997777777886
No 480
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=57.01 E-value=1e+02 Score=24.85 Aligned_cols=99 Identities=10% Similarity=0.066 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCC---HHH---HHHHHHHHHhcccHHHHHHHHHHHHhhCCCC---HHHH
Q 024712 133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMAD---HDA---WRELAEIYVSLQMYKQAAFCYEELILSQPTV---PLYH 203 (263)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 203 (263)
.++.++|..|...++.+.+.+++.+.++..-.. .++ -..+|.+|..+.-.++.++.....++...+= ....
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK 195 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYK 195 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHH
Confidence 567777777777777777777776666543221 122 2345555555555555565555555543321 1122
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhhccCC
Q 024712 204 LAYADVLYTLGGVDNILLAKKYYASTIDLTG 234 (263)
Q Consensus 204 ~~la~~~~~~g~~~~~~~A~~~~~~al~~~~ 234 (263)
...|...+...+ +.+|-..+..++....
T Consensus 196 ~Y~Gi~~m~~Rn---FkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 196 VYKGIFKMMRRN---FKEAAILLSDILPTFE 223 (412)
T ss_pred HHHHHHHHHHHh---hHHHHHHHHHHhcccc
Confidence 223444444455 6666666666665443
No 481
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=56.46 E-value=60 Score=22.51 Aligned_cols=34 Identities=29% Similarity=0.189 Sum_probs=18.0
Q ss_pred HHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 024712 109 EAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIA 142 (263)
Q Consensus 109 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 142 (263)
+..-+.+.|..+|.++++.+|++..++..+....
T Consensus 87 iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~l 120 (139)
T PF12583_consen 87 IAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNL 120 (139)
T ss_dssp HTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHcc
Confidence 3334456666666666666666666655554443
No 482
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=54.69 E-value=31 Score=28.80 Aligned_cols=31 Identities=19% Similarity=0.248 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 024712 80 LDVAKDCIKVLQKQFPESKRVGRLEGILLEA 110 (263)
Q Consensus 80 ~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~ 110 (263)
|+.|++-++..++.+|++....+..+.+++.
T Consensus 130 FdaAlER~e~Gl~~~p~s~~L~l~~skIll~ 160 (404)
T PF12753_consen 130 FDAALERVELGLEKFPDSILLLLAKSKILLQ 160 (404)
T ss_dssp HHHHHHHHHHGGSSS--H-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcCCCchhHHHHHHHHHHH
Confidence 3455555555556678776666665555443
No 483
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=52.72 E-value=1.7e+02 Score=26.04 Aligned_cols=79 Identities=8% Similarity=-0.016 Sum_probs=46.1
Q ss_pred HHHHHHHHHHcC---ChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-----CCCCHHHHHHH
Q 024712 67 YEQVSIAAMDCQ---CLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLED-----NPLDPVLHKRR 138 (263)
Q Consensus 67 ~~~la~~~~~~~---~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~l 138 (263)
-..+...+++.| .|.-|+..+-.+.+..|... -..++++|.+++.. +..+...|..+
T Consensus 260 qq~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~~---------------r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~ 324 (618)
T PF05053_consen 260 QQDLLWLLYDMGHLARYPMALGNLADLEEIDPTPG---------------RPTPLELFNEAISSARTYYNNHHVYPYTYL 324 (618)
T ss_dssp HHHHHHHHHHTTTTTT-HHHHHHHHHHHHHS--TT---------------S--HHHHHHHHHHHHHHHCTT--SHHHHHH
T ss_pred HHHHHHHHHhcCchhhCchhhhhhHhHHhhccCCC---------------CCCHHHHHHHHHHHHHHHhcCCccccceeh
Confidence 334555555554 56677777777777666311 12334444444432 23455677888
Q ss_pred HHHHHHcCChhHHHHHHHHHHH
Q 024712 139 VAIAKAQGNFPTAIEWLNKYLE 160 (263)
Q Consensus 139 ~~~~~~~g~~~~A~~~~~~~l~ 160 (263)
|..+++.+++.+|+..+-.+-.
T Consensus 325 gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 325 GGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988877654
No 484
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=52.40 E-value=1.7e+02 Score=26.00 Aligned_cols=67 Identities=19% Similarity=0.210 Sum_probs=40.6
Q ss_pred cHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHhcccHHHHHH
Q 024712 113 LWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLET-----FMADHDAWRELAEIYVSLQMYKQAAF 187 (263)
Q Consensus 113 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g~~~~A~~ 187 (263)
.|..|+-.+-.+-+..|.. .-..++..|.+++.. +......|..+|..+++.++|.+|+.
T Consensus 275 ~YPmALg~LadLeEi~pt~---------------~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~ 339 (618)
T PF05053_consen 275 RYPMALGNLADLEEIDPTP---------------GRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALR 339 (618)
T ss_dssp T-HHHHHHHHHHHHHS--T---------------TS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHH
T ss_pred hCchhhhhhHhHHhhccCC---------------CCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHH
Confidence 4566666666665555542 234456666666653 22334567889999999999999999
Q ss_pred HHHHHHh
Q 024712 188 CYEELIL 194 (263)
Q Consensus 188 ~~~~al~ 194 (263)
.+-.+-.
T Consensus 340 ~Wa~aa~ 346 (618)
T PF05053_consen 340 SWAEAAD 346 (618)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887753
No 485
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.37 E-value=1.3e+02 Score=25.75 Aligned_cols=25 Identities=8% Similarity=-0.205 Sum_probs=19.9
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHh
Q 024712 170 RELAEIYVSLQMYKQAAFCYEELIL 194 (263)
Q Consensus 170 ~~la~~~~~~g~~~~A~~~~~~al~ 194 (263)
..-|.+.+.+|+-++|.++++.+..
T Consensus 271 LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 271 LLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3458888889999999998887753
No 486
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.90 E-value=2.3e+02 Score=26.96 Aligned_cols=27 Identities=11% Similarity=0.032 Sum_probs=19.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCC
Q 024712 69 QVSIAAMDCQCLDVAKDCIKVLQKQFP 95 (263)
Q Consensus 69 ~la~~~~~~~~~~~A~~~~~~~~~~~p 95 (263)
+.|..+...|++.+|++.|..++-.-|
T Consensus 996 ~~gy~ltt~gKf~eAie~Frsii~~i~ 1022 (1202)
T KOG0292|consen 996 QKGYKLTTEGKFGEAIEKFRSIIYSIP 1022 (1202)
T ss_pred HHHHhhhccCcHHHHHHHHHHHHhhee
Confidence 456666677888888888887776655
No 487
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=50.89 E-value=82 Score=21.88 Aligned_cols=34 Identities=15% Similarity=-0.043 Sum_probs=17.0
Q ss_pred HHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 024712 142 AKAQGNFPTAIEWLNKYLETFMADHDAWRELAEI 175 (263)
Q Consensus 142 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~ 175 (263)
++..-+.+.|..+|+.+++.+|+...++..+...
T Consensus 86 ~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~ 119 (139)
T PF12583_consen 86 WIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQN 119 (139)
T ss_dssp HHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHH
T ss_pred HHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHc
Confidence 3334445556666666666666665555444433
No 488
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=50.37 E-value=2.2e+02 Score=26.65 Aligned_cols=138 Identities=9% Similarity=0.008 Sum_probs=96.1
Q ss_pred ccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH---cCcHHHHHHHHHHHHhcCCCCHHH
Q 024712 58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEA---KGLWAEAEKAYSSLLEDNPLDPVL 134 (263)
Q Consensus 58 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~~~~~~p~~~~~ 134 (263)
.+++-....+.++...+...|++++-...-..+.+..|..+.+|.....-... .++..++...|++++. +-..+..
T Consensus 107 ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~-dy~~v~i 185 (881)
T KOG0128|consen 107 AINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG-DYNSVPI 185 (881)
T ss_pred cccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc-ccccchH
Confidence 33555666777888888999999999888888999999999888766544333 3677888899999986 4455555
Q ss_pred HHHHHHHHH-------HcCChhHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHhcccHHHHHHHHHHHHhhC
Q 024712 135 HKRRVAIAK-------AQGNFPTAIEWLNKYLETFMAD-------HDAWRELAEIYVSLQMYKQAAFCYEELILSQ 196 (263)
Q Consensus 135 ~~~l~~~~~-------~~g~~~~A~~~~~~~l~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 196 (263)
|...+.... ..++++.-...|.+++..-... ..++...-..|...-..++-+.++...+...
T Consensus 186 w~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~ 261 (881)
T KOG0128|consen 186 WEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP 261 (881)
T ss_pred HHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 555555443 3456777888888888643221 2344455555655555677888888777654
No 489
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=50.00 E-value=1.9e+02 Score=25.79 Aligned_cols=133 Identities=12% Similarity=0.045 Sum_probs=80.2
Q ss_pred CChHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHH------------cCcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 024712 78 QCLDVAKDCIKVLQKQFPESK-----RVGRLEGILLEA------------KGLWAEAEKAYSSLLEDNPLDPVLHKRRVA 140 (263)
Q Consensus 78 ~~~~~A~~~~~~~~~~~p~~~-----~~~~~~a~~~~~------------~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 140 (263)
+.-+++.......-+..|.++ .++..+-.++.. .|+.++|+..+++-....+. .-.....+.
T Consensus 272 ~~qee~~~~~s~~~ek~~s~p~~~~fn~yk~a~KYLR~al~s~p~vlLl~~~~l~eal~~~e~~c~~~~~-~lpi~~~~~ 350 (547)
T PF14929_consen 272 QPQEEYRESLSNYAEKFPSNPGRSIFNAYKYAVKYLRLALQSNPPVLLLIGGRLKEALNELEKFCISSTC-ALPIRLRAH 350 (547)
T ss_pred CcHHHHHHHHhhccccccCccccchhHHHHHHHHHHHHHhcCCCCeEEeccccHHHHHHHHHHhccCCCc-cchHHHHHH
Confidence 344445555544446666666 666655555532 27888888877775443332 233344455
Q ss_pred HHHHcC--ChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHH---HHhhCCCCHHHHHHHHHHHHh-cC
Q 024712 141 IAKAQG--NFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEE---LILSQPTVPLYHLAYADVLYT-LG 214 (263)
Q Consensus 141 ~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~---al~~~p~~~~~~~~la~~~~~-~g 214 (263)
++...+ ..+.-..+++.++..+|........+...+.. ...+...++- -+.+.| .+.+|..++.++.+ .+
T Consensus 351 lle~~d~~~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~---~~~~~~Lle~i~~~l~~~~-s~~iwle~~~~~l~~~~ 426 (547)
T PF14929_consen 351 LLEYFDQNNSSVLSSCLEDCLKKDPTMSYSLERLILLHQK---DYSAEQLLEMIALHLDLVP-SHPIWLEFVSCFLKNPS 426 (547)
T ss_pred HHHHhCcccHHHHHHHHHHHhcCCCcHHHHHHHHHhhhhh---HHHHHHHHHHHHHHhhcCC-CchHHHHHHHHHHhccc
Confidence 555555 56677888999999999887766666555544 3344444442 234443 46678888888888 45
Q ss_pred C
Q 024712 215 G 215 (263)
Q Consensus 215 ~ 215 (263)
+
T Consensus 427 ~ 427 (547)
T PF14929_consen 427 R 427 (547)
T ss_pred c
Confidence 5
No 490
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=49.83 E-value=83 Score=21.64 Aligned_cols=104 Identities=19% Similarity=0.229 Sum_probs=64.0
Q ss_pred HHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHH
Q 024712 108 LEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAF 187 (263)
Q Consensus 108 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 187 (263)
+...+.....+.+++.++..++.++..+..+..++... +..+.+..+.. .++..+ ....+.++...+.+++++.
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~----~~~~yd-~~~~~~~c~~~~l~~~~~~ 90 (140)
T smart00299 17 FEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDN----KSNHYD-IEKVGKLCEKAKLYEEAVE 90 (140)
T ss_pred HHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHh----ccccCC-HHHHHHHHHHcCcHHHHHH
Confidence 34557889999999999998888888888888888765 34555555552 111111 1234455566666777776
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHH-hcCCCCcHHHHHHHHHH
Q 024712 188 CYEELILSQPTVPLYHLAYADVLY-TLGGVDNILLAKKYYAS 228 (263)
Q Consensus 188 ~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~~~~A~~~~~~ 228 (263)
++.+. .....+ -.++. ..++ ++.|++++.+
T Consensus 91 l~~k~----~~~~~A----l~~~l~~~~d---~~~a~~~~~~ 121 (140)
T smart00299 91 LYKKD----GNFKDA----IVTLIEHLGN---YEKAIEYFVK 121 (140)
T ss_pred HHHhh----cCHHHH----HHHHHHcccC---HHHHHHHHHh
Confidence 66543 111111 11222 2377 8888888876
No 491
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=48.94 E-value=79 Score=21.16 Aligned_cols=84 Identities=17% Similarity=0.067 Sum_probs=42.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCh
Q 024712 69 QVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNF 148 (263)
Q Consensus 69 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 148 (263)
.++.+.......++|..+.+-+-........+.......+...|+|++|+ ..... ...++.--.++.+-.+.|--
T Consensus 11 ElAL~atG~HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~AL---l~~~~--~~~pdL~p~~AL~a~klGL~ 85 (116)
T PF09477_consen 11 ELALMATGHHCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEAL---LLPQC--HCYPDLEPWAALCAWKLGLA 85 (116)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHH---HHHTT--S--GGGHHHHHHHHHHCT-H
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHH---Hhccc--CCCccHHHHHHHHHHhhccH
Confidence 34444455556677766665554443334445555666677777777772 22222 22223223345555666666
Q ss_pred hHHHHHHHH
Q 024712 149 PTAIEWLNK 157 (263)
Q Consensus 149 ~~A~~~~~~ 157 (263)
+++...+.+
T Consensus 86 ~~~e~~l~r 94 (116)
T PF09477_consen 86 SALESRLTR 94 (116)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665553
No 492
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.82 E-value=1.4e+02 Score=25.55 Aligned_cols=107 Identities=16% Similarity=0.045 Sum_probs=64.9
Q ss_pred cccccCcchHHH------HHHHHHHHHHcCChHHHHHHHHHHHHhCCC-----------cHHHHHHHHHHHHHcCc----
Q 024712 55 KRSALGPDVWTL------YEQVSIAAMDCQCLDVAKDCIKVLQKQFPE-----------SKRVGRLEGILLEAKGL---- 113 (263)
Q Consensus 55 ~~~~~~~~~~~~------~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-----------~~~~~~~~a~~~~~~~~---- 113 (263)
....++|..-.+ +...|.+++....|.+|+.++-.+-+.+.. -+....-...||+...+
T Consensus 148 r~v~lppsE~kAlmmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL 227 (568)
T KOG2561|consen 148 RKVQLPPSEQKALMMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCL 227 (568)
T ss_pred CeeecChhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccC
Confidence 445566653332 334677888889999999888776665431 12222234556766543
Q ss_pred ------HHHHHHHHHHHHhc---------CCCCH------HHHHHHHHHHHHcCChhHHHHHHHHHHHh
Q 024712 114 ------WAEAEKAYSSLLED---------NPLDP------VLHKRRVAIAKAQGNFPTAIEWLNKYLET 161 (263)
Q Consensus 114 ------~~~A~~~~~~~~~~---------~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 161 (263)
...|...|.++... .+..| ..+..-|.+.+++|+-++|.++++.+...
T Consensus 228 ~DAe~RL~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~ 296 (568)
T KOG2561|consen 228 PDAEVRLVRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAK 296 (568)
T ss_pred ChHHHHHHHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 23344444443321 23333 23455688999999999999999987653
No 493
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=48.74 E-value=1.4e+02 Score=24.11 Aligned_cols=163 Identities=18% Similarity=0.102 Sum_probs=94.8
Q ss_pred ccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCcHHHHHHHHHHHH----hcCCCCHH
Q 024712 58 ALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRVGRLEGILLEAKGLWAEAEKAYSSLL----EDNPLDPV 133 (263)
Q Consensus 58 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~----~~~p~~~~ 133 (263)
.+.|...+....+-.. +..+++.+.++.+++.+..+|--.+..+..+.++.+.|. +.+......-+ ..-|.
T Consensus 94 ~L~~p~ad~~~~~~~~-~~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG~-~~~a~aI~~el~~fL~RlP~--- 168 (301)
T TIGR03362 94 RLAPPPADRVADYQEL-LAQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLGY-AAVAQAIRDELAAFLERLPG--- 168 (301)
T ss_pred cCCCCCHHHHHHHHHH-HhCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhCcC---
Confidence 3444344433333222 366777888888888888888766777888888888884 44444433332 22332
Q ss_pred HHHHHHHHHHHcCCh---hHHHHHHHHHHHh-----------cC--CCHHHHHHHHHHHHhcccHHHHHHHHHHHHhhCC
Q 024712 134 LHKRRVAIAKAQGNF---PTAIEWLNKYLET-----------FM--ADHDAWRELAEIYVSLQMYKQAAFCYEELILSQP 197 (263)
Q Consensus 134 ~~~~l~~~~~~~g~~---~~A~~~~~~~l~~-----------~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 197 (263)
+..+.+..|.. ++...++...... .+ .+......-+......|..+.|+..++..+...+
T Consensus 169 ----L~~L~F~DGtPFad~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~ 244 (301)
T TIGR03362 169 ----LLELKFSDGTPFADDETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAR 244 (301)
T ss_pred ----hhhcccCCCCCCCCHHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCC
Confidence 12222333321 1222222221100 01 1112223336677788899999999998665433
Q ss_pred CC---HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcc
Q 024712 198 TV---PLYHLAYADVLYTLGGVDNILLAKKYYASTIDL 232 (263)
Q Consensus 198 ~~---~~~~~~la~~~~~~g~~~~~~~A~~~~~~al~~ 232 (263)
+. ......+++++...|. .+-|...|....+.
T Consensus 245 s~R~rf~~rL~~A~l~~~~g~---~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 245 EPRERFHWRLLLARLLEQAGK---AELAQQLYAALDQQ 279 (301)
T ss_pred ChHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Confidence 22 3345667899999999 99999999987654
No 494
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=48.73 E-value=32 Score=16.57 Aligned_cols=13 Identities=38% Similarity=0.475 Sum_probs=4.9
Q ss_pred HHHHhcCCCHHHH
Q 024712 157 KYLETFMADHDAW 169 (263)
Q Consensus 157 ~~l~~~p~~~~~~ 169 (263)
+++..+|.+..+|
T Consensus 8 ~~l~~~pknys~W 20 (31)
T PF01239_consen 8 KALEKDPKNYSAW 20 (31)
T ss_dssp HHHHHSTTCHHHH
T ss_pred HHHHHCcccccHH
Confidence 3333333333333
No 495
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=48.40 E-value=1e+02 Score=24.92 Aligned_cols=44 Identities=16% Similarity=0.077 Sum_probs=34.3
Q ss_pred cccCcchHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHH
Q 024712 57 SALGPDVWTLYEQVSIAAMDCQCLDVAKDCIKVLQKQFPESKRV 100 (263)
Q Consensus 57 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 100 (263)
....|+....|.+........||+++|+.+++++-...-..++-
T Consensus 250 ~~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~ 293 (303)
T PRK10564 250 EPMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARS 293 (303)
T ss_pred CccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHH
Confidence 34456677777788888899999999999999998877655543
No 496
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.56 E-value=2.6e+02 Score=26.06 Aligned_cols=52 Identities=21% Similarity=0.151 Sum_probs=32.6
Q ss_pred HHHcCChHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Q 024712 74 AMDCQCLDVAKDCIKVLQKQFPE--SKRVGRLEGILLEAKGLWAEAEKAYSSLL 125 (263)
Q Consensus 74 ~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 125 (263)
+++.+.|++|+...+.....-|. -..+...+-.-+...|+|++|....-+++
T Consensus 366 ll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~ 419 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML 419 (846)
T ss_pred HHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh
Confidence 35668888998887766555443 22344444445566678887776665554
No 497
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.45 E-value=56 Score=30.55 Aligned_cols=53 Identities=17% Similarity=0.108 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcccHHHHHHHHHH
Q 024712 131 DPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSLQMYKQAAFCYEE 191 (263)
Q Consensus 131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 191 (263)
+++.|..+|.....+|+..-|.-+|++.- -+..|..+|+-.|+.++-.+....
T Consensus 671 d~d~w~rLge~Al~qgn~~IaEm~yQ~~k--------nfekLsfLYliTgn~eKL~Km~~i 723 (1202)
T KOG0292|consen 671 DKDVWERLGEEALRQGNHQIAEMCYQRTK--------NFEKLSFLYLITGNLEKLSKMMKI 723 (1202)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHhh--------hhhheeEEEEEeCCHHHHHHHHHH
Confidence 34555555555555555555555554432 123344445555555544444433
No 498
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=44.84 E-value=66 Score=27.48 Aligned_cols=88 Identities=15% Similarity=0.014 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc
Q 024712 100 VGRLEGILLEAKGLWAEAEKAYSSLLEDNPLDPVLHKRRVAIAKAQGNFPTAIEWLNKYLETFMADHDAWRELAEIYVSL 179 (263)
Q Consensus 100 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~ 179 (263)
.+..+-.+|++.|+..+|++.-...+-.+|++..+..++-......|..+.-+ ..+.+..-..|+.++.-.+..
T Consensus 135 py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~l~~s~d~l------~DlE~~~~~~~Fir~v~~y~~ 208 (471)
T KOG4459|consen 135 PYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTMLGVSEDEL------TDLERREHEQWFIRGVRLYSG 208 (471)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhccCCCcccc------cccccchHHHHHHHHhhhccc
Confidence 34567778888899999998888888888888877666554443444433221 223344445566666666666
Q ss_pred ccHHHHHHHHHHHH
Q 024712 180 QMYKQAAFCYEELI 193 (263)
Q Consensus 180 g~~~~A~~~~~~al 193 (263)
++++.+...++.++
T Consensus 209 ~d~~~~v~~ve~AL 222 (471)
T KOG4459|consen 209 EDPRQCVPEVELAL 222 (471)
T ss_pred cCchhcchhHHHHH
Confidence 66555554444443
No 499
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=44.81 E-value=1e+02 Score=21.19 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHhcCC--CHHHHHHHHHH
Q 024712 133 VLHKRRVAIAKAQGNFPTAIEWLNKYLETFMA--DHDAWRELAEI 175 (263)
Q Consensus 133 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~la~~ 175 (263)
..+..++..+...|++..|+.+.....+..|- ....|..|-..
T Consensus 53 ~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 53 RLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 45666667777777777777777777666542 24455544433
No 500
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=44.69 E-value=64 Score=19.62 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=7.8
Q ss_pred cccHHHHHHHHHHHH
Q 024712 179 LQMYKQAAFCYEELI 193 (263)
Q Consensus 179 ~g~~~~A~~~~~~al 193 (263)
.|++++|+.+|..++
T Consensus 21 ~g~~~eAl~~Y~~a~ 35 (77)
T smart00745 21 AGDYEEALELYKKAI 35 (77)
T ss_pred cCCHHHHHHHHHHHH
Confidence 455555555555444
Done!